HHsearch alignment for GI: 254780312 and conserved domain: PRK10100
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional.
Probab=99.65 E-value=4.6e-15 Score=111.28 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=104.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999-9999799999997189989999836559997999999-9985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR-ATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~-ir~~~~~~pii~~ 80 (122)
T Consensus 11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliL 87 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 38999558429999999988987-64763024776677644--7999899848878830899999999725999779999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G 127 (216)
T PRK10100 88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 6887489999997658766766899999999999999879