HHsearch alignment for GI: 254780312 and conserved domain: PRK10430

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.94  E-value=6.2e-26  Score=176.40  Aligned_cols=117  Identities=21%  Similarity=0.300  Sum_probs=109.5

Q ss_pred             EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             699975998999999999998-898999-999979999999--7189989999836559997999999998589985999
Q gi|254780312|r    4 KILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKV--REEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF   79 (122)
Q Consensus         4 rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~--~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~   79 (122)
T Consensus         3 rVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~   82 (239)
T PRK10430          3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIV   82 (239)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             79999298999999999985189908999989999999999657999858997899999978999999998589981999


Q ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf             94379789999999769986997697989999999999603
Q gi|254780312|r   80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI  120 (122)
Q Consensus        80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~  120 (122)
T Consensus        83 ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~  123 (239)
T PRK10430         83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK  123 (239)
T ss_pred             EEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf             97268899999999839503048999999999999999999