HHsearch alignment for GI: 254780312 and conserved domain: PRK09390
>PRK09390 fixJ response regulator FixJ; Provisional.
Probab=99.95 E-value=5e-27 Score=182.97 Aligned_cols=120 Identities=29% Similarity=0.445 Sum_probs=115.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivl 81 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 99979998499999999999999889989998999999999765797999877999998960799998722899867999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 82 T~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 7457488889999829464455999999999999999971