HHsearch alignment for GI: 254780312 and conserved domain: COG3947

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms].
Probab=99.83  E-value=8.2e-20  Score=139.72  Aligned_cols=114  Identities=31%  Similarity=0.498  Sum_probs=105.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r    4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF   83 (122)
Q Consensus         4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~   83 (122)
T Consensus         2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh   81 (361)
T COG3947           2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSH   81 (361)
T ss_pred             CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             27998463899999999998611021006887889999984388779998523786087899999875314868999630


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             978999999976998699769798999999999960
Q gi|254780312|r   84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT  119 (122)
Q Consensus        84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~  119 (122)
T Consensus        82 ~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k  115 (361)
T COG3947          82 AEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK  115 (361)
T ss_pred             HHH--HHHHCCCCHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             565--2320355667541688888899999998740