HHsearch alignment for GI: 254780312 and conserved domain: PRK13558
>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.69 E-value=8.2e-17 Score=121.75 Aligned_cols=114 Identities=10% Similarity=0.143 Sum_probs=100.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~ 98 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA 98 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99994688877752345666774212763238889865315898769965657888679999998613899988999567
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 978999999976998699769798999999999960
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
T Consensus 99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 85899999875163643344--71768999999999