HHsearch alignment for GI: 254780312 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.92  E-value=1.6e-24  Score=167.94  Aligned_cols=119  Identities=28%  Similarity=0.431  Sum_probs=114.5

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r    2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT   81 (122)
Q Consensus         2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s   81 (122)
T Consensus         4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT   83 (202)
T COG4566           4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT   83 (202)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf             87689976848899999999983895366504799998306678897699855788885089999999539998879982


Q ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             379789999999769986997697989999999999603
Q gi|254780312|r   82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI  120 (122)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~  120 (122)
T Consensus        84 GhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~  122 (202)
T COG4566          84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR  122 (202)
T ss_pred             CCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             788728999999742156774788548999999999998