HHsearch alignment for GI: 254780312 and conserved domain: PRK13558

>PRK13558 bacterio-opsin activator; Provisional.
Probab=99.69  E-value=8.2e-17  Score=121.75  Aligned_cols=114  Identities=10%  Similarity=0.143  Sum_probs=100.7

Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf             69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r    4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF   83 (122)
Q Consensus         4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~   83 (122)
T Consensus        19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~   98 (674)
T PRK13558         19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA   98 (674)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             99994688877752345666774212763238889865315898769965657888679999998613899988999567


Q ss_pred             CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf             978999999976998699769798999999999960
Q gi|254780312|r   84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT  119 (122)
Q Consensus        84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~  119 (122)
T Consensus        99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~  132 (674)
T PRK13558         99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE  132 (674)
T ss_pred             CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf             85899999875163643344--71768999999999