HHsearch alignment for GI: 254780312 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=99.96 E-value=1.3e-28 Score=192.46 Aligned_cols=121 Identities=27% Similarity=0.514 Sum_probs=113.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718-998999983655-9997999999998589985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~ 79 (122)
T Consensus 413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii~ 492 (538)
T PRK13557 413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLL 492 (538)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 72589967989999999999997699999989999999999609998899887779999889999999985389983999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 9437978999999976998699769798999999999960369
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
T Consensus 493 ~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~ 535 (538)
T PRK13557 493 TTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDGPT 535 (538)
T ss_pred EECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 9799877889977528998888198999999999999867898