HHsearch alignment for GI: 254780312 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.96 E-value=4.4e-28 Score=189.27 Aligned_cols=113 Identities=35% Similarity=0.589 Sum_probs=110.5
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99759989999999999988989999999799999997189989999836559997999999998589985999943797
Q gi|254780312|r 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 (122)
Q Consensus 6 LiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~ 85 (122)
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~~~ 80 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGD 80 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98927299999999999988999999899999999987579999997799989872699999998589995999978789
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 899999997699869976979899999999996
Q gi|254780312|r 86 VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 86 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
T Consensus 81 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 81 DEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 999999997689789969899999999999869