HHsearch alignment for GI: 254780312 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.95  E-value=1.3e-27  Score=186.38  Aligned_cols=117  Identities=26%  Similarity=0.448  Sum_probs=110.9

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf             66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r    3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG   82 (122)
Q Consensus         3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~   82 (122)
T Consensus         2 ~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~-~~~~PII~lta   79 (232)
T PRK10955          2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQ-THQTPVIMLTA   79 (232)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEEC-CCCCCEEEEEC
T ss_conf             88999969899999999999888999999899999999964-89899999189998886723012440-78887899805


Q ss_pred             CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             797899999997699869976979899999999996036
Q gi|254780312|r   83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK  121 (122)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~  121 (122)
T Consensus        80 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~  118 (232)
T PRK10955         80 RGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS  118 (232)
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf             567688999997697576338999899999999997615