HHsearch alignment for GI: 254780312 and conserved domain: PRK10693

>PRK10693 response regulator of RpoS; Provisional.
Probab=99.97  E-value=1.2e-29  Score=198.74  Aligned_cols=118  Identities=24%  Similarity=0.309  Sum_probs=112.3

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r    2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT   81 (122)
Q Consensus         2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s   81 (122)
T Consensus         7 gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvlT   86 (337)
T PRK10693          7 GKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVIS   86 (337)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf             99899994999999999999997899999989999999998658999999968999999899999999858996499998


Q ss_pred             CCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf             379789999999769986997697-98999999999960
Q gi|254780312|r   82 GFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT  119 (122)
Q Consensus        82 ~~~~~~~~~~~~~~g~~~~l~KP~-~~~~L~~~i~~~l~  119 (122)
T Consensus        87 a~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~  125 (337)
T PRK10693         87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY  125 (337)
T ss_pred             CCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf             689999999999749958997896999999999998751