HHsearch alignment for GI: 254780312 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.92 E-value=1.6e-24 Score=167.94 Aligned_cols=119 Identities=28% Similarity=0.431 Sum_probs=114.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT 83 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT 83 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 87689976848899999999983895366504799998306678897699855788885089999999539998879982
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 84 GhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred CCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 788728999999742156774788548999999999998