HHsearch alignment for GI: 254780312 and conserved domain: COG4999
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms].
Probab=96.19 E-value=0.034 Score=34.14 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH-HHHHHCCCC-CEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999-999858998-5999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR-RATELDPDL-KVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~-~ir~~~~~~-pii~ 79 (122)
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vil 86 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFVIL 86 (140)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCCCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 664577668608999999998468826884233----1002744520346536665568803889999999865313677
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 94379789999999769986997697989999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i 114 (122)
T Consensus 87 alPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 87 ALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ECCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
T ss_conf 36728887599996314286740765065667899