HHsearch alignment for GI: 254780312 and conserved domain: PRK10693
>PRK10693 response regulator of RpoS; Provisional.
Probab=99.97 E-value=1.2e-29 Score=198.74 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=112.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
T Consensus 7 gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvlT 86 (337)
T PRK10693 7 GKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVIS 86 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99899994999999999999997899999989999999998658999999968999999899999999858996499998
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 379789999999769986997697-98999999999960
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT 119 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~-~~~~L~~~i~~~l~ 119 (122)
T Consensus 87 a~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 689999999999749958997896999999999998751