HHsearch alignment for GI: 254780312 and conserved domain: COG3947
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.83 E-value=8.2e-20 Score=139.72 Aligned_cols=114 Identities=31% Similarity=0.498 Sum_probs=105.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh 81 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSH 81 (361)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27998463899999999998611021006887889999984388779998523786087899999875314868999630
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 978999999976998699769798999999999960
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
T Consensus 82 ~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 82 AEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred HHH--HHHHCCCCHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 565--2320355667541688888899999998740