HHsearch alignment for GI: 254780312 and conserved domain: PRK10529
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional.
Probab=99.95 E-value=1e-27 Score=187.03 Aligned_cols=118 Identities=23% Similarity=0.355 Sum_probs=113.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
T Consensus 2 ~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~-~~~pII~lta 80 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLSA 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC-CCCCEEEEEC
T ss_conf 989999798999999999999889999997999999998611799899980788888876331000127-9987899954
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~ 119 (225)
T PRK10529 81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 689899999997698765407854599999999997140