Query gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 122
No_of_seqs 118 out of 24529
Neff 7.8
Searched_HMMs 39220
Date Sun May 29 23:41:51 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780312.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02154 PhoB phosphate regul 100.0 1.7E-34 4.3E-39 227.7 12.3 121 1-121 1-123 (226)
2 PRK10923 glnG nitrogen regulat 100.0 4.3E-31 1.1E-35 207.3 15.4 120 1-120 1-121 (469)
3 PRK09581 pleD response regulat 100.0 1.6E-30 4E-35 204.0 16.6 120 1-120 1-122 (457)
4 PRK11361 acetoacetate metaboli 100.0 3.6E-30 9.3E-35 201.7 16.1 118 3-120 5-122 (457)
5 PRK10161 transcriptional regul 100.0 5.8E-30 1.5E-34 200.5 16.5 120 1-120 1-122 (229)
6 PRK10693 response regulator of 100.0 1.2E-29 2.9E-34 198.7 17.6 118 2-119 7-125 (337)
7 PRK10365 transcriptional regul 100.0 1.3E-29 3.4E-34 198.3 16.5 117 4-120 7-123 (441)
8 PRK11083 DNA-binding response 100.0 2.5E-29 6.3E-34 196.8 17.0 120 1-120 1-121 (229)
9 PRK10841 hybrid sensory kinase 100.0 4.3E-29 1.1E-33 195.3 16.8 117 3-119 825-941 (947)
10 PRK09468 ompR osmolarity respo 100.0 4.7E-29 1.2E-33 195.1 16.5 119 3-121 6-124 (239)
11 PRK11107 hybrid sensory histid 100.0 5.8E-29 1.5E-33 194.5 16.1 117 3-119 669-787 (920)
12 PRK10610 chemotaxis regulatory 100.0 1.3E-28 3.3E-33 192.4 17.6 118 4-121 7-127 (129)
13 PRK09836 DNA-binding transcrip 100.0 6.2E-29 1.6E-33 194.4 15.7 118 4-121 2-119 (226)
14 PRK10336 DNA-binding transcrip 100.0 6.1E-29 1.5E-33 194.4 15.3 118 4-121 2-119 (219)
15 PRK13557 histidine kinase; Pro 100.0 1.3E-28 3.3E-33 192.5 16.8 121 2-122 413-535 (538)
16 pfam00072 Response_reg Respons 100.0 7.7E-29 2E-33 193.8 15.2 111 5-115 1-111 (111)
17 CHL00148 orf27 Ycf27; Reviewed 100.0 6E-29 1.5E-33 194.4 13.6 119 1-120 5-123 (240)
18 PRK09959 hybrid sensory histid 100.0 2.8E-28 7.2E-33 190.4 16.5 117 3-119 959-1075(1197)
19 PRK10766 DNA-binding transcrip 100.0 1.4E-28 3.5E-33 192.3 13.8 119 1-120 1-119 (224)
20 COG2204 AtoC Response regulato 100.0 4.8E-28 1.2E-32 189.0 16.6 121 1-121 3-123 (464)
21 cd00156 REC Signal receiver do 100.0 4.4E-28 1.1E-32 189.3 15.6 113 6-118 1-113 (113)
22 PRK11517 transcriptional regul 100.0 7.4E-28 1.9E-32 187.9 16.4 117 4-121 2-118 (223)
23 PRK11466 hybrid sensory histid 100.0 1E-27 2.6E-32 187.1 16.4 119 3-121 682-801 (912)
24 TIGR01387 cztR_silR_copR heavy 100.0 9.6E-30 2.5E-34 199.2 5.7 117 5-121 1-117 (219)
25 PRK10046 dpiA two-component re 100.0 1.4E-27 3.5E-32 186.3 16.2 120 1-120 1-124 (225)
26 PRK11091 aerobic respiration c 100.0 1.7E-27 4.4E-32 185.7 16.4 117 3-120 526-645 (779)
27 PRK11173 two-component respons 100.0 1.9E-27 4.9E-32 185.4 16.2 119 1-120 1-120 (237)
28 TIGR01818 ntrC nitrogen regula 100.0 3.9E-28 9.9E-33 189.6 12.5 117 5-121 1-118 (471)
29 PRK10701 DNA-binding transcrip 100.0 7.5E-28 1.9E-32 187.9 12.6 117 3-120 2-118 (240)
30 PRK10529 DNA-binding transcrip 100.0 1E-27 2.7E-32 187.0 13.2 118 3-121 2-119 (225)
31 PRK10955 DNA-binding transcrip 100.0 1.3E-27 3.4E-32 186.4 13.5 117 3-121 2-118 (232)
32 PRK10643 DNA-binding transcrip 100.0 6.6E-27 1.7E-31 182.2 16.4 117 4-120 2-118 (222)
33 PRK09390 fixJ response regulat 100.0 5E-27 1.3E-31 183.0 15.2 120 1-120 2-121 (202)
34 PRK10816 DNA-binding transcrip 99.9 6.2E-27 1.6E-31 182.4 14.7 118 4-121 2-119 (223)
35 PRK10710 DNA-binding transcrip 99.9 1.6E-26 4.1E-31 179.9 14.3 117 3-120 11-127 (240)
36 COG0745 OmpR Response regulato 99.9 3.1E-26 7.8E-31 178.2 15.6 118 3-121 1-119 (229)
37 COG4753 Response regulator con 99.9 2.8E-26 7.2E-31 178.4 14.5 117 3-119 2-121 (475)
38 PRK13856 two-component respons 99.9 8.8E-26 2.2E-30 175.5 15.8 118 3-121 2-120 (241)
39 PRK10430 DNA-binding transcrip 99.9 6.2E-26 1.6E-30 176.4 14.8 117 4-120 3-123 (239)
40 PRK13435 response regulator; P 99.9 4.3E-25 1.1E-29 171.4 15.0 115 3-121 2-118 (141)
41 TIGR02875 spore_0_A sporulatio 99.9 3.2E-25 8E-30 172.2 14.0 117 4-120 4-124 (270)
42 KOG0519 consensus 99.9 1.3E-24 3.2E-29 168.5 14.1 118 2-119 666-785 (786)
43 PRK00742 chemotaxis-specific m 99.9 5.7E-24 1.5E-28 164.6 16.7 105 1-106 1-109 (345)
44 COG4566 TtrR Response regulato 99.9 1.6E-24 4.1E-29 167.9 13.4 119 2-120 4-122 (202)
45 PRK12555 chemotaxis-specific m 99.9 2.1E-22 5.4E-27 155.2 15.4 113 4-117 3-128 (340)
46 COG3437 Response regulator con 99.9 6E-23 1.5E-27 158.5 12.4 118 4-121 16-136 (360)
47 TIGR02956 TMAO_torS TMAO reduc 99.9 7.8E-23 2E-27 157.8 11.2 116 3-118 762-886 (1052)
48 PRK09958 DNA-binding transcrip 99.9 7.4E-22 1.9E-26 152.0 15.5 116 4-119 2-118 (204)
49 PRK10651 transcriptional regul 99.9 5E-22 1.3E-26 153.0 13.8 117 4-120 8-126 (216)
50 PRK13837 two-component VirA-li 99.9 1.1E-21 2.9E-26 150.9 15.4 117 3-121 700-818 (831)
51 PRK09483 response regulator; P 99.9 2E-21 5E-26 149.4 15.9 117 4-120 3-121 (216)
52 COG3706 PleD Response regulato 99.9 2.3E-21 5.9E-26 149.0 15.4 119 3-121 133-253 (435)
53 PRK09935 transcriptional regul 99.9 4.1E-21 1.1E-25 147.5 16.1 120 1-120 1-123 (210)
54 PRK10403 transcriptional regul 99.9 2.2E-21 5.5E-26 149.2 14.5 118 3-120 7-126 (215)
55 PRK10840 transcriptional regul 99.9 3.7E-20 9.5E-25 141.8 16.8 120 1-120 1-126 (216)
56 COG2197 CitB Response regulato 99.9 5.2E-20 1.3E-24 140.9 16.9 117 4-120 2-120 (211)
57 COG4565 CitB Response regulato 99.8 1.1E-19 2.8E-24 138.9 14.5 117 4-120 2-120 (224)
58 PRK10360 DNA-binding transcrip 99.8 3.8E-19 9.6E-24 135.8 15.3 114 4-120 3-118 (196)
59 TIGR02915 PEP_resp_reg putativ 99.8 6.8E-20 1.7E-24 140.2 11.2 116 5-121 1-121 (451)
60 COG3947 Response regulator con 99.8 8.2E-20 2.1E-24 139.7 11.2 114 4-119 2-115 (361)
61 COG0784 CheY FOG: CheY-like re 99.8 1.3E-18 3.3E-23 132.5 16.8 119 2-120 5-126 (130)
62 PRK09191 two-component respons 99.8 2.8E-19 7.1E-24 136.5 13.0 116 1-119 136-253 (261)
63 PRK11697 putative two-componen 99.8 3E-18 7.6E-23 130.4 15.5 114 4-120 3-118 (239)
64 COG4567 Response regulator con 99.7 4.8E-17 1.2E-21 123.1 13.3 114 3-116 10-123 (182)
65 COG2201 CheB Chemotaxis respon 99.7 5.7E-16 1.5E-20 116.7 14.2 103 3-106 2-108 (350)
66 PRK13558 bacterio-opsin activa 99.7 8.2E-17 2.1E-21 121.8 8.3 114 4-119 19-132 (674)
67 PRK10100 DNA-binding transcrip 99.7 4.6E-15 1.2E-19 111.3 13.2 115 3-120 11-127 (216)
68 COG3707 AmiR Response regulato 99.6 6E-14 1.5E-18 104.6 11.9 117 1-118 4-121 (194)
69 PRK11475 DNA-binding transcrip 99.5 7.8E-13 2E-17 97.9 12.2 105 15-119 3-114 (205)
70 COG3279 LytT Response regulato 99.4 1.6E-12 4.1E-17 96.0 8.9 113 4-118 3-117 (244)
71 PRK09581 pleD response regulat 99.1 2.3E-09 5.9E-14 77.1 13.7 117 3-120 156-274 (457)
72 smart00448 REC cheY-homologous 99.1 3.1E-10 7.8E-15 82.4 8.3 54 4-57 2-55 (55)
73 PRK11107 hybrid sensory histid 99.1 4.9E-09 1.3E-13 75.1 12.8 111 2-116 536-648 (920)
74 COG3706 PleD Response regulato 99.0 7.4E-10 1.9E-14 80.1 5.1 92 27-120 13-104 (435)
75 pfam06490 FleQ Flagellar regul 98.8 1.4E-07 3.5E-12 66.5 12.2 107 4-117 1-107 (109)
76 pfam03709 OKR_DC_1_N Orn/Lys/A 97.5 0.0016 4.2E-08 42.1 9.7 100 16-118 7-108 (111)
77 cd02067 B12-binding B12 bindin 96.4 0.069 1.8E-06 32.3 10.3 93 12-105 13-111 (119)
78 PRK13566 anthranilate synthase 96.4 0.017 4.4E-07 35.9 7.2 80 2-84 523-606 (724)
79 COG4999 Uncharacterized domain 96.2 0.034 8.7E-07 34.1 7.7 109 2-114 11-121 (140)
80 PRK07206 hypothetical protein; 95.9 0.15 3.9E-06 30.2 13.1 116 1-121 1-182 (415)
81 TIGR01815 TrpE-clade3 anthrani 95.7 0.057 1.5E-06 32.8 7.2 99 2-105 524-624 (726)
82 pfam02310 B12-binding B12 bind 94.2 0.53 1.3E-05 27.0 10.4 92 9-101 11-109 (121)
83 PRK06895 para-aminobenzoate sy 94.0 0.35 8.9E-06 28.1 7.3 80 1-83 1-83 (191)
84 PRK05637 anthranilate synthase 93.7 0.2 5.1E-06 29.5 5.7 79 3-83 2-83 (208)
85 PRK05993 short chain dehydroge 93.7 0.44 1.1E-05 27.5 7.4 55 1-55 3-57 (277)
86 COG3967 DltE Short-chain dehyd 93.7 0.65 1.7E-05 26.5 8.9 80 3-82 6-86 (245)
87 PRK02261 methylaspartate mutas 93.6 0.68 1.7E-05 26.4 13.9 116 4-121 5-137 (137)
88 cd02070 corrinoid_protein_B12- 93.6 0.68 1.7E-05 26.3 10.1 98 4-104 84-192 (201)
89 cd02068 radical_SAM_B12_BD B12 93.2 0.77 2E-05 26.0 10.7 89 15-104 5-97 (127)
90 COG0313 Predicted methyltransf 93.0 0.7 1.8E-05 26.3 7.5 96 4-101 32-133 (275)
91 PRK09522 bifunctional anthrani 92.8 0.56 1.4E-05 26.9 6.8 80 3-83 2-87 (531)
92 COG0512 PabA Anthranilate/para 92.8 0.42 1.1E-05 27.6 6.2 80 3-83 2-84 (191)
93 PRK08017 short chain dehydroge 92.4 1 2.6E-05 25.3 9.1 56 1-56 1-56 (256)
94 pfam00563 EAL EAL domain. This 92.3 0.77 2E-05 26.0 6.9 93 11-104 130-233 (233)
95 cd02072 Glm_B12_BD B12 binding 91.9 1.2 2.9E-05 25.0 12.4 106 9-115 10-127 (128)
96 PRK10060 RNase II stability mo 90.9 1.5 3.7E-05 24.4 9.8 111 8-119 537-659 (663)
97 PRK06483 short chain dehydroge 90.7 1.5 3.9E-05 24.3 9.5 80 1-82 1-82 (236)
98 PRK07649 para-aminobenzoate/an 90.4 0.75 1.9E-05 26.1 5.3 78 5-83 2-82 (195)
99 PRK05670 anthranilate synthase 90.3 0.57 1.4E-05 26.8 4.6 78 5-83 2-82 (192)
100 COG2200 Rtn c-di-GMP phosphodi 90.1 1.7 4.4E-05 24.0 9.9 107 9-116 133-251 (256)
101 CHL00101 trpG anthranilate syn 90.0 0.8 2E-05 25.9 5.2 78 5-83 2-82 (190)
102 COG2185 Sbm Methylmalonyl-CoA 89.6 1.9 4.9E-05 23.7 12.9 109 9-119 23-138 (143)
103 PRK08007 para-aminobenzoate sy 89.3 0.86 2.2E-05 25.8 4.9 78 5-83 2-82 (187)
104 PRK03958 tRNA 2'-O-methylase; 89.1 2.1 5.3E-05 23.5 9.9 81 3-86 32-114 (175)
105 PRK00758 GMP synthase subunit 88.7 1.2 3.1E-05 24.8 5.4 75 4-83 1-77 (184)
106 PRK11359 cAMP phosphodiesteras 88.3 2.3 5.9E-05 23.2 10.0 108 10-118 676-795 (799)
107 cd02069 methionine_synthase_B1 88.3 2.3 6E-05 23.2 9.6 96 9-104 99-202 (213)
108 cd06342 PBP1_ABC_LIVBP_like Ty 88.2 2.4 6E-05 23.1 12.0 101 3-105 136-247 (334)
109 PRK06774 para-aminobenzoate sy 88.2 1.1 2.9E-05 25.1 4.9 78 5-83 2-82 (191)
110 PRK13117 consensus 88.2 2.1 5.3E-05 23.5 6.2 44 62-105 82-131 (268)
111 cd01743 GATase1_Anthranilate_S 88.0 0.87 2.2E-05 25.7 4.2 78 5-83 1-81 (184)
112 PRK13138 consensus 87.8 2.1 5.4E-05 23.4 6.1 54 62-115 78-142 (264)
113 cd06268 PBP1_ABC_transporter_L 87.8 2.5 6.5E-05 22.9 12.6 101 3-105 136-247 (298)
114 PRK07024 short chain dehydroge 87.7 2.5 6.5E-05 22.9 10.3 78 1-80 1-83 (256)
115 PRK09776 putative sensor prote 87.7 2.6 6.5E-05 22.9 9.3 107 7-114 993-1111(1116)
116 TIGR02855 spore_yabG sporulati 87.5 2.6 6.7E-05 22.9 7.1 102 1-104 112-235 (292)
117 PRK08857 para-aminobenzoate sy 87.5 1.1 2.9E-05 25.0 4.6 78 5-83 2-82 (192)
118 PRK10551 hypothetical protein; 87.4 2.7 6.8E-05 22.8 9.5 107 8-116 394-512 (518)
119 KOG1562 consensus 87.2 2.7 6.9E-05 22.8 7.0 64 4-67 147-216 (337)
120 cd02071 MM_CoA_mut_B12_BD meth 87.1 2.8 7E-05 22.7 12.6 107 9-115 10-121 (122)
121 COG1927 Mtd Coenzyme F420-depe 86.7 2.9 7.4E-05 22.6 10.0 101 14-115 19-132 (277)
122 cd01522 RHOD_1 Member of the R 86.3 2.6 6.6E-05 22.9 5.9 65 34-99 2-91 (117)
123 COG1568 Predicted methyltransf 86.0 0.79 2E-05 26.0 3.1 54 1-54 174-229 (354)
124 pfam05582 Peptidase_U57 YabG p 85.9 3.2 8.2E-05 22.3 10.0 96 2-98 105-222 (287)
125 PRK13119 consensus 85.8 2.9 7.5E-05 22.6 5.9 46 62-107 80-133 (261)
126 COG5012 Predicted cobalamin bi 85.8 3.2 8.3E-05 22.3 6.2 87 14-101 120-211 (227)
127 cd06358 PBP1_NHase Type I peri 85.6 3.3 8.4E-05 22.3 12.7 87 3-91 133-230 (333)
128 TIGR00631 uvrb excinuclease AB 85.5 3 7.6E-05 22.5 5.9 54 2-56 447-506 (667)
129 PRK00994 F420-dependent methyl 85.2 3.4 8.8E-05 22.1 10.2 97 18-115 23-131 (276)
130 cd06348 PBP1_ABC_ligand_bindin 85.1 3.5 8.9E-05 22.1 12.6 103 3-107 137-251 (344)
131 smart00052 EAL Putative diguan 84.8 2.4 6.1E-05 23.1 5.1 94 15-108 135-240 (241)
132 pfam01861 DUF43 Protein of unk 83.5 2.2 5.6E-05 23.3 4.5 62 2-65 67-130 (243)
133 PRK05718 keto-hydroxyglutarate 82.7 4.4 0.00011 21.5 11.8 101 14-116 4-106 (212)
134 cd01948 EAL EAL domain. This d 82.5 4 0.0001 21.8 5.5 91 16-107 135-238 (240)
135 PRK07765 para-aminobenzoate sy 82.3 4.6 0.00012 21.4 6.1 78 4-83 2-86 (221)
136 PRK10669 putative cation:proto 82.2 4.6 0.00012 21.4 10.2 105 3-118 441-547 (558)
137 pfam07688 KaiA KaiA domain. Th 82.1 4.6 0.00012 21.4 7.3 70 9-81 7-78 (283)
138 PRK08782 consensus 81.9 4.8 0.00012 21.3 11.9 100 15-116 7-108 (219)
139 PRK13116 consensus 81.6 4.9 0.00012 21.3 7.2 42 62-103 82-129 (278)
140 PRK13114 consensus 81.5 4.9 0.00012 21.2 7.3 42 62-103 78-125 (266)
141 KOG1203 consensus 81.4 5 0.00013 21.2 7.7 82 3-84 80-162 (411)
142 PRK08104 consensus 80.8 5.2 0.00013 21.1 10.0 95 19-115 9-105 (212)
143 pfam00290 Trp_syntA Tryptophan 80.7 5.2 0.00013 21.0 10.0 48 62-109 74-127 (258)
144 PRK13112 consensus 80.5 5.3 0.00013 21.0 7.0 46 62-107 83-134 (279)
145 PRK08904 consensus 80.1 5.5 0.00014 20.9 11.8 96 19-116 4-101 (207)
146 COG1634 Uncharacterized Rossma 79.8 5.6 0.00014 20.9 7.7 51 3-57 53-103 (232)
147 cd06335 PBP1_ABC_ligand_bindin 79.2 5.9 0.00015 20.8 12.7 93 3-97 139-242 (347)
148 PRK13118 consensus 79.2 5.9 0.00015 20.8 6.6 82 27-108 22-134 (269)
149 pfam01081 Aldolase KDPG and KH 79.0 5.9 0.00015 20.7 11.0 93 20-114 3-97 (196)
150 PRK13805 bifunctional acetalde 79.0 5.9 0.00015 20.7 6.0 63 3-68 483-558 (862)
151 PRK06857 consensus 78.7 6.1 0.00015 20.7 11.5 93 21-115 8-102 (209)
152 cd01844 SGNH_hydrolase_like_6 78.1 6.3 0.00016 20.6 6.6 60 23-83 28-102 (177)
153 PRK13111 trpA tryptophan synth 77.6 6.6 0.00017 20.5 7.1 41 62-103 74-120 (256)
154 cd01742 GATase1_GMP_Synthase T 77.6 6 0.00015 20.7 5.0 75 5-83 1-80 (181)
155 PRK10909 rsmD 16S rRNA m(2)G96 77.1 6.7 0.00017 20.4 5.6 23 4-26 77-99 (198)
156 COG4122 Predicted O-methyltran 77.1 6.8 0.00017 20.4 6.8 56 2-57 84-143 (219)
157 COG2109 BtuR ATP:corrinoid ade 77.0 6.8 0.00017 20.4 6.5 54 37-91 113-171 (198)
158 PRK05752 uroporphyrinogen-III 76.6 7 0.00018 20.3 13.6 106 2-119 130-252 (255)
159 pfam09936 DUF2168 Uncharacteri 76.2 7.1 0.00018 20.2 9.7 99 3-107 43-162 (185)
160 PRK09291 short chain dehydroge 76.2 7.2 0.00018 20.2 6.3 42 1-42 1-42 (257)
161 PRK13140 consensus 76.0 7.2 0.00018 20.2 7.1 45 62-107 79-131 (257)
162 PRK09140 2-dehydro-3-deoxy-6-p 75.9 7.3 0.00019 20.2 11.9 95 20-115 5-101 (206)
163 pfam00117 GATase Glutamine ami 75.5 6 0.00015 20.7 4.6 76 6-83 1-81 (187)
164 PRK13121 consensus 75.3 7.5 0.00019 20.1 6.7 48 62-109 82-135 (265)
165 TIGR00708 cobA cob(I)alamin ad 74.9 7.8 0.0002 20.0 5.7 54 37-91 105-163 (191)
166 COG0421 SpeE Spermidine syntha 74.8 7.8 0.0002 20.0 7.5 77 3-80 101-188 (282)
167 pfam01993 MTD methylene-5,6,7, 74.6 7.9 0.0002 20.0 10.3 97 18-115 22-131 (276)
168 PRK01372 ddl D-alanine--D-alan 74.5 7.9 0.0002 20.0 13.0 117 1-120 3-168 (304)
169 PRK13131 consensus 73.2 8.6 0.00022 19.8 7.0 42 62-103 75-122 (257)
170 PRK06015 keto-hydroxyglutarate 72.8 8.7 0.00022 19.7 12.1 99 16-116 6-106 (212)
171 cd04730 NPD_like 2-Nitropropan 72.8 8.7 0.00022 19.7 11.3 83 18-102 94-184 (236)
172 PRK07455 keto-hydroxyglutarate 72.7 8.7 0.00022 19.7 11.9 95 18-116 6-104 (210)
173 PRK11596 EAL domain-containing 70.6 9.8 0.00025 19.4 7.9 91 21-112 148-250 (255)
174 CHL00194 ycf39 Ycf39; Provisio 69.9 10 0.00026 19.3 5.6 35 4-38 2-37 (319)
175 COG0159 TrpA Tryptophan syntha 69.2 11 0.00027 19.2 7.3 48 62-109 82-137 (265)
176 cd06329 PBP1_SBP_like_3 Peripl 69.0 11 0.00027 19.2 11.1 82 2-85 143-238 (342)
177 CHL00162 thiG thiamin biosynth 68.4 11 0.00028 19.1 11.3 97 17-116 128-236 (267)
178 COG0742 N6-adenine-specific me 67.5 11 0.00029 19.0 6.2 52 3-54 67-122 (187)
179 PRK13124 consensus 67.5 11 0.00029 19.0 6.8 36 63-100 185-220 (257)
180 PRK13137 consensus 67.5 11 0.00029 19.0 5.7 45 62-107 89-141 (266)
181 cd04728 ThiG Thiazole synthase 67.4 11 0.00029 19.0 9.6 97 17-116 114-222 (248)
182 COG2179 Predicted hydrolase of 66.8 12 0.0003 19.0 8.6 106 12-119 49-155 (175)
183 KOG0780 consensus 66.6 12 0.0003 18.9 5.8 59 35-93 172-234 (483)
184 pfam01976 DUF116 Protein of un 66.0 12 0.00031 18.8 5.1 57 17-78 77-134 (158)
185 pfam01596 Methyltransf_3 O-met 65.8 12 0.00031 18.8 7.6 66 3-70 70-142 (204)
186 cd02065 B12-binding_like B12 b 65.7 12 0.00032 18.8 7.9 70 11-80 12-86 (125)
187 TIGR01497 kdpB K+-transporting 65.4 13 0.00032 18.8 5.4 83 32-117 411-504 (675)
188 PRK13942 protein-L-isoaspartat 65.2 7.8 0.0002 20.0 3.3 65 2-69 101-167 (214)
189 TIGR03471 HpnJ hopanoid biosyn 64.2 13 0.00034 18.6 7.4 38 47-84 69-107 (472)
190 TIGR01134 purF amidophosphorib 64.1 13 0.00034 18.6 4.4 32 3-35 361-398 (467)
191 PRK09423 gldA glycerol dehydro 63.9 13 0.00034 18.6 9.2 75 2-80 29-114 (366)
192 PRK13944 protein-L-isoaspartat 63.5 14 0.00035 18.6 5.0 63 4-69 99-164 (205)
193 PRK06482 short chain dehydroge 63.1 14 0.00035 18.5 10.1 81 1-83 1-86 (276)
194 PRK13120 consensus 62.9 14 0.00036 18.5 7.0 48 62-109 86-139 (285)
195 pfam02254 TrkA_N TrkA-N domain 62.4 14 0.00036 18.4 11.0 91 4-101 22-113 (115)
196 PRK06953 short chain dehydroge 62.3 14 0.00037 18.4 7.1 54 3-56 2-55 (222)
197 PRK13133 consensus 62.0 15 0.00037 18.4 5.6 42 62-103 80-131 (267)
198 TIGR02463 MPGP_rel mannosyl-3- 62.0 9.7 0.00025 19.4 3.3 33 64-98 24-56 (224)
199 PRK11574 hypothetical protein; 61.2 10 0.00026 19.4 3.3 71 1-71 1-95 (196)
200 TIGR00614 recQ_fam ATP-depende 60.8 15 0.00039 18.3 4.4 75 45-119 132-230 (497)
201 pfam05690 ThiG Thiazole biosyn 60.8 15 0.00039 18.3 11.1 97 17-116 113-221 (246)
202 cd01977 Nitrogenase_VFe_alpha 60.7 15 0.00039 18.3 9.9 69 2-74 288-360 (415)
203 PRK06737 acetolactate synthase 60.2 7.6 0.00019 20.1 2.5 72 1-80 1-73 (76)
204 PRK05693 short chain dehydroge 60.1 16 0.0004 18.2 9.1 76 3-80 2-78 (274)
205 PRK00208 thiG thiazole synthas 59.9 16 0.0004 18.2 10.8 83 17-102 115-204 (256)
206 PRK13135 consensus 59.5 16 0.00041 18.1 7.0 41 62-103 82-128 (267)
207 KOG0189 consensus 59.4 14 0.00036 18.5 3.8 68 14-81 34-106 (261)
208 PRK13113 consensus 59.3 16 0.00041 18.1 6.7 44 62-105 82-131 (263)
209 PRK11840 bifunctional sulfur c 59.1 16 0.00042 18.1 9.8 98 17-117 189-298 (327)
210 PRK10310 galactitol-specific P 59.1 16 0.00042 18.1 5.0 79 1-93 1-89 (94)
211 COG2022 ThiG Uncharacterized e 58.7 17 0.00042 18.0 8.7 83 18-103 122-211 (262)
212 PRK00312 pcm protein-L-isoaspa 58.5 17 0.00043 18.0 5.1 76 1-82 99-176 (213)
213 PRK05298 excinuclease ABC subu 57.6 17 0.00044 17.9 5.7 50 2-51 446-501 (657)
214 pfam03602 Cons_hypoth95 Conser 57.6 17 0.00044 17.9 5.9 23 32-54 52-74 (181)
215 cd00452 KDPG_aldolase KDPG and 57.3 18 0.00045 17.9 10.1 24 8-31 11-34 (190)
216 PRK04128 1-(5-phosphoribosyl)- 57.2 18 0.00045 17.9 8.3 73 26-101 136-209 (228)
217 TIGR01458 HAD-SF-IIA-hyp3 HAD- 56.9 18 0.00045 17.9 4.1 54 11-64 48-106 (258)
218 cd06355 PBP1_FmdD_like Peripla 56.8 18 0.00046 17.9 10.2 70 3-74 134-214 (348)
219 COG0118 HisH Glutamine amidotr 56.4 18 0.00046 17.8 4.5 71 3-83 2-84 (204)
220 cd06349 PBP1_ABC_ligand_bindin 56.3 18 0.00046 17.8 12.6 101 3-105 136-247 (340)
221 pfam01564 Spermine_synth Sperm 56.2 18 0.00047 17.8 6.4 76 3-79 100-186 (240)
222 cd06327 PBP1_SBP_like_1 Peripl 56.2 18 0.00047 17.8 12.3 101 3-105 136-248 (334)
223 PRK01130 N-acetylmannosamine-6 55.9 18 0.00047 17.8 13.8 104 12-118 105-220 (222)
224 pfam01135 PCMT Protein-L-isoas 55.8 18 0.00046 17.8 3.8 63 4-69 100-164 (205)
225 PRK13943 protein-L-isoaspartat 55.7 12 0.00031 18.9 2.9 65 3-70 101-167 (317)
226 PRK03612 spermidine synthase; 55.3 19 0.00048 17.7 8.2 75 3-80 318-409 (516)
227 cd04724 Tryptophan_synthase_al 55.2 19 0.00048 17.7 6.4 41 62-103 65-111 (242)
228 cd06273 PBP1_GntR_like_1 This 54.8 19 0.00049 17.7 9.2 63 13-80 16-84 (268)
229 cd01542 PBP1_TreR_like Ligand- 54.6 19 0.0005 17.6 9.0 62 14-80 17-84 (259)
230 cd03823 GT1_ExpE7_like This fa 54.6 19 0.0005 17.6 9.6 53 61-120 277-329 (359)
231 cd03115 SRP The signal recogni 54.5 19 0.0005 17.6 10.7 101 3-103 29-148 (173)
232 PRK03659 glutathione-regulated 54.4 20 0.0005 17.6 9.3 96 3-106 424-521 (602)
233 pfam10087 DUF2325 Uncharacteri 54.4 20 0.0005 17.6 9.1 86 4-92 1-91 (96)
234 cd01534 4RHOD_Repeat_3 Member 54.3 14 0.00036 18.5 3.1 69 34-102 2-86 (95)
235 cd06326 PBP1_STKc_like Type I 53.7 20 0.00051 17.6 12.5 89 3-93 137-236 (336)
236 COG1856 Uncharacterized homolo 53.7 20 0.00051 17.6 7.6 99 7-107 118-255 (275)
237 PRK06552 keto-hydroxyglutarate 53.3 20 0.00052 17.5 12.3 98 18-116 6-107 (209)
238 COG0556 UvrB Helicase subunit 52.4 21 0.00054 17.4 6.0 82 2-83 446-556 (663)
239 cd06347 PBP1_ABC_ligand_bindin 52.1 21 0.00054 17.4 12.5 102 3-106 136-249 (334)
240 COG1303 Uncharacterized protei 52.1 21 0.00054 17.4 8.5 76 3-83 33-111 (179)
241 PRK13587 1-(5-phosphoribosyl)- 51.5 22 0.00056 17.3 8.8 70 34-104 149-223 (234)
242 pfam02882 THF_DHG_CYH_C Tetrah 51.3 22 0.00056 17.3 5.2 57 2-59 36-92 (159)
243 PRK13523 NADPH dehydrogenase N 50.9 22 0.00057 17.3 6.3 43 57-100 257-301 (337)
244 PHA02518 ParA-like protein; Pr 50.9 22 0.00057 17.3 5.0 73 2-80 29-106 (211)
245 pfam00982 Glyco_transf_20 Glyc 50.7 18 0.00047 17.8 3.2 42 74-120 395-436 (470)
246 TIGR01182 eda 2-dehydro-3-deox 49.9 23 0.00059 17.2 8.6 80 29-110 13-94 (205)
247 cd06299 PBP1_LacI_like_13 Liga 49.7 23 0.00059 17.2 8.8 62 14-80 17-84 (265)
248 PRK09426 methylmalonyl-CoA mut 49.6 23 0.0006 17.2 13.3 113 4-118 584-711 (715)
249 cd06285 PBP1_LacI_like_7 Ligan 49.2 24 0.00061 17.1 9.4 63 13-80 16-84 (265)
250 PRK12703 tRNA 2'-O-methylase; 48.9 24 0.00061 17.1 7.9 74 3-83 31-106 (339)
251 KOG2550 consensus 48.7 24 0.00062 17.1 6.9 93 4-100 204-317 (503)
252 cd04509 PBP1_ABC_transporter_G 48.6 24 0.00062 17.1 12.3 101 3-105 137-250 (299)
253 cd06341 PBP1_ABC_ligand_bindin 48.4 24 0.00062 17.0 11.7 89 2-92 133-232 (341)
254 PRK08263 short chain dehydroge 48.3 25 0.00063 17.0 10.3 80 1-80 2-83 (275)
255 PRK03562 glutathione-regulated 48.2 25 0.00063 17.0 9.0 96 3-106 423-520 (615)
256 pfam00448 SRP54 SRP54-type pro 47.9 25 0.00063 17.0 11.7 100 2-103 29-149 (196)
257 pfam03698 UPF0180 Uncharacteri 47.9 25 0.00063 17.0 5.4 67 15-93 10-76 (80)
258 PRK00025 lpxB lipid-A-disaccha 47.9 25 0.00063 17.0 5.6 39 41-82 80-119 (382)
259 cd01541 PBP1_AraR Ligand-bindi 47.7 25 0.00064 17.0 9.1 67 13-82 16-91 (273)
260 pfam00148 Oxidored_nitro Nitro 47.6 25 0.00064 17.0 6.0 84 2-97 272-360 (398)
261 cd06333 PBP1_ABC-type_HAAT_lik 47.5 25 0.00064 17.0 11.6 88 3-92 134-232 (312)
262 PRK13243 glyoxylate reductase; 47.5 25 0.00064 17.0 7.6 93 1-105 1-99 (333)
263 cd06282 PBP1_GntR_like_2 Ligan 46.7 26 0.00066 16.9 9.7 64 13-80 16-85 (266)
264 cd01825 SGNH_hydrolase_peri1 S 46.4 26 0.00067 16.9 5.5 59 26-84 24-106 (189)
265 pfam02572 CobA_CobO_BtuR ATP:c 46.3 26 0.00067 16.8 4.6 46 41-87 91-141 (172)
266 PRK02645 ppnK inorganic polyph 46.3 26 0.00067 16.8 9.7 76 1-81 1-88 (304)
267 PRK07589 ornithine cyclodeamin 45.7 27 0.00069 16.8 5.8 40 3-42 155-194 (346)
268 PRK10901 16S rRNA methyltransf 45.4 27 0.00069 16.8 5.2 53 3-55 270-323 (428)
269 cd06346 PBP1_ABC_ligand_bindin 45.4 27 0.00069 16.8 14.3 104 3-108 138-253 (312)
270 TIGR03407 urea_ABC_UrtA urea A 45.4 27 0.00069 16.8 9.8 72 3-76 135-217 (359)
271 PRK12743 acetoin dehydrogenase 45.3 27 0.0007 16.8 9.5 80 1-80 1-86 (253)
272 PRK05928 hemD uroporphyrinogen 45.2 27 0.0007 16.7 11.2 109 2-119 126-251 (252)
273 TIGR01754 flav_RNR ribonucleot 44.9 28 0.00071 16.7 4.0 73 11-83 14-95 (145)
274 PRK06182 short chain dehydroge 44.5 28 0.00072 16.7 9.1 78 1-80 1-80 (273)
275 PRK09860 putative alcohol dehy 44.3 28 0.00072 16.7 6.0 79 3-84 32-140 (383)
276 COG2265 TrmA SAM-dependent met 44.2 28 0.00072 16.7 9.2 101 3-106 316-422 (432)
277 COG2236 Predicted phosphoribos 43.7 16 0.00042 18.1 2.0 24 2-25 87-110 (192)
278 cd06345 PBP1_ABC_ligand_bindin 43.7 29 0.00074 16.6 12.2 85 3-89 145-240 (344)
279 PRK11119 proX glycine betaine 43.2 29 0.00075 16.6 4.4 50 9-59 40-91 (332)
280 cd01080 NAD_bind_m-THF_DH_Cycl 43.0 30 0.00076 16.5 5.2 57 2-59 44-100 (168)
281 pfam03808 Glyco_tran_WecB Glyc 43.0 30 0.00076 16.5 10.3 77 3-82 49-134 (172)
282 cd06360 PBP1_alkylbenzenes_lik 42.6 30 0.00077 16.5 13.0 112 3-116 135-266 (336)
283 TIGR02400 trehalose_OtsA alpha 42.5 30 0.00077 16.5 4.5 58 57-120 382-442 (476)
284 KOG3040 consensus 42.4 30 0.00077 16.5 4.1 55 10-64 48-107 (262)
285 PRK11829 biofilm formation reg 42.2 30 0.00078 16.5 10.4 102 8-113 603-719 (728)
286 cd05212 NAD_bind_m-THF_DH_Cycl 42.2 30 0.00078 16.5 5.9 57 2-59 28-84 (140)
287 PRK13175 consensus 42.2 31 0.00078 16.5 4.5 71 3-83 2-84 (206)
288 TIGR00619 sbcd nuclease SbcCD, 42.2 31 0.00078 16.5 5.2 55 37-91 39-102 (275)
289 PRK10624 L-1,2-propanediol oxi 42.1 31 0.00078 16.5 6.9 64 3-69 30-106 (381)
290 PRK07413 hypothetical protein; 42.0 31 0.00078 16.4 7.0 41 42-83 301-346 (382)
291 PRK11557 putative DNA-binding 41.3 32 0.0008 16.4 9.3 84 8-92 140-224 (282)
292 PRK13561 putative phosphodiest 41.2 32 0.00081 16.4 9.9 100 11-113 532-646 (651)
293 cd01523 RHOD_Lact_B Member of 41.1 32 0.00081 16.4 4.9 23 34-57 2-24 (100)
294 cd04824 eu_ALAD_PBGS_cysteine_ 41.0 32 0.00081 16.3 4.7 63 33-98 222-287 (320)
295 cd01524 RHOD_Pyr_redox Member 41.0 32 0.00081 16.3 4.4 54 48-101 13-80 (90)
296 PRK13139 consensus 40.8 32 0.00082 16.3 7.2 43 62-105 81-129 (254)
297 COG1454 EutG Alcohol dehydroge 40.8 32 0.00082 16.3 6.8 64 3-69 30-106 (377)
298 COG1091 RfbD dTDP-4-dehydrorha 40.6 32 0.00082 16.3 6.3 60 1-63 1-67 (281)
299 TIGR03414 ABC_choline_bnd chol 40.5 32 0.00083 16.3 5.8 52 10-62 19-71 (290)
300 PRK13143 hisH imidazole glycer 40.4 33 0.00083 16.3 4.8 72 3-84 2-83 (201)
301 cd06271 PBP1_AglR_RafR_like Li 40.3 33 0.00083 16.3 8.9 63 13-80 20-88 (268)
302 cd03421 SirA_like_N SirA_like_ 40.2 33 0.00084 16.3 4.0 33 4-36 27-59 (67)
303 PRK13180 consensus 40.1 33 0.00084 16.3 4.7 51 3-63 2-52 (209)
304 PRK00811 spermidine synthase; 40.1 33 0.00084 16.3 9.1 77 3-80 103-191 (283)
305 cd02991 UAS_ETEA UAS family, E 40.0 33 0.00084 16.3 4.2 71 37-120 44-115 (116)
306 PRK00162 glpE thiosulfate sulf 40.0 33 0.00084 16.3 6.8 65 33-99 7-85 (104)
307 pfam04392 ABC_sub_bind ABC tra 39.9 33 0.00085 16.2 8.0 15 14-28 16-30 (292)
308 pfam02684 LpxB Lipid-A-disacch 39.9 33 0.00085 16.2 5.5 36 42-82 78-116 (373)
309 PRK11121 nrdG anaerobic ribonu 39.5 34 0.00086 16.2 4.0 46 62-107 86-133 (154)
310 cd06289 PBP1_MalI_like Ligand- 39.3 34 0.00086 16.2 9.1 63 13-80 16-85 (268)
311 PRK09739 hypothetical protein; 39.0 34 0.00087 16.2 4.5 32 2-33 3-41 (201)
312 PRK08945 short chain dehydroge 38.7 35 0.00089 16.1 9.8 80 2-81 13-100 (245)
313 PRK03094 hypothetical protein; 38.6 35 0.00089 16.1 5.3 64 15-93 10-76 (80)
314 COG0077 PheA Prephenate dehydr 38.6 35 0.00089 16.1 5.0 107 7-116 101-214 (279)
315 PRK12384 sorbitol-6-phosphate 38.4 35 0.00089 16.1 10.2 80 1-80 1-87 (259)
316 pfam02423 OCD_Mu_crystall Orni 38.3 35 0.0009 16.1 5.5 45 3-52 155-199 (312)
317 PRK09072 short chain dehydroge 38.2 35 0.0009 16.1 9.8 77 2-80 5-85 (262)
318 PRK09590 celB cellobiose phosp 37.9 36 0.00091 16.1 5.4 61 12-80 15-81 (104)
319 PRK05986 cob(I)yrinic acid a,c 37.9 36 0.00091 16.1 5.6 53 36-89 100-161 (190)
320 PRK13585 1-(5-phosphoribosyl)- 37.5 36 0.00092 16.0 7.6 81 34-115 149-239 (240)
321 PRK06823 ornithine cyclodeamin 37.4 36 0.00093 16.0 5.7 40 3-42 154-193 (315)
322 cd02042 ParA ParA and ParB of 37.4 26 0.00066 16.9 2.2 53 15-80 17-69 (104)
323 PRK01395 V-type ATP synthase s 37.2 37 0.00093 16.0 8.1 75 1-84 2-81 (104)
324 cd06298 PBP1_CcpA_like Ligand- 37.0 37 0.00094 16.0 9.0 62 14-80 17-84 (268)
325 COG0518 GuaA GMP synthase - Gl 36.9 37 0.00095 16.0 3.2 86 3-89 2-93 (198)
326 TIGR02057 PAPS_reductase phosp 36.8 17 0.00042 18.0 1.2 56 31-86 10-70 (239)
327 pfam00465 Fe-ADH Iron-containi 36.5 38 0.00096 15.9 7.2 65 2-69 22-99 (312)
328 cd02990 UAS_FAF1 UAS family, F 36.5 38 0.00096 15.9 5.9 85 15-120 50-135 (136)
329 pfam00977 His_biosynth Histidi 36.4 38 0.00096 15.9 8.5 66 36-102 150-219 (229)
330 cd06277 PBP1_LacI_like_1 Ligan 36.3 38 0.00096 15.9 9.9 92 12-109 18-132 (268)
331 PRK08251 short chain dehydroge 36.2 38 0.00097 15.9 9.7 80 2-81 2-88 (248)
332 TIGR00064 ftsY signal recognit 35.9 38 0.00098 15.9 6.6 101 2-103 110-238 (284)
333 TIGR02483 PFK_mixed phosphofru 35.8 27 0.0007 16.7 2.2 103 14-120 94-225 (339)
334 PRK11895 ilvH acetolactate syn 35.7 39 0.00099 15.8 3.1 32 1-32 1-33 (161)
335 PRK01581 speE spermidine synth 35.6 39 0.00099 15.8 7.4 78 3-82 164-258 (363)
336 PRK12938 acetyacetyl-CoA reduc 35.5 39 0.001 15.8 9.5 82 1-82 1-89 (246)
337 cd06336 PBP1_ABC_ligand_bindin 35.3 39 0.001 15.8 11.6 90 3-93 139-239 (347)
338 PRK00074 guaA GMP synthase; Re 35.1 40 0.001 15.8 5.9 50 2-52 4-53 (513)
339 PRK11790 D-3-phosphoglycerate 35.0 40 0.001 15.8 6.5 91 4-106 12-107 (409)
340 cd06338 PBP1_ABC_ligand_bindin 34.9 40 0.001 15.8 12.1 85 3-89 142-238 (345)
341 cd00886 MogA_MoaB MogA_MoaB fa 34.9 40 0.001 15.8 6.6 52 2-53 2-68 (152)
342 cd03788 GT1_TPS Trehalose-6-Ph 34.8 34 0.00087 16.2 2.5 42 73-120 386-427 (460)
343 PRK13123 consensus 34.8 40 0.001 15.8 9.7 41 63-103 78-124 (256)
344 cd05013 SIS_RpiR RpiR-like pro 34.7 40 0.001 15.7 8.8 87 3-92 14-105 (139)
345 PRK12824 acetoacetyl-CoA reduc 34.7 40 0.001 15.7 10.0 80 1-80 1-86 (245)
346 KOG0781 consensus 34.5 23 0.00058 17.2 1.6 53 3-55 407-475 (587)
347 cd06296 PBP1_CatR_like Ligand- 34.1 41 0.001 15.7 9.4 62 14-80 17-84 (270)
348 pfam07015 VirC1 VirC1 protein. 33.9 41 0.0011 15.7 4.0 51 2-54 30-91 (231)
349 TIGR00693 thiE thiamine-phosph 33.8 42 0.0011 15.7 4.8 68 31-99 111-190 (210)
350 TIGR02279 PaaC-3OHAcCoADH 3-hy 33.7 42 0.0011 15.7 5.1 57 6-62 306-382 (508)
351 pfam08415 NRPS Nonribosomal pe 33.7 42 0.0011 15.6 3.7 30 58-87 3-36 (57)
352 cd02809 alpha_hydroxyacid_oxid 33.7 42 0.0011 15.6 9.2 75 27-103 120-200 (299)
353 cd06334 PBP1_ABC_ligand_bindin 33.6 42 0.0011 15.6 13.1 90 3-94 141-241 (351)
354 COG1222 RPT1 ATP-dependent 26S 33.6 42 0.0011 15.6 3.5 110 10-121 268-396 (406)
355 PRK10792 bifunctional 5,10-met 33.4 42 0.0011 15.6 4.9 64 5-68 38-114 (288)
356 TIGR00438 rrmJ ribosomal RNA l 33.3 42 0.0011 15.6 5.3 70 36-115 86-161 (192)
357 TIGR03669 urea_ABC_arch urea A 33.2 43 0.0011 15.6 9.9 80 3-84 134-224 (374)
358 COG2061 ACT-domain-containing 33.1 43 0.0011 15.6 9.2 57 5-62 53-129 (170)
359 PRK13849 putative crown gall t 32.8 43 0.0011 15.6 3.8 51 2-54 30-91 (231)
360 cd05566 PTS_IIB_galactitol PTS 32.8 43 0.0011 15.6 8.4 77 3-94 1-87 (89)
361 cd06290 PBP1_LacI_like_9 Ligan 32.6 43 0.0011 15.5 8.7 40 13-52 16-61 (265)
362 pfam06506 PrpR_N Propionate ca 32.6 43 0.0011 15.5 12.6 109 5-119 11-121 (169)
363 KOG1601 consensus 32.6 6.1 0.00016 20.6 -1.6 103 6-108 19-127 (340)
364 cd05567 PTS_IIB_mannitol PTS_I 32.5 44 0.0011 15.5 6.1 68 12-91 15-82 (87)
365 COG2518 Pcm Protein-L-isoaspar 32.5 44 0.0011 15.5 2.9 65 3-70 95-161 (209)
366 cd01981 Pchlide_reductase_B Pc 32.3 44 0.0011 15.5 7.8 79 2-89 301-384 (430)
367 TIGR01090 apt adenine phosphor 32.3 44 0.0011 15.5 4.0 33 2-34 114-149 (175)
368 COG0702 Predicted nucleoside-d 32.3 44 0.0011 15.5 4.4 52 4-56 2-53 (275)
369 PTZ00314 inosine-5'-monophosph 31.3 46 0.0012 15.4 7.7 66 36-102 240-306 (499)
370 cd00561 CobA_CobO_BtuR ATP:cor 31.3 46 0.0012 15.4 6.5 49 41-90 90-143 (159)
371 cd06292 PBP1_LacI_like_10 Liga 31.1 46 0.0012 15.4 8.9 93 13-107 16-134 (273)
372 TIGR00078 nadC nicotinate-nucl 31.0 46 0.0012 15.4 10.0 83 14-102 172-259 (276)
373 COG2216 KdpB High-affinity K+ 31.0 46 0.0012 15.4 5.1 51 63-116 454-504 (681)
374 cd06274 PBP1_FruR Ligand bindi 30.8 47 0.0012 15.4 9.1 37 16-52 19-61 (264)
375 PRK11036 putative metallothion 30.8 47 0.0012 15.4 9.5 116 2-117 66-198 (256)
376 PRK11337 DNA-binding transcrip 30.7 47 0.0012 15.4 10.6 82 8-92 149-233 (293)
377 PRK03379 vitamin B12-transport 30.7 47 0.0012 15.3 6.9 61 56-117 59-121 (265)
378 TIGR00959 ffh signal recogniti 30.6 47 0.0012 15.3 3.0 97 3-106 133-258 (439)
379 cd01834 SGNH_hydrolase_like_2 30.6 47 0.0012 15.3 7.8 81 2-82 1-112 (191)
380 PRK07707 consensus 30.4 47 0.0012 15.3 10.2 44 1-44 1-45 (239)
381 TIGR00075 hypD hydrogenase exp 30.2 48 0.0012 15.3 3.9 67 21-93 118-192 (384)
382 PRK09922 UDP-D-galactose:(gluc 30.2 48 0.0012 15.3 4.1 53 63-121 275-327 (361)
383 TIGR01855 IMP_synth_hisH imida 29.9 48 0.0012 15.3 6.5 69 5-83 1-86 (211)
384 cd06275 PBP1_PurR Ligand-bindi 29.8 49 0.0012 15.3 9.2 39 14-52 17-61 (269)
385 PRK06141 ornithine cyclodeamin 29.6 49 0.0012 15.2 5.5 40 3-42 151-190 (313)
386 pfam03345 DDOST_48kD Oligosacc 29.5 44 0.0011 15.5 2.4 97 2-98 16-121 (439)
387 PRK05565 fabG 3-ketoacyl-(acyl 29.3 50 0.0013 15.2 10.3 81 2-82 5-91 (247)
388 pfam00497 SBP_bac_3 Bacterial 29.3 50 0.0013 15.2 5.9 49 3-53 111-159 (224)
389 PRK06197 short chain dehydroge 29.3 50 0.0013 15.2 9.7 79 2-80 16-101 (306)
390 PRK07453 protochlorophyllide o 29.2 50 0.0013 15.2 9.2 36 3-38 7-43 (322)
391 COG0190 FolD 5,10-methylene-te 29.1 50 0.0013 15.2 4.8 66 4-69 34-112 (283)
392 PRK12335 tellurite resistance 29.1 50 0.0013 15.2 4.9 52 20-71 138-214 (289)
393 cd04723 HisA_HisF Phosphoribos 29.1 50 0.0013 15.2 9.2 68 34-102 147-217 (233)
394 cd06331 PBP1_AmiC_like Type I 29.0 50 0.0013 15.2 12.0 70 3-74 133-213 (333)
395 cd06270 PBP1_GalS_like Ligand 29.0 50 0.0013 15.2 9.1 37 15-51 18-60 (268)
396 cd01130 VirB11-like_ATPase Typ 29.0 37 0.00095 15.9 1.9 102 3-119 53-167 (186)
397 PRK04965 nitric oxide reductas 28.7 43 0.0011 15.5 2.2 75 46-120 99-195 (378)
398 cd04734 OYE_like_3_FMN Old yel 28.7 51 0.0013 15.1 7.5 40 61-101 273-312 (343)
399 pfam03830 PTSIIB_sorb PTS syst 28.7 51 0.0013 15.1 4.2 71 3-80 27-103 (151)
400 PRK09482 xni exonuclease IX; P 28.7 51 0.0013 15.1 6.8 113 1-117 1-118 (256)
401 PRK07053 glutamine amidotransf 28.7 30 0.00077 16.5 1.4 83 1-83 1-93 (235)
402 PRK11188 rrmJ 23S rRNA methylt 28.5 51 0.0013 15.1 5.6 30 40-70 111-140 (209)
403 cd06294 PBP1_ycjW_transcriptio 28.4 51 0.0013 15.1 9.4 63 13-80 21-89 (270)
404 cd04468 S1_eIF5A S1_eIF5A: Euk 28.4 51 0.0013 15.1 3.0 33 52-87 27-62 (69)
405 COG2519 GCD14 tRNA(1-methylade 28.2 52 0.0013 15.1 6.6 91 3-98 120-214 (256)
406 COG1819 Glycosyl transferases, 28.1 52 0.0013 15.1 8.4 103 13-121 252-369 (406)
407 cd06267 PBP1_LacI_sugar_bindin 28.0 52 0.0013 15.1 9.2 39 14-52 17-61 (264)
408 cd06283 PBP1_RegR_EndR_KdgR_li 27.9 53 0.0013 15.0 9.1 62 14-80 17-84 (267)
409 PRK08643 acetoin reductase; Va 27.7 53 0.0014 15.0 9.9 79 1-79 1-84 (256)
410 TIGR03365 Bsubt_queE 7-cyano-7 27.5 53 0.0014 15.0 8.3 96 5-104 76-184 (238)
411 cd02440 AdoMet_MTases S-adenos 27.5 53 0.0014 15.0 8.8 78 3-81 22-103 (107)
412 PRK06843 inositol-5-monophosph 27.5 53 0.0014 15.0 7.7 62 40-102 159-221 (404)
413 cd06533 Glyco_transf_WecG_TagA 27.5 53 0.0014 15.0 9.3 77 3-82 47-132 (171)
414 cd02012 TPP_TK Thiamine pyroph 27.4 54 0.0014 15.0 5.1 21 49-69 132-152 (255)
415 PRK09271 flavodoxin; Provision 27.2 54 0.0014 15.0 7.4 81 5-86 3-96 (160)
416 PRK13835 conjugal transfer pro 27.1 54 0.0014 15.0 3.8 32 3-34 58-89 (144)
417 PRK00652 lpxK tetraacyldisacch 26.9 55 0.0014 14.9 4.8 29 25-53 120-148 (334)
418 PRK13134 consensus 26.7 55 0.0014 14.9 6.6 36 72-107 93-136 (257)
419 PRK03220 consensus 26.7 55 0.0014 14.9 10.0 81 36-117 162-252 (257)
420 cd06330 PBP1_Arsenic_SBP_like 26.5 56 0.0014 14.9 11.5 78 3-82 139-231 (346)
421 cd06278 PBP1_LacI_like_2 Ligan 26.4 56 0.0014 14.9 9.1 18 102-119 153-170 (266)
422 cd02117 NifH_like This family 26.4 56 0.0014 14.9 4.8 14 1-14 27-40 (212)
423 cd04729 NanE N-acetylmannosami 26.4 56 0.0014 14.9 11.5 69 32-102 130-205 (219)
424 TIGR01425 SRP54_euk signal rec 26.3 56 0.0014 14.9 5.0 69 35-103 192-269 (453)
425 PRK13337 putative lipid kinase 26.2 56 0.0014 14.9 7.7 82 1-86 1-97 (305)
426 TIGR02012 tigrfam_recA protein 26.0 55 0.0014 14.9 2.4 51 5-55 86-142 (322)
427 cd01444 GlpE_ST GlpE sulfurtra 25.9 57 0.0015 14.8 4.2 64 34-98 3-82 (96)
428 cd06337 PBP1_ABC_ligand_bindin 25.8 57 0.0015 14.8 11.0 86 3-90 146-246 (357)
429 PRK11059 regulatory protein Cs 25.7 58 0.0015 14.8 9.5 96 10-106 532-640 (642)
430 PRK05884 short chain dehydroge 25.7 58 0.0015 14.8 7.2 52 4-55 2-54 (223)
431 cd02040 NifH NifH gene encodes 25.6 58 0.0015 14.8 5.9 12 1-12 28-39 (270)
432 PRK06123 short chain dehydroge 25.6 58 0.0015 14.8 9.6 81 1-81 2-88 (249)
433 PRK13125 trpA tryptophan synth 25.6 58 0.0015 14.8 11.8 97 5-103 108-217 (247)
434 PRK08177 short chain dehydroge 25.5 58 0.0015 14.8 7.2 54 2-55 1-55 (225)
435 pfam12588 PSDC Phophatidylseri 25.5 39 0.001 15.8 1.5 60 7-66 11-93 (140)
436 cd01748 GATase1_IGP_Synthase T 25.5 58 0.0015 14.8 6.6 69 5-83 1-81 (198)
437 PRK09177 xanthine-guanine phos 25.5 51 0.0013 15.1 2.1 21 60-80 95-115 (156)
438 COG0167 PyrD Dihydroorotate de 25.4 58 0.0015 14.8 7.4 59 63-121 229-295 (310)
439 pfam01408 GFO_IDH_MocA Oxidore 25.3 59 0.0015 14.8 4.9 100 5-115 3-107 (120)
440 cd01976 Nitrogenase_MoFe_alpha 25.0 59 0.0015 14.7 8.8 76 3-86 301-380 (421)
441 TIGR00089 TIGR00089 RNA modifi 24.6 60 0.0015 14.7 9.0 98 11-119 12-118 (455)
442 PRK01033 imidazole glycerol ph 24.5 61 0.0015 14.7 8.4 65 36-101 155-224 (253)
443 cd00223 TOPRIM_TopoIIB_SPO TOP 24.3 61 0.0016 14.7 4.7 22 3-24 1-22 (160)
444 cd06344 PBP1_ABC_ligand_bindin 24.3 61 0.0016 14.7 12.2 102 3-106 135-249 (332)
445 KOG4175 consensus 24.3 61 0.0016 14.7 5.1 76 36-111 35-138 (268)
446 smart00852 MoCF_biosynth Proba 24.2 61 0.0016 14.6 6.4 46 11-56 16-67 (135)
447 KOG3035 consensus 24.1 62 0.0016 14.6 5.6 83 34-118 49-157 (245)
448 TIGR01124 ilvA_2Cterm threonin 24.0 62 0.0016 14.6 10.6 91 4-98 115-218 (508)
449 cd01575 PBP1_GntR Ligand-bindi 23.9 62 0.0016 14.6 9.3 63 13-80 16-84 (268)
450 TIGR01511 ATPase-IB1_Cu copper 23.8 62 0.0016 14.6 5.4 61 54-116 369-430 (545)
451 cd01532 4RHOD_Repeat_1 Member 23.7 63 0.0016 14.6 3.6 27 73-99 49-79 (92)
452 COG0621 MiaB 2-methylthioadeni 23.6 63 0.0016 14.6 8.7 98 11-119 15-116 (437)
453 pfam06925 MGDG_synth Monogalac 23.6 63 0.0016 14.6 3.7 59 39-103 82-144 (169)
454 COG4221 Short-chain alcohol de 23.3 64 0.0016 14.5 9.6 79 3-81 7-88 (246)
455 TIGR01331 bisphos_cysQ 3'(2'), 23.2 51 0.0013 15.2 1.7 40 64-106 48-87 (263)
456 PRK13597 imidazole glycerol ph 23.2 64 0.0016 14.5 9.5 70 45-115 165-243 (252)
457 PRK07825 short chain dehydroge 23.0 65 0.0017 14.5 9.2 79 2-80 5-84 (273)
458 cd00218 GlcAT-I Beta1,3-glucur 23.0 65 0.0017 14.5 6.0 68 5-72 34-120 (223)
459 TIGR02717 AcCoA-syn-alpha acet 23.0 65 0.0017 14.5 6.8 61 36-97 195-257 (457)
460 cd06280 PBP1_LacI_like_4 Ligan 22.9 65 0.0017 14.5 9.2 63 13-81 16-84 (263)
461 pfam04069 OpuAC Substrate bind 22.9 65 0.0017 14.5 5.2 44 10-53 12-57 (256)
462 PRK13170 hisH imidazole glycer 22.9 65 0.0017 14.5 4.4 50 4-63 2-51 (196)
463 TIGR00417 speE spermidine synt 22.9 65 0.0017 14.5 4.9 78 3-80 100-193 (284)
464 PRK07003 DNA polymerase III su 22.9 65 0.0017 14.5 8.0 75 45-121 118-194 (816)
465 TIGR02168 SMC_prok_B chromosom 22.8 65 0.0017 14.5 6.4 69 29-98 1099-1177(1191)
466 pfam07364 DUF1485 Protein of u 22.8 65 0.0017 14.5 11.1 98 19-117 51-176 (292)
467 cd06340 PBP1_ABC_ligand_bindin 22.8 66 0.0017 14.5 11.1 101 3-105 145-258 (347)
468 PRK06196 oxidoreductase; Provi 22.7 66 0.0017 14.5 8.7 52 3-54 27-80 (316)
469 TIGR02102 pullulan_Gpos pullul 22.6 39 0.001 15.8 1.1 48 1-53 637-689 (1164)
470 cd00079 HELICc Helicase superf 22.6 66 0.0017 14.5 6.4 88 25-119 27-121 (131)
471 TIGR00888 guaA_Nterm GMP synth 22.5 25 0.00065 16.9 0.1 76 5-83 1-80 (195)
472 PRK07315 fructose-bisphosphate 22.4 67 0.0017 14.4 6.5 28 74-101 77-104 (293)
473 cd02932 OYE_YqiM_FMN Old yello 22.3 67 0.0017 14.4 7.7 45 56-101 271-317 (336)
474 PRK07414 cob(I)yrinic acid a,c 22.3 67 0.0017 14.4 6.8 48 39-87 108-160 (178)
475 TIGR01122 ilvE_I branched-chai 22.2 67 0.0017 14.4 2.5 46 73-122 37-82 (302)
476 KOG2794 consensus 22.0 68 0.0017 14.4 5.2 49 46-97 254-302 (340)
477 cd00001 PTS_IIB_man PTS_IIB, P 21.9 68 0.0017 14.4 5.4 73 3-82 26-104 (151)
478 cd00381 IMPDH IMPDH: The catal 21.9 68 0.0017 14.4 7.9 63 39-102 99-162 (325)
479 PRK03669 mannosyl-3-phosphogly 21.8 69 0.0017 14.4 4.8 19 9-27 152-170 (271)
480 COG0134 TrpC Indole-3-glycerol 21.8 69 0.0018 14.4 10.9 100 15-117 145-252 (254)
481 TIGR03128 RuMP_HxlA 3-hexulose 21.7 69 0.0018 14.3 9.0 27 34-60 38-65 (206)
482 cd03466 Nitrogenase_NifN_2 Nit 21.7 69 0.0018 14.3 11.3 86 2-98 300-392 (429)
483 COG0300 DltE Short-chain dehyd 21.6 69 0.0018 14.3 10.2 80 1-80 5-90 (265)
484 PRK05786 fabG 3-ketoacyl-(acyl 21.6 69 0.0018 14.3 8.5 79 2-82 5-89 (238)
485 COG0352 ThiE Thiamine monophos 21.5 70 0.0018 14.3 8.2 67 31-100 110-183 (211)
486 PRK05650 short chain dehydroge 21.4 70 0.0018 14.3 9.3 36 4-39 2-37 (270)
487 PRK11199 tyrA bifunctional cho 21.3 70 0.0018 14.3 7.2 32 3-34 99-130 (374)
488 PTZ00089 transketolase; Provis 21.3 70 0.0018 14.3 5.0 54 3-56 179-250 (670)
489 cd02007 TPP_DXS Thiamine pyrop 21.3 70 0.0018 14.3 2.8 21 49-69 102-122 (195)
490 cd00885 cinA Competence-damage 21.2 71 0.0018 14.3 3.0 49 11-60 17-73 (170)
491 COG1609 PurR Transcriptional r 21.2 71 0.0018 14.3 8.4 42 13-54 75-122 (333)
492 TIGR01302 IMP_dehydrog inosine 21.1 71 0.0018 14.3 6.1 60 39-100 244-305 (476)
493 TIGR01526 nadR_NMN_Atrans nico 21.0 71 0.0018 14.3 4.2 77 2-82 248-339 (346)
494 PRK13055 putative lipid kinase 21.0 71 0.0018 14.3 7.6 68 1-72 1-83 (334)
495 PRK13608 diacylglycerol glucos 20.8 72 0.0018 14.2 5.8 57 57-119 279-337 (391)
496 cd03805 GT1_ALG2_like This fam 20.8 72 0.0018 14.2 5.2 44 72-120 321-364 (392)
497 cd01744 GATase1_CPSase Small c 20.6 73 0.0019 14.2 4.8 76 5-84 1-80 (178)
498 cd04878 ACT_AHAS N-terminal AC 20.6 73 0.0019 14.2 2.3 67 5-79 4-70 (72)
499 PRK06096 molybdenum transport 20.4 74 0.0019 14.2 12.0 98 2-102 157-263 (284)
500 cd01537 PBP1_Repressors_Sugar_ 20.3 74 0.0019 14.2 9.6 70 12-85 15-90 (264)
No 1
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=100.00 E-value=1.7e-34 Score=227.71 Aligned_cols=121 Identities=28% Similarity=0.462 Sum_probs=117.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985--8998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
|+.+||||||+++++++++-.|++.||+|.+|.||++|..++.+..||+||+||++|+.+|+|||+++|.. ..++|||
T Consensus 1 m~~~iLvVEDE~AirEl~~~~L~~~gy~v~~A~d~~~A~~~~~E~~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPII 80 (226)
T TIGR02154 1 MTRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERLPDLILLDWMLPGTSGIELARRLRREPETRAIPII 80 (226)
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 98725677082689999999841689469980797999999860799889961478997569999873476331488817
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 9943797899999997699869976979899999999996036
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|+||.++.....++++.||+||++||||+.+|+.+|+.+|.+.
T Consensus 81 MLTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~ 123 (226)
T TIGR02154 81 MLTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCC
T ss_conf 7405556000113113688750367886588999999998316
No 2
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.97 E-value=4.3e-31 Score=207.32 Aligned_cols=120 Identities=27% Similarity=0.460 Sum_probs=117.2
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|+| ||||||||+.+|..++..|+..||+|.+|.||.+|++.+.++.||+||+|+.||++||+++++++|+.+|++|||+
T Consensus 1 M~k~kILiVDDd~~~r~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~dlvl~Di~mP~~~Gl~ll~~lr~~~~~~pvIv 80 (469)
T PRK10923 1 MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (469)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99997999949899999999999877998999899999999986699999987899999899999999984298997899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+||+++.+...+|++.|+.+||.|||++++|..+|+++|+.
T Consensus 81 iT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~~ 121 (469)
T PRK10923 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred EECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999989999998557044300889999999999999999
No 3
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.97 E-value=1.6e-30 Score=203.97 Aligned_cols=120 Identities=25% Similarity=0.373 Sum_probs=114.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985--8998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
|+.|||||||++.+|..+...|+..||+|..|.||++|++++.+++||+|++|+.||+|||+|+|+++|+. ..++|||
T Consensus 1 M~~rILiVdD~~~~~~~l~~~L~~~~y~v~~a~~G~eAL~~~~~~~PDLILlDi~MP~mdG~ev~r~Lk~~~~~~~iPVI 80 (457)
T PRK09581 1 MTARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIEICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATAHIPVV 80 (457)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf 99719999498999999999998789999998999999999971899989992877999999999999659888998499
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 994379789999999769986997697989999999999603
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++||+++.+...++.+.|+.+||.|||+...|..+++.+++.
T Consensus 81 vlTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l~r~ 122 (457)
T PRK09581 81 MVTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSLTRL 122 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 997899999999998648878998999989999999999988
No 4
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.97 E-value=3.6e-30 Score=201.75 Aligned_cols=118 Identities=31% Similarity=0.484 Sum_probs=115.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+||||||||+.+|..++..|+..||+|.+|.||.+|++++.+++||+|++|+.||++||+++++++|+..|++|||++||
T Consensus 5 ~rILIVDDd~~ir~~l~~~L~~~G~~V~~a~~~~~Al~~l~~~~~DlvllDi~mP~~~Glell~~ir~~~p~~pvIvlTa 84 (457)
T PRK11361 5 NRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTA 84 (457)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 92899839999999999999977998999899999999986689899998287999999999999982098993899968
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+++.+...++++.|+.+||.|||++++|...|+++++.
T Consensus 85 ~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~~ 122 (457)
T PRK11361 85 YAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL 122 (457)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99989999999759663256999999999999999999
No 5
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.97 E-value=5.8e-30 Score=200.53 Aligned_cols=120 Identities=22% Similarity=0.371 Sum_probs=116.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEE
Q ss_conf 986699975998999999999998898999999979999999718998999983655999799999999858--998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii 78 (122)
|++|||+||||+..+..++..|+..||+|..|.||++|++.+.+..||+||+|+.||++||+++++++|+.. +++|||
T Consensus 1 M~~kILiVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~l~~~~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~PII 80 (229)
T PRK10161 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCEE
T ss_conf 99719999599999999999999779999998999999999852899899997899887633587887750246897589
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 994379789999999769986997697989999999999603
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++|+.++.+....+.+.|+++|++|||++.+|+.+|+.+|++
T Consensus 81 ~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 995566657799998769876520899989999999999712
No 6
>PRK10693 response regulator of RpoS; Provisional
Probab=99.97 E-value=1.2e-29 Score=198.74 Aligned_cols=118 Identities=24% Similarity=0.309 Sum_probs=112.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.+||||||||+.+|..++.+|+..||+|..|.||++|++.+.+..||+||+|+.||+|||+++++++|+..+++|||++|
T Consensus 7 gkkILIVDDd~~~r~~l~~~L~~~G~~V~~A~nG~eAl~~l~~~~pDLIi~Dl~MP~mdGlell~~lr~~~~~~PVIvlT 86 (337)
T PRK10693 7 GKQILIVEDEPVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKFVEHLRNRGDQTPVLVIS 86 (337)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99899994999999999999997899999989999999998658999999968999999899999999858996499998
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHH
Q ss_conf 379789999999769986997697-98999999999960
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT 119 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~-~~~~L~~~i~~~l~ 119 (122)
++++.+...++++.|+++||+||+ +.++|.+++...+.
T Consensus 87 a~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l~ 125 (337)
T PRK10693 87 ATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACLY 125 (337)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 689999999999749958997896999999999998751
No 7
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.97 E-value=1.3e-29 Score=198.34 Aligned_cols=117 Identities=30% Similarity=0.493 Sum_probs=114.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
+|||||||+.+|..++..|+..||+|.+|.||.+|++++.++.||+|++|+.||++||+++++++++.+|++|||++||+
T Consensus 7 ~ILIVDDd~~~~~~l~~~L~~~G~~v~~a~~~~~al~~l~~~~~DlvllD~~mp~~~Gl~lL~~l~~~~p~~pvIviT~~ 86 (441)
T PRK10365 7 DILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAY 86 (441)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 59998398999999999999779989998999999999864899999988999999899999999842989828999699
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9789999999769986997697989999999999603
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+...+|++.|+.+||.|||+.++|...|.+++..
T Consensus 87 ~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~ 123 (441)
T PRK10365 87 SSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred CCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9989999999828512340788899999999999999
No 8
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.97 E-value=2.5e-29 Score=196.77 Aligned_cols=120 Identities=30% Similarity=0.492 Sum_probs=116.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++ |||+||||+..++.+...|+..||+|..+.||++|++.+.++.||+||+|++||++||++++++||+..+++|||+
T Consensus 1 M~~~kILiVEDd~~l~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvilDi~LP~~~G~~l~~~iR~~~~~~pII~ 80 (229)
T PRK11083 1 MQQPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLRAFHPALPVIF 80 (229)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999969999999999999988999999899999999997189989997388999876889999997089972999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|+.++......+.+.|+++|+.|||++++|..+|+.++++
T Consensus 81 lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR 121 (229)
T PRK11083 81 LTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRR 121 (229)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 83678989999999759987730874289999999999976
No 9
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.97 E-value=4.3e-29 Score=195.32 Aligned_cols=117 Identities=28% Similarity=0.417 Sum_probs=112.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.+|||||||+.++.+++.+|+..||+|.+|.||.||++.++++.||+|+||++||.|||+|++++||+....+|||.+||
T Consensus 825 lrILVVEDNpINq~VL~~~L~~LG~~V~~A~NG~EALe~l~~~~fDLILMDIqMPvMDGyEaTr~IRe~~~~iPIIALTA 904 (947)
T PRK10841 825 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTA 904 (947)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 88999907899999999999976999999899999999975699898997088899809999999980898494999938
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 7978999999976998699769798999999999960
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+...+..++|.+.|.++||+||++.+.|.+++.+.-.
T Consensus 905 nA~~edkerCleAGMDdyLsKPV~l~~L~~vL~~Y~~ 941 (947)
T PRK10841 905 NALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAE 941 (947)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9998999999987999999798979999999999987
No 10
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.97 E-value=4.7e-29 Score=195.11 Aligned_cols=119 Identities=24% Similarity=0.405 Sum_probs=115.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.||||||||+..++.++..|+..||.|..|.||++|++.+.++.||+||+|+.||++||+++++++|+..+.+|||++|+
T Consensus 6 ~kILiVEDd~~~~~~l~~~L~~~g~~v~~a~~~~~a~~~~~~~~~DlvilDi~lp~~dG~~l~~~iR~~~~~~pII~LTa 85 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTA 85 (239)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEC
T ss_conf 78999909999999999999988999999899999999997589989998789988887346777875057877899946
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.++......+.+.|+++||+|||++.+|+.+|+.+|+++
T Consensus 86 ~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR~ 124 (239)
T PRK09468 86 KGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 678789999997698688558999899999999998632
No 11
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.97 E-value=5.8e-29 Score=194.53 Aligned_cols=117 Identities=22% Similarity=0.346 Sum_probs=111.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985--899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~~ 80 (122)
-|||+||||+.++.++..+|++.|++|..|.||.+|++.+++++||+|+||++||.|||+|.+++||+. ..++|||.+
T Consensus 669 lrVLvVEDN~iN~~vi~~lL~~lG~~v~~A~nG~eAle~~~~~~fDLILMDiqMP~MDG~eATr~IR~~~~~~~~PIIAl 748 (920)
T PRK11107 669 LTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVELAKQRPFDLIFMDIQMPGMDGIRACELIRQLPHNQNTPIIAV 748 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 74999848899999999999984988999899999999974799978998899999989999999981867898959999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 437978999999976998699769798999999999960
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
|++...+...++.+.|.++||+||++.+.|...+.+.+.
T Consensus 749 TA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~~ 787 (920)
T PRK11107 749 TAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWKP 787 (920)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 799898999999977999387287999999999998678
No 12
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.96 E-value=1.3e-28 Score=192.45 Aligned_cols=118 Identities=25% Similarity=0.420 Sum_probs=112.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEEE
Q ss_conf 699975998999999999998898-999999979999999718998999983655999799999999858--99859999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMFI 80 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~-~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~~ 80 (122)
||||||||+.+|+.+..+|+..|| .|..|+||.+|++.+++..||+|++|+.||++||+++++++|+.. +++|||++
T Consensus 7 rILivDD~~~~r~~l~~~L~~~g~~~v~~a~~g~~al~~~~~~~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~~Pii~~ 86 (129)
T PRK10610 7 KFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGFGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMV 86 (129)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 99999798999999999999869978999899999999998589999998189999989999999985777789968999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||.++.+...++.+.|+++|+.|||++++|.+++++++++.
T Consensus 87 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~r~ 127 (129)
T PRK10610 87 TAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 127 (129)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 88689999999998699889989899999999999999763
No 13
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.96 E-value=6.2e-29 Score=194.36 Aligned_cols=118 Identities=24% Similarity=0.482 Sum_probs=114.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..++.++..|+..||+|..|.||.+|++.+.++.||+|++|++||++||+++|+++|+..+.+|||++|+.
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlvilDi~lP~~~G~~l~~~iR~~~~~~PII~Lta~ 81 (226)
T PRK09836 2 KLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTAL 81 (226)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEEECC
T ss_conf 89999399999999999998789999998999999999851899999988999999872043567761679609999445
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++.+....+.+.|+++|+.|||++.+|..+|+.++++.
T Consensus 82 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr~ 119 (226)
T PRK09836 82 GTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 (226)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 89889999997699688636876799999999996626
No 14
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.96 E-value=6.1e-29 Score=194.43 Aligned_cols=118 Identities=25% Similarity=0.369 Sum_probs=114.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..++.++..|+..||+|..|.||.+|++.+.+++||++|+|++||++||+++++++|+..+.+|||++|++
T Consensus 2 kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~a~~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~~~~~PII~lta~ 81 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTAR 81 (219)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCEEEEECC
T ss_conf 89999389999999999999879999998999999999862896999997999999856310104652788878998068
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++.+...++.+.|+++|+.|||++.+|..+|+.++++.
T Consensus 82 ~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr~ 119 (219)
T PRK10336 82 DALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 99999999997699888688976799999999996115
No 15
>PRK13557 histidine kinase; Provisional
Probab=99.96 E-value=1.3e-28 Score=192.46 Aligned_cols=121 Identities=27% Similarity=0.514 Sum_probs=113.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 86699975998999999999998898999999979999999718-998999983655-9997999999998589985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP-EMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~ 79 (122)
+++|||||||+.+|.+++.+|+.+||+|..|.||.+|++.+.++ +||+||+|+.|| +|||+++++++|+..|++|||+
T Consensus 413 ~~~ILvVDD~~~~r~~~~~~L~~~G~~v~~a~~G~eAl~~l~~~~~~Dlvl~D~~MPg~mdG~el~r~ir~~~p~i~ii~ 492 (538)
T PRK13557 413 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILESHPEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVLL 492 (538)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 72589967989999999999997699999989999999999609998899887779999889999999985389983999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 9437978999999976998699769798999999999960369
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
+|||........+...|..+||.|||+.++|..+|+++|.-.|
T Consensus 493 ~Tg~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~L~~~~ 535 (538)
T PRK13557 493 TTGYAEASIERTDVGGSEFDIVNKPYRRAELARRVRMVLDGPT 535 (538)
T ss_pred EECCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCCC
T ss_conf 9799877889977528998888198999999999999867898
No 16
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.96 E-value=7.7e-29 Score=193.82 Aligned_cols=111 Identities=32% Similarity=0.520 Sum_probs=108.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99975998999999999998898999999979999999718998999983655999799999999858998599994379
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~ 84 (122)
|||||||+.+|..++..|+.+||+|.+|.||++|++.+++++||+|++|++||++||++++++||+..+++|||++||++
T Consensus 1 ILvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~Di~mP~~dG~el~~~ir~~~~~~piI~~T~~~ 80 (111)
T pfam00072 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLELLRRIRRRPPTTPVIVLTAHG 80 (111)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 09998989999999999998899999989999999999847998999953689950157999997359998099997508
Q ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 7899999997699869976979899999999
Q gi|254780312|r 85 AVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 85 ~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
+.+...++.+.|+++|+.|||++++|..+|+
T Consensus 81 ~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 81 DEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 9999999997798779949999899998529
No 17
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.96 E-value=6e-29 Score=194.43 Aligned_cols=119 Identities=24% Similarity=0.466 Sum_probs=114.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+++|||+||||+..++.++..|+..||.|..|.||.+|++.+.++.||+||+|++||++||+++|++||+. .++|||++
T Consensus 5 ~k~kILiVEDd~~l~~~l~~~L~~~G~~v~~a~~g~~a~~~~~~~~~DlviLDi~LP~~dG~~l~~~iR~~-~~~PII~L 83 (240)
T CHL00148 5 SKEKILVVDDEASIRRILETRLSIIGYEVITASDGEEALKLFHQEQPDLVILDVMMPKLDGYGVCQEIRKE-SDVPIIML 83 (240)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCCCC-CCCCEEEE
T ss_conf 99829999398999999999999789999998999999999974799999997999988866305414037-99548998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|+.++......+.+.|+++||+|||++++|..+|+.++++
T Consensus 84 Ta~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr 123 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 1678989999999769978952784479999999999866
No 18
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.96 E-value=2.8e-28 Score=190.43 Aligned_cols=117 Identities=31% Similarity=0.429 Sum_probs=112.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
-+|||||||+.+|.++..+|+..||+|..|.||.+|++.++++.||+||||++||+|||+|++++||+..+.+|||.+|+
T Consensus 959 l~ILvVeDn~~Nr~ll~~~L~~lG~~v~~a~nG~eAl~~~~~~~fDlILmDi~MP~MDG~e~tr~IR~~~~~~PIialTA 1038 (1197)
T PRK09959 959 LSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSSLPIWGLTA 1038 (1197)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 87999799899999999999983999999899999999976699999998797899989999999964698694899979
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 7978999999976998699769798999999999960
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+...+...++.+.|.++||.||++.+.|...+.+...
T Consensus 1039 ~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~~~ 1075 (1197)
T PRK09959 1039 NAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 9999999999976998345188989999999985311
No 19
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.96 E-value=1.4e-28 Score=192.28 Aligned_cols=119 Identities=27% Similarity=0.392 Sum_probs=114.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|++|||+||||+..++.++..|+..||+|..|.||++|++.+.++.||++++|+.||++||+++++++|+. +++|+|++
T Consensus 1 M~~kILlVEDD~~l~~~l~~~L~~~g~~V~~~~~~~~a~~~l~~~~~DlvilDi~lp~~~G~el~~~iR~~-~~~piI~l 79 (224)
T PRK10766 1 MSYHILVVEDEPVTRARLQGYFEQEGYRVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSR-STVGIILV 79 (224)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHC-CCCCEEEE
T ss_conf 99719999199999999999999879999998999999999960899999988999988766137676304-78556863
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++......+...|+++|+.|||+.++|..+|+.+|++
T Consensus 80 ta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR 119 (224)
T PRK10766 80 TGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWR 119 (224)
T ss_pred CCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 3558989999999849414513999889999999999725
No 20
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=4.8e-28 Score=189.02 Aligned_cols=121 Identities=39% Similarity=0.642 Sum_probs=117.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
|..+|||||||+.+|..+...|+..||.|..+.|+.+|++++.+..||+|++|+.||++||+++++++++.+|++|||++
T Consensus 3 ~~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 76878999297899999999999769748985899999999862899989981678999669999999963899988998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|||++.+.+.+|++.|+.+|+.|||++++|...++++++.+
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 28899999999985570333218999999999999999876
No 21
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.96 E-value=4.4e-28 Score=189.27 Aligned_cols=113 Identities=35% Similarity=0.589 Sum_probs=110.5
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 99759989999999999988989999999799999997189989999836559997999999998589985999943797
Q gi|254780312|r 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 (122)
Q Consensus 6 LiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~ 85 (122)
|||||++.+|..++..|+.+||+|.+|.||.+|++.+++++||+|++|++||++||++++++||+..+++|||++||+++
T Consensus 1 LvVDD~~~~~~~l~~~L~~~g~~v~~a~~g~~al~~~~~~~~dlvi~D~~mP~~~G~el~~~ir~~~~~~pvI~lT~~~~ 80 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAHGD 80 (113)
T ss_pred CEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 98927299999999999988999999899999999987579999997799989872699999998589995999978789
Q ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 899999997699869976979899999999996
Q gi|254780312|r 86 VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 86 ~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
.+...++.+.|+.+|+.|||++++|..+|+++|
T Consensus 81 ~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~l 113 (113)
T cd00156 81 DEDAVEALKAGADDYLTKPFSPEELLARIRALL 113 (113)
T ss_pred HHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
T ss_conf 999999997689789969899999999999869
No 22
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.96 E-value=7.4e-28 Score=187.92 Aligned_cols=117 Identities=24% Similarity=0.418 Sum_probs=112.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..++.++..|+..||+|..|.||.+|++.+.++.||+|++|+.||++||+++++++|+. +++|||++|+.
T Consensus 2 kILiVEDd~~l~~~l~~~L~~~g~~V~~a~~g~~al~~~~~~~~DlvilDi~lP~~dG~~l~~~iR~~-~~~pII~lta~ 80 (223)
T PRK11517 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQILQTLRTA-KQTPVICLTAR 80 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CCCCEEEEECC
T ss_conf 89999698999999999999889999998999999999852899999984999873689999999856-88648999565
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++......+.+.|+++|+.|||++.+|..+|+.++++.
T Consensus 81 ~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr~ 118 (223)
T PRK11517 81 DSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQH 118 (223)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
T ss_conf 56578999998398776208977899999999996414
No 23
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.96 E-value=1e-27 Score=187.09 Aligned_cols=119 Identities=25% Similarity=0.402 Sum_probs=113.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971-8998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.||||||||+.++.++..+|+..||+|.+|.||.+|++.+.+ ++||+|+||++||+|||+|++++||+..|.+|||.+|
T Consensus 682 lrVLvVEDn~~N~~v~~~~L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~~~~~pIIAlT 761 (912)
T PRK11466 682 LRLLLIEDNPLTQRITVEMLNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQYPSLVLIGFS 761 (912)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEC
T ss_conf 86999948788999999999986998999899999999997189985898769999998999999998619999789977
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++...+...++...|.++|+.||++++.|...+.+.+..+
T Consensus 762 A~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l~~~ 801 (912)
T PRK11466 762 AHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (912)
T ss_pred CCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHHCCC
T ss_conf 9878899999997699877549899999999999984667
No 24
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.96 E-value=9.6e-30 Score=199.21 Aligned_cols=117 Identities=26% Similarity=0.462 Sum_probs=114.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99975998999999999998898999999979999999718998999983655999799999999858998599994379
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~ 84 (122)
|||||||+-..+.+++-|++.||.|++|+||.++|.++.++.||+||+|+++|+|||+++++++|+...+.||+++||.+
T Consensus 1 iLvvEDeqkT~~YlqqGLsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~~~~~PVl~LTA~D 80 (219)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRSGKETPVLFLTARD 80 (219)
T ss_pred CEEEECCCCHHHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 96763086026765305201234798877686247543688830899632588950689999984078987348883378
Q ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 7899999997699869976979899999999996036
Q gi|254780312|r 85 AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 85 ~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+-....++.+.||++||.|||+..||+.+|+++|+..
T Consensus 81 ~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~ 117 (219)
T TIGR01387 81 SVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRS 117 (219)
T ss_pred CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8454353011478654137877603799999876775
No 25
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.96 E-value=1.4e-27 Score=186.34 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=112.6
Q ss_pred CCC--EEEEECCCHHHHHHHHHHHHH-CCCE-EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 986--699975998999999999998-8989-999999799999997189989999836559997999999998589985
Q gi|254780312|r 1 MNQ--KILLAEDDDDMRRFLIKALGK-AGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 1 M~~--rILiVDD~~~~r~~l~~~L~~-~G~~-v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
|+. ||||||||+.+++.++.+|+. .||. |..|.||.+|++.++++.||+||+|+.||++||+++++++|+..++++
T Consensus 1 M~~~i~VLIVEDd~~v~~~l~~~L~~~~gf~~V~~A~~~~eA~~~l~~~~pDLvLLDi~LPd~~Glell~~lr~~~~~~~ 80 (225)
T PRK10046 1 MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGD 80 (225)
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 99988699995989999999999972899549999899999999997359999998289899979999999996487998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 99994379789999999769986997697989999999999603
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
||++|++++.+...+|++.|+.+||.|||+.++|.+++.+.-+.
T Consensus 81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~~ 124 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 (225)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHH
T ss_conf 89996899999999999749983102899999999999999999
No 26
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.96 E-value=1.7e-27 Score=185.73 Aligned_cols=117 Identities=24% Similarity=0.277 Sum_probs=108.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC---CCCEEE
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589---985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP---DLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~---~~pii~ 79 (122)
.|||+||||+.++.++..+|+..||+|++|.||.+|++.+++++||+|+||++||+|||+|++++||+... .+|||.
T Consensus 526 lrILvVEDn~iN~~V~~~~L~~lG~~v~~A~nG~eALe~~~~~~fDLILMDiqMP~MDG~Eatr~IR~~~~~~~~~PIIA 605 (779)
T PRK11091 526 LNILLVEDIELNVIVARSLLEKLGNSVDVAMTGKDALEMFKPGEYDLVLLDIQLPDMTGLDVARELRERYGREDLPPLVA 605 (779)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 81899868899999999999975999999899999999850699998998289999978999999984257689992798
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|++... ...++.+.|.++||+||++.+.|.+.+.+.+..
T Consensus 606 LTAna~~-d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 606 LTANVLK-DKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EECCCCH-HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 8187417-699999769984751889899999999998464
No 27
>PRK11173 two-component response regulator; Provisional
Probab=99.96 E-value=1.9e-27 Score=185.44 Aligned_cols=119 Identities=28% Similarity=0.417 Sum_probs=113.7
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986-6999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++ |||+||||+..|+.++..|+..||.|..|.||.+|++.+.++.||+||+|++||++||+++++++|+. .++|+|+
T Consensus 1 m~~~~ILiVEDD~~~~~~l~~~L~~~G~~V~~a~~~~ea~~~l~~~~~DlvilDi~lp~~~G~~l~~~iR~~-~~~piI~ 79 (237)
T PRK11173 1 MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQ-ANVALMF 79 (237)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHC-CCCCEEE
T ss_conf 999989999598999999999999889999998999999999863899899993899988730355566516-8847899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|++.+......+...|+++||.|||++.+|..+++.++.+
T Consensus 80 lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r 120 (237)
T PRK11173 80 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 94325778899999769767887898879999999999866
No 28
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.96 E-value=3.9e-28 Score=189.60 Aligned_cols=117 Identities=32% Similarity=0.478 Sum_probs=114.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 99975998999999999998898999999979999999718-99899998365599979999999985899859999437
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|+|||||.++|-++.+.|+..||+|..+.|+..+|.++..+ .||+||+|+.||++||++|+.+||+..|++|||+||+|
T Consensus 1 vwvvDDD~siR~VL~~AL~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~~P~LPVIvM~A~ 80 (471)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKRHPKLPVIVMTAH 80 (471)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 95776471899999999966695453113189999998447999879861226882489999999850899977987130
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
++-..+..+.+.|+..||.|||+.++++.-+.|++...
T Consensus 81 ~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~ 118 (471)
T TIGR01818 81 SDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 118 (471)
T ss_pred HHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 67899999973583021769876688999999861030
No 29
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.95 E-value=7.5e-28 Score=187.88 Aligned_cols=117 Identities=19% Similarity=0.220 Sum_probs=111.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+|||+||||+..++.++..|+..||+|..|.||.+|++.+.++.||+||+|++||++||+++|++||+. .++|||++|+
T Consensus 2 ~kILlVEDd~~l~~~l~~~L~~~g~~v~~a~~g~~a~~~~~~~~~DlvilDi~LP~~dG~~l~~~iR~~-~~~PiI~lta 80 (240)
T PRK10701 2 NTIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEETILREQPDLVLLDIMLPGKDGMTICRDLRPK-WSGPIVLLTS 80 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCCC-CCCCEEEEEE
T ss_conf 989999799999999999998879999998999999999861799999992899767887876311025-8987899940
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
.++......+.+.|+++||+|||++.+|+.+|+.++++
T Consensus 81 ~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (240)
T PRK10701 81 LDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 57578899999768877641799879999999999965
No 30
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.95 E-value=1e-27 Score=187.03 Aligned_cols=118 Identities=23% Similarity=0.355 Sum_probs=113.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.|||+||||+..++.++..|+..||+|..|.||++|+..+.++.||++|+|+.||++||+++++++|+. ..+|||++|+
T Consensus 2 ~~ILivEDd~~l~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~DlviLDi~lP~~dG~~l~~~iR~~-~~~pII~lta 80 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQW-SAIPVIVLSA 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEECC-CCCCEEEEEC
T ss_conf 989999798999999999999889999997999999998611799899980788888876331000127-9987899954
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.++.+....+.+.|+++||.|||++.+|..+|+.+|++.
T Consensus 81 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr~ 119 (225)
T PRK10529 81 RSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 689899999997698765407854599999999997140
No 31
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.95 E-value=1.3e-27 Score=186.38 Aligned_cols=117 Identities=26% Similarity=0.448 Sum_probs=110.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+|||+||||+..++.++..|+..||+|..|.||++|++.+. +.||+||+|+.||++||+++++++|+ .+++|||++|+
T Consensus 2 ~kILlVEDd~~l~~~l~~~L~~~G~~V~~a~~g~~al~~l~-~~~DlvilDi~LP~~dG~~l~~~iR~-~~~~PII~lta 79 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLD-DSIDLLLLDVMMPKKNGIDTLKALRQ-THQTPVIMLTA 79 (232)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCEEEC-CCCCCEEEEEC
T ss_conf 88999969899999999999888999999899999999964-89899999189998886723012440-78887899805
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 797899999997699869976979899999999996036
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.++......+.+.|+++||.|||++.+|..+|+.+|++.
T Consensus 80 ~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR~ 118 (232)
T PRK10955 80 RGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 567688999997697576338999899999999997615
No 32
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.95 E-value=6.6e-27 Score=182.21 Aligned_cols=117 Identities=26% Similarity=0.355 Sum_probs=114.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..++.++..|+..||.|..|.+|++|++.+.++.||++++|+.||++||+++++++|+..+.+|||++|++
T Consensus 2 kILlVEDd~~~~~~l~~~L~~~g~~V~~a~~~~ea~~~~~~~~~DlvilDi~lp~~~G~~l~~~ir~~~~~~pII~lt~~ 81 (222)
T PRK10643 2 KILIVEDDTLLLQGLILAAQTEGYACDGVSTAREAEQSLESGHYSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTAR 81 (222)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEECC
T ss_conf 79999288999999999999789999998999999999974899899996888998622689999834899889998210
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9789999999769986997697989999999999603
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+....+.+.|+++||.|||+..+|..+++.++++
T Consensus 82 ~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr 118 (222)
T PRK10643 82 DTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR 118 (222)
T ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 3678899999759977643887689999999999703
No 33
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.95 E-value=5e-27 Score=182.97 Aligned_cols=120 Identities=29% Similarity=0.445 Sum_probs=115.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98669997599899999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+||||||++.+|+.++..|+..||.|..+.+|+++++.+.+.+||++++|++||++||+++++++++..|++|||++
T Consensus 2 ~k~tIliVDDh~~vr~gl~~lL~~~~~~v~~~~~~~~~l~~~~~~~pdlvllDi~mP~~~G~e~l~~l~~~~p~~~vivl 81 (202)
T PRK09390 2 TKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGLRFGCVVTDVRMPGIDGIELLRRLKARGSPLPVIVM 81 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEE
T ss_conf 99979998499999999999999889989998999999999765797999877999998960799998722899867999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++++.....++++.|+.+|+.||++.++|..+|++++..
T Consensus 82 T~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~~ 121 (202)
T PRK09390 82 TGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 7457488889999829464455999999999999999971
No 34
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.95 E-value=6.2e-27 Score=182.38 Aligned_cols=118 Identities=22% Similarity=0.364 Sum_probs=114.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|||+||||+..+..+...|+..||+|..|.+|++|++.+.++.||++++|+.||++||++++++||+..+++|||++|++
T Consensus 2 kILivEdd~~~~~~l~~~L~~~g~~V~~a~~~~~al~~~~~~~~dlvilD~~lp~~~G~~l~~~ir~~~~~~piI~lta~ 81 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (223)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCEEEEECC
T ss_conf 89999598999999999999789999998999999999975799899997999898864001201104898768999444
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 97899999997699869976979899999999996036
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.+.+...++...|+++|+.|||+.++|..+|+.++++.
T Consensus 82 ~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr~ 119 (223)
T PRK10816 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCCC
T ss_conf 56778999998699886418977789999999996655
No 35
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.95 E-value=1.6e-26 Score=179.93 Aligned_cols=117 Identities=25% Similarity=0.426 Sum_probs=112.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.|||+||||+..++.++..|+..||.|..|.+|++|++.+.++.||++|+|+.||++||+++++++|+. +++|||++|+
T Consensus 11 ~kILlVEDd~~l~~~l~~~L~~~g~~V~~a~~~~eal~~~~~~~~DliilDi~lp~~~Gl~l~~~lr~~-~~~piI~lta 89 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLRAASYAPTLISHGDEVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRF-SDIPIVMVTA 89 (240)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHCC-CCCCEEEECC
T ss_conf 879999298999999999999889999998999999999973799899987999888776321122115-7646899816
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 79789999999769986997697989999999999603
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+.+......+.+.|+++|+.|||+.++|+.+|+.++++
T Consensus 90 ~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr 127 (240)
T PRK10710 90 KIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 78889999999869987600776538999999999845
No 36
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.95 E-value=3.1e-26 Score=178.23 Aligned_cols=118 Identities=30% Similarity=0.480 Sum_probs=112.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979999999985-8998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~s 81 (122)
.+||+||||+..+..++..|+..||+|..+.+|++|++.+.+. ||+|++|++||++||+++|+++|+. ...+|||++|
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~G~~v~~~~~~~~a~~~~~~~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lt 79 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQ-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLT 79 (229)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 9899991888999999999987597899978989999997269-999999889998568999999985168999889996
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 3797899999997699869976979899999999996036
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+.++......+.+.|+++|++|||++.+|..+|+.++++.
T Consensus 80 a~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 80 ARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred CCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 6872888999997563423348899899999999996736
No 37
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.94 E-value=2.8e-26 Score=178.44 Aligned_cols=117 Identities=26% Similarity=0.460 Sum_probs=111.0
Q ss_pred CEEEEECCCHHHHHHHHHHH--HHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 66999759989999999999--98898999-9999799999997189989999836559997999999998589985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L--~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
.+||||||++.+|+.++.++ +..||++. +|.||.+|++.+++.+||+||+|++||+|||+++++.+|+..|++.+|+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~II 81 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGMDGLDLIKAIKEQSPDTEFII 81 (475)
T ss_pred EEEEEECCHHHHHHHHHHHCCHHHCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 13999667299999999848856369757875145799999987349978998157888757999999997499853999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+||+++.+-+.+|++.|+.+||.||++.++|.+++.++.+
T Consensus 82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~ 121 (475)
T COG4753 82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIG 121 (475)
T ss_pred EECCCHHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHH
T ss_conf 8464205899999861852122076989999999999999
No 38
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.94 E-value=8.8e-26 Score=175.50 Aligned_cols=118 Identities=19% Similarity=0.372 Sum_probs=109.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+|||+||||+..++.++.+|+..||.|..|.+|.+|++.+.+..||++|+|++||++||+++++++|+. .++|+|++|+
T Consensus 2 ~~ILlVEDD~~l~~~l~~~L~~~g~~v~~a~~~~~~~~~l~~~~~DlvIlDi~lp~~~Gl~~~~~ir~~-~~~piiilt~ 80 (241)
T PRK13856 2 KHVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLSSETVDVVVVDLNLGREDGLEIVRSLATK-SDVPIIIISG 80 (241)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHCCC-CCCCEEEEEC
T ss_conf 989999698999999999998779999998999999999865999999996999876613455564036-9973699972
Q ss_pred -CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf -797899999997699869976979899999999996036
Q gi|254780312|r 83 -FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 83 -~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
..+......+.+.|+++||.|||++++|..+|+.+|.++
T Consensus 81 ~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lrr~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 6787899999987699889977767779999999998745
No 39
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.94 E-value=6.2e-26 Score=176.40 Aligned_cols=117 Identities=21% Similarity=0.300 Sum_probs=109.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHH--HHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 699975998999999999998-898999-999979999999--7189989999836559997999999998589985999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKV--REEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~--~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
||||||||+.+++.++.+|++ .||++. .|+++++|++++ .+.+||+||+|+.||++||+++++.||+..++++||+
T Consensus 3 rVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~VI~ 82 (239)
T PRK10430 3 NVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVIV 82 (239)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEEEE
T ss_conf 79999298999999999985189908999989999999999657999858997899999978999999998589981999
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|++++.+...+|++.|+.+||.|||+.++|.+++.+..+.
T Consensus 83 ITa~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y~~~ 123 (239)
T PRK10430 83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQK 123 (239)
T ss_pred EEECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHHHHH
T ss_conf 97268899999999839503048999999999999999999
No 40
>PRK13435 response regulator; Provisional
Probab=99.93 E-value=4.3e-25 Score=171.36 Aligned_cols=115 Identities=25% Similarity=0.358 Sum_probs=105.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999-999979999999718998999983655-99979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~ 80 (122)
=|||||||++.++..+...|+..||+|. .|.||++|++.+++..||++++|++|| +++|+++++++++ .+++|+|++
T Consensus 2 mRILIVEDe~~i~~~l~~~L~~~G~~vv~~A~~~~eAl~~~~~~~PDlvllDi~LpdG~~G~e~~r~l~~-~~~ipvI~l 80 (141)
T PRK13435 2 LRVLIVEDEALIALELEKLLEEAGHQVVGIASTSEQALALGRRAQPDVALVDIRLADGPTGVEVARRLSI-DGGVEVIFM 80 (141)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 7899989989999999999998799799975999999999765999899978878999989999999987-599838999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||+.+. ..+...|+.+||.|||++++|..+++++++++
T Consensus 81 Ta~~d~---~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr 118 (141)
T PRK13435 81 TANPER---VGHDFAGALGVIAKPYSLRQVARALSYVAARR 118 (141)
T ss_pred ECCHHH---HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf 777998---60134599858989999899999999999715
No 41
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=99.93 E-value=3.2e-25 Score=172.16 Aligned_cols=117 Identities=25% Similarity=0.470 Sum_probs=110.3
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEE
Q ss_conf 6999759989999999999988-989999-99979999999718998999983655999799999999858--9985999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMF 79 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~ 79 (122)
||+|+|||.....+|+++|+.. .++|.. |.||.+|++.++++.||++++|+.||.+||+-+++++++.. ..++||+
T Consensus 4 ri~i~DDNkEFc~lL~eY~~~Q~D~EVvG~A~nG~~a~~~I~~q~PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P~vi~ 83 (270)
T TIGR02875 4 RIVIADDNKEFCNLLKEYLAAQEDMEVVGVAHNGVDALELIKEQKPDVVVLDIIMPHLDGIGVLEKLNEIELKARPRVIM 83 (270)
T ss_pred EEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 89998288899999999985289838997414768999999608998999515043000579999988988744895888
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 94379789999999769986997697989999999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+|+.+++....+|...|+++|+.|||+.+-|..+|+++.+-
T Consensus 84 LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 84 LSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred EECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 52237558999999728981566504178899999986246
No 42
>KOG0519 consensus
Probab=99.93 E-value=1.3e-24 Score=168.54 Aligned_cols=118 Identities=31% Similarity=0.452 Sum_probs=112.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEEE
Q ss_conf 866999759989999999999988989999999799999997-18998999983655999799999999858-9985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~-~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii~ 79 (122)
+.+||+||||..+|++.+.+|...|.++.++.||.+|++.+. .+.||+|+||++||.|||+|.+++||+.. ..+|||.
T Consensus 666 g~~iLlvddn~vn~~Va~~~l~~~g~~v~~~~sg~e~l~~~~~~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvA 745 (786)
T KOG0519 666 GPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVA 745 (786)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 67657855871019999989997396457428869999863899863279997577555549999999875167887799
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+||..+....+++.+.|.++||.|||..+.|...+.+.+.
T Consensus 746 lTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519 746 LTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred EECCCCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 7468757889999982876467463318999999999733
No 43
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.92 E-value=5.7e-24 Score=164.62 Aligned_cols=105 Identities=28% Similarity=0.486 Sum_probs=97.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9866999759989999999999988-98999-999979999999718998999983655999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|+-|||||||++.+|+.++.+|+.. ||+|. .|.||.+|++.+++..||+|++|++||+|||+|++++|++.+| +|||
T Consensus 1 MkirVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~nG~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~pVi 79 (345)
T PRK00742 1 MKIRVLVVDDSAFMRRLLSEILNSDPDIEVVGTARDGLEAVEKIKKLNPDVITLDVEMPVMDGIEALRKIMALRP-TPVV 79 (345)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEE
T ss_conf 982699992988999999999972899089999899999999988609999998378899987999999997589-8779
Q ss_pred EEECCCC--HHHHHHHHHCCCCEEEECCCC
Q ss_conf 9943797--899999997699869976979
Q gi|254780312|r 79 FITGFAA--VALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 79 ~~s~~~~--~~~~~~~~~~g~~~~l~KP~~ 106 (122)
++|+.+. .+...++++.|+.+|+.||-.
T Consensus 80 mvSs~~~~~~~~~~~Al~~GA~D~i~KP~~ 109 (345)
T PRK00742 80 MVSSLTERGAEITLEALELGAVDFVPKPFL 109 (345)
T ss_pred EEEECCCCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 997225556599999997592248957888
No 44
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-24 Score=167.94 Aligned_cols=119 Identities=28% Similarity=0.431 Sum_probs=114.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999999858998599994
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.--|.|||||..+|+.+...|+..||+|.+..|+.+.++......|.|+++|+.||+++|.++..++++....+|||++|
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT 83 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT 83 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf 87689976848899999999983895366504799998306678897699855788885089999999539998879982
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
||++..+..++++.|+.+||.|||+.+.|+++|.+++.+
T Consensus 84 GhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 84 GHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred CCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 788728999999742156774788548999999999998
No 45
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.90 E-value=2.1e-22 Score=155.22 Aligned_cols=113 Identities=19% Similarity=0.396 Sum_probs=98.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988-98999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||||||++.+|+.++++|+.. |++|. +|.||.+|++.+.+..||+|++|++||+|||++++++|++..| +|||++|
T Consensus 3 rVLIVDDs~~~R~~l~~~L~~~~~~eVv~~A~~g~eAl~~~~~~~pDvVllDi~MP~mdGie~l~~I~~~~p-~PVimvS 81 (340)
T PRK12555 3 NVGIVDDSALAREALRRIIARRPDHRVLGVATDGLQARDLCKAQPPDVVLLDLEMPRMDGLTFLRRIMRRRP-CPVLIVS 81 (340)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCEEEEE
T ss_conf 899990988999999999960999489999899999999988619999997278899987999999998789-9869985
Q ss_pred CCCCH--HHHHHHHHCCCCEEEECCCC---------HHHHHHHHHHH
Q ss_conf 37978--99999997699869976979---------89999999999
Q gi|254780312|r 82 GFAAV--ALNPDSNAPKNAKVLSKPFH---------LRDLVNEVNRL 117 (122)
Q Consensus 82 ~~~~~--~~~~~~~~~g~~~~l~KP~~---------~~~L~~~i~~~ 117 (122)
+.++. +...++++.|+.+|+.||-. .++|.++|+.+
T Consensus 82 s~~~~~~~~~~~AL~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~ 128 (340)
T PRK12555 82 SLTEAGASITYEALGAGALDAVDKPKLGIGRGLDAYAQELLAKIDQA 128 (340)
T ss_pred ECCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 03565769999999779776684788775531999999999999998
No 46
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=6e-23 Score=158.49 Aligned_cols=118 Identities=32% Similarity=0.528 Sum_probs=112.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC---CCCEEEE
Q ss_conf 6999759989999999999988989999999799999997189989999836559997999999998589---9859999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP---DLKVMFI 80 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~---~~pii~~ 80 (122)
+||+|||.+.++..++..|+..||.+..|.+|++|++...++++|++++|++||+|||+|+|.+|+...| .+|++++
T Consensus 16 ~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ip~i~l 95 (360)
T COG3437 16 TVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRRIPVILL 95 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 48896586668999999997426414641475077887511688567764257776599999998724976565325998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|++++.+...++...|+.+|+.|||++.+|..+++..+..|
T Consensus 96 T~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 96 TAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred EECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 60587699999997247777528898899999999999998
No 47
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=99.89 E-value=7.8e-23 Score=157.82 Aligned_cols=116 Identities=23% Similarity=0.311 Sum_probs=110.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCC--------
Q ss_conf 669997599899999999999889899999997999999971-89989999836559997999999998589--------
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDP-------- 73 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~-------- 73 (122)
++||+||||+.+..+...+|++.|++|..|.||.+|++.+.+ +.||++++|+++||.||..|.+++|+.++
T Consensus 762 y~vLlVEDN~vN~~VA~gfL~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~~~~~ 841 (1052)
T TIGR02956 762 YRVLLVEDNEVNQMVAQGFLERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKNDSQDE 841 (1052)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 01324644747799999998427944720854999999985488767545515788986567899999999732044456
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 985999943797899999997699869976979899999999996
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
.+|.|.+|+|--.+.-.+..+.|+++||.||+..++|...|+++|
T Consensus 842 p~k~iAvSAHVf~Edv~~y~~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 842 PVKFIAVSAHVFNEDVAQYLAAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 777222113344776999975302663479987788999999987
No 48
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.89 E-value=7.4e-22 Score=151.96 Aligned_cols=116 Identities=12% Similarity=0.187 Sum_probs=111.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 699975998999999999998898999-9999799999997189989999836559997999999998589985999943
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+||||||++.+|..++.+|+..+++|. .+.||.+|++.+.+.+||++++|+.||+++|++++++||+..|+.+++++|+
T Consensus 2 ~vlivDDh~lvr~gl~~ll~~~~~~vv~~~~~~~~~l~~~~~~~pDvvllDl~lp~~~G~~~~~~ir~~~~~~~viv~s~ 81 (204)
T PRK09958 2 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSA 81 (204)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEC
T ss_conf 89998698999999999998689989999799999999987439799999589999984167888987279805999972
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 7978999999976998699769798999999999960
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+.+.....++.+.|+.+|+.|+.+.++|..+|+.+.+
T Consensus 82 ~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~ 118 (204)
T PRK09958 82 KNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 4652114433526863799789999999999999977
No 49
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.89 E-value=5e-22 Score=153.01 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=110.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988-98999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||||||++.+|..++.+|+.. ++++. .|.+|.+|++.+.+.+||++++|+.||+++|+++++++++..|.+|+|++|
T Consensus 8 rVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~~~~~~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~iivlt 87 (216)
T PRK10651 8 TILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFS 87 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 89998399999999999997589938999989999999998707999999959999988876423233457887467630
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+.....++.+.|+++|+.||+++++|.++|+.++.-
T Consensus 88 ~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~g 126 (216)
T PRK10651 88 VSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 126 (216)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 554188999999669878983789999999999999859
No 50
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.89 E-value=1.1e-21 Score=150.87 Aligned_cols=117 Identities=23% Similarity=0.297 Sum_probs=109.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999999979999999718--99899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+||+||||+.+|.....+|+..||+|..+.||.+|++++.+. .||++++| .||.++|.++...++...|++||| +
T Consensus 700 e~ILvVdDe~~vr~~~~~~L~~lGY~v~~a~~~~~Al~~~~~~~~~~DLvltD-~~p~~~g~~~~~~l~~~~p~lpVi-l 777 (831)
T PRK13837 700 ETVLLVEPDDALLERYEEKLAALGYEPVGFSTLSAAIAWISKDGKRFDLVLVD-QPSLGDSQLAIAALHAAAPTLPII-L 777 (831)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEC-CCCCCCHHHHHHHHHHHCCCCEEE-E
T ss_conf 77999859889999999999967996888689999999998389985399988-999998799999998618997499-9
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
||++.......+...+...||.|||+.++|..+|+++|...
T Consensus 778 sg~~~~~~~~~~~~~~~~~fL~KPfs~~~LA~avR~aL~~~ 818 (831)
T PRK13837 778 AGSSLKMAAREALATAIAEILPKPISSRTLAYALRTALATA 818 (831)
T ss_pred ECCCCHHHHHCHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 76881443311022266706509999999999999998488
No 51
>PRK09483 response regulator; Provisional
Probab=99.88 E-value=2e-21 Score=149.41 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=111.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988-98999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
|||||||++.+|..++..|+.. |+++. .+.++.++++++++++||++++|+.||+++|+++++++++..|+++++++|
T Consensus 3 ~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~vivls 82 (216)
T PRK09483 3 NVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKIIMLT 82 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEC
T ss_conf 89998499999999999997489958999989999999999855999999868898987523778887408998578630
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+.....++.+.|+.+|+.|+.++++|..+|+.+.+-
T Consensus 83 ~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G 121 (216)
T PRK09483 83 VHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG 121 (216)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 566328899999748878994799999999999999859
No 52
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.88 E-value=2.3e-21 Score=149.01 Aligned_cols=119 Identities=29% Similarity=0.450 Sum_probs=113.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEEE
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799999999858--99859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~~ 80 (122)
.+||+|||+...+..+...|...||.+..+.+|++|+..+.+.+||+|++|+.||++|||++|+++|+.. ..+|+|++
T Consensus 133 ~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ipii~~ 212 (435)
T COG3706 133 KKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDGLELCTRLRQLERTRDIPIILL 212 (435)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 50899748077999999998753633665159899999974689858999557876678999999724444456638999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 43797899999997699869976979899999999996036
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
|+.++.+....+.+.|+.+|+.||+...+|..++.+.++.+
T Consensus 213 ~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~ 253 (435)
T COG3706 213 SSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRK 253 (435)
T ss_pred ECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHH
T ss_conf 52663478999997688516734778799999999999854
No 53
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.88 E-value=4.1e-21 Score=147.49 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=113.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 986-6999759989999999999988-98999-99997999999971899899998365599979999999985899859
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
|+. |||||||++.+|..++..|+.. ++++. .|+++.++++.+++.+||++++|+.||+++|+++++++++.+|++++
T Consensus 1 M~p~~VlIvDDh~l~r~gl~~~l~~~~~~~vv~~a~~~~~~~~~l~~~~~DvvllD~~lp~~~g~~~i~~i~~~~p~~~i 80 (210)
T PRK09935 1 MKPASVIIMDEHPIVRMSIEVLLQKNSNIQVVLKTDDSRITIDYLRTYPVDLVILDIELPGTDGFTLLKRIKQIQETVKV 80 (210)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCE
T ss_conf 99788999859699999999999629892899998999999999974799999988999998864056789873899708
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 9994379789999999769986997697989999999999603
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+++|++.+.....++.+.|+.+|+.|+.+.++|..+|+.+++-
T Consensus 81 lvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~G 123 (210)
T PRK09935 81 LFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILSG 123 (210)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9971767299999999668776886789999999999999859
No 54
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.88 E-value=2.2e-21 Score=149.19 Aligned_cols=118 Identities=21% Similarity=0.198 Sum_probs=111.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998-898999-99997999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
-|||||||++.+|..++..|+. .+|++. .+.|+.++++.+++.+||++|+|+.||+++|+++++++++..|.++++++
T Consensus 7 irIlIvDD~~l~r~gl~~~L~~~~~~~vv~~a~~~~~~~~~~~~~~pDlvllD~~lp~~~G~~~~~~l~~~~p~~~iivl 86 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIIL 86 (215)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCEEEE
T ss_conf 57999839899999999999758992899998999999999864499899980899899874123356541887736886
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|++.+.....++.+.|+.+|+.||.++++|.++|+.+.+-
T Consensus 87 t~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G 126 (215)
T PRK10403 87 TVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 3243236789987468766884899999999999999849
No 55
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.86 E-value=3.7e-20 Score=141.77 Aligned_cols=120 Identities=21% Similarity=0.213 Sum_probs=112.1
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCC---CCHHHHHHHHHHHCCC
Q ss_conf 986-6999759989999999999988-98999-9999799999997189989999836559---9979999999985899
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPE---MDGIELARRATELDPD 74 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~---~dG~el~~~ir~~~~~ 74 (122)
|++ ||+||||++.+|..++..|+.. +++|. .+.||.++++.+.+.+||++++|+.||+ +||+++++++|+.+|+
T Consensus 1 M~~irIlIvDDh~lvr~Gl~~~L~~~~~~~vvg~a~~~~~~~~~~~~~~pDvvllDl~mpg~~~~dGl~~~~~i~~~~p~ 80 (216)
T PRK10840 1 MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 99888999889799999999998159996899987999999999862398989982677999887899999999985899
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8599994379789999999769986997697989999999999603
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++|+++|++.+.....++.+.|+.+|+.|--.+++|.++|+.+.+-
T Consensus 81 ~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~G 126 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 8089984778789999998589748998789999999999999879
No 56
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.86 E-value=5.2e-20 Score=140.88 Aligned_cols=117 Identities=28% Similarity=0.347 Sum_probs=111.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC-CEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 69997599899999999999889-89999-99979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G-~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
+||+|||++.+|..++..|+..+ ++|.. +.||.++++.+...+||++++|+.||+++|+++++.+++..|+++++++|
T Consensus 2 ~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vvvlt 81 (211)
T COG2197 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLEALKQLRARGPDIKVVVLT 81 (211)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 49998097779999999998689966999827889999985137998899837889987599999999868997299996
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+.....++++.|+++|+.|+.++++|.++|+.++.-
T Consensus 82 ~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 778989999999779969986799999999999999758
No 57
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=1.1e-19 Score=138.93 Aligned_cols=117 Identities=24% Similarity=0.296 Sum_probs=110.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988-98999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
+|||||||+.+.++-+.+++.. ||.+. .|.++++|...+....||+|++|+-||+.+|++++..+++.+...-||++|
T Consensus 2 ~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iT 81 (224)
T COG4565 2 NVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVIT 81 (224)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEEE
T ss_conf 28997086589999999997389953898606499999999840899799960267985077999998468997889995
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+-++.+...+++..|+.+||.|||..+.|..++.+..+.
T Consensus 82 AA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~ 120 (224)
T COG4565 82 AASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQK 120 (224)
T ss_pred CCCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHHHH
T ss_conf 344378999999658232205634099999999999999
No 58
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.83 E-value=3.8e-19 Score=135.75 Aligned_cols=114 Identities=21% Similarity=0.296 Sum_probs=105.5
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 699975998999999999998-898999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
||+||||++.+|..++..|+. .++++. .++|+.++++.+.+.+||++++|+.||+++|+++++++++ .++++++|
T Consensus 3 ~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~~~~~~~~dvvllD~~mp~~~g~~~~~~l~~---~~~vivls 79 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPK---GMATIMLS 79 (196)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHC---CCCEEEEE
T ss_conf 999987979999999999812999599999899999999887449999998788788620779999843---87489997
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++.+.....++.+.|+.+|+.|+.++++|.++|+.+.+-
T Consensus 80 ~~~~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~G 118 (196)
T PRK10360 80 VHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG 118 (196)
T ss_pred ECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 307599999999759988997789999999999999869
No 59
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.83 E-value=6.8e-20 Score=140.20 Aligned_cols=116 Identities=25% Similarity=0.338 Sum_probs=108.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCC----HHHHHHHHHHHCCCCCEEE
Q ss_conf 99975998999999999998898999999979999999718998999983655-999----7999999998589985999
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD----GIELARRATELDPDLKVMF 79 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP-~~d----G~el~~~ir~~~~~~pii~ 79 (122)
+||||||+..++.++=.|.. +|++..|+|-++|++.++.+.|.+|.||+.|| +.| |+..+++|-+..|+++||+
T Consensus 1 LLiVeDD~glQKQLkWs~G~-~Ye~~~A~DR~sAiA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~~P~TKVIV 79 (451)
T TIGR02915 1 LLIVEDDLGLQKQLKWSFGA-DYEVAVAADRESAIALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIV 79 (451)
T ss_pred CCEEECCHHHHHHHHHHCCC-CCEEEEECCHHHHHHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 92453686656787641578-84035534757899986056996477367557898874589999999996389804899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 943797899999997699869976979899999999996036
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
+||..+.+-+.+|.+.|++||-+|||+++.|--.|.|++.++
T Consensus 80 iTGN~~r~NAlkAi~lGAYDFyqKP~d~d~L~liv~RAf~L~ 121 (451)
T TIGR02915 80 ITGNDDRENALKAIGLGAYDFYQKPIDPDVLKLIVDRAFRLY 121 (451)
T ss_pred EECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 866898388999964375101357875789999999988888
No 60
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.83 E-value=8.2e-20 Score=139.72 Aligned_cols=114 Identities=31% Similarity=0.498 Sum_probs=105.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
|++|||||..+...+..+|++.|..+..++...+|++.+.+..||+|++|+.||+|+|+++++++++..+.+|||++|+|
T Consensus 2 ~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifIssh 81 (361)
T COG3947 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFISSH 81 (361)
T ss_pred CEEEECCHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27998463899999999998611021006887889999984388779998523786087899999875314868999630
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 978999999976998699769798999999999960
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
... +..+......+|+.||++++.|-.+|.+.+.
T Consensus 82 ~ey--a~dsf~~n~~dYl~KPvt~ekLnraIdr~~k 115 (361)
T COG3947 82 AEY--ADDSFGMNLDDYLPKPVTPEKLNRAIDRRLK 115 (361)
T ss_pred HHH--HHHHCCCCHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 565--2320355667541688888899999998740
No 61
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.82 E-value=1.3e-18 Score=132.53 Aligned_cols=119 Identities=36% Similarity=0.567 Sum_probs=107.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH-HHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 86699975998999999999998898999999979-999999718-9989999836559997999999998589985999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA-SAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~-~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
..+||+|||++.+|..++..|+..|+.+..+.+|. +|++.+++. .||++++|+.||++||+++++++|+..+.+|+++
T Consensus 5 ~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pvv~ 84 (130)
T COG0784 5 GLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRARGPNIPVIL 84 (130)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 88899978999999999999987797899957839999999862789999998068878888999999997189996899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHH-HHHHHHHHHHC
Q ss_conf 943797899999997699869976979899-99999999603
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRD-LVNEVNRLLTI 120 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~-L~~~i~~~l~~ 120 (122)
+|++........+...|+.+|+.||+...+ |...+++.+..
T Consensus 85 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 85 LTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 986786765999997687689758998799999999999864
No 62
>PRK09191 two-component response regulator; Provisional
Probab=99.82 E-value=2.8e-19 Score=136.54 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=101.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 986699975998999999999998898999-999979999999718998999983655-999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii 78 (122)
++.|||||||++.+..-+...|++.||+|. .|.++.+|++++++++||++++|++|+ ++||++..+.|++. -++|+|
T Consensus 136 ~~~rILIVEDE~lIAmdLe~~l~~lG~~V~GiA~t~~eAl~la~~~~PDlvL~DI~L~d~~sGIdaa~~I~~~-~~iPvI 214 (261)
T PRK09191 136 VATSVLIIEDEPIIAMDLEQLVESLGHRVVGIARTRAEAVALAKKTRPGLILADIQLADGSSGIDAVNDILKT-FDVPVI 214 (261)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHH-CCCCEE
T ss_conf 4788799858599999999999987996787627899999997425989899953479998799999999982-899989
Q ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99437978999999976998699769798999999999960
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
++|+|++.-.... ...-..+++|||+++.+..+|.++|-
T Consensus 215 FiTAyperlltg~--~~ep~~li~KPf~~~~v~aai~qAlf 253 (261)
T PRK09191 215 FITAFPERLLTGE--RPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred EECCCHHHHCCCC--CCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 9777846530278--88874035698988999999999997
No 63
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.80 E-value=3e-18 Score=130.36 Aligned_cols=114 Identities=25% Similarity=0.367 Sum_probs=99.2
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCC-EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 699975998999999999998898-999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGY-EVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~-~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
||+||||++..|+.++.++++.+. ++. .+.||.+|++.+.++.||++++|+.||++||+++++.++. ....++|++|
T Consensus 3 ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~-~~~~~iIFvT 81 (239)
T PRK11697 3 KVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEALGAIHRLKPDVVFLDIQMPRISGLELVGMLDP-EHMPYIVFVT 81 (239)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCC-CCCCEEEEEE
T ss_conf 999996999999999999975879899999899999999998539999998399869599999998373-3498699995
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 379789999999769986997697989999999999603
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++++ .+.++.+.++.+||.||++.++|..++.++.+.
T Consensus 82 ~~~e--~a~~af~~~a~dYllKP~~~e~l~~~l~r~~~~ 118 (239)
T PRK11697 82 AFDE--YAIKAFEEHAFDYLLKPIDPARLAKTLARLRQD 118 (239)
T ss_pred CCHH--HHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 8689--999997309726653899999999999999997
No 64
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.75 E-value=4.8e-17 Score=123.15 Aligned_cols=114 Identities=23% Similarity=0.429 Sum_probs=109.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999999998589985999943
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
+..|+||||..+.+.+++.++..||.|..|.++++|+...++.+|.-.++|+.|-+-+|+++++.+++..++..+|++||
T Consensus 10 ~~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLTG 89 (182)
T COG4567 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLTG 89 (182)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCEEEEEEC
T ss_conf 60589618769999999998606862576144999999985179852889864068874689999982497643898845
Q ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 7978999999976998699769798999999999
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
|++...+..+.+.|+++||.||-+-++++.++.+
T Consensus 90 y~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~ 123 (182)
T COG4567 90 YASIATAVEAVKLGACDYLAKPADADDILAALLR 123 (182)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 1179999999986245540797776899999860
No 65
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.71 E-value=5.7e-16 Score=116.69 Aligned_cols=103 Identities=24% Similarity=0.372 Sum_probs=93.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889--899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
-|||||||+...|..+++.|...| .-|..|.||.+|++.+.+..||+|.+|++||.|||+++++.|.+. ..+|||++
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~-~p~pVimv 80 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRL-RPLPVIMV 80 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHCC-CCCCEEEE
T ss_conf 47999858199999999998308973799733787999999972299789972566445479999998447-99868999
Q ss_pred ECCCCH--HHHHHHHHCCCCEEEECCCC
Q ss_conf 437978--99999997699869976979
Q gi|254780312|r 81 TGFAAV--ALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 81 s~~~~~--~~~~~~~~~g~~~~l~KP~~ 106 (122)
|+.+.. +...++++.|+.+|+.||..
T Consensus 81 sslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 81 SSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred ECCCCCCHHHHHHHHHCCCCEEECCCCC
T ss_conf 5145213799999984574213217876
No 66
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.69 E-value=8.2e-17 Score=121.75 Aligned_cols=114 Identities=10% Similarity=0.143 Sum_probs=100.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
-||.|+|+|....+-...=+.-.|.|..+.+...|++.+....+|||++|+.||++||++|++++|+.+|++|+|++|+.
T Consensus 19 ~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~a~~r~~~~~~DCvv~dy~~~~~dGieLLe~vRe~~p~lP~Il~t~~ 98 (674)
T PRK13558 19 GVLFAGSDPETGPAACDLDEDGRFDVTQIRDFVAARDRVDDPDIDCVVAVHEPDGFDGVAFLEAVRQTHAEFPVVVVPTA 98 (674)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99994688877752345666774212763238889865315898769965657888679999998613899988999567
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 978999999976998699769798999999999960
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
++.+.+.+++..|+.+|+.| +.+++...+.+.+.
T Consensus 99 gsE~vas~AI~AGvt~Ylp~--~~~~~~~~~~~~i~ 132 (674)
T PRK13558 99 VDEDVARRAVDADATGLVPA--VSEDATAAIADRIE 132 (674)
T ss_pred CCHHHHHHHHHHCHHHHCCC--CCHHHHHHHHHHHH
T ss_conf 85899999875163643344--71768999999999
No 67
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.65 E-value=4.6e-15 Score=111.28 Aligned_cols=115 Identities=15% Similarity=0.176 Sum_probs=104.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH-HHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999-9999799999997189989999836559997999999-9985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR-ATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~-ir~~~~~~pii~~ 80 (122)
.|||+++|....+..++..|++. +.+. .+.||.++++.+ .+||+|++|+.||+++|++.+++ +++..|+++|+++
T Consensus 11 ~~vlL~~dp~l~~~~~a~~l~e~-l~v~~~l~~~~~al~~~--~~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliL 87 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLKQS-LAITGKLHNIQRSLDDI--SSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLL 87 (216)
T ss_pred EEEEEECCCHHHHHHHHHHHHHH-HHHHHEECCHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 38999558429999999988987-64763024776677644--7999899848878830899999999725999779999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|.+.+.+....+...|+.+|+.|-.++++|..+|+.+++-
T Consensus 88 Tt~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G 127 (216)
T PRK10100 88 NTPEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 6887489999997658766766899999999999999879
No 68
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.57 E-value=6e-14 Score=104.58 Aligned_cols=117 Identities=21% Similarity=0.252 Sum_probs=102.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 986699975998999999999998898999-9999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|+-|||++||++..+..+...|...||.+. ++.+|.++.+.....+||+||+|+.+|..| ..-.-.+.+.++..|+|+
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~~pDvVildie~p~rd-~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRRD-IIEALLLASENVARPIVA 82 (194)
T ss_pred CCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCEEEEECCCCCCC-HHHHHHHHHCCCCCCEEE
T ss_conf 6653034241135556789899875973876541344750677852998799966787732-899989860589987899
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 943797899999997699869976979899999999996
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
+|++++.....++.+.|+.+|+.||+++..|...+.-+.
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred EECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf 971678589999997387498834765421047999999
No 69
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.49 E-value=7.8e-13 Score=97.92 Aligned_cols=105 Identities=17% Similarity=0.072 Sum_probs=89.8
Q ss_pred HHHHHHHHHHCC---C--EE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 999999999889---8--99-99999799999997189989999836559997999999998589985999943797899
Q gi|254780312|r 15 RRFLIKALGKAG---Y--EV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 15 r~~l~~~L~~~G---~--~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~ 88 (122)
...++.+|+... | +| ..+++|.||+..+....+|++++|+.||++||+++++++++.+|++++|++|.+.+...
T Consensus 3 ~~gi~sl~~~~~~~~~~l~vv~e~~~g~EAl~~~~~~~v~~~LmDi~mP~~dGL~~~~~L~r~~P~vriLVLTm~d~e~~ 82 (205)
T PRK11475 3 SIGIESLFDKFPGNPYKLHIFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEAR 82 (205)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf 78899998418998348999505456999986288666438985389999766999999999789971899974768799
Q ss_pred HHHHH-HCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 99999-76998699769798999999999960
Q gi|254780312|r 89 NPDSN-APKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 89 ~~~~~-~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
..++. ..|+.+|+.|....++|.+++..++.
T Consensus 83 v~~aL~~aga~Gyl~K~~~~~eL~~Ai~~~~~ 114 (205)
T PRK11475 83 LIGSLSPSPLDGVLSKASTLEILQQELFLSLN 114 (205)
T ss_pred HHHHHHHHHCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99999984166888567889999999999870
No 70
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.40 E-value=1.6e-12 Score=96.00 Aligned_cols=113 Identities=28% Similarity=0.426 Sum_probs=98.6
Q ss_pred EEEEECCCHHHHHHHHHHHHHC-CCEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6999759989999999999988-98999-999979999999718998999983655999799999999858998599994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA-GYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~-G~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
+++++||++..|.-+...+... ++++. ++.++.++++.++...+|++++|+.||+++|++++++++...+..+|+++|
T Consensus 3 ~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Ivfvt 82 (244)
T COG3279 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDINGIELAARIRKGDPRPAIVFVT 82 (244)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEE
T ss_conf 51771476767999999988744211113312303178887602577699972376524499999861569885399998
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 3797899999997699869976979899999999996
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
++++. ...+.+..+.+|+.||++.+.|...+++..
T Consensus 83 ~~~~~--a~~afev~a~d~i~kp~~~~~l~~~l~~~~ 117 (244)
T COG3279 83 AHDEY--AVAAFEVEALDYLLKPISEERLAKTLERLR 117 (244)
T ss_pred EHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 61543--233313346677428542689999999988
No 71
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.15 E-value=2.3e-09 Score=77.11 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=102.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC--CCCCEEEE
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799999999858--99859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD--PDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~--~~~pii~~ 80 (122)
.+|++|||+......+...|... +.+....++.+++.......||++++|..||..+|++++..+|... ...|++.+
T Consensus 156 ~~il~v~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~ 234 (457)
T PRK09581 156 GRILLVDDDVSQAERIANILKEE-FRVDVLSDPEEALIRAAEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLL 234 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHHH-CCEEEECCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 61999879679999999997533-24688548699998743579768997565676646899999971434357329999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 4379789999999769986997697989999999999603
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
+...+.....++.+.|+.+|+.||++..++..++...+++
T Consensus 235 ~~~~~~~~~~~~~~~g~~d~~~~~~~~~e~~~r~~~~~~~ 274 (457)
T PRK09581 235 VDEDEDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred ECCCCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 5688616676664146522884378627555879999998
No 72
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=99.13 E-value=3.1e-10 Score=82.35 Aligned_cols=54 Identities=39% Similarity=0.663 Sum_probs=53.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 699975998999999999998898999999979999999718998999983655
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP 57 (122)
|||+|||++.+|..++..|++.||++.++.+|.+|++.+.++.||++++|+.||
T Consensus 2 kVLivdD~~~~~~~l~~~l~~~g~~v~~~~~g~~~~~~~~~~~~dlil~D~~mP 55 (55)
T smart00448 2 RILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEEKPDLILLDIMMP 55 (55)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 899993799999999999997899999988999999999749999999967687
No 73
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.08 E-value=4.9e-09 Score=75.14 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=91.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-HHHCCC-CCEEE
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979999999-985899-85999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA-TELDPD-LKVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i-r~~~~~-~pii~ 79 (122)
+++||++|+++..+..+...|+.+|++|..+.+..+ +.+.+||++++|+.||.++|.+..... ++..+. .++++
T Consensus 536 g~~vlvve~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~~~il 611 (920)
T PRK11107 536 GKRLLYVEPNSLAAQATLDLLSETPLEVTYSPTLSQ----LPEAHYDYLLLGCPVTFREPLTMLHERLAKAKSMTDFLIL 611 (920)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEECCCHHH----HHCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEE
T ss_conf 876999769778999999999974964575178877----5136888799616666654066789998630035784699
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 9437978999999976998699769798999999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
++............+.|+..++.||+++..|...+..
T Consensus 612 ~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 612 ALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred EECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 7156434557887642530211277768899998722
No 74
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.97 E-value=7.4e-10 Score=80.06 Aligned_cols=92 Identities=26% Similarity=0.367 Sum_probs=82.0
Q ss_pred CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 89999999799999997189989999836559997999999998589985999943797899999997699869976979
Q gi|254780312|r 27 YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 27 ~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
++|.+|.+|.+|+..+..+++|.+++|+.||+++|+++++++++. +.+ ++++|...+.....+..+.|+..|+.||.+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~~~~~~lld~~m~~~~~~~~~~~lk~~-~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (435)
T COG3706 13 KEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAE-PAT-VVMVTALDDSAPRVRGLKAGADDFLTKPVN 90 (435)
T ss_pred HHHHHCCCHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCC-CCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 546342542779999744898748741006886730199876358-751-699860378777556776313441367777
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 89999999999603
Q gi|254780312|r 107 LRDLVNEVNRLLTI 120 (122)
Q Consensus 107 ~~~L~~~i~~~l~~ 120 (122)
...+..+...+...
T Consensus 91 ~~~~~~r~~~l~~~ 104 (435)
T COG3706 91 DSQLFLRAKSLVRL 104 (435)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 17788752663144
No 75
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.82 E-value=1.4e-07 Score=66.50 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=85.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
||||||||+.-|.-++.+|+=.|.++..+++++-.-.........+++..-.++ +..++++.+.+..|.+|++++..+
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg~~ 78 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLGEH 78 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 989986888999979999986499649954889889886378852999967852--099999999964889999998788
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9789999999769986997697989999999999
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
..... ...+-+-|.+|++...|.+.+++.
T Consensus 79 ~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 79 DSAAE-----LANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 75212-----055258707889879999999875
No 76
>pfam03709 OKR_DC_1_N Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.
Probab=97.49 E-value=0.0016 Score=42.05 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=67.7
Q ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 999999998898999999979999999718-9989999836559997999999998589985999943797899999997
Q gi|254780312|r 16 RFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA 94 (122)
Q Consensus 16 ~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~ 94 (122)
+.+...|+..||+|..+.+-.+++..+++. ...++++|| +....++++.|++++.++||.+++-....+......-
T Consensus 7 ~~l~~~l~~~~~~vv~~~~~~d~~~~~~~~~~i~avil~~---~~~~~~ll~~ir~~n~~lPvFl~~~~~~~~~vp~~~l 83 (111)
T pfam03709 7 RELAEALEATGREVVDATSTDDLLSLIETFTDIAAVVLSW---DDEARGLLDEIRRRNFDLPVFLLAETRTSEDVPLDVL 83 (111)
T ss_pred HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEEEEE---CHHHHHHHHHHHHHCCCCCEEEEECHHHHHCCCHHHH
T ss_conf 9999999978988997487899999998387876899984---6068999999997478999898844125750999999
Q ss_pred CCCCEEEEC-CCCHHHHHHHHHHHH
Q ss_conf 699869976-979899999999996
Q gi|254780312|r 95 PKNAKVLSK-PFHLRDLVNEVNRLL 118 (122)
Q Consensus 95 ~g~~~~l~K-P~~~~~L~~~i~~~l 118 (122)
..+.+|+-. --+++....+|.++.
T Consensus 84 ~~i~gfi~l~edt~~fia~~I~~aa 108 (111)
T pfam03709 84 REIDGFIELFEDTPEFIARQIEAAA 108 (111)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9887867365689899999999998
No 77
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=96.43 E-value=0.069 Score=32.31 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECC-CCCHH-HHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf 8999999999998898999---999979999999718998999983655-99979-9999999858-9985999943797
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI-ELARRATELD-PDLKVMFITGFAA 85 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~-el~~~ir~~~-~~~pii~~s~~~~ 85 (122)
..=.++++.+|+..||+|. .-.+.++..+.+.++.||+|.+-..|+ .+..+ ++.+.+|+.. +++| |++=|..-
T Consensus 13 ~iG~~iv~~~l~~~G~~V~~lG~~vp~e~~v~~a~~~~~d~I~lS~~~~~~~~~~~~~i~~l~~~g~~~i~-v~vGG~~~ 91 (119)
T cd02067 13 DIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIP-VLVGGAIV 91 (119)
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCE-EEEECCCC
T ss_conf 78999999999978998998999999999999999709999999622024268999999999976999985-99989989
Q ss_pred HHHHHHHHHCCCCEEEECCC
Q ss_conf 89999999769986997697
Q gi|254780312|r 86 VALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 86 ~~~~~~~~~~g~~~~l~KP~ 105 (122)
......+.+.|++.|-.-..
T Consensus 92 ~~~~~~~~~~Gad~~~~~a~ 111 (119)
T cd02067 92 TRDFKFLKEIGVDAYFGPAT 111 (119)
T ss_pred CHHHHHHHHCCCCEEECCHH
T ss_conf 74399999869979977807
No 78
>PRK13566 anthranilate synthase; Provisional
Probab=96.42 E-value=0.017 Score=35.90 Aligned_cols=80 Identities=18% Similarity=0.234 Sum_probs=61.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEE--ECCCCCHHHHHHHHH-HHCCCCCEE
Q ss_conf 86699975998999999999998898999999979999999718998999983--655999799999999-858998599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI--VMPEMDGIELARRAT-ELDPDLKVM 78 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~--~mP~~dG~el~~~ir-~~~~~~pii 78 (122)
.+|||+||...+.-..+..+|++.|.+|...-++ .+.+.+....||+|++-= .-|.--|.. ..|. ....++|+.
T Consensus 523 g~rVLlVDn~DSFvhtLa~YlrqlGAeV~vvR~d-~~~~~l~~~~pD~vvlSPGPG~P~d~g~~--~~i~~~~~~~iPil 599 (724)
T PRK13566 523 GKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYP-VAEEILDRVNPDLVVLSPGPGRPEDFDCK--ATIDAALARNLPIF 599 (724)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCEEEEEECC-CCHHHHHHHCCCEEEECCCCCCCHHCCCH--HHHHHHHHCCCCEE
T ss_conf 7579998465327999999999819879998189-87677763188989987999790005585--99999985799879
Q ss_pred -EEECCC
Q ss_conf -994379
Q gi|254780312|r 79 -FITGFA 84 (122)
Q Consensus 79 -~~s~~~ 84 (122)
++-|+.
T Consensus 600 GVCLGhQ 606 (724)
T PRK13566 600 GVCLGLQ 606 (724)
T ss_pred EECCCHH
T ss_conf 9771276
No 79
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.19 E-value=0.034 Score=34.14 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=77.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH-HHHHHCCCC-CEEE
Q ss_conf 86699975998999999999998898999999979999999718998999983655999799999-999858998-5999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR-RATELDPDL-KVMF 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~-~ir~~~~~~-pii~ 79 (122)
.||++.||-|....+....+|...|.+|.--.+ +..+-+..||.+++.+--+...-..+.. ++.+.-.-+ -+|+
T Consensus 11 gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~~hYD~~Ll~vavtfr~n~tm~~~~l~~Al~mtd~vil 86 (140)
T COG4999 11 GKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPPAHYDMMLLGVAVTFRENLTMQHERLAKALSMTDFVIL 86 (140)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEECCC----CCCCCHHHHCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 664577668608999999998468826884233----1002744520346536665568803889999999865313677
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf 94379789999999769986997697989999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i 114 (122)
---......+++..+.|+.+.+.||++..+|+...
T Consensus 87 alPs~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 87 ALPSHAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred ECCCHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHH
T ss_conf 36728887599996314286740765065667899
No 80
>PRK07206 hypothetical protein; Provisional
Probab=95.95 E-value=0.15 Score=30.22 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=69.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-------------------------HHHHHHHHHCCCCEEEEEEE
Q ss_conf 98669997599899999999999889899999997-------------------------99999997189989999836
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-------------------------ASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-------------------------~~al~~~~~~~~dlii~D~~ 55 (122)
|+|+|+|||--.. ...+...+.+.||.+..+.|. .+.++.+++..|+.||...
T Consensus 1 ~~~~vviVDp~St-G~~la~a~~~~G~~~v~V~S~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~aVi~g~- 78 (415)
T PRK07206 1 MMKKVVIVDPFSS-GKFLAPAFKKRGIELIAVTSACDLDPLYYAGFDENIYRQQRIIKHIDETIEFLRQLGPDAVIAGA- 78 (415)
T ss_pred CCCEEEEECCCCC-HHHHHHHHHHCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCEEEECC-
T ss_conf 9855999867651-87999999973982899983798843544232434343321057899999999862972999785-
Q ss_pred CCCCCHHHHHHHHHHH--------------------------CCCCCEEEEECCCCHHHHHHHH-HCC--CCEEEECCCC
Q ss_conf 5599979999999985--------------------------8998599994379789999999-769--9869976979
Q gi|254780312|r 56 MPEMDGIELARRATEL--------------------------DPDLKVMFITGFAAVALNPDSN-APK--NAKVLSKPFH 106 (122)
Q Consensus 56 mP~~dG~el~~~ir~~--------------------------~~~~pii~~s~~~~~~~~~~~~-~~g--~~~~l~KP~~ 106 (122)
..|.+++.++.+. ...+|..-.-..++.+....+. +.+ ..-++.||.+
T Consensus 79 ---E~gV~lAd~La~~LgLp~~N~~~~~~aRRdK~~m~~~L~~aGl~~~~~~~~~~~~e~~~~~~~~~~~~~PvVvKP~~ 155 (415)
T PRK07206 79 ---ESGVELADRLAERLGLCYANAPALSSARRNKYEMINALANAGLPAIRQIDTADWEEASAWIRVNNLWDSPVVIKPLE 155 (415)
T ss_pred ---HHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf ---56599999999986899899556887745999999999975998553885299999999998605579998995899
Q ss_pred ------------HHHHHHHHHHHHHCC
Q ss_conf ------------899999999996036
Q gi|254780312|r 107 ------------LRDLVNEVNRLLTIK 121 (122)
Q Consensus 107 ------------~~~L~~~i~~~l~~~ 121 (122)
.+++..+.++++...
T Consensus 156 gagS~gV~~c~~~~el~~a~~~i~~~~ 182 (415)
T PRK07206 156 SAGSDGVFFCPDKQDAYHAFNAILGKA 182 (415)
T ss_pred CCCCCCEEEECCHHHHHHHHHHHHCCC
T ss_conf 998799899799999999999985665
No 81
>TIGR01815 TrpE-clade3 anthranilate synthase; InterPro: IPR010112 This entry represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.; GO: 0004049 anthranilate synthase activity, 0000162 tryptophan biosynthetic process.
Probab=95.75 E-value=0.057 Score=32.80 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=71.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEE-E
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979999999985-8998599-9
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVM-F 79 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii-~ 79 (122)
.++||+||.+.+.--.|+.+|++.|-.|.+.-.+- |-+++.+..||||++-=.=-.-.-|++...|++. ..++||. +
T Consensus 524 G~~iLLvDHeDSFVHTLAnY~RqTGAsVTTlRh~~-ae~~fd~~rPDLVVLSPGPGrP~dFdv~~Ti~aa~ar~lP~FGV 602 (726)
T TIGR01815 524 GKRILLVDHEDSFVHTLANYLRQTGASVTTLRHSF-AEELFDEERPDLVVLSPGPGRPKDFDVKETIKAALARDLPVFGV 602 (726)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHH-HHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 87799985475437777888763487553043047-89997327998898687312387544788999999728985774
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 94379789999999769986997697
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
|-| -+.+.+.. -|.-+.|..|.
T Consensus 603 CLG--LQg~vEaf--GG~L~vL~~P~ 624 (726)
T TIGR01815 603 CLG--LQGLVEAF--GGELDVLAIPV 624 (726)
T ss_pred HHH--HHHHHHHH--CCCCCCCCCCC
T ss_conf 134--68999874--67213578887
No 82
>pfam02310 B12-binding B12 binding domain. This domain binds to B12 (adenosylcobamide), it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase.
Probab=94.17 E-value=0.53 Score=27.03 Aligned_cols=92 Identities=20% Similarity=0.200 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEEC-CCCCH-HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 59989999999999988989999---9997999999971899899998365-59997-9999999985899859999437
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVM-PEMDG-IELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~m-P~~dG-~el~~~ir~~~~~~pii~~s~~ 83 (122)
|-.+.-...++.+|++.||+|.. ..+.++-.+.+++..||+|-....+ +.++. .++++.+|+..|++++++==.+
T Consensus 11 ~~~plGl~~la~~l~~~G~~V~~~d~~~~~~~i~~~i~~~~pdiVgiS~~~~~~~~~~~~l~~~ik~~~p~~~iv~GG~~ 90 (121)
T pfam02310 11 DLHPLGLNYVAAALRAAGFEVILLGADVPPEDIVEAIRAENPDVVGLSALMTTNLPAAKELARLLKRIRPGVKVVVGGPH 90 (121)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 75848999999999985995001024799999999999809999999523211211368999999985989759983876
Q ss_pred CCHHHHHHHHH--CCCCEEE
Q ss_conf 97899999997--6998699
Q gi|254780312|r 84 AAVALNPDSNA--PKNAKVL 101 (122)
Q Consensus 84 ~~~~~~~~~~~--~g~~~~l 101 (122)
... ......+ .+++..+
T Consensus 91 ~t~-~p~~~l~~~~~~D~vv 109 (121)
T pfam02310 91 PTA-DPEEVLRAAPGIDDVV 109 (121)
T ss_pred CCC-CHHHHHHCCCCCCEEE
T ss_conf 341-8999984089975899
No 83
>PRK06895 para-aminobenzoate synthase component II; Provisional
Probab=93.98 E-value=0.35 Score=28.09 Aligned_cols=80 Identities=20% Similarity=0.249 Sum_probs=50.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9866999759989999999999988989999999799999997189989999836--55999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii 78 (122)
|.+||||||.-.+.-..+.+.+++.|..+.....-.-..+.+ ..|+.|++-=. -|... -++...+++.....||+
T Consensus 1 M~~kILiiD~~dsfT~ni~~~lr~lg~~~~v~~~~~~~~~~~--~~~~~IIlSpGPg~p~~~-~~~~~~i~~~~~~~PIL 77 (191)
T PRK06895 1 MATNLLIINNHDSFTFNLVDLIRKLGVPMKVVNVEDLDLDEV--ENFSHILISPGPDVPRAY-PQLFAMLERYYQQKSIL 77 (191)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH--HCCCEEEEECCCCCCCCC-CHHHHHHHHHCCCCCEE
T ss_conf 998699996988489999999987799699984784899898--558969990899980105-22499999860689878
Q ss_pred -EEECC
Q ss_conf -99437
Q gi|254780312|r 79 -FITGF 83 (122)
Q Consensus 79 -~~s~~ 83 (122)
++-|+
T Consensus 78 GIClG~ 83 (191)
T PRK06895 78 GVCLGH 83 (191)
T ss_pred EECHHH
T ss_conf 982999
No 84
>PRK05637 anthranilate synthase component II; Provisional
Probab=93.75 E-value=0.2 Score=29.53 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=55.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE--EECCCCCHHHHHHHHHHHCCCCCEE-E
Q ss_conf 669997599899999999999889899999997999999971899899998--3655999799999999858998599-9
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD--IVMPEMDGIELARRATELDPDLKVM-F 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D--~~mP~~dG~el~~~ir~~~~~~pii-~ 79 (122)
+|||+||.-.+.-.-+.++++..|+++....+ ...++.+....||.|++- =.-|.-.| .+.+.++....++||+ +
T Consensus 2 ~~ILlIDnyDSFT~Nl~~~l~~~g~~v~V~rn-~~~~~~~~~~~pd~ivlSPGPg~P~d~g-~~~~~~~~~~~~iPILGI 79 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRN-TVPVETILAANPDLICLSPGPGYPADAG-NMMALIERTLGQIPLLGI 79 (208)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHCCCCEEEECCCCCCHHHCC-CHHHHHHHHHCCCCEEEH
T ss_conf 77999948897599999999867990799969-9999999851999599999999957775-749999997356982211
Q ss_pred EECC
Q ss_conf 9437
Q gi|254780312|r 80 ITGF 83 (122)
Q Consensus 80 ~s~~ 83 (122)
+-|+
T Consensus 80 CLGh 83 (208)
T PRK05637 80 CLGY 83 (208)
T ss_pred HHHH
T ss_conf 4778
No 85
>PRK05993 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.44 Score=27.47 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=49.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 9866999759989999999999988989999999799999997189989999836
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
|+|.|||.--+..+-..++..|.+.|+.|.....-.+.++.+.......+.+|+.
T Consensus 3 m~K~vlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~ 57 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCAHALQKRGWRVFATCRKPEDIAALEAEGLEAFYLDYA 57 (277)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECC
T ss_conf 9868999256869999999999987999999979999999998489819997266
No 86
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=93.68 E-value=0.65 Score=26.48 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=66.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979-9999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii~~s 81 (122)
++|||--.-..+...+++.|.+.|-+|..+..-++.|+-.....|++.-.=...-+.++. ++.+++++.+|++-+++--
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvliNN 85 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLINN 85 (245)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCCCCHHEEEECCCCHHHHHHHHHHHHHHCCCHHEEEEC
T ss_conf 67999379643659999999983897999657499999998609413156513203566999999998629861134303
Q ss_pred C
Q ss_conf 3
Q gi|254780312|r 82 G 82 (122)
Q Consensus 82 ~ 82 (122)
+
T Consensus 86 A 86 (245)
T COG3967 86 A 86 (245)
T ss_pred C
T ss_conf 0
No 87
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=93.58 E-value=0.68 Score=26.38 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=81.0
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH----HHHHHC
Q ss_conf 69997----59989999999999988989999---99979999999718998999983655999799999----999858
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR----RATELD 72 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~----~ir~~~ 72 (122)
||++. |-...-.+++...|+..||+|.- ..+.++..+...++..|+|.+-.-- + .+..+++ .+++..
T Consensus 5 ~vvi~~~g~D~Hd~G~~iva~~l~~~GfeVi~lG~~~~pe~~v~~A~~~~ad~igiSsl~-G-~~~~~~~~l~~~l~~~g 82 (137)
T PRK02261 5 TVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLY-G-HGEIDCRGLREKCIEAG 82 (137)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCC-C-CCCHHHHHHHHHHHHCC
T ss_conf 799982188611788999999999789749846887999999999987399999971111-2-66127999999999679
Q ss_pred -CCCCEEEE-----ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf -99859999-----43797899999997699869976979899999999996036
Q gi|254780312|r 73 -PDLKVMFI-----TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 73 -~~~pii~~-----s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.++|+++= ......+......+.|++......-+.++..+.+++.|..|
T Consensus 83 ~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~~r 137 (137)
T PRK02261 83 LGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLNAR 137 (137)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9999699836216788783999999997797988797889999999999986339
No 88
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=93.55 E-value=0.68 Score=26.35 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=64.1
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECC-CCCHH-HHHHHHHHHCC-
Q ss_conf 69997----59989999999999988989999--9-9979999999718998999983655-99979-99999998589-
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVVS--C-NNGASAYDKVREEPFSLLLTDIVMP-EMDGI-ELARRATELDP- 73 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~~--a-~~g~~al~~~~~~~~dlii~D~~mP-~~dG~-el~~~ir~~~~- 73 (122)
+|++. |-+..=.+++..+|+..||+|.- + ...++.++.++++.||+|-+-..|+ .+... ++.+.+|+...
T Consensus 84 ~vv~~tv~Gd~H~lG~~mv~~~l~~~G~~V~~LG~~vp~e~~v~~~~~~~~divglS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 84 KVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 59996279877389999999999878977997789999799999999729899999625668899999999999972898
Q ss_pred -CCCEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf -9859999437978999999976998699769
Q gi|254780312|r 74 -DLKVMFITGFAAVALNPDSNAPKNAKVLSKP 104 (122)
Q Consensus 74 -~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP 104 (122)
++||++ =|..-.+ .-+...|++.|-.-+
T Consensus 164 ~~v~i~v-GG~a~~~--~~a~~~GAD~~a~da 192 (201)
T cd02070 164 DKVKVMV-GGAPVNQ--EFADEIGADGYAEDA 192 (201)
T ss_pred CCCEEEE-ECCCCCH--HHHHHHCCCEECCCH
T ss_conf 8985999-8801799--999992988784799
No 89
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=93.25 E-value=0.77 Score=26.05 Aligned_cols=89 Identities=15% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCEEEEECCH--HHHHH-HHHHCCCCEEEEEEECCCCC-HHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 999999999889899999997--99999-99718998999983655999-799999999858998599994379789999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNG--ASAYD-KVREEPFSLLLTDIVMPEMD-GIELARRATELDPDLKVMFITGFAAVALNP 90 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g--~~al~-~~~~~~~dlii~D~~mP~~d-G~el~~~ir~~~~~~pii~~s~~~~~~~~~ 90 (122)
...++..|++.||+|...... .+.++ .++...||+|-....-+... ..++++.+|+..|++++++==.+... ...
T Consensus 5 l~ylaa~L~~~G~~v~~~d~~~~~~~~e~~~~~~~pdvvg~s~~~~~~~~~~~~~~~~k~~~p~~~iv~GG~h~t~-~p~ 83 (127)
T cd02068 5 LAYLAAVLEDAGFIVAEHDVLSADDIVEDIKELLKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF-FPE 83 (127)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC-CHH
T ss_conf 9999999997899579985787620399998649969999997688999999999999997899789985987454-999
Q ss_pred HHHHCCCCEEEECC
Q ss_conf 99976998699769
Q gi|254780312|r 91 DSNAPKNAKVLSKP 104 (122)
Q Consensus 91 ~~~~~g~~~~l~KP 104 (122)
...+....+|+..-
T Consensus 84 ~~l~~~~~D~vv~G 97 (127)
T cd02068 84 EILEEPGVDFVVIG 97 (127)
T ss_pred HHHHCCCCCEEEEC
T ss_conf 99707587789968
No 90
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=92.96 E-value=0.7 Score=26.28 Aligned_cols=96 Identities=21% Similarity=0.231 Sum_probs=58.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH----HHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHHCCCCCE
Q ss_conf 69997599899999999999889899999997999----9999718998999983655999--79999999985899859
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA----YDKVREEPFSLLLTDIVMPEMD--GIELARRATELDPDLKV 77 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~a----l~~~~~~~~dlii~D~~mP~~d--G~el~~~ir~~~~~~pi 77 (122)
-++.+||....+..+.++=-....--.-..|-++. +..+.++.-=.+++|..||..+ |+++.++.++.. ++|
T Consensus 32 D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~l~~g~~valVSDAG~P~ISDPG~~LV~~a~~~g--i~V 109 (275)
T COG0313 32 DVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPLLKKGKSVALVSDAGTPLISDPGYELVRAAREAG--IRV 109 (275)
T ss_pred CEEEEECCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCC--CCE
T ss_conf 899995147799999973999834503478677879999999866984899805899766685099999999869--918
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 999437978999999976998699
Q gi|254780312|r 78 MFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 78 i~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
+.+.|-+..-.+.-+...-...|.
T Consensus 110 ~~lPG~sA~~tAL~~SGl~~~~F~ 133 (275)
T COG0313 110 VPLPGPSALITALSASGLPSQRFL 133 (275)
T ss_pred EECCCCCHHHHHHHHCCCCCCCEE
T ss_conf 966883499999997589999726
No 91
>PRK09522 bifunctional anthranilate synthase/anthranilate phosphoribosyltransferase; Provisional
Probab=92.82 E-value=0.56 Score=26.87 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=58.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEE--ECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 669997599899999999999889899999997---9999999718998999983--65599979999999985899859
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---ASAYDKVREEPFSLLLTDI--VMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g---~~al~~~~~~~~dlii~D~--~mP~~dG~el~~~ir~~~~~~pi 77 (122)
.|||+||.-.+.---+.++|+..|.+|....|- ...++.+....|+.|++-= .-|.-.|. ..+-++....++||
T Consensus 2 ~~ILlIDNyDSFTyNL~~~l~~~g~~v~V~rnd~~~~~~~e~~~~~~p~~IVlSPGPG~P~dag~-~~~ii~~~~~~iPI 80 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERLATMSNPVLMLSPGPGVPSEAGC-MPELLTRLRGKLPI 80 (531)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHCCCCEEEECCCCCCCHHCCC-HHHHHHHHCCCCCE
T ss_conf 70999828886288999999866995699969983130199997249596998999989023657-39999986599998
Q ss_pred E-EEECC
Q ss_conf 9-99437
Q gi|254780312|r 78 M-FITGF 83 (122)
Q Consensus 78 i-~~s~~ 83 (122)
+ ++-|+
T Consensus 81 LGICLGh 87 (531)
T PRK09522 81 IGICLGH 87 (531)
T ss_pred EEECHHH
T ss_conf 9987877
No 92
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.80 E-value=0.42 Score=27.61 Aligned_cols=80 Identities=16% Similarity=0.184 Sum_probs=59.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC--CCCCHHHHHHHHHHHCCCCCEE-E
Q ss_conf 669997599899999999999889899999997999999971899899998365--5999799999999858998599-9
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATELDPDLKVM-F 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~pii-~ 79 (122)
.+||+||...+.---+..+|++.|++|...-|.......+....||.|++-=.= |.-.| -..+.|++...++|++ +
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~~~pd~iviSPGPG~P~d~G-~~~~~i~~~~~~~PiLGV 80 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEALKPDAIVISPGPGTPKDAG-ISLELIRRFAGRIPILGV 80 (191)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCC-HHHHHHHHHCCCCCEEEE
T ss_conf 5699997744249999999997399349998896587788604999899848997937736-189999986089988998
Q ss_pred EECC
Q ss_conf 9437
Q gi|254780312|r 80 ITGF 83 (122)
Q Consensus 80 ~s~~ 83 (122)
+-|+
T Consensus 81 CLGH 84 (191)
T COG0512 81 CLGH 84 (191)
T ss_pred CCCH
T ss_conf 7437
No 93
>PRK08017 short chain dehydrogenase; Provisional
Probab=92.40 E-value=1 Score=25.34 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=49.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 98669997599899999999999889899999997999999971899899998365
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m 56 (122)
|+|+|||.--...+-..++..|.+.|+.|..+..-.+.++.+.+..+..+.+|+.=
T Consensus 1 M~K~vlITGassGIG~a~A~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~D~~~ 56 (256)
T PRK08017 1 MQKSVLITGCSSGIGLESALELKRQGFRVLAGCRKPDDVARMNSMGFTGVLIDLDS 56 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCC
T ss_conf 99789996587689999999999879999999699899999985699469983589
No 94
>pfam00563 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.
Probab=92.27 E-value=0.77 Score=26.04 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC----CCCHHHHHHHHHHHCCCC-CEEEEECC
Q ss_conf 989999999999988989999--99979999999718998999983655----999799999999858998-59999437
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP----EMDGIELARRATELDPDL-KVMFITGF 83 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP----~~dG~el~~~ir~~~~~~-pii~~s~~ 83 (122)
+......+. .|+..||.+.. +.+|...++.+..-+||.|=+|..+- +-+...+++.+.+..... .-++.+|.
T Consensus 130 ~~~~~~~i~-~lk~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKid~~~~~~~~~~~~~~~~~~l~~~a~~~~~~viaeGV 208 (233)
T pfam00563 130 DLRLLEALA-RLRSLGFRLALDDFGTGYSSLSYLSRLPPDYIKIDRSFIKDLSDPESRALLRALIALARELGIKVVAEGV 208 (233)
T ss_pred CHHHHHHHH-HHHHCCCCEEECCCCCCCCCHHHHHHCCCCEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 199999999-9997799589617899976778997488878999899984077721899999999999987998999708
Q ss_pred CCHHHHHHHHHCCCCE----EEECC
Q ss_conf 9789999999769986----99769
Q gi|254780312|r 84 AAVALNPDSNAPKNAK----VLSKP 104 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~----~l~KP 104 (122)
.+.+....+.+.|++. |+.||
T Consensus 209 E~~~~~~~l~~~Gv~~~QG~~~~~P 233 (233)
T pfam00563 209 ETEEQLELLKELGIDYVQGYLFSKP 233 (233)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCCC
T ss_conf 6399999999759998316810279
No 95
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=91.92 E-value=1.2 Score=24.99 Aligned_cols=106 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHC-CCCCEEEEEC
Q ss_conf 5998999999999998898999---999979999999718998999983655--999799999999858-9985999943
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMP--EMDGIELARRATELD-PDLKVMFITG 82 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~~~dlii~D~~mP--~~dG~el~~~ir~~~-~~~pii~~s~ 82 (122)
|-...-.++++..|+..||+|. ...+.++..+...++..|+|.+-.-.- ....-++.+.+++.. .++++++ =|
T Consensus 10 D~Hd~G~~iva~~l~~~GfeVi~lG~~~~~e~~~~~a~e~~ad~i~vSsl~g~~~~~~~~l~~~L~e~G~~di~vvv-GG 88 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLYV-GG 88 (128)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEEEE-CC
T ss_conf 65378899999999978972984798899999999998739999998232025624899999999967999998997-89
Q ss_pred C------CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 7------97899999997699869976979899999999
Q gi|254780312|r 83 F------AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 83 ~------~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
. ...+........|++......-++.+..+.++
T Consensus 89 ~i~i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~~ 127 (128)
T cd02072 89 NLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred CCCCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 867783104899999996696857499879999999985
No 96
>PRK10060 RNase II stability modulator; Provisional
Probab=90.92 E-value=1.5 Score=24.37 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=81.3
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHHCCCCCE-EE
Q ss_conf 759989999999999988989999--9997999999971899899998365-----599979999999985899859-99
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVM-----PEMDGIELARRATELDPDLKV-MF 79 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~m-----P~~dG~el~~~ir~~~~~~pi-i~ 79 (122)
++|.......+. .|...|+++.. +.+|...+..++.-|+|.+=+|-.+ .+.....+++.|-.....+-+ ++
T Consensus 537 ~~d~~~~~~~l~-~Lr~lGv~iALDDFGTGySSLsyL~~lPvd~lKIDrsFV~~i~~d~~~~aIV~aIi~LA~~Lgl~vV 615 (663)
T PRK10060 537 IENEELALSVIQ-QFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVI 615 (663)
T ss_pred HCCHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 239999999999-9997899899989999733699984289998999989971604892279999999999998699899
Q ss_pred EECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHHH
Q ss_conf 9437978999999976998----699769798999999999960
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i~~~l~ 119 (122)
.-|....+......+.|++ .|+.||...+++..=+++--+
T Consensus 616 AEGVEt~eQ~~~L~~lGcd~~QGy~fsrPmPa~ef~~wL~~~q~ 659 (663)
T PRK10060 616 AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKRYQK 659 (663)
T ss_pred EECCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHH
T ss_conf 91386499999999759999826753608999999999997442
No 97
>PRK06483 short chain dehydrogenase; Provisional
Probab=90.72 E-value=1.5 Score=24.26 Aligned_cols=80 Identities=19% Similarity=0.251 Sum_probs=57.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf 98669997599899999999999889899999-997999999971899899998365599979-9999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii 78 (122)
|+|+|||.--...+-..+.+.|.+.|++|..+ .+..++.+.+++.....+-.|+. +.+.. ++++.+.+....+-++
T Consensus 1 M~ktVlVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~l~~~~~~~~~~Dv~--~~~~v~~~~~~~~~~~g~id~l 78 (236)
T PRK06483 1 MSAPILITGAGQRIGLALAKHLLAQGQPVIVSYRSHYPAIDELRQAGATCIQADFS--TNAGIMAFIDELKQHTDGLRAI 78 (236)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCEEEEECCC--CHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99879997899889999999999889989999598479999998569989992279--9999999999999983997599
Q ss_pred EEEC
Q ss_conf 9943
Q gi|254780312|r 79 FITG 82 (122)
Q Consensus 79 ~~s~ 82 (122)
+..+
T Consensus 79 VnNA 82 (236)
T PRK06483 79 IHNA 82 (236)
T ss_pred EECC
T ss_conf 9777
No 98
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=90.40 E-value=0.75 Score=26.11 Aligned_cols=78 Identities=19% Similarity=0.276 Sum_probs=54.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC--CCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 9997599899999999999889899999997999999971899899998365--5999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
||+||...+.-..+.++|+..|.++....+-+-.++.+.+..||.|++-=.= |...|. ..+.++....++||+ ++-
T Consensus 2 ILlIDn~DsFT~ni~~~l~~~g~~~~v~~~d~~~~~~i~~~~pd~IiLSpGPg~p~~~~~-~~~~~~~~~~~iPILGICl 80 (195)
T PRK07649 2 ILMIDNYDSFTYNLVQYLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAGI-SMEVIRYFAGKIPIFGVCL 80 (195)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEECH
T ss_conf 999958980799999999978997999889968999998419898998899999578476-1467997528997843029
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (195)
T PRK07649 81 GH 82 (195)
T ss_pred HH
T ss_conf 99
No 99
>PRK05670 anthranilate synthase component II; Provisional
Probab=90.31 E-value=0.57 Score=26.84 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=52.3
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 999759989999999999988989999999799999997189989999836--55999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
|||||...+.-..+.+.|++.|+.++...+-+-..+.+....||.|++-=. =|.-.| ...+.+++...++|++ ++-
T Consensus 2 iLiiD~~dsfT~nI~~~lr~~g~~v~V~~~d~~~~~~i~~~~pdgiiLS~GPg~P~~~~-~~~~~i~~~~~~iPiLGICl 80 (192)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALAPDAIVLSPGPGTPAEAG-ISLELIREFAGKVPILGVCL 80 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCC-CHHHHHHHHCCCCCEEEEEH
T ss_conf 99996898689999999986899699998998999999850989899999999936605-54999997346997899847
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (192)
T PRK05670 81 GH 82 (192)
T ss_pred HH
T ss_conf 78
No 100
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=90.15 E-value=1.7 Score=23.96 Aligned_cols=107 Identities=16% Similarity=0.178 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCC-CEEEE
Q ss_conf 5998999999999998898999--999979999999718998999983655-----999799999999858998-59999
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDL-KVMFI 80 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~-pii~~ 80 (122)
++.+ ....+-..|+..|+++. -+.+|...+..+.+.+||.|=+|-.+= +-.+..+++.|-+..... .-++.
T Consensus 133 ~~~~-~~~~~l~~Lr~~G~~ialDDFGtG~ssl~~L~~l~~d~iKID~~fv~~i~~~~~~~~iv~~iv~la~~l~~~vva 211 (256)
T COG2200 133 DDLD-TALALLRQLRELGVRIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA 211 (256)
T ss_pred CCHH-HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 4989-999999999977998999789997165999985799749996999986303831179999999999974998999
Q ss_pred ECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHH
Q ss_conf 437978999999976998----699769798999999999
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i~~ 116 (122)
-|....+......+.|++ .|+.||...+++...+++
T Consensus 212 EGVEt~~ql~~L~~~G~~~~QGy~f~~P~~~~~~~~~~~~ 251 (256)
T COG2200 212 EGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLSS 251 (256)
T ss_pred EECCCHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 7069699999999779998854741788986899999752
No 101
>CHL00101 trpG anthranilate synthase component 2
Probab=90.05 E-value=0.8 Score=25.94 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=52.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 999759989999999999988989999999799999997189989999836--55999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
|||||.-.+.-..+.+.|++.|+.+....+-.-.++.+....||.|++-=. -|.-.|. ....++.....+||+ ++-
T Consensus 2 ILiiD~~dsft~~i~r~lrelg~~~~v~~~d~~~~~~i~~~~p~gIILS~GPg~p~~~~~-~~~~~~~~~~~iPILGICl 80 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDLLVCRNDEIDLSKIKNLNPRHIIISPGPGHPRDSGI-SLDVISSYAPTIPILGVCL 80 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHHCCCCEEEECH
T ss_conf 999978880899999999868998999869989999997079798999799999578576-1689999714998789739
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (190)
T CHL00101 81 GH 82 (190)
T ss_pred HH
T ss_conf 88
No 102
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.56 E-value=1.9 Score=23.68 Aligned_cols=109 Identities=13% Similarity=0.177 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH----HHHHHCCCCCEEEEE
Q ss_conf 5998999999999998898999---999979999999718998999983655999799999----999858998599994
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR----RATELDPDLKVMFIT 81 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~----~ir~~~~~~pii~~s 81 (122)
|-...=.+++...|+..||+|+ ...+++|+.....++..|+|.+-.. .-...+++. .+|+...+--.++.-
T Consensus 23 DgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~dv~vIgvSsl--~g~h~~l~~~lve~lre~G~~~i~v~~G 100 (143)
T COG2185 23 DGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEEDVDVIGVSSL--DGGHLTLVPGLVEALREAGVEDILVVVG 100 (143)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEEEC--CCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 54431319999999857937981587589999999998647988999734--4047899999999999819755488656
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 37978999999976998699769798999999999960
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
|.-..+......+.|++.+..--....+....+...+.
T Consensus 101 Gvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 101 GVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred CCCCCHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 86681367999981866546899989999999999987
No 103
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=89.34 E-value=0.86 Score=25.75 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=54.6
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC--CCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 9997599899999999999889899999997999999971899899998365--5999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
||+||...+.-..+.++|++.|.++....+-+-.++.+....||.|++-=.= |.-.|. ....++.....+||+ ++-
T Consensus 2 ILiIDn~DsFT~ni~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~IvlSpGPg~P~~~~~-~~~~i~~~~~~iPiLGICl 80 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAGI-SLDVIRHYAGRLPILGVCL 80 (187)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEECH
T ss_conf 999968981899999999877997999938989999998429897999999999589084-0468997538998899879
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (187)
T PRK08007 81 GH 82 (187)
T ss_pred HH
T ss_conf 99
No 104
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=89.05 E-value=2.1 Score=23.46 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=64.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889--899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.++++.++|+.+.+.+.+.-+.|| |++....+...-+..+++ . -+++-+.|=+.+=-+....|++...+-|++++
T Consensus 32 ~~i~l~~~D~~~~etv~~V~~rwGG~F~~e~~~~~~~~ir~~k~--~-G~vVHLTMYG~~i~~~~~~Ir~~~~~~~ilvV 108 (175)
T PRK03958 32 DKILFASEDEHVKESVEDIVERWGGPFKVEVTKSWKKYIREFKD--G-GIVVHLTMYGENINDVMDEIREAKTCKPLLII 108 (175)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCC--C-CEEEEEECCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 76787688766899999999861896699976897999863025--8-88999836888667877676530578878999
Q ss_pred ECCCCH
Q ss_conf 437978
Q gi|254780312|r 81 TGFAAV 86 (122)
Q Consensus 81 s~~~~~ 86 (122)
.|-...
T Consensus 109 VGaeKV 114 (175)
T PRK03958 109 VGAEKV 114 (175)
T ss_pred ECCCCC
T ss_conf 678869
No 105
>PRK00758 GMP synthase subunit A; Validated
Probab=88.72 E-value=1.2 Score=24.83 Aligned_cols=75 Identities=15% Similarity=0.238 Sum_probs=49.9
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEE-EEE
Q ss_conf 699975998999999999998898999999979999999718998999983655999799-999999858998599-994
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDPDLKVM-FIT 81 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii-~~s 81 (122)
|||+||.-...-..+.+.|++.|+.++...+-..+ +.+.+ .||-|++-=. |+.+-.. ..+.+++ .++|++ ++-
T Consensus 1 kIlviD~~dsft~ni~~~l~~~g~~v~v~~~~~~~-~~i~~-~~dgiilS~G-P~~~~~~~~~~~i~~--~~iPiLGICl 75 (184)
T PRK00758 1 KILVINNGGQYNHLIHRTLRYLGVDAKIIPNTTPL-EEIKA-EPDGIILSGG-PEIERAGNCEEYLLE--LDVPILGICL 75 (184)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHH-CCCEEEECCC-CCCCCCCCHHHHHHH--CCCCEEEEEH
T ss_conf 99999898638999999999789928999598989-99963-8998998899-983332206999986--5998899717
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 76 G~ 77 (184)
T PRK00758 76 GH 77 (184)
T ss_pred HH
T ss_conf 76
No 106
>PRK11359 cAMP phosphodiesterase; Provisional
Probab=88.33 E-value=2.3 Score=23.16 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=78.3
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCE-EEEE
Q ss_conf 9989999999999988989999--99979999999718998999983655-----99979999999985899859-9994
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKV-MFIT 81 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pi-i~~s 81 (122)
+.+.... .-..|...|+.+.. +.+|...+..+++-++|.|=+|-.+= +-+...+++.|-.....+.+ ++.-
T Consensus 676 ~~~~~~~-~l~~lr~~G~~ialDDFGtGyssl~~L~~lp~d~iKiD~~fv~~~~~~~~~~~iv~~ii~la~~l~~~vvAE 754 (799)
T PRK11359 676 HDTEIFK-RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVVAE 754 (799)
T ss_pred CHHHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 9999999-999999789989998999986789999738998999897996174689538999999999999879989992
Q ss_pred CCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHHHH
Q ss_conf 37978999999976998----69976979899999999996
Q gi|254780312|r 82 GFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i~~~l 118 (122)
|....+...-..+.|++ .|+.||...++|..=+....
T Consensus 755 GVEt~~q~~~L~~~g~d~~QGy~~~kPlp~~~~~~wl~~~~ 795 (799)
T PRK11359 755 GVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVL 795 (799)
T ss_pred CCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCC
T ss_conf 79809999999975999896272262899999999984189
No 107
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=88.30 E-value=2.3 Score=23.15 Aligned_cols=96 Identities=10% Similarity=0.122 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEEC-CCCCHHH-HHHHHHHHCCCCCEEEEECC
Q ss_conf 59989999999999988989999---9997999999971899899998365-5999799-99999985899859999437
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVM-PEMDGIE-LARRATELDPDLKVMFITGF 83 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~m-P~~dG~e-l~~~ir~~~~~~pii~~s~~ 83 (122)
|-+..=.+++..+|+..||+|.- --..++.++.++++.||+|-+-..| +.|.... +.+.+++...+.||++==+-
T Consensus 99 D~HdiGkniv~~~l~~~Gf~V~dLG~dv~~e~~v~~~~~~~~divglSallTtTm~~mk~vi~~l~~~g~~vkv~vGGa~ 178 (213)
T cd02069 99 DVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEHKADIIGLSGLLVPSLDEMVEVAEEMNRRGIKIPLLIGGAA 178 (213)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 63412189999999978966885058998999999999749999998323030499999999999974998179971632
Q ss_pred CCHHHHHH--HHH-CCCCEEEECC
Q ss_conf 97899999--997-6998699769
Q gi|254780312|r 84 AAVALNPD--SNA-PKNAKVLSKP 104 (122)
Q Consensus 84 ~~~~~~~~--~~~-~g~~~~l~KP 104 (122)
-.++...+ +-. .|++.|-.-.
T Consensus 179 vt~~fa~~~~~~~y~Gad~y~~dA 202 (213)
T cd02069 179 TSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred CCHHHHHHHHHHCCCCCCEEECCH
T ss_conf 788899876410367980784399
No 108
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=88.20 E-value=2.4 Score=23.11 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=64.9
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699975998----9999999999988989999-------9997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
++|.++.++. .....+...++..|.++.. ..|-...+..+++..+|+|++- ...-++..+++++++.
T Consensus 136 ~~vai~~~~~~~g~~~~~~~~~~l~~~g~~vv~~~~~~~~~~d~~~~i~~l~~~~~d~v~~~--~~~~~~~~~~~~~~~~ 213 (334)
T cd06342 136 KKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFG--GYYPEAGPLVRQMRQL 213 (334)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHC
T ss_conf 68999915655445579999999997498399999658876665789999986599999992--6755899999999976
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8998599994379789999999769986997697
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
..+.+++..++.........+.......|..-|+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 247 (334)
T cd06342 214 GLKAPFMGGDGLCDPEFIKIAGDAAEGTYATFPG 247 (334)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEC
T ss_conf 9997599967778789998645754581899404
No 109
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=88.19 E-value=1.1 Score=25.06 Aligned_cols=78 Identities=17% Similarity=0.186 Sum_probs=54.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 999759989999999999988989999999799999997189989999836--55999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
||+||...+.-..+.+.|+..|.+|....+-+-.++.+....||.|++-=. -|.-.| .....++.....+||+ ++-
T Consensus 2 ILiiDn~DsFT~nl~~~l~~~g~~v~V~~~d~~~~~~i~~~~p~~ivLSpGPG~P~~~~-~~~~~i~~~~~~iPILGICl 80 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHVVISPGPCTPNEAG-ISLAVIRHFADKLPILGVCL 80 (191)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCEEEECCCCCCHHHHC-CHHHHHHHHCCCCCEEEEHH
T ss_conf 99996999769999999987799599986998899999853999699999998967907-30689997446997886168
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (191)
T PRK06774 81 GH 82 (191)
T ss_pred HH
T ss_conf 79
No 110
>PRK13117 consensus
Probab=88.18 E-value=2.1 Score=23.47 Aligned_cols=44 Identities=11% Similarity=0.067 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999999985899859999437------9789999999769986997697
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
|++++++|+..+++|+++|+-+ +-.....++.+.|++++|.--.
T Consensus 82 ~~~~~~ir~~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDL 131 (268)
T PRK13117 82 FELLAKIRAKYPTIPIGLLLYANLVFANGIDNFYARCAEAGVDSVLIADV 131 (268)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 99998850047898779973262898717999999999769877985799
No 111
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=88.03 E-value=0.87 Score=25.71 Aligned_cols=78 Identities=22% Similarity=0.267 Sum_probs=50.7
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 999759989999999999988989999999799999997189989999836--55999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
|||||-..+.-..+.+.+++.|+.++....-....+.+....||.|++-=. =|..++.. ...++.....+|++ ++-
T Consensus 1 iLiiD~~dsft~~i~r~lr~~g~~~~v~p~~~~~~~~~~~~~~~giiLS~GPg~p~~~~~~-~~~~~~l~~~iPiLGIC~ 79 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAGIS-LEIIRALAGKVPILGVCL 79 (184)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCCH-HHHHHHHHCCCCEEEECH
T ss_conf 8999379817999999998679959999899999999973297999999999892561460-999999846998999809
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 80 G~ 81 (184)
T cd01743 80 GH 81 (184)
T ss_pred HH
T ss_conf 99
No 112
>PRK13138 consensus
Probab=87.76 E-value=2.1 Score=23.42 Aligned_cols=54 Identities=15% Similarity=0.421 Sum_probs=37.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEEC--CCCH---HHHHHHHH
Q ss_conf 9999999985899859999437------97899999997699869976--9798---99999999
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSK--PFHL---RDLVNEVN 115 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~K--P~~~---~~L~~~i~ 115 (122)
|++++++|+.++++|+++||-+ +-.....++.+.|++++|.- |++. +++...++
T Consensus 78 ~~~~~~ir~~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~e~~E~~~~~~~~~ 142 (264)
T PRK13138 78 LEITAEIHKLHPEIPLVYLTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPFDTPEAEEFFSQLE 142 (264)
T ss_pred HHHHHHHCCCCCCCCEEEEEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHH
T ss_conf 44677603358988889752123898848999999998769775853689865033599999999
No 113
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=87.75 E-value=2.5 Score=22.95 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=68.4
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---9999999999988989999-------9997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|++ .....+...++..|+++.. ..|-...+..+....||.|++-. ..-++..+++++++.
T Consensus 136 ~~vaiv~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~i~~l~~~~pd~v~~~~--~~~~~~~~~~~~~~~ 213 (298)
T cd06268 136 KKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAAGPDAVFLAG--YGGDAALFLKQAREA 213 (298)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHC
T ss_conf 589997787346799999999989974998999996487657779999999976999999917--626789999999982
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8998599994379789999999769986997697
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
..+.+++..++.................+..-|+
T Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 247 (298)
T cd06268 214 GLKVPIVGGDGAAAPALLELAGDAAEGVLGTTPY 247 (298)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 9997399956777789999788975887999856
No 114
>PRK07024 short chain dehydrogenase; Provisional
Probab=87.70 E-value=2.5 Score=22.93 Aligned_cols=78 Identities=13% Similarity=0.174 Sum_probs=53.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC----CCCEEEEEEECCCCCHHH-HHHHHHHHCCCC
Q ss_conf 986699975998999999999998898999999979999999718----998999983655999799-999999858998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE----PFSLLLTDIVMPEMDGIE-LARRATELDPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~----~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~ 75 (122)
|.+||||.--...+-..++..|.+.|++|..+..-++.++.+.++ ...++-+|+. +.+..+ +.+++.+....+
T Consensus 1 M~~~VlITGassGIG~a~A~~la~~G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~--d~~~~~~~~~~~~~~~g~i 78 (256)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKARVSVYAADVR--DADALAAAAADFIAAHGCP 78 (256)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHHHHHHCCC
T ss_conf 99989998460299999999999889989999898899999999767997699981179--9999999999999983998
Q ss_pred CEEEE
Q ss_conf 59999
Q gi|254780312|r 76 KVMFI 80 (122)
Q Consensus 76 pii~~ 80 (122)
-+++.
T Consensus 79 Dilin 83 (256)
T PRK07024 79 DVVIA 83 (256)
T ss_pred CEEEE
T ss_conf 79998
No 115
>PRK09776 putative sensor protein; Provisional
Probab=87.68 E-value=2.6 Score=22.92 Aligned_cols=107 Identities=17% Similarity=0.133 Sum_probs=78.5
Q ss_pred EECCCHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEEC----C-CCCHHHHHHHHHHHCCCCCE-E
Q ss_conf 9759989999999999988989999--9997999999971899899998365----5-99979999999985899859-9
Q gi|254780312|r 7 LAEDDDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVM----P-EMDGIELARRATELDPDLKV-M 78 (122)
Q Consensus 7 iVDD~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~m----P-~~dG~el~~~ir~~~~~~pi-i 78 (122)
+++|.....+.+. .|++.|+++.. +.+|-..+..+++.|+|.+=.|-.. + +.+...+++.|-.....+.. +
T Consensus 993 l~~~~~~~~~~l~-~Lr~lGi~ialDDFGTGySSL~yLk~lPvD~LKID~sFV~~l~~~~~d~~iV~~Ii~la~~Lgl~v 1071 (1116)
T PRK09776 993 LLNHAEAASRLVQ-KLRLAGCRVVLDDFGRGLSSFNYLKAFMADYLKIDGELCANLQGNLMDEMLVSIINGIAQRLGMKT 1071 (1116)
T ss_pred HHCCHHHHHHHHH-HHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 3349999999999-999789999998997867899999728999899898997175799548999999999999878989
Q ss_pred EEECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHH
Q ss_conf 99437978999999976998----6997697989999999
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEV 114 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i 114 (122)
+--|....+......+.|++ .|+.||...+++++.-
T Consensus 1072 VAEGVEt~~ql~~L~~lGcd~~QGY~fsrP~Plee~l~~~ 1111 (1116)
T PRK09776 1072 IAGPVELPLTLDTLSGIGVDLAQGYVIGRPQPLDLLLNSS 1111 (1116)
T ss_pred EECCCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHCCC
T ss_conf 9868880999999997799988755006478899984455
No 116
>TIGR02855 spore_yabG sporulation peptidase YabG; InterPro: IPR008764 Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of Bacillus subtilis ..
Probab=87.51 E-value=2.6 Score=22.86 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=66.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEE---EEECCCCCHH----------
Q ss_conf 986699975998999999999998898999-----9999799999997189989999---8365599979----------
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVV-----SCNNGASAYDKVREEPFSLLLT---DIVMPEMDGI---------- 62 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~-----~a~~g~~al~~~~~~~~dlii~---D~~mP~~dG~---------- 62 (122)
|--|||.+|-|+...+..-..-++.|..|. +.+-+++-..++...+||++++ |.-.-...+.
T Consensus 112 ~PGrVLH~DGD~~YL~~C~~~Y~~~gv~V~G~~~~E~emPe~v~~L~~~~~PDIlViTGHDa~~K~~~~~~DL~aYRhSk 191 (292)
T TIGR02855 112 MPGRVLHIDGDPEYLRKCLKLYKKLGVPVVGIHCKEKEMPEKVLDLIEEVRPDILVITGHDAYSKNKGNYGDLNAYRHSK 191 (292)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCEEECCCCHHHHHHCCCCH
T ss_conf 88647742288889999999886619727999984121808899999730997899946663021678711364236656
Q ss_pred ---HHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCCCCEEEECC
Q ss_conf ---9999999858998-59999437978999999976998699769
Q gi|254780312|r 63 ---ELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKP 104 (122)
Q Consensus 63 ---el~~~ir~~~~~~-pii~~s~~~~~~~~~~~~~~g~~~~l~KP 104 (122)
+..+.+|+..|.. -.|++-|- =+.--+.-+++||+ |=+=|
T Consensus 192 yFv~~V~~aR~~~P~lD~LVIFAGA-CQShfE~li~AGAN-FASSP 235 (292)
T TIGR02855 192 YFVETVREARKYVPSLDQLVIFAGA-CQSHFESLIRAGAN-FASSP 235 (292)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHCC-CHHHHHHHHHHCCC-CCCCC
T ss_conf 8999999986317875323433212-14457999974565-45771
No 117
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=87.46 E-value=1.1 Score=25.02 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=50.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC--CCCCHHHHHHHHHHHCCCCCEE-EEE
Q ss_conf 9997599899999999999889899999997999999971899899998365--5999799999999858998599-994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATELDPDLKVM-FIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~pii-~~s 81 (122)
||+||...+.-..+.+.|++.|.+|....+-+--++.+....|+.|++-=.= |.-.|. ....++....++||+ ++-
T Consensus 2 iLiiDn~DsfT~ni~~~l~~lg~~v~vv~~d~~~~~~i~~~~p~~IilS~GPg~p~~~~~-~~~~~~~~~~~iPILGICl 80 (192)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAEVKVVRNDEIDIAGIEALNPSHLVISPGPCTPNEAGI-SLQAIEHFAGKLPILGVCL 80 (192)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCEEEECCCCCCHHHCCC-CHHHHHHHCCCCCEEEECH
T ss_conf 999979997799999999877992899969989999998429795999899999678286-1466997357999899879
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|+
T Consensus 81 G~ 82 (192)
T PRK08857 81 GH 82 (192)
T ss_pred HH
T ss_conf 99
No 118
>PRK10551 hypothetical protein; Provisional
Probab=87.38 E-value=2.7 Score=22.81 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=76.7
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCE-EE
Q ss_conf 75998999999999998898999--999979999999718998999983655-----99979999999985899859-99
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKV-MF 79 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pi-i~ 79 (122)
+++.. ....+ ..|+..|+.+. -+.+|...+..+++-++|.+=+|-.+- +.....+++.|-+......+ ++
T Consensus 394 ~~~~~-~~~~l-~~Lr~~Gv~ialDDFGtGySSL~~L~~lp~D~lKIDrsfv~~i~~~~~~~~il~~Ii~la~~l~l~vV 471 (518)
T PRK10551 394 LQEEE-ALKLF-AWLHSQGIEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTETVTSPVLDAVLTLAKRLNMLTV 471 (518)
T ss_pred CCHHH-HHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 49099-99999-99997699499978999703589997399988998899985204690468999999999998799699
Q ss_pred EECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHHHHH
Q ss_conf 9437978999999976998----699769798999999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~i~~ 116 (122)
.-|....+......+.|++ .|..||...+++.+=+++
T Consensus 472 AEGVEt~eq~~~L~~lG~~~~QGy~~srPmp~~~f~~wl~~ 512 (518)
T PRK10551 472 AEGVETPEQARWLREHGVNFLQGYWISRPLPLDDFVKWLKK 512 (518)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHCC
T ss_conf 97688699999999769998856600568999999999747
No 119
>KOG1562 consensus
Probab=87.22 E-value=2.7 Score=22.76 Aligned_cols=64 Identities=28% Similarity=0.406 Sum_probs=51.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHC--CCE---EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 6999759989999999999988--989---99-9999799999997189989999836559997999999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKA--GYE---VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~--G~~---v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ 67 (122)
.|+++|-|..+.+.=..++... ||+ |. .-.||...++.+.++++|+|++|..=|.+.+-.+..+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii~dssdpvgpa~~lf~~ 216 (337)
T KOG1562 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVIITDSSDPVGPACALFQK 216 (337)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 0675433678999999873887536789714899556899998703697418997167767558898888
No 120
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.13 E-value=2.8 Score=22.73 Aligned_cols=107 Identities=13% Similarity=0.148 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEECC-CCCH-HHHHHHHHHHCCCCCEEEEECC
Q ss_conf 59989999999999988989999---99979999999718998999983655-9997-9999999985899859999437
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVMP-EMDG-IELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~mP-~~dG-~el~~~ir~~~~~~pii~~s~~ 83 (122)
|-...=.++++..|+..||+|.- ..++++-.+...++..|+|-+-.-+- .+.- -++.+.+++...+-..++.-|.
T Consensus 10 DgHd~G~~iva~~l~d~GfeVi~lG~~~s~eeiv~~A~~e~ad~IglSsL~g~h~~~~~~l~~~L~e~G~~di~v~vGG~ 89 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGI 89 (122)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 62287799999999978976996799889999999999739989999646554478999999999976999846999456
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 97899999997699869976979899999999
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
--.+......+.|++.....--+.++..+.++
T Consensus 90 Ip~~d~~~l~~~Gv~~vf~pgt~~~~iv~~i~ 121 (122)
T cd02071 90 IPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
T ss_conf 49899999997799889895889999999975
No 121
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=86.71 E-value=2.9 Score=22.59 Aligned_cols=101 Identities=16% Similarity=0.195 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCEEEEECCHH----HHH-----HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999998898999999979----999-----999718998999983655999799999999858998599994379
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNGA----SAY-----DKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g~----~al-----~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~ 84 (122)
+-.++-..-.+.+.+|..+.+|. ++. +.+.+..||+|+.---=|...|-.-++++.+ ..+.|.|+++.-+
T Consensus 19 ~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~-~s~~PaiiigDaP 97 (277)
T COG1927 19 VDLLLDERADREDIEVRVVGSGAKMDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILS-DSDVPAIIIGDAP 97 (277)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHH-HCCCCEEEECCCC
T ss_conf 999877541457965999616665586888887799998518988999579989999468999874-3599779966886
Q ss_pred CHHHHHHHHHCCCCEEEECCCC----HHHHHHHHH
Q ss_conf 7899999997699869976979----899999999
Q gi|254780312|r 85 AVALNPDSNAPKNAKVLSKPFH----LRDLVNEVN 115 (122)
Q Consensus 85 ~~~~~~~~~~~g~~~~l~KP~~----~~~L~~~i~ 115 (122)
.........+.|..++|.|+-. ..++++-+.
T Consensus 98 g~~vkdeleeqGlGYIivk~DpmiGArREFLDPvE 132 (277)
T COG1927 98 GLKVKDELEEQGLGYIIVKADPMIGARREFLDPVE 132 (277)
T ss_pred CCHHHHHHHHCCCEEEEECCCCCCCHHHHHCCHHH
T ss_conf 31367899865870799627754432343048898
No 122
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=86.34 E-value=2.6 Score=22.87 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCCC---CHH-------------------HHHHHHHHH-CCCCCEEEEE--CCCCHHH
Q ss_conf 97999999971899899998365599---979-------------------999999985-8998599994--3797899
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPEM---DGI-------------------ELARRATEL-DPDLKVMFIT--GFAAVAL 88 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~~---dG~-------------------el~~~ir~~-~~~~pii~~s--~~~~~~~ 88 (122)
++.||++++++. ++++|+|++-|.. .|. +++.++.+. .++.||+++- |......
T Consensus 2 tp~eA~e~L~~~-~~~~lIDVRt~~E~~~~G~ipga~~I~~~~~~~~~~~~~f~~~l~~~~~~d~~ivv~C~sG~RS~~A 80 (117)
T cd01522 2 TPAEAWALLQAD-PQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDMEINPNFLAELEEKVGKDRPVLLLCRSGNRSIAA 80 (117)
T ss_pred CHHHHHHHHHHC-CCEEEEECCCHHHHHHHCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 989999999849-9839998998899986298888511203431122458127899997459998699988998159999
Q ss_pred HHHHHHCCCCE
Q ss_conf 99999769986
Q gi|254780312|r 89 NPDSNAPKNAK 99 (122)
Q Consensus 89 ~~~~~~~g~~~ 99 (122)
.....+.|...
T Consensus 81 a~~L~~~Gf~n 91 (117)
T cd01522 81 AEAAAQAGFTN 91 (117)
T ss_pred HHHHHHCCCCC
T ss_conf 99999859877
No 123
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=86.00 E-value=0.79 Score=25.97 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=42.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9866999759989999999999988989-999-99979999999718998999983
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVS-CNNGASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~-v~~-a~~g~~al~~~~~~~~dlii~D~ 54 (122)
|-+||.|||=|+-..+++.+.-++.||. +.. +-|-..++----.+.||++++|=
T Consensus 174 mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 174 MPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHCCCCHHHEEEHHCCCCHHHHHHHCCEEECCC
T ss_conf 87337998315899999999999848331554030510458398885077643596
No 124
>pfam05582 Peptidase_U57 YabG peptidase U57. YabG is a protease involved in the proteolysis and maturation of SpoIVA and YrbA proteins, conserved with the cortex and/or coat assembly by Bacillus subtilis.
Probab=85.85 E-value=3.2 Score=22.32 Aligned_cols=96 Identities=11% Similarity=0.163 Sum_probs=59.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEE-----EECCHHHHHHHHHHCCCCEEEE---EEECCCC------CHH----H
Q ss_conf 86699975998999999999998898999-----9999799999997189989999---8365599------979----9
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVV-----SCNNGASAYDKVREEPFSLLLT---DIVMPEM------DGI----E 63 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~-----~a~~g~~al~~~~~~~~dlii~---D~~mP~~------dG~----e 63 (122)
--|||.+|.|+...+..-..-++.|..+. .-.-++.-.+++.+..||++++ |--..+. +.+ -
T Consensus 105 PGkVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~i~E~eqP~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dL~~YrnSky 184 (287)
T pfam05582 105 PGRVLHLDGDPEYLDKCLKVYKQLGLPAVGVHISEKEQPEKIESLLEKYRPDILVITGHDAYLKNKGDYGDLNNYRNSKY 184 (287)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHCHHHHHHHHHHHCCCEEEEECCHHHHCCCCCHHHHHHHHHHHH
T ss_conf 86288754989999999999997198458998360125299999998728998999584576337777346666541099
Q ss_pred HHHHHH---HHCCCCC-EEEEECCCCHHHHHHHHHCCCC
Q ss_conf 999999---8589985-9999437978999999976998
Q gi|254780312|r 64 LARRAT---ELDPDLK-VMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 64 l~~~ir---~~~~~~p-ii~~s~~~~~~~~~~~~~~g~~ 98 (122)
+.+.+| +..|+.- .+++-| .=+.-.+..++.|++
T Consensus 185 FVeaVk~AR~y~p~~D~LVIFAG-ACQS~yEall~AGAN 222 (287)
T pfam05582 185 FVETVKEARKYEPSLDQLVIFAG-ACQSHYEAIIEAGAN 222 (287)
T ss_pred HHHHHHHHHHCCCCCCCEEEECC-HHHHHHHHHHHCCCC
T ss_conf 99999999824899663899821-447889999972766
No 125
>PRK13119 consensus
Probab=85.81 E-value=2.9 Score=22.56 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC--CCCH
Q ss_conf 99999999858998599994379------7899999997699869976--9798
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK--PFHL 107 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K--P~~~ 107 (122)
+++++++|+.++++|+++||-++ -.....++.+.|+++.|.- |+..
T Consensus 80 ~~~~~~ir~~~~~~pivlMtY~N~i~~yG~e~F~~~~~~~GvdGvIipDLP~ee 133 (261)
T PRK13119 80 LDVVRKFRETDTQTPVVLMGYLNPVHKMGYREFAQEAAKAGVDGVLTVDSPVET 133 (261)
T ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 999998651489989899840378988629999999997598579836899788
No 126
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=85.77 E-value=3.2 Score=22.29 Aligned_cols=87 Identities=18% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHCCCEEEEE--CC-HHHHHHHHHHCCCCEEEEEEECC-CCCHHH-HHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9999999999889899999--99-79999999718998999983655-999799-9999998589985999943797899
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSC--NN-GASAYDKVREEPFSLLLTDIVMP-EMDGIE-LARRATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a--~~-g~~al~~~~~~~~dlii~D~~mP-~~dG~e-l~~~ir~~~~~~pii~~s~~~~~~~ 88 (122)
=-+++..+|+..||+|.-- .. .++..+...+..||+|-+-..|- .|-+.. +.+.+++..-.-|++++.|- ..-.
T Consensus 120 Gk~iV~~ml~~aGfevidLG~dvP~e~fve~a~e~k~d~v~~SalMTttm~~~~~viE~L~eeGiRd~v~v~vGG-Apvt 198 (227)
T COG5012 120 GKNIVATMLEAAGFEVIDLGRDVPVEEFVEKAKELKPDLVSMSALMTTTMIGMKDVIELLKEEGIRDKVIVMVGG-APVT 198 (227)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC-CCCC
T ss_conf 899999999837957874389998799999999728756640687788799799999999976885474885268-6246
Q ss_pred HHHHHHCCCCEEE
Q ss_conf 9999976998699
Q gi|254780312|r 89 NPDSNAPKNAKVL 101 (122)
Q Consensus 89 ~~~~~~~g~~~~l 101 (122)
..-+.+.|++.|-
T Consensus 199 q~~a~~iGAD~~~ 211 (227)
T COG5012 199 QDWADKIGADAYA 211 (227)
T ss_pred HHHHHHHCCCCCC
T ss_conf 8999971877567
No 127
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=85.64 E-value=3.3 Score=22.26 Aligned_cols=87 Identities=11% Similarity=0.145 Sum_probs=62.0
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699975998----9999999999988989999-------9997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+|+-++.+|. .....+...+++.|.++.. ..|-...+..+++..||+|++- ...-++..++++.++.
T Consensus 133 k~vavi~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~ 210 (333)
T cd06358 133 RRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLST--LVGQDAVAFNRQFAAA 210 (333)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEC--CCCCHHHHHHHHHHHC
T ss_conf 78999926834658899999999997498599998279999789999999997498999993--7772399999999976
Q ss_pred CCCCCEEEEECCCCHHHHHH
Q ss_conf 89985999943797899999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~ 91 (122)
.-..+++..++.........
T Consensus 211 G~~~~~~~~~~~~~~~~~~~ 230 (333)
T cd06358 211 GLRDRILRLSPLMDENMLLA 230 (333)
T ss_pred CCCCCEEEEECCCCHHHHHH
T ss_conf 99987466645678799986
No 128
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=85.49 E-value=3 Score=22.51 Aligned_cols=54 Identities=22% Similarity=0.339 Sum_probs=45.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH------HHCCCCEEEEEEEC
Q ss_conf 86699975998999999999998898999999979999999------71899899998365
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV------REEPFSLLLTDIVM 56 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~------~~~~~dlii~D~~m 56 (122)
+.||||.-=-.-+.+=|+++|.++|.+|.=-.|--++++.. +.+.|||++ .+||
T Consensus 447 ~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLV-GINL 506 (667)
T TIGR00631 447 NERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLV-GINL 506 (667)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEE-ECCH
T ss_conf 89489982016778899999705883798714557899999999984478840886-0002
No 129
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=85.25 E-value=3.4 Score=22.14 Aligned_cols=97 Identities=14% Similarity=0.149 Sum_probs=65.5
Q ss_pred HHHHHHHCCCEEEEECCHH--------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9999998898999999979--------99999971899899998365599979999999985899859999437978999
Q gi|254780312|r 18 LIKALGKAGYEVVSCNNGA--------SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 18 l~~~L~~~G~~v~~a~~g~--------~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
+-..-.+.+..|..+.+|. +....+.++.||+++.=--=|...|-.-++++-+ ..++|.|++|.-......
T Consensus 23 LDErAdRedI~vrv~gsGaKm~pe~~~~v~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~-~~~iP~IvI~D~p~~k~k 101 (276)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVERVVKKMKEWKPDFIIVISPNPAAPGPTKAREILS-AAGIPCIVIGDAPGKKKK 101 (276)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHHH
T ss_conf 7654134685499952667779789999999988408998999789988999567999997-569988997488533148
Q ss_pred HHHHHCCCCEEEECCC----CHHHHHHHHH
Q ss_conf 9999769986997697----9899999999
Q gi|254780312|r 90 PDSNAPKNAKVLSKPF----HLRDLVNEVN 115 (122)
Q Consensus 90 ~~~~~~g~~~~l~KP~----~~~~L~~~i~ 115 (122)
....+.|..++|.|.= -+.++++-+.
T Consensus 102 d~l~~~g~GYIivk~D~MIGARREFLDP~E 131 (276)
T PRK00994 102 DAMEEQGFGYIIVKADPMIGARREFLDPVE 131 (276)
T ss_pred HHHHHCCCCEEEEECCCCCCHHHHCCCHHH
T ss_conf 899864984799836754431232038799
No 130
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=85.12 E-value=3.5 Score=22.11 Aligned_cols=103 Identities=19% Similarity=0.266 Sum_probs=69.2
Q ss_pred CEE--EEECCC---HHHHHHHHHHHHHCCCEEEEE---C----CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 669--997599---899999999999889899999---9----9799999997189989999836559997999999998
Q gi|254780312|r 3 QKI--LLAEDD---DDMRRFLIKALGKAGYEVVSC---N----NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rI--LiVDD~---~~~r~~l~~~L~~~G~~v~~a---~----~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
+|+ ++.+|+ ......+...+.+.|.+|... . |=..-+..+++..||+|++- ...-++..++++.++
T Consensus 137 k~vav~~~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~ 214 (344)
T cd06348 137 KRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVIS--ALAADGGNLVRQLRE 214 (344)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHH
T ss_conf 889999948975899999999999987698589987168986017899999875199999994--574259999999997
Q ss_pred HCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 5899859999437978999999976998699769798
Q gi|254780312|r 71 LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~ 107 (122)
..-+.|++..++.........+......-+..-|+.+
T Consensus 215 ~G~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 251 (344)
T cd06348 215 LGYNGLIVGGNGFNTPNVFPVCQAACDGVLVAQAYSP 251 (344)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCC
T ss_conf 6999709986677878999867898598799971687
No 131
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=84.77 E-value=2.4 Score=23.08 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=66.8
Q ss_pred HHHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCC-CEEEEECCCCH
Q ss_conf 99999999988989999--99979999999718998999983655-----999799999999858998-59999437978
Q gi|254780312|r 15 RRFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDL-KVMFITGFAAV 86 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~-pii~~s~~~~~ 86 (122)
....-..|...||++.. +.+|...++.+..-+||.|=+|-.+= +-....+++.+-+..... --++..|..+.
T Consensus 135 ~~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~li~~~~~~~~~~~~~~~l~~~a~~~g~~viaegVE~~ 214 (241)
T smart00052 135 AVATLQRLRELGVRIALDDFGTGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP 214 (241)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHCCCHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 99999999970997875378998101899986572042247999961326845589999999999985998999718819
Q ss_pred HHHHHHHHCCCCE----EEECCCCHH
Q ss_conf 9999999769986----997697989
Q gi|254780312|r 87 ALNPDSNAPKNAK----VLSKPFHLR 108 (122)
Q Consensus 87 ~~~~~~~~~g~~~----~l~KP~~~~ 108 (122)
+....+.+.|++. |+.||...+
T Consensus 215 ~~~~~l~~~Gi~~~QG~~~~~P~p~~ 240 (241)
T smart00052 215 EQLDLLRSLGCDYGQGYLFSRPLPLD 240 (241)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCCC
T ss_conf 99999997499998868647589999
No 132
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=83.47 E-value=2.2 Score=23.30 Aligned_cols=62 Identities=16% Similarity=0.386 Sum_probs=47.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHH
Q ss_conf 866999759989999999999988989999-99979999999718998999983655-99979999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELA 65 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~ 65 (122)
-++|.|+|=|+-....+...-.+.|+.+.+ ..|-...+----.+.||++++|= | ...|+.+.
T Consensus 67 p~~I~VvDIDeRll~fI~~~A~~~gl~i~~~~~DlR~pLP~~l~~~FD~f~TDP--PyT~~G~~LF 130 (243)
T pfam01861 67 PKRIAVVDIDERLIKFIERVAKEEGLKIEAFVHDLRNPLPEDLKHKFDVFITDP--PETVDGLKAF 130 (243)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEECCC--CCCHHHHHHH
T ss_conf 854899967589999999999974997168874101489999961679897189--9877899999
No 133
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=82.71 E-value=4.4 Score=21.49 Aligned_cols=101 Identities=9% Similarity=0.008 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHCCCEE-EEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 9999999999889899-999997999999971-89989999836559997999999998589985999943797899999
Q gi|254780312|r 14 MRRFLIKALGKAGYEV-VSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v-~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
.+.-+.++|...+.-. ....+.++|....+. ..-.+=++.+.|-.-++++.++.+++..|++- |=.-+..+.+...+
T Consensus 4 ~~~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~p~~~-vGaGTV~~~e~~~~ 82 (212)
T PRK05718 4 WKTQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEVPEAL-IGAGTVLNPEQLAQ 82 (212)
T ss_pred HHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEEECCHHHHHH
T ss_conf 46369999976987999974899999999999998799789995789619999999997589817-96533134889999
Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 9976998699769798999999999
Q gi|254780312|r 92 SNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 92 ~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
+...|+. |+.-|....++.+..++
T Consensus 83 a~~aGA~-FiVSP~~~~~v~~~a~~ 106 (212)
T PRK05718 83 AIEAGAQ-FIVSPGLTPPLLKACQD 106 (212)
T ss_pred HHHCCCC-EEECCCCCHHHHHHHHH
T ss_conf 9984998-99848998999999998
No 134
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=82.50 E-value=4 Score=21.76 Aligned_cols=91 Identities=15% Similarity=0.170 Sum_probs=65.7
Q ss_pred HHHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEEC-CC----CCHHHHHHHHHHHC--CCCCEEEEECCCCH
Q ss_conf 9999999988989999--9997999999971899899998365-59----99799999999858--99859999437978
Q gi|254780312|r 16 RFLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVM-PE----MDGIELARRATELD--PDLKVMFITGFAAV 86 (122)
Q Consensus 16 ~~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~m-P~----~dG~el~~~ir~~~--~~~pii~~s~~~~~ 86 (122)
......+...||++.. +.+|...++.+..-+||.|=+|-.+ -+ .....+++.+.+.. -+++ ++.+|..+.
T Consensus 135 ~~~i~~l~~~G~~iaiDdfG~~~~~~~~l~~l~~d~iKld~~~v~~~~~~~~~~~~l~~l~~~a~~~~i~-viaegVE~~ 213 (240)
T cd01948 135 LATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK-VVAEGVETE 213 (240)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHCCCE-EEEEECCHH
T ss_conf 9999999864996886168998766899986780154408999973646822389999999999984998-999818509
Q ss_pred HHHHHHHHCCCCE----EEECCCCH
Q ss_conf 9999999769986----99769798
Q gi|254780312|r 87 ALNPDSNAPKNAK----VLSKPFHL 107 (122)
Q Consensus 87 ~~~~~~~~~g~~~----~l~KP~~~ 107 (122)
.....+.+.|++. |+.||...
T Consensus 214 ~~~~~l~~lgi~~~QG~~~~~P~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHCCCCEEECCCCCCCCCC
T ss_conf 9999999859999676912658999
No 135
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=82.32 E-value=4.6 Score=21.41 Aligned_cols=78 Identities=21% Similarity=0.237 Sum_probs=48.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHCCCCEEEEEE--ECCCCCHHHHHHHHHHH-CCCCCE
Q ss_conf 69997599899999999999889899999997---9999999718998999983--65599979999999985-899859
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---ASAYDKVREEPFSLLLTDI--VMPEMDGIELARRATEL-DPDLKV 77 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g---~~al~~~~~~~~dlii~D~--~mP~~dG~el~~~ir~~-~~~~pi 77 (122)
|||+||.-.+.-..+.++|+..|..+....+- ...++.+ ...||.|++-= .-|.-.|. ....+++. ...+||
T Consensus 2 rILiIDn~DSFT~ni~~~lr~lg~~v~V~~~d~~~~~~~~~~-~~~~dgIILSpGPg~P~~~~~-~~~~i~~~~~~~iPI 79 (221)
T PRK07765 2 RILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDVRLADEAAV-AAGFDGVLLSPGPGTPERAGA-SIDMVRACAAAGTPL 79 (221)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-HCCCCEEEECCCCCCHHHCCC-CHHHHHHHHCCCCCE
T ss_conf 799993889339999999987799189998998998899876-348998999699998011672-488998753259988
Q ss_pred E-EEECC
Q ss_conf 9-99437
Q gi|254780312|r 78 M-FITGF 83 (122)
Q Consensus 78 i-~~s~~ 83 (122)
+ ++-|+
T Consensus 80 LGIClG~ 86 (221)
T PRK07765 80 LGVCLGH 86 (221)
T ss_pred EEEEHHH
T ss_conf 9870999
No 136
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=82.21 E-value=4.6 Score=21.38 Aligned_cols=105 Identities=16% Similarity=0.173 Sum_probs=64.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997-999999971899899998365599-979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEM-DGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g-~~al~~~~~~~~dlii~D~~mP~~-dG~el~~~ir~~~~~~pii~~ 80 (122)
..++++|.|+...+ .+++.|+.+.-.+-. .+-++...-++-.++++ .+|+. +-..+.+.+|+.+|+++|+.-
T Consensus 441 ~~~vvid~d~~~v~----~~~~~g~~v~~GDa~~~~~L~~agi~~A~~vvi--t~~d~~~~~~iv~~~r~~~p~~~IiaR 514 (558)
T PRK10669 441 IPLVVIETSRTRVD----ELRERGIRAVLGNAANEEIMQLAHLDCARWLLL--TIPNGYEAGEIVASAREKNPDIEIIAR 514 (558)
T ss_pred CCEEEEECCHHHHH----HHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEE--EECCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98899989899999----999689979997899889998579132499999--819889999999999987869869999
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 43797899999997699869976979899999999996
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
+. +.+...+..+.|++..+.-. .+.-.++.+.|
T Consensus 515 a~--~~~~~~~L~~aGA~~VV~~~---~e~a~~m~e~l 547 (558)
T PRK10669 515 AH--YDDEVAYITERGANQVVMGE---REIARTMLELL 547 (558)
T ss_pred EC--CHHHHHHHHHCCCCEEECCH---HHHHHHHHHHH
T ss_conf 79--89999999977999898937---89999999985
No 137
>pfam07688 KaiA KaiA domain. The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure.
Probab=82.13 E-value=4.6 Score=21.36 Aligned_cols=70 Identities=9% Similarity=0.068 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 599899999999999889899999997999999971--8998999983655999799999999858998599994
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
=-++...+.++..|...-|.+....++.+.++.+.+ +.+||+++-...... .+..++.+..--.|+|++-
T Consensus 7 l~s~~L~q~~~~~L~~dRY~l~~~~s~~df~~~le~~~e~iDcLvle~~~~~~---~~~~qL~~~G~LlPaVvl~ 78 (283)
T pfam07688 7 VESEAIAQRLRRIFQGDRHYLSTFQSLDDFCAYLEDKRERIDCLILYYEANSL---PVLNRLYEQGRLLPAILLE 78 (283)
T ss_pred ECCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCCCH---HHHHHHHHCCCCCCEEEEE
T ss_conf 28889999999865568558885588889999999572568779995077766---9999999758536579971
No 138
>PRK08782 consensus
Probab=81.86 E-value=4.8 Score=21.30 Aligned_cols=100 Identities=13% Similarity=-0.011 Sum_probs=67.9
Q ss_pred HHHHHHHHHHCCCEEE-EECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 9999999998898999-99997999999971-899899998365599979999999985899859999437978999999
Q gi|254780312|r 15 RRFLIKALGKAGYEVV-SCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDS 92 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~-~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~ 92 (122)
.+-..++|++.|.-.. ...+.++|....+. ..-.+=++.+.|-.-++++.++.+++..|++.+ =.-+.-+.+...++
T Consensus 7 ~~~~~~~L~~~~iipVir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~a~~~i~~l~~~~p~~~v-GaGTV~~~e~~~~a 85 (219)
T PRK08782 7 QNTAEQLLRDAGILPVVTVDTLDQARRVADALLEGGLPAIELTLRTPVAIEALAMLKRELPNIVI-GAGTVLSERQLRQS 85 (219)
T ss_pred HCHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEE-EEEEECCHHHHHHH
T ss_conf 25599999878978999759999999999999987998799967993399999999986899479-99970589999999
Q ss_pred HHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 976998699769798999999999
Q gi|254780312|r 93 NAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 93 ~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
...|+. |+.-|....++.+..++
T Consensus 86 ~~aGA~-FiVSP~~~~~v~~~a~~ 108 (219)
T PRK08782 86 VDAGAD-FLVTPGTPAPLARLLAD 108 (219)
T ss_pred HHCCCC-EEECCCCCHHHHHHHHH
T ss_conf 984998-99878997999999998
No 139
>PRK13116 consensus
Probab=81.62 E-value=4.9 Score=21.25 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=28.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999858998599994379------7899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
|++++++|+..+++|+++|+-+. -.....++...|++++|.-
T Consensus 82 ~~~v~~ir~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~aGvdGlIip 129 (278)
T PRK13116 82 LEQIKRVRAAYPEVPIGMLIYGNVPFTRGLDRFYQEFAEAGADSILLP 129 (278)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCHHHHCCHHHHHHHHHHCCCCEEEEC
T ss_conf 999998403589876899805728877279999999977697589946
No 140
>PRK13114 consensus
Probab=81.55 E-value=4.9 Score=21.24 Aligned_cols=42 Identities=7% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999858998599994379------7899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
|++++++|+.++++|+++|+-++ -.....++.+.|+++.|.-
T Consensus 78 f~~v~~~r~~~~~~PivlM~Y~N~i~~~G~~~F~~~~~~aGvdG~Iip 125 (266)
T PRK13114 78 FRIAAEFRQRHPEVPLVLMGYANPMVRRGPDWFAAECKKAGVDGVICV 125 (266)
T ss_pred HHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999874189988799863019998649999999997499779845
No 141
>KOG1203 consensus
Probab=81.38 E-value=5 Score=21.20 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=67.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 66999759989999999999988989999-99979999999718998999983655999799999999858998599994
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
..||||--.-.+.+.+.+.|.+.||.|.+ +-+-+++..++....-|....++.-+...+.+.+..+.+..+....++..
T Consensus 80 ~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~~v~~ 159 (411)
T KOG1203 80 TTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVVIVIK 159 (411)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEEE
T ss_conf 74999558873639999999977970234215736554443253334442224302256541225666301345315874
Q ss_pred CCC
Q ss_conf 379
Q gi|254780312|r 82 GFA 84 (122)
Q Consensus 82 ~~~ 84 (122)
+.+
T Consensus 160 ~~g 162 (411)
T KOG1203 160 GAG 162 (411)
T ss_pred CCC
T ss_conf 234
No 142
>PRK08104 consensus
Probab=80.76 E-value=5.2 Score=21.07 Aligned_cols=95 Identities=8% Similarity=0.011 Sum_probs=50.8
Q ss_pred HHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC
Q ss_conf 9999988989-9999997999999971-8998999983655999799999999858998599994379789999999769
Q gi|254780312|r 19 IKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 (122)
Q Consensus 19 ~~~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g 96 (122)
...|.+...- |....+.++|....+. ..-.+=++.+.|-.-+.++.++.+++..|++- |=.-+..+.+...++...|
T Consensus 9 ~~ll~~~~iipVir~~~~~~a~~la~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~-vGaGTV~~~e~~~~ai~aG 87 (212)
T PRK08104 9 EDIFTRGPVVPVIVINKLEHAVPLAKALVAGGVRVLEVTLRTPCALEAIRAIAKEVPEAI-VGAGTVLNPQQLAEVTEAG 87 (212)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHCC
T ss_conf 999974986899977999999999999998799889996888149999999998689856-8542026799999999859
Q ss_pred CCEEEECCCCHHHHHHHHH
Q ss_conf 9869976979899999999
Q gi|254780312|r 97 NAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 97 ~~~~l~KP~~~~~L~~~i~ 115 (122)
+. |+.-|....++.+.-+
T Consensus 88 A~-FiVSP~~~~~v~~~a~ 105 (212)
T PRK08104 88 AQ-FAISPGLTEELLKAAT 105 (212)
T ss_pred CC-EEECCCCCHHHHHHHH
T ss_conf 99-9984899999999999
No 143
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=80.65 E-value=5.2 Score=21.05 Aligned_cols=48 Identities=6% Similarity=0.158 Sum_probs=31.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999985899859999437------97899999997699869976979899
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSKPFHLRD 109 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~KP~~~~~ 109 (122)
+++++++|+..+++|+++|+-+ +......++.+.|++++|.--...++
T Consensus 74 ~~~~~~~r~~~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~eE 127 (258)
T pfam00290 74 LELVEEIRNKGTSVPIVLMTYYNPVLNYGIERFYAQAAEAGVDGLIIPDLPPEE 127 (258)
T ss_pred HHHHHHHHHCCCCCCEEEEEECHHHHHCCHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999998551289988899852088987299999999997599778707999889
No 144
>PRK13112 consensus
Probab=80.54 E-value=5.3 Score=21.02 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 99999999858998599994379------78999999976998699769798
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~KP~~~ 107 (122)
|++++++|+..+++|+++|+-++ -.....++.+.|++++|.--+..
T Consensus 83 ~~~~~~ir~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~aGvdGvIipDLP~ 134 (279)
T PRK13112 83 LYLAREFRKDDDTTPIVLMGYYNPIYIYGVERFLTDAKAAGVDGLIVVDLPP 134 (279)
T ss_pred HHHHHHHHCCCCCCCEEEEEECHHHHHHCHHHHHHHHHHCCCCEEEECCCCH
T ss_conf 9999985134899887998512499884799999999973998798469997
No 145
>PRK08904 consensus
Probab=80.08 E-value=5.5 Score=20.93 Aligned_cols=96 Identities=11% Similarity=0.026 Sum_probs=60.8
Q ss_pred HHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCC
Q ss_conf 9999988989-9999997999999971-8998999983655999799999999858998599994379789999999769
Q gi|254780312|r 19 IKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96 (122)
Q Consensus 19 ~~~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g 96 (122)
.+.|...+.- |....|.++|....+. ..-.+=.+.+.|-.-+.++.++.+++..|++- |=.-+..+.+...++...|
T Consensus 4 ~~~L~~~~iipVir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~a~~~i~~l~~~~p~~~-vGaGTVl~~e~~~~a~~aG 82 (207)
T PRK08904 4 REILTAGAVVPVMAIDDLSTAVDLSRALVEGGIPTLEITLRTPVGLDAIRLIAKEVPNAI-VGAGTVTNPEQLKAVEDAG 82 (207)
T ss_pred HHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHCC
T ss_conf 999986997999976999999999999998799889995799139999999998689876-8553136899999999849
Q ss_pred CCEEEECCCCHHHHHHHHHH
Q ss_conf 98699769798999999999
Q gi|254780312|r 97 NAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 97 ~~~~l~KP~~~~~L~~~i~~ 116 (122)
+. |+.-|....++.+..++
T Consensus 83 A~-FiVSP~~~~~v~~~a~~ 101 (207)
T PRK08904 83 AV-FAISPGLHESLAKAGHN 101 (207)
T ss_pred CC-EEECCCCCHHHHHHHHH
T ss_conf 99-99848998999999998
No 146
>COG1634 Uncharacterized Rossmann fold enzyme [General function prediction only]
Probab=79.76 E-value=5.6 Score=20.87 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=32.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 6699975998999999999998898999999979999999718998999983655
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP 57 (122)
++|.|+-.-|...+.++. ....+..+++|+-..-+-..-.||++++|+.-+
T Consensus 53 ~~v~vvG~gP~l~e~~~~----~~~~~vi~AdgA~~~l~~~gi~pDiiVTDlDgd 103 (232)
T COG1634 53 REVAVVGAGPSLEEEIKG----LSSEVVIAADGAVSALLERGIRPDIIVTDLDGD 103 (232)
T ss_pred CEEEEECCCCCHHHHHCC----CCCCEEEECCHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 879997778767666334----655359955689999998599775797059889
No 147
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=79.19 E-value=5.9 Score=20.76 Aligned_cols=93 Identities=15% Similarity=0.209 Sum_probs=64.7
Q ss_pred CEEEEE-CCC---HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-599---899999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDD---DDMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~---~~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|+ ...++.+...+...|.++... .|-...+..+++..||+|++ ....-++..+++++++.
T Consensus 139 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pD~V~~--~~~~~~~~~~~~q~~~~ 216 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIII--VGNGPEGAQIANGMAKL 216 (347)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHC
T ss_conf 6699997076366899999999998659867578840799834899999998669999999--47761799999999971
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 89985999943797899999997699
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
..+.|++-..+.........+.....
T Consensus 217 G~~~~~~g~~~~~~~~~~~~~g~~a~ 242 (347)
T cd06335 217 GWKVPIISHWGLSGGNFIEGAGPAAN 242 (347)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHC
T ss_conf 99976794147775899986566416
No 148
>PRK13118 consensus
Probab=79.17 E-value=5.9 Score=20.76 Aligned_cols=82 Identities=7% Similarity=0.111 Sum_probs=47.8
Q ss_pred CEEEEECCHHHHHHHHH---HCCCCEEEEEEEC--CCCCH--------------------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999999799999997---1899899998365--59997--------------------99999999858998599994
Q gi|254780312|r 27 YEVVSCNNGASAYDKVR---EEPFSLLLTDIVM--PEMDG--------------------IELARRATELDPDLKVMFIT 81 (122)
Q Consensus 27 ~~v~~a~~g~~al~~~~---~~~~dlii~D~~m--P~~dG--------------------~el~~~ir~~~~~~pii~~s 81 (122)
|-+..-.|-+..++.+. +...|++=+.+-. |-.|| |++++++|+..+++|+++|+
T Consensus 22 yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~~~~~PivlM~ 101 (269)
T PRK13118 22 FVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQGDQTTPVVLMG 101 (269)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 87171899899999999999769999997898888666579999999999967986889999999986438999989974
Q ss_pred CCCC------HHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 3797------89999999769986997697989
Q gi|254780312|r 82 GFAA------VALNPDSNAPKNAKVLSKPFHLR 108 (122)
Q Consensus 82 ~~~~------~~~~~~~~~~g~~~~l~KP~~~~ 108 (122)
-++. .....++.+.|+++.|.--..++
T Consensus 102 Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP~e 134 (269)
T PRK13118 102 YLNPIEIYGYERFVAQAKEAGVDGLILVDLPPE 134 (269)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCEEECCCCCHH
T ss_conf 000787863999999999859974645899978
No 149
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=79.02 E-value=5.9 Score=20.73 Aligned_cols=93 Identities=10% Similarity=0.059 Sum_probs=45.9
Q ss_pred HHHHHCCCEE-EEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 9999889899-999997999999971-89989999836559997999999998589985999943797899999997699
Q gi|254780312|r 20 KALGKAGYEV-VSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 20 ~~L~~~G~~v-~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
.+|++.+.-. ....+.++|....+. ..-.+=.+.+.|-.-+.++.++++++..|++- |=.-+..+.+...++...|+
T Consensus 3 ~~L~~~~iipV~r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~a~~~I~~l~~~~p~~~-iGaGTV~~~e~~~~a~~aGA 81 (196)
T pfam01081 3 SILREAKIVPVIVIKDKEDALPLAEALAAGGIRVLEVTLRTPCALDAIRLLRKNRPDAL-VGAGTVLNAQQLAEAAEAGA 81 (196)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHCCC
T ss_conf 78966997999977999999999999998799889994798279999999996499967-99983768999999997499
Q ss_pred CEEEECCCCHHHHHHHH
Q ss_conf 86997697989999999
Q gi|254780312|r 98 AKVLSKPFHLRDLVNEV 114 (122)
Q Consensus 98 ~~~l~KP~~~~~L~~~i 114 (122)
. |+.-|....++.+..
T Consensus 82 ~-FivSP~~~~~v~~~a 97 (196)
T pfam01081 82 Q-FVVSPGLTADLLKHA 97 (196)
T ss_pred C-EEECCCCHHHHHHHH
T ss_conf 9-999787639999999
No 150
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=78.98 E-value=5.9 Score=20.72 Aligned_cols=63 Identities=10% Similarity=0.085 Sum_probs=47.4
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEECCH---------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 66999759989----9999999999889899999997---------999999971899899998365599979999999
Q gi|254780312|r 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSCNNG---------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 3 ~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a~~g---------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
||+|||-|-.. ...-+...|+..|.++..+.+. .++.+.+++..+|+||- +-+-+-++.++.|
T Consensus 483 kralIVTD~~~~~~G~vd~v~~~L~~~gi~~~vFd~V~pdPt~~~V~~G~~~~~~~~~D~IIa---lGGGS~iDaAKai 558 (862)
T PRK13805 483 KRAFIVTDRGMVELGYVDKVTDVLRANGVETEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIA---LGGGSPMDAAKIM 558 (862)
T ss_pred CEEEEECCHHHHHCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHH
T ss_conf 779998785187678899999999986983999669899939799999999998649999999---4783488999999
No 151
>PRK06857 consensus
Probab=78.73 E-value=6.1 Score=20.68 Aligned_cols=93 Identities=12% Similarity=0.073 Sum_probs=56.6
Q ss_pred HHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 99988989-9999997999999971-899899998365599979999999985899859999437978999999976998
Q gi|254780312|r 21 ALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 21 ~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
.|.+.+.- |....+.++|....+. ..-.+=++.+.|-.-++++.++.+++..|++- +=.-+.-+.+...++...|+.
T Consensus 8 ~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~-vGaGTV~~~e~~~~a~~aGA~ 86 (209)
T PRK06857 8 KLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAYPDML-IGAGTVLTPEQVDAAKEAGAD 86 (209)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHCCCC
T ss_conf 9997997999975999999999999998799889995899329999999997589948-999937679999999983999
Q ss_pred EEEECCCCHHHHHHHHH
Q ss_conf 69976979899999999
Q gi|254780312|r 99 KVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 99 ~~l~KP~~~~~L~~~i~ 115 (122)
|+.-|.-..++.+..+
T Consensus 87 -FiVSP~~~~~v~~~a~ 102 (209)
T PRK06857 87 -FIVSPGFNPNTVKYCQ 102 (209)
T ss_pred -EEECCCCCHHHHHHHH
T ss_conf -9990899999999999
No 152
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=78.06 E-value=6.3 Score=20.56 Aligned_cols=60 Identities=22% Similarity=0.390 Sum_probs=39.4
Q ss_pred HHCCCEEEEEC-CH-----HHHHHHHHHCCCCEEEEEEECCCCCHH---------HHHHHHHHHCCCCCEEEEECC
Q ss_conf 98898999999-97-----999999971899899998365599979---------999999985899859999437
Q gi|254780312|r 23 GKAGYEVVSCN-NG-----ASAYDKVREEPFSLLLTDIVMPEMDGI---------ELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 23 ~~~G~~v~~a~-~g-----~~al~~~~~~~~dlii~D~~mP~~dG~---------el~~~ir~~~~~~pii~~s~~ 83 (122)
+..|+.|.-.. +| .+.-+.+.+.+++++++|+.-- +.+- .+++.+|+.+|++||++++..
T Consensus 28 r~lg~~viNlG~sG~g~le~~~a~~i~~~~a~~~vi~~g~N-~~~~~~~~~~~~~~~V~~ir~~~p~tPIvlv~~~ 102 (177)
T cd01844 28 RRLGLEVINLGFSGNARLEPEVAELLRDVPADLYIIDCGPN-IVGAEAMVRERLGPLVKGLRETHPDTPILLVSPR 102 (177)
T ss_pred HHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 85499777146675431028899998618998899963467-8874789999999999999987889978998336
No 153
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=77.56 E-value=6.6 Score=20.47 Aligned_cols=41 Identities=17% Similarity=0.322 Sum_probs=26.6
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999858998599994379------7899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
|++++++|+. +++|+++|+-++ -.....++.+.|++++|.-
T Consensus 74 f~~~~~~r~~-~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIip 120 (256)
T PRK13111 74 LELLREIRAK-PTIPIVLMTYYNPIFQYGVEAFAADAAEAGVDGLIIP 120 (256)
T ss_pred HHHHHHHHCC-CCCCEEEEEECCHHHHHCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999998606-8998899850308987099999999997599779816
No 154
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=77.55 E-value=6 Score=20.72 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=48.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECC----CCCHHHHHHHHHHHCCCCCEE-E
Q ss_conf 99975998999999999998898999999979999999718998999983655----999799999999858998599-9
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP----EMDGIELARRATELDPDLKVM-F 79 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP----~~dG~el~~~ir~~~~~~pii-~ 79 (122)
|+|||--..+-..+.+.|+..|+++....+-.. .+.+....||-|++-=. | ..+-..+.+++.+ .++|++ +
T Consensus 1 I~iiD~g~~~~~si~~~l~~~G~~~~vv~~~~~-~~~~~~~~~dgvils~G-P~~~~~~~~~~~~~~i~~--~~~PilGI 76 (181)
T cd01742 1 ILILDFGSQYTHLIARRVRELGVYSEILPNTTP-LEEIKLKNPKGIILSGG-PSSVYEEDAPRVDPEIFE--LGVPVLGI 76 (181)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHCCCCEEEECCC-CCCCCCCCCCHHHHHHHH--CCCCEEEE
T ss_conf 799999863899999999977994999969999-89997349898998999-998555798333099984--79999998
Q ss_pred EECC
Q ss_conf 9437
Q gi|254780312|r 80 ITGF 83 (122)
Q Consensus 80 ~s~~ 83 (122)
+-|+
T Consensus 77 ClG~ 80 (181)
T cd01742 77 CYGM 80 (181)
T ss_pred HHHH
T ss_conf 5999
No 155
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=77.13 E-value=6.7 Score=20.40 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=11.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 69997599899999999999889
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAG 26 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G 26 (122)
+|..||-|......+..-+...|
T Consensus 77 ~v~fVE~~~~~~~~i~~N~~~l~ 99 (198)
T PRK10909 77 GATLLEMDRAVSQQLIKNLATLK 99 (198)
T ss_pred EEEEEECCHHHHHHHHHHHHHHC
T ss_conf 89999789999999999999848
No 156
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=77.09 E-value=6.8 Score=20.39 Aligned_cols=56 Identities=14% Similarity=0.239 Sum_probs=42.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEE--EEEC--CHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 8669997599899999999999889899--9999--979999999718998999983655
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEV--VSCN--NGASAYDKVREEPFSLLLTDIVMP 57 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v--~~a~--~g~~al~~~~~~~~dlii~D~~mP 57 (122)
+.|+.-+|-|+...+..++.+++.|+.- .... ++.+.++....++||+|++|..=+
T Consensus 84 ~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliFIDadK~ 143 (219)
T COG4122 84 DGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVFIDADKA 143 (219)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCCEEEEECCHH
T ss_conf 976999707989999999999975976528988357479999733478856899837843
No 157
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=76.99 E-value=6.8 Score=20.37 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 999999718998999983655-----9997999999998589985999943797899999
Q gi|254780312|r 37 SAYDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 37 ~al~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
.|.+.+.+..||+||+|---. -.+=-|+.+.++. .|.---+++||........+
T Consensus 113 ~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~-kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 113 HAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKA-RPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred HHHHHHHCCCCCEEEEEHHHHHHHCCCCCHHHHHHHHHC-CCCCCEEEEECCCCCHHHHH
T ss_conf 999997388878899721268887388879999999955-99876799979999989999
No 158
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=76.62 E-value=7 Score=20.31 Aligned_cols=106 Identities=14% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE---------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH---
Q ss_conf 8669997599899999999999889899999---------9979999999718998999983655999799999999---
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC---------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT--- 69 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a---------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir--- 69 (122)
.+||||+=-+ .=|..+.+.|+..|.+|+.+ .++.+..+.+....+|+|+. -+|- .++.+-
T Consensus 130 g~rVLi~rG~-gGR~~L~~~L~~rGa~V~~~~~YrR~~p~~~~~~~~~~~~~~~id~i~~------TS~e-~l~~l~~l~ 201 (255)
T PRK05752 130 DPRVLIMRGE-GGRELLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVV------SSGQ-GFEHLLQLA 201 (255)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEE------CCHH-HHHHHHHHH
T ss_conf 8879998167-6178999999988998989987884389998499999998089999998------8199-999999971
Q ss_pred -HH---CCCCCEEEEECCCCHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHHH
Q ss_conf -85---89985999943797899999997699869-9769798999999999960
Q gi|254780312|r 70 -EL---DPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 70 -~~---~~~~pii~~s~~~~~~~~~~~~~~g~~~~-l~KP~~~~~L~~~i~~~l~ 119 (122)
.. ...+|+++. .......+.+.|.... +.++-+.+.|++++++...
T Consensus 202 ~~~~~~l~~~~lvv~----s~RiA~~A~~lG~~~v~~a~~as~~all~AL~~~~a 252 (255)
T PRK05752 202 GADWPELARLPLFVP----SPRVAEQARAAGAQRVVDCRGASAAALLAALRRQAA 252 (255)
T ss_pred HHHHHHHCCCCEEEE----CHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHC
T ss_conf 045798638839983----899999999869996688999997999999998534
No 159
>pfam09936 DUF2168 Uncharacterized protein conserved in bacteria (DUF2168). This domain, found in various hypothetical prokaryotic proteins, has no known function. It is also found in a few prokaryotic tRNA (guanine-N(1)-)-methyltransferases.
Probab=76.21 E-value=7.1 Score=20.24 Aligned_cols=99 Identities=14% Similarity=0.218 Sum_probs=68.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCE-------------EEEECCHHHHHHHHHH---CCCCEEEEEEE-CCCCCHHH
Q ss_conf 66999759989999999999988--989-------------9999997999999971---89989999836-55999799
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA--GYE-------------VVSCNNGASAYDKVRE---EPFSLLLTDIV-MPEMDGIE 63 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~--G~~-------------v~~a~~g~~al~~~~~---~~~dlii~D~~-mP~~dG~e 63 (122)
++-.||-.-+..+.++.+++.-| |+- |..++|-++|++.+.+ .+|-++.++.. -|+.=+++
T Consensus 43 ~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~~NP~R~eAl~~v~~~~sle~ai~~i~~~~G~~p~vvaTsAr~~~~~is~~ 122 (185)
T pfam09936 43 GRYYIVTPLEAQQALVERILAHWQEGYGGEYNPDRKEALSLVKVVSSLEEAIEDIEKRTGQRPLIVATSARKRPNTISYE 122 (185)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHH
T ss_conf 66799560199999999999873259786669678999857300602999999999961999779980475689973999
Q ss_pred HHHHHHHHCCCCCEEEE--ECCCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 99999985899859999--437978999999976998699769798
Q gi|254780312|r 64 LARRATELDPDLKVMFI--TGFAAVALNPDSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 64 l~~~ir~~~~~~pii~~--s~~~~~~~~~~~~~~g~~~~l~KP~~~ 107 (122)
-+++.-+ ..+-|++++ ||++-.+...+ .++|+..|+.-
T Consensus 123 ~lr~~i~-~~~~P~LllFGTGwGL~~e~~~-----~~D~iLePI~g 162 (185)
T pfam09936 123 ELRKMIQ-EREKPVLLLFGTGWGLAPEVLE-----QADYVLEPIRG 162 (185)
T ss_pred HHHHHHH-CCCCCEEEEECCCCCCCHHHHH-----HCCEEECCCCC
T ss_conf 9999984-4588189996587687799997-----46866705636
No 160
>PRK09291 short chain dehydrogenase; Provisional
Probab=76.19 E-value=7.2 Score=20.24 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=35.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 986699975998999999999998898999999979999999
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV 42 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~ 42 (122)
|+|++||---...+-..++..|.+.|+.|..+..-.+.++.+
T Consensus 1 MgK~vLITGAssGIGraiA~~la~~G~~Vi~~~r~~~~l~~l 42 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHRVIAGVQIAPQVTEL 42 (257)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
T ss_conf 999899968985899999999998799899996878999999
No 161
>PRK13140 consensus
Probab=76.03 E-value=7.2 Score=20.21 Aligned_cols=45 Identities=9% Similarity=0.146 Sum_probs=31.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEEC--CCCH
Q ss_conf 9999999985899859999437------97899999997699869976--9798
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSK--PFHL 107 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~K--P~~~ 107 (122)
+++++++|+ ++++|+++||-+ +-.....++.+.|++++|.- |+..
T Consensus 79 ~~~~~~~r~-~~~~pivlM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~ee 131 (257)
T PRK13140 79 FEQLKDIRK-EVQIPLILMGYLNPIMQYGFEKFCKKCAETGIDGVIIPDLPFDD 131 (257)
T ss_pred HHHHHHHHC-CCCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 999999743-68988899905599985179999999998499869835998567
No 162
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.94 E-value=7.3 Score=20.20 Aligned_cols=95 Identities=7% Similarity=-0.039 Sum_probs=59.1
Q ss_pred HHHHHCCCEE-EEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 9999889899-999997999999971-89989999836559997999999998589985999943797899999997699
Q gi|254780312|r 20 KALGKAGYEV-VSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 20 ~~L~~~G~~v-~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
..|.+.+.-. ....+.++|....+. ..-.+-.+.+.|-.-+.++.++.+++..|+--.|=.-..-+.+...++...|+
T Consensus 5 ~~~~~~plvaIlR~~~~~~a~~~~~al~~~Gi~~iEVTl~tp~a~~~I~~l~~~~~~~~~iGAGTVlt~e~~~~ai~aGA 84 (206)
T PRK09140 5 QPFTKLPLIAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDDALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCC
T ss_conf 99985997999958999999999999998699889991799769999999999679865998620467999999998599
Q ss_pred CEEEECCCCHHHHHHHHH
Q ss_conf 869976979899999999
Q gi|254780312|r 98 AKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 98 ~~~l~KP~~~~~L~~~i~ 115 (122)
. |+.-|.-..++.+.-+
T Consensus 85 ~-FiVSP~~~~~vi~~a~ 101 (206)
T PRK09140 85 R-LIVTPNIDPEVIRRAV 101 (206)
T ss_pred C-EEECCCCCHHHHHHHH
T ss_conf 9-9999999899999999
No 163
>pfam00117 GATase Glutamine amidotransferase class-I.
Probab=75.46 E-value=6 Score=20.69 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=50.8
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE--CCCC--CHHHHHHHHHHHCCCCCEE-EE
Q ss_conf 99759989999999999988989999999799999997189989999836--5599--9799999999858998599-99
Q gi|254780312|r 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV--MPEM--DGIELARRATELDPDLKVM-FI 80 (122)
Q Consensus 6 LiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~--mP~~--dG~el~~~ir~~~~~~pii-~~ 80 (122)
||||-...+-..+.+.|++.|+.+.....-..+.+......||.|++-=. =|.- .-.++++++.+ ..+|++ ++
T Consensus 1 liiD~~dsft~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~d~iilspGpg~p~~~~~~~~~i~~~~~--~~~PiLGIC 78 (187)
T pfam00117 1 LLIDNGDSFTYNLARALRELGVEVEVVPNDTPAEEILELLNPDGIIISPGPGSPGDAGGAIEAIKELRE--NKIPILGIC 78 (187)
T ss_pred CEEECCCCHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCEEEECCCCCCHHHCCCHHHHHHHHHH--CCCCEEEEE
T ss_conf 989378638999999998689979999899986999852599989991998611013458999999997--799899998
Q ss_pred ECC
Q ss_conf 437
Q gi|254780312|r 81 TGF 83 (122)
Q Consensus 81 s~~ 83 (122)
-|+
T Consensus 79 lG~ 81 (187)
T pfam00117 79 LGH 81 (187)
T ss_pred HHH
T ss_conf 889
No 164
>PRK13121 consensus
Probab=75.35 E-value=7.5 Score=20.11 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC------HHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999998589985999943797------899999997699869976979899
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAA------VALNPDSNAPKNAKVLSKPFHLRD 109 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~------~~~~~~~~~~g~~~~l~KP~~~~~ 109 (122)
+++++++|+..+++|+++||-++. .....++.+.|+++.|.--..+++
T Consensus 82 ~~~~~~~r~~~~~~PivlM~Y~N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE 135 (265)
T PRK13121 82 LAMVKEFRETNQTTPVVLMGYANPIERMGYDAFAAAARAAGVDGVLVVDYPPEE 135 (265)
T ss_pred HHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999998310379999898621459999719999999987298734348999899
No 165
>TIGR00708 cobA cob(I)alamin adenosyltransferase; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) . Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type , EutT-type and PduO-type . Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represnts the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins . CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin , . ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid ac-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=74.87 E-value=7.8 Score=20.03 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHCCCCEEEEEEE-----CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 9999997189989999836-----559997999999998589985999943797899999
Q gi|254780312|r 37 SAYDKVREEPFSLLLTDIV-----MPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 37 ~al~~~~~~~~dlii~D~~-----mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
+|.+.+++..+|++|+|-- .--+|=-|+.+.|++ .|+-.-+++||-.-......
T Consensus 105 ~a~~~~~~~~~dlvLLDE~~~~l~~GyL~veeV~~~L~~-kp~~~~vvlTGR~aP~~L~~ 163 (191)
T TIGR00708 105 KAKEVLADSEYDLVLLDELTVALKFGYLDVEEVVEVLQE-KPKSQHVVLTGRGAPQELVE 163 (191)
T ss_pred HHHHHHCCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHC-CCCCCEEEEECCCCCHHHHH
T ss_conf 999986498877640342345553489788999999855-84567788866878688997
No 166
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=74.77 E-value=7.8 Score=20.02 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=53.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--C---EEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCC-----HHHHHHHHHHH
Q ss_conf 669997599899999999999889--8---999-999979999999718998999983655999-----79999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG--Y---EVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMD-----GIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G--~---~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~d-----G~el~~~ir~~ 71 (122)
+|+-+||=|+.+.+..++.|.... . ++. ...||.+-++.... .||+||+|..=|.-- -.++.+.+++.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~ 179 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIVDSTDPVGPAEALFTEEFYEGCRRA 179 (282)
T ss_pred CEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCC-CCCEEEECCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 337999708899999998666754335797368996107999874887-6778998588998843023779999999986
Q ss_pred CCCCCEEEE
Q ss_conf 899859999
Q gi|254780312|r 72 DPDLKVMFI 80 (122)
Q Consensus 72 ~~~~pii~~ 80 (122)
..+--+++.
T Consensus 180 L~~~Gi~v~ 188 (282)
T COG0421 180 LKEDGIFVA 188 (282)
T ss_pred CCCCCEEEE
T ss_conf 288968999
No 167
>pfam01993 MTD methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase. This enzyme family is involved in formation of methane from carbon dioxide EC:1.5.99.9. The enzyme requires coenzyme F420.
Probab=74.56 E-value=7.9 Score=19.98 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=62.9
Q ss_pred HHHHHHHCCCEEEEECCHH--------HH-HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf 9999998898999999979--------99-99997189989999836559997999999998589985999943797899
Q gi|254780312|r 18 LIKALGKAGYEVVSCNNGA--------SA-YDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVAL 88 (122)
Q Consensus 18 l~~~L~~~G~~v~~a~~g~--------~a-l~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~ 88 (122)
+-..-.+.+..|..+.+|. +. -+++.++.||+++.=--=|...|-.-++++-. ...+|.|++|.-.....
T Consensus 22 LDErAdRedI~vrv~gsGaKm~pe~~e~~~~~~l~~~~pDf~i~isPN~a~PGP~~ARE~l~-~~giP~IvI~D~p~~K~ 100 (276)
T pfam01993 22 LDERADREDIEVRVVGSGAKMDPECVEEVVLDMLEEFEPDFVIYISPNPAAPGPKKAREMLS-DSGYPAVIIGDAPGLKV 100 (276)
T ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHH-HCCCCEEEECCCCCHHH
T ss_conf 77652346864999526666798889999999998618998999789988999567999997-56998799837863325
Q ss_pred HHHHHHCCCCEEEECCC----CHHHHHHHHH
Q ss_conf 99999769986997697----9899999999
Q gi|254780312|r 89 NPDSNAPKNAKVLSKPF----HLRDLVNEVN 115 (122)
Q Consensus 89 ~~~~~~~g~~~~l~KP~----~~~~L~~~i~ 115 (122)
.....+.|..++|.|.= -+.++++-+.
T Consensus 101 kd~l~~~g~GYIivk~D~MIGARREFLDP~E 131 (276)
T pfam01993 101 KDEMEEQGLGYILVKADPMIGARREFLDPTE 131 (276)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHCCCHHH
T ss_conf 8999865984799836764431232038799
No 168
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=74.49 E-value=7.9 Score=19.97 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=70.2
Q ss_pred CCCEEEEECC--------CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE-CCCCCHH-----H---
Q ss_conf 9866999759--------989999999999988989999999799999997189989999836-5599979-----9---
Q gi|254780312|r 1 MNQKILLAED--------DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV-MPEMDGI-----E--- 63 (122)
Q Consensus 1 M~~rILiVDD--------~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~-mP~~dG~-----e--- 63 (122)
|.+||.|+=- +-...+.+...|...||+|....-....+..+.+..||+++.-+- -++.||. |
T Consensus 3 ~~~kI~vl~GG~S~E~eVSl~S~~~v~~aL~~~~y~v~~id~~~~~~~~l~~~~~D~vf~~lHG~~GEDG~iQglLe~~~ 82 (304)
T PRK01372 3 MFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPGEDPAAELKELGFDRVFNALHGRGGEDGTIQGLLELLG 82 (304)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 77718999367871289999999999998837599799982896467787533999999906899985649999999859
Q ss_pred ------------------HHHHHHHHC--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC------------HHHHH
Q ss_conf ------------------999999858--9985999943797899999997699869976979------------89999
Q gi|254780312|r 64 ------------------LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH------------LRDLV 111 (122)
Q Consensus 64 ------------------l~~~ir~~~--~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~------------~~~L~ 111 (122)
+++++-+.. |.+|-..++..... .....+.+ .-++.||.+ .++|.
T Consensus 83 IPYtGs~~~asal~mDK~~tK~i~~~~gI~tp~~~~~~~~~~~--~~~~~~l~-~P~iVKP~~~GSSiGv~~V~~~~el~ 159 (304)
T PRK01372 83 IPYTGSGVLASALAMDKLRTKLVWQAAGLPTAPWVVLTRAEDL--LAAIDKLG-LPLVVKPAREGSSVGVTKVKEADELP 159 (304)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHH--HHHHHHHC-CCEEEEECCCCCCCCEEEECCHHHHH
T ss_conf 9835799899877653899999999869998984998653139--99987618-98799766888666538966988999
Q ss_pred HHHHHHHHC
Q ss_conf 999999603
Q gi|254780312|r 112 NEVNRLLTI 120 (122)
Q Consensus 112 ~~i~~~l~~ 120 (122)
.+++.+.+.
T Consensus 160 ~ai~~a~~~ 168 (304)
T PRK01372 160 AALELAFKY 168 (304)
T ss_pred HHHHHHHHC
T ss_conf 999998744
No 169
>PRK13131 consensus
Probab=73.15 E-value=8.6 Score=19.78 Aligned_cols=42 Identities=7% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999858998599994379------7899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
+++++++|+..+++|+++||-++ -.....++.+.|++++|.-
T Consensus 75 ~~~~~~~r~~~~~~pivlM~Y~N~i~~yG~e~F~~~~~~~GvdGvIip 122 (257)
T PRK13131 75 FQLLKKIRDYNHHIPIGLLAYANLIFSYGVDGFYAQAKECGVDSVLIA 122 (257)
T ss_pred HHHHHHHHHCCCCCCEEEECCHHHHHHHCHHHHHHHHHHCCCCCEECC
T ss_conf 999999870499988899927689998579999999986599856558
No 170
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.85 E-value=8.7 Score=19.73 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=62.8
Q ss_pred HHHHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 9999999988989-9999997999999971-8998999983655999799999999858998599994379789999999
Q gi|254780312|r 16 RFLIKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 16 ~~l~~~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~ 93 (122)
+-+-..|...+.- |....|.++|....+. ..-.+=++.+.|-.-++++.++.+++..|+.- |=.-+.-+.+...++.
T Consensus 6 ~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~p~~~-vGaGTVl~~e~~~~a~ 84 (212)
T PRK06015 6 EKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGAGTILNAKQFEDAA 84 (212)
T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHH
T ss_conf 999999987997999977999999999999998799889996899519999999998699967-9542115699999999
Q ss_pred HCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 76998699769798999999999
Q gi|254780312|r 94 APKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 94 ~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
..|+. |+.-|....++.+..++
T Consensus 85 ~aGA~-FiVSP~~~~~v~~~a~~ 106 (212)
T PRK06015 85 KAGSR-FIVSPGTTQELLAAAND 106 (212)
T ss_pred HCCCC-EEECCCCCHHHHHHHHH
T ss_conf 84998-99858999999999998
No 171
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=72.75 E-value=8.7 Score=19.72 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=61.4
Q ss_pred HHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEE-EE------CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 99999988989999-9997999999971899899998-36------5599979999999985899859999437978999
Q gi|254780312|r 18 LIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTD-IV------MPEMDGIELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 18 l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D-~~------mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
+.+.++..|..+.. +.+.++|....+.. .|.|+.- .+ -...+-+.++.++++.. ++|+|.--|..+.+..
T Consensus 94 ~v~~l~~~g~~v~~~v~s~~~A~~a~~~G-aD~iv~qG~eAGGH~g~~~~~~~~lv~~v~~~~-~ipviaAGGI~~g~~i 171 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAAG-ADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-DIPVIAAGGIADGRGI 171 (236)
T ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH-CCCEEEECCCCCHHHH
T ss_conf 99999982998999589899999999818-998999777777788987555677999999982-9868965462778999
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999769986997
Q gi|254780312|r 90 PDSNAPKNAKVLS 102 (122)
Q Consensus 90 ~~~~~~g~~~~l~ 102 (122)
..++..|++....
T Consensus 172 ~aal~lGA~gV~~ 184 (236)
T cd04730 172 AAALALGADGVQM 184 (236)
T ss_pred HHHHHHCCCEEEE
T ss_conf 9999808979995
No 172
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=72.75 E-value=8.7 Score=19.72 Aligned_cols=95 Identities=12% Similarity=0.057 Sum_probs=58.0
Q ss_pred HHHHHHHCCCE-EEEECCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 99999988989-999999799999997---18998999983655999799999999858998599994379789999999
Q gi|254780312|r 18 LIKALGKAGYE-VVSCNNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 18 l~~~L~~~G~~-v~~a~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~ 93 (122)
+-..|++.+.- |....+.++|....+ +.-+.+ +.+.|-.-+.++.++.+++..|++ +|=.-+.-+.+...++.
T Consensus 6 ~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~--iEiTl~t~~a~~~I~~l~~~~p~~-~iGaGTV~~~e~~~~a~ 82 (210)
T PRK07455 6 WLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRL--IEITWNSDQPAELISQLREKLPEC-IIGTGTLLTLEDLEEAI 82 (210)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHHHHHHHHCCCC-EEEEEECCCHHHHHHHH
T ss_conf 999999799799997599999999999999879988--999689988999999999878996-89888187899999999
Q ss_pred HCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 76998699769798999999999
Q gi|254780312|r 94 APKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 94 ~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
..|+. |+.-|....++.+..++
T Consensus 83 ~aGA~-FiVSP~~~~~vi~~a~~ 104 (210)
T PRK07455 83 AAGAQ-FCFTPHVDLELIQAAVA 104 (210)
T ss_pred HCCCC-EEECCCCCHHHHHHHHH
T ss_conf 86999-99868888999999998
No 173
>PRK11596 EAL domain-containing protein; Provisional
Probab=70.56 E-value=9.8 Score=19.42 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=66.6
Q ss_pred HHHHCC-CEEEEECCHHHHHHHHHHCCCCEEEEEEEC-----CCCCHHHHHHHHHHHCC--CCCEEEEECCCCHHHHHHH
Q ss_conf 999889-899999997999999971899899998365-----59997999999998589--9859999437978999999
Q gi|254780312|r 21 ALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVM-----PEMDGIELARRATELDP--DLKVMFITGFAAVALNPDS 92 (122)
Q Consensus 21 ~L~~~G-~~v~~a~~g~~al~~~~~~~~dlii~D~~m-----P~~dG~el~~~ir~~~~--~~pii~~s~~~~~~~~~~~ 92 (122)
.+...| ..++-+.+|...+..+++-++|.+=.|-.+ .+-.+..+++.|=.... ...+ +.=|....+.....
T Consensus 148 ~l~~~~~lalDDFGTGySSLsyL~~lp~d~lKIDrsFv~~~~~~~~~~~iv~~ii~la~~Lg~~V-VAEGVET~eQ~~~L 226 (255)
T PRK11596 148 SMCEFGPLWLDDFGTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRTLFSQLLHLMNRYCRGV-IVEGVETPEEWRDV 226 (255)
T ss_pred HHHHCCCEEECCCCCCHHHHHHHHHCCCCEEEECHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCE-EEEECCCHHHHHHH
T ss_conf 99857928883698867899999868999899877998542369637999999999999839908-99709859999999
Q ss_pred HHCCCC----EEEECCCCHHHHHH
Q ss_conf 976998----69976979899999
Q gi|254780312|r 93 NAPKNA----KVLSKPFHLRDLVN 112 (122)
Q Consensus 93 ~~~g~~----~~l~KP~~~~~L~~ 112 (122)
...|++ .|+.||...++|..
T Consensus 227 ~~~Gc~~~QGY~fsrP~p~d~l~~ 250 (255)
T PRK11596 227 QRSPAFAAQGYFLSRPAPFDTLET 250 (255)
T ss_pred HHCCCCEEECCCCCCCCCHHHHHH
T ss_conf 976999974581141799999996
No 174
>CHL00194 ycf39 Ycf39; Provisional
Probab=69.91 E-value=10 Score=19.33 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=28.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHH
Q ss_conf 699975998999999999998898999999-97999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASA 38 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~a 38 (122)
+|||+--.=.+-..+.+.|...||+|.+.. +.+.|
T Consensus 2 ~ILV~GATG~lGr~vVr~Ll~~G~~Vr~lvRnp~ka 37 (319)
T CHL00194 2 SLLVIGATGTLGRQIVRRALDEGYQVKCLVRNLRKA 37 (319)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHH
T ss_conf 799989985899999999996889089995786763
No 175
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=69.19 E-value=11 Score=19.24 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC------HHHHHHHHHCCCCEEEEC--CCCHHH
Q ss_conf 999999998589985999943797------899999997699869976--979899
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAA------VALNPDSNAPKNAKVLSK--PFHLRD 109 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~------~~~~~~~~~~g~~~~l~K--P~~~~~ 109 (122)
+++++.+|+.++++|+++|+-++- .....++.+.|++++|.- |+...+
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~ 137 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESD 137 (265)
T ss_pred HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
T ss_conf 99999998618999889987011887735999999999759987985789866777
No 176
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=69.00 E-value=11 Score=19.22 Aligned_cols=82 Identities=15% Similarity=0.113 Sum_probs=55.4
Q ss_pred CCEEEEECCC----HHHHHHHHHHHHHC--CCEEEE---E-----CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHH
Q ss_conf 8669997599----89999999999988--989999---9-----99799999997189989999836559997999999
Q gi|254780312|r 2 NQKILLAEDD----DDMRRFLIKALGKA--GYEVVS---C-----NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67 (122)
Q Consensus 2 ~~rILiVDD~----~~~r~~l~~~L~~~--G~~v~~---a-----~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ 67 (122)
.+||-++.+| ......++..+... |+++.. . .|-...+..+++..||+|++- ...-++..++++
T Consensus 143 ~k~vai~~~d~~~g~~~~~~~~~~~~~~~~g~~vv~~~~~p~~~~~Df~~~i~~i~~~~pd~v~~~--~~~~~~~~~~kq 220 (342)
T cd06329 143 GKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKIKASGADTVITG--NWGNDLLLLVKQ 220 (342)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHH
T ss_conf 976999369973769999999999998169958876785258887766999999986699999993--775569999999
Q ss_pred HHHHCCCCCEEEEECCCC
Q ss_conf 998589985999943797
Q gi|254780312|r 68 ATELDPDLKVMFITGFAA 85 (122)
Q Consensus 68 ir~~~~~~pii~~s~~~~ 85 (122)
.++...+.|++..++...
T Consensus 221 ~~~~g~~~~~~~~~~~~~ 238 (342)
T cd06329 221 AADAGLKLPFYTPYLDQP 238 (342)
T ss_pred HHHCCCCCCEEEEECCCH
T ss_conf 997699981899707877
No 177
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=68.39 E-value=11 Score=19.14 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999988989999--9997999999971899899998365599979-----999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-+.||.|.. ..|..-|-++..-+ -..+|=+.=|--+|. ..++.|++ .+++|+|+=-|.+.....
T Consensus 128 ~Aae~Lv~eGF~VlpY~~dD~v~akrLe~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e-~~~vPvIVDAGiG~pSdA 204 (267)
T CHL00162 128 KAAEFLVRKGFTVLPYINADPVLAKQLEDIG--CATVMPLGSPIGSGQGLQNLLNLQIIIE-NAKIPVIIDAGIGTPSEA 204 (267)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHH-CCCCCEEEECCCCCHHHH
T ss_conf 9999999789999895489989999998659--8688634551236887589999999996-489988996898967888
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHH
Q ss_conf 99997699869976-----9798999999999
Q gi|254780312|r 90 PDSNAPKNAKVLSK-----PFHLRDLVNEVNR 116 (122)
Q Consensus 90 ~~~~~~g~~~~l~K-----P~~~~~L~~~i~~ 116 (122)
.++++.|++.+|.- --+|-...++++.
T Consensus 205 a~aMElG~DaVL~NTAIA~A~dPv~MA~A~k~ 236 (267)
T CHL00162 205 SQAMELGASGVLLNTAVAKAKNPEQMAKAMKL 236 (267)
T ss_pred HHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
T ss_conf 99997467778701676716998999999999
No 178
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=67.50 E-value=11 Score=19.03 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=25.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHC-CCCEEEEEE
Q ss_conf 66999759989999999999988989--99-999979999999718-998999983
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVREE-PFSLLLTDI 54 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~~-~~dlii~D~ 54 (122)
.+++.||-|......+.+-++..|++ +. ...|...++..+... +||+|++|=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHCCCCCCCCEEEECC
T ss_conf 56999965989999999999984876125998400899987227788512899689
No 179
>PRK13124 consensus
Probab=67.48 E-value=11 Score=19.03 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=13.8
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 99999998589985999943797899999997699869
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
++++++|+. .++|+.+==|.+..+.... ....+++.
T Consensus 185 ~~i~~ik~~-t~~Pv~vGFGI~~~e~v~~-~~~~ADGv 220 (257)
T PRK13124 185 EFIRTVKQY-SNVPVAVGFGISTPEQVQK-MKEIADGV 220 (257)
T ss_pred HHHHHHHHC-CCCCEEEEECCCCHHHHHH-HHHHCCEE
T ss_conf 999999861-7998389844699999999-98019999
No 180
>PRK13137 consensus
Probab=67.48 E-value=11 Score=19.03 Aligned_cols=45 Identities=16% Similarity=0.146 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC------HHHHHHHHHCCCCEEEEC--CCCH
Q ss_conf 999999998589985999943797------899999997699869976--9798
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAA------VALNPDSNAPKNAKVLSK--PFHL 107 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~------~~~~~~~~~~g~~~~l~K--P~~~ 107 (122)
+++++++|+. .++|+++|+-++. .....++.+.|++++|.- |+..
T Consensus 89 l~~~~~~r~~-~~~PivlM~Y~N~i~~yG~e~F~~~a~~aGvdGlIipDLP~eE 141 (266)
T PRK13137 89 LELVRELRAL-TDTPLVIMTYLNPIYAVGPEEFMRLFQEAGVDGLILPDLPPDQ 141 (266)
T ss_pred HHHHHHHCCC-CCCCEEEEECHHHHHHHCHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 9999975556-8987899934589987589999999997696099947999788
No 181
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=67.39 E-value=11 Score=19.02 Aligned_cols=97 Identities=14% Similarity=0.065 Sum_probs=66.0
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999988989999--9997999999971899899998365599979-----999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-+.||.|.. ..|..-|-++..-+ -..+|=+.=|--+|. ..++.|++.. ++|+|+=-|.+.....
T Consensus 114 ~Aae~Lv~~GF~VlpY~~~D~v~akrLe~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~A 190 (248)
T cd04728 114 KAAEILVKEGFTVLPYCTDDPVLAKRLEDAG--CAAVMPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGTPSDA 190 (248)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHH
T ss_conf 9999999889989786788999999999749--534520456434798879999999999847-9988984799975678
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHH
Q ss_conf 99997699869976-----9798999999999
Q gi|254780312|r 90 PDSNAPKNAKVLSK-----PFHLRDLVNEVNR 116 (122)
Q Consensus 90 ~~~~~~g~~~~l~K-----P~~~~~L~~~i~~ 116 (122)
.++++.|++..|.- --+|-...++++.
T Consensus 191 a~aMElG~daVL~NTAIA~A~dPv~MA~A~~~ 222 (248)
T cd04728 191 AQAMELGADAVLLNTAIAKAKDPVAMARAFKL 222 (248)
T ss_pred HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf 99987265533454687716998999999999
No 182
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=66.85 E-value=12 Score=18.95 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 89999999999988989999999799999997189989999836559997999999998589985999943797899999
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
+..+.-+. -+...|..+..++|..+.--..-.+++|+=+.-.- -.-.|..+-+++++.+-..+-+++.|-.-...-..
T Consensus 49 pe~~~W~~-e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A-~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlg 126 (175)
T COG2179 49 PELRAWLA-ELKEAGIKVVVVSNNKESRVARAAEKLGVPFIYRA-KKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLG 126 (175)
T ss_pred HHHHHHHH-HHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEECC-CCCCHHHHHHHHHHCCCCHHHEEEECCHHHHHHHC
T ss_conf 99999999-99865977999818978888766652597234022-59627999999998099836879985125566641
Q ss_pred HHHCCCCEEEECCCC-HHHHHHHHHHHHH
Q ss_conf 997699869976979-8999999999960
Q gi|254780312|r 92 SNAPKNAKVLSKPFH-LRDLVNEVNRLLT 119 (122)
Q Consensus 92 ~~~~g~~~~l~KP~~-~~~L~~~i~~~l~ 119 (122)
+...|...++.+|+. ++.+...+++-++
T Consensus 127 gnr~G~~tIlV~Pl~~~d~~~t~~nR~~E 155 (175)
T COG2179 127 GNRAGMRTILVEPLVAPDGWITKINRWRE 155 (175)
T ss_pred CCCCCCEEEEEEEECCCCCHHHHHHHHHH
T ss_conf 34147279999871166405555568999
No 183
>KOG0780 consensus
Probab=66.60 E-value=12 Score=18.92 Aligned_cols=59 Identities=14% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH----HCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 799999997189989999836559997999999998----58998599994379789999999
Q gi|254780312|r 35 GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE----LDPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 35 g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~----~~~~~pii~~s~~~~~~~~~~~~ 93 (122)
..++.+.++++.||+||+|-.=-.-.-.++.+++++ ..|+.-+.++-+...+....++.
T Consensus 172 a~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780 172 ASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHH
T ss_conf 999999888639728998278730124899999999985159873899985620076799999
No 184
>pfam01976 DUF116 Protein of unknown function DUF116. This archaebacterial protein has no known function. The protein contains seven conserved cysteines and may also be an integral membrane protein.
Probab=65.99 E-value=12 Score=18.85 Aligned_cols=57 Identities=18% Similarity=0.165 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCCEE
Q ss_conf 99999998898999999979999999718998999983655999799999999858-998599
Q gi|254780312|r 17 FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD-PDLKVM 78 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~pii 78 (122)
-+...-++.||++..+..|.-|...+.+..|+.|+-=.- -.++.+.++... ..+|+.
T Consensus 77 ~l~~la~~~G~~v~i~~Ggt~~rkii~~~~p~~IigVAC-----~~dL~~gi~~~~~~~ip~~ 134 (158)
T pfam01976 77 DLKELAEEYGYKVYIVPGGTFAKKIIKEYRPKAIIGVAC-----ERDLNEGIQDLKKKGIPVQ 134 (158)
T ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEEEC-----HHHHHHHHHHHHCCCCCEE
T ss_conf 799999980987999648289999998729998999920-----4899999998650899869
No 185
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=65.81 E-value=12 Score=18.83 Aligned_cols=66 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHH----CCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989--99-99997999999971----89989999836559997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE--VV-SCNNGASAYDKVRE----EPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~----~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
-+|.-+|-|+......+..+...|+. +. ...++.+.++.+.. ++||+|++|..=. +-.+.++.+.+
T Consensus 70 g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~l~~~~~~~~fD~vFiDadK~--~Y~~y~e~~~~ 142 (204)
T pfam01596 70 GKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQLVEDKPLGEFDFAFVDADKS--SYPNYYERLLE 142 (204)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEEECCHH--HHHHHHHHHHH
T ss_conf 68999980489999999999977987447999874999999998447777643899818887--77999999998
No 186
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=65.72 E-value=12 Score=18.82 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHCCCCEEEEEEEC-CCCCHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 989999999999988989999---9997999999971899899998365-5999799999999858-99859999
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREEPFSLLLTDIVM-PEMDGIELARRATELD-PDLKVMFI 80 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~~~dlii~D~~m-P~~dG~el~~~ir~~~-~~~pii~~ 80 (122)
...-...+...|+..||++.. -...++-.+.+.+..||+|-....+ +..+.++.+.++++.. +++|+++=
T Consensus 12 h~~g~~~v~~~l~~~g~~v~~lg~~~~~e~~v~~~~~~~~dvVgiS~~~~~~~~~~~~~~~~~~~~~~~v~vv~G 86 (125)
T cd02065 12 HDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEEDADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVG 86 (125)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 678899999999978998998999889999999998608999998521130189999999999967998759975
No 187
>TIGR01497 kdpB K+-transporting ATPase, B subunit; InterPro: IPR006391 These sequences describe the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In Escherichia coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit . The function of KdpC is unclear, although it has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex . The potassium P-type ATPases have been characterised as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB) . Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics . ; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=65.42 E-value=13 Score=18.78 Aligned_cols=83 Identities=13% Similarity=0.147 Sum_probs=56.0
Q ss_pred ECCHHHHHHHHHHC--CCCEEEEEEECC--------CCCHH-HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 99979999999718--998999983655--------99979-99999998589985999943797899999997699869
Q gi|254780312|r 32 CNNGASAYDKVREE--PFSLLLTDIVMP--------EMDGI-ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 32 a~~g~~al~~~~~~--~~dlii~D~~mP--------~~dG~-el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
..+-.++++...++ .|=+|..|-+.= -..|+ |=.+++|+.. ++.||+||-..--.+.-|.+.|+++|
T Consensus 411 p~dlD~av~qVa~~GgTPLvVc~dn~iyGVIyLKDiVK~Gi~ERF~qLR~~G--ikTiM~TGDNrlTAa~IA~EAGVDdF 488 (675)
T TIGR01497 411 PKDLDEAVDQVAKQGGTPLVVCVDNKIYGVIYLKDIVKSGIKERFEQLRKMG--IKTIMLTGDNRLTAAVIAKEAGVDDF 488 (675)
T ss_pred CHHHHHHHHHHHHCCCCCEEEEECCEEEEEEEEECCCCCCHHHHHHHHHHCC--CEEEEECCCCHHHHHHHHHHCCCCCC
T ss_conf 8376788999873289847999757789889873013786045788872258--66899728975789999976288852
Q ss_pred EECCCCHHHHHHHHHHH
Q ss_conf 97697989999999999
Q gi|254780312|r 101 LSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 101 l~KP~~~~~L~~~i~~~ 117 (122)
|.- ..|++=++.|++-
T Consensus 489 iAE-a~PEdKi~~I~~e 504 (675)
T TIGR01497 489 IAE-ATPEDKIEVIKKE 504 (675)
T ss_pred CCC-CCCHHHHHHHHHH
T ss_conf 015-8836789999875
No 188
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=65.20 E-value=7.8 Score=20.00 Aligned_cols=65 Identities=22% Similarity=0.355 Sum_probs=48.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 86699975998999999999998898999--999979999999718998999983655999799999999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+.+|.-||-++...+..+..|...|+.-. ...||..++. .+.+||.|++....|... -.++++++
T Consensus 101 ~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~ 167 (214)
T PRK13942 101 SGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYE--ENAPYDRIYVTAAGPDIP-KPLLEQLK 167 (214)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCC-HHHHHHCC
T ss_conf 78579997179999999999986376875898567566784--459812799985176578-99999628
No 189
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=64.18 E-value=13 Score=18.64 Aligned_cols=38 Identities=18% Similarity=0.400 Sum_probs=16.5
Q ss_pred CCEEEEEEECCCCC-HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 98999983655999-799999999858998599994379
Q gi|254780312|r 47 FSLLLTDIVMPEMD-GIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 47 ~dlii~D~~mP~~d-G~el~~~ir~~~~~~pii~~s~~~ 84 (122)
||+|++...=|.+. ..++++.+|+..|++.+++.-.|.
T Consensus 69 ~d~v~i~t~Tps~~~~~~~a~~~K~~~P~~~ivlgG~H~ 107 (472)
T TIGR03471 69 YDLVVLHTSTPSFPSDVKTAEALKEQNPATKIGFVGAHV 107 (472)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 998999925865688999999999768898899978764
No 190
>TIGR01134 purF amidophosphoribosyltransferase; InterPro: IPR005854 Purine nucleotides are synthesised both via the de novo pathway and via the salvage pathway and are vital for cell functions and cell proliferation through DNA and RNA syntheses and ATP energy supply. Amidophosphoribosyltransferase (2.4.2.14 from EC) is the rate-limiting enzyme in the de novo pathway of purine ribonucleotide synthesis and is regulated by feedback inhibition by AMP and GMP . 5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = L-glutamine + 5-phospho-alpha-D-ribose 1-diphosphate + H2O This family contains sequences which are members of the MEROPS peptidase family C44 (glutamine phosphoribosylpyrophosphate amidotransferase precursor, clan PB(C)) and sequences which are classed as non-peptidase homologs. These are sequences either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004044 amidophosphoribosyltransferase activity, 0009113 purine base biosynthetic process.
Probab=64.08 E-value=13 Score=18.63 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=23.0
Q ss_pred CEEEEECCC----HHHHHHHHHHHHHCCC-EEEEE-CCH
Q ss_conf 669997599----8999999999998898-99999-997
Q gi|254780312|r 3 QKILLAEDD----DDMRRFLIKALGKAGY-EVVSC-NNG 35 (122)
Q Consensus 3 ~rILiVDD~----~~~r~~l~~~L~~~G~-~v~~a-~~g 35 (122)
|||++|||+ .+.|+++ .+|+..|= +|+.. +++
T Consensus 361 krVvlVDDSiVRGTTSr~vV-~mlR~AGA~EVH~riasP 398 (467)
T TIGR01134 361 KRVVLVDDSIVRGTTSRQVV-EMLRDAGAREVHVRIASP 398 (467)
T ss_pred CEEEEEECCEECCCHHHHHH-HHHHHCCCEEEEEEECCC
T ss_conf 75899942412071378999-999872983898762588
No 191
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=63.88 E-value=13 Score=18.61 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=50.4
Q ss_pred CCEEEEECCCHHHH---HHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 86699975998999---99999999889899999--------99799999997189989999836559997999999998
Q gi|254780312|r 2 NQKILLAEDDDDMR---RFLIKALGKAGYEVVSC--------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 2 ~~rILiVDD~~~~r---~~l~~~L~~~G~~v~~a--------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.+|+|||-|..... ..+...|...|+++.-. ++.+++.+.+++..+|+||- +-+-+-++.++.+..
T Consensus 29 G~r~liVtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~pt~~~v~~~~~~~~~~~~D~Iia---vGGGS~iD~AKaia~ 105 (366)
T PRK09423 29 GKRALLIADEFVLGIVGDTVEASLKDAGLDVVFEVFNGECSDNEIDRLVAIAEENGCDVIIG---IGGGKTLDTAKAVAD 105 (366)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCHHHHHHHHHHHH
T ss_conf 99589998952899899999999986798699973389999999999999998649998999---378388777999999
Q ss_pred HCCCCCEEEE
Q ss_conf 5899859999
Q gi|254780312|r 71 LDPDLKVMFI 80 (122)
Q Consensus 71 ~~~~~pii~~ 80 (122)
...+|+|.+
T Consensus 106 -~~~~P~i~I 114 (366)
T PRK09423 106 -YLGVPVVIV 114 (366)
T ss_pred -HCCCCEEEE
T ss_conf -828997995
No 192
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=63.53 E-value=14 Score=18.57 Aligned_cols=63 Identities=17% Similarity=0.378 Sum_probs=47.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE--E-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6999759989999999999988989--9-9999979999999718998999983655999799999999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYE--V-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~--v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|.-||-++......+..|...|+. | ....||..++. .+.+||.|++....+...- .++++++
T Consensus 99 ~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~--~~apfD~Iiv~aa~~~iP~-~l~~QL~ 164 (205)
T PRK13944 99 KVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--KHAPFDAIIVTAAASTIPS-ALVRQLK 164 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC--CCCCCCEEEEEEECCCCCH-HHHHHCC
T ss_conf 1799953699999999999985986330679765565774--3498048999850776899-9998548
No 193
>PRK06482 short chain dehydrogenase; Provisional
Probab=63.15 E-value=14 Score=18.53 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEE--EEEECCCCCHH-HHHHHHHHHCCCCC
Q ss_conf 986699975998999999999998898999999979999999718-998999--98365599979-99999998589985
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLL--TDIVMPEMDGI-ELARRATELDPDLK 76 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii--~D~~mP~~dG~-el~~~ir~~~~~~p 76 (122)
|+|.+||---...+-..+...|-+.|+.|..+..-.+.++.+.+. +-.+.+ +|+. +.+.. ++.+++.+....+=
T Consensus 1 M~Kv~lITGaSsGiG~ala~~l~~~G~~Vi~t~R~~~~l~~l~~~~~~~~~~~~~Dvt--~~~~v~~~v~~~~~~~G~iD 78 (276)
T PRK06482 1 MTKTWFITGASSGFGRGLTERLLARGDRVAATVRRPDALDDLKARYGERLWVLQLDVT--DTAAVRAVVDRAFAELGRID 78 (276)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECC--CHHHHHHHHHHHHHHCCCCC
T ss_conf 9978999158659999999999988998999978989999999866995799995379--99999999999999809987
Q ss_pred EEEE-ECC
Q ss_conf 9999-437
Q gi|254780312|r 77 VMFI-TGF 83 (122)
Q Consensus 77 ii~~-s~~ 83 (122)
+++- .|+
T Consensus 79 vLVNNAG~ 86 (276)
T PRK06482 79 VVVSNAGY 86 (276)
T ss_pred EEEECCCC
T ss_conf 88746877
No 194
>PRK13120 consensus
Probab=62.89 E-value=14 Score=18.50 Aligned_cols=48 Identities=17% Similarity=0.111 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 99999999858998599994379------7899999997699869976979899
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSKPFHLRD 109 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~KP~~~~~ 109 (122)
+++++++|....++|+++|+-++ ......++.+.|++++|.--...++
T Consensus 86 l~~v~~~r~~~~~~PivlM~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpDLP~EE 139 (285)
T PRK13120 86 LELVADFRRDDSVTPVVLMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEE 139 (285)
T ss_pred HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHH
T ss_conf 999999873489888898610549999879999999998398779647999799
No 195
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=62.43 E-value=14 Score=18.45 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=59.8
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 699975998999999999998898999999-9799999997189989999836559997999999998589985999943
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.|++||.|+...+ .++..|+.+.... +-.+.|+.+.=...+.++....= +..-..++..+|+.+|..++|..+.
T Consensus 22 ~v~vId~d~~~~~----~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~-d~~n~~~~~~~r~~~~~~~iiar~~ 96 (115)
T pfam02254 22 PVVVIDKDPERVE----ELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGD-DEANILIVLLARELNPAKKIIARAN 96 (115)
T ss_pred CEEEEECCHHHHH----HHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCC-HHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 9999999879987----7886698699995688667876192028799996298-4999999999999789980999987
Q ss_pred CCCHHHHHHHHHCCCCEEE
Q ss_conf 7978999999976998699
Q gi|254780312|r 83 FAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~l 101 (122)
+.+......+.|++..+
T Consensus 97 --~~~~~~~l~~~Gad~vi 113 (115)
T pfam02254 97 --DPEHAELLRRLGADEVI 113 (115)
T ss_pred --CHHHHHHHHHCCCCEEE
T ss_conf --89999999976989997
No 196
>PRK06953 short chain dehydrogenase; Provisional
Probab=62.32 E-value=14 Score=18.43 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=45.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 669997599899999999999889899999997999999971899899998365
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m 56 (122)
|++||.--+..+-..+.+.|.+.|+.|.....-.++++.++......+-+|+.=
T Consensus 2 K~~LVTGas~GIG~a~a~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dv~d 55 (222)
T PRK06953 2 KTVLIVGASRGIGLEFVRQYRADGWRVIATARDAAGLAALRALGAEALALDVAD 55 (222)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCC
T ss_conf 999994757299999999999888999999688888999884215177740589
No 197
>PRK13133 consensus
Probab=61.99 E-value=15 Score=18.40 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHHHHHHH----HCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEEC
Q ss_conf 999999998----5899859999437------97899999997699869976
Q gi|254780312|r 62 IELARRATE----LDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~----~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~K 103 (122)
|++++++|+ ..+++|+++||-+ +......++.+.|++++|.-
T Consensus 80 ~~~~~~~r~~~~~~~~~~PivlMtY~N~i~~yG~e~F~~~~~~aGvdGlIip 131 (267)
T PRK13133 80 LELVRKARNGEGCRKITVPILLMGYCNPLIAYGGDCFLADAVKAGVDGLLIP 131 (267)
T ss_pred HHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHHCHHHHHHHHHHCCCCEEECC
T ss_conf 9999999730243466877871564579998477999999998698788778
No 198
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase homolog; InterPro: IPR012815 This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbour-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (IPR012812 from INTERPRO). Members of this family are likely to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.; GO: 0050531 mannosyl-3-phosphoglycerate phosphatase activity, 0005737 cytoplasm.
Probab=61.97 E-value=9.7 Score=19.44 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=22.6
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 99999985899859999437978999999976998
Q gi|254780312|r 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 64 l~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
.++++++ ..+|||++|+.+..|+..=-.+.|..
T Consensus 24 ~l~~L~e--~~iPvI~CtSKTAAEv~~lr~~L~L~ 56 (224)
T TIGR02463 24 WLTRLQE--AGIPVILCTSKTAAEVEALRKALGLT 56 (224)
T ss_pred HHHHHHH--CCCCEEECCCCCHHHHHHHHHHHCCC
T ss_conf 9999997--58976425873078999999984889
No 199
>PRK11574 hypothetical protein; Provisional
Probab=61.19 E-value=10 Score=19.36 Aligned_cols=71 Identities=11% Similarity=0.210 Sum_probs=42.6
Q ss_pred CCCEEEEE--CC-CHHHHHHHHHHHHHCCCEEEEECCHH-----------------HHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf 98669997--59-98999999999998898999999979-----------------999999718998999983655999
Q gi|254780312|r 1 MNQKILLA--ED-DDDMRRFLIKALGKAGYEVVSCNNGA-----------------SAYDKVREEPFSLLLTDIVMPEMD 60 (122)
Q Consensus 1 M~~rILiV--DD-~~~~r~~l~~~L~~~G~~v~~a~~g~-----------------~al~~~~~~~~dlii~D~~mP~~d 60 (122)
|++|+||. |. ++.=.....+.|++.|.+|..++=+. ..++-+....||++++==.||+.+
T Consensus 1 M~kk~LV~lA~GfEEiEa~~~vDvLRRagi~V~~asv~~~~~~~v~gs~gi~i~aD~~l~~v~~~~yD~ivlPGG~~ga~ 80 (196)
T PRK11574 1 MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLTITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAE 80 (196)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCEEECCCCHHHCCCCCCCEEECCCCCHHHH
T ss_conf 98569999169850212518999997779849999853899737994799789578677777825588899178803799
Q ss_pred HHH----HHHHHHHH
Q ss_conf 799----99999985
Q gi|254780312|r 61 GIE----LARRATEL 71 (122)
Q Consensus 61 G~e----l~~~ir~~ 71 (122)
-+. +.+.+|+.
T Consensus 81 ~L~~~~~v~~~lk~~ 95 (196)
T PRK11574 81 CFRDSPLLVETVKQF 95 (196)
T ss_pred HHHHCHHHHHHHHHH
T ss_conf 987398999999999
No 200
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=60.85 E-value=15 Score=18.28 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=46.2
Q ss_pred CCCCEEEEE-------EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-CCCC----------------EE
Q ss_conf 899899998-------36559997999999998589985999943797899999997-6998----------------69
Q gi|254780312|r 45 EPFSLLLTD-------IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNA-PKNA----------------KV 100 (122)
Q Consensus 45 ~~~dlii~D-------~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~-~g~~----------------~~ 100 (122)
..+-+|.+| |.=---+-|.-+-.+|+..|.+||+.+||..+.....+..+ +... ..
T Consensus 132 ~~~~~iAvDEAHCiSqWGHDFR~~Y~~LG~Lk~~fP~vP~~ALTATA~~~~~~Di~~~L~l~~p~~~~~SFdRPNl~y~v 211 (497)
T TIGR00614 132 KGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRILNLKNPQVFITSFDRPNLYYEV 211 (497)
T ss_pred CCCEEEEEECEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEE
T ss_conf 49669998321543588887407999965788854887436434057867899999872213662464046687630340
Q ss_pred EECCCCHHHHHHHHHHHHH
Q ss_conf 9769798999999999960
Q gi|254780312|r 101 LSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 101 l~KP~~~~~L~~~i~~~l~ 119 (122)
..|+-+++....-+.+.+.
T Consensus 212 ~~K~~n~~~~~~dl~~f~~ 230 (497)
T TIGR00614 212 RRKTSNTKKILEDLLRFIV 230 (497)
T ss_pred ECCCCCHHHHHHHHHHHHH
T ss_conf 0578970258999999987
No 201
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=60.76 E-value=15 Score=18.27 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=66.7
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999988989999--9997999999971899899998365599979-----999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-..||.|.. ..|..-|-++..-+ -..+|=+.=|--+|. ..++.|++.. ++|+|+=-|.+.....
T Consensus 113 ~Aae~Lv~eGF~VlpY~~~D~v~akrLed~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~A 189 (246)
T pfam05690 113 KAAEILVKEGFTVLPYTTDDPVLARRLEEAG--CAAVMPLGAPIGSGLGLRNPENLRIIIEEA-DVPVIVDAGIGTPSDA 189 (246)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHH
T ss_conf 9999999789989886179989999998759--849862244013688868999999999967-9988984898967889
Q ss_pred HHHHHCCCCEEEEC-----CCCHHHHHHHHHH
Q ss_conf 99997699869976-----9798999999999
Q gi|254780312|r 90 PDSNAPKNAKVLSK-----PFHLRDLVNEVNR 116 (122)
Q Consensus 90 ~~~~~~g~~~~l~K-----P~~~~~L~~~i~~ 116 (122)
.++++.|++..|.- --+|-...++++.
T Consensus 190 a~aMElG~DaVLvNTAIA~A~dPv~MA~A~~~ 221 (246)
T pfam05690 190 AQAMELGADAVLLNTAIARAKDPVAMARAFKL 221 (246)
T ss_pred HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf 99997456777730677737998999999999
No 202
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=60.68 E-value=15 Score=18.26 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=46.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH---HHHHHHHHHC-CCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 8669997599899999999999889899999997---9999999718-99899998365599979999999985899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---ASAYDKVREE-PFSLLLTDIVMPEMDGIELARRATELDPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g---~~al~~~~~~-~~dlii~D~~mP~~dG~el~~~ir~~~~~ 74 (122)
.||+.|.-|++.....++.+..+.|.+|..+.+. .+.++.+... ..+.+++| +.|-+|+.+.+++..|+
T Consensus 288 GKkv~i~~g~~~~~~~~~~~~~ElGmevv~~~~~~~~~~~~e~~~~~~~~~~~~v~----~~~~~e~~~~i~~~~pD 360 (415)
T cd01977 288 GKKVCIWTGGPKLWHWTKVIEDELGMQVVAMSSKFGHQEDFEKVIARGGEGTIYID----DPNELEFFEILEMLKPD 360 (415)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEE----CCCHHHHHHHHHHCCCC
T ss_conf 99899975855899999999986685899960545887899999974788809986----89899999999736999
No 203
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=60.25 E-value=7.6 Score=20.10 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=44.0
Q ss_pred CCCEE-EEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 98669-99759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 1 MNQKI-LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 1 M~~rI-LiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|++.+ ++|||.|.+..-++..+++.||-+++-+-|. .+.+++==+-+..++ |...+-+-+|+.++-+.++=
T Consensus 1 M~HtiSvLVen~pGVL~RVaGLFsrRGyNI~SL~Vg~-------te~~~~SRmTivv~g-d~~~ieQi~kQL~KLidVik 72 (76)
T PRK06737 1 MSHTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNE-------RDTSGVSEMKLTAVC-TENEATLLVSQLKKLINVLQ 72 (76)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEECC-------CCCCCCEEEEEEEEC-CCHHHHHHHHHHHCCCCEEE
T ss_conf 9358999981787688987778621665711256746-------679982079999977-81349999999850546699
Q ss_pred E
Q ss_conf 9
Q gi|254780312|r 80 I 80 (122)
Q Consensus 80 ~ 80 (122)
+
T Consensus 73 V 73 (76)
T PRK06737 73 V 73 (76)
T ss_pred E
T ss_conf 7
No 204
>PRK05693 short chain dehydrogenase; Provisional
Probab=60.14 E-value=16 Score=18.20 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=55.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998365599979-999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii~~ 80 (122)
|.|||.--+..+-..+...|.+.||+|..+.--.+.++.+.+..+..+-+|+.=+ +.. ++.+++.+....+-+++-
T Consensus 2 KvvlITGassGIG~alA~~la~~G~~V~~~~R~~~~l~~l~~~~~~~~~~Dvtd~--~~i~~~~~~~~~~~g~iDiLVN 78 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAGFTAVQLDVNDG--AALARLAEELEAEHQGLDVLIN 78 (274)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEECCCH--HHHHHHHHHHHHHCCCCCEEEE
T ss_conf 9899948885899999999998799999997999999999848991899846998--9999999999997299768998
No 205
>PRK00208 thiG thiazole synthase; Reviewed
Probab=59.93 E-value=16 Score=18.18 Aligned_cols=83 Identities=17% Similarity=0.113 Sum_probs=61.3
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999988989999--9997999999971899899998365599979-----999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-+.||.|.. ..|..-|-++-.-+ -..+|=|.=|--+|. ..++.|++.. ++|+|+=-|.+.....
T Consensus 115 ~Aae~Lv~eGF~VlpY~~~D~v~akrLe~~G--c~avMPlgsPIGSg~Gl~n~~~l~~i~e~~-~vPvIVDAGiG~pS~A 191 (256)
T PRK00208 115 KAAEILVKEGFVVLPYCTDDPVLAKRLEEAG--CAAVMPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIVDAGIGTPSDA 191 (256)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHH
T ss_conf 9999999889989786788989999999749--534520456434798879999999999867-9988985788976678
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999769986997
Q gi|254780312|r 90 PDSNAPKNAKVLS 102 (122)
Q Consensus 90 ~~~~~~g~~~~l~ 102 (122)
.++++.|++..|.
T Consensus 192 a~AMElG~DaVL~ 204 (256)
T PRK00208 192 AQAMELGADAVLL 204 (256)
T ss_pred HHHHHCCCCEEEH
T ss_conf 9998625543235
No 206
>PRK13135 consensus
Probab=59.54 E-value=16 Score=18.14 Aligned_cols=41 Identities=12% Similarity=0.205 Sum_probs=22.0
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC------HHHHHHHHHCCCCEEEEC
Q ss_conf 999999998589985999943797------899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAA------VALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~------~~~~~~~~~~g~~~~l~K 103 (122)
+++++++|+ .+++|+++|+-++. .....++.+.|++++|.-
T Consensus 82 ~~~~~~~r~-~~~~PivlM~Y~N~i~~yG~e~F~~~~~~~GvdGlIip 128 (267)
T PRK13135 82 LAMVRSVRR-RCQVPIVLMGYYNPIFAYGLERFAADAAAAGVDGVLLV 128 (267)
T ss_pred HHHHHHHHC-CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEECC
T ss_conf 999998633-58998899842309988468999999997499747637
No 207
>KOG0189 consensus
Probab=59.40 E-value=14 Score=18.47 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999988989999999799999997-----18998999983655999799999999858998599994
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g~~al~~~~-----~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
-.+++...+...|....++.+|.+++.++. ..+|-++++|-.--.-.-+.+..++.+.+++++|=++-
T Consensus 34 P~eIm~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~ 106 (261)
T KOG0189 34 PQEIMDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYF 106 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 8999999999721489998646450379999987399961699533444858878999998754865789975
No 208
>PRK13113 consensus
Probab=59.28 E-value=16 Score=18.11 Aligned_cols=44 Identities=5% Similarity=0.138 Sum_probs=28.3
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCC------HHHHHHHHHCCCCEEEECCC
Q ss_conf 999999998589985999943797------89999999769986997697
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAA------VALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~------~~~~~~~~~~g~~~~l~KP~ 105 (122)
+++++++|+..+++|+++||-++. .....++.+.|++++|.--.
T Consensus 82 ~~~v~~~r~~~~~~PivlM~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDL 131 (263)
T PRK13113 82 LDMVRAFRKEDDTTPIVMMGYYNPIYSRGVDRFLAEAKEAGIDGLIVVDL 131 (263)
T ss_pred HHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 99999751238998889983136898856999999987779436971799
No 209
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=59.15 E-value=16 Score=18.10 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred HHHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 999999988989999--9997999999971899899998365599979-----999999985899859999437978999
Q gi|254780312|r 17 FLIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 17 ~l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
-..+.|-+.||.|.. ..|.--|-++-.-+ -..+|=+.=|--+|. ..++.|++. .++|+|+=-|.+....+
T Consensus 189 ~Aae~Lv~eGF~VlpY~~dDpv~akrLed~G--c~avMPlgsPIGSg~Gi~n~~~i~~i~e~-~~vpvivDAGiG~pS~A 265 (327)
T PRK11840 189 KAAEVLVKEGFQVMVYCSDDPIAAKRLEDAG--AVAVMPLGAPIGSGLGIQNPYTIRLIVEG-AKVPVLVDAGVGTASDA 265 (327)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHCC--CEEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHH
T ss_conf 9999999789889887169868999998759--83886224523478886899999999973-69978995798987899
Q ss_pred HHHHHCCCCEEEE-----CCCCHHHHHHHHHHH
Q ss_conf 9999769986997-----697989999999999
Q gi|254780312|r 90 PDSNAPKNAKVLS-----KPFHLRDLVNEVNRL 117 (122)
Q Consensus 90 ~~~~~~g~~~~l~-----KP~~~~~L~~~i~~~ 117 (122)
..+++.|++..|. +--+|-...++++.+
T Consensus 266 ~~aMElG~daVL~NTAiA~a~~Pv~MA~A~~~a 298 (327)
T PRK11840 266 AVAMELGCDGVLMNTAIAEAKNPILMARAMKLA 298 (327)
T ss_pred HHHHHCCCCEEEHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999863666666336767269979999999999
No 210
>PRK10310 galactitol-specific PTS system component IIB; Provisional
Probab=59.13 E-value=16 Score=18.10 Aligned_cols=79 Identities=15% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCCEEEEECC-----CHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 9866999759-----9899999999999889899999-997999999971899899998365599979999999985899
Q gi|254780312|r 1 MNQKILLAED-----DDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD-----~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~ 74 (122)
|+|||||+=- +..+.+-+.+++.+.|+.+... .+-.|.-.. ...+|++++-...|. ...+
T Consensus 1 MkKkIlVACGsGIATSTvva~kv~~~~~e~gi~v~i~Q~~i~ev~~~--~~~~DlivtTt~~~~------------~~g~ 66 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETY--MDGVHLICTTARVDR------------SFGD 66 (94)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHC--CCCCCEEEEECCCCC------------CCCC
T ss_conf 99559998588375999999999999998598068999747875541--689778999225377------------6588
Q ss_pred CCEE----EEECCCCHHHHHHHH
Q ss_conf 8599----994379789999999
Q gi|254780312|r 75 LKVM----FITGFAAVALNPDSN 93 (122)
Q Consensus 75 ~pii----~~s~~~~~~~~~~~~ 93 (122)
+|+| ++||.+......+-.
T Consensus 67 iPvi~g~~fLTGiG~d~~~~~Il 89 (94)
T PRK10310 67 IPLVHGMPFVSGVGIEALQNKIL 89 (94)
T ss_pred CCEEECCCCCCCCCHHHHHHHHH
T ss_conf 87796342000378899999999
No 211
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=58.65 E-value=17 Score=18.05 Aligned_cols=83 Identities=16% Similarity=0.094 Sum_probs=60.8
Q ss_pred HHHHHHHCCCEEEE--ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-----HHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 99999988989999--9997999999971899899998365599979-----9999999858998599994379789999
Q gi|254780312|r 18 LIKALGKAGYEVVS--CNNGASAYDKVREEPFSLLLTDIVMPEMDGI-----ELARRATELDPDLKVMFITGFAAVALNP 90 (122)
Q Consensus 18 l~~~L~~~G~~v~~--a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-----el~~~ir~~~~~~pii~~s~~~~~~~~~ 90 (122)
-.+.|-+.||.|.. ..|.--|-.+..- --..+|-+.=|--+|. ..++.|++.. ++|+|+=-|.+......
T Consensus 122 Aae~Lv~eGF~VlPY~~dD~v~arrLee~--GcaavMPl~aPIGSg~G~~n~~~l~iiie~a-~VPviVDAGiG~pSdAa 198 (262)
T COG2022 122 AAEQLVKEGFVVLPYTTDDPVLARRLEEA--GCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA-DVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHHHCCCEEEECCCCCHHHHHHHHHC--CCEEECCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHH
T ss_conf 99999867988850368878999999864--9668633566566786757889999999738-99889867989766889
Q ss_pred HHHHCCCCEEEEC
Q ss_conf 9997699869976
Q gi|254780312|r 91 DSNAPKNAKVLSK 103 (122)
Q Consensus 91 ~~~~~g~~~~l~K 103 (122)
++++.|++..|.-
T Consensus 199 ~aMElG~DaVL~N 211 (262)
T COG2022 199 QAMELGADAVLLN 211 (262)
T ss_pred HHHHHCCCEEEHH
T ss_conf 9986055432325
No 212
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=58.46 E-value=17 Score=18.03 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=51.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEE-E-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 98669997599899999999999889899-9-999979999999718998999983655999799999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEV-V-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v-~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
|.++|.-||-++......+..|...|+.- . ...||..++. ...+||.|++.-..+...- .+++++ .+.-.+|
T Consensus 99 l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~--~~~pfD~Iii~~a~~~~P~-~l~~qL---~~gGrLV 172 (213)
T PRK00312 99 LVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWP--AYAPFDRILVTAAAPEIPR-ALLDQL---AEGGILV 172 (213)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCHHHHH-HHHHHC---CCCCEEE
T ss_conf 629289994289999999999998499876999688766787--6697248999843412259-999845---3297999
Q ss_pred EEEC
Q ss_conf 9943
Q gi|254780312|r 79 FITG 82 (122)
Q Consensus 79 ~~s~ 82 (122)
+..+
T Consensus 173 ~Pig 176 (213)
T PRK00312 173 APIG 176 (213)
T ss_pred EEEC
T ss_conf 9980
No 213
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=57.63 E-value=17 Score=17.94 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=38.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH------HHHCCCCEEE
Q ss_conf 8669997599899999999999889899999997999999------9718998999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK------VREEPFSLLL 51 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~------~~~~~~dlii 51 (122)
+.|+||.-=-.-..+-++.+|.+.|++|.=-.|--++++. ++.+.||+++
T Consensus 446 ~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlV 501 (657)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLV 501 (657)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 97699995459899999999996798079962666188999999998588875897
No 214
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=57.58 E-value=17 Score=17.94 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=11.6
Q ss_pred ECCHHHHHHHHHHCCCCEEEEEE
Q ss_conf 99979999999718998999983
Q gi|254780312|r 32 CNNGASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 32 a~~g~~al~~~~~~~~dlii~D~ 54 (122)
|.+|.-|++.+..+.-.++++|.
T Consensus 52 aGSGslglEAlSRGA~~v~fvE~ 74 (181)
T pfam03602 52 AGSGALGLEALSRGASSVVFVEK 74 (181)
T ss_pred CCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 87269899999769988999969
No 215
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=57.29 E-value=18 Score=17.91 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=12.4
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEE
Q ss_conf 759989999999999988989999
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVVS 31 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~~ 31 (122)
.-++.....-+.+.|-+.|+++.+
T Consensus 11 r~~~~~~a~~~~~al~~~Gi~~iE 34 (190)
T cd00452 11 RGDDAEDALALAEALIEGGIRAIE 34 (190)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 779999999999999986998899
No 216
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=57.15 E-value=18 Score=17.89 Aligned_cols=73 Identities=16% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 98999999979999999718998999983655-99979999999985899859999437978999999976998699
Q gi|254780312|r 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 26 G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
||.-.+..+..++++.+++..-.++++|+.-- .++|++ .+++..++.|+|.-=|.+..+...+..+.|+++.+
T Consensus 136 gw~~~~~~~~~~~~~~~~~~~~~ii~tdI~~dGt~~G~~---~~~~~~~~~~iiasGGv~s~~Dl~~l~~~g~~gvi 209 (228)
T PRK04128 136 GWLEESSIKVEDAYKMLRNYVNRFIYTSIERDGTLTGIE---NIERFWGDEEFIYAGGVSSIEDVKKLAEIGFSGAI 209 (228)
T ss_pred CCEECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHH---HHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEE
T ss_conf 848889988999999998638453763126543003889---99986168968987898999999999967998999
No 217
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458; InterPro: IPR006355 These sequences are all members of the IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. .
Probab=56.86 E-value=18 Score=17.86 Aligned_cols=54 Identities=26% Similarity=0.461 Sum_probs=42.4
Q ss_pred CHHHHHHHHHHHHHCCCEEEE---ECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHH
Q ss_conf 989999999999988989999---99979999999718--9989999836559997999
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS---CNNGASAYDKVREE--PFSLLLTDIVMPEMDGIEL 64 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~---a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el 64 (122)
....++-+...|++.||.|.+ ..+.-.|-+++++. +|.|++-|--+|+-||++.
T Consensus 48 ~~~S~~~l~~rLqrLgfdisE~ev~tpapaa~q~l~e~~lRP~Llv~D~vl~~FdgIdT 106 (258)
T TIGR01458 48 KKESKRDLVERLQRLGFDISEEEVITPAPAAAQLLKEKKLRPYLLVDDDVLEEFDGIDT 106 (258)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCC
T ss_conf 62147999999877077321442106778999999746899516777685532575667
No 218
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=56.80 E-value=18 Score=17.86 Aligned_cols=70 Identities=14% Similarity=0.195 Sum_probs=49.2
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699975998----999999999998898999999-------97999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
|||-++.+|. .....+...+...|.+|.... |=..-+..+++..||+|++ ..++-++..++++.++.
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~ki~~a~pD~v~~--~~~g~~~~~~~~q~~~~ 211 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKIKAAKPDVVVS--TVNGDSNVAFFKQLKAA 211 (348)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHHH
T ss_conf 8799991685134899999999999859989999813799756799999999769999999--47651248999999981
Q ss_pred CCC
Q ss_conf 899
Q gi|254780312|r 72 DPD 74 (122)
Q Consensus 72 ~~~ 74 (122)
.-+
T Consensus 212 G~~ 214 (348)
T cd06355 212 GIT 214 (348)
T ss_pred CCC
T ss_conf 787
No 219
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=56.44 E-value=18 Score=17.82 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=49.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHH----------HHHHHHH-
Q ss_conf 66999759989999999999988989999999799999997189989999836559997999----------9999985-
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL----------ARRATEL- 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el----------~~~ir~~- 71 (122)
++|.|||=...+...++..|++.|+++....+.++.. ..|.++ +|+..-|.- .+.|++.
T Consensus 2 ~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~------~AD~li----LPGVGaf~~am~~L~~~gl~~~i~~~~ 71 (204)
T COG0118 2 MMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEIL------KADKLI----LPGVGAFGAAMANLRERGLIEAIKEAV 71 (204)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECCHHHHH------HCCEEE----ECCCCCHHHHHHHHHHCCHHHHHHHHH
T ss_conf 7899997286359999999997598069816988971------088878----669788899999888636699999997
Q ss_pred CCCCCEE-EEECC
Q ss_conf 8998599-99437
Q gi|254780312|r 72 DPDLKVM-FITGF 83 (122)
Q Consensus 72 ~~~~pii-~~s~~ 83 (122)
....|++ ++-|+
T Consensus 72 ~~~kP~LGIClGM 84 (204)
T COG0118 72 ESGKPFLGICLGM 84 (204)
T ss_pred HCCCCEEEEEHHH
T ss_conf 5599779981757
No 220
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=56.35 E-value=18 Score=17.81 Aligned_cols=101 Identities=17% Similarity=0.214 Sum_probs=67.2
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---999999999998898999999-------97999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ .|++ .....+...++..|.++.... |-...+..+++..+|.|++ ..+.-++..+++++++.
T Consensus 136 k~v~i~~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~~~~~d~s~~v~~l~~~~~d~v~~--~~~~~~~~~~~~~~~~~ 213 (340)
T cd06349 136 KKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIIL--ISYYNDGAPIARQARAV 213 (340)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEE--ECCCCHHHHHHHHHHHC
T ss_conf 3799983686177899999999999749969998625866675799999998669999999--15753599999999976
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 8998599994379789999999769986997697
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
..+.+++..++.........+...-..-|..-++
T Consensus 214 G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 247 (340)
T cd06349 214 GLDIPVVASSSVYSPKFIELGGDAVEGVYTPTAF 247 (340)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECC
T ss_conf 9997099854767878887527875886999624
No 221
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=56.20 E-value=18 Score=17.80 Aligned_cols=76 Identities=20% Similarity=0.145 Sum_probs=48.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-----CEEE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHHH
Q ss_conf 669997599899999999999889-----8999-9999799999997189989999836559997-----9999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-----YEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-----~~v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~~ 71 (122)
++|-+||=|+.+-++.++.|.... =+|. ...||.+.++.. ...||+||+|..=|.--+ .++.+.+++.
T Consensus 100 ~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~-~~~yDvII~D~~DP~~~~~~Lfs~eFy~~~~~~ 178 (240)
T pfam01564 100 EKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDY-LVKFDVIIVDSTDPVGPAENLFSKEFYDLLKRA 178 (240)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 3899975788999999998798524347985599981689999857-254458999589976533444229999999986
Q ss_pred CCCCCEEE
Q ss_conf 89985999
Q gi|254780312|r 72 DPDLKVMF 79 (122)
Q Consensus 72 ~~~~pii~ 79 (122)
-..=-+++
T Consensus 179 L~~~Gi~v 186 (240)
T pfam01564 179 LKEDGVFV 186 (240)
T ss_pred CCCCCEEE
T ss_conf 59997899
No 222
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=56.17 E-value=18 Score=17.80 Aligned_cols=101 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred CEE-EEECCC---HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669-997599---899999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKI-LLAEDD---DDMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rI-LiVDD~---~~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+|+ +|.+|+ ......+...+++.|.++... .|=...+..+++..||+|++ ...+-++..++++.++.
T Consensus 136 kkva~i~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~--~~~~~~~~~~~~q~~~~ 213 (334)
T cd06327 136 KKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVL--ANAGADTVNAIKQAAEF 213 (334)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHC
T ss_conf 8799995374566999999999999659879999962899755689998877559999999--16654799999999974
Q ss_pred CCCCCEEEEECCCCHHHHHH-HHHCCCCEEEECCC
Q ss_conf 89985999943797899999-99769986997697
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPD-SNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~-~~~~g~~~~l~KP~ 105 (122)
....++.+.++......... +....-.-|..-||
T Consensus 214 G~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (334)
T cd06327 214 GLTKGQKLAGLLLFLTDVHSLGLDAAQGLYLTTAW 248 (334)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHHHCCEEEEECC
T ss_conf 99888678864677799987527861857997056
No 223
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=55.91 E-value=18 Score=17.77 Aligned_cols=104 Identities=11% Similarity=0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEE---------CCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 89999999999988989999-999799999997189989999836---------55999799999999858998599994
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIV---------MPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~---------mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
....+++..+=++.|.-+.. .++-++|+....-+ +|+|=+-+. .+....|+|++++.+. ..|+|.=-
T Consensus 105 ~~~~~~i~~i~~~~~~l~MAD~st~eea~~A~~~G-~D~V~TTLsGYT~~t~~~~~~~pD~~lv~~l~~~--~~pvIaEG 181 (222)
T PRK01130 105 ETLAELVKRIKEKPGQLLMADCSTLEEGLAAAKLG-FDFIGTTLSGYTEYTEGETPEEPDFALLKELLKA--GCPVIAEG 181 (222)
T ss_pred CCHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHC--CCCEEEEC
T ss_conf 68999999999982987898548899999999849-9999723345676767787899869999999958--99899747
Q ss_pred CCCCHHHHHHHHHCCCCEEEECC-C-CHHHHHHHHHHHH
Q ss_conf 37978999999976998699769-7-9899999999996
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKP-F-HLRDLVNEVNRLL 118 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP-~-~~~~L~~~i~~~l 118 (122)
.+...+...++++.|+...+.=- + +|+.+-.+..+.+
T Consensus 182 ri~tPe~a~~al~~GA~aVvVGsAITrP~~IT~~F~~ai 220 (222)
T PRK01130 182 RINTPEQAKKALELGAHAVVVGSAITRPEEITKWFVDAL 220 (222)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 989999999999849989998975479899999999997
No 224
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=55.79 E-value=18 Score=17.82 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=47.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 699975998999999999998898999--999979999999718998999983655999799999999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|.-+|.++...+..+..|...|+.=. ...||.+++. ...+||.|++....|..- -.++++++
T Consensus 100 ~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~--~~apfD~Iiv~aa~~~iP-~~l~~qL~ 164 (205)
T pfam01135 100 RVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWP--EFAPYDAIHVGAAAPEIP-EALIDQLK 164 (205)
T ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--CCCCCCEEEEEEECCCCC-HHHHHHCC
T ss_conf 699983589999999999998488865898456455883--339805899975067688-99999628
No 225
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=55.73 E-value=12 Score=18.89 Aligned_cols=65 Identities=14% Similarity=0.286 Sum_probs=50.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989-99-9999799999997189989999836559997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.+|.=||-++......+..|+..||. |. ...||..++ -...|||.|++-..-|+..- .++++++.
T Consensus 101 G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~--pe~APYD~IIVTAaa~~IP~-aLldQLk~ 167 (317)
T PRK13943 101 GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV--PEFSPYDVIFVTVGVDEVPE-TWFTQLKE 167 (317)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCC--CCCCCCCEEEEEECCCCCCH-HHHHHCCC
T ss_conf 759999867999999999999779986499979988888--66799778999852764899-99996185
No 226
>PRK03612 spermidine synthase; Provisional
Probab=55.33 E-value=19 Score=17.71 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=48.0
Q ss_pred CEEEEECCCHHHHHHHHHH--HHHCCC------EEEE-ECCHHHHHHHHHH--CCCCEEEEEEECCCCCH------HHHH
Q ss_conf 6699975998999999999--998898------9999-9997999999971--89989999836559997------9999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKA--LGKAGY------EVVS-CNNGASAYDKVRE--EPFSLLLTDIVMPEMDG------IELA 65 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~--L~~~G~------~v~~-a~~g~~al~~~~~--~~~dlii~D~~mP~~dG------~el~ 65 (122)
++|-+||=|+.+-+..++. |.+.+. ++.. .. +|+.++++ +.||+|++|.-=|...+ -|+.
T Consensus 318 e~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~---Da~~~l~~~~~~yDvIi~D~pdP~~~~~~~LYs~eFY 394 (516)
T PRK03612 318 EQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVND---DAFNWLRKLPETFDAIIVDLPDPSNPALGKLYSVEFY 394 (516)
T ss_pred CEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEH---HHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCHHHH
T ss_conf 6378995188999999857214444123234996489853---7899998688878889981899799522467539999
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 999985899859999
Q gi|254780312|r 66 RRATELDPDLKVMFI 80 (122)
Q Consensus 66 ~~ir~~~~~~pii~~ 80 (122)
+.+|+.-.+--+++.
T Consensus 395 ~~~~~~L~~~G~~v~ 409 (516)
T PRK03612 395 RLLKRRLAPDGLLVV 409 (516)
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999984499958999
No 227
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=55.18 E-value=19 Score=17.70 Aligned_cols=41 Identities=7% Similarity=0.170 Sum_probs=21.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 99999999858998599994379------7899999997699869976
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
+++++++|+. .++|+++|+-++ ......++.+.|++++|.-
T Consensus 65 ~~~~~~~r~~-~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv~Gviip 111 (242)
T cd04724 65 LELVKEIRKK-NTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP 111 (242)
T ss_pred HHHHHHHHHC-CCCCEEEEEECHHHHHHCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999998734-7988899984457665289999999997599758706
No 228
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=54.81 E-value=19 Score=17.66 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+...+...+++.||.+..+.++ .++++.+.++.+|-+|+ .|...--+..+.+++ .++|++++
T Consensus 16 ~~~~~ie~~~~~~Gy~~~i~~s~~d~~~e~~~i~~l~~~~vdGiIi---~~~~~~~~~~~~l~~--~~iP~V~~ 84 (268)
T cd06273 16 RVIQAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLAL---IGLDHSPALLDLLAR--RGVPYVAT 84 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 9999999999985999999958999899999999999659999999---189999899999997--59989998
No 229
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=54.61 E-value=19 Score=17.64 Aligned_cols=62 Identities=15% Similarity=0.185 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+.+.+...+++.||.+..+.+. .+.++.+.++.+|-+|+- |....-+..+.+++. .+|++++
T Consensus 17 ~~~gie~~~~~~Gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIl~---~~~~~~~~~~~l~~~--~iPvV~i 84 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILL---ATTITDEHREAIKKL--NVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999869989999789998999999999995699989993---777775999999966--9999995
No 230
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=54.56 E-value=19 Score=17.64 Aligned_cols=53 Identities=13% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 799999999858998599994379789999999769986997697989999999999603
Q gi|254780312|r 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 61 G~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|+-+++++ .-.+|+|. |..+. ..+....|.++|+.+|-+.++|.++|.++++.
T Consensus 277 g~~~lEAm---a~G~PvIa-s~~gg---~~e~i~~g~~G~lv~~~d~~~la~ai~~ll~d 329 (359)
T cd03823 277 PLVIREAL---AAGVPVIA-SDIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred CHHHHHHH---HCCCCEEE-CCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 47999999---82998998-88998---17560379867998999999999999999849
No 231
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=54.55 E-value=19 Score=17.63 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=59.9
Q ss_pred CEEEEECCC---HHHHHHHHHHHHHCCCEEEEECCHHHHHHH-------HHHCCCCEEEEEEECCCCCHHHHHHHHHH--
Q ss_conf 669997599---899999999999889899999997999999-------97189989999836559997999999998--
Q gi|254780312|r 3 QKILLAEDD---DDMRRFLIKALGKAGYEVVSCNNGASAYDK-------VREEPFSLLLTDIVMPEMDGIELARRATE-- 70 (122)
Q Consensus 3 ~rILiVDD~---~~~r~~l~~~L~~~G~~v~~a~~g~~al~~-------~~~~~~dlii~D~~mP~~dG~el~~~ir~-- 70 (122)
+||.+|--| ..-.+.++.+-+..|..+..+.++.+..+. .+...+|+|+.|-.=-.-.-.++.+++++
T Consensus 29 ~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~ 108 (173)
T cd03115 29 KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIK 108 (173)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 92899974887577999999999974985992277558799999999998756899899978887879999999999998
Q ss_pred --HCCCCCEEEEECCCCHHHHHHHH---H-CCCCE-EEEC
Q ss_conf --58998599994379789999999---7-69986-9976
Q gi|254780312|r 71 --LDPDLKVMFITGFAAVALNPDSN---A-PKNAK-VLSK 103 (122)
Q Consensus 71 --~~~~~pii~~s~~~~~~~~~~~~---~-~g~~~-~l~K 103 (122)
..|+..++++++....+...++. + .+.+. +++|
T Consensus 109 ~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK 148 (173)
T cd03115 109 RVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTK 148 (173)
T ss_pred HHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 6448972157424655065899999987427997899971
No 232
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=54.44 E-value=20 Score=17.62 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=60.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 6699975998999999999998898999999-97999999971899899998365599-979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVREEPFSLLLTDIVMPEM-DGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~~~~dlii~D~~mP~~-dG~el~~~ir~~~~~~pii~~ 80 (122)
.+..++|.|+..-+ .+++.|+++.--+ +-.+-++...-..-.++++-+ |+. +-.++.+.+|+.+|+++|+.-
T Consensus 424 i~~vviD~d~~~V~----~~r~~G~~v~yGDat~~~vL~~AGi~~A~~vViai--~d~~~~~~iv~~~r~~~P~l~I~aR 497 (602)
T PRK03659 424 MRITVLERDISAVN----LMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITC--NEPEDTMKLVELCQQHFPHLHILAR 497 (602)
T ss_pred CCEEEEECCHHHHH----HHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEE--CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99899978679999----99978990897589999999867904058899982--9899999999999987869969998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 43797899999997699869976979
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
+. +.....+..+.|++.++.--|.
T Consensus 498 ar--~~~~~~~L~~~Ga~~vv~Et~e 521 (602)
T PRK03659 498 AR--GRVEAHELLQAGVTQFSRETFS 521 (602)
T ss_pred EC--CHHHHHHHHHCCCCEEECCHHH
T ss_conf 69--7899999997899978662789
No 233
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=54.42 E-value=20 Score=17.62 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=59.7
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH-HHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEE
Q ss_conf 6999759989999999999988989999999799-9999971--899899998365599979999999985--8998599
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS-AYDKVRE--EPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVM 78 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~-al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii 78 (122)
+||+|--.+.....+...+++.|++.....+|.+ .-..+.. ...|+||+=. +.-+-.....+|+. ..++|++
T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~t---d~vsH~~~~~vK~~akk~~~p~v 77 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFT---DCVSHDAMWRVKEEAKKRGIPVV 77 (96)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEEC---CCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 999995855678999999998399899965898733556775058988899971---76687999999999998499789
Q ss_pred EEECCCCHHHHHHH
Q ss_conf 99437978999999
Q gi|254780312|r 79 FITGFAAVALNPDS 92 (122)
Q Consensus 79 ~~s~~~~~~~~~~~ 92 (122)
+..+.+........
T Consensus 78 ~~~s~s~~~l~~~l 91 (96)
T pfam10087 78 FSRSRSLSALERAL 91 (96)
T ss_pred EECCCCHHHHHHHH
T ss_conf 97687499999999
No 234
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=54.29 E-value=14 Score=18.46 Aligned_cols=69 Identities=13% Similarity=0.060 Sum_probs=41.7
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCC------------CCHHHHHHHHHHHCC--CCCEEEEECCC--CHHHHHHHHHCCC
Q ss_conf 9799999997189989999836559------------997999999998589--98599994379--7899999997699
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPE------------MDGIELARRATELDP--DLKVMFITGFA--AVALNPDSNAPKN 97 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~------------~dG~el~~~ir~~~~--~~pii~~s~~~--~~~~~~~~~~~g~ 97 (122)
|..+.-.++.+..-.+.++|++=|+ +.+-++..++.+..| +.|||++-..+ .........+.|.
T Consensus 2 d~a~l~~w~~~~~r~~~llDVR~~~E~~~GHIpGA~~iP~~~L~~~~~~~~~~k~~~ivl~C~~G~RS~~AA~~L~~~G~ 81 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETDHFAPVRGARIVLADDDGVRADMTASWLAQMGW 81 (95)
T ss_pred CHHHHHHHHHCCCCCEEEEECCCHHHHHCCCCCCCEECCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 88999999868997379997998899973888777888899987776542466898399985999879999999998699
Q ss_pred CEEEE
Q ss_conf 86997
Q gi|254780312|r 98 AKVLS 102 (122)
Q Consensus 98 ~~~l~ 102 (122)
..|..
T Consensus 82 ~v~~L 86 (95)
T cd01534 82 EVYVL 86 (95)
T ss_pred CEEEE
T ss_conf 76995
No 235
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=53.70 E-value=20 Score=17.55 Aligned_cols=89 Identities=17% Similarity=0.083 Sum_probs=58.7
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEE---EC----CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---9999999999988989999---99----97999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVS---CN----NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~---a~----~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|++ ...+.+...++..|.++.. .. |-...+..+++..||+|++- ...-++..+++++++.
T Consensus 137 kkvavl~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~ 214 (336)
T cd06326 137 KRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMV--GAYKAAAAFIRALRKA 214 (336)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf 75999935875889999999999997799379999868998777999999984797999992--7827999999999976
Q ss_pred CCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8998599994379789999999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~ 93 (122)
..+.|++..++...........
T Consensus 215 G~~~~~~~~~~~~~~~~~~~~g 236 (336)
T cd06326 215 GGGAQFYNLSFVGADALARLLG 236 (336)
T ss_pred CCCCEEEEECCCCHHHHHHHHH
T ss_conf 9997599856777399999767
No 236
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=53.68 E-value=20 Score=17.55 Aligned_cols=99 Identities=16% Similarity=0.134 Sum_probs=60.9
Q ss_pred EECCCHHHHHHHHH------------HHHHCCCEEEE-----EC-----CHHHHHHHHHHCCCCEEEEEEECCCCCH---
Q ss_conf 97599899999999------------99988989999-----99-----9799999997189989999836559997---
Q gi|254780312|r 7 LAEDDDDMRRFLIK------------ALGKAGYEVVS-----CN-----NGASAYDKVREEPFSLLLTDIVMPEMDG--- 61 (122)
Q Consensus 7 iVDD~~~~r~~l~~------------~L~~~G~~v~~-----a~-----~g~~al~~~~~~~~dlii~D~~mP~~dG--- 61 (122)
+|-||..++++... .|.+.|.+|.. -. --.+|++++.+.++|.++++.-||...-
T Consensus 118 fvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGtkm~ 197 (275)
T COG1856 118 FVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGTKMG 197 (275)
T ss_pred ECCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEECEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCHHCC
T ss_conf 12774899999768863777788999999709425305999731685233387889986079973999998138850105
Q ss_pred ----------HHHHHHHHHHCCCCCEEEEECCC--CHHHHH--HHHHCCCCEEEECCCCH
Q ss_conf ----------99999999858998599994379--789999--99976998699769798
Q gi|254780312|r 62 ----------IELARRATELDPDLKVMFITGFA--AVALNP--DSNAPKNAKVLSKPFHL 107 (122)
Q Consensus 62 ----------~el~~~ir~~~~~~pii~~s~~~--~~~~~~--~~~~~g~~~~l~KP~~~ 107 (122)
..+++..|+..|+ |+++=-..+ ...... .+..+|++ -|++|-+.
T Consensus 198 ~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd-~It~P~~~ 255 (275)
T COG1856 198 NSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVD-RITFPPRG 255 (275)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHCCCC-EEECCCCC
T ss_conf 77976989999999999985899-746741476753678788888871885-04459854
No 237
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=53.33 E-value=20 Score=17.52 Aligned_cols=98 Identities=12% Similarity=0.061 Sum_probs=62.2
Q ss_pred HHHHHHHCCCE-EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE--EECCCCHHHHHHHH
Q ss_conf 99999988989-9999997999999971-89989999836559997999999998589985999--94379789999999
Q gi|254780312|r 18 LIKALGKAGYE-VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF--ITGFAAVALNPDSN 93 (122)
Q Consensus 18 l~~~L~~~G~~-v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~--~s~~~~~~~~~~~~ 93 (122)
+-..|.+.+.- |....+.++|+...+. ..-.+=.+.+.|-.-+.++.++.+++...+.|-+. .-+.-+.+...++.
T Consensus 6 il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~~~~p~~~iGaGTV~~~e~~~~a~ 85 (209)
T PRK06552 6 ILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERYKDDPEVLIGAGTVLDAVTARQAI 85 (209)
T ss_pred HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf 99999979979999728999999999999987998899967897599999999998177998189887274899999999
Q ss_pred HCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 76998699769798999999999
Q gi|254780312|r 94 APKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 94 ~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
..|+. |+.-|....++.+.-++
T Consensus 86 ~aGA~-FiVSP~~~~~v~~~a~~ 107 (209)
T PRK06552 86 LAGAQ-FIVSPSFNRETAKICNR 107 (209)
T ss_pred HCCCC-EEECCCCCHHHHHHHHH
T ss_conf 85998-89769998999999998
No 238
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=52.41 E-value=21 Score=17.43 Aligned_cols=82 Identities=21% Similarity=0.331 Sum_probs=53.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH------HHCCCCEEEE------EEECCCCC---------
Q ss_conf 86699975998999999999998898999999979999999------7189989999------83655999---------
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV------REEPFSLLLT------DIVMPEMD--------- 60 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~------~~~~~dlii~------D~~mP~~d--------- 60 (122)
+.|+||--=-.-+.+-+..+|.+.|.+|.--.|.-++++.. +.+.||+++= .+.+|..+
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADK 525 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADK 525 (663)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCCEEEEEEEECCC
T ss_conf 97299984368889999999986696478642440389999999997577874898501331347886455798860685
Q ss_pred -HH-----HHHHHHHH--HCCCCCEEEEECC
Q ss_conf -79-----99999998--5899859999437
Q gi|254780312|r 61 -GI-----ELARRATE--LDPDLKVMFITGF 83 (122)
Q Consensus 61 -G~-----el~~~ir~--~~~~~pii~~s~~ 83 (122)
|| .|++.|-. ++.+-.+|+....
T Consensus 526 eGFLRse~SLIQtIGRAARN~~GkvIlYAD~ 556 (663)
T COG0556 526 EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (663)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 4443453259999878863579739997101
No 239
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=52.07 E-value=21 Score=17.39 Aligned_cols=102 Identities=16% Similarity=0.208 Sum_probs=62.9
Q ss_pred CEEEEE-CC-CH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 669997-59-98---99999999999889899999-------99799999997189989999836559997999999998
Q gi|254780312|r 3 QKILLA-ED-DD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiV-DD-~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
+||-++ ++ +. .....++..++..|.++... .|-...+..+++..||+|++-. ..-++..++++.++
T Consensus 136 ~~vai~~~~~~~y~~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~i~~i~~~~pD~v~~~~--~~~~~~~~~~q~~~ 213 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPG--YYTEVGLIAKQARE 213 (334)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHH
T ss_conf 7899998469668799999999999975974899971588888769999999865999999936--61679999999997
Q ss_pred HCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 589985999943797899999997699869976979
Q gi|254780312|r 71 LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
..-+.|++..++.................+..-|+.
T Consensus 214 ~G~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~~~~~ 249 (334)
T cd06347 214 LGIKVPILGGDGWDSPKLEEAGGAAAEGVYFTTHFS 249 (334)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEECCC
T ss_conf 699776997446687667765078758879995278
No 240
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.06 E-value=21 Score=17.39 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=59.4
Q ss_pred CEEEEE-CCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 669997-599899999999999889--89999999799999997189989999836559997999999998589985999
Q gi|254780312|r 3 QKILLA-EDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiV-DD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
..||+. |+|+.+-+.+.+..++|| |.+....|...-+..+++ .-+.+-+.|=+.+=-++...|++...+ +++
T Consensus 33 ~gil~~~e~De~v~esv~dVv~rwGG~F~v~~~~nw~~~i~~wk~---gG~vvHLTMYG~~i~dv~~ei~~~~k~--~lv 107 (179)
T COG1303 33 DGILLDGEEDEKVVESVEDVVERWGGPFFVKFGVNWRKVIREWKE---GGIVVHLTMYGLNIDDVIDEIRESKKD--VLV 107 (179)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHC---CCEEEEEEECCCCCHHHHHHHHHCCCC--EEE
T ss_conf 547973764377999999999854997799972238999987404---877999996277630341898746872--799
Q ss_pred EECC
Q ss_conf 9437
Q gi|254780312|r 80 ITGF 83 (122)
Q Consensus 80 ~s~~ 83 (122)
+.|-
T Consensus 108 vVGa 111 (179)
T COG1303 108 VVGA 111 (179)
T ss_pred EECC
T ss_conf 9756
No 241
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=51.55 E-value=22 Score=17.34 Aligned_cols=70 Identities=19% Similarity=0.188 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHCC-CCEEEEEEECC-CCCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE-ECC
Q ss_conf 9799999997189-98999983655-9997--9999999985899859999437978999999976998699-769
Q gi|254780312|r 34 NGASAYDKVREEP-FSLLLTDIVMP-EMDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL-SKP 104 (122)
Q Consensus 34 ~g~~al~~~~~~~-~dlii~D~~mP-~~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l-~KP 104 (122)
+..+.++.+.+.. -.++++|+.-- -+.| +++++++.+ .++.|+|.-=|.+..+.-.+....|+.+.+ -|-
T Consensus 149 ~~~d~~~~~~~~g~~~il~TdI~rDGtl~G~n~el~~~i~~-~~~~pvIaSGGv~sl~Di~~L~~~gv~GvIvGkA 223 (234)
T PRK13587 149 NLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLVK-ATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKA 223 (234)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEEE
T ss_conf 79999999974398789984026657455799999999997-6799999989989999999999889989999975
No 242
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=51.34 E-value=22 Score=17.32 Aligned_cols=57 Identities=11% Similarity=0.224 Sum_probs=45.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 8669997599899999999999889899999997999999971899899998365599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
.|+++||-.+..+-.-++.+|...|.+|..+.+-..-+..... .-|++++-..-|++
T Consensus 36 Gk~vvViGrS~iVG~Pla~lL~~~~atVtichs~T~nl~~~~~-~ADIvI~A~G~p~~ 92 (159)
T pfam02882 36 GKNVVVIGRSNIVGKPLALLLLNANATVTVCHSKTKDLAEITR-EADIVVVAVGKPGL 92 (159)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-CCCEEEEECCCCCC
T ss_conf 8669998887314899999998779989998189999789630-03444231588550
No 243
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=50.95 E-value=22 Score=17.29 Aligned_cols=43 Identities=12% Similarity=0.052 Sum_probs=33.1
Q ss_pred CCCCHH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 599979--99999998589985999943797899999997699869
Q gi|254780312|r 57 PEMDGI--ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 57 P~~dG~--el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
+...|+ .+.+.||+. ..+|++..-+..+.+.++++++.|..++
T Consensus 257 ~~~~g~~~~~a~~ik~~-~~ipvi~vG~i~~~~~ae~~l~~G~aD~ 301 (337)
T PRK13523 257 DVYPGYQVPFAEHIKEH-ANIATGAVGLITTGAQAEEILNNNRADL 301 (337)
T ss_pred CCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCCH
T ss_conf 77875334899999987-6970999838699999999998799479
No 244
>PHA02518 ParA-like protein; Provisional
Probab=50.90 E-value=22 Score=17.28 Aligned_cols=73 Identities=14% Similarity=0.091 Sum_probs=38.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHH--HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 866999759989999999999988--9-89999999799999997--189989999836559997999999998589985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKA--G-YEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~--G-~~v~~a~~g~~al~~~~--~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
.+|||+||=|+.- .....+... + -.+....-+......+. ...||.||.|. |.-.|..+...+.. .+.-
T Consensus 29 G~~VlliD~DpQ~--s~~~w~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~yD~viID~--pp~~~~~~~~al~a--aD~v 102 (211)
T PHA02518 29 GHKVLLVDLDPQG--SSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALRI--ADMV 102 (211)
T ss_pred CCCEEEEECCCCC--CHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCCEEEECC--CCCCHHHHHHHHHH--CCEE
T ss_conf 9948999779996--7889998522689974012136779999997406788899889--99742999999995--8969
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780312|r 77 VMFI 80 (122)
Q Consensus 77 ii~~ 80 (122)
+|.+
T Consensus 103 liP~ 106 (211)
T PHA02518 103 LIPV 106 (211)
T ss_pred EEEC
T ss_conf 9963
No 245
>pfam00982 Glyco_transf_20 Glycosyltransferase family 20. Members of this family belong to glycosyl transferase family 20. OtsA (Trehalose-6-phosphate synthase) is homologous to regions in the subunits of yeast trehalose-6-phosphate synthase/phosphate complex,.
Probab=50.68 E-value=18 Score=17.79 Aligned_cols=42 Identities=19% Similarity=0.499 Sum_probs=27.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 98599994379789999999769986997697989999999999603
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
..-++++|-++. .+.+.+-..++.-|++.+++.++|+++|+.
T Consensus 395 ~~GvLILSefaG-----aa~~L~~gAllVNP~d~~~~a~ai~~AL~M 436 (470)
T pfam00982 395 RKGVLILSEFAG-----AAQSLNDGAILVNPWDIEEVAEAINEALTM 436 (470)
T ss_pred CCCEEEEECCCC-----HHHHHCCCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 995499952403-----176755970898999989999999999759
No 246
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=49.87 E-value=23 Score=17.18 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=30.1
Q ss_pred EEEECCHHHHHHHHHH-CCCCEEEEEEECCCCCHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999997999999971-89989999836559997999999998589-985999943797899999997699869976979
Q gi|254780312|r 29 VVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 29 v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~dG~el~~~ir~~~~-~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
|...++-++|+.+.+. -.-.+=++.+.+-.-.+.|.++.|++..| +.-|=.=| .-+.+...++.+.|++ |+.=|=-
T Consensus 13 Vi~~~~~~~A~~lA~aL~egG~~~~EvTlRT~~A~~aI~~l~~~~P~~~~iGAGT-VL~~~Q~~~A~~AGA~-F~vSPG~ 90 (205)
T TIGR01182 13 VIRIDDVEDALPLAKALIEGGLRVLEVTLRTPVALEAIRALRKEVPKDALIGAGT-VLNPEQLRQAVAAGAQ-FIVSPGL 90 (205)
T ss_pred EEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCEECCCC-CCCHHHHHHHHHCCCC-EEECCCC
T ss_conf 8872678777899999986798089885147216899999997282334871676-4898999999970895-7876978
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780312|r 107 LRDL 110 (122)
Q Consensus 107 ~~~L 110 (122)
..+|
T Consensus 91 ~p~l 94 (205)
T TIGR01182 91 TPEL 94 (205)
T ss_pred CHHH
T ss_conf 8899
No 247
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=49.67 E-value=23 Score=17.16 Aligned_cols=62 Identities=16% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+...+...++..||.+..+.+. .+.++.+.+..+|-+|+- |...--+.++.+++ ..+|+|++
T Consensus 17 ~~~gi~~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vDGiIi~---~~~~~~~~~~~l~~--~~iPvV~i 84 (265)
T cd06299 17 LATAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVV---PHEQSAEQLEDLLK--RGIPVVFV 84 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---ECCCCHHHHHHHHH--CCCCEEEE
T ss_conf 9999999999859989999789998999999999994799999998---06799899999996--69989983
No 248
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=49.58 E-value=23 Score=17.16 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=75.6
Q ss_pred EEEEE----CCCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHCCCCEEEEEEEC---CCCCHHHHHHHHHHHC-
Q ss_conf 69997----5998999999999998898999---99997999999971899899998365---5999799999999858-
Q gi|254780312|r 4 KILLA----EDDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREEPFSLLLTDIVM---PEMDGIELARRATELD- 72 (122)
Q Consensus 4 rILiV----DD~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~~~dlii~D~~m---P~~dG~el~~~ir~~~- 72 (122)
||||+ |-+..=++.++..+...||+|. .+.+++|+-+...++..|+|.+-..= |.. =-++++++|+..
T Consensus 584 rilvaKmGqDGHdrGak~iA~~f~D~GfdV~~~~lfqTPeE~a~~A~e~dvhvigisslaa~h~tL-VP~l~~~Lk~~g~ 662 (715)
T PRK09426 584 RILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTL-VPALIEALKKLGR 662 (715)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCCHHH-HHHHHHHHHHCCC
T ss_conf 699962798721002789998887576068616755899999999997599999982334544212-7999999996499
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCC----CHHHHHHHHHHHH
Q ss_conf 998599994379789999999769986997697----9899999999996
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF----HLRDLVNEVNRLL 118 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~----~~~~L~~~i~~~l 118 (122)
+++||| +-|.--.+......+.|+..+..--- .-.++++.+.+-+
T Consensus 663 ~di~Vv-vGGvIP~~D~~~L~~~GV~~if~Pgt~i~~~a~~~l~~l~~~~ 711 (715)
T PRK09426 663 EDIMVV-VGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLEARL 711 (715)
T ss_pred CCCEEE-ECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 886799-8386887999999976977785899827999999999999863
No 249
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=49.16 E-value=24 Score=17.12 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+...++..||.+..+.+. .+.++.+.++.+|-+|+ .|....-+..+.+++. .+|++.+
T Consensus 16 ~l~~~i~~~~~~~gy~~~i~~s~~~~~~e~~~i~~l~~~~vdGiIi---~~~~~~~~~~~~l~~~--~iPvV~~ 84 (265)
T cd06285 16 TMYEGIEEAAAERGYSTFVANTGDNPDAQRRAIEMLLDRRVDGLIL---GDARSDDHFLDELTRR--GVPFVLV 84 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999986998999979999899999999999569999997---6887998999999967--9978998
No 250
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=48.94 E-value=24 Score=17.10 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=52.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889--899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G--~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+||+-|+|+.+.+.+...-+.|| |++....+.. ..+++. .-+++-+.|=+.+=-+....||+.. -|++++
T Consensus 31 ~~il~~e~D~~v~etv~~V~~rwGG~F~ie~~~~w~---~~~k~~--~G~vVHLTMYG~~i~dvi~~Ir~~~--k~ilVV 103 (339)
T PRK12703 31 SSILVDERDETLENTIKKVVDNFGGSFEIKTGIEWK---SEFKKF--HGIRVHLTMYGRPIEDVIDEIRESG--KDVMVL 103 (339)
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCHH---HHHHHC--CCEEEEEECCCCCHHHHHHHHHHCC--CCEEEE
T ss_conf 754436887678999999997349977997176799---998735--9879998316886578777765128--977999
Q ss_pred ECC
Q ss_conf 437
Q gi|254780312|r 81 TGF 83 (122)
Q Consensus 81 s~~ 83 (122)
.|-
T Consensus 104 VGa 106 (339)
T PRK12703 104 VGS 106 (339)
T ss_pred ECC
T ss_conf 758
No 251
>KOG2550 consensus
Probab=48.67 E-value=24 Score=17.07 Aligned_cols=93 Identities=14% Similarity=0.274 Sum_probs=58.3
Q ss_pred EEEEECCCHHHHHHHHHH--HHHCCC---------------EEEEECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHH
Q ss_conf 699975998999999999--998898---------------999999979999999718998999983655-99979999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKA--LGKAGY---------------EVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELA 65 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~--L~~~G~---------------~v~~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~ 65 (122)
|..||||+-....++++. ....+| -+-+-++.++-++++.+-..|+|++|..=- ..--++++
T Consensus 204 kl~iv~~~gelva~~~rtDl~k~~~yPlask~~~kqll~gAaiGTre~dK~rl~ll~~aGvdvviLDSSqGnS~~qiemi 283 (503)
T KOG2550 204 KLPVVDDKGELVAMLSRTDLMKNRDYPLASKDSTKQLLCGAAIGTRDDDKERLDLLVQAGVDVVILDSSQGNSIYQLEMI 283 (503)
T ss_pred CCCEECCCCCEEEEEEHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHH
T ss_conf 65234367762334333456650278755567541356510136663016778886634886899966888504579999
Q ss_pred HHHHHHCCCCCEE---EEECCCCHHHHHHHHHCCCCEE
Q ss_conf 9999858998599---9943797899999997699869
Q gi|254780312|r 66 RRATELDPDLKVM---FITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 66 ~~ir~~~~~~pii---~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
+.||+.+|++.|| +.|+ +.....+..|++..
T Consensus 284 k~iK~~yP~l~ViaGNVVT~----~qa~nLI~aGaDgL 317 (503)
T KOG2550 284 KYIKETYPDLQIIAGNVVTK----EQAANLIAAGADGL 317 (503)
T ss_pred HHHHHHCCCCEEECCCEEEH----HHHHHHHHCCCCEE
T ss_conf 99986688863431655338----88999987367605
No 252
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=48.55 E-value=24 Score=17.06 Aligned_cols=101 Identities=18% Similarity=0.171 Sum_probs=63.4
Q ss_pred CEEE-EECCCHH---HHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699-9759989---99999999998898999999-------97999999971899899998365599979999999985
Q gi|254780312|r 3 QKIL-LAEDDDD---MRRFLIKALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rIL-iVDD~~~---~r~~l~~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||- +.+|++- ....+...+++.|.++.... +-...+..+++..+|+|++- .+..++..+++++++.
T Consensus 137 ~~vaiv~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~i~~i~~~~~d~v~~~--~~~~~~~~~~~~~~~~ 214 (299)
T cd04509 137 KKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLC--GSGEDAATILKQAAEA 214 (299)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHC
T ss_conf 77999557740679999999999998799799998469999899999999996699999990--7718999999999975
Q ss_pred CC--CCCEEEEECCCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 89--98599994379789999999769986997697
Q gi|254780312|r 72 DP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~--~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
.- ..+++..++.........+....-..+..-|+
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~~~~~~ 250 (299)
T cd04509 215 GLTGGYPILGITLGLSDVLLEAGGEAAEGVLTGTPY 250 (299)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEC
T ss_conf 998897399956767889999788872876999735
No 253
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=48.41 E-value=24 Score=17.05 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=60.6
Q ss_pred CCEEEEECCCH----HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 86699975998----99999999999889899999-------99799999997189989999836559997999999998
Q gi|254780312|r 2 NQKILLAEDDD----DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 2 ~~rILiVDD~~----~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.+++.++.++. .....+...++..|.++... .|-...+..+++..||+|++= ...-+...+++++++
T Consensus 133 ~k~~~~~~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l~~~~pd~V~~~--~~~~~~~~~~k~~~~ 210 (341)
T cd06341 133 TRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITV--LDAAVCASVLKAVRA 210 (341)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHH
T ss_conf 848999935835889999999999997599545787448999877899999985696999990--684789999999997
Q ss_pred HCCCCCEEEEECCCCHHHHHHH
Q ss_conf 5899859999437978999999
Q gi|254780312|r 71 LDPDLKVMFITGFAAVALNPDS 92 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~~~~~~~ 92 (122)
..-+.+++..++..+.......
T Consensus 211 ~G~~~~~~~~~~~~~~~~~~~~ 232 (341)
T cd06341 211 AGLTPKVVLSGTCYDPALLAAP 232 (341)
T ss_pred CCCCCCEEEECCCCCHHHHHHH
T ss_conf 6999718995576788999850
No 254
>PRK08263 short chain dehydrogenase; Provisional
Probab=48.26 E-value=25 Score=17.03 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=54.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHH-HHHHHHHHCCCCCEE
Q ss_conf 986699975998999999999998898999999979999999718-998999983655999799-999999858998599
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE-LARRATELDPDLKVM 78 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii 78 (122)
|+|.+||---...+-..+...|.+.|++|..+..-.+.++.+.+. .-.+......+-+.+..+ +++++.+....+-++
T Consensus 2 ~gKv~lITGassGIG~a~A~~la~~G~~Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDiL 81 (275)
T PRK08263 2 MGKVWFITGASRGFGREWTEAALERGDRVVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKHFGRLDIV 81 (275)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 89989994674399999999999879989999798999999999759967999964899999999999999984998789
Q ss_pred EE
Q ss_conf 99
Q gi|254780312|r 79 FI 80 (122)
Q Consensus 79 ~~ 80 (122)
+-
T Consensus 82 VN 83 (275)
T PRK08263 82 VN 83 (275)
T ss_pred EE
T ss_conf 98
No 255
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=48.18 E-value=25 Score=17.02 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=62.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCC-HHHHHHHHHHHCCCCCEEEE
Q ss_conf 669997599899999999999889899999-9979999999718998999983655999-79999999985899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMD-GIELARRATELDPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~al~~~~~~~~dlii~D~~mP~~d-G~el~~~ir~~~~~~pii~~ 80 (122)
....++|.|+..-+ .+++.|++|.-- .+-.+-++...-..-.++++-+ |+.+ -.++.+.+|+.+|++||+.-
T Consensus 423 i~~vviD~d~~~V~----~~r~~G~~v~yGDat~~~vL~~AGi~~Ar~vViai--dd~~~~~~iv~~~r~~~P~l~IiaR 496 (615)
T PRK03562 423 VKMVVLDHDPDHIE----TLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAI--DDPQTNLQLTELVKEHFPHLQIIAR 496 (615)
T ss_pred CCEEEEECCHHHHH----HHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEEEE--CCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 98799979999999----99967990897689999999867914068899994--9899999999999975899869998
Q ss_pred ECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 43797899999997699869976979
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
+. +.....+..+.|++.++.--|.
T Consensus 497 ar--d~~~~~~L~~~Ga~~vv~Et~e 520 (615)
T PRK03562 497 AR--DVDHYIRLRQAGVEKPERETFE 520 (615)
T ss_pred EC--CHHHHHHHHHCCCCEEECCHHH
T ss_conf 39--7788999997899989666589
No 256
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=47.94 E-value=25 Score=17.00 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=58.4
Q ss_pred CCEEEEECCCH---HHHHHHHHHHHHCCCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCH--HHHHHHHH
Q ss_conf 86699975998---99999999999889899999997-------99999997189989999836559997--99999999
Q gi|254780312|r 2 NQKILLAEDDD---DMRRFLIKALGKAGYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVMPEMDG--IELARRAT 69 (122)
Q Consensus 2 ~~rILiVDD~~---~~r~~l~~~L~~~G~~v~~a~~g-------~~al~~~~~~~~dlii~D~~mP~~dG--~el~~~ir 69 (122)
++||.+|--|. .-.+.++.+-+..|..+..+.++ .++++..+.+.+|+|+.|-- +.+- -+..++++
T Consensus 29 ~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~~~D~IlIDTa--Gr~~~d~~~~~el~ 106 (196)
T pfam00448 29 GKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAENYDVVLVDTA--GRLQNDKNLMDELK 106 (196)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHH
T ss_conf 9928999758776889999999998639817814877787899999999988468999999899--98747677899999
Q ss_pred H---H-CCCCCEEEEECCCCHHHHHHHH---H-CCCCE-EEEC
Q ss_conf 8---5-8998599994379789999999---7-69986-9976
Q gi|254780312|r 70 E---L-DPDLKVMFITGFAAVALNPDSN---A-PKNAK-VLSK 103 (122)
Q Consensus 70 ~---~-~~~~pii~~s~~~~~~~~~~~~---~-~g~~~-~l~K 103 (122)
+ . .|.-.++++++....+...++. + .+.+. +++|
T Consensus 107 ~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TK 149 (196)
T pfam00448 107 KIKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTK 149 (196)
T ss_pred HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 9985228730289985677821378999876004776268884
No 257
>pfam03698 UPF0180 Uncharacterized protein family (UPF0180). The members of this family are small uncharacterized proteins.
Probab=47.93 E-value=25 Score=17.00 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=43.7
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 9999999998898999999979999999718998999983655999799999999858998599994379789999999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~ 93 (122)
..-+..+|+..||+|..-.+.+++ +.+|+++.-=.=-++=|+ .......|||=-+|.+..+...+..
T Consensus 10 Ls~v~e~L~~~Gy~Vv~l~~~~~~------~~~da~VitG~d~N~mGi------~d~~t~~pVI~A~G~TaeEI~~~ve 76 (80)
T pfam03698 10 LSNIEEALKEKGYEVVRLKNEQDA------QGCDACVVTGLDSNMMGI------EDTVTKAPVIDASGLTAEEICQEVE 76 (80)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCCCC------CCCCCCCCEEECCCCCHHHHHHHHH
T ss_conf 259999999779878867870325------665889995898652144------1334568748668999999999999
No 258
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=47.90 E-value=25 Score=17.00 Aligned_cols=39 Identities=18% Similarity=0.460 Sum_probs=21.3
Q ss_pred HHHHCCCCEEEE-EEECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 997189989999-836559997999999998589985999943
Q gi|254780312|r 41 KVREEPFSLLLT-DIVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 41 ~~~~~~~dlii~-D~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.+.+.+||++++ |. |+.+ +.+++.+|+..+++|++-..+
T Consensus 80 ~i~~~~Pd~vi~ID~--pgFn-lrlak~lkk~~~~ipvi~yv~ 119 (382)
T PRK00025 80 LLLAEPPDVFILIDA--PDFN-LRLAKKLKKALPGIPIIHYVS 119 (382)
T ss_pred HHHHCCCCEEEEECC--CHHH-HHHHHHHHHHCCCCCEEEEEC
T ss_conf 998649999999778--3065-999999997169998899947
No 259
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=47.68 E-value=25 Score=16.98 Aligned_cols=67 Identities=15% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEE---EECCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 99999999999889899999997------999999971899899998---36559997999999998589985999943
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTD---IVMPEMDGIELARRATELDPDLKVMFITG 82 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D---~~mP~~dG~el~~~ir~~~~~~pii~~s~ 82 (122)
.+.+.+...+++.||.+..+.+. .++++.+.+..+|-+|+. ...++. ..+.++++++ .++|++++..
T Consensus 16 ~~~~gi~~~~~~~gy~~li~~s~~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~-~~~~~~~l~~--~~iPvV~i~~ 91 (273)
T cd01541 16 SIIRGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNP-NIDLYLKLEK--LGIPYVFINA 91 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-CHHHHHHHHH--CCCCEEEEEC
T ss_conf 99999999999869989999789998999999999996599989992531035787-7799999997--6998999956
No 260
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=47.60 E-value=25 Score=16.97 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=47.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCH--H-HHHHHHHH--CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8669997599899999999999889899999997--9-99999971--89989999836559997999999998589985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG--A-SAYDKVRE--EPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g--~-~al~~~~~--~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
.+|+.|+-| +...-.+.++|.+.|+++..+.+. . +..+..+. .....++. ..|.+++.+.|++..|+
T Consensus 272 gkrv~v~g~-~~~~~~l~~~L~ElG~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~d~~e~~~~i~~~~pD-- 343 (398)
T pfam00148 272 GKRVAIYGD-PDLAWGLARFLEELGMEVVAVGTGTGHPDDYERLKALLDGTLRVID-----DADLEELEELIKELKPD-- 343 (398)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHCCCCCEEEE-----CCCHHHHHHHHHHCCCC--
T ss_conf 977999888-4579999999998799799999678987889989985478977997-----79999999998726999--
Q ss_pred EEEEECCCCHHHHHHHHHCCC
Q ss_conf 999943797899999997699
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~ 97 (122)
+++++..... -+.+.|+
T Consensus 344 -liig~s~~~~---~a~~~~i 360 (398)
T pfam00148 344 -LLIGNSKERY---LAKKLGI 360 (398)
T ss_pred -EEEECHHHHH---HHHHCCC
T ss_conf -9998917899---9997399
No 261
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=47.55 E-value=25 Score=16.96 Aligned_cols=88 Identities=16% Similarity=0.006 Sum_probs=59.6
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|++ .....+...+++.|.++... .|-..-+..+++..||.|++-.. .-++.-+.+++|+.
T Consensus 134 kkvail~~~~~yg~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~~~--~~~~~~~~~q~~~~ 211 (312)
T cd06333 134 KTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGS--GTPAALPAKNLRER 211 (312)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEECC--CCHHHHHHHHHHHC
T ss_conf 8899996176055999999999999779939999972798767799999998569899999457--51699999999976
Q ss_pred CCCCCEEEEECCCCHHHHHHH
Q ss_conf 899859999437978999999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDS 92 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~ 92 (122)
.-+.|++...+.........+
T Consensus 212 G~~~~~~~~~~~~~~~~~~~~ 232 (312)
T cd06333 212 GYKGPIYQTHGVASPDFLRLA 232 (312)
T ss_pred CCCCCEEECCCCCCHHHHHHH
T ss_conf 998708812766787999987
No 262
>PRK13243 glyoxylate reductase; Reviewed
Probab=47.53 E-value=25 Score=16.96 Aligned_cols=93 Identities=13% Similarity=0.159 Sum_probs=56.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC-----HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 9866999759989999999999988989999999-----79999999718998999983655999799999999858998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNN-----GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~-----g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~ 75 (122)
|++||||.+.=+ ....+.|++. |+|....+ .++-++.+ ..+|.+++-. .-.+-+.+-+..|++
T Consensus 1 Mk~Kvlvt~~i~---~~~~~~L~~~-~~v~~~~~~~~~~~~~l~~~i--~~~d~li~~~------~~~i~~~~l~~ap~L 68 (333)
T PRK13243 1 MKPRVFITREIP---ENGIEMLEEH-FEVEVWEDEREIPREVLLEKV--KDVDALVTML------SERIDAEVFEAAPRL 68 (333)
T ss_pred CCCEEEEECCCC---HHHHHHHHHC-CCEEEECCCCCCCHHHHHHHH--CCCCEEEECC------CCCCCHHHHHCCCCC
T ss_conf 997899969889---9999999717-959992699999999999986--7982999858------885889999469998
Q ss_pred CEEEEECCCCHHHHHH-HHHCCCCEEEECCC
Q ss_conf 5999943797899999-99769986997697
Q gi|254780312|r 76 KVMFITGFAAVALNPD-SNAPKNAKVLSKPF 105 (122)
Q Consensus 76 pii~~s~~~~~~~~~~-~~~~g~~~~l~KP~ 105 (122)
++|...|.+-...-.+ +.+.|+.-.-+...
T Consensus 69 K~I~~~gvG~D~ID~~~a~~~gI~V~ntpg~ 99 (333)
T PRK13243 69 RIVANYAVGYDNIDVEEATKRGIYVTNTPGV 99 (333)
T ss_pred EEEEECCCCCCCCCHHHHHHCCCEEEECCCC
T ss_conf 0998857464330599999699789968996
No 263
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=46.73 E-value=26 Score=16.89 Aligned_cols=64 Identities=9% Similarity=0.114 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+...+...+++.||.+....+. .++++.+.++.+|-+|+- +.+.+-.+..+.+++ ..+|++++
T Consensus 16 ~~~~gie~~~~~~Gy~~~i~~t~~~~~~e~~~i~~l~~~~vdGiIi~--~~~~~~~~~~~~l~~--~~iPvV~~ 85 (266)
T cd06282 16 ECVQGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILT--VADAATSPALDLLDA--ERVPYVLA 85 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE--CCCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 99999999999879989999799997999999999996599879996--378775599999985--59978999
No 264
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.39 E-value=26 Score=16.86 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=37.1
Q ss_pred CCEEEE-ECCHHHHH-----------HHHHHCCCCEEEEEEECCC-----CCH-------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 989999-99979999-----------9997189989999836559-----997-------99999999858998599994
Q gi|254780312|r 26 GYEVVS-CNNGASAY-----------DKVREEPFSLLLTDIVMPE-----MDG-------IELARRATELDPDLKVMFIT 81 (122)
Q Consensus 26 G~~v~~-a~~g~~al-----------~~~~~~~~dlii~D~~mP~-----~dG-------~el~~~ir~~~~~~pii~~s 81 (122)
|..++. .-+|..+. +.++..+||+|++-+..-+ .+- .+++.++|+..|+.+|++++
T Consensus 24 GV~~~~~gi~GA~~~~~~~~~~~~~~~ql~~~~PDLVil~~GtNda~~~~~~~~~~~~~~~~~I~~ir~~~P~a~ill~~ 103 (189)
T cd01825 24 GVIYDNLGVNGASASLLLKWDAEFLQAQLAALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVG 103 (189)
T ss_pred CEEEEECCCCCCCHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 87996167686232455336889999999735999899990564235689999999999999999999758998099982
Q ss_pred CCC
Q ss_conf 379
Q gi|254780312|r 82 GFA 84 (122)
Q Consensus 82 ~~~ 84 (122)
..+
T Consensus 104 p~d 106 (189)
T cd01825 104 PPD 106 (189)
T ss_pred CCC
T ss_conf 882
No 265
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=46.33 E-value=26 Score=16.85 Aligned_cols=46 Identities=17% Similarity=0.221 Sum_probs=29.3
Q ss_pred HHHHCCCCEEEEEEECCC-----CCHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 997189989999836559-----99799999999858998599994379789
Q gi|254780312|r 41 KVREEPFSLLLTDIVMPE-----MDGIELARRATELDPDLKVMFITGFAAVA 87 (122)
Q Consensus 41 ~~~~~~~dlii~D~~mP~-----~dG~el~~~ir~~~~~~pii~~s~~~~~~ 87 (122)
.+.+..||++++|--+.- ++=-++++.+++ .|.---+++||....+
T Consensus 91 ~l~~~~~dlvVLDEi~~ai~~gli~~~~v~~~l~~-rp~~~evVlTGr~~p~ 141 (172)
T pfam02572 91 ALASGSYDLVVLDELNYALKYGYLDLEEVLELLRN-RPEGQHVVLTGRGAPP 141 (172)
T ss_pred HHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCH
T ss_conf 97588989997355799975599689999999982-8998779998999999
No 266
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.29 E-value=26 Score=16.85 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=45.3
Q ss_pred CC-CEEEEECC--CH---HHHHHHHHHHHHCCCEEEEECCHHHHHHH-----HHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 98-66999759--98---99999999999889899999997999999-----9718998999983655999799999999
Q gi|254780312|r 1 MN-QKILLAED--DD---DMRRFLIKALGKAGYEVVSCNNGASAYDK-----VREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 1 M~-~rILiVDD--~~---~~r~~l~~~L~~~G~~v~~a~~g~~al~~-----~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
|+ +|||||=- ++ .....+.+.|...|++|....++...... ...+.+|++++ =+-||- +++..|
T Consensus 1 m~lk~VlIV~k~~~~~A~~~a~~l~~~L~~rGi~v~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----lGGDGT-~L~aar 75 (304)
T PRK02645 1 MQLKLVIIAYKAGSPQAKEAAERCAKQLEARGIKVLMGPSGPKDNPYPVFLASAEELPDLAIV----LGGDGT-VLAAAR 75 (304)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEE----ECCCHH-HHHHHH
T ss_conf 974599999858999999999999999998889999844434447776200144668889999----786889-999999
Q ss_pred HHC-CCCCEEEEE
Q ss_conf 858-998599994
Q gi|254780312|r 70 ELD-PDLKVMFIT 81 (122)
Q Consensus 70 ~~~-~~~pii~~s 81 (122)
... .++|++-+.
T Consensus 76 ~~~~~~iPilGiN 88 (304)
T PRK02645 76 HLAPHDIPILSFN 88 (304)
T ss_pred HHCCCCCCEEEEE
T ss_conf 8542699889982
No 267
>PRK07589 ornithine cyclodeaminase; Validated
Probab=45.74 E-value=27 Score=16.80 Aligned_cols=40 Identities=25% Similarity=0.351 Sum_probs=36.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 6699975998999999999998898999999979999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV 42 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~ 42 (122)
++|.|.+-++...+.+.+-|+..|+.+..+.|.++|.+-.
T Consensus 155 ~~V~v~~r~~~~a~~~a~~l~~~g~~v~~~~s~~eAv~~A 194 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVRCRSVAEAVEGA 194 (346)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCC
T ss_conf 6899982887999999999872698089949999997219
No 268
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=45.42 E-value=27 Score=16.77 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=39.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 66999759989999999999988989999-999799999997189989999836
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
.+|.-+|-++.=.+.+..-+++.|..+.. ..++...-.+..+..||.|++|.-
T Consensus 270 ~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~~~~~fD~ILlDaP 323 (428)
T PRK10901 270 AQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAP 323 (428)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCCCEEEECCC
T ss_conf 928999698889999999999759973999776557233134456787997589
No 269
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=45.41 E-value=27 Score=16.76 Aligned_cols=104 Identities=14% Similarity=0.057 Sum_probs=66.2
Q ss_pred CEE--EEECCC--HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669--997599--899999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKI--LLAEDD--DDMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rI--LiVDD~--~~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+|| +..+++ ....+.+...+.+.|.+|... .|=..-+..+++..||+|++- ...-++..++++.++.
T Consensus 138 kkvail~~~~~yG~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~ki~~~~pD~v~~~--~~~~~~~~~~kq~~~~ 215 (312)
T cd06346 138 KSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVI--GYPETGSGILRSAYEQ 215 (312)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCHHHHHHHHHHHHC
T ss_conf 64899995772669999999999998799899999669998455999999986699999994--6734799999999975
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCC-CCEEEECCCCHH
Q ss_conf 8998599994379789999999769-986997697989
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLR 108 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g-~~~~l~KP~~~~ 108 (122)
.-..|++..++.............. ...|..-|....
T Consensus 216 G~~~~~~~~~g~~~~~~~~~~g~~~~~g~~~~~p~~~~ 253 (312)
T cd06346 216 GLFDKFLLTDGMKSDSFLPADGGYILAGSYGTSPGAGG 253 (312)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHCCEEEECCCCCC
T ss_conf 99997796445568789998779974856892779998
No 270
>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein. Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.
Probab=45.36 E-value=27 Score=16.76 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=49.7
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEEE---CCH----HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699975998----99999999999889899999---997----999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGYEVVSC---NNG----ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~~v~~a---~~g----~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
||+-++.+|. .....++..+++.|.+|... ..| ..-+..+++..||+|++ ...+-++..++++.++.
T Consensus 135 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~a~pD~v~~--~~~~~~~~~~~kq~~~~ 212 (359)
T TIGR03407 135 KRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLGHTDFQTIINKIKAFKPDVVFN--TLNGDSNVAFFKQLKNA 212 (359)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE--ECCCCCHHHHHHHHHHH
T ss_conf 8799994587305899999999999759973778825798755899999999769999999--37462057999999982
Q ss_pred CCCCC
Q ss_conf 89985
Q gi|254780312|r 72 DPDLK 76 (122)
Q Consensus 72 ~~~~p 76 (122)
.-+.+
T Consensus 213 G~~~~ 217 (359)
T TIGR03407 213 GITAK 217 (359)
T ss_pred CCCCC
T ss_conf 89976
No 271
>PRK12743 acetoin dehydrogenase; Provisional
Probab=45.27 E-value=27 Score=16.75 Aligned_cols=80 Identities=10% Similarity=0.155 Sum_probs=52.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHH----HHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCC
Q ss_conf 98669997599899999999999889899999-997999----999971899899998365599979-999999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASA----YDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~a----l~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~ 74 (122)
|+|-+||.--...+-..++..|-+.|+.|... .+.++. .+.+++....+...-..+-+.+.. .+.+++.+....
T Consensus 1 M~KValITGgs~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~ 80 (253)
T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLGR 80 (253)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 99989990758899999999999879989997489979999999999945991899990489999999999999998199
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
+-+++-
T Consensus 81 iDilVN 86 (253)
T PRK12743 81 LDVLVN 86 (253)
T ss_pred CCEEEE
T ss_conf 989998
No 272
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=45.18 E-value=27 Score=16.74 Aligned_cols=109 Identities=12% Similarity=0.146 Sum_probs=61.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE----------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHH
Q ss_conf 8669997599899999999999889899999----------9979999999718998999983655999799-9999998
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC----------NNGASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATE 70 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a----------~~g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~ 70 (122)
+++||+.--+. .|..+...|...|+.|..+ +......+.+....+|.++.=-. .+.+ +++.+++
T Consensus 126 ~~~vL~~~g~~-~~~~L~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~~d~i~ftS~----~~v~~~~~~~~~ 200 (252)
T PRK05928 126 GKRVLYLRGNG-GRPLLGDFLQERGADVDECEVYERKPPKLEGAEELIEELQTGEVDAIIFTSP----SMVRAFLSLAPE 200 (252)
T ss_pred CCEEEEEECCC-CCHHHHHHHHHCCCEEEEEEEEEEECCCCCCHHHHHHHHHCCCCCEEEEECH----HHHHHHHHHHHH
T ss_conf 98799981676-6657899999779847999865763788882799999986289879999099----999999998664
Q ss_pred H-----CCCCCEEEEECCCCHHHHHHHHHCCCC-EEEECCCCHHHHHHHHHHHHH
Q ss_conf 5-----899859999437978999999976998-699769798999999999960
Q gi|254780312|r 71 L-----DPDLKVMFITGFAAVALNPDSNAPKNA-KVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 71 ~-----~~~~pii~~s~~~~~~~~~~~~~~g~~-~~l~KP~~~~~L~~~i~~~l~ 119 (122)
. ..+++++.++ ...+..+.+.|.. .+..+..+.+.|++++.+.|+
T Consensus 201 ~~~~~~~~~~~iv~ig----~~ta~~~~~~G~~~~~~a~~~~~~~lv~al~~~l~ 251 (252)
T PRK05928 201 LYRRHWLLRCRAVAIG----KRTAEALKELGVKVVIVPDNADNEALLRALKKSLK 251 (252)
T ss_pred HCCHHHHHCCEEEEEC----HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 0302565188799989----99999999869981798499997999999999961
No 273
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative; InterPro: IPR010088 This entry represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulphate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation..
Probab=44.92 E-value=28 Score=16.72 Aligned_cols=73 Identities=21% Similarity=0.177 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHHCCCEEE-EECCHHH-HHHHHHHCCCCEEEEEE-ECC-CCCHHH---HHHHHHHH-C-CCCCEEEEE
Q ss_conf 98999999999998898999-9999799-99999718998999983-655-999799---99999985-8-998599994
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVV-SCNNGAS-AYDKVREEPFSLLLTDI-VMP-EMDGIE---LARRATEL-D-PDLKVMFIT 81 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~-~a~~g~~-al~~~~~~~~dlii~D~-~mP-~~dG~e---l~~~ir~~-~-~~~pii~~s 81 (122)
-..++..++..|++.|++|+ ...+-.. |=..+..+.|||+++.- .-- +..=.| ++.+|-.. . |.--+|+=|
T Consensus 14 T~eVA~~I~~~l~~~G~eVDW~~~r~~~La~~pldPe~ydL~~LGtwT~~~GrTP~e~KdFiaEl~~liGKP~nvaiFGT 93 (145)
T TIGR01754 14 TKEVADIIRDILEKDGHEVDWVEFRISTLADAPLDPEDYDLYLLGTWTVERGRTPDEMKDFIAELAVLIGKPKNVAIFGT 93 (145)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECCHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 78999999999984797767664000464246789986315774312235789966689999999998369982488658
Q ss_pred CC
Q ss_conf 37
Q gi|254780312|r 82 GF 83 (122)
Q Consensus 82 ~~ 83 (122)
|-
T Consensus 94 Ge 95 (145)
T TIGR01754 94 GE 95 (145)
T ss_pred CC
T ss_conf 87
No 274
>PRK06182 short chain dehydrogenase; Validated
Probab=44.45 E-value=28 Score=16.67 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=55.3
Q ss_pred CC-CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEE
Q ss_conf 98-669997599899999999999889899999997999999971899899998365599979-9999999858998599
Q gi|254780312|r 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVM 78 (122)
Q Consensus 1 M~-~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii 78 (122)
|+ |.+||---...+-..+...|.+.|+.|..+..-.+.++.+.+.....+-+|+.= .+.. ++.+++.+....+-++
T Consensus 1 mk~Kv~lITGassGIG~a~a~~la~~G~~V~~~~r~~~~l~~l~~~~~~~~~~Dvt~--~~~v~~~~~~i~~~~g~iDiL 78 (273)
T PRK06182 1 MKKKVALVTGASSGIGKATARKLIAEGFTVYGAARRVDKMEDLASLGIHPLALDVTD--EASMKAAVATILAEEGRIDVL 78 (273)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEEECCC--HHHHHHHHHHHHHHHCCCCEE
T ss_conf 946989990632099999999999879989999798999999996799799985899--999999999999983998877
Q ss_pred EE
Q ss_conf 99
Q gi|254780312|r 79 FI 80 (122)
Q Consensus 79 ~~ 80 (122)
+-
T Consensus 79 VN 80 (273)
T PRK06182 79 VN 80 (273)
T ss_pred EE
T ss_conf 50
No 275
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=44.33 E-value=28 Score=16.66 Aligned_cols=79 Identities=16% Similarity=0.156 Sum_probs=52.8
Q ss_pred CEEEEECCCHHHH----HHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6699975998999----9999999988989999999---------79999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDDDMR----RFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~~~r----~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|+|||-|....+ .-+...|+..|..+...+. ..+|.+.+++..+|+||- .-+-+-++.++.|.
T Consensus 32 k~~lvvt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~V~~nP~~~~v~~~~~~~r~~~~D~iva---vGGGS~iD~AKaia 108 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS---LGGGSPHDCAKGIA 108 (383)
T ss_pred CEEEEECCCCHHHCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHHH
T ss_conf 879998284566574699999999876995899689527969999999999998739999999---38962267899999
Q ss_pred H-----------------HCCCCCEEEEECCC
Q ss_conf 8-----------------58998599994379
Q gi|254780312|r 70 E-----------------LDPDLKVMFITGFA 84 (122)
Q Consensus 70 ~-----------------~~~~~pii~~s~~~ 84 (122)
- ..|.+|+|.+....
T Consensus 109 ~~~~~~~~~~d~~g~~~~~~~~lP~iaIPTTa 140 (383)
T PRK09860 109 LVAANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HHHHCCCCHHHHHCCCCCCCCCCCEEEECCCC
T ss_conf 99808998899736675568889889873998
No 276
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=44.24 E-value=28 Score=16.65 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=65.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 66999759989999999999988989-99-9999799999997-189989999836559997999999998589985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VV-SCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~-~a~~g~~al~~~~-~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
++|.=||=++........-....|.. +. .+.+.++...... ...||.|++|=-=.++ +-++++.+.+.. .+-|+
T Consensus 316 ~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~-~~~~lk~l~~~~--p~~Iv 392 (432)
T COG2265 316 KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGA-DREVLKQLAKLK--PKRIV 392 (432)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECCCCCCC-CHHHHHHHHHCC--CCCEE
T ss_conf 579999648999999999999739887799958688886510025799989989999999-989999998558--98689
Q ss_pred EECCCCHHHHHHHHHCCCCEE-EEC--CCC
Q ss_conf 943797899999997699869-976--979
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKV-LSK--PFH 106 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~-l~K--P~~ 106 (122)
..+..-...+.+....-..+| +.| ||+
T Consensus 393 YVSCNP~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 393 YVSCNPATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred EEECCHHHHHHHHHHHHHCCEEEEEEEEEE
T ss_conf 997687888989999985790487876671
No 277
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=43.74 E-value=16 Score=18.08 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=16.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC
Q ss_conf 866999759989999999999988
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKA 25 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~ 25 (122)
.+|||||||=...+..+...++..
T Consensus 87 GkkVLIVDDI~DTG~Tl~~a~~~l 110 (192)
T COG2236 87 GKKVLIVDDIVDTGETLELALEEL 110 (192)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 985899823337617699999999
No 278
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=43.67 E-value=29 Score=16.60 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=57.1
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989----9999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
++|-++.+|.. ....++..+++.|.++... .|-...+..+++..||+|++-. +.-++..++++.++.
T Consensus 145 k~vav~~~d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~D~s~~v~~l~~~~pd~v~~~~--~~~~~~~~~~~~~~~ 222 (344)
T cd06345 145 KTAAIVAEDAAWGKGIDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGF--SGNVGVLFTQQWAEQ 222 (344)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHC
T ss_conf 499999607245599999999998753975999996589764549999999865999999906--743699999999975
Q ss_pred CCCCCEEEEECCCCHHHH
Q ss_conf 899859999437978999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALN 89 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~ 89 (122)
.-..+++.+++.......
T Consensus 223 g~~~~~~~~~~~~~~~~~ 240 (344)
T cd06345 223 KVPIPTIGISVEGNSPAF 240 (344)
T ss_pred CCCCCEEEEECCCCCHHH
T ss_conf 999886999747678889
No 279
>PRK11119 proX glycine betaine transporter periplasmic subunit; Provisional
Probab=43.18 E-value=29 Score=16.56 Aligned_cols=50 Identities=16% Similarity=0.208 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 5998999999999998898999--99997999999971899899998365599
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
++....-.+.+..|++.||+|. ...+..-.+..+.++..|+.+--+ ||..
T Consensus 40 ~~~~a~t~v~~~~Le~lGY~Ve~~~~~~~~~~~~ala~GdiD~~~~~W-lP~~ 91 (332)
T PRK11119 40 AEETFQTLLVSRALEKLGYDVNKPKEVDYNVFYTSIASGDATFTAVNW-FPLH 91 (332)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHCCCCEEEECCC-CCCC
T ss_conf 089999999999999869985420144468899998558844865561-7651
No 280
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=42.99 E-value=30 Score=16.54 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 8669997599899999999999889899999997999999971899899998365599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
.|+++||-.+..+..-++.+|...|.+|..+.+-..-+..+.. .-|++++-..-|++
T Consensus 44 Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~T~~l~~~~~-~ADIvIsA~G~~~l 100 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNLKEHTK-QADIVIVAVGKPGL 100 (168)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-HCCEEEEECCCCCC
T ss_conf 8569998787300899999998489979997689889799741-04535541587663
No 281
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=42.99 E-value=30 Score=16.54 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=35.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 66999759989999999999988--9899999997-------99999997189989999836559997999999998589
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~--G~~v~~a~~g-------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~ 73 (122)
.||.++-..+...+.+...|... |..+....+| ++.++.+.+..+|+|++-+.+|.- -.++...++..+
T Consensus 49 ~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div~vglG~PkQ--E~~~~~~~~~~~ 126 (172)
T pfam03808 49 KRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLLFVGLGAPKQ--EKWIARNRARLP 126 (172)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH--HHHHHHHHHHCC
T ss_conf 838998088899999999999887995599987999986899999999984599999995698177--999999998779
Q ss_pred CCCEEEEEC
Q ss_conf 985999943
Q gi|254780312|r 74 DLKVMFITG 82 (122)
Q Consensus 74 ~~pii~~s~ 82 (122)
.++++..|
T Consensus 127 -~~v~~~vG 134 (172)
T pfam03808 127 -VPVFIGVG 134 (172)
T ss_pred -CCEEEECC
T ss_conf -98798524
No 282
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=42.57 E-value=30 Score=16.50 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=64.9
Q ss_pred CEEEEECCC----HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997599----899999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDD----DDMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~----~~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||.++-+| ......+...+++.|++|... .|-...+..+++..||+|++-. ..-+...++++.++.
T Consensus 135 ~~vaiv~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~i~~~~~~~pd~v~~~~--~~~~~~~~~~q~~~~ 212 (336)
T cd06360 135 KKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFF--AGGDAIKFVKQYDAA 212 (336)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCCHHHHHHHHHHHC
T ss_conf 869994687446699999999999973996999996589985679999999876989999935--660489999999973
Q ss_pred C--CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCH-------HHHHHHHHH
Q ss_conf 8--99859999437978999999976998699769798-------999999999
Q gi|254780312|r 72 D--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL-------RDLVNEVNR 116 (122)
Q Consensus 72 ~--~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~-------~~L~~~i~~ 116 (122)
. +++|++-.....+.............-+..-|+.+ .++.++.++
T Consensus 213 G~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~y~~ 266 (336)
T cd06360 213 GLKAKIPLIGSGFLTDGTTLGAAGEAAEGVITALHYADTLDNPANQAFVKAYRA 266 (336)
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 998780699865447888887657631676984003775688256999999999
No 283
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]; InterPro: IPR012766 This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This entry excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This entry does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cut offs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see ).; GO: 0003825 alphaalpha-trehalose-phosphate synthase (UDP-forming) activity, 0005992 trehalose biosynthetic process.
Probab=42.48 E-value=30 Score=16.49 Aligned_cols=58 Identities=22% Similarity=0.525 Sum_probs=44.4
Q ss_pred CCCCHHHHHHH--HHHHCCC-CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 59997999999--9985899-8599994379789999999769986997697989999999999603
Q gi|254780312|r 57 PEMDGIELARR--ATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 57 P~~dG~el~~~--ir~~~~~-~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
|--||.-|... +-...|+ +-|+++| +.+..|.+.. ...|+=|.+.+.+.++|+++|+.
T Consensus 382 pLRDGMNLVAKEYVAaQ~~~~PGVLiLS-----efAGAA~eL~-~ALlVNP~d~~g~a~Ai~~AL~M 442 (476)
T TIGR02400 382 PLRDGMNLVAKEYVAAQDPEDPGVLILS-----EFAGAAQELK-GALLVNPYDIEGMADAIARALTM 442 (476)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCEECC-----HHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 5656751353587852898847854300-----2666998850-15621897889999999998529
No 284
>KOG3040 consensus
Probab=42.41 E-value=30 Score=16.48 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEE---EECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHH
Q ss_conf 998999999999998898999---999979999999718--9989999836559997999
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVV---SCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIEL 64 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~---~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el 64 (122)
-....+..+...|++.||.+. ...+...|-+++.++ +|-+++-|--|++.+|++.
T Consensus 48 ttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT 107 (262)
T KOG3040 48 TTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT 107 (262)
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCEEEECCCCHHHCCCCCC
T ss_conf 760268999999998177755788527538999999965878448974550532787667
No 285
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=42.24 E-value=30 Score=16.47 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=69.1
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHH---HHHCCCCEEEEEEEC----CCCCHHHHHHHHHHHCC--CCC
Q ss_conf 75998999999999998898999--99997999999---971899899998365----59997999999998589--985
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVV--SCNNGASAYDK---VREEPFSLLLTDIVM----PEMDGIELARRATELDP--DLK 76 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~---~~~~~~dlii~D~~m----P~~dG~el~~~ir~~~~--~~p 76 (122)
++|.+.....+ ..|+..|+++. -+.+|...+.. +++-|+|.+=+|-.+ |+- -...+.|..... ++.
T Consensus 603 m~d~e~a~~~L-~~Lr~lGV~IALDDFGTGYSSLsYLs~Lk~LPID~LKIDRSFV~~L~~D--~aiv~aIiaLA~~LgL~ 679 (728)
T PRK11829 603 IQDLDEALRLL-RELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPED--DAIARIISCVSDVLKVR 679 (728)
T ss_pred HCCHHHHHHHH-HHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEECHHHHCCCCCC--HHHHHHHHHHHHHCCCE
T ss_conf 22999999999-9999789989996988743638999874169999770796886578888--99999999999987996
Q ss_pred EEEEECCCCHHHHHHHHHCCCC----EEEECCCCHHHHHHH
Q ss_conf 9999437978999999976998----699769798999999
Q gi|254780312|r 77 VMFITGFAAVALNPDSNAPKNA----KVLSKPFHLRDLVNE 113 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~~~~g~~----~~l~KP~~~~~L~~~ 113 (122)
++.-|....+......+.|++ .|..||...+++..+
T Consensus 680 -VVAEGVET~eQl~~L~~lGCd~~QGYlFSkPLP~dEFEar 719 (728)
T PRK11829 680 -VMAEGVETEEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQ 719 (728)
T ss_pred -EEEECCCHHHHHHHHHHCCCCEECCCEECCCCCHHHHHHH
T ss_conf -9996798099999999769997546842668999999999
No 286
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=42.24 E-value=30 Score=16.47 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=43.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf 8669997599899999999999889899999997999999971899899998365599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~ 59 (122)
.|++.||-.+..+-.-++.+|.+.|..|..+.+-..-+...-. .-|++++-..=|++
T Consensus 28 Gk~vvVvGrS~~VG~Pla~lL~~~~atVt~~hs~t~~l~~~~~-~ADIvI~a~G~p~~ 84 (140)
T cd05212 28 GKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH-DADVVVVGSPKPEK 84 (140)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHH-HCCEEEECCCCCCC
T ss_conf 9999999998124999999999788989994699959899852-34999981687672
No 287
>PRK13175 consensus
Probab=42.22 E-value=31 Score=16.47 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=48.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH----H------HHHHHHHH-
Q ss_conf 669997599899999999999889899999997999999971899899998365599979----9------99999985-
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI----E------LARRATEL- 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~----e------l~~~ir~~- 71 (122)
+||.|+|=...+...+...|+..|+++....+..+. ..+|.+|+ |+..-+ + +.+.|++.
T Consensus 2 ~kI~IiD~g~gn~~si~~al~~lg~~~~i~~~~~~i------~~~d~lIL----PGvGsf~~~~~~l~~~~l~~~i~~~~ 71 (206)
T PRK13175 2 PKIAVIDYGMGNLHSVCKALERLGAEPILTSDPADL------LAADALIL----PGVGAFDPAMQNLRSRGLIPPIKDAI 71 (206)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHH------HCCCEEEE----CCCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 879999799768999999999879989997998998------32892896----89985267887555318716899998
Q ss_pred CCCCCEE-EEECC
Q ss_conf 8998599-99437
Q gi|254780312|r 72 DPDLKVM-FITGF 83 (122)
Q Consensus 72 ~~~~pii-~~s~~ 83 (122)
....|++ ++-|+
T Consensus 72 ~~g~PiLGIClGm 84 (206)
T PRK13175 72 ASGKPFLGICLGL 84 (206)
T ss_pred HCCCCEEEEEHHH
T ss_conf 5699779986786
No 288
>TIGR00619 sbcd nuclease SbcCD, D subunit; InterPro: IPR004593 All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely to be homologous to the MRE11 family.; GO: 0004527 exonuclease activity, 0006259 DNA metabolic process.
Probab=42.21 E-value=31 Score=16.46 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHCCCCEEEE-----EEECCCCCHH----HHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 9999997189989999-----8365599979----99999998589985999943797899999
Q gi|254780312|r 37 SAYDKVREEPFSLLLT-----DIVMPEMDGI----ELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 37 ~al~~~~~~~~dlii~-----D~~mP~~dG~----el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
+.++.+.++++|+||+ |-.-|.---- +++..+....|.+|+++++|.-|......
T Consensus 39 ~l~~~~~~e~~Da~lvAGDvFD~~~P~~ea~~L~~~~l~~L~~~~~R~p~Vvi~GNHD~~~~Ls 102 (275)
T TIGR00619 39 DLLEILKAEQVDALLVAGDVFDTANPPAEAQELFYAFLLNLSDANPRLPIVVISGNHDSADRLS 102 (275)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHC
T ss_conf 9999997389988997000078898879999999999999985389612787047888778611
No 289
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=42.13 E-value=31 Score=16.46 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=45.0
Q ss_pred CEEEEECCCHH----HHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 66999759989----999999999988989999999---------79999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDDD----MRRFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|+|||-|... ...-+...|+..|..+....+ ..+|.+.+++..+|+||- .-+-+-++.++.+.
T Consensus 30 k~~lvvtd~~~~k~g~~~~v~~~L~~~~i~~~vf~~v~pnP~~~~V~~~~~~~r~~~~D~Iia---vGGGSviD~AKaia 106 (381)
T PRK10624 30 HKALIVTDKTLVQCGVVAKVTDKLDAAGLAYEIYDGVKPNPTISVVKEGLEVFQASGADYLIA---IGGGSPQDTCKAIG 106 (381)
T ss_pred CEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCHHHHHHHHHH
T ss_conf 879999696545563699999999876983999889258989999999999998649998998---08940888999999
No 290
>PRK07413 hypothetical protein; Validated
Probab=42.04 E-value=31 Score=16.45 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=19.1
Q ss_pred HHHCCCCEEEEEEECCC-----CCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 97189989999836559-----9979999999985899859999437
Q gi|254780312|r 42 VREEPFSLLLTDIVMPE-----MDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 42 ~~~~~~dlii~D~~mP~-----~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
+.+..||+||+|--.+- .+=-++++.|++ .|.---+++||.
T Consensus 301 i~sg~ydlVILDEin~Al~~gll~~e~Vl~~l~~-rP~~~elVlTGR 346 (382)
T PRK07413 301 IASGLYKTIILDELNPTVDLELLPVEPIVQTLLR-KPRDTEVIITGR 346 (382)
T ss_pred HHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECC
T ss_conf 8658858899833168887599779999999984-899888999589
No 291
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=41.33 E-value=32 Score=16.38 Aligned_cols=84 Identities=24% Similarity=0.147 Sum_probs=57.1
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEEECCCCH
Q ss_conf 7599899999999999889899999997999999971899899998365599979999999985-899859999437978
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFITGFAAV 86 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~s~~~~~ 86 (122)
+-.+..+...+...|.+.|+.+....+....+.....-.++=+++-+..++.. -++.+.++.. ....|+|.+|+.+..
T Consensus 140 ~G~S~~vA~~~~~kl~rig~~~~~~~d~~~~~~~~~~l~~~Dv~I~iS~sG~t-~~~~~~~~~Ak~~Ga~iIaIT~~~~s 218 (282)
T PRK11557 140 IGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPDDLLLAISYSGER-RELNLAADEALRVGGKVLAITGFTPN 218 (282)
T ss_pred CCCHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHCCCCCEEEEEECCCCC-HHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 04369999999999998099637408868999999818999989998599997-89999999999879939997298998
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780312|r 87 ALNPDS 92 (122)
Q Consensus 87 ~~~~~~ 92 (122)
+....+
T Consensus 219 pLa~~a 224 (282)
T PRK11557 219 ALQQRA 224 (282)
T ss_pred CHHHHC
T ss_conf 158869
No 292
>PRK13561 putative phosphodiesterase; Provisional
Probab=41.18 E-value=32 Score=16.37 Aligned_cols=100 Identities=16% Similarity=0.271 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHH---CCCCEEEEEEEC----CCCCHHHHHHHHHHHCC--CCCEEE
Q ss_conf 98999999999998898999--99997999999971---899899998365----59997999999998589--985999
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVRE---EPFSLLLTDIVM----PEMDGIELARRATELDP--DLKVMF 79 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~---~~~dlii~D~~m----P~~dG~el~~~ir~~~~--~~pii~ 79 (122)
+.......-..|+..|+++. -+.+|...+..++. -|+|.+=+|-.+ |+ .-.+++.|-.... +++ ++
T Consensus 532 ~~~~~~~~l~~Lr~~Gv~ialDDFGtGySSL~yL~~~~~Lpid~lKID~sfv~~l~~--d~~iv~aii~la~~lgl~-vI 608 (651)
T PRK13561 532 DPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQHMKSLPIDVLKIDKMFVDGLPE--DSSMVAAIIMLAQSLNLQ-MI 608 (651)
T ss_pred CHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCEEEECHHHHCCCCC--CHHHHHHHHHHHHHCCCE-EE
T ss_conf 999999999999978999999899996420999853467999979889899738866--399999999999987995-99
Q ss_pred EECCCCHHHHHHHHHCCCCE----EEECCCCHHHHHHH
Q ss_conf 94379789999999769986----99769798999999
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAK----VLSKPFHLRDLVNE 113 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~----~l~KP~~~~~L~~~ 113 (122)
..|....+......+.|++. |+.||...+++..+
T Consensus 609 AEGVEt~~q~~~L~~lGcd~~QGy~fs~Plp~~eFe~~ 646 (651)
T PRK13561 609 AEGVETEAQRDWLAKAGVGVAQGFLFARPLPIEIFEER 646 (651)
T ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHH
T ss_conf 92688499999999769998756813748999999998
No 293
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=41.11 E-value=32 Score=16.36 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf 979999999718998999983655
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMP 57 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP 57 (122)
++++..+.+.++ -+++|+|++=|
T Consensus 2 ~p~el~~~l~~~-e~~~llDVR~~ 24 (100)
T cd01523 2 DPEDLYARLLAG-QPLFILDVRNE 24 (100)
T ss_pred CHHHHHHHHHCC-CCCEEEECCCH
T ss_conf 889999999779-99689989977
No 294
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=40.98 E-value=32 Score=16.35 Aligned_cols=63 Identities=16% Similarity=0.194 Sum_probs=37.1
Q ss_pred CCHHHHHHHHH---HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 99799999997---1899899998365599979999999985899859999437978999999976998
Q gi|254780312|r 33 NNGASAYDKVR---EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 33 ~~g~~al~~~~---~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
.|..||+.-+. ++--|++.+ =|.+.=+++++++|+..+++|+...--.++..+...+.+.|.-
T Consensus 222 ~n~~eAlre~~~D~~EGAD~lMV---KPa~~YLDiI~~~k~~~~~~Pv~aYqVSGEYaMikaaa~~G~~ 287 (320)
T cd04824 222 GARGLALRAVERDVSEGADMIMV---KPGTPYLDIVREAKDKHPDLPLAVYHVSGEYAMLHAAAEAGAF 287 (320)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE---CCCCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCC
T ss_conf 85789999986437739997995---2762289999999985789988999762899999999987997
No 295
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=40.97 E-value=32 Score=16.35 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=30.0
Q ss_pred CEEEEEEECCC------------CCHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCCCEEE
Q ss_conf 89999836559------------9979999999985899859999437978--999999976998699
Q gi|254780312|r 48 SLLLTDIVMPE------------MDGIELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVL 101 (122)
Q Consensus 48 dlii~D~~mP~------------~dG~el~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~~~~l 101 (122)
+++++|++-|. +.--++-.++.+..++.|+++.-..+.+ .......+.|...|-
T Consensus 13 ~~~liDVR~~~E~~~~hI~gai~iP~~~l~~~~~~l~k~~~ivv~C~~G~rS~~aa~~L~~~G~~v~~ 80 (90)
T cd01524 13 GVTLIDVRTPQEFEKGHIKGAINIPLDELRDRLNELPKDKEIIVYCAVGLRGYIAARILTQNGFKVKN 80 (90)
T ss_pred CEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 98999798789995595688746850779999998615870999889980599999999986998899
No 296
>PRK13139 consensus
Probab=40.78 E-value=32 Score=16.33 Aligned_cols=43 Identities=9% Similarity=0.183 Sum_probs=27.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECC------CCHHHHHHHHHCCCCEEEECCC
Q ss_conf 9999999985899859999437------9789999999769986997697
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGF------AAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~------~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
|++++++++. .++|+++||-+ +-.....++.+.|++++|.--.
T Consensus 81 ~~~~~~~~~~-~~~pivlM~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDL 129 (254)
T PRK13139 81 FDFAREVVAA-FNIPFLFMTYYNILFKYGVERFIDEVADIGVKGLIVPDL 129 (254)
T ss_pred HHHHHHHHHC-CCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEECCCC
T ss_conf 9999999724-897689995259998709999999999759985864799
No 297
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.76 E-value=32 Score=16.33 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=47.0
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCCEEEEEC---------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6699975998----999999999998898999999---------979999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGYEVVSCN---------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~~v~~a~---------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|+|||-|.- ...+-+...|...|.++..+. +..++.+.+++..+|.||- +-+-+-+++++.+.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa---lGGGS~~D~AK~i~ 106 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA---LGGGSVIDAAKAIA 106 (377)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHHH
T ss_conf 715999798631106699999998744982899568899998889999999998169998999---77930878999999
No 298
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=40.60 E-value=32 Score=16.31 Aligned_cols=60 Identities=20% Similarity=0.371 Sum_probs=47.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHH
Q ss_conf 986699975998999999999998898999999-------979999999718998999983655999799
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~e 63 (122)
|+ |||.-.+=.....+.+.|. -+++|.... +.....+.+++..||+||--.-+...|+-|
T Consensus 1 M~--iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE 67 (281)
T COG1091 1 MK--ILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAE 67 (281)
T ss_pred CC--EEEECCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCC
T ss_conf 95--8997698767999999717-7843995157655556858999999861999899873203654133
No 299
>TIGR03414 ABC_choline_bnd choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling (PMID:16930487) vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins.
Probab=40.50 E-value=32 Score=16.30 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHH
Q ss_conf 9989999999999988989999-9997999999971899899998365599979
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~ 62 (122)
+......+++.+|++.||+|.. ..+....+..+.++.+|+..--+ +|..+.+
T Consensus 19 s~~~~t~v~~~iLE~~GY~Ve~~~~~~~~~~~~la~GdiDv~~e~W-~p~~~~~ 71 (290)
T TIGR03414 19 DITATTALASVLLEGLGYQPKVTLLSVPVTYAGLKDGDLDVFLGNW-MPAMEPD 71 (290)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEEECC-CCCCHHH
T ss_conf 8999999999999974996489967749999999769970787111-4785778
No 300
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=40.44 E-value=33 Score=16.30 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=49.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH----HHH----HHHHH-CC
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799----999----99985-89
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE----LAR----RATEL-DP 73 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e----l~~----~ir~~-~~ 73 (122)
++|+|+|=-..+-..+.+.|+..|+.+....+.++. ..+|.+++ |+...+. -+. .+++. ..
T Consensus 2 k~I~Iid~G~~n~~si~~~l~~lg~~~~i~~~~~~l------~~~d~iIL----PGvG~~~~~~~~l~~~~~~i~~~~~~ 71 (201)
T PRK13143 2 KMIVIIDYGLGNLRSVSKGLERAGADVEITSDPEEI------LSADGIVL----PGVGAFGDVMENLGPLKETINEAVDD 71 (201)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEECCCHHHH------HHCCEEEE----CCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 889999889719999999999869859992899998------43796797----38881889998765157999999986
Q ss_pred CCCEE-EEECCC
Q ss_conf 98599-994379
Q gi|254780312|r 74 DLKVM-FITGFA 84 (122)
Q Consensus 74 ~~pii-~~s~~~ 84 (122)
..|++ ++-|+.
T Consensus 72 ~~PiLGIClGmQ 83 (201)
T PRK13143 72 GKPFLGICLGMQ 83 (201)
T ss_pred CCCEEEEEHHHH
T ss_conf 998799808986
No 301
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=40.33 E-value=33 Score=16.29 Aligned_cols=63 Identities=13% Similarity=0.024 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999998898999999979------99999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGA------SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~------~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+...+++.||.+..+.+.. ..++++.++..|-+|+- +....-+.++.+++ .++|++++
T Consensus 20 ~l~~gie~~~~~~Gy~lll~~~~~~~~~~~~~~~~l~~~~vDGiIl~---~~~~~~~~~~~l~~--~~iP~V~~ 88 (268)
T cd06271 20 EFLSGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIIS---RTRPDDPRVALLLE--RGFPFVTH 88 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 99999999999849989999589998999999999984898889996---78898199999997--79999997
No 302
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=40.19 E-value=33 Score=16.27 Aligned_cols=33 Identities=21% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHH
Q ss_conf 699975998999999999998898999999979
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGA 36 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~ 36 (122)
.+.|+=||+..++-+.++....||+|....++.
T Consensus 27 ~l~Vlvd~~~a~~ni~~~a~~~G~~v~~~e~~~ 59 (67)
T cd03421 27 EIEVLVDNEVAKENVSRFAESRGYEVSVEEKGG 59 (67)
T ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 799998684178899999997799878998399
No 303
>PRK13180 consensus
Probab=40.13 E-value=33 Score=16.27 Aligned_cols=51 Identities=18% Similarity=0.247 Sum_probs=40.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH
Q ss_conf 6699975998999999999998898999999979999999718998999983655999799
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e 63 (122)
+||.|||=-..+...+...|+..|+++....+..+.- .+|.++ +|+...+.
T Consensus 2 kkI~IiDyg~gNi~Sv~~al~~~g~~~~i~~~~~~~~------~~d~lI----lPGVGsf~ 52 (209)
T PRK13180 2 KRVVVLDYGSGNLRSAQRALERVGAEVEVTADPDAAL------NADGLV----VPGVGAFA 52 (209)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHH------HCCEEE----ECCCCCHH
T ss_conf 7799997894389999999998699899979999995------389689----99988557
No 304
>PRK00811 spermidine synthase; Provisional
Probab=40.08 E-value=33 Score=16.26 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=47.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCC------EEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCH-----HHHHHHHHH
Q ss_conf 6699975998999999999998898------9999-999799999997189989999836559997-----999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGY------EVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG-----IELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~------~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG-----~el~~~ir~ 70 (122)
++|-+||=|+.+-+..++.|..... +|.. ..||.+.++.. ++.||+||+|..=|.--+ -++.+.+++
T Consensus 103 ~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~-~~~yDvII~D~tDP~gpa~~Lft~~Fy~~~~~ 181 (283)
T PRK00811 103 EKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRET-ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKR 181 (283)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHCCHHHHHHHHH
T ss_conf 67999946899999999983886313302971599827899999845-23554899808998864455345999999998
Q ss_pred HCCCCCEEEE
Q ss_conf 5899859999
Q gi|254780312|r 71 LDPDLKVMFI 80 (122)
Q Consensus 71 ~~~~~pii~~ 80 (122)
.-.+--|++.
T Consensus 182 ~L~~~Gi~v~ 191 (283)
T PRK00811 182 ALKEGGIFVA 191 (283)
T ss_pred HCCCCCEEEE
T ss_conf 5399958999
No 305
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=40.04 E-value=33 Score=16.26 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=49.8
Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 99999971899899998365599979999999985-89985999943797899999997699869976979899999999
Q gi|254780312|r 37 SAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115 (122)
Q Consensus 37 ~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~ 115 (122)
+-.+.+.+ ++|+=-...-+-.|+.+...++.. .|-+.+|.++ ..+..+..-+.=|.++++|+++++
T Consensus 44 ~vv~~in~---n~v~Wggdv~~~Eg~~va~~l~~~~fPfla~i~l~----------~~~m~vv~r~eG~~~p~el~~~L~ 110 (116)
T cd02991 44 EVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLK----------DNRMTIVGRLEGLIQPEDLINRLT 110 (116)
T ss_pred HHHHHHHH---CEEEEEEECCCHHHHHHHHHCCCCCCCEEEEEEEE----------CCCEEEEEEEECCCCHHHHHHHHH
T ss_conf 99999750---86999975597589999997688879958999970----------883489999526899899999999
Q ss_pred HHHHC
Q ss_conf 99603
Q gi|254780312|r 116 RLLTI 120 (122)
Q Consensus 116 ~~l~~ 120 (122)
++++.
T Consensus 111 ~~i~~ 115 (116)
T cd02991 111 FIMDA 115 (116)
T ss_pred HHHHC
T ss_conf 99856
No 306
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=39.96 E-value=33 Score=16.25 Aligned_cols=65 Identities=22% Similarity=0.129 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCC------------CHHHHHHHHHHHCCCCCEEEEE--CCCCHHHHHHHHHCCCC
Q ss_conf 997999999971899899998365599------------9799999999858998599994--37978999999976998
Q gi|254780312|r 33 NNGASAYDKVREEPFSLLLTDIVMPEM------------DGIELARRATELDPDLKVMFIT--GFAAVALNPDSNAPKNA 98 (122)
Q Consensus 33 ~~g~~al~~~~~~~~dlii~D~~mP~~------------dG~el~~~ir~~~~~~pii~~s--~~~~~~~~~~~~~~g~~ 98 (122)
-+.+++.+++.++ +.+|+|++-|.. .--++-..+.+..++.|++++- |......+....+.|..
T Consensus 7 Is~~e~~~~~~~~--~~~liDVR~~~e~~~gHI~gA~~ip~~~l~~~~~~~~~d~~ivv~C~~G~rS~~aa~~L~~~Gf~ 84 (104)
T PRK00162 7 INVEQAHQKLQEG--EAVLVDIRDPQSFAMGHAPGAFHLTNDSLGAFMRDADFDTPVMVMCYHGNSSQGAAQYLLQQGFD 84 (104)
T ss_pred ECHHHHHHHHHCC--CEEEEECCCHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCC
T ss_conf 4899999999789--93999899889996387578863898999999973688898899959881899999999973764
Q ss_pred E
Q ss_conf 6
Q gi|254780312|r 99 K 99 (122)
Q Consensus 99 ~ 99 (122)
.
T Consensus 85 ~ 85 (104)
T PRK00162 85 V 85 (104)
T ss_pred C
T ss_conf 3
No 307
>pfam04392 ABC_sub_bind ABC transporter substrate binding protein. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.
Probab=39.92 E-value=33 Score=16.25 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHCCCE
Q ss_conf 999999999988989
Q gi|254780312|r 14 MRRFLIKALGKAGYE 28 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~ 28 (122)
.++.+.+.|.+.||+
T Consensus 16 ~~~g~~~~L~~~G~~ 30 (292)
T pfam04392 16 IVDGIQEALKDFGYE 30 (292)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999975997
No 308
>pfam02684 LpxB Lipid-A-disaccharide synthetase. This is a family of lipid-A-disaccharide synthetases, EC:2.4.2.128. These enzymes catalyse the reaction: UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine + 2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate <= UDP + 2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6 -beta-D-2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl 1-phosphate. These enzymes catalyse the fist disaccharide step in the synthesis of lipid-A-disaccharide.
Probab=39.92 E-value=33 Score=16.25 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHHCCCCEEEE-EEECCCCCHH--HHHHHHHHHCCCCCEEEEEC
Q ss_conf 97189989999-8365599979--99999998589985999943
Q gi|254780312|r 42 VREEPFSLLLT-DIVMPEMDGI--ELARRATELDPDLKVMFITG 82 (122)
Q Consensus 42 ~~~~~~dlii~-D~~mP~~dG~--el~~~ir~~~~~~pii~~s~ 82 (122)
+.+.+||++|+ |.- || .+++.+|+..+++|++-..+
T Consensus 78 i~~~~PD~vIlID~p-----gFNlrlak~lkk~g~~ipvi~yV~ 116 (373)
T pfam02684 78 ILKKKPDTLILIDAP-----DFNLRLAKKLRKLGPKLKIIHYVS 116 (373)
T ss_pred HHHCCCCEEEEECCC-----CHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 742699889997176-----155999999997199987899968
No 309
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=39.49 E-value=34 Score=16.21 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH--HCCCCEEEECCCCH
Q ss_conf 99999999858998599994379789999999--76998699769798
Q gi|254780312|r 62 IELARRATELDPDLKVMFITGFAAVALNPDSN--APKNAKVLSKPFHL 107 (122)
Q Consensus 62 ~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~--~~g~~~~l~KP~~~ 107 (122)
.++++++|+..|+.-|.+.|||.-.+...+.. -.-++-.+-=||..
T Consensus 86 ~~l~~~~k~~~~~~~I~~yTGyt~eel~~~~~~lL~~iDvLVDG~f~~ 133 (154)
T PRK11121 86 LKLVKRVKAECPGKDIWLWTGYKLDELNAAQRQVVDLIDVLVDGKFEQ 133 (154)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCHHHHCHHHHHHHHHCCEEEECHHHH
T ss_conf 999999997589984999818638997888999997578765373665
No 310
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.32 E-value=34 Score=16.19 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCC-CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599-979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEM-DGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~-dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+.+.+++.||.+..+.+. .++++.+.++.+|-+|+- |.. +..+.++.+++ ..+|+|++
T Consensus 16 ~~~~gi~~~a~~~gy~lll~~t~~~~~~e~~~i~~l~~~~vDGiIi~---~~~~~~~~~~~~l~~--~~iPvV~i 85 (268)
T cd06289 16 ELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILC---PAAGTSPDLLKRLAE--SGIPVVLV 85 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 99999999999869989999589998999999999996599989994---688899999999997--59989983
No 311
>PRK09739 hypothetical protein; Provisional
Probab=39.05 E-value=34 Score=16.17 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=24.6
Q ss_pred CCEEEEECCCH-------HHHHHHHHHHHHCCCEEEEEC
Q ss_conf 86699975998-------999999999998898999999
Q gi|254780312|r 2 NQKILLAEDDD-------DMRRFLIKALGKAGYEVVSCN 33 (122)
Q Consensus 2 ~~rILiVDD~~-------~~r~~l~~~L~~~G~~v~~a~ 33 (122)
+||||||--+| .+.+.+...|++.|++|....
T Consensus 3 ~kkiLIV~aHP~~~S~~~ala~~~~~~l~~~GheV~v~D 41 (201)
T PRK09739 3 SERIYLVWAHPRHDSLTAKVADAIHQRAQERGIQVTELD 41 (201)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 777999973899865689999999999998799599997
No 312
>PRK08945 short chain dehydrogenase; Provisional
Probab=38.65 E-value=35 Score=16.13 Aligned_cols=80 Identities=15% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH----HH-CC--CCEEEEEEECCCCCH-HHHHHHHHHHCC
Q ss_conf 86699975998999999999998898999999979999999----71-89--989999836559997-999999998589
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----RE-EP--FSLLLTDIVMPEMDG-IELARRATELDP 73 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~----~~-~~--~dlii~D~~mP~~dG-~el~~~ir~~~~ 73 (122)
+|.+||.--...+-..++..|.+.|+.|.....-.+.++.+ .+ .. ..++-+|+.-.+... .++.+.+.+...
T Consensus 13 gK~~lITGas~GIG~aiA~~la~~Ga~Vil~~r~~~~l~~~~~el~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~~~~g 92 (245)
T PRK08945 13 DRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLGATEQNYQDLADTIEEQFG 92 (245)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 79899948861899999999998799899996988999999999997479844899944675999999999999999809
Q ss_pred CCCEEEEE
Q ss_conf 98599994
Q gi|254780312|r 74 DLKVMFIT 81 (122)
Q Consensus 74 ~~pii~~s 81 (122)
.+-+++..
T Consensus 93 ~iD~lVnN 100 (245)
T PRK08945 93 RLDGVLHN 100 (245)
T ss_pred CCCEEEEC
T ss_conf 98799988
No 313
>PRK03094 hypothetical protein; Provisional
Probab=38.62 E-value=35 Score=16.13 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE---EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 99999999988989999999799999997189989999---836559997999999998589985999943797899999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT---DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~---D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
..-++.+|++.||+|..-.+..+| +.+|+++. |-+|= |+ .......|||=-+|.+..+...+
T Consensus 10 Ls~v~~~L~~~GY~Vv~l~~~~~a------~~~Da~ViTG~d~N~m---Gi------qd~~t~~pVI~A~GlTaeEI~~~ 74 (80)
T PRK03094 10 LTDVQQALKQKGYEVVTLNSEQDA------QGCDCCVVTGQDSNVM---GI------ADTSTKGSVITASGLTADEICQQ 74 (80)
T ss_pred CHHHHHHHHHCCCEEEECCCCCCC------CCCCEEEEECCCCCCC---CC------CCCCCCCCEEECCCCCHHHHHHH
T ss_conf 259999999779878966871433------5678899958976522---64------41345687486789999999999
Q ss_pred HH
Q ss_conf 99
Q gi|254780312|r 92 SN 93 (122)
Q Consensus 92 ~~ 93 (122)
..
T Consensus 75 ve 76 (80)
T PRK03094 75 VE 76 (80)
T ss_pred HH
T ss_conf 99
No 314
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=38.57 E-value=35 Score=16.12 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=66.6
Q ss_pred EECCCHHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHHHHHH-HHHH-CCCCCEEEE
Q ss_conf 9759989999999999988--98999999979999999718--9989999836559997999999-9985-899859999
Q gi|254780312|r 7 LAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIELARR-ATEL-DPDLKVMFI 80 (122)
Q Consensus 7 iVDD~~~~r~~l~~~L~~~--G~~v~~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~el~~~-ir~~-~~~~pii~~ 80 (122)
.|=-.|......+..|+.. +++...++|-.+|.+++.+. .....|.--.--..-|++.+.. |... +..++++++
T Consensus 101 ~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~ygL~il~~~I~D~~~N~TRF~vl 180 (279)
T COG0077 101 TVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLDILAENIEDEPNNRTRFLVL 180 (279)
T ss_pred EEEECCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHHHHHCCCHHHHHCCCCCCCCEEEEEEE
T ss_conf 88747289999999999728883699817889999999728986736876987897739576761355788885789999
Q ss_pred ECC-CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 437-978999999976998699769798999999999
Q gi|254780312|r 81 TGF-AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 81 s~~-~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
+-. ... .. . ......-.+.=|=.+..|.+.+..
T Consensus 181 ~r~~~~~-~~-~-~~~kTsl~f~~~n~PGaL~~~L~~ 214 (279)
T COG0077 181 SRRKPPS-VS-D-GPEKTSLIFSVPNKPGALYKALGV 214 (279)
T ss_pred ECCCCCC-CC-C-CCCEEEEEEECCCCCCHHHHHHHH
T ss_conf 6567877-68-8-773499999859987049999999
No 315
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=38.41 E-value=35 Score=16.11 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH----HHHC--CCCEEEEEEECCCCCHHH-HHHHHHHHCC
Q ss_conf 98669997599899999999999889899999997999999----9718--998999983655999799-9999998589
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREE--PFSLLLTDIVMPEMDGIE-LARRATELDP 73 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~----~~~~--~~dlii~D~~mP~~dG~e-l~~~ir~~~~ 73 (122)
|+|.+||.--...+-..++..|-+.|+.|..+.--.+.++. +.+. ...++..-..+-+.+..+ +.+++.+...
T Consensus 1 mnKvalITG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 80 (259)
T PRK12384 1 MNKVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf 99789994688689999999999879999999798899999999998624886089998327999999999999999829
Q ss_pred CCCEEEE
Q ss_conf 9859999
Q gi|254780312|r 74 DLKVMFI 80 (122)
Q Consensus 74 ~~pii~~ 80 (122)
.+-+++-
T Consensus 81 ~iDilVn 87 (259)
T PRK12384 81 RVDLLVY 87 (259)
T ss_pred CCCEEEE
T ss_conf 9719998
No 316
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=38.31 E-value=35 Score=16.10 Aligned_cols=45 Identities=20% Similarity=0.476 Sum_probs=38.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 66999759989999999999988989999999799999997189989999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~ 52 (122)
++|.|.+-++..++.+...++..|+.+..+.|.++|+.-. |+|++
T Consensus 155 ~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~~av~~A-----DIIvt 199 (312)
T pfam02423 155 EEIRIYDRDPEAAEKFARNLQGKGFEIVACTSAEEAVEGA-----DIVVT 199 (312)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHHHHCC-----CEEEE
T ss_conf 6899996898999999999983499659948999997149-----98999
No 317
>PRK09072 short chain dehydrogenase; Provisional
Probab=38.21 E-value=35 Score=16.09 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=52.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 8669997599899999999999889899999997999999971----899899998365599979999999985899859
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFSLLLTDIVMPEMDGIELARRATELDPDLKV 77 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~----~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pi 77 (122)
+|+|||.--...+-..++..|.+.|+.|..++--.+.++.+.+ .....+..|+.-+ +..+.+.+.-+....+-+
T Consensus 5 ~K~vlITGassGIG~a~A~~la~~G~~vil~~R~~~~L~~~~~~l~~~~~~~~~~Dls~~--~~~~~~~~~~~~~g~iDi 82 (262)
T PRK09072 5 DKRVLLTGASGGIGEALAEALCAAGARLLLVGRNAEKLEALAARPYPGRVRWVVADLTSE--AGREAVLARAREMGGINV 82 (262)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEEECCCH--HHHHHHHHHHHHHCCCCE
T ss_conf 988999486239999999999987998999989899999999984589769999717999--999999999998499989
Q ss_pred EEE
Q ss_conf 999
Q gi|254780312|r 78 MFI 80 (122)
Q Consensus 78 i~~ 80 (122)
++-
T Consensus 83 LIn 85 (262)
T PRK09072 83 LIN 85 (262)
T ss_pred EEE
T ss_conf 998
No 318
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=37.94 E-value=36 Score=16.06 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH---HHHHH--CCCCCEEEE
Q ss_conf 89999999999988989999-99979999999718998999983655999799999---99985--899859999
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR---RATEL--DPDLKVMFI 80 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~---~ir~~--~~~~pii~~ 80 (122)
....+-++...+..|..++. |.+..++-+.+....||++++ |-++-- .+++. ....|+-++
T Consensus 15 Smlv~km~~~A~~~G~dveI~Av~~~e~~~~i~~~~yDv~Ll--------gPQVr~~~~~~k~~a~~~giPv~vI 81 (104)
T PRK09590 15 SLMAKKTTEFLKGKGKDIEVDAISATEGGKAIAAAAFDLYLV--------SPQTKMYFKQFEEAGSKAGKPVVQI 81 (104)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCCCEEEE--------CHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999999769836999848889887632268878998--------8768878999999998729977887
No 319
>PRK05986 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=37.89 E-value=36 Score=16.06 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred HHHHHHH----HHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHH
Q ss_conf 9999999----718998999983655-----99979999999985899859999437978999
Q gi|254780312|r 36 ASAYDKV----REEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKVMFITGFAAVALN 89 (122)
Q Consensus 36 ~~al~~~----~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~ 89 (122)
.++|+.. .+..||++|+|-.+. -++--++++.+++ .|.---+++||....+..
T Consensus 100 ~~~~~~a~~~l~~~~~dlvVLDEi~~Al~~gll~~eevi~~L~~-rp~~~evVLTGR~~p~~L 161 (190)
T PRK05986 100 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDLEEVLEALNN-RPGMQHVVITGRGAPREL 161 (190)
T ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHH
T ss_conf 99999999998588888895376799985599589999999982-899876999799999999
No 320
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=37.50 E-value=36 Score=16.02 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHCC-CCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE------EC
Q ss_conf 9799999997189-989999836559-997--9999999985899859999437978999999976998699------76
Q gi|254780312|r 34 NGASAYDKVREEP-FSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL------SK 103 (122)
Q Consensus 34 ~g~~al~~~~~~~-~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l------~K 103 (122)
+..+.++.+.+.. -.++++|+.--+ +.| +++++++.+ ..++|++.--|.+..+.-.+..+.|+++.+ ..
T Consensus 149 ~~~e~~~~~~~~g~~eii~tdI~~dGt~~G~d~~~~~~i~~-~~~~pviasGGv~s~~di~~l~~~g~~gvivG~Al~~g 227 (240)
T PRK13585 149 DPVEWAQRFEELGAGSILFTNVDVEGLLQGVNPEPVRELVD-SVDIPVIASGGVTSLDDVKALKEAGAAGVVVGSALYKG 227 (240)
T ss_pred CHHHHHHHHHHCCCCEEEEEEECCHHHHCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHHHHCC
T ss_conf 35577788886387358986423322325789899999998-68999999889999999999997899789987687679
Q ss_pred CCCHHHHHHHHH
Q ss_conf 979899999999
Q gi|254780312|r 104 PFHLRDLVNEVN 115 (122)
Q Consensus 104 P~~~~~L~~~i~ 115 (122)
-++.+++.+.++
T Consensus 228 ~i~l~e~~~~~~ 239 (240)
T PRK13585 228 KFTLEEALEAAE 239 (240)
T ss_pred CCCHHHHHHHHH
T ss_conf 978999999964
No 321
>PRK06823 ornithine cyclodeaminase; Validated
Probab=37.42 E-value=36 Score=16.01 Aligned_cols=40 Identities=8% Similarity=0.055 Sum_probs=36.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 6699975998999999999998898999999979999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV 42 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~ 42 (122)
++|.|.+-++..++.+...++..|+.+..+.+.+++.+-.
T Consensus 154 ~~v~v~~r~~~~~~~f~~~~~~~~~~v~~~~~~~eav~~A 193 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAA 193 (315)
T ss_pred EEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf 0999946997999999999986199079948999997427
No 322
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=37.37 E-value=26 Score=16.91 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=23.9
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 999999999889899999997999999971899899998365599979999999985899859999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
...++..|...|++|.....=.+ ||.++.|.. | ..+......+.. .+.-++.+
T Consensus 17 ~~~la~~~a~~g~~vl~iD~DpQ---------yD~iiIDtp-p-~~~~~~~~al~~--aD~viiP~ 69 (104)
T cd02042 17 AVNLAAALARRGKRVLLIDLDPQ---------YDYIIIDTP-P-SLGLLTRNALAA--ADLVLIPV 69 (104)
T ss_pred HHHHHHHHHHCCCEEEEEECCCC---------CCEEEEECC-C-CCCHHHHHHHHH--CCEEEEEC
T ss_conf 99999999977992999977988---------888999794-9-998999999997--89999983
No 323
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=37.23 E-value=37 Score=15.99 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=47.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH---CCCCEEEEEEECCCCCHHHHHHHHHHHC-CCCC
Q ss_conf 98669997599899999999999889899999997999999971---8998999983655999799999999858-9985
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMDGIELARRATELD-PDLK 76 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~---~~~dlii~D~~mP~~dG~el~~~ir~~~-~~~p 76 (122)
|-+||=||-|-.++. -++..|+++..+.+.+||.+.+++ +.|.+|++--.+ +-++-+.|++.. ..+|
T Consensus 2 ~myKIaVvGd~Dsvl-----gF~~lG~dvfpv~~~eEa~~~l~~La~~~y~II~ITE~~----a~~i~~~i~~y~~~~lP 72 (104)
T PRK01395 2 TMYKIGVIGDKDSIL-----PFKALGFDVFPVIEEQEARNTLRKLAMEDYAIIYITEDI----AKDIPETIERYDNQVLP 72 (104)
T ss_pred CCEEEEEECCHHHHH-----HHHHCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEEHHH----HHHHHHHHHHHHCCCCC
T ss_conf 721799986857878-----888658047854887999999999986792799972999----84569999998525787
Q ss_pred EE-EEECCC
Q ss_conf 99-994379
Q gi|254780312|r 77 VM-FITGFA 84 (122)
Q Consensus 77 ii-~~s~~~ 84 (122)
.| .+-+.+
T Consensus 73 aII~IP~~~ 81 (104)
T PRK01395 73 AIILIPSNQ 81 (104)
T ss_pred EEEECCCCC
T ss_conf 799868998
No 324
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=37.01 E-value=37 Score=15.97 Aligned_cols=62 Identities=10% Similarity=0.066 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+.+.+...+++.||.+..+.+. .+.++.+.++.+|-+|+ ++...--+..+.+++ ..+|++++
T Consensus 17 l~~gie~~~~~~gy~~li~~s~~~~~~e~~~i~~l~~~~vDGiI~---~~~~~~~~~~~~l~~--~~~PvV~i 84 (268)
T cd06298 17 LARGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIF---MGGKISEEHREEFKR--SPTPVVLA 84 (268)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 999999999987998999989999899999999999669999998---267799999999996--69989995
No 325
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=36.86 E-value=37 Score=15.96 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=48.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE-EEEC-CCCCH---HHHHHHHHHH-CCCCC
Q ss_conf 66999759989999999999988989999999799999997189989999-8365-59997---9999999985-89985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT-DIVM-PEMDG---IELARRATEL-DPDLK 76 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~-D~~m-P~~dG---~el~~~ir~~-~~~~p 76 (122)
.+|||+|-....-..+.+.+++.||.....-.-..-.+.++...||.+|+ .--| ...++ -.....|++. .|..|
T Consensus 2 ~~ilIld~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~p 81 (198)
T COG0518 2 RKILILDFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKP 81 (198)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 57999957970767999999873982699985788801156668888998589887764433305578999971888887
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999437978999
Q gi|254780312|r 77 VMFITGFAAVALN 89 (122)
Q Consensus 77 ii~~s~~~~~~~~ 89 (122)
++-+ =++.+-++
T Consensus 82 vLGI-C~G~Ql~A 93 (198)
T COG0518 82 VLGI-CLGHQLLA 93 (198)
T ss_pred EEEE-CHHHHHHH
T ss_conf 8998-76189999
No 326
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase; InterPro: IPR011800 Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulphate reductase catalyzes the reduction of 3'-phosphoadenylylsulphate (PAPS) to sulphite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (IPR004508 from INTERPRO) and bacterial (IPR011798 from INTERPRO) enzymes preferring 5'-adenylylsulphate (APS) over PAPS as a substrate for reduction to sulphite.; GO: 0004604 phosphoadenylyl-sulfate reductase (thioredoxin) activity, 0019344 cysteine biosynthetic process.
Probab=36.84 E-value=17 Score=18.04 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=27.2
Q ss_pred EECCHHHHHHHHHHC-CC-CEEEE-EEECCCCCHHHHHHHHH-HHCCCCCEEEE-ECCCCH
Q ss_conf 999979999999718-99-89999-83655999799999999-85899859999-437978
Q gi|254780312|r 31 SCNNGASAYDKVREE-PF-SLLLT-DIVMPEMDGIELARRAT-ELDPDLKVMFI-TGFAAV 86 (122)
Q Consensus 31 ~a~~g~~al~~~~~~-~~-dlii~-D~~mP~~dG~el~~~ir-~~~~~~pii~~-s~~~~~ 86 (122)
.+.++++-+++.-++ |. .+|.+ -.++-+.=-+.++..+. +.++++|||++ |+|--.
T Consensus 10 ~~~ta~~iiAWs~~~~P~G~Lv~tsaFg~~~lV~~hll~~~~keky~~~pvif~DTly~F~ 70 (239)
T TIGR02057 10 KLTTAQEIIAWSIETFPTGELVQTSAFGIQALVILHLLSSILKEKYPDIPVIFIDTLYLFP 70 (239)
T ss_pred HCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 0137457999998755999745301020478999999999876217998678621113627
No 327
>pfam00465 Fe-ADH Iron-containing alcohol dehydrogenase.
Probab=36.48 E-value=38 Score=15.92 Aligned_cols=65 Identities=22% Similarity=0.268 Sum_probs=41.6
Q ss_pred CCEEEEECCCHH----HHHHHHHHHHHCCCEEEEECC---------HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 866999759989----999999999988989999999---------7999999971899899998365599979999999
Q gi|254780312|r 2 NQKILLAEDDDD----MRRFLIKALGKAGYEVVSCNN---------GASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 2 ~~rILiVDD~~~----~r~~l~~~L~~~G~~v~~a~~---------g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
.+|+|||-|... ...-+...|+..|.++....+ ..++.+.+++..+|+||- .-+-+-++.++.+
T Consensus 22 g~r~llVt~~~~~~~g~~~~l~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa---iGGGS~iD~aK~i 98 (312)
T pfam00465 22 GARALIVTDPSLKKLGLLDRVLDSLEEAGIEVVVFDGVEPNPTLEEVDEAAAAAREEGADVIIA---VGGGSVIDTAKAI 98 (312)
T ss_pred CCEEEEEECCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCCHHHHHH
T ss_conf 9979999895856676399999999974994999858279999999999999999649989998---0897612499999
Q ss_pred H
Q ss_conf 9
Q gi|254780312|r 69 T 69 (122)
Q Consensus 69 r 69 (122)
.
T Consensus 99 a 99 (312)
T pfam00465 99 A 99 (312)
T ss_pred H
T ss_conf 9
No 328
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=36.46 E-value=38 Score=15.92 Aligned_cols=85 Identities=12% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHH
Q ss_conf 99999999988989999999799999997189989999836559997999999998589-98599994379789999999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP-DLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~-~~pii~~s~~~~~~~~~~~~ 93 (122)
-+.+..-+--|||.+..-+|....+..+...- |......+|.... ..|.+++......
T Consensus 50 i~~l~~nfv~wgwDvt~~sN~~~fl~~~~~~~--------------gs~as~t~r~~~~d~~P~l~iV~~~rs------- 108 (136)
T cd02990 50 VQYLSQNFITWGWDMTKESNKARFLSSCTRHF--------------GSVAAQTIRNIKTDQLPAILIIMGKRS------- 108 (136)
T ss_pred HHHHHHCEEEEECCCCCHHHHHHHHHHHHHHH--------------CHHHHHHHHHCCCCCCCEEEEEEECCC-------
T ss_conf 99998365583201576567899999998750--------------648999998365244886765664465-------
Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 769986997697989999999999603
Q gi|254780312|r 94 APKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 94 ~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
...+..++.-+..+++|+.++.++.+.
T Consensus 109 ~~evl~vi~Gn~~~dELl~~L~~~~E~ 135 (136)
T cd02990 109 SNEVLNVIQGNTGVDELLMRLIEAMEM 135 (136)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 423423353799999999999998760
No 329
>pfam00977 His_biosynth Histidine biosynthesis protein. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in this family. Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. The enzymes in this Pfam entry are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. The structure of HisA is known to be a TIM barrel fold. In some archaeal HisA proteins the TIM barrel is composed of two tandem repeats of a half barrel. This family belong to the common phosphate binding site TIM barrel family.
Probab=36.40 E-value=38 Score=15.91 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=39.7
Q ss_pred HHHHHHHHHC-CCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999999718-9989999836559-997--99999999858998599994379789999999769986997
Q gi|254780312|r 36 ASAYDKVREE-PFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 36 ~~al~~~~~~-~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
.+.++.+.+. .-.++++|+.--+ +.| +++++.+++ ..+.|+|.--|.+..+.-.+..+.|+++.+.
T Consensus 150 ~~~i~~~~~~g~~eii~tdi~~dGt~~G~d~~l~~~i~~-~~~~pii~~GGv~~~~di~~l~~~g~~gviv 219 (229)
T pfam00977 150 VEWAKKLEELGAGEILLTDIDRDGTLSGPDLELTRELAE-AVNIPVIASGGVGSLEDLKELFSEGVDGVIA 219 (229)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 344567765167506887750427566689999999997-6899899985899999999999879989998
No 330
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.33 E-value=38 Score=15.91 Aligned_cols=92 Identities=9% Similarity=0.088 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC-
Q ss_conf 899999999999889899999997------9999999718998999983655999799999999858998599994379-
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA- 84 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~- 84 (122)
..+.+.+...+++.||.+..+.+. .+.++.+.+...|-+|+- +..+ -+.++.+++ .++|++++....
T Consensus 18 ~~l~~gie~~~~~~Gy~lll~~~~~~~~~e~~~~~~l~~~~vdGiI~~---~~~~-~~~~~~l~~--~~~P~V~id~~~~ 91 (268)
T cd06277 18 SEIYRAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILL---GGIS-TEYIKEIKE--LGIPFVLVDHYIP 91 (268)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCC-HHHHHHHHH--CCCCEEEECCCCC
T ss_conf 999999999999849989999389998999999999994898789997---8999-799999997--5998999677689
Q ss_pred ----------CH----HHHHHHHHCCCC--EEEECCCCHHH
Q ss_conf ----------78----999999976998--69976979899
Q gi|254780312|r 85 ----------AV----ALNPDSNAPKNA--KVLSKPFHLRD 109 (122)
Q Consensus 85 ----------~~----~~~~~~~~~g~~--~~l~KP~~~~~ 109 (122)
+. .......+.|.. .|+..|.....
T Consensus 92 ~~~~~~V~~Dn~~a~~~a~~~L~~~Ghr~I~~i~~~~~~~~ 132 (268)
T cd06277 92 NEKADCVLTDNYSGAYAATEYLIEKGHRKIGFVGDPLYSPS 132 (268)
T ss_pred CCCCCEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 99998899665999999999999709983699727888812
No 331
>PRK08251 short chain dehydrogenase; Provisional
Probab=36.20 E-value=38 Score=15.89 Aligned_cols=80 Identities=11% Similarity=0.232 Sum_probs=50.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH----CCCC--EEEEEEECCCCCH-HHHHHHHHHHCCC
Q ss_conf 8669997599899999999999889899999997999999971----8998--9999836559997-9999999985899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFS--LLLTDIVMPEMDG-IELARRATELDPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~----~~~d--lii~D~~mP~~dG-~el~~~ir~~~~~ 74 (122)
.|+|||.--+..+-..++..|...|+.|..+..-.+.++.+.+ ..++ +.+.-..+-+.+. .++.+++.+....
T Consensus 2 ~K~vlITGAssGIG~alA~~la~~G~~v~l~~r~~~~l~~~~~el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~~g~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99899947863999999999998799899998988899999999987379973999978678689999999999998099
Q ss_pred CCEEEEE
Q ss_conf 8599994
Q gi|254780312|r 75 LKVMFIT 81 (122)
Q Consensus 75 ~pii~~s 81 (122)
+-+++..
T Consensus 82 iD~lvnN 88 (248)
T PRK08251 82 LDRVIVN 88 (248)
T ss_pred CCEEEEC
T ss_conf 9899985
No 332
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=35.93 E-value=38 Score=15.87 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=56.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC----CCEEEEECCH-----H---HHHHHHHHCCCCEEEEEE--ECCCCCHH-HHHH
Q ss_conf 866999759989999999999988----9899999997-----9---999999718998999983--65599979-9999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKA----GYEVVSCNNG-----A---SAYDKVREEPFSLLLTDI--VMPEMDGI-ELAR 66 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~----G~~v~~a~~g-----~---~al~~~~~~~~dlii~D~--~mP~~dG~-el~~ 66 (122)
.|+||++=-|. +|-...+.|+.| |..|.....| + +|++...+..+|++|.|- +|+.-..+ +=++
T Consensus 110 Gk~V~laAgDT-FRAAA~EQL~~Wa~R~gv~vi~~~~gn~DPAaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~EL~ 188 (284)
T TIGR00064 110 GKSVLLAAGDT-FRAAAIEQLEVWAKRLGVDVIKQKEGNADPAAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMDELK 188 (284)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHH
T ss_conf 99089982752-47999999999898838755407889887178999989999874997899734754546620399999
Q ss_pred HHH----HHCC----CCCEEEEECCCCHHHHHHHH----HCCCCE-EEEC
Q ss_conf 999----8589----98599994379789999999----769986-9976
Q gi|254780312|r 67 RAT----ELDP----DLKVMFITGFAAVALNPDSN----APKNAK-VLSK 103 (122)
Q Consensus 67 ~ir----~~~~----~~pii~~s~~~~~~~~~~~~----~~g~~~-~l~K 103 (122)
+|+ +..+ +-.++++=|...+....||. ..+.++ .|+|
T Consensus 189 KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav~ltGiiLTK 238 (284)
T TIGR00064 189 KIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILTK 238 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99998732102578755754220222030899999986540688589963
No 333
>TIGR02483 PFK_mixed phosphofructokinase; InterPro: IPR012829 Members of this family that are characterised, save one, are phosphofructokinases dependent on pyrophosphate (2.7.1.90 from EC) rather than ATP (2.7.1.11 from EC). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.; GO: 0005524 ATP binding, 0008443 phosphofructokinase activity, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=35.82 E-value=27 Score=16.75 Aligned_cols=103 Identities=17% Similarity=0.230 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-------------C--CCCEEEEEEECCCCCHHHHHH--------HHHH
Q ss_conf 9999999999889899999997999999971-------------8--998999983655999799999--------9998
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------------E--PFSLLLTDIVMPEMDGIELAR--------RATE 70 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-------------~--~~dlii~D~~mP~~dG~el~~--------~ir~ 70 (122)
+-+-+..-+.+.|..+..|=-|+.-|..+++ . .=|+-=+|+.+ ||+.+- +++.
T Consensus 94 vSd~~~~n~~~~GlDAlIaIGGdGTL~~A~~l~~~GGl~vVGVPKTIDNDl~~TD~TF----GFDTAv~iATEAlDRLht 169 (339)
T TIGR02483 94 VSDKIVANLKELGLDALIAIGGDGTLGIARRLADKGGLPVVGVPKTIDNDLEATDYTF----GFDTAVEIATEALDRLHT 169 (339)
T ss_pred CCHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCEE----CCCCHHHHHHHHHHHHHH
T ss_conf 2089999899649818998668726899999996589854741577546753244022----210078999998752400
Q ss_pred H-CCCCCEEEEECCCCH---HHHHHHHHCCCCEEEEC--CCCHHHHHHHHHHHHHC
Q ss_conf 5-899859999437978---99999997699869976--97989999999999603
Q gi|254780312|r 71 L-DPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSK--PFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 71 ~-~~~~pii~~s~~~~~---~~~~~~~~~g~~~~l~K--P~~~~~L~~~i~~~l~~ 120 (122)
+ .++-+|+++=-++-. -.-...+.-||+..|.- ||+.+++.++|++.-+.
T Consensus 170 TAeSH~RVmVvEVMGRhAGWIAL~sG~aGGAd~ILIPE~P~d~~~v~~~v~~r~~~ 225 (339)
T TIGR02483 170 TAESHHRVMVVEVMGRHAGWIALHSGIAGGADVILIPEIPFDIDSVCEKVRERFAR 225 (339)
T ss_pred HHHHHCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 58731948999984854579998843520876789786048889999999999872
No 334
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=35.66 E-value=39 Score=15.84 Aligned_cols=32 Identities=19% Similarity=0.406 Sum_probs=26.8
Q ss_pred CCCEE-EEECCCHHHHHHHHHHHHHCCCEEEEE
Q ss_conf 98669-997599899999999999889899999
Q gi|254780312|r 1 MNQKI-LLAEDDDDMRRFLIKALGKAGYEVVSC 32 (122)
Q Consensus 1 M~~rI-LiVDD~~~~r~~l~~~L~~~G~~v~~a 32 (122)
|.+.+ ++||+.+.+..-++..|++.||-+++-
T Consensus 1 mr~tisvlveN~~GvL~RisglFsrRg~NI~SL 33 (161)
T PRK11895 1 MRHTLSVLVENEPGVLSRVAGLFSRRGYNIESL 33 (161)
T ss_pred CCEEEEEEEECCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 945999999778679999999985068654666
No 335
>PRK01581 speE spermidine synthase; Validated
Probab=35.60 E-value=39 Score=15.84 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=46.7
Q ss_pred CEEEEECCCHHHHHHHHHH--HHHCC------CEEEEECCHHHHHHHHHH--CCCCEEEEEEECCCCCHH------HHHH
Q ss_conf 6699975998999999999--99889------899999997999999971--899899998365599979------9999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKA--LGKAG------YEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI------ELAR 66 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~--L~~~G------~~v~~a~~g~~al~~~~~--~~~dlii~D~~mP~~dG~------el~~ 66 (122)
++|-+||=|+.+-++.+.. |...+ =+|.... .+|+.++++ ..||+||+|+-=|+--.+ ++.+
T Consensus 164 e~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn--~DAf~wL~~~~~~FDvIIVDlPDP~n~~L~KLYS~eFY~ 241 (363)
T PRK01581 164 LHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHV--CDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFA 241 (363)
T ss_pred CEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEE--CCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 627899569999998751979987512001498049992--108999861675442899958999862466673599999
Q ss_pred HHHHH-CCCCCEEEEEC
Q ss_conf 99985-89985999943
Q gi|254780312|r 67 RATEL-DPDLKVMFITG 82 (122)
Q Consensus 67 ~ir~~-~~~~pii~~s~ 82 (122)
.+++. .++-.+++=|+
T Consensus 242 Ll~~~La~dG~~vVQST 258 (363)
T PRK01581 242 RIATFLTEDGAFVCQSN 258 (363)
T ss_pred HHHHHCCCCCEEEEEEC
T ss_conf 99986198853999607
No 336
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=35.47 E-value=39 Score=15.82 Aligned_cols=82 Identities=13% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCC-EEEEECCCHHHHHHHHHHHHHCCCEEEEE--CC---HHHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCC
Q ss_conf 986-69997599899999999999889899999--99---79999999718998999983655999799-9999998589
Q gi|254780312|r 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSC--NN---GASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDP 73 (122)
Q Consensus 1 M~~-rILiVDD~~~~r~~l~~~L~~~G~~v~~a--~~---g~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~ 73 (122)
|++ .+||.--...+-..+.+.|.+.|+.|... .+ ..+..+..+....+++.....+-+.+..+ +.+++.+...
T Consensus 1 L~~KvalVTGgs~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~i~~~~g 80 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG 80 (246)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCC
T ss_conf 95098999185869999999999987998999479981789999999984599789996787999999999999999759
Q ss_pred CCCEEEEEC
Q ss_conf 985999943
Q gi|254780312|r 74 DLKVMFITG 82 (122)
Q Consensus 74 ~~pii~~s~ 82 (122)
.+-+++-.+
T Consensus 81 ~idiLVNNA 89 (246)
T PRK12938 81 EIDVLVNNA 89 (246)
T ss_pred CCCEEEECC
T ss_conf 998999898
No 337
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=35.30 E-value=39 Score=15.81 Aligned_cols=90 Identities=19% Similarity=0.090 Sum_probs=58.0
Q ss_pred CEEEE-ECCCH---HHHHHHHHHHHHCCCEEEE---EC----CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999-75998---9999999999988989999---99----97999999971899899998365599979999999985
Q gi|254780312|r 3 QKILL-AEDDD---DMRRFLIKALGKAGYEVVS---CN----NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILi-VDD~~---~~r~~l~~~L~~~G~~v~~---a~----~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+|+-+ .+|+. ...+.++..+++.|+++.. .. |-...+..+++..+|+|++-. .+.-++..+++++++.
T Consensus 139 k~vaii~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i~~~~pD~v~~~~-~~~~~~~~~~~q~~~~ 217 (347)
T cd06336 139 KKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGG-PSPAPAALVIKQAREL 217 (347)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC-CCCHHHHHHHHHHHHC
T ss_conf 789999237604699999999987525976999995488866779999999965969999916-6735799999999976
Q ss_pred CCCCCEEEEECCCCHHHHHHHH
Q ss_conf 8998599994379789999999
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSN 93 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~ 93 (122)
..+.|++..++...........
T Consensus 218 G~~~~~~~~~~~~~~~~~~~~~ 239 (347)
T cd06336 218 GFKGGFLSCTGDKYDELLVATG 239 (347)
T ss_pred CCCCCEEEECCCCCHHHHHHHH
T ss_conf 9987589865766679999853
No 338
>PRK00074 guaA GMP synthase; Reviewed
Probab=35.11 E-value=40 Score=15.79 Aligned_cols=50 Identities=10% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEE
Q ss_conf 866999759989999999999988989999999799999997189989999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~ 52 (122)
..+|||+|--...-+.+++.+++.|...+....- ..++.+....|..||+
T Consensus 4 ~~~IlIlDFGSQytqLIaRRvRElgVysEI~p~~-~~~~~i~~~~pkgIIL 53 (513)
T PRK00074 4 HDKILILDFGSQYTQLIARRVRELGVYSEIVPYD-ISAEEIRAFNPKGIIL 53 (513)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-CCHHHHHHCCCCEEEE
T ss_conf 6869999889649999999998238359996699-9989985049978998
No 339
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=34.99 E-value=40 Score=15.78 Aligned_cols=91 Identities=14% Similarity=0.149 Sum_probs=57.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCE-EEEEC---CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 6999759989999999999988989-99999---9799999997189989999836559997999999998589985999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCN---NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~-v~~a~---~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
|||+.|.-. ......|+..||. |.... +.++-++.+ ..+|.+++- +...+.+++-+..|++.+|.
T Consensus 12 kiL~~d~i~---~~~~~~L~~~G~~~v~~~~~~l~~eeL~~~i--~~~d~liiR------S~t~vt~~vi~~a~~Lk~I~ 80 (409)
T PRK11790 12 KFLLLEGIH---QSAVEVLRAAGYTNIEYHKGALDEEELKEAI--KDAHFIGIR------SRTQLTEEVLEAAEKLVAIG 80 (409)
T ss_pred EEEEECCCC---HHHHHHHHHCCCEEEEECCCCCCHHHHHHHH--CCCCEEEEC------CCCCCCHHHHHCCCCCEEEE
T ss_conf 799807889---8999999977997788268999999999985--679899991------79873999994399971999
Q ss_pred EECCCCHHHHH-HHHHCCCCEEEECCCC
Q ss_conf 94379789999-9997699869976979
Q gi|254780312|r 80 ITGFAAVALNP-DSNAPKNAKVLSKPFH 106 (122)
Q Consensus 80 ~s~~~~~~~~~-~~~~~g~~~~l~KP~~ 106 (122)
..|.+-...-. .|.+.|+.-+- -|..
T Consensus 81 r~GvG~dnIDl~aa~~~GI~V~N-tPg~ 107 (409)
T PRK11790 81 CFCIGTNQVDLDAAAKRGIPVFN-APFS 107 (409)
T ss_pred ECCCCCCCCCHHHHHHCCCEEEE-CCCC
T ss_conf 83215774089999869948996-9997
No 340
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=34.86 E-value=40 Score=15.76 Aligned_cols=85 Identities=22% Similarity=0.190 Sum_probs=56.2
Q ss_pred CEEEEE-CCC---HHHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-599---899999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDD---DDMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~---~~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|+ ......+...+++.|.++... .|-..-+..+++..||+|++ ..+.-++..++++.++.
T Consensus 142 k~vaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~l~~i~~~~pd~i~~--~~~~~~~~~~~~q~~~~ 219 (345)
T cd06338 142 KKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVV--AGHFPDAVLLVRQMKEL 219 (345)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEE--CCCCCHHHHHHHHHHHC
T ss_conf 6899996486303689999999998659749999971798765899999998679999999--07771599999999976
Q ss_pred CCCCCEEEEEC-CCCHHHH
Q ss_conf 89985999943-7978999
Q gi|254780312|r 72 DPDLKVMFITG-FAAVALN 89 (122)
Q Consensus 72 ~~~~pii~~s~-~~~~~~~ 89 (122)
.-+.|++..+. .......
T Consensus 220 G~~~~~~~~~~~~~~~~~~ 238 (345)
T cd06338 220 GYNPKALYMTVGPAFPAFV 238 (345)
T ss_pred CCCCCEEEEECCCCCHHHH
T ss_conf 9998889984466789999
No 341
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=34.85 E-value=40 Score=15.76 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=34.8
Q ss_pred CCEEEEECCCH-------HHHHHHHHHHHHCCCEEE---EECCHHHHH----HHH-HHCCCCEEEEE
Q ss_conf 86699975998-------999999999998898999---999979999----999-71899899998
Q gi|254780312|r 2 NQKILLAEDDD-------DMRRFLIKALGKAGYEVV---SCNNGASAY----DKV-REEPFSLLLTD 53 (122)
Q Consensus 2 ~~rILiVDD~~-------~~r~~l~~~L~~~G~~v~---~a~~g~~al----~~~-~~~~~dlii~D 53 (122)
+-.|+.|.|.. .+...+.+.|++.||+|. .+.|..+.+ ..+ .+..+|+||+-
T Consensus 2 ~~~Vitvsd~~~~G~~~D~sG~~l~~~l~~~G~~v~~~~ivpDd~~~I~~~l~~~~~~~~~DlIitt 68 (152)
T cd00886 2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTT 68 (152)
T ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 8999998887767998775699999999874997889999599989999999999853698889966
No 342
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=34.82 E-value=34 Score=16.17 Aligned_cols=42 Identities=21% Similarity=0.531 Sum_probs=28.0
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 998599994379789999999769986997697989999999999603
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
++..++++|-++.. +.+. ...++.-|++.+++.++|+++|+.
T Consensus 386 ~~~GvLILSefaGa-----a~~L-~~Al~VNP~d~~~~a~ai~~AL~M 427 (460)
T cd03788 386 DDPGVLILSEFAGA-----AEEL-SGALLVNPYDIDEVADAIHRALTM 427 (460)
T ss_pred CCCCEEEEECCCCC-----HHHH-CCCEEECCCCHHHHHHHHHHHHCC
T ss_conf 99955999655243-----6672-878797999989999999999759
No 343
>PRK13123 consensus
Probab=34.78 E-value=40 Score=15.76 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC
Q ss_conf 9999999858998599994379------7899999997699869976
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K 103 (122)
.+++.+++...++|+++||-++ -.....++.+.|++++|.-
T Consensus 78 ~~~~~~~~~~~~~PivlMtY~N~i~~yG~e~F~~~~~~~GvdGvIip 124 (256)
T PRK13123 78 AILQALIEKETQIPLVIMTYINPVFQYGIERFVEDLAETGVKGLIIP 124 (256)
T ss_pred HHHHHHHHCCCCCCEEEEEHHHHHHHCCHHHHHHHHHHCCCCEEECC
T ss_conf 99988763057998897404258987189999999997499789737
No 344
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=34.68 E-value=40 Score=15.75 Aligned_cols=87 Identities=21% Similarity=0.178 Sum_probs=56.9
Q ss_pred CEEEEE--CCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCC--HHHHHHHHHHHCCCCCE
Q ss_conf 669997--5998999999999998898999999979999999718-998999983655999--79999999985899859
Q gi|254780312|r 3 QKILLA--EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMD--GIELARRATELDPDLKV 77 (122)
Q Consensus 3 ~rILiV--DD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~d--G~el~~~ir~~~~~~pi 77 (122)
+||.+. -.+....+.+...|...|+.+....+..........- +-|+++ =+..++.+ -.++++..|+ ...++
T Consensus 14 ~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i-~iS~sg~~~~~~~~~~~ak~--~g~~i 90 (139)
T cd05013 14 RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVI-AISFSGETKETVEAAEIAKE--RGAKV 90 (139)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHCCCCCCEEE-EECCCCCCHHHHHHHHHHHH--CCCEE
T ss_conf 9289998081599999999997258982798796277888874599999999-97686363789999999998--69979
Q ss_pred EEEECCCCHHHHHHH
Q ss_conf 999437978999999
Q gi|254780312|r 78 MFITGFAAVALNPDS 92 (122)
Q Consensus 78 i~~s~~~~~~~~~~~ 92 (122)
|.+|+....+....+
T Consensus 91 i~IT~~~~s~l~~~a 105 (139)
T cd05013 91 IAITDSANSPLAKLA 105 (139)
T ss_pred EEEECCCCCHHHHHC
T ss_conf 999799999779969
No 345
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=34.67 E-value=40 Score=15.75 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=53.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECC-HHHHHH----HHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCC
Q ss_conf 9866999759989999999999988989999999-799999----99718998999983655999799-99999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNN-GASAYD----KVREEPFSLLLTDIVMPEMDGIE-LARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~-g~~al~----~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~ 74 (122)
|+|.+||---...+-..+.+.|-+.|+.|..... .+++.+ .......++...-..+-+.+..+ +.+.+.+....
T Consensus 1 M~KvalITGas~GIG~a~a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~v~~~~~~~g~ 80 (245)
T PRK12824 1 MKKIALVTGAKRGIGSAIARELLADGYRVIATYFGNYDAAKDWFEEYGFTEDQVRLKSLDVTDTEECQEALARIEEEEGP 80 (245)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 98599994788889999999999879989999588077899999987404993899991389999999999999997499
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
+-+++-
T Consensus 81 iDiLVn 86 (245)
T PRK12824 81 VDILVN 86 (245)
T ss_pred CCEEEE
T ss_conf 989998
No 346
>KOG0781 consensus
Probab=34.46 E-value=23 Score=17.21 Aligned_cols=53 Identities=23% Similarity=0.342 Sum_probs=36.9
Q ss_pred CEEEEECCCHH-------HHHHHHHH---------HHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEE
Q ss_conf 66999759989-------99999999---------9988989999999799999997189989999836
Q gi|254780312|r 3 QKILLAEDDDD-------MRRFLIKA---------LGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55 (122)
Q Consensus 3 ~rILiVDD~~~-------~r~~l~~~---------L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~ 55 (122)
.||||+-=|+. .|.-+..+ |-+.||.=+.|.=+.+|++..+.+.||+|++|-.
T Consensus 407 frVlIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a~vak~AI~~a~~~gfDvvLiDTA 475 (587)
T KOG0781 407 FRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAAGVAKEAIQEARNQGFDVVLIDTA 475 (587)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 369998624312447899999999998745520488861047782899999999998669878998354
No 347
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=34.06 E-value=41 Score=15.69 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+.+.+...+++.||.+..+.+. .+.++.+.+..+|-+|+-- +..+. ...+.+++ .++|++++
T Consensus 17 l~~gi~~~~~~~gy~~ll~~~~~~~~~e~~~i~~l~~~~vdgiIi~~--~~~~~-~~~~~l~~--~~iPvV~i 84 (270)
T cd06296 17 VLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVT--PELTS-AQRAALRR--TGIPFVVV 84 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC--CCCCH-HHHHHHHH--CCCCEEEE
T ss_conf 99999999998499899997999969999999999954999999906--88999-99999997--49999998
No 348
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=33.94 E-value=41 Score=15.67 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=25.5
Q ss_pred CCEEEEECCCHHHHHHHHHHH----HHC----CCEEEEECCH---HHHHHHHHHCCCCEEEEEE
Q ss_conf 866999759989999999999----988----9899999997---9999999718998999983
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKAL----GKA----GYEVVSCNNG---ASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L----~~~----G~~v~~a~~g---~~al~~~~~~~~dlii~D~ 54 (122)
.++|+++|-|+.- .+..-- +.. ...+..+.+. .+.++......||.||+|.
T Consensus 30 g~~V~liD~Dpq~--s~~~W~~~a~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~yD~VIIDt 91 (231)
T pfam07015 30 GKRVALFEADENR--PLTKWRENALRKGTWDPACEIFNADELPLLEQAYEHAEGSGFDYALADT 91 (231)
T ss_pred CCEEEEEECCCCC--CHHHHHHHHHHCCCCCCCCCEECCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9959999689986--8899999876468888765222056601589999988657999899839
No 349
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway . TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group .; GO: 0004789 thiamin-phosphate diphosphorylase activity, 0009228 thiamin biosynthetic process.
Probab=33.79 E-value=42 Score=15.66 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=35.4
Q ss_pred EECCHHHHHHHHH---HCCCCEEEEEEECCC--------CCHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 9999799999997---189989999836559--------997999999998589-9859999437978999999976998
Q gi|254780312|r 31 SCNNGASAYDKVR---EEPFSLLLTDIVMPE--------MDGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 31 ~a~~g~~al~~~~---~~~~dlii~D~~mP~--------~dG~el~~~ir~~~~-~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
++.+-+|.-++.. ...+|-|=+---.|. .=|.|+++++++..+ ++|++.+=|.+..... .....|++
T Consensus 111 S~~~~~e~~~a~~C~~~~gaDY~G~Gp~fpT~TK~~~~~~~g~e~l~~~~~~~~h~~P~VAIGGI~~~n~~-~v~~~G~~ 189 (210)
T TIGR00693 111 STHNLEELAEAAACELKEGADYIGVGPIFPTPTKKDAAPPVGLELLREIAATSIHDIPIVAIGGITLENVA-EVLAAGAD 189 (210)
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCHHHHH-HHHHCCCC
T ss_conf 33798999999987640789888863711588788987764888999999861788765887598878999-99972887
Q ss_pred E
Q ss_conf 6
Q gi|254780312|r 99 K 99 (122)
Q Consensus 99 ~ 99 (122)
.
T Consensus 190 ~ 190 (210)
T TIGR00693 190 G 190 (210)
T ss_pred E
T ss_conf 3
No 350
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=33.74 E-value=42 Score=15.65 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=41.7
Q ss_pred EEECCCHHHHHHHHHHHHHCCCEEEEECC--HHHHH-----------------HH-HHHCCCCEEEEEEECCCCCHH
Q ss_conf 99759989999999999988989999999--79999-----------------99-971899899998365599979
Q gi|254780312|r 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNN--GASAY-----------------DK-VREEPFSLLLTDIVMPEMDGI 62 (122)
Q Consensus 6 LiVDD~~~~r~~l~~~L~~~G~~v~~a~~--g~~al-----------------~~-~~~~~~dlii~D~~mP~~dG~ 62 (122)
.+|+-+-...+-+...|+..|.+|..-++ |+.++ .. .+...|++|++|+-+-.+.|-
T Consensus 306 ~~~~G~~G~~~PL~~RL~~~Gi~V~~~sgmhGk~Gv~~igda~laltdGrtA~~rA~e~~~pNLVLldl~lDyst~~ 382 (508)
T TIGR02279 306 VVVVGDLGVLAPLLERLRAAGIKVEKKSGMHGKRGVIQIGDALLALTDGRTASARAIEEARPNLVLLDLVLDYSTAK 382 (508)
T ss_pred EEEEECHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEECCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEECCCCC
T ss_conf 79962601345899999748937987137755656267433767622777799999973589839885553203544
No 351
>pfam08415 NRPS Nonribosomal peptide synthase. This domain is found in bacterial nonribosomal peptide synthetases (NRPS). NRPS are megaenzymes organized as iterative modules, one for each amino acid to be built into the peptide product. NRPS modules are involved in epothilone biosynthesis (EpoB), myxothiazol biosynthesis (MtaC and MtaD), and other functions. The NRPS domain tends to be found together with the condensation domain (pfam00668) and the phosphopantetheine binding domain (pfam00550).
Probab=33.70 E-value=42 Score=15.65 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHC----CCCCEEEEECCCCHH
Q ss_conf 999799999999858----998599994379789
Q gi|254780312|r 58 EMDGIELARRATELD----PDLKVMFITGFAAVA 87 (122)
Q Consensus 58 ~~dG~el~~~ir~~~----~~~pii~~s~~~~~~ 87 (122)
..+|.++++++.+.. .-.||++.|+.+...
T Consensus 3 ~~sGV~vlRel~r~~~~~~~~~PVVFTS~L~~~~ 36 (57)
T pfam08415 3 SVSGVEVLRELARRRGGAAALMPVVFTSALGLGG 36 (57)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEECCCCCCC
T ss_conf 5469999999999729988756788873468876
No 352
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=33.66 E-value=42 Score=15.65 Aligned_cols=75 Identities=5% Similarity=0.028 Sum_probs=49.4
Q ss_pred CEEEEECCHHHHHHHH---HHCCCCEEEEEEECCCCCH---HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 8999999979999999---7189989999836559997---999999998589985999943797899999997699869
Q gi|254780312|r 27 YEVVSCNNGASAYDKV---REEPFSLLLTDIVMPEMDG---IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 27 ~~v~~a~~g~~al~~~---~~~~~dlii~D~~mP~~dG---~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
|+.....|.....+++ +...+..+++++.-|.... ++-+++||+.. ..|+|+ -|.-..+.+..+.+.|++.+
T Consensus 120 fQLY~~~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~~i~~l~~~~-~~p~i~-KGi~~~~DA~~a~~~G~dgI 197 (299)
T cd02809 120 FQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQW-KGPLIL-KGILTPEDALRAVDAGADGI 197 (299)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC-CCCEEE-ECCCCHHHHHHHHHCCCCEE
T ss_conf 7764369999999999999985999899970589878879999999999866-998799-72788999999998599889
Q ss_pred EEC
Q ss_conf 976
Q gi|254780312|r 101 LSK 103 (122)
Q Consensus 101 l~K 103 (122)
+.-
T Consensus 198 ~VS 200 (299)
T cd02809 198 VVS 200 (299)
T ss_pred EEC
T ss_conf 972
No 353
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=33.64 E-value=42 Score=15.64 Aligned_cols=90 Identities=16% Similarity=0.009 Sum_probs=61.8
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---999999999998898999999-------97999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|++ ..+..+...+++.|++|.... |-...+..+++..||+|++-. ...++..++++.++.
T Consensus 141 kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~--~~~~~~~~~kqa~~~ 218 (351)
T cd06334 141 KKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWG--WGVMNPVAIKEAKRV 218 (351)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf 789999568627689999999999976997988880699983589999999976989999937--737899999999975
Q ss_pred CCCCCEEEEECCCCHHHHHHHHH
Q ss_conf 89985999943797899999997
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNA 94 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~ 94 (122)
.-+.|++..++..+......+-.
T Consensus 219 G~~~~~ig~~~~~~~~~~~~aG~ 241 (351)
T cd06334 219 GLDDKFIGNWWSGDEEDVKPAGD 241 (351)
T ss_pred CCCCCEEEEECCCCHHHHHHHHH
T ss_conf 99985797516788999997211
No 354
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=33.56 E-value=42 Score=15.64 Aligned_cols=110 Identities=16% Similarity=0.299 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHH-CCC------EEEEECCHHHHH--HHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC----CCC-
Q ss_conf 998999999999998-898------999999979999--999718998999983655999799999999858----998-
Q gi|254780312|r 10 DDDDMRRFLIKALGK-AGY------EVVSCNNGASAY--DKVREEPFSLLLTDIVMPEMDGIELARRATELD----PDL- 75 (122)
Q Consensus 10 D~~~~r~~l~~~L~~-~G~------~v~~a~~g~~al--~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~----~~~- 75 (122)
|.+..|.++. .|.+ -|| +|..|.|-.+.| ++++.+.+|=.| .+-+|+..|-.-+-+|.... .++
T Consensus 268 DrEVQRTmle-LL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkI-EfplPd~~gR~~Il~IHtrkM~l~~dvd 345 (406)
T COG1222 268 DREVQRTMLE-LLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKI-EFPLPDEEGRAEILKIHTRKMNLADDVD 345 (406)
T ss_pred HHHHHHHHHH-HHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEE-ECCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 0999999999-9986058897887689985588555576650887545301-1689897899999998762146766769
Q ss_pred ---CEEEEECCCCHHHHHHHHHCCCCEE--EECCCCHHHHHHHHHHHHHCC
Q ss_conf ---5999943797899999997699869--976979899999999996036
Q gi|254780312|r 76 ---KVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 76 ---pii~~s~~~~~~~~~~~~~~g~~~~--l~KP~~~~~L~~~i~~~l~~~ 121 (122)
-+-...+.+..+...-|-+.|.... =.+-+..+++.+++.+++..+
T Consensus 346 ~e~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 346 LELLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHCC
T ss_conf 999987538995677999999875999986047333999999999997214
No 355
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.36 E-value=42 Score=15.62 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=32.5
Q ss_pred EEEECCCHHHHHHHH---HHHHHCCCEEEEE-----CCHHHHHHHHHH----CCCCEEEEEEECC-CCCHHHHHHHH
Q ss_conf 999759989999999---9999889899999-----997999999971----8998999983655-99979999999
Q gi|254780312|r 5 ILLAEDDDDMRRFLI---KALGKAGYEVVSC-----NNGASAYDKVRE----EPFSLLLTDIVMP-EMDGIELARRA 68 (122)
Q Consensus 5 ILiVDD~~~~r~~l~---~~L~~~G~~v~~a-----~~g~~al~~~~~----~~~dlii~D~~mP-~~dG~el~~~i 68 (122)
+++|-||+.....+. +..++.|+..... .+-++-++.+.+ ...|-|++-+-+| ..|-.+++..|
T Consensus 38 vilvg~d~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~LN~d~~V~GIiVQlPLP~~id~~~i~~~I 114 (288)
T PRK10792 38 VVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLPAGIDNVKVLERI 114 (288)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHC
T ss_conf 99958984479999999999997599799986688999999999999996799878637836899885779998514
No 356
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=33.33 E-value=42 Score=15.61 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=37.3
Q ss_pred HHHHHHHHH------CCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999971------89989999836559997999999998589985999943797899999997699869976979899
Q gi|254780312|r 36 ASAYDKVRE------EPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109 (122)
Q Consensus 36 ~~al~~~~~------~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~ 109 (122)
++-++.+.+ ..+|+|++|+. |+++|..-+...|..+ +. ...-+++.+.++.+.+ |+.|=|.-++
T Consensus 86 ee~l~ki~~~~g~dekk~DVV~SDaa-P~~SG~~~iDh~Rs~d------Lv--~~aL~ia~~vL~~~Gn-fvvKvFqGe~ 155 (192)
T TIGR00438 86 EEVLNKILERVGDDEKKVDVVMSDAA-PNISGIWDIDHLRSID------LV--ELALDIAKEVLKPKGN-FVVKVFQGEE 155 (192)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEECCC-CCCCCCCCCCHHHHHH------HH--HHHHHHHHHHHHCCCC-EEEEEEECCC
T ss_conf 78999999857898743778985268-8878987543443799------99--9999999998615898-9999853742
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780312|r 110 LVNEVN 115 (122)
Q Consensus 110 L~~~i~ 115 (122)
|-+-++
T Consensus 156 ~d~y~~ 161 (192)
T TIGR00438 156 IDEYLN 161 (192)
T ss_pred HHHHHH
T ss_conf 889999
No 357
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=33.21 E-value=43 Score=15.60 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred CEEE-EECCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699-975998---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKIL-LAEDDD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rIL-iVDD~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+|+. |..|.. .....++..++..|.+|... .|=..-+..++...||+|++- +.+-++..++++.++.
T Consensus 134 kkv~~i~~dy~~g~~~~~~~~~~~~~~G~eVv~e~~~p~g~~Dfs~~l~kI~~a~pD~V~~~--~~g~~~~~f~rq~~~~ 211 (374)
T TIGR03669 134 KKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNIQKADPDFVMSM--LVGANHASFYEQAASA 211 (374)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHHC
T ss_conf 94899963664147899999999986698899999668999668999999986799999990--5587479999999974
Q ss_pred CCCCCEEEEECCC
Q ss_conf 8998599994379
Q gi|254780312|r 72 DPDLKVMFITGFA 84 (122)
Q Consensus 72 ~~~~pii~~s~~~ 84 (122)
.-++|+...++..
T Consensus 212 Gl~~p~~~~~~~~ 224 (374)
T TIGR03669 212 NLNLPMGTSTAMA 224 (374)
T ss_pred CCCCCCCCEEEEC
T ss_conf 9998632202321
No 358
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=33.11 E-value=43 Score=15.59 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=40.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEE-------------------CCHHHHHHHHHHCC-CCEEEEEEECCCCCHH
Q ss_conf 9997599899999999999889899999-------------------99799999997189-9899998365599979
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSC-------------------NNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a-------------------~~g~~al~~~~~~~-~dlii~D~~mP~~dG~ 62 (122)
++..|+.+..+.++... +..|..+..+ .+-++.++.+.+.. -.++=+|+.||+.+|.
T Consensus 53 ~~~~d~~~~~~~i~~~~-e~~Gi~I~~~dg~~~~~~~~vvLIGhiv~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~ 129 (170)
T COG2061 53 VFEGDREDKDAKIIRLL-EEEGIIIIRFDGARLREKTDVVLIGHIVHTDIQDTIDRINSIGGAEVVDLSLSMPGIEGE 129 (170)
T ss_pred EEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCCEEEEEEEEEEEECCCHHHHHHHHHCCCCEEEEEEEEECCCCCCC
T ss_conf 99835627889999999-867948999658676316869999745517678778876334877999988654799877
No 359
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=32.83 E-value=43 Score=15.56 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=26.9
Q ss_pred CCEEEEECCCHHHHHHHHHHH----HHCC----CEEEEECC---HHHHHHHHHHCCCCEEEEEE
Q ss_conf 866999759989999999999----9889----89999999---79999999718998999983
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKAL----GKAG----YEVVSCNN---GASAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L----~~~G----~~v~~a~~---g~~al~~~~~~~~dlii~D~ 54 (122)
.++|+++|-|+.- .+..-. +... ..+..+.+ -.++++......||+||.|.
T Consensus 30 g~~v~~iD~Dpq~--s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~~~~~~~D~VIIDt 91 (231)
T PRK13849 30 GKRVALFEADENR--PLTRWKENALRSNTWDPACEVYAADELPLLEAAYEDAELQGFDYALADT 91 (231)
T ss_pred CCEEEEEECCCCC--CHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9959999689986--8899998765258988775234056525789999887536998899818
No 360
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=32.79 E-value=43 Score=15.56 Aligned_cols=77 Identities=21% Similarity=0.239 Sum_probs=52.0
Q ss_pred CEEEEECC-----CHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 66999759-----989999999999988989999-999799999997189989999836559997999999998589985
Q gi|254780312|r 3 QKILLAED-----DDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 3 ~rILiVDD-----~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
|||||+=. +.....-+.+.|++.|+.+.. ..+-.+.-.. ...||+++.=...|. .-++|
T Consensus 1 KkIlVaCGsGiaTSt~v~~ki~~~l~e~gi~~~i~~~~i~e~~~~--~~~~Dliv~tt~~~~-------------~~~iP 65 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSL--LDDADLIVSTTKVPE-------------DYGIP 65 (89)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHC--CCCCCEEEEECCCCC-------------CCCCC
T ss_conf 949999899703999999999999998699159999759998742--799878999442688-------------88987
Q ss_pred EE----EEECCCCHHHHHHHHH
Q ss_conf 99----9943797899999997
Q gi|254780312|r 77 VM----FITGFAAVALNPDSNA 94 (122)
Q Consensus 77 ii----~~s~~~~~~~~~~~~~ 94 (122)
+| ++||.+.++...+-.+
T Consensus 66 vi~g~p~LTGig~d~~~~~i~~ 87 (89)
T cd05566 66 VINGLPFLTGIGEDKVYEEILE 87 (89)
T ss_pred EEEEEEEEECCCHHHHHHHHHH
T ss_conf 8996331113887899999997
No 361
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.64 E-value=43 Score=15.54 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf 99999999999889899999997------99999997189989999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLT 52 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~ 52 (122)
.+.+.+...+++.||.+....+. .++++.+.++.+|-+|+
T Consensus 16 ~i~~gie~~~~~~gy~~ll~~s~~~~~~e~~~i~~l~~~~vdGiIi 61 (265)
T cd06290 16 RILKGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALIL 61 (265)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999999986998999979999799999999999659998999
No 362
>pfam06506 PrpR_N Propionate catabolism activator. This domain is found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate.
Probab=32.62 E-value=43 Score=15.54 Aligned_cols=109 Identities=15% Similarity=0.134 Sum_probs=62.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99975998999999999998898999999979999999718998999983655999799999999858998599994379
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~ 84 (122)
|=+++-+-...--+.+.+...|++|..+..|... +++++ .++=++++.+ +|+++++.+++.....+-+.+.++.
T Consensus 11 i~v~~~~l~~av~~a~~~~~~g~dvIIsRGgta~--~ir~~-~~iPVv~I~~---s~~Dil~al~~a~~~~~kiavvg~~ 84 (169)
T pfam06506 11 VEVVDGGLEDAVEVARALVAEGVDVIISRGGTAA--YLRDR-LSVPVVEIKV---SGFDLLRALARARRYGGRIGLVGYE 84 (169)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEECCHHHH--HHHHH-CCCCEEEEEC---CHHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 7999777899999999999779959998965899--99985-8998899827---8869999999999758979999276
Q ss_pred CHH-HHHHH-HHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 789-99999-976998699769798999999999960
Q gi|254780312|r 85 AVA-LNPDS-NAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 85 ~~~-~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
+.- ..... .-.+..-......+.+++...++++-+
T Consensus 85 ~~~~~~~~~~~il~~~i~~~~~~~~~e~~~~i~~l~~ 121 (169)
T pfam06506 85 NIIPGLKALSELLGLDIVQRAYQSEEEARAAVKELKA 121 (169)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH
T ss_conf 3036899999996993599996688999999999998
No 363
>KOG1601 consensus
Probab=32.61 E-value=6.1 Score=20.64 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=57.3
Q ss_pred EEECCCHHHHHHHHHHHHHCCCE----EEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH--CCCCCEEE
Q ss_conf 99759989999999999988989----9999997999999971899899998365599979999999985--89985999
Q gi|254780312|r 6 LLAEDDDDMRRFLIKALGKAGYE----VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL--DPDLKVMF 79 (122)
Q Consensus 6 LiVDD~~~~r~~l~~~L~~~G~~----v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~--~~~~pii~ 79 (122)
+.+||+...+..+...+...-+. .....+............+|+++.+..||+++|+.++..+... ..+.|+++
T Consensus 19 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (340)
T KOG1601 19 LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAATSFSIDLSVPSLDMPGLEGFSLFVSENNPNSLRHPPVPS 98 (340)
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC
T ss_conf 45664446600011454346665555553457655443322355567667653335553213455214664546788654
Q ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 94379789999999769986997697989
Q gi|254780312|r 80 ITGFAAVALNPDSNAPKNAKVLSKPFHLR 108 (122)
Q Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~ 108 (122)
++..............++..|+.||....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 127 (340)
T KOG1601 99 MPSSNSSSSSSSSVSPSASLELTKPDRKN 127 (340)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 55445455444554664112455555534
No 364
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=32.50 E-value=44 Score=15.53 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH
Q ss_conf 89999999999988989999999799999997189989999836559997999999998589985999943797899999
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPD 91 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~ 91 (122)
..-...++..|...|+.+......-.-+. ..-|+|++ --+|.++.|+..|+.+++.+..+-+.....+
T Consensus 15 aMgas~lrk~lk~~gl~i~V~n~aI~~lp----~dadlVVt--------~~~L~~rAk~~~p~a~~i~v~nfL~~~~yd~ 82 (87)
T cd05567 15 AMGASVLRKKLKKAGLEIPVTNSAIDELP----SDADLVVT--------HASLTDRAKKKAPQAQHLSVDNFLNTPEYDE 82 (87)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEHHHCC----CCCCEEEE--------HHHHHHHHHHHCCCCEEEEHHHHCCCHHHHH
T ss_conf 99999999999984998369980165499----86438886--------6999999997689988996587258877999
No 365
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=32.47 E-value=44 Score=15.53 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=48.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 66999759989999999999988989-99-9999799999997189989999836559997999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
.+|.-||-++......+..|...||. |. ...||..+|. ...+||.|++...-|..-- .++++++.
T Consensus 95 ~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~--~~aPyD~I~Vtaaa~~vP~-~Ll~QL~~ 161 (209)
T COG2518 95 GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP--EEAPYDRIIVTAAAPEVPE-ALLDQLKP 161 (209)
T ss_pred CEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC--CCCCCCEEEEEECCCCCCH-HHHHHCCC
T ss_conf 8499999719999999999997698734999788556887--7798478999503577998-99985065
No 366
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=32.33 E-value=44 Score=15.51 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=40.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHH----HHH-HHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 866999759989999999999988989999999799----999-997189989999836559997999999998589985
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS----AYD-KVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~----al~-~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
.||+-|.-|-....-..+-.+++.|.+|..+.+... .+. .+.......++.| |.+++-+.+++..|
T Consensus 301 GKrvaI~gd~~~~~~l~~fl~~ELGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~------D~~el~~~i~~~~p--- 371 (430)
T cd01981 301 GKRAFVFGDATHVAAATRILAREMGFRVVGAGTYCKEDAKWFREQATGYCDEALITD------DHTEVGDMIARTEP--- 371 (430)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEEC------CHHHHHHHHHHCCC---
T ss_conf 977999878158999999999856976997067766468999998743698089958------99999999862499---
Q ss_pred EEEEECCCCHHHH
Q ss_conf 9999437978999
Q gi|254780312|r 77 VMFITGFAAVALN 89 (122)
Q Consensus 77 ii~~s~~~~~~~~ 89 (122)
=+++.+.-.....
T Consensus 372 DlliG~s~ek~ia 384 (430)
T cd01981 372 ELIFGTQMERHIG 384 (430)
T ss_pred CEEEECCCHHHHH
T ss_conf 9999664189999
No 367
>TIGR01090 apt adenine phosphoribosyltransferase; InterPro: IPR005764 Adenine phosphoribosyltransferase (APRTase, 2.4.2.7 from EC) is a widely distributed enzyme, and its deficiency in humans causes the accumulation of 2,8-dihydroxyadenine. It is the sole catalyst for adenine recycling in most eukaryotes. AMP + diphosphate = adenine + 5-phospho-alpha-D-ribose 1-diphosphate ; GO: 0003999 adenine phosphoribosyltransferase activity, 0006168 adenine salvage.
Probab=32.29 E-value=44 Score=15.51 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=19.6
Q ss_pred CCEEEEECCCHHH---HHHHHHHHHHCCCEEEEECC
Q ss_conf 8669997599899---99999999988989999999
Q gi|254780312|r 2 NQKILLAEDDDDM---RRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 2 ~~rILiVDD~~~~---r~~l~~~L~~~G~~v~~a~~ 34 (122)
.+|||||||=-+. .....+.+++.|-+|..++-
T Consensus 114 g~RVliVDDLlATGGT~~A~~eLi~~Lggev~~~aF 149 (175)
T TIGR01090 114 GQRVLIVDDLLATGGTAEATLELIKKLGGEVVEAAF 149 (175)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 890899832201267899999999985961687455
No 368
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.26 E-value=44 Score=15.51 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=32.5
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf 69997599899999999999889899999997999999971899899998365
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m 56 (122)
+|||..-.=.+...+...|...|++|..+....++..... ...++...|+..
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~ 53 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRD 53 (275)
T ss_pred CEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHCC-CCCEEECCCCCC
T ss_conf 3899867775799999999975986999736822111103-785288456416
No 369
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=31.33 E-value=46 Score=15.41 Aligned_cols=66 Identities=9% Similarity=0.066 Sum_probs=44.7
Q ss_pred HHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9999999718998999983655-999799999999858998599994379789999999769986997
Q gi|254780312|r 36 ASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 36 ~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
.+-.+.+-+...|++++|.-=. ...=++++++||+..|++|||. -.....+.....++.|++.+..
T Consensus 240 ~eRa~~Lv~aGvDvlvIDtAhGhs~~v~~~ik~ik~~~p~v~vIa-GNVaT~~~a~~Li~aGAD~vkV 306 (499)
T PTZ00314 240 KERAAALIDAGVDVLVLDSSQGNSIYQIDFIKWIKSTYPHLEVIA-GNVVTQDQAKNLIDAGADGIRI 306 (499)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEE-EEECHHHHHHHHHHCCCCEEEE
T ss_conf 999999998699899981688772789999999885279884676-4331099999999749987997
No 370
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=31.30 E-value=46 Score=15.41 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 99718998999983655-----999799999999858998599994379789999
Q gi|254780312|r 41 KVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKVMFITGFAAVALNP 90 (122)
Q Consensus 41 ~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~ 90 (122)
.+.+..||++++|--+. -++--++++.+++ .|.---+++||....+...
T Consensus 90 ~l~~~~~dlvVLDEi~~a~~~gli~~~~v~~~l~~-rp~~~evVlTGr~~p~~L~ 143 (159)
T cd00561 90 AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA-KPEDLELVLTGRNAPKELI 143 (159)
T ss_pred HHHCCCCCEEEEHHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCHHHH
T ss_conf 98688989997366899998599179999999984-8999789996999999999
No 371
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.10 E-value=46 Score=15.39 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCC--HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 99999999999889899999997------9999999718998999983655999--799999999858998599994379
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMD--GIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~d--G~el~~~ir~~~~~~pii~~s~~~ 84 (122)
.+.+.+...++..||.+..+.+. .+.++.+.+..+|-+|+=-..+... -.+.++.+++ ..+|++++....
T Consensus 16 ~l~~gie~~~~~~Gy~~li~~s~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~~~--~~iPvV~~d~~~ 93 (273)
T cd06292 16 AFAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAE--RGLPVVLVNGRA 93 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH--CCCCEEEEECCC
T ss_conf 999999999998699899997899979999999999964998499924766633157899999996--699889993357
Q ss_pred ----------------CHHHHHHHHHCCCC--EEEECCCCH
Q ss_conf ----------------78999999976998--699769798
Q gi|254780312|r 85 ----------------AVALNPDSNAPKNA--KVLSKPFHL 107 (122)
Q Consensus 85 ----------------~~~~~~~~~~~g~~--~~l~KP~~~ 107 (122)
.........+.|.. .|+..|...
T Consensus 94 ~~~~~~~~V~~Dn~~a~~~a~~~L~~~G~~~i~~i~~~~~~ 134 (273)
T cd06292 94 PPPLKVPHVSTDDALAMRLAVRHLVALGHRRIGFASGPGRT 134 (273)
T ss_pred CCCCCCCEEEECHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 99888748996889999999999998599808995178777
No 372
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase; InterPro: IPR004393 Nicotinate-nucleotide pyrophosphorylase (2.4.2.19 from EC), also known as quinolinate phosphoribosyltransferase (decarboxylating), catalyses the conversion of nicotinate D-ribonucleotide, pyrophosphate and carbon dioxide into pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate. This enzyme is a type II phosphoribosyltransferase which provides the de novo source of nicotinate mononucleotide (NAMN) for NAD biosynthesis in both prokaryotes and eukaryotes , . Structural studies have shown that the active form of this enzyme is a homodimer with an unsual fold , , . The N-terminal forms a mixed alpha/beta domain, while the C-terminal region forms a multi-stranded, open alpha/beta barrel. The active site is found at the C-terminal ends of the beta strands of the alpha/beta barrel, and is bordered by the N-terminal domain of the second subunit of the dimer. It contains several conserved charged residues thought to be important determinants of substrate binding and catalysis. ; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0019363 pyridine nucleotide biosynthetic process.
Probab=31.04 E-value=46 Score=15.38 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHCCCE--EE-EECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE--EEECCCCHHH
Q ss_conf 999999999988989--99-999979999999718998999983655999799999999858998599--9943797899
Q gi|254780312|r 14 MRRFLIKALGKAGYE--VV-SCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVM--FITGFAAVAL 88 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~--v~-~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii--~~s~~~~~~~ 88 (122)
+.+.+++.=+..+|. |+ +++|-+|+-+.+..+ .|+|++|= |+..++.+.++.....-|-+ =.||--..+.
T Consensus 172 ~~~Av~~aR~~~~~~~kiEVEVenlE~a~eA~~AG-ADiImLDN----m~p~~~~~av~~~~~~~p~~~~EaSGGitl~n 246 (276)
T TIGR00078 172 IEKAVKRARAALPFAKKIEVEVENLEEAEEAAEAG-ADIIMLDN----MKPEEIKEAVELLKGRNPNVLVEASGGITLDN 246 (276)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCC-CCEEECCC----CCHHHHHHHHHHHHHCCCEEEEEEECCCCHHH
T ss_conf 89999999984899807998628989999999709-95998069----89479999999997029908999836998789
Q ss_pred HHHHHHCCCCEEEE
Q ss_conf 99999769986997
Q gi|254780312|r 89 NPDSNAPKNAKVLS 102 (122)
Q Consensus 89 ~~~~~~~g~~~~l~ 102 (122)
....-..|++ ||+
T Consensus 247 ~~~ya~~gVD-~IS 259 (276)
T TIGR00078 247 IEEYAETGVD-VIS 259 (276)
T ss_pred HHHHHHCCCC-EEE
T ss_conf 9998408975-883
No 373
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=30.95 E-value=46 Score=15.37 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 999999985899859999437978999999976998699769798999999999
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~ 116 (122)
|=..++|+. .++.+++||-.......-+.+.|+++|+.- ..|++=++.|++
T Consensus 454 ERf~elR~M--gIkTvM~TGDN~~TAa~IA~EAGVDdfiAe-atPEdK~~~I~~ 504 (681)
T COG2216 454 ERFAELRKM--GIKTVMITGDNPLTAAAIAAEAGVDDFIAE-ATPEDKLALIRQ 504 (681)
T ss_pred HHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHCCHHHHHC-CCHHHHHHHHHH
T ss_conf 999999965--975999808977779999987180146552-895889999998
No 374
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=30.78 E-value=47 Score=15.36 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=15.8
Q ss_pred HHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf 99999999889899999997------99999997189989999
Q gi|254780312|r 16 RFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLT 52 (122)
Q Consensus 16 ~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~ 52 (122)
..+...+++.||.+..+.+. .+.++.+.++..|-+|+
T Consensus 19 ~~ie~~~~~~Gy~~ll~~s~~d~~~e~~~i~~l~~~~vdGiIi 61 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIV 61 (264)
T ss_pred HHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999999986998999938999899999999999669987997
No 375
>PRK11036 putative metallothionein SmtA; Provisional
Probab=30.76 E-value=47 Score=15.35 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=69.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCE--EEEECCHHHHHHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEE
Q ss_conf 866999759989999999999988989--99999979999999718998999983655-999799999999858998599
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYE--VVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~--v~~a~~g~~al~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii 78 (122)
.++|.++|-++.+....+...++.|.. +.......+.+.....++||+|++=-.|- --|-..+++.+.+.-..--++
T Consensus 66 Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~l 145 (256)
T PRK11036 66 GHQVTLCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGAL 145 (256)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEE
T ss_conf 99799866999999999999886496612798856899885423688667865136772378999999999975899379
Q ss_pred EEECCCCHHHHHHHHHCCCCE-----------E---EECCCCHHHHHHHHHHH
Q ss_conf 994379789999999769986-----------9---97697989999999999
Q gi|254780312|r 79 FITGFAAVALNPDSNAPKNAK-----------V---LSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 79 ~~s~~~~~~~~~~~~~~g~~~-----------~---l~KP~~~~~L~~~i~~~ 117 (122)
-+..|+.....-+..-.|..+ + =..|.+++++..-++..
T Consensus 146 SLmfyN~~alv~~n~l~Gnf~~a~~~~~~~~~~~LtP~~p~~p~~V~~~l~~~ 198 (256)
T PRK11036 146 SLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPQYPRDPAQVYQWLEEA 198 (256)
T ss_pred EEEECCHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 99842851699999982589999730634455216899999999999999977
No 376
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=30.73 E-value=47 Score=15.35 Aligned_cols=82 Identities=9% Similarity=-0.015 Sum_probs=55.6
Q ss_pred ECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEECCCCC--HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 7599899999999999889899999997999999971-8998999983655999--799999999858998599994379
Q gi|254780312|r 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD--GIELARRATELDPDLKVMFITGFA 84 (122)
Q Consensus 8 VDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~mP~~d--G~el~~~ir~~~~~~pii~~s~~~ 84 (122)
+-.+..+...+...|...|..+....+.......... .+-|++| -+..++.. -.++++..|+ ...|+|.+|+..
T Consensus 149 ~G~S~~vA~~~~~kl~rlG~~~~~~~d~~~~~~~a~~l~~~Dv~i-~iS~sG~t~e~i~~~~~Ak~--~Ga~vI~IT~~~ 225 (293)
T PRK11337 149 AGGSNAICADVQHKFLRIGVRCQAYPDAHIMMMSASLLQEGDVVL-VVSHSGRTSDVKAAVELAKQ--NGAKIICITHSY 225 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCCEEE-EEECCCCCHHHHHHHHHHHH--CCCEEEEECCCC
T ss_conf 572699999999999985980476477789999997189998899-98189998899999999998--799499976999
Q ss_pred CHHHHHHH
Q ss_conf 78999999
Q gi|254780312|r 85 AVALNPDS 92 (122)
Q Consensus 85 ~~~~~~~~ 92 (122)
..+...-+
T Consensus 226 ~SpLa~~a 233 (293)
T PRK11337 226 HSPIAKLA 233 (293)
T ss_pred CCHHHHHC
T ss_conf 98468958
No 377
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=30.70 E-value=47 Score=15.35 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=30.9
Q ss_pred CCCCCHHH--HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 55999799--999999858998599994379789999999769986997697989999999999
Q gi|254780312|r 56 MPEMDGIE--LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 56 mP~~dG~e--l~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
+|...|+. =+++|-...|++-+ ...+........+..+.|+.-|..+|-+.+++.+.++++
T Consensus 59 lp~VG~~~~~~~E~IlaL~PDLVi-a~~~~~~~~~~~~L~~~GI~v~~~~~~sl~di~~~i~~l 121 (265)
T PRK03379 59 IEQVSTWQGMNLERIVALKPDLVL-AWRGGNAERQVDQLASLGIKVMWVDATSIEQIADALRQL 121 (265)
T ss_pred CCCCCCCCCCCHHHHHHHCCCEEE-EECCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 870278889899999963999899-956889589999998169758835999999999999999
No 378
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=30.65 E-value=47 Score=15.34 Aligned_cols=97 Identities=30% Similarity=0.407 Sum_probs=50.4
Q ss_pred CEEEEECCCHHHHHHHHHHH----HHCCCEEEE-ECCH----------HHHHHHHHHCCCCEEEEEEECCCCCHH-----
Q ss_conf 66999759989999999999----988989999-9997----------999999971899899998365599979-----
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKAL----GKAGYEVVS-CNNG----------ASAYDKVREEPFSLLLTDIVMPEMDGI----- 62 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L----~~~G~~v~~-a~~g----------~~al~~~~~~~~dlii~D~~mP~~dG~----- 62 (122)
+|+|+|==| ..|=.....| ++.|..|-. ..++ .+|++.++++.+|+||+|-- |-
T Consensus 133 ~kvLLva~D-~yRPAA~~QL~~Lg~Q~gVpvf~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTA-----GRL~ID~ 206 (439)
T TIGR00959 133 KKVLLVACD-LYRPAAIEQLKVLGEQVGVPVFAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTA-----GRLQIDE 206 (439)
T ss_pred CCEEEEEHH-CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-----CCHHHHH
T ss_conf 970340321-0347899999997675288711004788898877899999999999748978997267-----5125559
Q ss_pred HH---HHHHHH-HCCCCCEE---EEECCCCHHHHHHHH-HCCCCEE-EECCCC
Q ss_conf 99---999998-58998599---994379789999999-7699869-976979
Q gi|254780312|r 63 EL---ARRATE-LDPDLKVM---FITGFAAVALNPDSN-APKNAKV-LSKPFH 106 (122)
Q Consensus 63 el---~~~ir~-~~~~~pii---~~s~~~~~~~~~~~~-~~g~~~~-l~KP~~ 106 (122)
+| +..||+ .+|+=-+. .|||-.....+.... +.|.+++ |+| ++
T Consensus 207 ~LM~EL~~iK~~~nP~EiLlVvDaM~GQdAvn~A~~F~e~lgltG~vltK-~D 258 (439)
T TIGR00959 207 ELMEELAEIKEILNPDEILLVVDAMTGQDAVNTAKTFNERLGLTGVVLTK-LD 258 (439)
T ss_pred HHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHHHHHHCCCCCCCEEEEEC-CC
T ss_conf 99999999988868870541220102169999998636600135478854-75
No 379
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.61 E-value=47 Score=15.34 Aligned_cols=81 Identities=7% Similarity=0.104 Sum_probs=46.9
Q ss_pred CCEEEEECCCHHH----HHHHHHHHHH----CCCEEEE-ECCH---HHHHHHHH----HCCCCEEEEEEECCCC-----C
Q ss_conf 8669997599899----9999999998----8989999-9997---99999997----1899899998365599-----9
Q gi|254780312|r 2 NQKILLAEDDDDM----RRFLIKALGK----AGYEVVS-CNNG---ASAYDKVR----EEPFSLLLTDIVMPEM-----D 60 (122)
Q Consensus 2 ~~rILiVDD~~~~----r~~l~~~L~~----~G~~v~~-a~~g---~~al~~~~----~~~~dlii~D~~mP~~-----d 60 (122)
.+||+.+-|+-+. ...+...|.. .++++.- .-+| .+.+..+. ...||+|++-+..-+. +
T Consensus 1 g~rIv~~GDSiT~g~g~~~~~~~~l~~~~~~~~~~viN~Gi~G~t~~~~~~r~~~~v~~~~Pd~Vii~~G~ND~~~~~~~ 80 (191)
T cd01834 1 GDRIVFIGNSITDRGGYVGYVETYLAARYPELKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMFGINDSFRGFDD 80 (191)
T ss_pred CCEEEEECCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHCCCCC
T ss_conf 99999988874309966468999999867999865998436688777799998988732799999998466144127776
Q ss_pred H--H--------HHHHHHHHHCCCCCEEEEEC
Q ss_conf 7--9--------99999998589985999943
Q gi|254780312|r 61 G--I--------ELARRATELDPDLKVMFITG 82 (122)
Q Consensus 61 G--~--------el~~~ir~~~~~~pii~~s~ 82 (122)
+ . .+++.+++..+.++++++|-
T Consensus 81 ~~~~~~~~~~l~~ii~~~~~~~~~~~iil~~p 112 (191)
T cd01834 81 PVGLEKFKTNLRRLIDRLKNKESAPRIVLVSP 112 (191)
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 56799999999999999997689988999827
No 380
>PRK07707 consensus
Probab=30.37 E-value=47 Score=15.31 Aligned_cols=44 Identities=23% Similarity=0.388 Sum_probs=36.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-ECCHHHHHHHHHH
Q ss_conf 9866999759989999999999988989999-9997999999971
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVRE 44 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~ 44 (122)
|+|.+||---...+-..+.+.|.+.|++|.. ..+-++..+.+.+
T Consensus 1 M~KvalVTG~s~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~ 45 (239)
T PRK07707 1 MKKYALVTGASGGIGQAISKQLAQDGYTVYLHYNNNEEKVNELQE 45 (239)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHH
T ss_conf 998999966887899999999998799899983999899999999
No 381
>TIGR00075 hypD hydrogenase expression/formation protein HypD; InterPro: IPR002780 HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes . This protein has been found in Gram-negative and Gram-positive bacteria and Archaea. HypD contains many possible metal binding residues, which may bind to nickel. Transposon Tn5 insertions into HypD resulted in Rhizobium leguminosarum mutants that lacked any hydrogenase activity in symbiosis with peas .; GO: 0046872 metal ion binding.
Probab=30.23 E-value=48 Score=15.30 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEECCCCCHHHHHH-----HHHHHC-CCC-CEEEEECCCCHHHHHHH
Q ss_conf 9998898999999979999999718-998999983655999799999-----999858-998-59999437978999999
Q gi|254780312|r 21 ALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIELAR-----RATELD-PDL-KVMFITGFAAVALNPDS 92 (122)
Q Consensus 21 ~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~mP~~dG~el~~-----~ir~~~-~~~-pii~~s~~~~~~~~~~~ 92 (122)
..+..|+.|..+-|..+|+++.+++ .=.+|++-+ |||.+. .|.+.. .++ -+-+++.|-...-+.++
T Consensus 118 ~~ra~G~DvRIVYS~~dal~iA~~~Pdr~VVf~ai------GFETTaP~TA~~L~~~k~~~v~NF~~l~~H~~~pPa~~a 191 (384)
T TIGR00075 118 QARAEGADVRIVYSPMDALKIAKENPDRKVVFFAI------GFETTAPTTAITLLSAKAEDVNNFYVLSAHRLVPPALEA 191 (384)
T ss_pred HHHHCCCCEEEEECHHHHHHHHHHCCCCCEEEEEE------CCCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHH
T ss_conf 99755886799808789999998687994799961------551261469999973555776503443211221148888
Q ss_pred H
Q ss_conf 9
Q gi|254780312|r 93 N 93 (122)
Q Consensus 93 ~ 93 (122)
+
T Consensus 192 L 192 (384)
T TIGR00075 192 L 192 (384)
T ss_pred H
T ss_conf 8
No 382
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=30.19 E-value=48 Score=15.30 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 99999998589985999943797899999997699869976979899999999996036
Q gi|254780312|r 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 63 el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
-+++++. -.+|+|..-..+. ..+..+.|.++||.+|-+.++|.+++.++++-+
T Consensus 275 vllEAma---~G~PvIatd~~~G---~~EiI~dg~nG~Lv~~~d~~~la~~i~~li~~e 327 (361)
T PRK09922 275 TLLEAMS---YGIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 327 (361)
T ss_pred HHHHHHH---HCCCEEEECCCCC---CHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCH
T ss_conf 8999999---5998999759999---088715898379977999999999999998482
No 383
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; InterPro: IPR010139 Imidazole glycerol phosphate synthetase (IGPS) is a key metabolic enzyme, which links amino acid and nucleotide biosynthesis: it catalyses the closure of the imidazole ring within histidine biosynthesis (fifth step), and provides the substrate for de novo purine biosynthesis. IGPS consists of two different subunits: HisH, a glutamine amidotransferase (glutaminase), and HisF, a synthase (cyclase). HisH functions to provide a source of nitrogen, which is required for the synthesis of histidine and purines. In the HisH glutaminase reaction, the hydrolysis of glutamine yields ammonia, which is then used by HisF in the subsequent synthase reaction. The X-ray structure of the HisH/HisF heterodimer of IGPS reveals a putative tunnel for the transfer of ammonia from HisH to HisF via a (beta-alpha)8 barrel fold within HisF that abuts HisH . Ammonia tunnels connect the glutaminase and synthase active sites. HisH belongs to a large group of enzymes found in diverse and fundamental anabolic pathways. These enzymes share a common domain, referred to as the type-I glutamine amidotransferase (GATase) domain, which can occur either as single polypeptides (as with HisH) or as domains of large multifunctional proteins.; GO: 0016763 transferase activity transferring pentosyl groups, 0000105 histidine biosynthetic process, 0005737 cytoplasm.
Probab=29.91 E-value=48 Score=15.27 Aligned_cols=69 Identities=22% Similarity=0.299 Sum_probs=51.4
Q ss_pred EEEECCCHHHHHH----HHHHHHHCCCEEEEECCH-HHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHH-------
Q ss_conf 9997599899999----999999889899999997-9999999718998999983655999799-99999985-------
Q gi|254780312|r 5 ILLAEDDDDMRRF----LIKALGKAGYEVVSCNNG-ASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATEL------- 71 (122)
Q Consensus 5 ILiVDD~~~~r~~----l~~~L~~~G~~v~~a~~g-~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~------- 71 (122)
|.|||=...|... ++..|++.|++...+.|. +++ ...|.|| ||+..-|+ .-+.+|+.
T Consensus 1 i~viDYG~GNL~SlyrGV~~Al~~~G~~~~v~~~~y~~~------~~aD~l~----LPGVG~F~~aM~~l~~~~~~~~~~ 70 (211)
T TIGR01855 1 IVVIDYGVGNLRSLYRGVKRALKRVGAEPVVVKDSYKEL------EKADKLI----LPGVGAFKAAMARLRELGLLDLLE 70 (211)
T ss_pred CEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHH------HCCCEEE----ECCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 978743716568899999999984498179962860343------1068678----578588899999988500587889
Q ss_pred ---CCCCCEE-EEECC
Q ss_conf ---8998599-99437
Q gi|254780312|r 72 ---DPDLKVM-FITGF 83 (122)
Q Consensus 72 ---~~~~pii-~~s~~ 83 (122)
..+.|++ ++-|+
T Consensus 71 ~~~~~~~P~lGiCLGM 86 (211)
T TIGR01855 71 LVVKKKKPVLGICLGM 86 (211)
T ss_pred HHHHCCCCEEEEEHHH
T ss_conf 9996189689998023
No 384
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=29.82 E-value=49 Score=15.26 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf 9999999999889899999997------99999997189989999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLT 52 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~ 52 (122)
..+.+...++..||.+..+.+. .+.++.+.+..+|-+|+
T Consensus 17 l~~gi~~~~~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDGiIi 61 (269)
T cd06275 17 VVRGVEQYCYRQGYNLILCNTEGDPERQRSYLRMLAQKRVDGLLV 61 (269)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999986998999968999899999999999569999999
No 385
>PRK06141 ornithine cyclodeaminase; Validated
Probab=29.61 E-value=49 Score=15.24 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=35.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH
Q ss_conf 6699975998999999999998898999999979999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV 42 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~ 42 (122)
++|.|.+-++..++.+...++..|+.+..+++.++|+.-.
T Consensus 151 ~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~av~~a 190 (313)
T PRK06141 151 KQVRVWGRNPAKAAALAAELREQGFDAEVVTDLEAAVRQA 190 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf 5899993898999999999985099759958999986108
No 386
>pfam03345 DDOST_48kD Oligosaccharyltransferase 48 kDa subunit beta. Members of this family are involved in asparagine-linked protein glycosylation. In particular, dolichyl-diphosphooligosaccharide-protein glycosyltransferase (DDOST), also known as oligosaccharyltransferase EC:2.4.1.119, transfers the high-mannose sugar GlcNAc(2)-Man(9)-Glc(3) from a dolichol-linked donor to an asparagine acceptor in a consensus Asn-X-Ser/Thr motif. In most eukaryotes, the DDOST complex is composed of three subunits, which in humans are described as a 48kD subunit, ribophorin I, and ribophorin II. However, the yeast DDOST appears to consist of six subunits (alpha, beta, gamma, delta, epsilon, zeta). The yeast beta subunit is a 45kD polypeptide, previously discovered as the Wbp1 protein, with known sequence similarity to the human 48kD subunit and the other orthologues. This family includes the 48kD-like subunits from several eukaryotes; it also includes the yeast DDOST beta subunit Wbp1.
Probab=29.49 E-value=44 Score=15.53 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=49.1
Q ss_pred CCEEEEECCCHHHHHHHHH---HHHHCCCEEEE--ECCHHHHHHHHHHCCCC-EEEEEEECCCCCHHHHHHHHHH-HCCC
Q ss_conf 8669997599899999999---99988989999--99979999999718998-9999836559997999999998-5899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIK---ALGKAGYEVVS--CNNGASAYDKVREEPFS-LLLTDIVMPEMDGIELARRATE-LDPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~---~L~~~G~~v~~--a~~g~~al~~~~~~~~d-lii~D~~mP~~dG~el~~~ir~-~~~~ 74 (122)
..|+||+=|+...+...+. .|+..||++.- +.+..-.|....+..|| +||..-...+..|-=-.+.|-+ .+..
T Consensus 16 g~r~LVlld~~~~k~~~S~F~~~L~~rG~~lt~~~~~d~~l~L~~~Ge~lYDhlIlf~p~~k~~g~~ls~~~l~~Fid~G 95 (439)
T pfam03345 16 GGRTLVVLDSLSEKETYSTFFKSLESRGYELTFKTPKDESLSLFKYGERLYDHLILFPPKSKGLGPSLSPKKLLDFIDKG 95 (439)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEEECCCCCCCCEEEEECCCHHHHCCCCCHHHHHHHHHCC
T ss_conf 97189994576315679999999986796489955888752200078300346999366414407778989999998689
Q ss_pred CCEEEEEC-C-CCHHHHHHHHHCCCC
Q ss_conf 85999943-7-978999999976998
Q gi|254780312|r 75 LKVMFITG-F-AAVALNPDSNAPKNA 98 (122)
Q Consensus 75 ~pii~~s~-~-~~~~~~~~~~~~g~~ 98 (122)
--|++..+ . .......-+.+.|+.
T Consensus 96 GNilva~s~~~~~~~ir~l~~E~gi~ 121 (439)
T pfam03345 96 GNVLVALSSETTPDAIRELLSELGIE 121 (439)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCE
T ss_conf 97999938876758999999985915
No 387
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.28 E-value=50 Score=15.20 Aligned_cols=81 Identities=15% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHH----HHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCC
Q ss_conf 8669997599899999999999889899999-997999----9999718998999983655999799-999999858998
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASA----YDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDPDL 75 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~a----l~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~ 75 (122)
+|++||.--...+-..+...|.+.|++|... ..-++. .+.+.+...++...-..+-+.+..+ +++.+.+....+
T Consensus 5 gK~vlITGgs~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDKNEEAANELLEEIKEVGGDAIAVKADVSSEDDVENLVEQIVEKFGKI 84 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98899937845899999999998799899981799899999999999639908999835899999999999999980998
Q ss_pred CEEEEEC
Q ss_conf 5999943
Q gi|254780312|r 76 KVMFITG 82 (122)
Q Consensus 76 pii~~s~ 82 (122)
-+++-.+
T Consensus 85 D~lVnnA 91 (247)
T PRK05565 85 DILVNNA 91 (247)
T ss_pred CEEEECC
T ss_conf 4999899
No 388
>pfam00497 SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3.
Probab=29.27 E-value=50 Score=15.20 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=30.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 669997599899999999999889899999997999999971899899998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D 53 (122)
+||-++.+.... ..+.. ....+..+..+.+..+++.++..++.|+++.|
T Consensus 111 ~~I~v~~g~~~~-~~l~~-~~~~~~~i~~~~~~~~~l~~L~~gr~D~~i~~ 159 (224)
T pfam00497 111 KKVGVQKGTTQE-DLLKE-LAPKGAEIVLYDDQAEALQALAAGRVDAVVAD 159 (224)
T ss_pred CEEEEECCCHHH-HHHHH-HCCCCCEEEEECCHHHHHHHHHCCCEEEEEEC
T ss_conf 779996897799-99986-06244516995427888889874976899957
No 389
>PRK06197 short chain dehydrogenase; Provisional
Probab=29.27 E-value=50 Score=15.20 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=42.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-C---HHHHHHHHHHCC--CCEEEEEEECCCCCHH-HHHHHHHHHCCC
Q ss_conf 86699975998999999999998898999999-9---799999997189--9899998365599979-999999985899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCN-N---GASAYDKVREEP--FSLLLTDIVMPEMDGI-ELARRATELDPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~---g~~al~~~~~~~--~dlii~D~~mP~~dG~-el~~~ir~~~~~ 74 (122)
.|.++|---+..+-...+..|...|++|..+. | |+++.+.+.+.. .++.+.-+.|-+.+.. ++++++++..+.
T Consensus 16 GK~~lITGa~sGIG~~~A~~La~~ga~Vil~~R~~~k~~~a~~~i~~~~~~~~i~~~~lDLssl~sV~~~a~~~~~~~~~ 95 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGNAAAARITAAHPGADVTLQELDLASLASVRAAADALRAAYPR 95 (306)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999916895999999999997849899997989999999999997689985799976643077899999999961898
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
+-+++.
T Consensus 96 lDvLin 101 (306)
T PRK06197 96 IDLLIN 101 (306)
T ss_pred CCEEEE
T ss_conf 768997
No 390
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=29.24 E-value=50 Score=15.20 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=27.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCHHHH
Q ss_conf 669997599899999999999889899999-997999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASA 38 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g~~a 38 (122)
.+|+|---+..+-...+..|...|++|..+ -|.+.+
T Consensus 7 ~TvvITGansGIG~eta~~La~~ga~Vil~~R~~~k~ 43 (322)
T PRK07453 7 GTVLITGASSGVGLYAAKALAKRGWHVIMACRSLKKA 43 (322)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 8399968886899999999997899899997999999
No 391
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=29.11 E-value=50 Score=15.18 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=40.5
Q ss_pred EEEEECCCHHHHHHHHHH---HHHCCCEEEE-----ECCHHHHHHHHHH----CCCCEEEEEEECC-CCCHHHHHHHHH
Q ss_conf 699975998999999999---9988989999-----9997999999971----8998999983655-999799999999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKA---LGKAGYEVVS-----CNNGASAYDKVRE----EPFSLLLTDIVMP-EMDGIELARRAT 69 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~---L~~~G~~v~~-----a~~g~~al~~~~~----~~~dlii~D~~mP-~~dG~el~~~ir 69 (122)
-+..|-||+..+..++.- .+..|+.... ..+-++.++.+.+ ...+-|++-+-+| ..|--.++++|.
T Consensus 34 avilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~ 112 (283)
T COG0190 34 AVILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAID 112 (283)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHCC
T ss_conf 9999679778999999999999981973689857875789999999999608987757999477887778888986058
No 392
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=29.11 E-value=50 Score=15.18 Aligned_cols=52 Identities=13% Similarity=0.370 Sum_probs=33.8
Q ss_pred HHHHHCCCEEEEECCHHHHHHHHHH----------------------CCCCEEEEEEECCCCCHH---HHHHHHHHH
Q ss_conf 9999889899999997999999971----------------------899899998365599979---999999985
Q gi|254780312|r 20 KALGKAGYEVVSCNNGASAYDKVRE----------------------EPFSLLLTDIVMPEMDGI---ELARRATEL 71 (122)
Q Consensus 20 ~~L~~~G~~v~~a~~g~~al~~~~~----------------------~~~dlii~D~~mP~~dG~---el~~~ir~~ 71 (122)
-+|...||+|..+..-..+++.+++ +.||+|+.-+.|--.+-- +++..+++.
T Consensus 138 LyLa~~GfdVTA~D~N~~sl~~L~~ia~~E~L~i~~~~yDIN~a~l~~~YDfI~STVV~mFL~~~~ip~iI~nMQ~~ 214 (289)
T PRK12335 138 LYLALLGFDVTAVDINQASLENLQQIAEKENLNIRAGSYDINSASLQEEYDFILSTVVLMFLNPERIPDIIKNMQEH 214 (289)
T ss_pred HHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHHHHH
T ss_conf 88975798425886899999999999997198877257516666667776789996788642877869999999984
No 393
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=29.06 E-value=50 Score=15.18 Aligned_cols=68 Identities=19% Similarity=0.160 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 9799999997189989999836559-997--99999999858998599994379789999999769986997
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
+..+.++.+....-.++++|+.--+ +.| +++++.+.+. .++|+|.--|.+..+.-.+....|+++.+.
T Consensus 147 ~~~~~~~~~~~~~~eii~t~Id~dGt~~G~d~~l~~~i~~~-~~~pvi~sGGv~s~~di~~l~~~g~~gviv 217 (233)
T cd04723 147 GPEELLRRLAKWPEELIVLDIDRVGSGQGPDLELLERLAAR-ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred CHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 89999999996589599986434465677799999999986-899899988999999999999789989998
No 394
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=29.01 E-value=50 Score=15.17 Aligned_cols=70 Identities=19% Similarity=0.221 Sum_probs=49.0
Q ss_pred CEEEEE-CCCH---HHHHHHHHHHHHCCCEEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 669997-5998---99999999999889899999-------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLA-EDDD---DMRRFLIKALGKAGYEVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiV-DD~~---~~r~~l~~~L~~~G~~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++ +|+. ...+.++..++..|.+|... .|=...+..+++..||+|++- ..+-++..+++++++.
T Consensus 133 kkvai~~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~--~~~~~~~~~~~q~~~~ 210 (333)
T cd06331 133 KRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLGTSDFGSVIEKIKAAGPDVVLST--LVGDSNVAFYRQFAAA 210 (333)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCCCHHHHHHHHHHHC
T ss_conf 87999944861789999999999998599499999706997247999999876599999993--5660399999999975
Q ss_pred CCC
Q ss_conf 899
Q gi|254780312|r 72 DPD 74 (122)
Q Consensus 72 ~~~ 74 (122)
.-+
T Consensus 211 G~~ 213 (333)
T cd06331 211 GLD 213 (333)
T ss_pred CCC
T ss_conf 999
No 395
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=29.00 E-value=50 Score=15.17 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=15.7
Q ss_pred HHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEE
Q ss_conf 999999999889899999997------9999999718998999
Q gi|254780312|r 15 RRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLL 51 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii 51 (122)
...+...+++.||.+..+.+. .++++.+.++.+|-+|
T Consensus 18 ~~~ie~~~~~~gy~~ll~~s~~~~~~e~~~l~~l~~~~vdGiI 60 (268)
T cd06270 18 LSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALI 60 (268)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999998599999995899989999999999965999999
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=28.99 E-value=37 Score=15.93 Aligned_cols=102 Identities=12% Similarity=0.027 Sum_probs=52.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEE-E----------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 66999759989999999999988989999-9----------997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVS-C----------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~-a----------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
.|+..+||.....- ...+ .+.. + -+-.+++...-...||.|++. ++-|-|....++..
T Consensus 53 ~rivtiEd~~El~l------~~~~-~v~l~~~~~~~~~~~~~~~~~li~~aLR~~pd~iivG----EiR~~Ea~~~l~a~ 121 (186)
T cd01130 53 ERIITIEDTAELQL------PHPN-WVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIVG----EVRGGEALDLLQAM 121 (186)
T ss_pred CCEEEECCCHHHCC------CCCC-EEEEEEECCCCCCCCEECHHHHHHHHCCCCCCEEECC----CCCCHHHHHHHHHH
T ss_conf 64598415354047------7775-6888860464578650349999887366899737317----56839999999999
Q ss_pred CCCCCEEEEECCCCH--HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 899859999437978--999999976998699769798999999999960
Q gi|254780312|r 72 DPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 72 ~~~~pii~~s~~~~~--~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
...-+-.+.|-|++. +...+....- ...|.+.+.+...|...+.
T Consensus 122 ~tGh~g~ltTiHa~s~~~ai~Rl~~l~----~~~~~~~~~~~~~ia~~id 167 (186)
T cd01130 122 NTGHPGGMTTIHANSAEEALTRLELLP----SNVPLGRPLLREQIKEAID 167 (186)
T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHH----HCCCCCHHHHHHHHHHHCC
T ss_conf 748986030315899999999999887----5479999999999997577
No 397
>PRK04965 nitric oxide reductase; Provisional
Probab=28.75 E-value=43 Score=15.55 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=33.9
Q ss_pred CCCEEEEE----EECCCCCH---------HHHHHHHHHHCCCCCEEEEECC--CCHHHHHHHHHCCCCEEEEC-------
Q ss_conf 99899998----36559997---------9999999985899859999437--97899999997699869976-------
Q gi|254780312|r 46 PFSLLLTD----IVMPEMDG---------IELARRATELDPDLKVMFITGF--AAVALNPDSNAPKNAKVLSK------- 103 (122)
Q Consensus 46 ~~dlii~D----~~mP~~dG---------~el~~~ir~~~~~~pii~~s~~--~~~~~~~~~~~~g~~~~l~K------- 103 (122)
+||-+++- -..|.+.| ++=++++++.-.+.+-+++.|- -.-+.+......|..-.+.-
T Consensus 99 ~YDkLVLATGa~p~~ppi~G~~~v~tlr~l~d~~~~~~~l~~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~ll~ 178 (378)
T PRK04965 99 QYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLA 178 (378)
T ss_pred ECCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 46879993588755789999647998199999999997751497899989838899999999967988999766674422
Q ss_pred CCCHHHHHHHHHHHHHC
Q ss_conf 97989999999999603
Q gi|254780312|r 104 PFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 104 P~~~~~L~~~i~~~l~~ 120 (122)
.+-+++..+.+.+.|+.
T Consensus 179 ~~l~~~~~~~l~~~l~~ 195 (378)
T PRK04965 179 SLMPPEVSSRLQHRLTE 195 (378)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 11789999999999997
No 398
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=28.74 E-value=51 Score=15.14 Aligned_cols=40 Identities=23% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 79999999985899859999437978999999976998699
Q gi|254780312|r 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 61 G~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
-.++++++|+. .++|+|...+..+.+..+++.+.|..+++
T Consensus 273 ~~~~a~~ik~~-~~~pvi~~G~i~~~~~ae~~l~~g~~D~V 312 (343)
T cd04734 273 FLPLAARIKQA-VDLPVFHAGRIRDPAEAEQALAAGHADMV 312 (343)
T ss_pred CHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 48899999997-29859997998999999999987996216
No 399
>pfam03830 PTSIIB_sorb PTS system sorbose subfamily IIB component.
Probab=28.72 E-value=51 Score=15.14 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=42.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHCCC---CEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 66999759989999999999988---9899999997999999971899---89999836559997999999998589985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA---GYEVVSCNNGASAYDKVREEPF---SLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~---G~~v~~a~~g~~al~~~~~~~~---dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
++|+||||....-.+.+..|... |.++.. -+.++|.+.+.+..+ .++++ ....+-+.++-+....++
T Consensus 27 ~~IiVvdD~~A~d~~~k~~l~ma~P~gvk~~i-~sv~~a~~~l~~~~~~~~~v~il------~k~~~da~~l~~~g~~i~ 99 (151)
T pfam03830 27 NRIIVVNDEVANDELRKTLLKMAAPAGVKVSI-FSVEKAIEVIKKGKYDKQKVFLL------VKNPQDALRLVEGGVPIK 99 (151)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCCCCCEEEE-EEHHHHHHHHHCCCCCCCEEEEE------ECCHHHHHHHHHCCCCCC
T ss_conf 99999775224799999999963899987999-87999999985767789669999------899999999997499988
Q ss_pred EEEE
Q ss_conf 9999
Q gi|254780312|r 77 VMFI 80 (122)
Q Consensus 77 ii~~ 80 (122)
-+-+
T Consensus 100 ~vNv 103 (151)
T pfam03830 100 ELNV 103 (151)
T ss_pred EEEE
T ss_conf 7998
No 400
>PRK09482 xni exonuclease IX; Provisional
Probab=28.68 E-value=51 Score=15.14 Aligned_cols=113 Identities=10% Similarity=-0.007 Sum_probs=50.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHH-HHHHHHCCCCEEEEEEECCCCC---HHHHHHHHHHHCCCCC
Q ss_conf 98669997599899999999999889899999997999-9999718998999983655999---7999999998589985
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-YDKVREEPFSLLLTDIVMPEMD---GIELARRATELDPDLK 76 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~a-l~~~~~~~~dlii~D~~mP~~d---G~el~~~ir~~~~~~p 76 (122)
|.+|+|+||-+..+++.... +...+...-.......+ ..+++...|+-+++=+.-+... =.++...-|..++.+|
T Consensus 1 Mm~~llLIDG~~l~~Ray~a-~p~~~~~~~~~~~~~~~l~kli~~~~P~~i~v~fD~~~~~~~fR~e~~~~YKanR~~~p 79 (256)
T PRK09482 1 MMNHLLIIDALNLIRRIHAV-QPSPNDIAACVETCQHALDKLIRHSQPTHAVAVFDGDERSSGWRHQLLPDYKAGRKPMP 79 (256)
T ss_pred CCCCEEEECCCHHHHHHHHC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 99728998462899999843-77899988678999999999999719987999984799876537776488760999999
Q ss_pred EEEEECCCCHHHHHHH-HHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9999437978999999-9769986997697989999999999
Q gi|254780312|r 77 VMFITGFAAVALNPDS-NAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 77 ii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
--+. .+.....+. ...|+..+-..-+.-++++.++.+.
T Consensus 80 d~L~---~Q~~~i~~~l~~~gi~~~~~~g~EADDiIatla~~ 118 (256)
T PRK09482 80 EALA---QGLPAIRAAFEELGIDSWLADGNEADDLIATLAVK 118 (256)
T ss_pred HHHH---HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 8999---99999999999779989835781488999999999
No 401
>PRK07053 glutamine amidotransferase; Provisional
Probab=28.66 E-value=30 Score=16.48 Aligned_cols=83 Identities=14% Similarity=0.134 Sum_probs=46.7
Q ss_pred CCCEEEEECCCH-HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCC-EEEEEEECCCCCH--H----HHHHHHHH-H
Q ss_conf 986699975998-999999999998898999999979999999718998-9999836559997--9----99999998-5
Q gi|254780312|r 1 MNQKILLAEDDD-DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMDG--I----ELARRATE-L 71 (122)
Q Consensus 1 M~~rILiVDD~~-~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~d-lii~D~~mP~~dG--~----el~~~ir~-~ 71 (122)
|.|||||+-..+ ..--.+...|.+.|+.+....-...-..--.-..|| +|++.--|--.|- + +..+.||+ .
T Consensus 1 mmk~ilvlqH~~~E~pG~i~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~livlGGpms~~d~~~~Pwl~~e~~lIr~a~ 80 (235)
T PRK07053 1 MMKTAVAIRHVAFEDLGSFEQVLGERGYRVRYVDVGVDDLEVLDALEPDLLVVLGGPIGVYDDALYPFLAPEIALLRQRL 80 (235)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99539999689988986999999978995999967889889999666799999389989887766855899999999999
Q ss_pred CCCCCEE-EEECC
Q ss_conf 8998599-99437
Q gi|254780312|r 72 DPDLKVM-FITGF 83 (122)
Q Consensus 72 ~~~~pii-~~s~~ 83 (122)
..++|++ ++-|+
T Consensus 81 ~~~~PvLGIClG~ 93 (235)
T PRK07053 81 AAGLPTLGICLGA 93 (235)
T ss_pred HCCCCEEEECHHH
T ss_conf 8699889984738
No 402
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=28.46 E-value=51 Score=15.11 Aligned_cols=30 Identities=17% Similarity=0.448 Sum_probs=21.1
Q ss_pred HHHHHCCCCEEEEEEECCCCCHHHHHHHHHH
Q ss_conf 9997189989999836559997999999998
Q gi|254780312|r 40 DKVREEPFSLLLTDIVMPEMDGIELARRATE 70 (122)
Q Consensus 40 ~~~~~~~~dlii~D~~mP~~dG~el~~~ir~ 70 (122)
+.+....+|+|+.|+ +|+.+|.......+.
T Consensus 111 ~~~~~~~~DvVlSDm-APn~tG~~~~D~~~s 140 (209)
T PRK11188 111 ERVGDSKVDVVMSDM-APNMSGTPAVDIPRA 140 (209)
T ss_pred HHHCCCCCCEEECCC-CCCCCCCHHHHHHHH
T ss_conf 985898730896666-656678703359999
No 403
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.41 E-value=51 Score=15.11 Aligned_cols=63 Identities=8% Similarity=0.149 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECC--HH----HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999988989999999--79----99999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNN--GA----SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~--g~----~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+...+++.||.+..+.+ .. ....++.++..|-+|+ ++....-+..+.+++. .+|+|++
T Consensus 21 ~l~~gie~~~~~~Gy~lli~~~~~~~~~~~~~~~~l~~~~vDGiIi---~~~~~~~~~~~~l~~~--~iP~V~i 89 (270)
T cd06294 21 EVLRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFIL---LYSREDDPIIDYLKEE--KFPFVVI 89 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---ECCCCCHHHHHHHHHC--CCCEEEE
T ss_conf 9999999999985998999918996999999999998279988999---5798984999999976--9999998
No 404
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=28.41 E-value=51 Score=15.11 Aligned_cols=33 Identities=24% Similarity=0.344 Sum_probs=24.6
Q ss_pred EEEECCCCCHHHHHHHHHHHC---CCCCEEEEECCCCHH
Q ss_conf 983655999799999999858---998599994379789
Q gi|254780312|r 52 TDIVMPEMDGIELARRATELD---PDLKVMFITGFAAVA 87 (122)
Q Consensus 52 ~D~~mP~~dG~el~~~ir~~~---~~~pii~~s~~~~~~ 87 (122)
-|+.+|+ -++.++|++.. .++-+.++|+.+...
T Consensus 27 eDlklP~---~elg~~I~~~f~~gk~~~VtVlsAmGeE~ 62 (69)
T cd04468 27 EDLKLPE---GELGKEIREKFDEGKDVLVTVLSAMGEEQ 62 (69)
T ss_pred HCCCCCC---HHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf 1256994---79999999997679918999963069214
No 405
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=28.22 E-value=52 Score=15.09 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=59.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEE-EEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 669997599899999999999889899-999997999999971899899998365599979999999985-899859999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEV-VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL-DPDLKVMFI 80 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v-~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~-~~~~pii~~ 80 (122)
-+|.-.|-.+.+.+...+-|+.+|+.= ..... .+..+......+|.+++|+. +=++.++.+.+. .|.-.++++
T Consensus 120 G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~-~Dv~~~~~~~~vDav~LDmp----~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 120 GHVTTYEIREDFAKTARENLSEFGLGDRVTLKL-GDVREGIDEEDVDAVFLDLP----DPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred CEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCCCCEEEECCC----CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 459999952789999999999842456137870-54000246554677997589----8489999999871799679998
Q ss_pred ECCCCHHHH-HHHHH-CCCC
Q ss_conf 437978999-99997-6998
Q gi|254780312|r 81 TGFAAVALN-PDSNA-PKNA 98 (122)
Q Consensus 81 s~~~~~~~~-~~~~~-~g~~ 98 (122)
+.+.++-.. .++++ .|..
T Consensus 195 ~P~veQv~kt~~~l~~~g~~ 214 (256)
T COG2519 195 SPTVEQVEKTVEALRERGFV 214 (256)
T ss_pred CCCHHHHHHHHHHHHHCCCC
T ss_conf 39789999999999866951
No 406
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=28.08 E-value=52 Score=15.07 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH-------------HHCCCCCEEE
Q ss_conf 999999999998898999999979999999718998999983655999799999999-------------8589985999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT-------------ELDPDLKVMF 79 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir-------------~~~~~~pii~ 79 (122)
..-+.+...+...+.+|..+.-+ .. ......+-+.++.++- ...++++.-. .....+|.++
T Consensus 252 ~l~~~~~~a~~~l~~~vi~~~~~-~~-~~~~~~p~n~~v~~~~----p~~~~l~~ad~vI~hGG~gtt~eaL~~gvP~vv 325 (406)
T COG1819 252 ELLAIVLEALADLDVRVIVSLGG-AR-DTLVNVPDNVIVADYV----PQLELLPRADAVIHHGGAGTTSEALYAGVPLVV 325 (406)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC-CC-CCCCCCCCCEEEECCC----CHHHHHHCCCEEEECCCHHHHHHHHHCCCCEEE
T ss_conf 89999999985499649997367-64-2346888774786157----589887407989917985799999973999898
Q ss_pred EECCCCHH-HHHHHHHCCCCEEEEC-CCCHHHHHHHHHHHHHCC
Q ss_conf 94379789-9999997699869976-979899999999996036
Q gi|254780312|r 80 ITGFAAVA-LNPDSNAPKNAKVLSK-PFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 80 ~s~~~~~~-~~~~~~~~g~~~~l~K-P~~~~~L~~~i~~~l~~~ 121 (122)
+-...++. .+.+..+.|+...+.+ +.+.+.|.++|+++|+.+
T Consensus 326 ~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 326 IPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred ECCCCCHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHCCH
T ss_conf 27873078799999974988312756588899999999996739
No 407
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=28.04 E-value=52 Score=15.07 Aligned_cols=39 Identities=23% Similarity=0.357 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEE
Q ss_conf 9999999999889899999997------99999997189989999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLT 52 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~ 52 (122)
+...+...+++.||.+....+. .+.++.+.+..+|-+|+
T Consensus 17 ~~~gi~~~a~~~gy~~~i~~~~~~~~~~~~~i~~l~~~~vDgiIi 61 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIIL 61 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 999999999986998999978999899999999999579999996
No 408
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.85 E-value=53 Score=15.05 Aligned_cols=62 Identities=16% Similarity=0.249 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 14 MRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 14 ~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
+.+.+...+.+.||.+..+.++ .+.++.+.++.+|-+|+--.- .--+..+.+++ ..+|++++
T Consensus 17 i~~gi~~~a~~~gy~l~i~~s~~~~~~e~~~i~~l~~~~vDgiIl~~~~---~~~~~~~~~~~--~~iPvV~i 84 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTG---NNKELYQRLAK--NGKPVVLV 84 (267)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCC---CCHHHHHHHHH--CCCCEEEE
T ss_conf 9999999999869989999789998999999999996699999985877---99899999997--69989996
No 409
>PRK08643 acetoin reductase; Validated
Probab=27.67 E-value=53 Score=15.03 Aligned_cols=79 Identities=13% Similarity=0.164 Sum_probs=43.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHH----HHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCCC
Q ss_conf 98669997599899999999999889899999997999999----9718998999983655999799-999999858998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK----VREEPFSLLLTDIVMPEMDGIE-LARRATELDPDL 75 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~----~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~~ 75 (122)
|+|.+||.--...+-..+...|-+.|+.|..+.--.+.++. +++...+++..-..+-+.+-.+ +++++.+....+
T Consensus 1 mnKvalVTGg~~GIG~aia~~la~~Ga~V~i~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i 80 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGDL 80 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 98499995757889999999999879999999698899999999998539909999805899999999999999982998
Q ss_pred CEEE
Q ss_conf 5999
Q gi|254780312|r 76 KVMF 79 (122)
Q Consensus 76 pii~ 79 (122)
-+++
T Consensus 81 DiLV 84 (256)
T PRK08643 81 NVVV 84 (256)
T ss_pred CEEE
T ss_conf 7999
No 410
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=27.55 E-value=53 Score=15.02 Aligned_cols=96 Identities=20% Similarity=0.203 Sum_probs=52.3
Q ss_pred EEEECCCHHHH---HHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCH----HHHHHHH-HHH--CCC
Q ss_conf 99975998999---9999999988989999999799999997189989999836559997----9999999-985--899
Q gi|254780312|r 5 ILLAEDDDDMR---RFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG----IELARRA-TEL--DPD 74 (122)
Q Consensus 5 ILiVDD~~~~r---~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG----~el~~~i-r~~--~~~ 74 (122)
|-+--.+|... ..+...|...||+|..-.||.-..+.+. ..|.+.+|...|+ +| +.....+ +.. .++
T Consensus 76 V~iTGGEPllq~~~~~L~~~l~~~g~~v~iETnGt~~~~~~~--~~d~~~~d~K~ps-Sg~~~~~~~~~~~l~~~~~~~~ 152 (238)
T TIGR03365 76 VSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR--DLDDLTLSPKPPS-SGMETDWQALDDCIERLDDGPQ 152 (238)
T ss_pred EEECCCCHHHHCCHHHHHHHHHHCCCEEEEECCCCCCCCCCC--CCCEEEEEEECCC-CCCCCCHHHHHHHHHHHCCCCC
T ss_conf 994599834441899999999857984999789987600045--5788999647799-9896346789999998444897
Q ss_pred --CCEEEEECCCCHHHHHHHH-HCCCCEEEECC
Q ss_conf --8599994379789999999-76998699769
Q gi|254780312|r 75 --LKVMFITGFAAVALNPDSN-APKNAKVLSKP 104 (122)
Q Consensus 75 --~pii~~s~~~~~~~~~~~~-~~g~~~~l~KP 104 (122)
+++++ +...+.+.+.... +.+..-+...|
T Consensus 153 ~~~KFVI-~~~~D~~~a~ei~~~~~~~pv~l~p 184 (238)
T TIGR03365 153 TSLKVVV-FDDADYAYAKEVHARYPDLPFYLQP 184 (238)
T ss_pred CEEEEEE-CCHHHHHHHHHHHHHCCCCCEEECC
T ss_conf 0699997-6789999999999974799789656
No 411
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=27.55 E-value=53 Score=15.02 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=43.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCE-EEE-ECCHHHHHHHHHHCCCCEEEEEEECCC--CCHHHHHHHHHHHCCCCCEE
Q ss_conf 66999759989999999999988989-999-999799999997189989999836559--99799999999858998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYE-VVS-CNNGASAYDKVREEPFSLLLTDIVMPE--MDGIELARRATELDPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~-v~~-a~~g~~al~~~~~~~~dlii~D~~mP~--~dG~el~~~ir~~~~~~pii 78 (122)
.+|.-+|=++...+..+......+.. +.. ..|..+. .....+.||+|+++..+.. .+=.++++++++.-..=-.+
T Consensus 22 ~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~fD~V~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~ 100 (107)
T cd02440 22 ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEEL-PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVL 100 (107)
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHC-CHHHCCCEEEEEEECCEECCCCCHHHHHHHHHHHCCCCCEE
T ss_conf 88999989888999999987532788646714886788-63205753199991750106518999999999874858199
Q ss_pred EEE
Q ss_conf 994
Q gi|254780312|r 79 FIT 81 (122)
Q Consensus 79 ~~s 81 (122)
++|
T Consensus 101 ~is 103 (107)
T cd02440 101 VLT 103 (107)
T ss_pred EEE
T ss_conf 999
No 412
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=27.52 E-value=53 Score=15.01 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=43.3
Q ss_pred HHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999718998999983655-999799999999858998599994379789999999769986997
Q gi|254780312|r 40 DKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 40 ~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
..+-+...|++++|..=- ...-.++++.+|+..|++||| .=.....+...+.++.|++.+..
T Consensus 159 ~~Lv~AGvD~lvID~AhGhs~~~~e~ik~ik~~~p~v~VI-aGNVaT~~~a~~Li~aGAD~VkV 221 (404)
T PRK06843 159 EELVKAHVDILVIDSAHGHSTRIIELVKTIKNKYPNLDLI-AGNIVTKEAALDLINVGADCLKV 221 (404)
T ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9999769999999688752178999999999767996166-30305799999999819899995
No 413
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=27.51 E-value=53 Score=15.01 Aligned_cols=77 Identities=13% Similarity=0.240 Sum_probs=39.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC--CCEEEEECCH-------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCC
Q ss_conf 66999759989999999999988--9899999997-------99999997189989999836559997999999998589
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA--GYEVVSCNNG-------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~--G~~v~~a~~g-------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~ 73 (122)
.||.++-..+.+.+.+...+... |..+....+| .+..+.+.+..+|+|++-+.+|.-. .++.+.++..
T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~f~~~~~~~i~~~I~~~~~div~vglG~PkQE--~~~~~~~~~l- 123 (171)
T cd06533 47 LRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQE--LWIARHKDRL- 123 (171)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHH--HHHHHHHHHC-
T ss_conf 7499980898999999999997889937999878999806689999999864999999967982889--9999999877-
Q ss_pred CCCEEEEEC
Q ss_conf 985999943
Q gi|254780312|r 74 DLKVMFITG 82 (122)
Q Consensus 74 ~~pii~~s~ 82 (122)
..++++..|
T Consensus 124 ~~~~~~~vG 132 (171)
T cd06533 124 PVPVAIGVG 132 (171)
T ss_pred CCCEEEECC
T ss_conf 998698645
No 414
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=27.37 E-value=54 Score=15.00 Aligned_cols=21 Identities=33% Similarity=0.126 Sum_probs=9.3
Q ss_pred EEEEEEECCCCCHHHHHHHHH
Q ss_conf 999983655999799999999
Q gi|254780312|r 49 LLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 49 lii~D~~mP~~dG~el~~~ir 69 (122)
+++-|-.|.+-.-+|.+.-..
T Consensus 132 ~~iGDGel~EG~~wEAl~~A~ 152 (255)
T cd02012 132 VLLGDGELQEGSVWEAASFAG 152 (255)
T ss_pred EEECCCCCCCCHHHHHHHHHH
T ss_conf 994251103312899999985
No 415
>PRK09271 flavodoxin; Provisional
Probab=27.22 E-value=54 Score=14.98 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=50.7
Q ss_pred EEEE-----CCCHHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEEEE------ECCCCCHHHHHHHHHHH
Q ss_conf 9997-----5998999999999998898999999--979999999718998999983------65599979999999985
Q gi|254780312|r 5 ILLA-----EDDDDMRRFLIKALGKAGYEVVSCN--NGASAYDKVREEPFSLLLTDI------VMPEMDGIELARRATEL 71 (122)
Q Consensus 5 ILiV-----DD~~~~r~~l~~~L~~~G~~v~~a~--~g~~al~~~~~~~~dlii~D~------~mP~~dG~el~~~ir~~ 71 (122)
|||| -..+.+...++..|+..|++|+... ....+-....-..||++++-- .+|+ +..++...+.+.
T Consensus 3 vlIvYaS~TGNTE~vA~~I~~~l~~~G~eV~~~e~d~~~~~~~~~d~~~yDl~llG~yTwgdG~lPd-E~~DF~e~L~~~ 81 (160)
T PRK09271 3 ILLAYASLSGNTREVARMIAARCEEAGHAVTWVETDLQTLAQAPLDPEEYDLFLLGTWTDNAGRTPP-EMKRFIAELVET 81 (160)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHCCCCCCCCCEEEEECCCCCCCCCCH-HHHHHHHHHHHH
T ss_conf 8999984887689999999999997698237987010232203356111888999657048998966-789999999860
Q ss_pred CCCCCEEEEECCCCH
Q ss_conf 899859999437978
Q gi|254780312|r 72 DPDLKVMFITGFAAV 86 (122)
Q Consensus 72 ~~~~pii~~s~~~~~ 86 (122)
.-.-++..+-|.++.
T Consensus 82 dl~gk~~avFGsGDt 96 (160)
T PRK09271 82 IGKPPNVAVFGTGET 96 (160)
T ss_pred CCCCCEEEEECCCCC
T ss_conf 456876999877777
No 416
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=27.08 E-value=54 Score=14.97 Aligned_cols=32 Identities=31% Similarity=0.351 Sum_probs=26.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 66999759989999999999988989999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
.+|-+=.|+..+...+...|..|||.|.+-..
T Consensus 58 ~ti~l~~D~S~F~~ALEaaLkgWGYaVvtd~k 89 (144)
T PRK13835 58 TTIKLKKDTSPFGQALEAALKGWGYAVVTDQK 89 (144)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 23898327878899999997307459975475
No 417
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=26.91 E-value=55 Score=14.95 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCCEEEEECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 89899999997999999971899899998
Q gi|254780312|r 25 AGYEVVSCNNGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 25 ~G~~v~~a~~g~~al~~~~~~~~dlii~D 53 (122)
.+..|..+.+-.+|...+.+..+|+||+|
T Consensus 120 ~~~~v~V~~~R~~~~~~l~~~~~dviIlD 148 (334)
T PRK00652 120 TGAPVAVSPDRVKAIKALLALGADIIILD 148 (334)
T ss_pred CCCCEEEECCHHHHHHHHHHCCCCEEEEC
T ss_conf 89839995668999999996599999974
No 418
>PRK13134 consensus
Probab=26.70 E-value=55 Score=14.92 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=24.1
Q ss_pred CCCCCEEEEECCC------CHHHHHHHHHCCCCEEEEC--CCCH
Q ss_conf 8998599994379------7899999997699869976--9798
Q gi|254780312|r 72 DPDLKVMFITGFA------AVALNPDSNAPKNAKVLSK--PFHL 107 (122)
Q Consensus 72 ~~~~pii~~s~~~------~~~~~~~~~~~g~~~~l~K--P~~~ 107 (122)
..++|+|+||-++ -.....++.+.|++++|.- |+..
T Consensus 93 ~~~~pivlMtY~N~i~~yG~e~F~~~~~~aGvdGvIipDLP~eE 136 (257)
T PRK13134 93 RLRAGLVLMGYLNPFMQYGFERFVRDAADAGVAGCIIPDLPLDE 136 (257)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 68999899853459997468999999986798759946999778
No 419
>PRK03220 consensus
Probab=26.65 E-value=55 Score=14.92 Aligned_cols=81 Identities=16% Similarity=0.099 Sum_probs=55.6
Q ss_pred HHHHHHHHHC-CCCEEEEEEECCC-CCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE------ECCC
Q ss_conf 9999999718-9989999836559-997--9999999985899859999437978999999976998699------7697
Q gi|254780312|r 36 ASAYDKVREE-PFSLLLTDIVMPE-MDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL------SKPF 105 (122)
Q Consensus 36 ~~al~~~~~~-~~dlii~D~~mP~-~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l------~KP~ 105 (122)
.+.+..+.+. .-.++++|+.--+ +.| +++++.+++. .++|+|.--|.+..+...++.+.|+++.+ .+-+
T Consensus 162 ~~~i~~~~~~g~geil~tdI~rDGt~~G~d~~l~~~i~~~-~~~piIasGGv~s~~di~~l~~~g~~gv~~g~a~~~~~~ 240 (257)
T PRK03220 162 VEWAARGAELGVGEILLNSMDADGTKAGFDLEMLRAVRAA-VTVPVIASGGAGAVEHFAPAVAAGADAVLAASVFHFGEL 240 (257)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCC
T ss_conf 9999998626988899998868660237896999999974-899989987899999999999789979987468788998
Q ss_pred CHHHHHHHHHHH
Q ss_conf 989999999999
Q gi|254780312|r 106 HLRDLVNEVNRL 117 (122)
Q Consensus 106 ~~~~L~~~i~~~ 117 (122)
++.++.+.+++.
T Consensus 241 s~~~~k~~l~~~ 252 (257)
T PRK03220 241 TIGQVKAALAAA 252 (257)
T ss_pred CHHHHHHHHHHC
T ss_conf 899999999987
No 420
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=26.48 E-value=56 Score=14.90 Aligned_cols=78 Identities=17% Similarity=0.071 Sum_probs=48.7
Q ss_pred CEEEEECCCH----HHHHHHHHHHHHCCC--EEEEE-------CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 6699975998----999999999998898--99999-------9979999999718998999983655999799999999
Q gi|254780312|r 3 QKILLAEDDD----DMRRFLIKALGKAGY--EVVSC-------NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiVDD~~----~~r~~l~~~L~~~G~--~v~~a-------~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+||.++.+|. ...+.+...+++.|. ++... .|-..-+..+++..||+|++-. -..+...++++.+
T Consensus 139 k~vaii~~d~~~G~~~~~~~~~~~~~~g~~~~vv~~~~~~~~~~D~s~~l~~i~~~~pd~v~~~~--~~~~~~~~~~q~~ 216 (346)
T cd06330 139 KTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSL--WGGDLVTFVRQAN 216 (346)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHH
T ss_conf 08999938956779999999999986178965888882589986469999999967999999906--6457999999999
Q ss_pred HHC--CCCCEEEEEC
Q ss_conf 858--9985999943
Q gi|254780312|r 70 ELD--PDLKVMFITG 82 (122)
Q Consensus 70 ~~~--~~~pii~~s~ 82 (122)
+.. +..+++...+
T Consensus 217 ~~G~~~~~~~~~~~~ 231 (346)
T cd06330 217 ARGLFDGTTVVLTLT 231 (346)
T ss_pred HCCCCCCCEEEEECC
T ss_conf 749877974999657
No 421
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.45 E-value=56 Score=14.90 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=7.8
Q ss_pred ECCCCHHHHHHHHHHHHH
Q ss_conf 769798999999999960
Q gi|254780312|r 102 SKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 102 ~KP~~~~~L~~~i~~~l~ 119 (122)
..+++.+.-.+.++++|+
T Consensus 153 ~~~~~~~~g~~~~~~ll~ 170 (266)
T cd06278 153 AGDYSYEGGYEAARRLLA 170 (266)
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 189998999999999984
No 422
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=26.43 E-value=56 Score=14.89 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=10.8
Q ss_pred CCCEEEEECCCHHH
Q ss_conf 98669997599899
Q gi|254780312|r 1 MNQKILLAEDDDDM 14 (122)
Q Consensus 1 M~~rILiVDD~~~~ 14 (122)
|.+|||++|=|+..
T Consensus 27 ~G~rVl~iD~Dp~~ 40 (212)
T cd02117 27 MGKKVLQVGCDPKA 40 (212)
T ss_pred CCCEEEEEECCCCC
T ss_conf 69969999038998
No 423
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=26.36 E-value=56 Score=14.89 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=34.5
Q ss_pred ECCHHHHHHHHHHCCCCEEEEEEE-------CCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 999799999997189989999836-------55999799999999858998599994379789999999769986997
Q gi|254780312|r 32 CNNGASAYDKVREEPFSLLLTDIV-------MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 32 a~~g~~al~~~~~~~~dlii~D~~-------mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
.++-++|+...+-+ +|+|=+-+. -+....|++++++.+.. ..|+|.=-.+...+...++++.|+...+.
T Consensus 130 ~st~ee~~~A~~~G-~D~vgTTL~GYT~~t~~~~~PD~~lv~~l~~~~-~~pvIaEGri~tPe~a~~a~~~GA~aVVV 205 (219)
T cd04729 130 ISTLEEALNAAKLG-FDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIAEGRINSPEQAAKALELGADAVVV 205 (219)
T ss_pred CCCHHHHHHHHHCC-CCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf 48899999999849-989970214567787889998789999999975-99399706989999999999839989998
No 424
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=26.28 E-value=56 Score=14.88 Aligned_cols=69 Identities=16% Similarity=0.267 Sum_probs=41.8
Q ss_pred HHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH----CCCCCEEEEECCCCHHHHHH--HHHCCCC---EEEEC
Q ss_conf 7999999971899899998365599979999999985----89985999943797899999--9976998---69976
Q gi|254780312|r 35 GASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL----DPDLKVMFITGFAAVALNPD--SNAPKNA---KVLSK 103 (122)
Q Consensus 35 g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~----~~~~pii~~s~~~~~~~~~~--~~~~g~~---~~l~K 103 (122)
+.|+++.++++.+|+||+|-.=-..---+|.++.++. .|+.-|.+|=|--.+....| |.+..++ -+|+|
T Consensus 192 A~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIGQAA~~QAkAFK~~~~vGSvIiTK 269 (453)
T TIGR01425 192 ASEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIGQAAFSQAKAFKDSVEVGSVIITK 269 (453)
T ss_pred ECCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 002011322127847998379873225888899876863349983699806616678899999863003500388751
No 425
>PRK13337 putative lipid kinase; Reviewed
Probab=26.15 E-value=56 Score=14.86 Aligned_cols=82 Identities=21% Similarity=0.247 Sum_probs=47.0
Q ss_pred CCCEEEEECC-------CHHHHHHHHHHHHHCCCEEEE--ECCHHHHHHHHHH---CCCCEEEEEEECCCCCHH--HHHH
Q ss_conf 9866999759-------989999999999988989999--9997999999971---899899998365599979--9999
Q gi|254780312|r 1 MNQKILLAED-------DDDMRRFLIKALGKAGYEVVS--CNNGASAYDKVRE---EPFSLLLTDIVMPEMDGI--ELAR 66 (122)
Q Consensus 1 M~~rILiVDD-------~~~~r~~l~~~L~~~G~~v~~--a~~g~~al~~~~~---~~~dlii~D~~mP~~dG~--el~~ 66 (122)
|-||++++=. -......+...|+..|+++.. .....+|.+..++ ..+|+|+.= +-||- |++.
T Consensus 1 mmkr~~~I~NP~sG~g~~~~~~~~i~~~l~~~g~~~~~~~T~~~g~a~~~a~~~~~~~~d~vv~~----GGDGTv~evvn 76 (305)
T PRK13337 1 MMKRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAARQAAERNFDLVIAA----GGDGTLNEVVN 76 (305)
T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCEEEEE----ECCHHHHHHHH
T ss_conf 98459999997568864677899999999987996999982780289999999877799989999----57628999999
Q ss_pred HHHHHCCCCCEEEE-ECCCCH
Q ss_conf 99985899859999-437978
Q gi|254780312|r 67 RATELDPDLKVMFI-TGFAAV 86 (122)
Q Consensus 67 ~ir~~~~~~pii~~-s~~~~~ 86 (122)
.+.+....+|+=++ .|.++.
T Consensus 77 gl~~~~~~~~lgiiP~GTgNd 97 (305)
T PRK13337 77 GLAEKENRPKLGIIPVGTTND 97 (305)
T ss_pred HHHCCCCCCEEEEEECCCCHH
T ss_conf 985589986289970787457
No 426
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=25.98 E-value=55 Score=14.92 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=32.2
Q ss_pred EEEECCCHHHHHHHHHHHHH--CCCEEEEECCHHHHHHHH----HHCCCCEEEEEEE
Q ss_conf 99975998999999999998--898999999979999999----7189989999836
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKV----REEPFSLLLTDIV 55 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~--~G~~v~~a~~g~~al~~~----~~~~~dlii~D~~ 55 (122)
.-+||-+...=...+..|.- ...-+..=.+|++||+.. ++...|+|++|--
T Consensus 86 ~afiDAEHAlD~~YA~~LGv~~~~L~~sQPd~GE~ALeI~~~L~rSgAvD~iVvDSV 142 (322)
T TIGR02012 86 AAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSV 142 (322)
T ss_pred EEEEECHHHCCHHHHHHHCCCHHHHEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 899845130377889983645247112088871469999999872376117997340
No 427
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=25.89 E-value=57 Score=14.83 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHCCCCEEEEEEECCC--------CCH------HHHHHHHHHHCCCCCEEEEECCCCH--HHHHHHHHCCC
Q ss_conf 9799999997189989999836559--------997------9999999985899859999437978--99999997699
Q gi|254780312|r 34 NGASAYDKVREEPFSLLLTDIVMPE--------MDG------IELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKN 97 (122)
Q Consensus 34 ~g~~al~~~~~~~~dlii~D~~mP~--------~dG------~el~~~ir~~~~~~pii~~s~~~~~--~~~~~~~~~g~ 97 (122)
|++|+-+++.+++ +.+|+|++-|. ..| .++-..+.+..++.||+++-..+.. .......+.|.
T Consensus 3 s~~el~~~l~~~~-~~~liDVR~~~e~~~~~~hi~ga~~i~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~aa~~L~~~G~ 81 (96)
T cd01444 3 SVDELAELLAAGE-APVLLDVRDPASYAALPDHIPGAIHLDEDSLDDWLGDLDRDRPVVVYCYHGNSSAQLAQALREAGF 81 (96)
T ss_pred CHHHHHHHHHCCC-CCEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 9899999984899-968998988899986208777863123667999889856898189980896689999999998289
Q ss_pred C
Q ss_conf 8
Q gi|254780312|r 98 A 98 (122)
Q Consensus 98 ~ 98 (122)
.
T Consensus 82 ~ 82 (96)
T cd01444 82 T 82 (96)
T ss_pred C
T ss_conf 8
No 428
>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.81 E-value=57 Score=14.83 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=53.1
Q ss_pred CEE--EEECCCH--HHHHHHH---HHHHHCCCEEEEEC-------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
Q ss_conf 669--9975998--9999999---99998898999999-------97999999971899899998365599979999999
Q gi|254780312|r 3 QKI--LLAEDDD--DMRRFLI---KALGKAGYEVVSCN-------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68 (122)
Q Consensus 3 ~rI--LiVDD~~--~~r~~l~---~~L~~~G~~v~~a~-------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i 68 (122)
||| |..+|+- ..+..+. ..++..|+++.... |=..-+..+++..||+|++-.. .-++..++++.
T Consensus 146 kkvail~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Dfs~~l~kik~~~pD~V~~~~~--~~d~~~~~kQ~ 223 (357)
T cd06337 146 KKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRFEPGTDDFSSQINAFKREGVDIVTGFAI--PPDFATFWRQA 223 (357)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHH
T ss_conf 7699998616417899999999999998659889876401798644899999998559999998787--46899999999
Q ss_pred HHHCCCCCEEEEE-CCCCHHHHH
Q ss_conf 9858998599994-379789999
Q gi|254780312|r 69 TELDPDLKVMFIT-GFAAVALNP 90 (122)
Q Consensus 69 r~~~~~~pii~~s-~~~~~~~~~ 90 (122)
++..-..|++.++ +........
T Consensus 224 ~~~G~~~~i~~~~~~~~~~~~~~ 246 (357)
T cd06337 224 AQAGFKPKIVTIAKALLFPEDVE 246 (357)
T ss_pred HHCCCCCCEEEECCCCCCHHHHH
T ss_conf 97599987588614547888999
No 429
>PRK11059 regulatory protein CsrD; Provisional
Probab=25.67 E-value=58 Score=14.81 Aligned_cols=96 Identities=11% Similarity=0.095 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEE--EECCHHHHHHHHHHCCCCEEEEEEECC-CCC----HHHHHHHHHHHCC--CCCEEEE
Q ss_conf 998999999999998898999--999979999999718998999983655-999----7999999998589--9859999
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVV--SCNNGASAYDKVREEPFSLLLTDIVMP-EMD----GIELARRATELDP--DLKVMFI 80 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~--~a~~g~~al~~~~~~~~dlii~D~~mP-~~d----G~el~~~ir~~~~--~~pii~~ 80 (122)
++......+.+.|++.|+++. -+..|-..+..+++-++|.+=+|-..= +++ --.+.+.|-.... ++++ +-
T Consensus 532 ~~~~~~~~~l~~L~~lG~~~aiDdFG~g~sSl~YLk~lpvd~LKID~SfVr~I~~~~enq~~V~sIi~~a~~l~~~V-IA 610 (642)
T PRK11059 532 QHIDRLRPVLRMLRGLGCRLAVDQAGLTVVSTSYIKELNVELIKLHPSLVRNIHQRTENQLFVRSLVGACAGTETQV-FA 610 (642)
T ss_pred HCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEE-EE
T ss_conf 48999999999999769879998999976668999639999999888886371269310799999999998679979-99
Q ss_pred ECCCCHHHHHHHHHCCCCE----EEECCCC
Q ss_conf 4379789999999769986----9976979
Q gi|254780312|r 81 TGFAAVALNPDSNAPKNAK----VLSKPFH 106 (122)
Q Consensus 81 s~~~~~~~~~~~~~~g~~~----~l~KP~~ 106 (122)
.|....+......+.|+++ |+.||..
T Consensus 611 EGVEt~~q~~~L~~lGvd~~QGy~f~~P~P 640 (642)
T PRK11059 611 EGVESREEWQTLQILGVSGGQGDFFASPQP 640 (642)
T ss_pred EECCCHHHHHHHHHCCCCEEECCEECCCCC
T ss_conf 623869999999980998322473178889
No 430
>PRK05884 short chain dehydrogenase; Provisional
Probab=25.66 E-value=58 Score=14.81 Aligned_cols=52 Identities=15% Similarity=0.287 Sum_probs=41.0
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEE
Q ss_conf 699975998999999999998898999999979999999718-9989999836
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIV 55 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~ 55 (122)
||||.--...+-..+.+.|.+.|++|..+..-++.++...++ ..+.+..|..
T Consensus 2 ~VlVTGgs~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~el~~~~~~~d~~ 54 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNT 54 (223)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEEECC
T ss_conf 39998788799999999999879999999598789999985348768998527
No 431
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=25.63 E-value=58 Score=14.81 Aligned_cols=12 Identities=25% Similarity=0.506 Sum_probs=10.3
Q ss_pred CCCEEEEECCCH
Q ss_conf 986699975998
Q gi|254780312|r 1 MNQKILLAEDDD 12 (122)
Q Consensus 1 M~~rILiVDD~~ 12 (122)
|.+|||++|-|+
T Consensus 28 ~GkkVlliDaDp 39 (270)
T cd02040 28 MGKKVMIVGCDP 39 (270)
T ss_pred CCCEEEEECCCC
T ss_conf 799499986579
No 432
>PRK06123 short chain dehydrogenase; Provisional
Probab=25.62 E-value=58 Score=14.80 Aligned_cols=81 Identities=10% Similarity=0.083 Sum_probs=49.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEE-CCH----HHHHHHHHHCCCCEEEEEEECCCCCHHH-HHHHHHHHCCC
Q ss_conf 98669997599899999999999889899999-997----9999999718998999983655999799-99999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNG----ASAYDKVREEPFSLLLTDIVMPEMDGIE-LARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a-~~g----~~al~~~~~~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~ 74 (122)
|+|-+||---...+-..+++.|.+.|+.|... .+- ++..+.+++....++..-..+-+.+..+ +.+.+.+....
T Consensus 2 ~nKvalITGas~GIG~aia~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 81 (249)
T PRK06123 2 MRKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 81 (249)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf 99889996868799999999999879989998089878999999999964990999984799999999999999998299
Q ss_pred CCEEEEE
Q ss_conf 8599994
Q gi|254780312|r 75 LKVMFIT 81 (122)
Q Consensus 75 ~pii~~s 81 (122)
+-+++-.
T Consensus 82 iDiLVnN 88 (249)
T PRK06123 82 LDALVNN 88 (249)
T ss_pred CCEEEEC
T ss_conf 8789988
No 433
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=25.61 E-value=58 Score=14.80 Aligned_cols=97 Identities=11% Similarity=0.057 Sum_probs=59.3
Q ss_pred EEEEC---CCHHHHHHHHHHHHHCCCEEEE--E-CCHHHHHHHHHHCCCCEEEEEEECCCCCH-------HHHHHHHHHH
Q ss_conf 99975---9989999999999988989999--9-99799999997189989999836559997-------9999999985
Q gi|254780312|r 5 ILLAE---DDDDMRRFLIKALGKAGYEVVS--C-NNGASAYDKVREEPFSLLLTDIVMPEMDG-------IELARRATEL 71 (122)
Q Consensus 5 ILiVD---D~~~~r~~l~~~L~~~G~~v~~--a-~~g~~al~~~~~~~~dlii~D~~mP~~dG-------~el~~~ir~~ 71 (122)
++|+| |.+.............|..... + .+..+-++.+.+..-..+-+ .+-+..| -++++++|+.
T Consensus 108 vIipDLP~e~~ee~~~~~~~~~~~gl~~I~lvsPtt~~~ri~~i~~~s~gFvY~--~~~gvTG~~~~~~~~~~i~~ik~~ 185 (247)
T PRK13125 108 VLFPDLLIDFPDELEKYVELIRRYGLAPVFFTSPKFPDRLIRRLSKLSPLFIYL--GLYPATGVELPVYVERNIKRVREL 185 (247)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEE--EEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 883388875467899999999976984699957998199999999868977999--944367887732599999999985
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 89985999943797899999997699869976
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~K 103 (122)
.+++|+.+==|.+..+...+..+.++++.+.-
T Consensus 186 ~~~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVG 217 (247)
T PRK13125 186 VGDVYLVAGFAIDSPEDAAKALSAGADGVVVG 217 (247)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 69998588328799999999985589999987
No 434
>PRK08177 short chain dehydrogenase; Provisional
Probab=25.54 E-value=58 Score=14.80 Aligned_cols=54 Identities=13% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEEEE
Q ss_conf 86699975998999999999998898999999979999999718-9989999836
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIV 55 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-~~dlii~D~~ 55 (122)
+|++||.--+..+-..+.+.|.+.|+.|..+..-.+..+.++.. ......+|+.
T Consensus 1 KK~~lITGas~GIG~aia~~l~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~D~~ 55 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIERLDMN 55 (225)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCEEEEECC
T ss_conf 9989992734299999999999886999999798877899872548728998458
No 435
>pfam12588 PSDC Phophatidylserine decarboxylase. This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam02666. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=25.51 E-value=39 Score=15.80 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=39.8
Q ss_pred EECCCHHHHHHHHHHHHHCCCEE-------EEECCHHHHHHHH---HHCCCC-------------EEEEEEECCCCCHHH
Q ss_conf 97599899999999999889899-------9999979999999---718998-------------999983655999799
Q gi|254780312|r 7 LAEDDDDMRRFLIKALGKAGYEV-------VSCNNGASAYDKV---REEPFS-------------LLLTDIVMPEMDGIE 63 (122)
Q Consensus 7 iVDD~~~~r~~l~~~L~~~G~~v-------~~a~~g~~al~~~---~~~~~d-------------lii~D~~mP~~dG~e 63 (122)
+||.|+..+..+..++.+..-.. ....|=.+-+..+ -.+.|. -.|+|+-|.-..|+.
T Consensus 11 lIe~d~~l~ml~~~mf~e~p~~~~~~p~g~~~i~~~~~mL~~ln~i~t~AP~~~~~~~glVG~P~nalldwpM~T~sG~a 90 (140)
T pfam12588 11 LIESDPRLYMLFTQMFDEVPPPYDTDPSGQPQIRDYDELLQLLNHILTTAPEWNDHPSGLVGFPINALLDWPMGTPSGYA 90 (140)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHH
T ss_conf 99649899999999999878624789888988688999999999997319997778887403671764203357767899
Q ss_pred HHH
Q ss_conf 999
Q gi|254780312|r 64 LAR 66 (122)
Q Consensus 64 l~~ 66 (122)
+.+
T Consensus 91 ~F~ 93 (140)
T pfam12588 91 AFR 93 (140)
T ss_pred HHH
T ss_conf 981
No 436
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=25.50 E-value=58 Score=14.79 Aligned_cols=69 Identities=17% Similarity=0.212 Sum_probs=46.2
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCC----HHH------HHHHHHHH-CC
Q ss_conf 99975998999999999998898999999979999999718998999983655999----799------99999985-89
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD----GIE------LARRATEL-DP 73 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~d----G~e------l~~~ir~~-~~ 73 (122)
|.|+|=-..+...+.+.|+..|+++....+..+- ..+|.+|+ |+.. +.+ +.+.|++. ..
T Consensus 1 I~IiD~G~~ni~si~~~l~~lg~~~~ii~~~~~l------~~~d~iIl----PGvG~f~~~~~~l~~~~~~~~i~~~~~~ 70 (198)
T cd01748 1 IAIIDYGMGNLRSVANALERLGAEVIITSDPEEI------LSADKLIL----PGVGAFGDAMANLRERGLIEALKEAIAS 70 (198)
T ss_pred CEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHH------HHCCEEEE----CCCCCCHHHHHHHHHCCHHHHHHHHHHC
T ss_conf 9999769778999999999879929997999998------30898998----7887403444441003819999999876
Q ss_pred CCCEE-EEECC
Q ss_conf 98599-99437
Q gi|254780312|r 74 DLKVM-FITGF 83 (122)
Q Consensus 74 ~~pii-~~s~~ 83 (122)
..|++ ++-|+
T Consensus 71 ~~PiLGIClG~ 81 (198)
T cd01748 71 GKPFLGICLGM 81 (198)
T ss_pred CCCEEEEEEEE
T ss_conf 99689998114
No 437
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=25.47 E-value=51 Score=15.14 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=9.5
Q ss_pred CHHHHHHHHHHHCCCCCEEEE
Q ss_conf 979999999985899859999
Q gi|254780312|r 60 DGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 60 dG~el~~~ir~~~~~~pii~~ 80 (122)
|.-+.++.+++..|+..+-.+
T Consensus 95 DTG~Tl~~vk~~~~~~~~Atl 115 (156)
T PRK09177 95 DTGGTARAVREMYPKAHFATV 115 (156)
T ss_pred CCCHHHHHHHHHCCCCEEEEE
T ss_conf 663789999986788559999
No 438
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=25.39 E-value=58 Score=14.78 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=37.7
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCHHHHHHHHHCCCC------EEEEC-CCCHHHHHHHHHHHHHCC
Q ss_conf 999999985-899859999437978999999976998------69976-979899999999996036
Q gi|254780312|r 63 ELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNA------KVLSK-PFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 63 el~~~ir~~-~~~~pii~~s~~~~~~~~~~~~~~g~~------~~l~K-P~~~~~L~~~i~~~l~~~ 121 (122)
++++++++. .+++|||-+.|...-+.+.+.+..|++ .++.+ |.-..++.+.+.+.|..+
T Consensus 229 ~~v~~l~~~~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~~~ 295 (310)
T COG0167 229 RVVAELYKRLGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLEEK 295 (310)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCHHEEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 9999999842899748984686969999999982975640411210208509999999999999981
No 439
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=25.27 E-value=59 Score=14.76 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=47.7
Q ss_pred EEEECCCHHHHHHHHHHHHH-CCCEEEEE-CCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH-HHHCCCCCEEEEE
Q ss_conf 99975998999999999998-89899999-997999999971899899998365599979999999-9858998599994
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGK-AGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA-TELDPDLKVMFIT 81 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~-~G~~v~~a-~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~i-r~~~~~~pii~~s 81 (122)
|.+|-=-..-+..+..+... .++++... +.-.+..+.+.+. |++- ..+. .+++ +...++.-+|...
T Consensus 3 i~iiG~G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~-~~~~-------~~~~---~~~~l~~~~iD~v~I~tp 71 (120)
T pfam01408 3 VGIVGAGKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAES-FGVP-------AYSD---LEELLADPDVDAVSVATP 71 (120)
T ss_pred EEEEECHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH-HCCC-------EECC---HHHHHHCCCCCEEEECCC
T ss_conf 9999077999999999985599978999982999999999998-3996-------7886---999973778898999087
Q ss_pred CCCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHH
Q ss_conf 379789999999769986997697--9899999999
Q gi|254780312|r 82 GFAAVALNPDSNAPKNAKVLSKPF--HLRDLVNEVN 115 (122)
Q Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~--~~~~L~~~i~ 115 (122)
.....+....+.+.|..-|+.||+ +.++..+-++
T Consensus 72 ~~~H~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~ 107 (120)
T pfam01408 72 PGLHFELALAALEAGKHVLVEKPLATTVEEAKELVE 107 (120)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHH
T ss_conf 461899999999819989996898199999999999
No 440
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.96 E-value=59 Score=14.73 Aligned_cols=76 Identities=25% Similarity=0.362 Sum_probs=36.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECC---HHHHHHHHHHCC-CCEEEEEEECCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 66999759989999999999988989999999---799999997189-98999983655999799999999858998599
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNN---GASAYDKVREEP-FSLLLTDIVMPEMDGIELARRATELDPDLKVM 78 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~---g~~al~~~~~~~-~dlii~D~~mP~~dG~el~~~ir~~~~~~pii 78 (122)
||++|.-+-...... ...+++.|++|..+.. -.+-++.+.... .+.+++| +.|-+|+.+.+++..|+ +
T Consensus 301 Krv~i~~Gg~~~~~~-i~~~~eLGmevV~~g~~~~~~~Dye~~~~~~~~~~~iid----d~~~~Ele~~i~~~~pD---l 372 (421)
T cd01976 301 KTVMLYVGGLRPRHY-IGAYEDLGMEVVGTGYEFAHRDDYERTEVIPKEGTLLYD----DVTHYELEEFVKRLKPD---L 372 (421)
T ss_pred CEEEEECCCCCHHHH-HHHHHHCCCEEEEEEEECCCHHHHHHHHHHCCCCCEEEE----CCCHHHHHHHHHHCCCC---E
T ss_conf 889998998746899-999998798899973122747679999850898828972----79999999999853999---9
Q ss_pred EEECCCCH
Q ss_conf 99437978
Q gi|254780312|r 79 FITGFAAV 86 (122)
Q Consensus 79 ~~s~~~~~ 86 (122)
+++|.-+.
T Consensus 373 ~l~g~ker 380 (421)
T cd01976 373 IGSGIKEK 380 (421)
T ss_pred EEECCCCC
T ss_conf 99547620
No 441
>TIGR00089 TIGR00089 RNA modification enzyme, MiaB family; InterPro: IPR005839 This entry represents a family defined on the basis of sequence similarity. Most of these proteins are not yet characterised, but those that are include CDK5 regulatory subunit-associated protein 1, which specifically inhibits CDK5 activation by CDK5R1 . MiaB, a tRNA modification enzyme . The size of proteins in this entry ranges from 47 to 61 kDa and they contain six conserved cysteines, three of which are clustered. .
Probab=24.56 E-value=60 Score=14.68 Aligned_cols=98 Identities=12% Similarity=0.161 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHH-CCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC----CCCCHHHHHHHHHHHCCC---CCEEEEEC
Q ss_conf 98999999999998-89899999997999999971899899998365----599979999999985899---85999943
Q gi|254780312|r 11 DDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVM----PEMDGIELARRATELDPD---LKVMFITG 82 (122)
Q Consensus 11 ~~~~r~~l~~~L~~-~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m----P~~dG~el~~~ir~~~~~---~pii~~s~ 82 (122)
|..--+.++..|.. .||++. .+.++| |+||+.--= ++--.+.-+.++++..++ ..+|+++|
T Consensus 12 N~~Dse~m~~~L~~~~G~~~~--~~~~~A---------Dv~i~NTC~vr~~ae~k~~~~l~~~~~~k~~~~~d~~i~V~G 80 (455)
T TIGR00089 12 NEADSEIMAGLLKEAAGYEVT--DDPEEA---------DVIIINTCAVREKAEQKVRSELGELAKLKKKNPDDAKIVVAG 80 (455)
T ss_pred CHHHHHHHHHHHHHHCCEEEC--CCCCCC---------CEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 578899999988874471433--886644---------579985345651578999999999998277788885899846
Q ss_pred CCCHHHHHH-HHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 797899999-9976998699769798999999999960
Q gi|254780312|r 83 FAAVALNPD-SNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 83 ~~~~~~~~~-~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
.-.+....+ ..+..-.+++.-|.+.+.+.+.|+++.+
T Consensus 81 C~aq~~~~~l~~~~p~~d~~~G~~~~~~~~~~i~~~~~ 118 (455)
T TIGR00089 81 CLAQREGEELLKRIPEVDIVLGTQDVERIPELINSAEE 118 (455)
T ss_pred CCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf 44323878999645856999843137889999999863
No 442
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.54 E-value=61 Score=14.68 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=41.6
Q ss_pred HHHHHHHHHCC-CCEEEEEEECC-CCCHH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HCCCCEEE
Q ss_conf 99999997189-98999983655-99979--9999999858998599994379789999999-76998699
Q gi|254780312|r 36 ASAYDKVREEP-FSLLLTDIVMP-EMDGI--ELARRATELDPDLKVMFITGFAAVALNPDSN-APKNAKVL 101 (122)
Q Consensus 36 ~~al~~~~~~~-~dlii~D~~mP-~~dG~--el~~~ir~~~~~~pii~~s~~~~~~~~~~~~-~~g~~~~l 101 (122)
.+.+..+.+.. -.++++|+.-- -+.|+ ++++.+++. .++|+|.--|.+..+.-.++. ..|+++.+
T Consensus 155 ~~~~~~~~~~g~geil~TdI~rDGt~~G~d~~l~~~i~~~-~~ipiIasGGi~s~~di~~l~~~~~v~gv~ 224 (253)
T PRK01033 155 VEFAKQAEELGAGEIVLNSIDRDGVMKGYDLELIKKISSA-VKIPVTALGGAGSLDDIADLIQEAGASAAA 224 (253)
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHHCCCEEEE
T ss_conf 9999998746977999987848897668799999999987-899999978989999999999867973997
No 443
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=24.33 E-value=61 Score=14.66 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=15.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHH
Q ss_conf 6699975998999999999998
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGK 24 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~ 24 (122)
+.|||||-+....+.+...+..
T Consensus 1 ~~vlVVEK~avf~~L~~~~~~~ 22 (160)
T cd00223 1 DFVLVVEKEAVFQRLIEEGFHE 22 (160)
T ss_pred CEEEEEECHHHHHHHHHCCCCC
T ss_conf 9799996499999999748564
No 444
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=24.30 E-value=61 Score=14.65 Aligned_cols=102 Identities=15% Similarity=0.094 Sum_probs=54.9
Q ss_pred CEEEEE-C-CC---HHHHHHHHHHHHHCCCEEEEEC--------CHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
Q ss_conf 669997-5-99---8999999999998898999999--------979999999718998999983655999799999999
Q gi|254780312|r 3 QKILLA-E-DD---DDMRRFLIKALGKAGYEVVSCN--------NGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 3 ~rILiV-D-D~---~~~r~~l~~~L~~~G~~v~~a~--------~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir 69 (122)
+|+-|+ + |+ ......+...+.+.|-.+.... +....+..+++..+|+|++-. ...++-.++++++
T Consensus 135 k~vai~~~~~~~yg~~~~~~f~~~~~~~gg~~v~~~~~~~~~d~d~~~~l~~i~~~~~d~i~~~~--~~~~~~~~~~~~~ 212 (332)
T cd06344 135 KKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPCDLSSPDFNANTAVSQAINNGATVLVLFP--DTDTLDKALEVAK 212 (332)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECC--CHHHHHHHHHHHH
T ss_conf 88999994786477899999999999829959999871698997999999998637998999908--6788999999999
Q ss_pred HHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8589985999943797899999997699869976979
Q gi|254780312|r 70 ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 70 ~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
+.....|++--.+.........+...-...++.-|+.
T Consensus 213 ~~g~~~~l~g~~~~~~~~~~~~~~~~~~g~~~~~~~~ 249 (332)
T cd06344 213 ANKGRLTLLGGDSLYTPDTLLDGGKDLEGLVLAVPWH 249 (332)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHCCEEEEEECC
T ss_conf 7699955994586568899997678747859975058
No 445
>KOG4175 consensus
Probab=24.29 E-value=61 Score=14.65 Aligned_cols=76 Identities=8% Similarity=0.110 Sum_probs=46.1
Q ss_pred HHHHHHHHHCCCCEEEEEEEC--CCCCHHHH-----------------HHHHHHHCC---CCCEEEEECC------CCHH
Q ss_conf 999999971899899998365--59997999-----------------999998589---9859999437------9789
Q gi|254780312|r 36 ASAYDKVREEPFSLLLTDIVM--PEMDGIEL-----------------ARRATELDP---DLKVMFITGF------AAVA 87 (122)
Q Consensus 36 ~~al~~~~~~~~dlii~D~~m--P~~dG~el-----------------~~~ir~~~~---~~pii~~s~~------~~~~ 87 (122)
..++.-+++.--|+|=+.+-. |-.||-.. ++.+++..| .+|||++.-| +...
T Consensus 35 ~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~ 114 (268)
T KOG4175 35 AKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN 114 (268)
T ss_pred HHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHH
T ss_conf 99998875279674886685676456773455667899872896899999999850468630266220144887640789
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 999999769986997697989999
Q gi|254780312|r 88 LNPDSNAPKNAKVLSKPFHLRDLV 111 (122)
Q Consensus 88 ~~~~~~~~g~~~~l~KP~~~~~L~ 111 (122)
....+...|+.+||.--..+++-.
T Consensus 115 ~iq~ak~aGanGfiivDlPpEEa~ 138 (268)
T KOG4175 115 YIQVAKNAGANGFIIVDLPPEEAE 138 (268)
T ss_pred HHHHHHHCCCCCEEECCCCHHHHH
T ss_conf 999999658774585068868989
No 446
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=24.23 E-value=61 Score=14.65 Aligned_cols=46 Identities=26% Similarity=0.246 Sum_probs=30.1
Q ss_pred CHHHHHHHHHHHHHCCCEEEE---ECCHHHHH-HHHHH--CCCCEEEEEEEC
Q ss_conf 989999999999988989999---99979999-99971--899899998365
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS---CNNGASAY-DKVRE--EPFSLLLTDIVM 56 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~---a~~g~~al-~~~~~--~~~dlii~D~~m 56 (122)
...+...+...|+++|+++.. +.|-.+.+ +.+++ ..+|+|++-=..
T Consensus 16 ~d~n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~~~~~~DlIittGG~ 67 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGT 67 (135)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCC
T ss_conf 3258999999999889989998798999999999999984148999982887
No 447
>KOG3035 consensus
Probab=24.06 E-value=62 Score=14.63 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=53.0
Q ss_pred CHHHHHHHHHH-------CCCCEEEE-----EEECCCCCH-------HHHHHHHHH-------HCCCCCEEEEECCCCHH
Q ss_conf 97999999971-------89989999-----836559997-------999999998-------58998599994379789
Q gi|254780312|r 34 NGASAYDKVRE-------EPFSLLLT-----DIVMPEMDG-------IELARRATE-------LDPDLKVMFITGFAAVA 87 (122)
Q Consensus 34 ~g~~al~~~~~-------~~~dlii~-----D~~mP~~dG-------~el~~~ir~-------~~~~~pii~~s~~~~~~ 87 (122)
|..-|+..+.+ .+|-++++ |..+|+-+| -|....+|+ ..|.+.||++|.-.-.+
T Consensus 49 nSRwALkvL~~ifp~~~s~~p~lvtVffGaNDs~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de 128 (245)
T KOG3035 49 NSRWALKVLPEIFPKGSSIQPVLVTVFFGANDSCLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDE 128 (245)
T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCH
T ss_conf 06789987433365645678637999955763137888888885577999999999999754059762289946997688
Q ss_pred HHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 9999997699869976979899999999996
Q gi|254780312|r 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118 (122)
Q Consensus 88 ~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l 118 (122)
.. ..+.....|+.-|++.+++...-++++
T Consensus 129 ~~--~~~~~~e~~~~~~~RtNe~~~~Ya~ac 157 (245)
T KOG3035 129 EA--WEKQEQEPYVLGPERTNETVGTYAKAC 157 (245)
T ss_pred HH--HHHHHCCCHHCCCHHHHHHHHHHHHHH
T ss_conf 99--988742341125313456889999999
No 448
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=24.00 E-value=62 Score=14.62 Aligned_cols=91 Identities=18% Similarity=0.225 Sum_probs=65.7
Q ss_pred EEEEECCCHHHHHHHHHHHHH-CCCE--------EEEECCHHHHHHHHHHC--CCCEEEEEEECCCCCHHH--HHHHHHH
Q ss_conf 699975998999999999998-8989--------99999979999999718--998999983655999799--9999998
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGK-AGYE--------VVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIE--LARRATE 70 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~-~G~~--------v~~a~~g~~al~~~~~~--~~dlii~D~~mP~~dG~e--l~~~ir~ 70 (122)
.|++==||=+....-+.-|++ .|++ ...|..|.-|+|+++|. +.|.|++-+. -.|+- ++.-||+
T Consensus 115 eVvLhG~~y~~A~~~A~eL~q~~GlTfi~PFDdPlVIAGQGT~alEil~Q~~~~~davFVpvG---GGGLiAGVA~~~K~ 191 (508)
T TIGR01124 115 EVVLHGDNYDDAKDHAIELAQEKGLTFIHPFDDPLVIAGQGTVALEILRQVAEDLDAVFVPVG---GGGLIAGVAALVKQ 191 (508)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCCEECCCHHHHHHHHHCCCCCCCEEEEECC---CCHHHHHHHHHHHH
T ss_conf 799737985799999999997368865278888640325106668765057684768887117---73689999999972
Q ss_pred HCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 5899859999437978999999976998
Q gi|254780312|r 71 LDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 71 ~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
..|+++||-+-.. |.....++.+.|--
T Consensus 192 l~P~IkvIGVEp~-DS~am~~sL~AG~~ 218 (508)
T TIGR01124 192 LMPEIKVIGVEPT-DSDAMKQSLEAGER 218 (508)
T ss_pred CCCCEEEEEECCC-HHHHHHHHHHCCCC
T ss_conf 2896189974786-59999999856881
No 449
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=23.87 E-value=62 Score=14.60 Aligned_cols=63 Identities=16% Similarity=0.132 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99999999999889899999997------999999971899899998365599979999999985899859999
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFI 80 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~ 80 (122)
.+.+.+...+++.||.+..+.+. .++++.+.+..+|-+|+- |...--+..+.+++ ..+|++.+
T Consensus 16 ~l~~gi~~~~~~~gy~~~i~~s~~d~~~e~~~i~~l~~~~vDGiIi~---~~~~~~~~~~~l~~--~~iPvV~~ 84 (268)
T cd01575 16 DVLQGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILT---GLEHTERTRQLLRA--AGIPVVEI 84 (268)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE---CCCCCHHHHHHHHH--CCCCEEEE
T ss_conf 99999999999869999999789998999999999995699999994---37799899999997--79969984
No 450
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=23.84 E-value=62 Score=14.60 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=45.9
Q ss_pred EECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHH
Q ss_conf 36559997999999998589985999943797899999997699869-9769798999999999
Q gi|254780312|r 54 IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV-LSKPFHLRDLVNEVNR 116 (122)
Q Consensus 54 ~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~-l~KP~~~~~L~~~i~~ 116 (122)
-.-|.-+-.++.+.+|++ .+..+++||-.+.....-|.+.|.+.| =.+|=++.+..+.+++
T Consensus 369 ~D~lkp~a~~~i~~Lk~~--Gi~~~mLtGDN~~~A~a~A~~lGI~v~Aev~P~~K~a~ik~lq~ 430 (545)
T TIGR01511 369 ADQLKPEAKEVIQALKRR--GIEPVMLTGDNRKTAKAVAKELGINVRAEVLPDDKAALIKELQE 430 (545)
T ss_pred CCCCCHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHC
T ss_conf 474688689999999875--98799986698799999999728333317880768999999853
No 451
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=23.68 E-value=63 Score=14.58 Aligned_cols=27 Identities=4% Similarity=-0.123 Sum_probs=15.8
Q ss_pred CCCCEEEEECCCCH----HHHHHHHHCCCCE
Q ss_conf 99859999437978----9999999769986
Q gi|254780312|r 73 PDLKVMFITGFAAV----ALNPDSNAPKNAK 99 (122)
Q Consensus 73 ~~~pii~~s~~~~~----~~~~~~~~~g~~~ 99 (122)
++.|||++-..+.. .......+.|...
T Consensus 49 kd~~Ivvyc~~g~~~~s~~Aa~~L~~~Gy~~ 79 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTD 79 (92)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 9982999969999629999999999869968
No 452
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.65 E-value=63 Score=14.58 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC----CCCCHHHHHHHHHHHCCCCCEEEEECCCCH
Q ss_conf 9899999999999889899999997999999971899899998365----599979999999985899859999437978
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM----PEMDGIELARRATELDPDLKVMFITGFAAV 86 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m----P~~dG~el~~~ir~~~~~~pii~~s~~~~~ 86 (122)
|..--+.+...|...||. ..++++.+| |++|+.--= ...--+..+.++++..|+. .|++||.-.+
T Consensus 15 N~~DSe~m~~~L~~~G~~-~~~~~~~eA---------DvviiNTC~V~~~a~~k~~~~i~~~~~~~p~~-~iiVtGC~aq 83 (437)
T COG0621 15 NLYDSERMAGLLEAAGYE-ELVEDPEEA---------DVVIINTCAVREKAEQKVRSAIGELKKLKPDA-KIIVTGCLAQ 83 (437)
T ss_pred CHHHHHHHHHHHHHCCCC-CCCCCCCCC---------CEEEEECCEEEEHHHHHHHHHHHHHHHHCCCC-EEEEECCCCC
T ss_conf 277899999999876885-346985568---------88999667655359999999999999729997-8999687123
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 999999976998699769798999999999960
Q gi|254780312|r 87 ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 87 ~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
..........-.+++.=|-+.+.+.+.|++.+.
T Consensus 84 ~~~~i~~~~p~vd~v~G~~~~~~~~~~i~~~~~ 116 (437)
T COG0621 84 AEEEILERAPEVDIVLGPQNKERLPEAIEKALR 116 (437)
T ss_pred CCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 578889508886099787347778999999861
No 453
>pfam06925 MGDG_synth Monogalactosyldiacylglycerol (MGDG) synthase. This family represents a conserved region of approximately 180 residues within plant and bacterial monogalactosyldiacylglycerol (MGDG) synthase (EC:2.4.1.46). In Arabidopsis, there are two types of MGDG synthase which differ in their N-terminal portion: type A and type B.
Probab=23.58 E-value=63 Score=14.57 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=33.7
Q ss_pred HHHHHHCCCCEEEEEEECCCCCHHHH-HHHHHHHC--CCCCEE-EEECCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 99997189989999836559997999-99999858--998599-9943797899999997699869976
Q gi|254780312|r 39 YDKVREEPFSLLLTDIVMPEMDGIEL-ARRATELD--PDLKVM-FITGFAAVALNPDSNAPKNAKVLSK 103 (122)
Q Consensus 39 l~~~~~~~~dlii~D~~mP~~dG~el-~~~ir~~~--~~~pii-~~s~~~~~~~~~~~~~~g~~~~l~K 103 (122)
.+.+++.+||+|++=.-+|. ++ +..+|+.. +++|++ ++|-+.. ........+++.|++-
T Consensus 82 ~~~i~~~~PD~IV~Thp~~~----~~~l~~lk~~~~~~~~p~~tViTD~~~--~H~~W~~~~~D~y~Va 144 (169)
T pfam06925 82 AALLKEFQPDIIISTHPLPA----AVPLSVLKSKGLLKRVLVVTVVTDFRT--CHPFWLHPEIDRYYVP 144 (169)
T ss_pred HHHHHHHCCCEEEECCHHHH----HHHHHHHHHCCCCCCCCEEEEECCCCC--CCCCCCCCCCCEEEEC
T ss_conf 99999849399999976266----789999998387889978999898866--6578168999989979
No 454
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=23.27 E-value=64 Score=14.53 Aligned_cols=79 Identities=14% Similarity=0.159 Sum_probs=54.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCC--CEEEEEEECCCCCHHH-HHHHHHHHCCCCCEEE
Q ss_conf 669997599899999999999889899999997999999971899--8999983655999799-9999998589985999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPEMDGIE-LARRATELDPDLKVMF 79 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~--dlii~D~~mP~~dG~e-l~~~ir~~~~~~pii~ 79 (122)
|-+||---...+-+.+.+.|.+.|++|..+.-.++.|+.+..+-. .+....+..-+.+..+ +++.+.+....+-+++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiLv 86 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDILV 86 (246)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 68999468656889999999978996999863688999999862567437896136788999999999997517605899
Q ss_pred EE
Q ss_conf 94
Q gi|254780312|r 80 IT 81 (122)
Q Consensus 80 ~s 81 (122)
-.
T Consensus 87 NN 88 (246)
T COG4221 87 NN 88 (246)
T ss_pred EC
T ss_conf 66
No 455
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase; InterPro: IPR006240 Sulphate is incorporated into 3-phosphoadenylylsulphate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulphate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. These sequences describe a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle..
Probab=23.19 E-value=51 Score=15.15 Aligned_cols=40 Identities=15% Similarity=0.231 Sum_probs=20.2
Q ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 9999998589985999943797899999997699869976979
Q gi|254780312|r 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106 (122)
Q Consensus 64 l~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~ 106 (122)
+++++|+..|++||+ | =.+...-..-.+.+-..||+=|++
T Consensus 48 i~e~L~~l~P~IPvl--S-EE~~~~~~~~r~~W~rfwLvDPLD 87 (263)
T TIGR01331 48 ILEGLRALTPDIPVL--S-EEEAEIGLTERQTWQRFWLVDPLD 87 (263)
T ss_pred HHHHHHHHCCCCCEE--C-CCCCCCCCCCCCCCCCEEEECCCC
T ss_conf 754566417888676--1-368797686132586036642852
No 456
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.18 E-value=64 Score=14.52 Aligned_cols=70 Identities=16% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCCCEEEEEEECC-CCCH--HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE------CCCCHHHHHHHHH
Q ss_conf 8998999983655-9997--99999999858998599994379789999999769986997------6979899999999
Q gi|254780312|r 45 EPFSLLLTDIVMP-EMDG--IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS------KPFHLRDLVNEVN 115 (122)
Q Consensus 45 ~~~dlii~D~~mP-~~dG--~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~------KP~~~~~L~~~i~ 115 (122)
..-.++++|+.-- -+.| +++++.+++ ...+|+|..-|.+..+...++.+.|+.+.+. .-++..++.+.+.
T Consensus 165 G~geil~tdI~rDGt~~G~d~~l~~~i~~-~~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~~~~~s~~e~k~~L~ 243 (252)
T PRK13597 165 GAGEILLTSMDRDGTKEGYDLRLTRMVAE-AVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPELKRYLA 243 (252)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHH-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHHCCCCCHHHHHHHHH
T ss_conf 89999997573768444769599999985-07998999789899999999987899699871276779999999999999
No 457
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.05 E-value=65 Score=14.51 Aligned_cols=79 Identities=9% Similarity=0.008 Sum_probs=46.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHH-HHHHHHHHHCCCCCEEEE
Q ss_conf 8669997599899999999999889899999997999999971899899998365599979-999999985899859999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMFI 80 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~-el~~~ir~~~~~~pii~~ 80 (122)
+|.+||---...+-..+...|.+.|++|..+.--++.++...++-......-...-+.+.. ++++++.+....+=+++-
T Consensus 5 gKvvlITGassGIG~a~A~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~DVtd~~~v~~~~~~~~~~~G~iDiLVN 84 (273)
T PRK07825 5 GKVIAITGGARGIGLATARALAALGAKVAIGDLDEALAKESAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLVN 84 (273)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 98899926233999999999998799899997999999999986078559991479999999999999997099778998
No 458
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=23.02 E-value=65 Score=14.50 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEE--EECCH--------------HHHHHHHHHC---CCCEEEEEEECCCCCHHHHH
Q ss_conf 99975998999999999998898999--99997--------------9999999718---99899998365599979999
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVV--SCNNG--------------ASAYDKVREE---PFSLLLTDIVMPEMDGIELA 65 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~--~a~~g--------------~~al~~~~~~---~~dlii~D~~mP~~dG~el~ 65 (122)
=+||||....-..++.+|++.|.... .+.+. -.||.+++++ .-+-|+.=..--+.=-+++.
T Consensus 34 WIVVEd~~~~t~~v~~lL~~sgl~y~HL~~~~~~~~~~~~~rg~~qRn~aL~~ir~~~~~~~~GVVyFaDDdNtYsl~lF 113 (223)
T cd00218 34 WIVVEDSEEKTPLVAELLRRSGLMYTHLNAKTPSDPTWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELF 113 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECHHHH
T ss_conf 99996798889899999997499649863488888888775118999999999996676678769997569970048999
Q ss_pred HHHHHHC
Q ss_conf 9999858
Q gi|254780312|r 66 RRATELD 72 (122)
Q Consensus 66 ~~ir~~~ 72 (122)
++||+..
T Consensus 114 ~emR~~k 120 (223)
T cd00218 114 EEMRKIK 120 (223)
T ss_pred HHHHCCE
T ss_conf 8765420
No 459
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=22.97 E-value=65 Score=14.50 Aligned_cols=61 Identities=13% Similarity=0.273 Sum_probs=38.6
Q ss_pred HHHHHHHHHCC-CCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEE-ECCCCHHHHHHHHHCCC
Q ss_conf 99999997189-9899998365599979999999985899859999-43797899999997699
Q gi|254780312|r 36 ASAYDKVREEP-FSLLLTDIVMPEMDGIELARRATELDPDLKVMFI-TGFAAVALNPDSNAPKN 97 (122)
Q Consensus 36 ~~al~~~~~~~-~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~-s~~~~~~~~~~~~~~g~ 97 (122)
.+-++.+.+.+ -++|++ +.=--.||-.|++..|+.....|||++ ||.+.......+...|+
T Consensus 195 ~Dlley~~~D~~T~~I~~-Y~Eg~~DG~~Fl~~A~~~s~~KPiv~lKsG~s~~GakAA~SHTGa 257 (457)
T TIGR02717 195 SDLLEYLADDPDTKVILL-YLEGIKDGRKFLKTAKEISKKKPIVVLKSGTSEAGAKAASSHTGA 257 (457)
T ss_pred HHHHHHHHCCCCCCEEEE-ECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCH
T ss_conf 778889853989408999-717870416899998886305988999368883456765210231
No 460
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.94 E-value=65 Score=14.49 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999998898999999979------999999718998999983655999799999999858998599994
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGA------SAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFIT 81 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~------~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s 81 (122)
.+.+.+...+++.||.+..+.+.. +.++.+.+..+|-+|+ .|..+..+.... .....|++++-
T Consensus 16 ~i~~gi~~~~~~~gy~~ll~~t~~~~~~e~~~l~~l~~~~vdGiI~---~~~~~~~~~~~~---~~~~~P~V~id 84 (263)
T cd06280 16 AVSRAVEDAAYRAGLRVILCNTDEDPEKEAMYLELMEEERVTGVIF---APTRATLRRLAE---LRLSFPVVLID 84 (263)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEE---CCCCCCHHHHHH---HCCCCCEEEEC
T ss_conf 9999999999986998999978999899999999998169879998---788787679999---70899689992
No 461
>pfam04069 OpuAC Substrate binding domain of ABC-type glycine betaine transport system. Part of a high affinity multicomponent binding-protein-dependent transport system involved in bacterial osmoregulation. This domain is often fused to the permease component of the transporter complex. Family members are often integral membrane proteins or predicted to be attached to the membrane by a lipid anchor. Glycine betaine is involved in protection from high osmolarity environments for example in Bacillus subtilis. The family member OpuBC is closely related, and involved in choline transport. Choline is necessary for the biosynthesis of glycine betaine. L-carnitine is important for osmoregulation in Listeria monocytogenes. Family also contains proteins binding l-proline (ProX), histidine (HisX) and taurine (TauA).
Probab=22.94 E-value=65 Score=14.49 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHHCCCEEEEEC--CHHHHHHHHHHCCCCEEEEE
Q ss_conf 998999999999998898999999--97999999971899899998
Q gi|254780312|r 10 DDDDMRRFLIKALGKAGYEVVSCN--NGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 10 D~~~~r~~l~~~L~~~G~~v~~a~--~g~~al~~~~~~~~dlii~D 53 (122)
+......+.+..|+..||.|.... +....+..+.++..|+..-.
T Consensus 12 e~~i~a~i~~~~Le~~G~~V~~~~~~~~~~~~~al~~G~iDi~~~~ 57 (256)
T pfam04069 12 EQEILANIAAQLLEALGYVVELVGLGSTAVLFAALASGDIDLYPEE 57 (256)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCCEEEHH
T ss_conf 8999999999999976981698547870899999976997586333
No 462
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.93 E-value=65 Score=14.49 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=41.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHH
Q ss_conf 699975998999999999998898999999979999999718998999983655999799
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~e 63 (122)
||-|+|=...+...+...|+..|+++....+..+-- ..|.+|+ |+..-|.
T Consensus 2 kI~IiDyG~GNi~Sv~~al~~lg~~~~i~~~~~~i~------~~d~lIL----PGVGsF~ 51 (196)
T PRK13170 2 NVVIIDTGCANLSSVKFAFERLGYNPVVSRDPDVIL------AADKLFL----PGVGTAQ 51 (196)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEECCHHHHH------HCCEEEE----CCCCCHH
T ss_conf 899992795589999999998799799967989984------3897997----1899889
No 463
>TIGR00417 speE spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (), spermine synthase () and putrescine N-methyltransferase () . The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain . The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) . ; GO: 0003824 catalytic activity.
Probab=22.90 E-value=65 Score=14.49 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=57.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCC-CE-----EE-EECCHHHHHHHH----HHCCCCEEEEEEECCCCCHHHH-----HH
Q ss_conf 669997599899999999999889-89-----99-999979999999----7189989999836559997999-----99
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAG-YE-----VV-SCNNGASAYDKV----REEPFSLLLTDIVMPEMDGIEL-----AR 66 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G-~~-----v~-~a~~g~~al~~~----~~~~~dlii~D~~mP~~dG~el-----~~ 66 (122)
+++-+||=|..+-++-+++|-... .. |. ...||-+-++-. -++.||+||+|-.=|.--+-.| .+
T Consensus 100 E~~~lVdID~~VI~~srkyLP~~~~g~~dderv~~~i~DG~~fl~~~Gasdv~~~fDVIIvDstDPvGPa~~LF~~~Fy~ 179 (284)
T TIGR00417 100 EKATLVDIDEKVIELSRKYLPKLAAGSFDDERVDLAIDDGFKFLRDTGASDVEKKFDVIIVDSTDPVGPAETLFTKEFYE 179 (284)
T ss_pred CEEEEEECCHHHHHHHHHHCHHHHCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 67999972747899988826121056658880358982517989761522221214479972778956554102179999
Q ss_pred HHHHHCCCCCEEEE
Q ss_conf 99985899859999
Q gi|254780312|r 67 RATELDPDLKVMFI 80 (122)
Q Consensus 67 ~ir~~~~~~pii~~ 80 (122)
-+++.-.+--|++.
T Consensus 180 ~~~~aL~~~Gv~v~ 193 (284)
T TIGR00417 180 LLKKALNEDGVIVA 193 (284)
T ss_pred HHHHHCCCCCEEEE
T ss_conf 99985299988998
No 464
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.89 E-value=65 Score=14.49 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=44.9
Q ss_pred CCCCEEEEE-EECCCCCHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC
Q ss_conf 899899998-36559997999-999998589985999943797899999997699869976979899999999996036
Q gi|254780312|r 45 EPFSLLLTD-IVMPEMDGIEL-ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121 (122)
Q Consensus 45 ~~~dlii~D-~~mP~~dG~el-~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~ 121 (122)
.+|-+.|+| +-|=...+|.. ++.+-+--+++.+|+.| ++..-...-....+-.|-.|+++.+++.+.+.++++..
T Consensus 118 ~r~KvyiiDEvHmls~~afnalLKtlEepP~hv~FilaT--Td~~k~p~tilSRc~~f~l~~~~~~~i~~~l~~i~~~E 194 (816)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILAT--TDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE 194 (816)
T ss_pred CCEEEEEEECHHHCCHHHHHHHHHHHCCCCCCEEEEEEC--CCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 744799984154339999999998403798664899955--88011528898777652236799999999999999982
No 465
>TIGR02168 SMC_prok_B chromosome segregation protein SMC; InterPro: IPR011890 The SMC (structural maintenance of chromosomes) family of proteins, exist in virtually all organisms including both bacteria and archaea. The SMC proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms and form three types of heterodimer (SMC1SMC3, SMC2SMC4, SMC5SMC6), which are core components of large multiprotein complexes. The best known complexes are cohesin, which is responsible for sister-chromatid cohesion, and condensin, which is required for full chromosome condensation in mitosis. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and share a five-domain structure, with globular N- and C-terminal (IPR003395 from INTERPRO) domains separated by a long (circa 100 nm or 900 residues) coiled coil segment in the centre of which is a globular ''hinge'' domain, characterised by a set of four highly conserved glycine residues that are typical of flexible regions in a protein. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif (XXXXD, where X is any hydrophobic residue), and a LSGG motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases . All SMC proteins appear to form dimers, either forming homodimers with themselves, as in the case of prokaryotic SMC proteins, or heterodimers between different but related SMC proteins. The dimers are arranged in an antiparallel alignment. This orientation brings the N- and C-terminal globular domains (from either different or identical protamers) together, which unites an ATP binding site (Walker A motif) within the N-terminal domain with a Walker B motif (DA box) within the C-terminal domain, to form a potentially functional ATPase. Protein interaction and microscopy data suggest that SMC dimers form a ring-like structure which might embrace DNA molecules. Non-SMC subunits associate with the SMC amino- and carboxy-terminal domains. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. SMCs share not only sequence similarity but also structural similarity with ABC proteins. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression . The smc gene is often associated with scpB (IPR005234 from INTERPRO) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle , , .; GO: 0005515 protein binding, 0005524 ATP binding, 0005694 chromosome.
Probab=22.83 E-value=65 Score=14.48 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=49.1
Q ss_pred EEEECCHHHHHHHH-------HHCCCCEEEE---EEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 99999979999999-------7189989999---8365599979999999985899859999437978999999976998
Q gi|254780312|r 29 VVSCNNGASAYDKV-------REEPFSLLLT---DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 29 v~~a~~g~~al~~~-------~~~~~dlii~---D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
+..-+.|+.||.++ +-.|.-++|+ |.-|=+.|=.-|+..+|+....+.+|++| |...-+...-.-+|++
T Consensus 1099 l~LLSGGEKALTA~ALlFAIf~~~P~PFC~LDEVDAPLDdaNV~RF~~ll~~~~~~tQFI~iT-Hnk~TM~~AD~L~GVT 1177 (1191)
T TIGR02168 1099 LSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEMSKKTQFIVIT-HNKGTMEVADQLYGVT 1177 (1191)
T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCHHHHHHHHHHCCEE
T ss_conf 430201579999999999996007887263212336798266999999999985189278886-7848999862033621
No 466
>pfam07364 DUF1485 Protein of unknown function (DUF1485). This family consists of several hypothetical bacterial proteins of around 300 residues in length. Members of this family all appear to be in the Phylum Proteobacteria. The function of this family is unknown.
Probab=22.80 E-value=65 Score=14.48 Aligned_cols=98 Identities=22% Similarity=0.364 Sum_probs=57.8
Q ss_pred HHHHHHCCCEEEEE------CCH---HHHHHHHH--------H-CCCCEEEEEE-------ECCCCCHHHHHHHHHHH-C
Q ss_conf 99999889899999------997---99999997--------1-8998999983-------65599979999999985-8
Q gi|254780312|r 19 IKALGKAGYEVVSC------NNG---ASAYDKVR--------E-EPFSLLLTDI-------VMPEMDGIELARRATEL-D 72 (122)
Q Consensus 19 ~~~L~~~G~~v~~a------~~g---~~al~~~~--------~-~~~dlii~D~-------~mP~~dG~el~~~ir~~-~ 72 (122)
-+.++..|+++... .+| .++++.+. + .++|.|++++ ..++.+| ++++++|+. .
T Consensus 51 i~~a~~~g~e~vp~~~a~A~P~G~v~~~afe~l~~~il~~l~~~~p~DgV~L~LHGAmv~e~~~D~EG-~ll~riR~~vG 129 (292)
T pfam07364 51 IDVAEAAGWELVPGLAARAEPSGPVTRAAYERLRDEILDRLKAAGPLDAVLLDLHGAMVAEGYDDGEG-DLLARVRAIVG 129 (292)
T ss_pred HHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCH-HHHHHHHHHCC
T ss_conf 99999879789841100457897347999999999999999864998899991647651068888548-99999997528
Q ss_pred CCCCEEEEEC-CCCHHHHHHHHHCCCCEEEECC-CCHHHHHHHHHHH
Q ss_conf 9985999943-7978999999976998699769-7989999999999
Q gi|254780312|r 73 PDLKVMFITG-FAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRL 117 (122)
Q Consensus 73 ~~~pii~~s~-~~~~~~~~~~~~~g~~~~l~KP-~~~~~L~~~i~~~ 117 (122)
|++||.+.-- |.+....--........|-+-| ++..+=..+..++
T Consensus 130 p~vPI~~tlDlHaNvs~~mv~~ad~l~~yrtyPHiD~~etg~raa~l 176 (292)
T pfam07364 130 PDVPIGVSLDLHANLTERMVDAADVLVAYRTYPHVDMAETGERAARL 176 (292)
T ss_pred CCCEEEEEECCCCCCCHHHHHHCCEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 89818997254458689999738663200449972999999999999
No 467
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=22.75 E-value=66 Score=14.47 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=60.5
Q ss_pred CEEEEEC-CCH---HHHHHHHHHHHHCCCEEEE-------ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 6699975-998---9999999999988989999-------9997999999971899899998365599979999999985
Q gi|254780312|r 3 QKILLAE-DDD---DMRRFLIKALGKAGYEVVS-------CNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATEL 71 (122)
Q Consensus 3 ~rILiVD-D~~---~~r~~l~~~L~~~G~~v~~-------a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~ 71 (122)
+||-++- |+. .....+...++..|.++.. ..|-...+..+++..+|+|++-. ..-++..++++.++.
T Consensus 145 k~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dfs~~l~~i~~~~pD~v~~~~--~~~~~~~~~kq~~~~ 222 (347)
T cd06340 145 KTVALVHEDTEFGTSVAEAIKKFAKERGFEIVEDISYPANARDLTSEVLKLKAANPDAILPAS--YTNDAILLVRTMKEQ 222 (347)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEC--CCHHHHHHHHHHHHC
T ss_conf 399999438764577999999999973987999997278877669999999866999999906--762799999999976
Q ss_pred CCCCCEEEEEC--CCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 89985999943--79789999999769986997697
Q gi|254780312|r 72 DPDLKVMFITG--FAAVALNPDSNAPKNAKVLSKPF 105 (122)
Q Consensus 72 ~~~~pii~~s~--~~~~~~~~~~~~~g~~~~l~KP~ 105 (122)
.-..++++..+ ..+.......-.....-+..-|+
T Consensus 223 G~~~~~~~~~~~~~~~~~~~~~~g~~~~gv~~~~~~ 258 (347)
T cd06340 223 RVEPKAVYSVGGGAEDPSFVKALGKDAEGILTRNEW 258 (347)
T ss_pred CCCCCEEEECCCCCCCHHHHHHHHHHHCEEEEEECC
T ss_conf 999765884365545889998777874869996068
No 468
>PRK06196 oxidoreductase; Provisional
Probab=22.72 E-value=66 Score=14.47 Aligned_cols=52 Identities=15% Similarity=0.197 Sum_probs=33.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEC-CHHHHHHHHHH-CCCCEEEEEE
Q ss_conf 6699975998999999999998898999999-97999999971-8998999983
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCN-NGASAYDKVRE-EPFSLLLTDI 54 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~-~g~~al~~~~~-~~~dlii~D~ 54 (122)
|.++|---+..+-...+..|-..|++|..++ |.+.+-+.+.+ ...+++.+|+
T Consensus 27 K~~vITGa~sGIG~~tA~~La~~Ga~Vil~~R~~~k~~~a~~~i~~~~~~~lDL 80 (316)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVVVPARRPDAAREALAGIDGVEVVALDL 80 (316)
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEECCC
T ss_conf 989991799679999999999789989999499999999998741785798368
No 469
>TIGR02102 pullulan_Gpos pullulanase, extracellular; InterPro: IPR011838 Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterised members of this family include a surface-located pullulanase from Streptococcus pneumoniae and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity ..
Probab=22.65 E-value=39 Score=15.81 Aligned_cols=48 Identities=15% Similarity=0.364 Sum_probs=33.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEE-----ECCHHHHHHHHHHCCCCEEEEE
Q ss_conf 9866999759989999999999988989999-----9997999999971899899998
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-----CNNGASAYDKVREEPFSLLLTD 53 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~-----a~~g~~al~~~~~~~~dlii~D 53 (122)
|++|||| ..-..+..-+.--||+-+. |++-+.|+...+.-.|++|.+.
T Consensus 637 MsrR~LV-----DSI~Ylv~efKvDGFRFDMMGDHDA~sI~~Ay~~Ak~iNPN~iMiG 689 (1164)
T TIGR02102 637 MSRRVLV-----DSIKYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAINPNIIMIG 689 (1164)
T ss_pred HHHHHHH-----HHHHHHHHHEEECCEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 2000233-----3345443000005413078763218999999999873189779967
No 470
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=22.64 E-value=66 Score=14.46 Aligned_cols=88 Identities=11% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCCEEEEECCHHHHHHHHH----HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-CCCE
Q ss_conf 8989999999799999997----1899899998365599979999999985899859999437978999999976-9986
Q gi|254780312|r 25 AGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAP-KNAK 99 (122)
Q Consensus 25 ~G~~v~~a~~g~~al~~~~----~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~-g~~~ 99 (122)
.|-++..+.+..+-.+.+. +..+.+..+.-.++..+=-+..++.++ .+..+++.|..... +... +++.
T Consensus 27 ~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~--~~~~ilv~t~~~~~-----Gldl~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIAR-----GIDLPNVSV 99 (131)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHH--HCEEEEEEEECCEE-----CCCCCCCCE
T ss_conf 89909999788999999999995589989999899999999999999775--40104887511200-----366102879
Q ss_pred --EEECCCCHHHHHHHHHHHHH
Q ss_conf --99769798999999999960
Q gi|254780312|r 100 --VLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 100 --~l~KP~~~~~L~~~i~~~l~ 119 (122)
+...|+++..+..++-|+-+
T Consensus 100 vI~~~~~~s~~~~~Q~~GR~~R 121 (131)
T cd00079 100 VINYDLPWSPSSYLQRIGRAGR 121 (131)
T ss_pred EEEECCCCCHHHHHHHHHCCCC
T ss_conf 9997899698999989721670
No 471
>TIGR00888 guaA_Nterm GMP synthase, N-terminal domain; InterPro: IPR004739 The N-terminal region of GMP synthase 6.3.5.2 from EC is recognised by this signature. GMP synthase catalyzes the synthesis of GMP from XMP , . ATP + xanthosine 5'-phosphate + L-glutamine + H(2)O = AMP + diphosphate + GMP + L-glutamate ; GO: 0003922 GMP synthase (glutamine-hydrolyzing) activity, 0005524 ATP binding, 0006177 GMP biosynthetic process.
Probab=22.51 E-value=25 Score=16.94 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=49.8
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-CCCCEEEEEEEC--CCCCHHHHHHHHHHHCCCCCEE-EE
Q ss_conf 9997599899999999999889899999997999999971-899899998365--5999799999999858998599-99
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVM--PEMDGIELARRATELDPDLKVM-FI 80 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-~~~dlii~D~~m--P~~dG~el~~~ir~~~~~~pii-~~ 80 (122)
|||+|-=....+.+++.|++.|...+...+-... +-+++ +|-.+||.-=== -.-|..+..++|-+. ++||+ ++
T Consensus 1 ILvlDFGsQY~hLIaRRlRE~gVysE~~p~t~~~-eeI~~~~P~GiILSGGP~sv~~~n~~~~~~~if~L--gVPvLGIC 77 (195)
T TIGR00888 1 ILVLDFGSQYNHLIARRLRELGVYSEIVPNTTPL-EEIKEKNPKGIILSGGPASVYAENAPEADEKIFEL--GVPVLGIC 77 (195)
T ss_pred CEEEECCCCCEEEEEEEEEECCCEEEEEECCCCH-HHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHC--CCCEEEEE
T ss_conf 9788337651000112201014135784077877-99861298679972788764678850224888627--99688762
Q ss_pred ECC
Q ss_conf 437
Q gi|254780312|r 81 TGF 83 (122)
Q Consensus 81 s~~ 83 (122)
-|+
T Consensus 78 YG~ 80 (195)
T TIGR00888 78 YGM 80 (195)
T ss_pred HHH
T ss_conf 457
No 472
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=22.36 E-value=67 Score=14.42 Aligned_cols=28 Identities=4% Similarity=-0.048 Sum_probs=14.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 9859999437978999999976998699
Q gi|254780312|r 74 DLKVMFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 74 ~~pii~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
.+||.+-.-|++.+...++++.|.+..+
T Consensus 77 ~VPV~lHLDH~~~~~~~~ai~~GftSVM 104 (293)
T PRK07315 77 TVPVAIHLDHGHYEDALECIEVGYTSIM 104 (293)
T ss_pred CCCEEEECCCCCCHHHHHHHHCCCCEEE
T ss_conf 9888988899982899999982998799
No 473
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=22.33 E-value=67 Score=14.42 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.6
Q ss_pred CCCCCHH--HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 5599979--999999985899859999437978999999976998699
Q gi|254780312|r 56 MPEMDGI--ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVL 101 (122)
Q Consensus 56 mP~~dG~--el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l 101 (122)
+|.-.|+ ++.+++|+. ..+|++..-+..+.+..+++++.|..+++
T Consensus 271 ~~~~~~~~~~~a~~ik~~-~~ipvi~~G~i~~p~~ae~~l~~G~~DlV 317 (336)
T cd02932 271 IPVGPGYQVPFAERIRQE-AGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred CCCCCCCCHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHHHCCCCEEH
T ss_conf 777864267999999987-89839997998999999999987994006
No 474
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.30 E-value=67 Score=14.42 Aligned_cols=48 Identities=17% Similarity=0.161 Sum_probs=31.5
Q ss_pred HHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHCCCCCEEEEECCCCHH
Q ss_conf 9999718998999983655-----999799999999858998599994379789
Q gi|254780312|r 39 YDKVREEPFSLLLTDIVMP-----EMDGIELARRATELDPDLKVMFITGFAAVA 87 (122)
Q Consensus 39 l~~~~~~~~dlii~D~~mP-----~~dG~el~~~ir~~~~~~pii~~s~~~~~~ 87 (122)
.+.+.+..||++|+|--.. -++--++++.+++ .|.---+++||....+
T Consensus 108 ~~~l~~g~~DlvVLDEi~~Al~~gll~~eeVi~~L~~-rP~~~evVLTGR~ap~ 160 (178)
T PRK07414 108 QQVVDEGKYELVVLDELSLAIQFGLIPETEVLEFLEK-RPSHVDVILTGPEMPE 160 (178)
T ss_pred HHHHHCCCCCEEEECHHHHHHHCCCCCHHHHHHHHHH-CCCCCEEEEECCCCCH
T ss_conf 9998688988899703689987699259999999981-8999889996999999
No 475
>TIGR01122 ilvE_I branched-chain amino acid aminotransferase; InterPro: IPR005785 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped into subfamilies. One of these, called class-IV, currently consists of proteins of about 270 to 415 amino-acid residues that share a few regions of sequence similarity. Surprisingly, the best conserved region does not include the lysine residue to which the pyridoxal-phosphate group is known to be attached, in ilvE, but is located some 40 residues at the C-terminus side of the PlP-lysine. Among the class IV aminotransferases are two phylogenetically separable groups of branched-chain amino acid aminotransferase (IlvE) (2.6.1.42 from EC). The last common ancestor of the two lineages appears also to have given rise to a family of D-amino acid aminotransferases (DAAT). This model represents the IlvE family more strongly similar to the DAAT family. ; GO: 0004084 branched-chain-amino-acid transaminase activity, 0009081 branched chain family amino acid metabolic process.
Probab=22.24 E-value=67 Score=14.41 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=27.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC
Q ss_conf 99859999437978999999976998699769798999999999960369
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~~~ 122 (122)
++=|+|+.-. +-..+....-=...+.=|+++++|.+++..+|+..|
T Consensus 37 ~~G~~IFRl~----EH~~RL~dSAki~~~~ipys~eel~ea~~E~lR~Nn 82 (302)
T TIGR01122 37 DKGPAIFRLK----EHVDRLYDSAKILRMEIPYSKEELMEATRETLRKNN 82 (302)
T ss_pred CCCCEEEEHH----HHHHHHHHCHHHHCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9988888375----558888512133248899898999999999987338
No 476
>KOG2794 consensus
Probab=22.04 E-value=68 Score=14.38 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=27.0
Q ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCC
Q ss_conf 9989999836559997999999998589985999943797899999997699
Q gi|254780312|r 46 PFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKN 97 (122)
Q Consensus 46 ~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~ 97 (122)
--|.+++- |++--++.++..++..|++|+-...-.++..+...+-+.|+
T Consensus 254 GAD~lmVK---Pg~pyLDIir~~kd~~~dlpi~ayqVSGEyaMi~aaa~~g~ 302 (340)
T KOG2794 254 GADILMVK---PGLPYLDIIRLLKDKTPDLPIAAYQVSGEYAMIKAAALAGM 302 (340)
T ss_pred CCCEEEEC---CCCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCC
T ss_conf 67668855---99728999999874388884489884416899998886162
No 477
>cd00001 PTS_IIB_man PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.
Probab=21.89 E-value=68 Score=14.37 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=44.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHHC---CCEEEEECCHHHHHHHHHHCC---CCEEEEEEECCCCCHHHHHHHHHHHCCCCC
Q ss_conf 66999759989999999999988---989999999799999997189---989999836559997999999998589985
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKA---GYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMDGIELARRATELDPDLK 76 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~---G~~v~~a~~g~~al~~~~~~~---~dlii~D~~mP~~dG~el~~~ir~~~~~~p 76 (122)
++|+||||+...-.+.+..|... |.++. .-+.++|.+.+.+.. ..++++ ....+-+.++-+..+.++
T Consensus 26 ~~IvVvdD~~A~d~~~k~~l~mA~P~gvk~~-i~sv~~a~~~l~~~~~~~~~ilil------~k~~~da~~l~~~g~~i~ 98 (151)
T cd00001 26 NRIIVVNDEVANDELRKTLLKLAAPPGVKLR-IFTVEKAIEAINSPKYDKQRVFLL------FKNPQDVLRLVEGGVPIK 98 (151)
T ss_pred CEEEEECCHHCCCHHHHHHHHHHCCCCCEEE-EEEHHHHHHHHHCCCCCCCEEEEE------ECCHHHHHHHHHCCCCCC
T ss_conf 9999976223079999999997589998899-987999999985666789669999------899999999997499988
Q ss_pred EEEEEC
Q ss_conf 999943
Q gi|254780312|r 77 VMFITG 82 (122)
Q Consensus 77 ii~~s~ 82 (122)
-+-+-+
T Consensus 99 ~invG~ 104 (151)
T cd00001 99 TINVGN 104 (151)
T ss_pred EEEECC
T ss_conf 799899
No 478
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=21.85 E-value=68 Score=14.36 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHCCCCEEEEEEECCC-CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 99997189989999836559-99799999999858998599994379789999999769986997
Q gi|254780312|r 39 YDKVREEPFSLLLTDIVMPE-MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 39 l~~~~~~~~dlii~D~~mP~-~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
.+.+.+...|++++|..=-. ..-.++++.+|+..|++|||. -.....+........|++.+..
T Consensus 99 ~~~l~~ag~d~i~IDvAhG~~~~~~~~ik~ir~~~p~~~Iia-GNV~T~e~a~~L~~~GaD~vkV 162 (325)
T cd00381 99 AEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHCCCCEEEEECHHCCCHHHHHHHHHHHHHCCCCCEEE-CCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999997699899987000345889999999997689975686-4566899999998669989997
No 479
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=21.83 E-value=69 Score=14.36 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q ss_conf 5998999999999998898
Q gi|254780312|r 9 EDDDDMRRFLIKALGKAGY 27 (122)
Q Consensus 9 DD~~~~r~~l~~~L~~~G~ 27 (122)
.|+......+...+...|+
T Consensus 152 ~g~~~~~~~f~~~l~~~gl 170 (271)
T PRK03669 152 RDSDERMAQFTARLNELGL 170 (271)
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 7989999999999997695
No 480
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=21.78 E-value=69 Score=14.35 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHHHHHHHHCCCEEEE-ECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHH----HHHHHHHCC-CCCEEEEECCCCHHH
Q ss_conf 99999999988989999-999799999997189989999836559997999----999998589-985999943797899
Q gi|254780312|r 15 RRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL----ARRATELDP-DLKVMFITGFAAVAL 88 (122)
Q Consensus 15 r~~l~~~L~~~G~~v~~-a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el----~~~ir~~~~-~~pii~~s~~~~~~~ 88 (122)
..-+...-.+.|+++.. +.|.+|.-..+. - +.-+..++=-+...|++ +..+...-| +..+|.-||....+.
T Consensus 145 l~el~~~A~~LGm~~LVEVh~~eEl~rAl~-~--ga~iIGINnRdL~tf~vdl~~t~~la~~~p~~~~~IsESGI~~~~d 221 (254)
T COG0134 145 LEELVDRAHELGMEVLVEVHNEEELERALK-L--GAKIIGINNRDLTTLEVDLETTEKLAPLIPKDVILISESGISTPED 221 (254)
T ss_pred HHHHHHHHHHCCCCEEEEECCHHHHHHHHH-C--CCCEEEEECCCCCHHEECHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf 999999999769923899789999999996-7--9988998378840210068899998844877758996179899999
Q ss_pred HHHHHHCCCCEEEECC--CCHHHHHHHHHHH
Q ss_conf 9999976998699769--7989999999999
Q gi|254780312|r 89 NPDSNAPKNAKVLSKP--FHLRDLVNEVNRL 117 (122)
Q Consensus 89 ~~~~~~~g~~~~l~KP--~~~~~L~~~i~~~ 117 (122)
..+..+.|+++||.=- .+...+.+.++++
T Consensus 222 v~~l~~~ga~a~LVG~slM~~~~~~~a~~~l 252 (254)
T COG0134 222 VRRLAKAGADAFLVGEALMRADDPEEALREL 252 (254)
T ss_pred HHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 9999974899899638885699989999986
No 481
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=21.69 E-value=69 Score=14.34 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHCCC-CEEEEEEECCCCC
Q ss_conf 97999999971899-8999983655999
Q gi|254780312|r 34 NGASAYDKVREEPF-SLLLTDIVMPEMD 60 (122)
Q Consensus 34 ~g~~al~~~~~~~~-dlii~D~~mP~~d 60 (122)
.|.++++.+++.-| -.|+.|+...+..
T Consensus 38 ~G~~~v~~lk~~~p~~~I~~DlK~~D~g 65 (206)
T TIGR03128 38 EGIEAVKEMKEAFPDRKVLADLKTMDAG 65 (206)
T ss_pred HCHHHHHHHHHHCCCCEEEEEEEECCCH
T ss_conf 6899999999878999799995044743
No 482
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=21.67 E-value=69 Score=14.34 Aligned_cols=86 Identities=14% Similarity=0.100 Sum_probs=49.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEE--CCHH----HHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 8669997599899999999999889899999--9979----9999997-1899899998365599979999999985899
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSC--NNGA----SAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELDPD 74 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a--~~g~----~al~~~~-~~~~dlii~D~~mP~~dG~el~~~ir~~~~~ 74 (122)
.||+.|+ -++...-.+.++|.+.|+++..+ .++. +.++.+. ....+.+++| +.|.+++.+.+++..|+
T Consensus 300 gkr~ai~-~~~~~~~~~~~~l~ElG~~~~~v~t~~~~~~~~~~~~~~~~~~~~~~~v~~----~~d~~el~~~i~~~~~d 374 (429)
T cd03466 300 GRKAAIY-GEPDFVVAITRFVLENGMVPVLIATGSESKKLKEKLEEDLKEYVEKCVILD----GADFFDIESYAKELKID 374 (429)
T ss_pred CCEEEEE-ECCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEE----CCCHHHHHHHHHHCCCC
T ss_conf 8679999-573669999999998799789998389867789999999974589848982----89999999999765999
Q ss_pred CCEEEEECCCCHHHHHHHHHCCCC
Q ss_conf 859999437978999999976998
Q gi|254780312|r 75 LKVMFITGFAAVALNPDSNAPKNA 98 (122)
Q Consensus 75 ~pii~~s~~~~~~~~~~~~~~g~~ 98 (122)
+++++.-.... +.+.|+-
T Consensus 375 ---liig~s~~k~i---A~klgiP 392 (429)
T cd03466 375 ---VLIGNSYGRRI---AEKLGIP 392 (429)
T ss_pred ---EEEECCCHHHH---HHHHCCC
T ss_conf ---99978526899---9980999
No 483
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.60 E-value=69 Score=14.33 Aligned_cols=80 Identities=13% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH-----CCCCEEEEEEECCCCCHHH-HHHHHHHHCCC
Q ss_conf 98669997599899999999999889899999997999999971-----8998999983655999799-99999985899
Q gi|254780312|r 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEMDGIE-LARRATELDPD 74 (122)
Q Consensus 1 M~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~-----~~~dlii~D~~mP~~dG~e-l~~~ir~~~~~ 74 (122)
+.+++||---+..+-..+++.|.+.||.+..++--++-|+.+.+ +...+-+.-..+-+.+..+ +...+++....
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf 78679997788648999999999779979999676999999999998730862799977678836799999999824885
Q ss_pred CCEEEE
Q ss_conf 859999
Q gi|254780312|r 75 LKVMFI 80 (122)
Q Consensus 75 ~pii~~ 80 (122)
+-+++-
T Consensus 85 IdvLVN 90 (265)
T COG0300 85 IDVLVN 90 (265)
T ss_pred CCEEEE
T ss_conf 238997
No 484
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.56 E-value=69 Score=14.33 Aligned_cols=79 Identities=13% Similarity=0.209 Sum_probs=51.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHC-----CCCEEEEEEECCCCCH-HHHHHHHHHHCCCC
Q ss_conf 86699975998999999999998898999999979999999718-----9989999836559997-99999999858998
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPEMDG-IELARRATELDPDL 75 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~-----~~dlii~D~~mP~~dG-~el~~~ir~~~~~~ 75 (122)
+|++||.--...+-..++..|.+.|+.|.....-++.++.+.+. ....+..|+.= .+. -++++++.+....+
T Consensus 5 gK~~lVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~Dvs~--~~~v~~~~~~~~~~~g~i 82 (238)
T PRK05786 5 GKNVLIVGVSPGLGYAVAYFALREGASVYAFARSEEKLKEIKKTLAKYGNVIYVVGDVSK--LEGAREAAEKAAKVFGAL 82 (238)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCC--HHHHHHHHHHHHHHHCCC
T ss_conf 988999289878999999999987999999969889999999987435977999757899--999999999999983998
Q ss_pred CEEEEEC
Q ss_conf 5999943
Q gi|254780312|r 76 KVMFITG 82 (122)
Q Consensus 76 pii~~s~ 82 (122)
-+++..+
T Consensus 83 D~lv~na 89 (238)
T PRK05786 83 HGLVVTA 89 (238)
T ss_pred CEEEEEC
T ss_conf 8799805
No 485
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.48 E-value=70 Score=14.31 Aligned_cols=67 Identities=19% Similarity=0.136 Sum_probs=46.8
Q ss_pred EECCHHHHHHHHHHCCCCEEEEEEECC-------CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Q ss_conf 999979999999718998999983655-------9997999999998589985999943797899999997699869
Q gi|254780312|r 31 SCNNGASAYDKVREEPFSLLLTDIVMP-------EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV 100 (122)
Q Consensus 31 ~a~~g~~al~~~~~~~~dlii~D~~mP-------~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~ 100 (122)
++.|-+++.+..+.. +|-|.+.--.| ...|++.++++++..+ +|++.+=|.+.. ...+..+.|++..
T Consensus 110 S~h~~eea~~A~~~g-~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~-iP~vAIGGi~~~-nv~~v~~~Ga~gV 183 (211)
T COG0352 110 STHDLEEALEAEELG-ADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN-IPVVAIGGINLE-NVPEVLEAGADGV 183 (211)
T ss_pred ECCCHHHHHHHHHCC-CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCC-CCEEEECCCCHH-HHHHHHHHCCCEE
T ss_conf 049999999987639-9999988867889998877467899999998279-998998488999-9999998298769
No 486
>PRK05650 short chain dehydrogenase; Provisional
Probab=21.44 E-value=70 Score=14.31 Aligned_cols=36 Identities=6% Similarity=0.240 Sum_probs=19.1
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHH
Q ss_conf 699975998999999999998898999999979999
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY 39 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al 39 (122)
||||---...+-..++..|.+.|+.|..++--++.+
T Consensus 2 rVlITGassGIG~alA~~la~~G~~V~l~~r~~~~l 37 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGG 37 (270)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 799988764999999999998899899997988999
No 487
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=21.31 E-value=70 Score=14.29 Aligned_cols=32 Identities=19% Similarity=0.413 Sum_probs=28.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEECC
Q ss_conf 66999759989999999999988989999999
Q gi|254780312|r 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNN 34 (122)
Q Consensus 3 ~rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~ 34 (122)
++|+||-..=......+++|+..||+|.....
T Consensus 99 ~~i~IIGG~G~mG~~F~~~f~~sGy~V~ild~ 130 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEK 130 (374)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 71799807982779999999967987996164
No 488
>PTZ00089 transketolase; Provisional
Probab=21.30 E-value=70 Score=14.29 Aligned_cols=54 Identities=19% Similarity=0.326 Sum_probs=35.3
Q ss_pred CEEEEECCCH---------HHHHHHHHHHHHCCCEEEEECCHH-------HHHHHHHH--CCCCEEEEEEEC
Q ss_conf 6699975998---------999999999998898999999979-------99999971--899899998365
Q gi|254780312|r 3 QKILLAEDDD---------DMRRFLIKALGKAGYEVVSCNNGA-------SAYDKVRE--EPFSLLLTDIVM 56 (122)
Q Consensus 3 ~rILiVDD~~---------~~r~~l~~~L~~~G~~v~~a~~g~-------~al~~~~~--~~~dlii~D~~m 56 (122)
+=|+++|+|. ..-+-+...++..||.|..+.+|. +|++..+. ..|-+|+..-.+
T Consensus 179 nLi~i~D~N~i~idg~~~~~~~~d~~~r~~a~gW~v~~v~~g~~d~~~i~~ai~~Ak~~~~kPtlI~~~T~i 250 (670)
T PTZ00089 179 RLILLYDDNKITIDGNTDLSFTEDIEKKFEALKWEVRKVEDGNKDFAGILHEIEEAKKNLKQPSLIIVQTAC 250 (670)
T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE
T ss_conf 889999177211468854365665999999807713433667779999999999998558998489964222
No 489
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=21.26 E-value=70 Score=14.29 Aligned_cols=21 Identities=14% Similarity=0.047 Sum_probs=10.1
Q ss_pred EEEEEEECCCCCHHHHHHHHH
Q ss_conf 999983655999799999999
Q gi|254780312|r 49 LLLTDIVMPEMDGIELARRAT 69 (122)
Q Consensus 49 lii~D~~mP~~dG~el~~~ir 69 (122)
+++-|=.+-+-.-+|.+.-..
T Consensus 102 ~l~GDGEl~EG~~wEA~~~A~ 122 (195)
T cd02007 102 AVIGDGALTGGMAFEALNNAG 122 (195)
T ss_pred EEECCCHHHHHHHHHHHHHHH
T ss_conf 997781140189999999976
No 490
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=21.18 E-value=71 Score=14.28 Aligned_cols=49 Identities=27% Similarity=0.341 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHCCCEEEE---ECCHHHHH----HHHHHCCCCEEEEEEEC-CCCC
Q ss_conf 989999999999988989999---99979999----99971899899998365-5999
Q gi|254780312|r 11 DDDMRRFLIKALGKAGYEVVS---CNNGASAY----DKVREEPFSLLLTDIVM-PEMD 60 (122)
Q Consensus 11 ~~~~r~~l~~~L~~~G~~v~~---a~~g~~al----~~~~~~~~dlii~D~~m-P~~d 60 (122)
-..+...+.+.|.+.|++|.. +.|-.+.+ +.+. ..+|+||+-=.+ |.-|
T Consensus 17 ~dtN~~~l~~~L~~~G~~v~~~~~v~D~~~~I~~al~~~~-~~~d~vi~tGGlGPT~D 73 (170)
T cd00885 17 VDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-ERADLVITTGGLGPTHD 73 (170)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHH-HCCCEEEEECCCCCCCC
T ss_conf 3324999999999779826689993988999999999997-41999999478778998
No 491
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=21.18 E-value=71 Score=14.28 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCCEEEEECCHH------HHHHHHHHCCCCEEEEEE
Q ss_conf 999999999998898999999979------999999718998999983
Q gi|254780312|r 13 DMRRFLIKALGKAGYEVVSCNNGA------SAYDKVREEPFSLLLTDI 54 (122)
Q Consensus 13 ~~r~~l~~~L~~~G~~v~~a~~g~------~al~~~~~~~~dlii~D~ 54 (122)
.+...+...+++.||.+..+.+.. ++++.+.+..+|-+|+--
T Consensus 75 ~i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 75 EILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999998399899983789869999999999876989899935
No 492
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=21.14 E-value=71 Score=14.27 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHCCCCEEEEEEECC-CCCHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHCCCCEE
Q ss_conf 9999718998999983655-99979999999985899859999437-97899999997699869
Q gi|254780312|r 39 YDKVREEPFSLLLTDIVMP-EMDGIELARRATELDPDLKVMFITGF-AAVALNPDSNAPKNAKV 100 (122)
Q Consensus 39 l~~~~~~~~dlii~D~~mP-~~dG~el~~~ir~~~~~~pii~~s~~-~~~~~~~~~~~~g~~~~ 100 (122)
.+.+-+--.|+|++|-.=- ...=++.++++|+.+|+++||. |. ...+.+....+.|++..
T Consensus 244 ~~~L~~AGvDv~viDsshGhs~~vl~~ik~~k~~Yp~~~iia--GNVaT~~~a~~LI~AgADg~ 305 (476)
T TIGR01302 244 AEALVEAGVDVIVIDSSHGHSIYVLDSIKKIKKTYPDLDIIA--GNVATAEQAKALIDAGADGL 305 (476)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEE--CCCCCHHHHHHHHHCCCCEE
T ss_conf 999996596589981665453789999999986388057994--34411788988985288878
No 493
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006417 The NadR protein of Escherichia coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal region is a DNA-binding helix-turn-helix domain (IPR001387 from INTERPRO) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this family share that activity. ; GO: 0003677 DNA binding, 0030528 transcription regulator activity, 0006810 transport, 0019363 pyridine nucleotide biosynthetic process, 0045449 regulation of transcription.
Probab=21.04 E-value=71 Score=14.26 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=45.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEECCHHHHHHHHHHCCCCEEEE-EEECC-CCCHH----------HHHHHH
Q ss_conf 866999759989999999999988-989999999799999997189989999-83655-99979----------999999
Q gi|254780312|r 2 NQKILLAEDDDDMRRFLIKALGKA-GYEVVSCNNGASAYDKVREEPFSLLLT-DIVMP-EMDGI----------ELARRA 68 (122)
Q Consensus 2 ~~rILiVDD~~~~r~~l~~~L~~~-G~~v~~a~~g~~al~~~~~~~~dlii~-D~~mP-~~dG~----------el~~~i 68 (122)
++||+++|-|...=++.+..+... .|+-.+ --....+.+.+|||+|+ .=+-| .-||+ ++.+.+
T Consensus 248 nq~v~f~DTD~i~T~vfa~~y~G~eDfeql~----P~~~~~i~~~r~DL~ll~~p~tew~~Dg~R~l~~~~~R~~F~~~l 323 (346)
T TIGR01526 248 NQKVAFIDTDFITTQVFAKLYEGREDFEQLH----PFLKKTIAEYRFDLTLLLKPNTEWVDDGLRSLGSEESRKEFQELL 323 (346)
T ss_pred CCEEEEEECCHHHHHHHHHHCCCCCCHHHCC----HHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCHHHHHHHHHHH
T ss_conf 3747898477678999998707865544506----278877632788479972799873428852077432278999999
Q ss_pred HHH--CCCCCEEEEEC
Q ss_conf 985--89985999943
Q gi|254780312|r 69 TEL--DPDLKVMFITG 82 (122)
Q Consensus 69 r~~--~~~~pii~~s~ 82 (122)
.+. .-.++.+.+++
T Consensus 324 ~~~L~~~~~~f~~v~~ 339 (346)
T TIGR01526 324 ERALAEFGLSFVVVEE 339 (346)
T ss_pred HHHHHHCCCCEEEEEC
T ss_conf 9999970994699833
No 494
>PRK13055 putative lipid kinase; Reviewed
Probab=21.02 E-value=71 Score=14.26 Aligned_cols=68 Identities=22% Similarity=0.320 Sum_probs=37.4
Q ss_pred CCCEEEEECC-------CHHHHHHHHHHHHHCCCEEEEE---CCHHHHHHH---HHHCCCCEEEEEEECCCCCHH--HHH
Q ss_conf 9866999759-------9899999999999889899999---997999999---971899899998365599979--999
Q gi|254780312|r 1 MNQKILLAED-------DDDMRRFLIKALGKAGYEVVSC---NNGASAYDK---VREEPFSLLLTDIVMPEMDGI--ELA 65 (122)
Q Consensus 1 M~~rILiVDD-------~~~~r~~l~~~L~~~G~~v~~a---~~g~~al~~---~~~~~~dlii~D~~mP~~dG~--el~ 65 (122)
|.||+++|=. -.....-+...|++.||++... ..+..|-+. .....||+|+.= +-||. |++
T Consensus 1 MmKr~~lIvNP~SG~g~~~~~~~~i~~~L~~~g~e~~~~~tt~~~~~a~~~a~~a~~~g~d~Iva~----GGDGTinevv 76 (334)
T PRK13055 1 MQKRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEARRAAKAGFDLIIAA----GGDGTINEVV 76 (334)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEE----CCCCHHHHHH
T ss_conf 970699999987789757889999999999869859999944178579999998765799899998----7760899999
Q ss_pred HHHHHHC
Q ss_conf 9999858
Q gi|254780312|r 66 RRATELD 72 (122)
Q Consensus 66 ~~ir~~~ 72 (122)
.-+....
T Consensus 77 ngl~~~~ 83 (334)
T PRK13055 77 NGIAPLE 83 (334)
T ss_pred HHHHCCC
T ss_conf 9873469
No 495
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=20.84 E-value=72 Score=14.23 Aligned_cols=57 Identities=11% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH-HHH-CCCCEEEECCCCHHHHHHHHHHHHH
Q ss_conf 59997999999998589985999943797899999-997-6998699769798999999999960
Q gi|254780312|r 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPD-SNA-PKNAKVLSKPFHLRDLVNEVNRLLT 119 (122)
Q Consensus 57 P~~dG~el~~~ir~~~~~~pii~~s~~~~~~~~~~-~~~-~g~~~~l~KP~~~~~L~~~i~~~l~ 119 (122)
-.-.|..+.+.+.. .+|+|++...+.+|.... ... .|+. ...+ +++++.+.|..+++
T Consensus 279 TKpGGlT~sEAla~---~lPmii~~piPGQEe~Na~~l~~~G~a-~~~~--~~~~~~~~v~~l~~ 337 (391)
T PRK13608 279 TKPGGITITEGFAR---CIPMIFLNPAPGQELENALYFEEKGFG-KIAD--TPEEAIKIVASLTN 337 (391)
T ss_pred ECCCHHHHHHHHHH---CCCEEECCCCCCCHHHHHHHHHHCCCE-EEEC--CHHHHHHHHHHHHC
T ss_conf 67866799999995---899897579997446679999968976-8859--99999999999855
No 496
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=20.81 E-value=72 Score=14.23 Aligned_cols=44 Identities=9% Similarity=0.085 Sum_probs=27.0
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHC
Q ss_conf 8998599994379789999999769986997697989999999999603
Q gi|254780312|r 72 DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 (122)
Q Consensus 72 ~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~l~~ 120 (122)
...+|+|..- .+. ..+....|.++|+..| +.++|.+++.++|+-
T Consensus 321 a~G~PVVasd-~gG---~~E~I~~g~~G~Lv~~-d~~~la~~i~~ll~d 364 (392)
T cd03805 321 YAGKPVIACN-SGG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred HCCCCEEEEC-CCC---CHHHEECCCEEEEECC-CHHHHHHHHHHHHCC
T ss_conf 7799999948-998---6766457966999595-999999999999789
No 497
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=20.60 E-value=73 Score=14.20 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=47.4
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEEC--CCCCHHHHHHHHHHH-CCCCCEE-EE
Q ss_conf 9997599899999999999889899999997999999971899899998365--599979999999985-8998599-99
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATEL-DPDLKVM-FI 80 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~m--P~~dG~el~~~ir~~-~~~~pii-~~ 80 (122)
|||+|=-...- +.+.+++.|..++...+-. -++.+.+..|+.|++-=.= |.-. -...+.+++. ..++||+ ++
T Consensus 1 i~ilDfGsqy~--i~r~lrelg~~~~v~~~~~-~~~~i~~~~p~giIlS~GPg~p~~~-~~~~~~~~~~~~~~iPILGIC 76 (178)
T cd01744 1 VVVIDFGVKHN--ILRELLKRGCEVTVVPYNT-DAEEILKLDPDGIFLSNGPGDPALL-DEAIKTVRKLLGKKIPIFGIC 76 (178)
T ss_pred CEEEECCCHHH--HHHHHHHCCCEEEEEECCC-CHHHHHHCCCCEEEECCCCCCHHHH-CCHHHHHHHHHHCCCCEEEEC
T ss_conf 99998874999--9999998799799993989-9999984199979989999995773-444999999974699889981
Q ss_pred ECCC
Q ss_conf 4379
Q gi|254780312|r 81 TGFA 84 (122)
Q Consensus 81 s~~~ 84 (122)
-|+.
T Consensus 77 lG~Q 80 (178)
T cd01744 77 LGHQ 80 (178)
T ss_pred HHHH
T ss_conf 2178
No 498
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=20.57 E-value=73 Score=14.20 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=40.5
Q ss_pred EEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 999759989999999999988989999999799999997189989999836559997999999998589985999
Q gi|254780312|r 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMF 79 (122)
Q Consensus 5 ILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~ 79 (122)
.++|||.+.+..-++..|++.||-+++-.-|..- .+++-=+-+.-.+ +.-.+-+-+|+..+-+.++-
T Consensus 4 svlveN~pGvL~Rit~lF~rRg~NI~Sl~v~~te-------~~~~sR~tivv~~-~~~~i~qi~kQL~KlidVi~ 70 (72)
T cd04878 4 SVLVENEPGVLNRISGLFARRGFNIESLTVGPTE-------DPGISRITIVVEG-DDDVIEQIVKQLNKLVDVLK 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEECC-------CCCEEEEEEEEEC-CHHHHHHHHHHHHCCCCEEE
T ss_conf 9999778789999999986078556789986137-------9984899999978-88999999999857768799
No 499
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=20.38 E-value=74 Score=14.17 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCEEEEECCC-------HHHHHHHHHHHHHC--CCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHC
Q ss_conf 8669997599-------89999999999988--98999999979999999718998999983655999799999999858
Q gi|254780312|r 2 NQKILLAEDD-------DDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD 72 (122)
Q Consensus 2 ~~rILiVDD~-------~~~r~~l~~~L~~~--G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~ 72 (122)
+..|||=|.+ ......+...-... ..-...+.|-+++.+.+..+ +|.|++| +|+-.+=-+..+.+++..
T Consensus 157 sD~vLIKdNH~~~~~~~~~~~~ai~~~r~~~p~~kIeVEv~tl~~~~ea~~~g-aD~IlLD-nmsp~~l~~av~~~~~~~ 234 (284)
T PRK06096 157 AETILLFANHRHFLHDNQDWSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQ-PDVLQLD-KFSPQQATEIAQIAPSLA 234 (284)
T ss_pred CCEEEEECCHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCC-CCEEEEC-CCCHHHHHHHHHHHHHHC
T ss_conf 63588700249887253579999999997589998899809999999998579-9999968-989999999999987217
Q ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEEE
Q ss_conf 998599994379789999999769986997
Q gi|254780312|r 73 PDLKVMFITGFAAVALNPDSNAPKNAKVLS 102 (122)
Q Consensus 73 ~~~pii~~s~~~~~~~~~~~~~~g~~~~l~ 102 (122)
|. .++-.||--..+.....-+.|++-+.+
T Consensus 235 ~~-~~lEaSGGI~~~ni~~yA~tGVD~i~t 263 (284)
T PRK06096 235 PH-CTLALTGGINLTTLKNYLDCGIRLFIT 263 (284)
T ss_pred CC-EEEEEECCCCHHHHHHHHHCCCCEEEE
T ss_conf 97-799998999999999999809999982
No 500
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=20.27 E-value=74 Score=14.16 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEECCH------HHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 899999999999889899999997------99999997189989999836559997999999998589985999943797
Q gi|254780312|r 12 DDMRRFLIKALGKAGYEVVSCNNG------ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAA 85 (122)
Q Consensus 12 ~~~r~~l~~~L~~~G~~v~~a~~g------~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~~~ 85 (122)
..+...+...+++.||++..+.+. .+.++.+.++.+|.+|+--.-+.. .+.++.+++.. +|++.+-....
T Consensus 15 ~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~--~~~~~~~~~~~--ipvV~~~~~~~ 90 (264)
T cd01537 15 AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTA--PTIVKLARKAG--IPVVLVDRDIP 90 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC--HHHHHHHHHCC--CCEEEECCCCC
T ss_conf 999999999999869989999799998999999999997699999996798886--89999999759--97999856678
Done!