HHsearch alignment for GI: 254780312 and conserved domain: PRK10100

>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.65  E-value=4.6e-15  Score=111.28  Aligned_cols=115  Identities=15%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHHCCCCCEEEE
Q ss_conf             6699975998999999999998898999-9999799999997189989999836559997999999-9985899859999
Q gi|254780312|r    3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR-ATELDPDLKVMFI   80 (122)
Q Consensus         3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~-ir~~~~~~pii~~   80 (122)
T Consensus        11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliL   87 (216)
T PRK10100         11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLL   87 (216)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             38999558429999999988987-64763024776677644--7999899848878830899999999725999779999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             4379789999999769986997697989999999999603
Q gi|254780312|r   81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI  120 (122)
Q Consensus        81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~  120 (122)
T Consensus        88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G  127 (216)
T PRK10100         88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG  127 (216)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             6887489999997658766766899999999999999879