HHsearch alignment for GI: 254780312 and conserved domain: cd02068
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=93.25 E-value=0.77 Score=26.05 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCEEEEECCH--HHHHH-HHHHCCCCEEEEEEECCCCC-HHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 999999999889899999997--99999-99718998999983655999-799999999858998599994379789999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNG--ASAYD-KVREEPFSLLLTDIVMPEMD-GIELARRATELDPDLKVMFITGFAAVALNP 90 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g--~~al~-~~~~~~~dlii~D~~mP~~d-G~el~~~ir~~~~~~pii~~s~~~~~~~~~ 90 (122)
T Consensus 5 l~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~GG~h~t~-~p~ 83 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF-FPE 83 (127)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CHH
T ss_conf 9999999997899579985787620399998649969999997688999999999999997899789985987454-999
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 99976998699769
Q gi|254780312|r 91 DSNAPKNAKVLSKP 104 (122)
Q Consensus 91 ~~~~~g~~~~l~KP 104 (122)
T Consensus 84 ~~l~~~~~D~vv~G 97 (127)
T cd02068 84 EILEEPGVDFVVIG 97 (127)
T ss_pred HHHHCCCCCEEEEC
T ss_conf 99707587789968