HHsearch alignment for GI: 254780312 and conserved domain: PRK10430
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional.
Probab=99.94 E-value=6.2e-26 Score=176.40 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=109.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699975998999999999998-898999-999979999999--7189989999836559997999999998589985999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKV--REEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~--~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
T Consensus 3 rVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~ 82 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIV 82 (239)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 79999298999999999985189908999989999999999657999858997899999978999999998589981999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 83 ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~ 123 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf 97268899999999839503048999999999999999999