HHsearch alignment for GI: 254780312 and conserved domain: COG4567

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].

Probab=99.75  E-value=4.8e-17  Score=123.15  Aligned_cols=114  Identities=23%  Similarity=0.429  Sum_probs=109.7

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r    3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG   82 (122)
Q Consensus         3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~   82 (122)
T Consensus        10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTG   89 (182)
T COG4567          10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTG   89 (182)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEC
T ss_conf             60589618769999999998606862576144999999985179852889864068874689999982497643898845


Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             7978999999976998699769798999999999
Q gi|254780312|r   83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR  116 (122)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~  116 (122)
T Consensus        90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~  123 (182)
T COG4567          90 YASIATAVEAVKLGACDYLAKPADADDILAALLR  123 (182)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             1179999999986245540797776899999860