HHsearch alignment for GI: 254780312 and conserved domain: PRK11083
>PRK11083 DNA-binding response regulator CreB; Provisional.
Probab=99.97 E-value=2.5e-29 Score=196.77 Aligned_cols=120 Identities=30% Similarity=0.492 Sum_probs=116.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
T Consensus 1 M~~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~ 80 (229)
T PRK11083 1 MQQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIF 80 (229)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999969999999999999988999999899999999997189989997388999876889999997089972999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR 121 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 83678989999999759987730874289999999999976