HHsearch alignment for GI: 254780312 and conserved domain: PRK13557

>PRK13557 histidine kinase; Provisional.
Probab=99.96  E-value=1.3e-28  Score=192.46  Aligned_cols=121  Identities=27%  Similarity=0.514  Sum_probs=113.9

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             86699975998999999999998898999999979999999718-998999983655-9997999999998589985999
Q gi|254780312|r    2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATELDPDLKVMF   79 (122)
Q Consensus         2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~   79 (122)
T Consensus       413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii~  492 (538)
T PRK13557        413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLL  492 (538)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf             72589967989999999999997699999989999999999609998899887779999889999999985389983999


Q ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf             9437978999999976998699769798999999999960369
Q gi|254780312|r   80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN  122 (122)
Q Consensus        80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~  122 (122)
T Consensus       493 ~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~  535 (538)
T PRK13557        493 TTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDGPT  535 (538)
T ss_pred             EECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             9799877889977528998888198999999999999867898