HHsearch alignment for GI: 254780312 and conserved domain: PRK11466
>PRK11466 hybrid sensory histidine kinase TorS; Provisional.
Probab=99.96 E-value=1e-27 Score=187.09 Aligned_cols=119 Identities=25% Similarity=0.402 Sum_probs=113.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971-8998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
T Consensus 682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~~~~~pIIAlT 761 (912)
T PRK11466 682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFS 761 (912)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 86999948788999999999986998999899999999997189985898769999998999999998619999789977
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 762 A~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~~~ 801 (912)
T PRK11466 762 AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (912)
T ss_pred CCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCC
T ss_conf 9878899999997699877549899999999999984667