HHsearch alignment for GI: 254780312 and conserved domain: pfam06490
>pfam06490 FleQ Flagellar regulatory protein FleQ. This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to pfam00072, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (pfam00072).
Probab=98.82 E-value=1.4e-07 Score=66.50 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=85.4
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 69997599899999999999889899999997999999971899899998365599979999999985899859999437
Q gi|254780312|r 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83 (122)
Q Consensus 4 rILiVDD~~~~r~~l~~~L~~~G~~v~~a~~g~~al~~~~~~~~dlii~D~~mP~~dG~el~~~ir~~~~~~pii~~s~~ 83 (122)
T Consensus 1 kILvIddd~~r~~~L~~ILeFlGE~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~--~~~~~l~~l~~~~p~~Pvlllg~~ 78 (109)
T pfam06490 1 KILVIDDDAERRHDLSTILEFLGEQCEAVSSEDLSAALLSSRWEALAVILGSVS--GLADLLKALAKWDPHLPVLLLGEH 78 (109)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCCCEEEEEECCCC--CHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 989986888999979999986499649954889889886378852999967852--099999999964889999998788
Q ss_pred CCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9789999999769986997697989999999999
Q gi|254780312|r 84 AAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117 (122)
Q Consensus 84 ~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~ 117 (122)
T Consensus 79 ~~~~~-----~~nvvg~Le~Pl~Y~qL~daLh~c 107 (109)
T pfam06490 79 DSAAE-----LANVIGELEEPLNYPQLTDLLHRC 107 (109)
T ss_pred CCHHH-----CCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 75212-----055258707889879999999875