HHsearch alignment for GI: 254780312 and conserved domain: PRK13435

>PRK13435 response regulator; Provisional.
Probab=99.93  E-value=4.3e-25  Score=171.36  Aligned_cols=115  Identities=25%  Similarity=0.358  Sum_probs=105.0

Q ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             6699975998999999999998898999-999979999999718998999983655-99979999999985899859999
Q gi|254780312|r    3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFI   80 (122)
Q Consensus         3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~   80 (122)
T Consensus         2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~-~~~ipvI~l   80 (141)
T PRK13435          2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSI-DGGVEVIFM   80 (141)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf             7899989989999999999998799799975999999999765999899978878999989999999987-599838999


Q ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf             43797899999997699869976979899999999996036
Q gi|254780312|r   81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK  121 (122)
Q Consensus        81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~  121 (122)
T Consensus        81 Ta~~d~---~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr  118 (141)
T PRK13435         81 TANPER---VGHDFAGALGVIAKPYSLRQVARALSYVAARR  118 (141)
T ss_pred             ECCHHH---HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf             777998---60134599858989999899999999999715