HHsearch alignment for GI: 254780312 and conserved domain: PRK13856
>PRK13856 two-component response regulator VirG; Provisional.
Probab=99.94 E-value=8.8e-26 Score=175.50 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=109.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
T Consensus 2 ~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~-~~~piiilt~ 80 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISG 80 (241)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC-CCCCEEEEEC
T ss_conf 989999698999999999998779999998999999999865999999996999876613455564036-9973699972
Q ss_pred -CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf -797899999997699869976979899999999996036
Q gi|254780312|r 83 -FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 -~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
T Consensus 81 ~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 6787899999987699889977767779999999998745