BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780312|ref|YP_003064725.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|332968094|gb|EGK07181.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 237
Score = 177 bits (450), Expect = 6e-43, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + L K G+ V ++G +A +KV E P L++ D+++P+MD
Sbjct: 2 MSKKVLVVDDEPSIVKLVQFNLEKEGFSVEVASDGQTALEKVNEHPPDLIVLDLMLPKMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + + L ++ +T ++KPF R+LV V +L
Sbjct: 62 GLEVCKQIRKENSHLPILMLTAKNEEFDKVLGLELGADDYMTKPFSPRELVARVKAILRR 121
>gi|313902101|ref|ZP_07835512.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
gi|313467619|gb|EFR63122.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
Length = 294
Score = 174 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 60/118 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD + L + L G+ V + ++G A RE+P L++ DI+MP MDG+
Sbjct: 72 ERILVVDDDPAVTSLLKRGLAYEGFAVDTASSGEEALRIAREQPPDLVILDIMMPGMDGL 131
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R DP+L V+F+T A A + KPF LV V LL
Sbjct: 132 EVLQRLRAADPELPVLFLTARDAPADQVQGLEAGADDYVVKPFTFEVLVARVRALLRR 189
>gi|229065726|ref|ZP_04200950.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH603]
gi|228715544|gb|EEL67345.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH603]
Length = 237
Score = 173 bits (441), Expect = 6e-42, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + GYEV + NG +D + L++ D++MP+ D
Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREGYEVYTAMNGMEGWDVFHQYQPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T ++KPF R+LV V +L
Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 119
Query: 121 KN 122
N
Sbjct: 120 GN 121
>gi|326442416|ref|ZP_08217150.1| putative two-component systen response regulator [Streptomyces
clavuligerus ATCC 27064]
Length = 342
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+
Sbjct: 107 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 166
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 167 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 226
>gi|229012417|ref|ZP_04169592.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
gi|229170815|ref|ZP_04298429.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|228612653|gb|EEK69862.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|228748776|gb|EEL98626.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
Length = 237
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D
Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T L+KPF R+LV V +L
Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119
>gi|294814012|ref|ZP_06772655.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294326611|gb|EFG08254.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 340
Score = 171 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+
Sbjct: 105 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 164
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 165 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 224
>gi|229133940|ref|ZP_04262762.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
gi|228649500|gb|EEL05513.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
Length = 237
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D
Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T L+KPF R+LV V +L
Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119
>gi|206968679|ref|ZP_03229634.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus AH1134]
gi|229096888|ref|ZP_04227857.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
gi|229115876|ref|ZP_04245274.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|229173099|ref|ZP_04300650.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
gi|229182148|ref|ZP_04309435.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|206735720|gb|EDZ52878.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus AH1134]
gi|228601322|gb|EEK58856.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|228610432|gb|EEK67703.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
gi|228667619|gb|EEL23063.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228686498|gb|EEL40407.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
Length = 237
Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D
Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGKEGWDLFLTHQPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T L+KPF R+LV V +L
Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119
>gi|333025498|ref|ZP_08453562.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
gi|332745350|gb|EGJ75791.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
Length = 264
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG+
Sbjct: 33 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 92
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 93 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 152
>gi|295101234|emb|CBK98779.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii L2-6]
Length = 232
Score = 170 bits (433), Expect = 5e-41, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY+V + N+G +K + ++L D++MP MDG
Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLEKFNQLKPDMVLLDVMMPRMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR +L + VM +T + KPF +++V + +L
Sbjct: 63 LEVCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120
>gi|229102995|ref|ZP_04233684.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
gi|228680410|gb|EEL34598.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
Length = 237
Score = 170 bits (432), Expect = 7e-41, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + YEV + NG +D L++ D++MP+ D
Sbjct: 1 MKKRILIVEDEENIREVCKRYLEREEYEVYTAVNGREGWDLFLTHRPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T L+KPF R+LV V +L
Sbjct: 61 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR 119
>gi|284031362|ref|YP_003381293.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283810655|gb|ADB32494.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 244
Score = 169 bits (431), Expect = 9e-41, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +D+ ++ L +L AGY+V + +G A K RE L++ D++MP +D
Sbjct: 12 MSPHLLVVDDEPNIVELLSASLRFAGYDVTTAAHGTEALRKAREVEPDLVVLDVMMPGLD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR D + V+F+T AV ++KPF L +LV V LL
Sbjct: 72 GFEVVRRLRGEDRHVPVLFLTARDAVEDKVLGLQTGGDDYVTKPFSLDELVARVRALLRR 131
>gi|288554581|ref|YP_003426516.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
gi|288545741|gb|ADC49624.1| two-component response regulator yycF [Bacillus pseudofirmus OF4]
Length = 236
Score = 169 bits (430), Expect = 1e-40, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ + L L K G+EV +G A ++V++E L+L DI++P D
Sbjct: 1 MDKRILVVDDEKPIADILKFNLEKEGFEVFCAYDGNEAVEQVKKEEPDLILLDIMLPHKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKSY-DIPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|297616303|ref|YP_003701462.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
gi|297144140|gb|ADI00897.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
Length = 228
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ ++ L L K GY V + +G A K R L++ DI++P+ D
Sbjct: 1 MASTILVVEDEELVQELLRLYLEKEGYAVEAAWDGEEALSKFRSNNPDLVILDIMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + ++ +T + + KPF +LV V +L
Sbjct: 61 GWTVCREIRAM-SNAPIIMLTAKGEESDRVLGLDLGADDYVCKPFSPIELVARVKAVLRR 119
>gi|295104470|emb|CBL02014.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 232
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG
Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + VM +T + KPF +++V + +L
Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120
>gi|229000526|ref|ZP_04160071.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock3-17]
gi|229007908|ref|ZP_04165478.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock1-4]
gi|228753336|gb|EEM02804.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock1-4]
gi|228759238|gb|EEM08239.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock3-17]
Length = 248
Score = 169 bits (429), Expect = 2e-40, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ ED++++R + L + GYEV + NG +D L+L D++MP+ D
Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMPKKD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T ++KPF R+LV V +L
Sbjct: 69 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKR 127
Query: 121 KN 122
N
Sbjct: 128 GN 129
>gi|313112960|ref|ZP_07798604.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624725|gb|EFQ08036.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 232
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY+V N+G +K + ++L D++MP+MDG
Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTVANDGEEGLEKFNQVKPDMVLLDVMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + VM +T + KPF +++V + +L
Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120
>gi|147676580|ref|YP_001210795.1| hypothetical protein PTH_0245 [Pelotomaculum thermopropionicum SI]
gi|146272677|dbj|BAF58426.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 357
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L G+ V +G A + + + LL+ D++MP +DG
Sbjct: 128 KILVVDDERKIREVVRMYLENEGFAVGEATDGREALNLLTGGKWDLLILDLMMPGVDGWS 187
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L ++ +T A + KPF R+LV V +L
Sbjct: 188 VCREVRKTTA-LPIIMLTARDAEVDRIVGLELGADDYVVKPFSPRELVARVKAVLRR 243
>gi|302520777|ref|ZP_07273119.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302429672|gb|EFL01488.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 244
Score = 168 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG+
Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALQKAAATPPDLVVLDIQMPGMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132
>gi|160942672|ref|ZP_02089915.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
M21/2]
gi|158446027|gb|EDP23030.1| hypothetical protein FAEPRAM212_00144 [Faecalibacterium prausnitzii
M21/2]
Length = 232
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY+V N+G +K ++L D++MP MDG
Sbjct: 3 NEKILVVDDDANICELLRLYLTKEGYQVTVANDGEEGLEKFNAVKPDMVLLDVMMPRMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + VM +T + KPF +++V + +L
Sbjct: 63 LEVCRRIRKAG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDAKEVVARIKAVLRR 120
>gi|228989676|ref|ZP_04149658.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
gi|228770010|gb|EEM18592.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
Length = 237
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++I++ ED+D++R + L + GYEV + NG ++ ++ L++ D++MP+ D
Sbjct: 1 MKKRIVIIEDEDNIREICKRYLEREGYEVYTAVNGTEGWNVFQQYQPDLIILDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T ++KPF R+LV V +L
Sbjct: 61 GWELCEEIRQ-YSNVPIIMLTARGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 119
Query: 121 KN 122
N
Sbjct: 120 GN 121
>gi|288553693|ref|YP_003425628.1| two-component response regulator [Bacillus pseudofirmus OF4]
gi|288544853|gb|ADC48736.1| two-component response regulator involved in phosphate regulation
[Bacillus pseudofirmus OF4]
Length = 241
Score = 168 bits (427), Expect = 3e-40, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +D++ + L L ++G+EV ++G ++EPF LL+ D+++P++D
Sbjct: 1 MAQRILVVDDEESIATLLQFNLEQSGFEVTVASDGEEGLALAKDEPFDLLILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GLDICKQLRQNKKMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRR 120
>gi|257440065|ref|ZP_05615820.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
A2-165]
gi|257197417|gb|EEU95701.1| DNA-binding response regulator SrrA [Faecalibacterium prausnitzii
A2-165]
Length = 232
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY+V + N+G DK + ++L D++MP+MDG
Sbjct: 3 NEKILVVDDDTNICELLRLYLTKEGYQVTTANDGEEGLDKFNQVKPDMVLLDVMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR +L + VM +T + KPF +++V + +L
Sbjct: 63 LEVCRRIRKLG-NTPVMMLTAKGETFDKVLGLELGADDYMVKPFDTKEVVARIKAVLRR 120
>gi|229119190|ref|ZP_04248509.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228664279|gb|EEL19801.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
Length = 256
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ ED++++R + L + YEV + NG +D L++ D++MP+ D
Sbjct: 20 MKRRVLIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDLFLTHQPDLIILDLMMPKKD 79
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T ++KPF R+LV V +L
Sbjct: 80 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYVTKPFSPRELVLRVQIILRR 138
>gi|295837513|ref|ZP_06824446.1| DNA-binding response regulator [Streptomyces sp. SPB74]
gi|295826557|gb|EFG64921.1| DNA-binding response regulator [Streptomyces sp. SPB74]
Length = 244
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY V +G A + P L++ DI MP MDG+
Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRQAAATPPDLVVLDIQMPGMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132
>gi|318059644|ref|ZP_07978367.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|318078239|ref|ZP_07985571.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 244
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY V +G A K P L++ DI MP MDG+
Sbjct: 13 QRILVVDDEPAVREALRRSLVFEGYGVEVAADGHEALRKAAATPPDLVVLDIQMPGMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 73 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 132
>gi|296112289|ref|YP_003626227.1| two-component system response regulator [Moraxella catarrhalis RH4]
gi|295919983|gb|ADG60334.1| two-component system response regulator [Moraxella catarrhalis RH4]
gi|326561799|gb|EGE12134.1| osmolarity response regulator [Moraxella catarrhalis 7169]
gi|326562259|gb|EGE12585.1| osmolarity response regulator [Moraxella catarrhalis 103P14B1]
gi|326563236|gb|EGE13503.1| osmolarity response regulator [Moraxella catarrhalis 46P47B1]
gi|326564762|gb|EGE14975.1| osmolarity response regulator [Moraxella catarrhalis 12P80B1]
gi|326568975|gb|EGE19044.1| osmolarity response regulator [Moraxella catarrhalis BC1]
gi|326569275|gb|EGE19336.1| osmolarity response regulator [Moraxella catarrhalis BC7]
gi|326571952|gb|EGE21957.1| osmolarity response regulator [Moraxella catarrhalis BC8]
gi|326575462|gb|EGE25387.1| osmolarity response regulator [Moraxella catarrhalis 101P30B1]
gi|326576449|gb|EGE26357.1| osmolarity response regulator [Moraxella catarrhalis CO72]
gi|326577920|gb|EGE27784.1| osmolarity response regulator [Moraxella catarrhalis O35E]
Length = 244
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L + L GY V ++G + E FSL++ D+++P+ D
Sbjct: 8 MTHRILVVDDDARLRTLLQRFLEDDGYVVRVAHDGKQMDKLIAREMFSLIVLDLMLPDED 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + +R + + ++ +T + A L KPF+ ++L+ + +L
Sbjct: 68 GIAICKRLRAENSSIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 127
Query: 121 KN 122
+N
Sbjct: 128 QN 129
>gi|110801119|ref|YP_695076.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|110675766|gb|ABG84753.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
Length = 231
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKLIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|148654922|ref|YP_001275127.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148567032|gb|ABQ89177.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 229
Score = 167 bits (425), Expect = 5e-40, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R + L G+ V+ +GA VRE+ L++ D++MPEMDG
Sbjct: 7 RRILIVDDEPGLRDLVRINLEHEGFSVLEAESGAQGLQMVREQHPDLMILDVMMPEMDGW 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E + V+ +T L+KPF++ +L + LL
Sbjct: 67 EVCRRLRE-FSQIPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123
>gi|15615719|ref|NP_244023.1| two-component response regulator involved in phosphate regulation
[Bacillus halodurans C-125]
gi|10175779|dbj|BAB06876.1| two-component response regulator involved in phosphate regulation
[Bacillus halodurans C-125]
Length = 239
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ +D++ + L L ++GYEVV+ +GAS + + F L++ D+++PEMD
Sbjct: 1 MTQRLLVVDDEESIVTLLQFNLEQSGYEVVTAMDGASGLQLAKTQTFDLIILDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GLDVCKQLRQSKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVRAILRR 120
>gi|308174605|ref|YP_003921310.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
gi|307607469|emb|CBI43840.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
gi|328554528|gb|AEB25020.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
gi|328912934|gb|AEB64530.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
Length = 239
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + L L ++GY+V++ ++G A ++ +E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALEQAEKENPDLIVLDVMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ ++ + + ++ +T ++KPF R++ V +L
Sbjct: 61 GIDVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRR 120
>gi|194017268|ref|ZP_03055880.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
gi|194011136|gb|EDW20706.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
Length = 242
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD
Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRR 120
>gi|168206757|ref|ZP_02632762.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|168211944|ref|ZP_02637569.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|182625729|ref|ZP_02953497.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|170661839|gb|EDT14522.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170710113|gb|EDT22295.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|177908991|gb|EDT71473.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
Length = 231
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|301059336|ref|ZP_07200263.1| putative Sensory transduction protein regX3 [delta proteobacterium
NaphS2]
gi|300446565|gb|EFK10403.1| putative Sensory transduction protein regX3 [delta proteobacterium
NaphS2]
Length = 235
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+AEDD + L+ L GY+V+ ++G A D + PF L+L DI+MP
Sbjct: 1 MMAHILVAEDDRHILSGLVDTLESEGYQVMPASDGEEALDLFKNNPFDLVLLDIMMPGKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R D D+ ++ +T ++KPF + +L+ + +L
Sbjct: 61 GYDVCREIRSTDEDIPIIMLTAKGEEIDKVVGLQLGADDYITKPFGVHELLARIAAVLRR 120
>gi|22299907|ref|NP_683154.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22296092|dbj|BAC09916.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 251
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY VV+ +G A K R+E L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYTVVTAADGEEALTKFRQEQPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|295838770|ref|ZP_06825703.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
gi|295827181|gb|EFG65293.1| DNA-binding response regulator ResD [Streptomyces sp. SPB74]
Length = 345
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + + L +AGY V +G SA + L++ D+++P MDG+E
Sbjct: 15 HVLVVDDDPTVAEVVAGYLDRAGYTVDLAGDGPSALARAHAHRPDLVVLDLMLPGMDGLE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+ +T ++KPF R+LV V +L
Sbjct: 75 VCRRLRER-AAVPVVMLTARGDEEDRVLGLEQGADDYVTKPFSPRELVLRVASVLRR 130
>gi|296132738|ref|YP_003639985.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296031316|gb|ADG82084.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 230
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+A+DD ++ L L K GYEV NG A DK L++ D++MPE+D
Sbjct: 1 MS-KILVADDDPNVIELLKIYLQKEGYEVFFAENGREAVDKANSTKPDLIVLDLMMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + + ++ +T ++KPF+ R++V + +L
Sbjct: 60 GLEVCRQIR-MHSRVPIIMLTAKDEDMDKILGLEMGADDYITKPFNPREVVARIKAVLRR 118
>gi|157693311|ref|YP_001487773.1| response regulator PhoP [Bacillus pumilus SAFR-032]
gi|157682069|gb|ABV63213.1| response regulator PhoP [Bacillus pumilus SAFR-032]
Length = 242
Score = 167 bits (424), Expect = 5e-40, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L +AGY+VV+ +G A +K E L++ D+++P+MD
Sbjct: 1 MNKKILVVDDEESIVTLLSYNLERAGYDVVTARDGEEALEKAASEQPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRIQKMMFPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVGARVKAILRR 120
>gi|319779219|ref|YP_004130132.1| Two-component system response regulator OmpR [Taylorella
equigenitalis MCE9]
gi|317109243|gb|ADU91989.1| Two-component system response regulator OmpR [Taylorella
equigenitalis MCE9]
Length = 247
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD +R L K L + GY V + +G + E F++++ DI++P DG
Sbjct: 8 NKKILVVDDDPRLRELLKKYLTEQGYTVTAVEDGKEMSKACQRENFNIIVLDIMLPGEDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + RR + ++ +T + + KPF+ R+L+ +N +L
Sbjct: 68 LSICRRLRATNDMTPIIMLTAKSEDIDRIIGLEMGADDYIVKPFNPRELLARINAVLRR 126
>gi|169344709|ref|ZP_02630248.2| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|169297144|gb|EDS79259.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
Length = 231
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|271961733|ref|YP_003335929.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270504908|gb|ACZ83186.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 231
Score = 167 bits (424), Expect = 6e-40, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + + L + G+ V +GA A + +P LL+ D+++P+MD
Sbjct: 1 MSARILVVDDDPTVAEVVARYLERDGHVVECVGDGAEALRRALSDPPDLLVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ E P + V+ +T ++KPF R+L V +L
Sbjct: 61 GLQVCRKLRERWP-VPVIMLTALGEEIDRVVGLETGADDYVTKPFSPRELALRVQSVLRR 119
>gi|168214874|ref|ZP_02640499.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|170713701|gb|EDT25883.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
Length = 231
Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKIIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|284048184|ref|YP_003398523.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
gi|283952405|gb|ADB47208.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
Length = 232
Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ +L+A+D+ +R L K G++V+ +GA A +V+ ++L DI+MP
Sbjct: 1 MNKQQTVLIADDEPQIREILSIYFKKEGFKVIEAADGAEALVQVQAGKPDIILLDIMMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ ++ ++ D+ ++ +T + +SKPF+ R++V V +L
Sbjct: 61 LDGLEVCKQVRKI-SDIPIIMLTAKDSDDDRILGLEIGADDYISKPFNTREVVARVKAVL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRTN 123
>gi|86739037|ref|YP_479437.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86565899|gb|ABD09708.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 406
Score = 166 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +G A R+ ++ DI++P+MDG+E
Sbjct: 160 RVLVVDDETTLAELLSMALRYEGWEVRSAADGRGALRLARDFRPDAVVLDIMLPDMDGLE 219
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR PD+ V+F+T AV ++KPF L +LV + L+
Sbjct: 220 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 276
>gi|311069407|ref|YP_003974330.1| two-component response regulator [Bacillus atrophaeus 1942]
gi|310869924|gb|ADP33399.1| two-component response regulator [Bacillus atrophaeus 1942]
Length = 240
Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D++ + L L ++GYEVV+ ++G A + E L++ D+++P++D
Sbjct: 1 MSKKILVVDDEESIVTLLQYNLERSGYEVVTASDGEEALKQAETEKPDLIVLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|18309624|ref|NP_561558.1| DNA-binding response regulator [Clostridium perfringens str. 13]
gi|18144301|dbj|BAB80348.1| two-component response regulator [Clostridium perfringens str. 13]
Length = 231
Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALKVIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|168218156|ref|ZP_02643781.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|182379830|gb|EDT77309.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 231
Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY+ NG A + +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDTEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|229009103|ref|ZP_04166437.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock1-4]
gi|228752157|gb|EEM01850.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides Rock1-4]
Length = 237
Score = 166 bits (423), Expect = 7e-40, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I + ED+D++R + L GYEV + NG ++ ++ L++ D++MP+ D
Sbjct: 1 MTTRIAIIEDEDNIREICKRYLESEGYEVYTAENGEEGWNLFQQYQPDLIVLDLMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T A ++KPF R+LV V LL
Sbjct: 61 GWELCEEIRQ-HSNVPIIILTARAEERDRILGLTIGADDYVTKPFSPRELVLRVQILLRR 119
Query: 121 KN 122
N
Sbjct: 120 GN 121
>gi|288561544|ref|YP_003428950.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
gi|288548176|gb|ADC52058.1| response regulator receiver protein [Bacillus pseudofirmus OF4]
Length = 231
Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ +MR + L K GY +V NG A +++ F L++ D++MPEMD
Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + L ++ +T L+KPF +L+ VN LL
Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRR 120
>gi|298246544|ref|ZP_06970350.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554025|gb|EFH87890.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 244
Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L +AGY V++ +G SA D R E L++ DI++P MD
Sbjct: 1 MARKILVVDDEAVLAETIAYNLEQAGYHVITAADGNSALDAARSERPDLIVLDIMLPGMD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R+ + ++ +T ++KPF R+L+ V L+
Sbjct: 61 GLEVCRQLRRENKTATTPILMLTARGDEIDKVVGLEVGADDYVTKPFGRRELLARVRALI 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|302389531|ref|YP_003825352.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
gi|302200159|gb|ADL07729.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
Length = 232
Score = 166 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ ++ + L +G++V++ ++G A D V++E L++ DI++P +DG
Sbjct: 3 KEKILVVDDEPNIVELVRFNLENSGFKVITASDGQQALDLVQKEQPDLVILDIMLPGIDG 62
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R D+ V+ +T ++KPF R+LV V +L
Sbjct: 63 LEVCRIFRRQRATRDIPVILLTAKTEEIDKVLGLEMGADDYITKPFSPRELVARVKAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|329937264|ref|ZP_08286863.1| response regulator [Streptomyces griseoaurantiacus M045]
gi|329303545|gb|EGG47431.1| response regulator [Streptomyces griseoaurantiacus M045]
Length = 277
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L +AGY V +G +A D+ L++ D+++P MDG+E
Sbjct: 21 RILVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPAALDRAAAHRPDLVVLDLMLPGMDGLE 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+ +T ++KPF R+LV V +L
Sbjct: 81 VCRRLRENGP-VPVVMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVQSVLRR 136
>gi|110801877|ref|YP_697936.1| DNA-binding response regulator [Clostridium perfringens SM101]
gi|110682378|gb|ABG85748.1| DNA-binding response regulator [Clostridium perfringens SM101]
Length = 231
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +D++ +R + L K GY++ NG A + +RE F L+L D+++PE+DG
Sbjct: 3 NKKVLIVDDEEHIRELIKFNLKKEGYDIEVAVNGTEALNIIREIKFDLILLDLMLPEIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + E D+ VM IT ++KPF +R+L+ V LL
Sbjct: 63 LEVCKEIRRNEETSDIPVMMITAKGEEFDKVLGLELGADDYITKPFSIRELMARVKALLR 122
Query: 120 IKN 122
N
Sbjct: 123 RSN 125
>gi|28210824|ref|NP_781768.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28203262|gb|AAO35705.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 232
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q KIL+ +D++ +R L L K GY++ NG A + +E+ +L+L D+++P+M
Sbjct: 1 MSQDKILIVDDEEHIRELLRYNLEKEGYKIFCAENGKEALEIAKEKKPTLILLDVMLPQM 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + + ++ IT ++KPF +R+L+ + +
Sbjct: 61 DGYDVCKEIRKDNSISTTPIIMITAKGEELDKVLGLELGADDYITKPFSIRELIARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|220930753|ref|YP_002507662.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|220001081|gb|ACL77682.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 230
Score = 166 bits (422), Expect = 9e-40, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ ++ L L K GY+ + +G A + + L+L DI++P+MD
Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQSPDLILLDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ + ++ +T ++KPF R+L+ V L
Sbjct: 61 GFTVCRKLRQSIS-TPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119
>gi|227514133|ref|ZP_03944182.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
gi|227087504|gb|EEI22816.1| DNA-binding response regulator [Lactobacillus fermentum ATCC 14931]
Length = 245
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + L K GYEVV +G A KV E L++ D+++P++D
Sbjct: 11 MDKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A++ ++ +T + ++KPF R+LV V L
Sbjct: 71 GLEVAKQVRAKRS-TPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 129
Query: 121 KN 122
++
Sbjct: 130 QD 131
>gi|257455895|ref|ZP_05621112.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
gi|257446641|gb|EEV21667.1| osmolarity response regulator [Enhydrobacter aerosaccus SK60]
Length = 257
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ+IL+ +DD +R L + L GY V + ++G+ ++ E FSL++ D+++P D
Sbjct: 21 MNQRILVVDDDARLRTLLQRFLEDDGYIVRTAHDGSQMDKLMQRELFSLIVLDLMLPNED 80
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + R + D+ ++ +T + A L KPF+ ++L+ + +L
Sbjct: 81 GISICHRLRAENSDIPIIMLTAKGSDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRR 140
Query: 121 K 121
+
Sbjct: 141 Q 141
>gi|172056682|ref|YP_001813142.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171989203|gb|ACB60125.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 228
Score = 166 bits (422), Expect = 1e-39, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ MR L+ L K Y+ + +NG A D ++ + F L+L D++MPEMDG+
Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R E ++ ++ +T + ++KPF R+L+ + L +
Sbjct: 67 ACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSH 124
>gi|222151385|ref|YP_002560541.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
gi|222120510|dbj|BAH17845.1| response regulator protein [Macrococcus caseolyticus JCSC5402]
Length = 235
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+D +R+ L + GYE V +G A + E F +L DI++P MD
Sbjct: 1 MKEKILIVDDEDRIRKLAKMYLEREGYETVEAEDGERALELALSENFHCILLDIMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ +R E V+ +T + + KPF R++V V +L
Sbjct: 61 GIQVCKRLREEKS-TPVIMLTAKGEEHNRVEGFEIGADDYIVKPFSPREVVLRVKAILRR 119
>gi|205374546|ref|ZP_03227342.1| response regulator PhoP [Bacillus coahuilensis m4-4]
Length = 238
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L +AGY V++ N+G Y+ + ++ D+++P+MD
Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYTVLTANDGEEGYELAMSDKPDFIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V + +L
Sbjct: 61 GIEVCKNLRQQKMMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARIKAILRR 120
>gi|163814591|ref|ZP_02205980.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
gi|158450226|gb|EDP27221.1| hypothetical protein COPEUT_00742 [Coprococcus eutactus ATCC 27759]
Length = 245
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +DD+++ + L K YE +G A E L+L D+++P M
Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ + + ++ ++ V + KPF +LV V LL
Sbjct: 61 DGYQVCTEIRK-TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|156744350|ref|YP_001434479.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156235678|gb|ABU60461.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 229
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L L G+ V+ +GA VR++ L++ D++MPEMDG
Sbjct: 7 RRILIVDDEPGLRDLLRINLEHEGFSVIEAESGAQGLQMVRDQHPDLMILDVMMPEMDGW 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E + V+ +T L+KPF++ +L + LL
Sbjct: 67 EVCRRLRE-FSQMPVLMLTARTQSKDIVTGLESGADDYLTKPFNMDELTARIRALLRR 123
>gi|154498537|ref|ZP_02036915.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
29799]
gi|150272605|gb|EDM99790.1| hypothetical protein BACCAP_02527 [Bacteroides capillosus ATCC
29799]
Length = 234
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ ED+ ++ L LG+ GYE + +G S E+ L+L D+++P+M+
Sbjct: 1 MNKRILIVEDEKNIVDILSFNLGREGYETLEAYDGQSGLQLALEQDPDLVLLDLMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + V+ +T ++KPF +R+L+ V +
Sbjct: 61 GFDVCRSIRAEGKNTPVIMLTAREEENDKVMGLELGADDYITKPFSMRELLARVKANIRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|295402148|ref|ZP_06812107.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312112732|ref|YP_003991048.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294975831|gb|EFG51450.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311217833|gb|ADP76437.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 235
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P+ D
Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIILTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR 119
Query: 121 KN 122
+
Sbjct: 120 HS 121
>gi|229542343|ref|ZP_04431403.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229326763|gb|EEN92438.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 236
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GY V +G A +KV E L++ DI++P+ D
Sbjct: 1 MDKKILVVDDEKPIADILQFNLTKEGYTVYCAYDGEEALEKVEEVQPDLIVLDIMLPKRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-NMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|52082613|ref|YP_081404.1| putative two-component response regulator YycF [Bacillus
licheniformis ATCC 14580]
gi|52788011|ref|YP_093840.1| YycF [Bacillus licheniformis ATCC 14580]
gi|319648478|ref|ZP_08002694.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
gi|52005824|gb|AAU25766.1| putative two-component response regulator YycF [Bacillus
licheniformis ATCC 14580]
gi|52350513|gb|AAU43147.1| YycF [Bacillus licheniformis ATCC 14580]
gi|317389557|gb|EFV70368.1| transcriptional regulatory protein yycF [Bacillus sp. BT1B_CT2]
Length = 235
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K GYEV +G A V + ++L DI++P D
Sbjct: 1 MEKKILVVDDEKPIADILEFNLKKEGYEVHCAYDGNEALQMVEDLNPDMILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 KN 122
+N
Sbjct: 120 QN 121
>gi|268316550|ref|YP_003290269.1| two component transcriptional regulator, winged helix family
[Rhodothermus marinus DSM 4252]
gi|262334084|gb|ACY47881.1| two component transcriptional regulator, winged helix family
[Rhodothermus marinus DSM 4252]
Length = 233
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ EDD +R L + L GY V + G A + P L++ D+++P MD
Sbjct: 1 MSARILIVEDDTPLRALLQERLAAEGYAVEAVATGEEALQALEARPPDLVVLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR P + V+ +T ++ ++KPF L +LV V L
Sbjct: 61 GLEVCRRLRARHPAVYVLMLTARSSELDRVVGLEVGADDYVTKPFSLNELVARVRAGLRR 120
>gi|324325416|gb|ADY20676.1| response regulator [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 223
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|288554258|ref|YP_003426193.1| winged helix family two component transcriptional regulator
[Bacillus pseudofirmus OF4]
gi|288545418|gb|ADC49301.1| two component transcriptional regulator, winged helix family
[Bacillus pseudofirmus OF4]
Length = 229
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +IL+ ED+ MR L L K GY V G A +KV + +S++L D++MPEM
Sbjct: 1 MKEIRILIVEDEAPMRELLQLYLRKEGYVVDEAITGIEALEKVEKTLYSVVLLDVMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R ++ + V+ +T L+KPF +L+ V +L
Sbjct: 61 DGFEVCREIRKV-SQVPVIMLTARTQTLDKVKGLKIGADDYLTKPFEQEELLARVEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|126651382|ref|ZP_01723589.1| PhoP [Bacillus sp. B14905]
gi|126591911|gb|EAZ85994.1| PhoP [Bacillus sp. B14905]
Length = 238
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + L L +AGY V + +G +K E +L+L D+++P++D
Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIEIQPNLILLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + + ++ +T ++KPF R+++ V +L
Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120
>gi|307149957|ref|YP_003885341.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306980185|gb|ADN12066.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 242
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTNPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|206967625|ref|ZP_03228581.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|206736545|gb|EDZ53692.1| DNA-binding response regulator [Bacillus cereus AH1134]
Length = 223
Score = 165 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +LV + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|226310980|ref|YP_002770874.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093928|dbj|BAH42370.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 231
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + L L K+G++VV+ +G A + V+ E ++ D+++P+MDG++
Sbjct: 3 KVLVVDDEASIVKLLQFNLEKSGFQVVTAFDGKQALEVVKSEQPDFIILDLMLPKMDGMD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T L+KPF R+++ V +L
Sbjct: 63 VCKTLRQERNNTPILMLTAKDDELDKILGLELGADDYLTKPFSPREVIARVKAILRR 119
>gi|320161338|ref|YP_004174562.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319995191|dbj|BAJ63962.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 239
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD + RFL L +EV++ NNG A +E L++ D++MP MD
Sbjct: 1 MKPKVLIVDDDPTLLRFLQDFLRAEAFEVLAANNGHEALKLAYQEHPDLVVLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R EL D+ ++ +T + L+KPF +L + +L
Sbjct: 61 GWEVCSRLHEL-SDIPIILLTAKTSEQDKLRGFQLGVDDYLTKPFSFAELAARIRAILAR 119
>gi|163846454|ref|YP_001634498.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222524229|ref|YP_002568700.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163667743|gb|ABY34109.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222448108|gb|ACM52374.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 233
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + + L +AG++V+S +G +A R+E +L++ D+++P MD
Sbjct: 1 MSRTILVVDDEPGIVKIARDYLERAGFQVISAGDGPTALRLARQEHPALMVLDLMLPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R + L L ++ +T ++KPF R+LV V +L
Sbjct: 61 GLDVTRALRQDPLTARLPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|304406662|ref|ZP_07388317.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304344195|gb|EFM10034.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+I + +DD+ + L ++L GYEV N+G + + LL+ D++MP+MD
Sbjct: 1 MRQRIFVVDDDEKITSLLRRSLAFEGYEVTIANDGQEGLKLMGQSDPDLLILDVMMPQMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + V+ +T V L KPF L +L+ V LL
Sbjct: 61 GWEVCRRVREAGSGVPVLMLTAMDDVQDRVKGLDLGADDYLVKPFALEELLARVRALLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|261409749|ref|YP_003245990.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261286212|gb|ACX68183.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 232
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M
Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGVDALEAYRSQEVDLILLDVMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL RR D V+ +T ++V ++KPF + +L+ + L +
Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|311031361|ref|ZP_07709451.1| two-component response regulator PhoP [Bacillus sp. m3-13]
Length = 242
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + L L +AGY+V +G +K EE F +++ D+++P+ D
Sbjct: 1 MNKKILIVDDEQSIVTLLQYNLQQAGYDVSVAMDGEEGLNKAMEERFDMIVLDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKELRQHKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|326202264|ref|ZP_08192133.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987382|gb|EGD48209.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 232
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ ++ L L K GY+ + +G A + + L+L DI++P+MD
Sbjct: 1 MSKKILIVDDEKNIVDILKFNLKKEGYDTIEAYDGEEAVNLALSQNPDLILLDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ + ++ +T ++KPF R+L+ V L
Sbjct: 61 GFTVCRKLRQSIS-TPILMLTAKEEEVDKVLGLELGADDYITKPFSPRELMARVKANLRR 119
>gi|239617306|ref|YP_002940628.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
gi|239506137|gb|ACR79624.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
Length = 221
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL EDD +R+F+ L GYEV + G A D++ +E ++L D+++PEM+
Sbjct: 1 MKAKVLLVEDDPHIRKFIQLELEHEGYEVKTAVTGPQALDELEKELPDVVLLDVMLPEMN 60
Query: 61 GIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + R E +L V+ +T + + KPFH+ +L+ + +L
Sbjct: 61 GFTVLERIREDFSTELPVIMLTARGELEDRVRGLKSGADDYIVKPFHIEELLARLEAVLR 120
Query: 120 IK 121
K
Sbjct: 121 RK 122
>gi|184154491|ref|YP_001842831.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
gi|260662552|ref|ZP_05863447.1| two-component system response regulator [Lactobacillus fermentum
28-3-CHN]
gi|183225835|dbj|BAG26351.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
gi|260553243|gb|EEX26186.1| two-component system response regulator [Lactobacillus fermentum
28-3-CHN]
Length = 235
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + L K GYEVV +G A KV E L++ D+++P++D
Sbjct: 1 MAKKVLVVDDEKPISDIIKFNLEKEGYEVVVAYDGEEALQKVESESPDLIVLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A++ ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAKQVRAKRS-TPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|255326659|ref|ZP_05367735.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Rothia mucilaginosa ATCC 25296]
gi|283457339|ref|YP_003361914.1| response regulator [Rothia mucilaginosa DY-18]
gi|255295876|gb|EET75217.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Rothia mucilaginosa ATCC 25296]
gi|283133329|dbj|BAI64094.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Rothia mucilaginosa
DY-18]
Length = 234
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP
Sbjct: 1 MSAEAKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREALEKAHAENPDLIVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ RR E V+F+T A ++KPF L +++ + +L
Sbjct: 61 MDGFEVTRRLRENGTTTPVLFLTAKDATEDKVTGLGAGGDDYVTKPFSLDEVIARIRAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|16081093|ref|NP_391921.1| two-component response regulator YycG [Bacillus subtilis subsp.
subtilis str. 168]
gi|586808|sp|P37478|YYCF_BACSU RecName: Full=Transcriptional regulatory protein yycF
gi|467327|dbj|BAA05173.1| unknown [Bacillus subtilis]
gi|1064814|dbj|BAA11300.1| yycF [Bacillus subtilis]
gi|2636588|emb|CAB16078.1| two-component response regulator [YycG] [Bacillus subtilis subsp.
subtilis str. 168]
Length = 235
Score = 165 bits (420), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|332653701|ref|ZP_08419445.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
gi|332516787|gb|EGJ46392.1| DNA-binding response regulator YycF [Ruminococcaceae bacterium D16]
Length = 237
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+ ++ L L + GY+ + +G + E+ L+L D+++P MD
Sbjct: 1 MGKTVLIVEDEQNIVDILSFNLEREGYDTLEAYDGNTGLQLALEQNPDLVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + ++ +T A ++KPF +R+L+ V +
Sbjct: 61 GFEVCRRIRETGSAVPILMLTAREEEADKVLGLELGADDYITKPFGMRELLARVKANIRR 120
>gi|297583655|ref|YP_003699435.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297142112|gb|ADH98869.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 238
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +D++ + L L +AG+E V+ +G +AYD ++ F L++ D+++PEMD
Sbjct: 1 MTQRILIVDDEESILTLLQYNLDQAGFETVTAEDGKTAYDLAADDSFDLIVLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + +L ++ +T L+KPF R++V V +L
Sbjct: 61 GLEVCKSLRQLKVSTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRR 120
>gi|42780487|ref|NP_977734.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|206977570|ref|ZP_03238464.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217958874|ref|YP_002337422.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|222095033|ref|YP_002529093.1| response regulator [Bacillus cereus Q1]
gi|42736406|gb|AAS40342.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|206744288|gb|EDZ55701.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217068126|gb|ACJ82376.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|221239091|gb|ACM11801.1| response regulator [Bacillus cereus Q1]
Length = 223
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM
Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|256848492|ref|ZP_05553934.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
gi|256714759|gb|EEU29738.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
Length = 235
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ + + L K GYEVV+ +G +KV + L++ D+++P++D
Sbjct: 1 MANKVLVVDDEKPISDIIKFNLEKEGYEVVTAFDGEEGLEKVESDQPDLIILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R + ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAKRVRAKH-NTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|225174148|ref|ZP_03728147.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225169933|gb|EEG78728.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 231
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ +R + L K G+ V +G A K + L++ D+++P++DG ++
Sbjct: 6 ILIVDDEEHIRELVRLYLEKEGFTVALAADGEEAVQKAKSTTPQLIILDLMLPKLDGWDV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++ +T L+KPF R+LV V +L
Sbjct: 66 CREVRK-FSEVPIIMLTAKGEEFDKVLGLELGADDYLTKPFSPRELVARVKAILRR 120
>gi|56422009|ref|YP_149327.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|297531668|ref|YP_003672943.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|56381851|dbj|BAD77759.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|297254920|gb|ADI28366.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 237
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D
Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|37522238|ref|NP_925615.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35213238|dbj|BAC90610.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 245
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + E L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFSREHPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|47566185|ref|ZP_00237213.1| two-component response regulator [Bacillus cereus G9241]
gi|47556738|gb|EAL15069.1| two-component response regulator [Bacillus cereus G9241]
Length = 223
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|321312445|ref|YP_004204732.1| two-component response regulator [Bacillus subtilis BSn5]
gi|320018719|gb|ADV93705.1| two-component response regulator [Bacillus subtilis BSn5]
Length = 240
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|11467627|ref|NP_050679.1| Ycf27 [Guillardia theta]
gi|6136611|sp|O78428|YCF27_GUITH RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|3602952|gb|AAC35613.1| ompR homolog [Guillardia theta]
Length = 254
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D+ +R+ L L GY VV+ ++G A + +E +++ DI+MP++DG
Sbjct: 14 KEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 74 YGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRT 132
Query: 122 N 122
N
Sbjct: 133 N 133
>gi|318081143|ref|ZP_07988475.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 327
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E
Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+ +T ++KPF R+LV V +L
Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133
>gi|143328|gb|AAA22661.1| phoP protein (put.); putative [Bacillus subtilis]
Length = 241
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|261420883|ref|YP_003254565.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319768554|ref|YP_004134055.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261377340|gb|ACX80083.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317113420|gb|ADU95912.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 237
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D
Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|158338202|ref|YP_001519379.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158308443|gb|ABW30060.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 249
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ +RR L L GYE+V +G A ++ E L++ D++MP M+G+
Sbjct: 5 HKILIVDDEATIRRILATRLSMVGYEIVVAADGVEALEQFEAEKPDLIVLDVMMPRMNGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + E + ++ +T V+ L KPF ++L + + +L
Sbjct: 65 QVCQTLREST-GVPIIMLTALGEVSDRIKGLELGADDYLPKPFSPKELESRIQAILRR 121
>gi|221310852|ref|ZP_03592699.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
gi|221315178|ref|ZP_03596983.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221320095|ref|ZP_03601389.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221324377|ref|ZP_03605671.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. SMY]
gi|255767672|ref|NP_390789.2| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
gi|251757501|sp|P13792|PHOP_BACSU RecName: Full=Alkaline phosphatase synthesis transcriptional
regulatory protein phoP
gi|40056|emb|CAA47908.1| phoP [Bacillus subtilis]
gi|225185300|emb|CAB14871.2| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
gi|291485344|dbj|BAI86419.1| two-component response regulator [Bacillus subtilis subsp. natto
BEST195]
Length = 240
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|218441116|ref|YP_002379445.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218173844|gb|ACK72577.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 247
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRQTSPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|212638357|ref|YP_002314877.1| OmpR family DNA-binding response regulator [Anoxybacillus
flavithermus WK1]
gi|212559837|gb|ACJ32892.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
[Anoxybacillus flavithermus WK1]
Length = 261
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +D+ + L L +AG+ V++ +G K EE ++ D+++P++D
Sbjct: 24 MSKRVLVVDDEQSIVTLLEYNLKQAGFIVLTAYDGEEGLHKALEERPDFIILDLMLPKLD 83
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 84 GIEVCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 143
>gi|296332101|ref|ZP_06874565.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675504|ref|YP_003867176.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150872|gb|EFG91757.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413748|gb|ADM38867.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 240
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|209527854|ref|ZP_03276344.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209491711|gb|EDZ92076.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 243
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFRQTEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|169826328|ref|YP_001696486.1| putative sensory transduction protein [Lysinibacillus sphaericus
C3-41]
gi|168990816|gb|ACA38356.1| Hypothetical sensory transduction protein [Lysinibacillus
sphaericus C3-41]
Length = 229
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ R L L GYE V + GA + REE + L+L DI++PEM
Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVIAHTGADGLLQYREEQWDLILLDIMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ +R + V+ +T + V ++KPF + +L+ + L
Sbjct: 61 GIDVLKRIRATESKTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119
>gi|311070584|ref|YP_003975507.1| YycF protein [Bacillus atrophaeus 1942]
gi|310871101|gb|ADP34576.1| YycF [Bacillus atrophaeus 1942]
Length = 236
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV +G A + V E L+L DI++P D
Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEAVEMVEEIQPDLILLDIMLPNKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|2293270|gb|AAC00348.1| signal transduction regulator [Bacillus subtilis]
Length = 240
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120
>gi|329923390|ref|ZP_08278872.1| response regulator MprA [Paenibacillus sp. HGF5]
gi|328941282|gb|EGG37576.1| response regulator MprA [Paenibacillus sp. HGF5]
Length = 232
Score = 164 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + R L L GY+V +NG A + R + L+L D+++P M
Sbjct: 1 MSGKILIVEDEAKISRLLEIELESEGYQVTKADNGLDALEAYRSQEVDLILLDVMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL RR D V+ +T ++V ++KPF + +L+ + L +
Sbjct: 61 GIELLRRIRAHDSHTAVLLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|221312018|ref|ZP_03593865.1| hypothetical protein Bsubs1_21806 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316343|ref|ZP_03598148.1| hypothetical protein BsubsN3_21712 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321256|ref|ZP_03602550.1| hypothetical protein BsubsJ_21665 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325539|ref|ZP_03606833.1| hypothetical protein BsubsS_21821 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|296329976|ref|ZP_06872460.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676701|ref|YP_003868373.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|321313602|ref|YP_004205889.1| two-component response regulator [Bacillus subtilis BSn5]
gi|291486678|dbj|BAI87753.1| hypothetical protein BSNT_06200 [Bacillus subtilis subsp. natto
BEST195]
gi|296153015|gb|EFG93880.1| two-component response regulator (YycG) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414945|gb|ADM40064.1| two-component response regulator (paired with YycG) [Bacillus
subtilis subsp. spizizenii str. W23]
gi|320019876|gb|ADV94862.1| two-component response regulator [Bacillus subtilis BSn5]
Length = 236
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D
Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|295094559|emb|CBK83650.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus sp.
ART55/1]
Length = 244
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +DD+++ + L K YE +G A E L+L D+++P M
Sbjct: 1 MSKNNILIVDDDENIAELISLYLNKECYETEIAASGTEALQLFEEYSPDLVLLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ + + ++ ++ V + KPF +LV V LL
Sbjct: 61 DGYQVCTEIRK-TSNTPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|239828688|ref|YP_002951312.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239808981|gb|ACS26046.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 236
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P+ D
Sbjct: 2 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEEVMPDLILLDIMLPQKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVRANLRR 120
>gi|138897044|ref|YP_001127497.1| two-component response regulater [Geobacillus thermodenitrificans
NG80-2]
gi|196249865|ref|ZP_03148561.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134268557|gb|ABO68752.1| Two-component response regulater [Geobacillus thermodenitrificans
NG80-2]
gi|196210741|gb|EDY05504.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 237
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G A KV E L+L DI++P D
Sbjct: 1 MEKRILVVDDEKPIADILQFNLQKEGYEVICAYDGEEALQKVEETMPDLILLDIMLPLKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|126652912|ref|ZP_01725055.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
gi|126590332|gb|EAZ84453.1| hypothetical protein BB14905_20830 [Bacillus sp. B14905]
Length = 229
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ R L L GYE V + GA + RE+ + L+L DI++PEM
Sbjct: 1 MSNRILIIEDEENIARVLQLELQFEGYEAVMAHTGADGLLQYREQQWDLILLDIMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ +R + V+ +T + V ++KPF + +L+ + L
Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNALR 119
>gi|319651813|ref|ZP_08005938.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
gi|317396465|gb|EFV77178.1| PhoP protein [Bacillus sp. 2_A_57_CT2]
Length = 238
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L +AGYEV++ +G D E L++ D+++P++D
Sbjct: 1 MDKKILVVDDEQSIVTLLQYNLQQAGYEVITAMDGQEGKDLAISEKPDLIVLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKQLRQQKIATPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|299535466|ref|ZP_07048788.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Lysinibacillus fusiformis ZC1]
gi|298729227|gb|EFI69780.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Lysinibacillus fusiformis ZC1]
Length = 238
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + L L +AGY V + +G +K + +L+L D+++P++D
Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYVVETAADGQEGLEKAIDLQPNLILLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + + ++ +T ++KPF R+++ V +L
Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120
>gi|157694431|ref|YP_001488893.1| response regulator [Bacillus pumilus SAFR-032]
gi|194016445|ref|ZP_03055059.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
gi|157683189|gb|ABV64333.1| response regulator [Bacillus pumilus SAFR-032]
gi|194011918|gb|EDW21486.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
Length = 235
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K GYEV +G A + V E ++L DI++P D
Sbjct: 1 MEKKILVVDDEKPIADILEFNLRKEGYEVHCAYDGNEALEMVEEIKPDIILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLELGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|284993022|ref|YP_003411576.1| winged helix family two component transcriptional regulator
[Geodermatophilus obscurus DSM 43160]
gi|284066267|gb|ADB77205.1| two component transcriptional regulator, winged helix family
[Geodermatophilus obscurus DSM 43160]
Length = 240
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + +G A LL+ D++MP +DG
Sbjct: 13 RLLVVDDEPNIRELLSASLRYAGFEVATAADGHQALAMAASFRPDLLVLDVMMPGLDGFG 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+F+T A ++KPF L +++ + +L
Sbjct: 73 VVRRLRESGRHTPVLFLTARDAAEDKVSGLTLGGDDYVTKPFSLDEVLARIRAVLRR 129
>gi|149182828|ref|ZP_01861289.1| two-component response regulator [Bacillus sp. SG-1]
gi|148849443|gb|EDL63632.1| two-component response regulator [Bacillus sp. SG-1]
Length = 239
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L +AGY V++ ++G D EE L++ D+++P++D
Sbjct: 1 MSKKILVVDDEQSIVTLLKYNLEQAGYSVITAHDGEEGRDLALEEVPDLMILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + + ++ +T ++KPF R+++ V +L
Sbjct: 61 GIEVCKQIRQQKVMIPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVMARVKAILRR 120
>gi|325289942|ref|YP_004266123.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324965343|gb|ADY56122.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 232
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+K IL+ ED++ +RRF+ L AGY V +G A DK++ +++ DI++P
Sbjct: 1 MNRKKIKILVVEDEESIRRFITLNLNAAGYLVSEAVSGEEALDKLKMLDPDIVVLDIMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DG E+ + P+ +V+ +T + KPF+ +L + +
Sbjct: 61 GIDGFEVCQHICATMPETRVIMLTARGQDTDKILGLELGADDYIVKPFNPIELTARIKAV 120
Query: 118 LTIKN 122
L +N
Sbjct: 121 LRRRN 125
>gi|323140625|ref|ZP_08075549.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
YIT 12067]
gi|322414889|gb|EFY05684.1| transcriptional regulatory protein ResD [Phascolarctobacterium sp.
YIT 12067]
Length = 234
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+A+D+ +R L K G+EV+ +GA+A KV+ E +LL DI+MP +DG
Sbjct: 5 KQKILIADDEAQIREILRIYFEKEGFEVIEAEDGAAAILKVQSEKPDILLLDIMMPVLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ ++ ++ DL ++ +T ++KPF+ R++V V +L
Sbjct: 65 IEVCKQVRKM-SDLPIIMVTAKDDDDDRIAGLEIGADDYITKPFNSREVVARVKAVLRR 122
>gi|296501980|ref|YP_003663680.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|296323032|gb|ADH05960.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 223
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +LV + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|169829556|ref|YP_001699714.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Lysinibacillus sphaericus C3-41]
gi|168994044|gb|ACA41584.1| Alkaline phosphatase synthesis transcriptional regulatory protein
[Lysinibacillus sphaericus C3-41]
Length = 238
Score = 164 bits (418), Expect = 3e-39, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + L L +AGY V + +G +K + +L+L D+++P++D
Sbjct: 1 MTKTILVIEDEFSIATLLKYNLEQAGYLVETAADGQEGLEKAIDIQPNLILLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + + ++ +T ++KPF R+++ V +L
Sbjct: 61 GMEVCKQIRQQRMNTPIIMLTAKDDEFDKVLGLELGADDYMTKPFSPREVLARVKAVLRR 120
>gi|315646392|ref|ZP_07899510.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315278035|gb|EFU41355.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 238
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P
Sbjct: 1 MSEHGNRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG+E+ R ++ ++ +T + KPF R+++ V +
Sbjct: 61 GMDGVEVCTRLRQVKS-TPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAI 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRSS 124
>gi|259502101|ref|ZP_05745003.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
gi|312868802|ref|ZP_07728991.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus oris PB013-T2-3]
gi|259169914|gb|EEW54409.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
gi|311095645|gb|EFQ53900.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus oris PB013-T2-3]
Length = 235
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEVV +G A +KV E L++ D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEAEDPDLIILDLMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 E 120
>gi|95929117|ref|ZP_01311862.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
gi|95135018|gb|EAT16672.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
Length = 231
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ ED++D+ + L + G+EV + G ++ R+E L++ D+++P MD
Sbjct: 1 MNKNILIVEDEEDILALVHYNLSRDGFEVTTATTGEDGVEQARKEHPDLMILDLMLPGMD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + D+ ++ +T + A ++KPF + L+ V +L
Sbjct: 61 GLEVCETLKKDRELRDIPIVMLTAKGEESDIVKGLEMGAADYVTKPFSPKVLLARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|56965856|ref|YP_177590.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56912102|dbj|BAD66630.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 236
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + L L K G++V +G A ++V+E L+L DI++P D
Sbjct: 1 MDKHILVVDDEKSIADILKFNLEKEGFDVTCAYDGNEALERVKERKPDLMLLDIMLPYKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + DL ++ +T + + KPF R+L+ V L
Sbjct: 61 GMEVCREVRKQY-DLPIIMLTAKDSEIDKVLGLELGADDYVIKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|222152735|ref|YP_002561912.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus uberis 0140J]
gi|222113548|emb|CAR41347.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus uberis 0140J]
Length = 240
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D++ + R L L K GYE +G +A E + +L DI++P++D
Sbjct: 1 MKKHILLVDDEEHILRLLDYHLKKEGYETDLAEDGRTALKLAESEHYDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + ++KPF R+L+ + +L
Sbjct: 61 GIEVCKRIRSKGNKTPIMMVSAKGEEFDKVLALELGADDYMTKPFSPRELIARLKAILRR 120
>gi|229099893|ref|ZP_04230816.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-29]
gi|229106054|ref|ZP_04236673.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-28]
gi|229118956|ref|ZP_04248301.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-3]
gi|228664481|gb|EEL19977.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-3]
gi|228677373|gb|EEL31631.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-28]
gi|228683508|gb|EEL37463.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-29]
Length = 234
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-NSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|220906550|ref|YP_002481861.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219863161|gb|ACL43500.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 243
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY VV+ +G A + REE L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYNVVTAADGEEALETFREEVPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|302535811|ref|ZP_07288153.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302444706|gb|EFL16522.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 244
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 54/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GYEV + +G A D+ L++ DI MP MDG+
Sbjct: 9 QRILVVDDEPAVREALRRSLAFEGYEVRTAVDGLDALDQAAAYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR V+ +T V L KPF L +L V LL +
Sbjct: 69 TAARRLRASGSVTPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 128
>gi|212640658|ref|YP_002317178.1| OmpR family DNA-binding response regulator [Anoxybacillus
flavithermus WK1]
gi|212562138|gb|ACJ35193.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
[Anoxybacillus flavithermus WK1]
Length = 236
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K GY+V +G A KV + L+L DI++P+ D
Sbjct: 3 MEKKILVVDDEKPIADILQFNLRKEGYDVHCAYDGVEALQKVEDIQPDLILLDIMLPQKD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 63 GMEVCREIRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 121
>gi|317128535|ref|YP_004094817.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315473483|gb|ADU30086.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 238
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q KIL+ +D++ +RR L L + Y+V NG A E + L++ D++MP
Sbjct: 1 MSQDAKILVVDDEERIRRLLKMYLEREDYDVDDAENGEKALKMALENEYDLIVLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DGIE+ + ++ +T A + KPF R++V V LL
Sbjct: 61 IDGIEVCEEIRK-HKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|228905410|ref|ZP_04069365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 4222]
gi|228968616|ref|ZP_04129601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar sotto str. T04001]
gi|228791108|gb|EEM38725.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar sotto str. T04001]
gi|228854230|gb|EEM98933.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 4222]
Length = 234
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|111220170|ref|YP_710964.1| putative two-component system response regulator [Frankia alni
ACN14a]
gi|111147702|emb|CAJ59359.1| Putative two-component system response regulator (partial match)
[Frankia alni ACN14a]
Length = 358
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +G A RE ++ DI++P+MDG+E
Sbjct: 20 RVLVVDDETTLAELLSMALRYEGWEVRSAGDGRGALRLAREFRPDAVVLDIMLPDMDGLE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR PD+ V+F+T AV ++KPF L +LV + L+
Sbjct: 80 VLRRLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 136
>gi|261406013|ref|YP_003242254.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|329929811|ref|ZP_08283487.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
gi|261282476|gb|ACX64447.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
gi|328935789|gb|EGG32250.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
Length = 238
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D++ +RR L L K GYE+ +G +A K E + L++ D+++P
Sbjct: 1 MSEHGNRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRKASSEDYGLVILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG+E+ R ++ ++ +T + KPF R+++ V +
Sbjct: 61 GMDGVEVCTRLRQVKS-TPILMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAI 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRSS 124
>gi|71064707|ref|YP_263434.1| osmolarity response regulator [Psychrobacter arcticus 273-4]
gi|93004966|ref|YP_579403.1| osmolarity response regulator [Psychrobacter cryohalolentis K5]
gi|71037692|gb|AAZ18000.1| transcriptional regulatory protein, OmpR [Psychrobacter arcticus
273-4]
gi|92392644|gb|ABE73919.1| two component transcriptional regulator, winged helix family
[Psychrobacter cryohalolentis K5]
Length = 254
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 63/121 (52%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P DG
Sbjct: 11 TQRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLLQRELFSLVVLDLMLPGEDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I + +R E + D+ ++ +T A L KPF+ ++L+ + +L +
Sbjct: 71 ISICKRLREDNGDIPIIMLTAKGGDADRIAGLEAGADDYLPKPFNPKELLARIKAVLRRQ 130
Query: 122 N 122
N
Sbjct: 131 N 131
>gi|152974825|ref|YP_001374342.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023577|gb|ABS21347.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 223
Score = 164 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ K+LL +D+ DMR+ + L GYE NG A K+ E + ++ DI+MPEM
Sbjct: 1 MNKYKVLLVDDESDMRQLVGMYLDNFGYEWDEAENGKEALLKLEEAHYDFVILDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGIAVCKEIRK-TSDIPIIFLTAKGEEWNRVNGLRNGADDYVVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|30019451|ref|NP_831082.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|218236073|ref|YP_002366082.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|29894995|gb|AAP08283.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|218164030|gb|ACK64022.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|326939022|gb|AEA14918.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 223
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +LV + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|323487712|ref|ZP_08092970.1| response regulator [Planococcus donghaensis MPA1U2]
gi|323398446|gb|EGA91234.1| response regulator [Planococcus donghaensis MPA1U2]
Length = 235
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + L L K G+ VV +G A E L+L DI++P D
Sbjct: 1 MSKTILVVDDEKPIADILQFNLKKEGFNVVCAYDGDEAIKIASEIQPDLMLLDIMLPNRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREIRKKY-DFPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
Query: 121 KN 122
+N
Sbjct: 120 QN 121
>gi|228911305|ref|ZP_04075109.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 200]
gi|228848323|gb|EEM93173.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 200]
Length = 234
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|229065125|ref|ZP_04200418.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH603]
gi|228716154|gb|EEL67873.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH603]
Length = 234
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|218896331|ref|YP_002444742.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218540658|gb|ACK93052.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 223
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +LV + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|301052937|ref|YP_003791148.1| response regulator [Bacillus anthracis CI]
gi|300375106|gb|ADK04010.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 223
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|154496344|ref|ZP_02035040.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
29799]
gi|150274427|gb|EDN01504.1| hypothetical protein BACCAP_00632 [Bacteroides capillosus ATCC
29799]
Length = 230
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QK+L+ ED+ ++ L L K GYE +G + R L+L DI++P MD
Sbjct: 1 MAQKVLIVEDEANIAELLHLYLEKEGYETAVAPDGGKGVELFRSFHPDLVLLDIMLPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E D V+ +T + KPF +++++ ++ +L
Sbjct: 61 GWSVLKKIRESDK-TPVIMLTAKGETEDKVHGLEGGADDYIVKPFEMKEVLARIHAVLRR 119
>gi|86606063|ref|YP_474826.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86554605|gb|ABC99563.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 243
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GY+VV+ +G A + R++ L++ D++MP++DG
Sbjct: 6 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEVFRKQDPDLVVLDVMMPKLDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 66 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123
>gi|119486641|ref|ZP_01620691.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119456258|gb|EAW37390.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 243
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRKTEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|229014632|ref|ZP_04171746.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides DSM 2048]
gi|229136291|ref|ZP_04265038.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST196]
gi|229170168|ref|ZP_04297855.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH621]
gi|228613313|gb|EEK70451.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH621]
gi|228647163|gb|EEL03251.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST196]
gi|228746643|gb|EEL96532.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides DSM 2048]
Length = 234
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|227529845|ref|ZP_03959894.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
gi|227350329|gb|EEJ40620.1| DNA-binding response regulator [Lactobacillus vaginalis ATCC 49540]
Length = 241
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEVV +G A +KV E L++ D+++P++D
Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAFDGEEALEKVEGEKPDLIILDLMLPKID 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R ++ +T + ++KPF R+LV V L
Sbjct: 67 GLEVAKRVRAKH-TTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 125
Query: 121 K 121
+
Sbjct: 126 Q 126
>gi|229176141|ref|ZP_04303634.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus MM3]
gi|228607376|gb|EEK64705.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus MM3]
Length = 234
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|228924210|ref|ZP_04087481.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228942615|ref|ZP_04105147.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228955717|ref|ZP_04117712.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228975545|ref|ZP_04136097.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228982181|ref|ZP_04142470.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis Bt407]
gi|229035124|ref|ZP_04189070.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1271]
gi|229051135|ref|ZP_04194679.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH676]
gi|229072931|ref|ZP_04206127.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus F65185]
gi|229082674|ref|ZP_04215131.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-2]
gi|229112879|ref|ZP_04242410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-15]
gi|229130712|ref|ZP_04259665.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-Cer4]
gi|229148016|ref|ZP_04276355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST24]
gi|229164416|ref|ZP_04292345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus R309803]
gi|229193717|ref|ZP_04320658.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 10876]
gi|228589742|gb|EEK47620.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 10876]
gi|228619066|gb|EEK75963.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus R309803]
gi|228635441|gb|EEK91932.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST24]
gi|228652729|gb|EEL08614.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-Cer4]
gi|228670558|gb|EEL25871.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-15]
gi|228700635|gb|EEL53164.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-2]
gi|228710177|gb|EEL62155.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus F65185]
gi|228722198|gb|EEL73599.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH676]
gi|228728190|gb|EEL79220.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1271]
gi|228777533|gb|EEM25811.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis Bt407]
gi|228784155|gb|EEM32182.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228803945|gb|EEM50569.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228817041|gb|EEM63134.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228835428|gb|EEM80798.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
Length = 234
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|75908099|ref|YP_322395.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75701824|gb|ABA21500.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 242
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSDPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|299536051|ref|ZP_07049368.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
gi|298728475|gb|EFI69033.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
Length = 231
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++++ R L L GYE + G + RE+ + L+L DI++PEM
Sbjct: 1 MTHRILIIEDEENIARVLQLELQFEGYEAAMAHTGTEGLLQYREQQWDLILLDIMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ +R + V+ +T + V ++KPF + +L+ + L
Sbjct: 61 GIDVLKRIRATESQTPVIMLTAKSEVEDKVKGLDLGANDYVTKPFEIEELLARIRNAL 118
>gi|228994533|ref|ZP_04154374.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
gi|228765212|gb|EEM13925.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
Length = 248
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ ED++++R + L + GYEV + NG +D L+L D++M + D
Sbjct: 9 MKQRILIIEDEENIREVCKRYLEREGYEVYTAMNGMEGWDLFLTHQPDLILLDLMMSKKD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T ++KPF R+LV V +L
Sbjct: 69 GWELCEEIRQQ-SNVPIIMLTAKGEERDRILGLTIGADDYVTKPFSPRELVLRVQIILKR 127
Query: 121 KN 122
N
Sbjct: 128 GN 129
>gi|15616589|ref|NP_244895.1| two-component response regulator [Bacillus halodurans C-125]
gi|10176652|dbj|BAB07746.1| two-component response regulator [Bacillus halodurans C-125]
Length = 236
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D+ + L L K G+ V+ +GA A ++V +E L+L DI++P DG
Sbjct: 3 NKKILVVDDEKPIADILKFNLEKEGFTVICAYDGAEAVEQVNQEKPDLILLDIMLPNKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 63 MEVCREVRKQF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|296128578|ref|YP_003635828.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
gi|296020393|gb|ADG73629.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
Length = 242
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + +G SA R+ L++ D+++P+MDG
Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGTSALRLARDTHPDLVVLDVMLPDMDGFS 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+F+T A ++KPF L ++V + +L
Sbjct: 71 VTRRLREKGEHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127
>gi|302390009|ref|YP_003825830.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
gi|302200637|gb|ADL08207.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
Length = 227
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D++ + + L K G++V ++G A D + + ++L++ D+++P +
Sbjct: 1 MSEIRILVVDDEEKIVDLVKLYLEKEGFKVDEAHDGQQALDMIAKGEYNLIILDLMLPVI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + + + D+ ++ +T + KPF R+LV V LL
Sbjct: 61 DGWTVCKEVRKK-SDIPIIMLTARGEEFDKVLGFELGADDYVVKPFSPRELVARVKALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|294501502|ref|YP_003565202.1| two-component response regulator PhoP [Bacillus megaterium QM
B1551]
gi|294351439|gb|ADE71768.1| two-component response regulator PhoP [Bacillus megaterium QM
B1551]
Length = 238
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + L L +AG+ V + +G Y+K E L++ D+++P+MD
Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|49477181|ref|YP_035526.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49328737|gb|AAT59383.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 223
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|333026940|ref|ZP_08455004.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
gi|332746792|gb|EGJ77233.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
Length = 276
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E
Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+ +T ++KPF R+LV V +L
Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133
>gi|310644837|ref|YP_003949596.1| alkaline phosphatase synthesis transcriptional regulatory protein
phop [Paenibacillus polymyxa SC2]
gi|309249788|gb|ADO59355.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa SC2]
Length = 243
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L K GYEV+ +G SA D ++ L+L D+++P MD
Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVDIAVKQQPDLILLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T ++KPF R+L+ V +
Sbjct: 61 GMDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|295706850|ref|YP_003599925.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
gi|294804509|gb|ADF41575.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
Length = 238
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + L L +AG+ V + +G Y+K E L++ D+++P+MD
Sbjct: 1 MSKKLLVVDDEQSISTLLQYNLQQAGFTVETAEDGEEGYNKALEGKPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKKLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|218900607|ref|YP_002449018.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
gi|218545115|gb|ACK97509.1| DNA-binding response regulator YycF [Bacillus cereus G9842]
Length = 235
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|119511035|ref|ZP_01630155.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
gi|119464286|gb|EAW45203.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
Length = 242
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKSEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|86609993|ref|YP_478755.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558535|gb|ABD03492.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 246
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GY+VV+ ++G A + ++ L++ D++MP++DG
Sbjct: 6 KERILVVDDEASIRRILETRLSMIGYDVVTASDGEEALEVFHKQDPDLVVLDVMMPKLDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 66 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 123
>gi|282898472|ref|ZP_06306462.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
gi|281196638|gb|EFA71544.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
Length = 242
Score = 164 bits (416), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKANPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|199597665|ref|ZP_03211093.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
gi|258509808|ref|YP_003172559.1| two-component response regulator [Lactobacillus rhamnosus GG]
gi|258540993|ref|YP_003175492.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
gi|199591472|gb|EDY99550.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
gi|257149735|emb|CAR88708.1| Two-component response regulator [Lactobacillus rhamnosus GG]
gi|257152669|emb|CAR91641.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
Length = 237
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR+ + D ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
>gi|11467431|ref|NP_043139.1| hypothetical protein CypaCp002 [Cyanophora paradoxa]
gi|1351749|sp|P48259|YCF27_CYAPA RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|1016232|gb|AAA81319.1| ycf27 [Cyanophora paradoxa]
Length = 239
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEVV+ +G A + E +L++ D++MP++DG
Sbjct: 5 KKKILVVDDEISIRRILETRLSMIGYEVVTAADGEEALTIFQLEHPNLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + LL
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSLLRR 122
>gi|52144036|ref|YP_082792.1| response regulator [Bacillus cereus E33L]
gi|118476873|ref|YP_894024.1| response regulator [Bacillus thuringiensis str. Al Hakam]
gi|196035354|ref|ZP_03102759.1| DNA-binding response regulator [Bacillus cereus W]
gi|196040638|ref|ZP_03107937.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196046479|ref|ZP_03113704.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|218902506|ref|YP_002450340.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|225863261|ref|YP_002748639.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|254726203|ref|ZP_05187985.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|51977505|gb|AAU19055.1| response regulator [Bacillus cereus E33L]
gi|118416098|gb|ABK84517.1| response regulator [Bacillus thuringiensis str. Al Hakam]
gi|195992031|gb|EDX55994.1| DNA-binding response regulator [Bacillus cereus W]
gi|196022663|gb|EDX61345.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196028428|gb|EDX67036.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218538516|gb|ACK90914.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|225785753|gb|ACO25970.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 223
Score = 163 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|295399496|ref|ZP_06809478.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312109946|ref|YP_003988262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294978962|gb|EFG54558.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311215047|gb|ADP73651.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 235
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + L L +AG+ VV+ N+G A +KV E ++ D+++P++D
Sbjct: 1 MSKKVLVVDDEQSIVTLLTYNLERAGFTVVTANDGEEAIEKVAAERPEFIILDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GVEVCKQLRQQKVMTPILMLTAKDDEFDKILGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|317154759|ref|YP_004122807.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
gi|316945010|gb|ADU64061.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
Length = 228
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ ED D R L L AG++V + +GAS ++L D++MP M
Sbjct: 1 MSAHKILVVEDHKDTRELLKYNLTAAGFDVAAAEDGASGLALAEAFKPDIVLLDLMMPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R+ + V+ +T + KPF R+LV + +
Sbjct: 61 DGLEVCRQIKGNSSLSRIPVIMLTAKGEEIDKIVGLELGADDYIVKPFSPRELVLRIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|85859021|ref|YP_461223.1| response regulator [Syntrophus aciditrophicus SB]
gi|85722112|gb|ABC77055.1| response regulator with a winged-helix DNA-binding domain
[Syntrophus aciditrophicus SB]
Length = 245
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ D+ L L K G+ V +G A +R L++ D+++P + G+
Sbjct: 15 KRILVVDDEKDIVELLTFNLEKEGFAVTQAFDGEEALKTIRTNKPDLVILDLMLPGVSGL 74
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R+ E L V+ +T ++KPF++R+LV V +L
Sbjct: 75 DICRQVRRNEETETLPVIMLTAKGEPLDKVVGLEIGADDYITKPFNVRELVARVRAVLRR 134
Query: 121 KN 122
+
Sbjct: 135 SS 136
>gi|30261401|ref|NP_843778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47526577|ref|YP_017926.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184231|ref|YP_027483.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65318666|ref|ZP_00391625.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|167634425|ref|ZP_02392746.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167639277|ref|ZP_02397549.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170686885|ref|ZP_02878105.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170706300|ref|ZP_02896761.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177651390|ref|ZP_02934179.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|227815860|ref|YP_002815869.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229604024|ref|YP_002865817.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254682541|ref|ZP_05146402.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254733959|ref|ZP_05191673.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254740353|ref|ZP_05198044.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254753741|ref|ZP_05205776.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254758837|ref|ZP_05210864.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30255255|gb|AAP25264.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47501725|gb|AAT30401.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178158|gb|AAT53534.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|167512716|gb|EDR88090.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530313|gb|EDR93039.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170128834|gb|EDS97700.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170669408|gb|EDT20151.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172082668|gb|EDT67731.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|227002678|gb|ACP12421.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229268432|gb|ACQ50069.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 223
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MSKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254414140|ref|ZP_05027907.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196178815|gb|EDX73812.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 245
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG
Sbjct: 8 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRTSEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 125
>gi|158317067|ref|YP_001509575.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158112472|gb|ABW14669.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 246
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L ++L GYEV + +G +A + V + +++ D++MP MDG+E
Sbjct: 2 RVLVVDDDAAVRESLERSLRFEGYEVRTAPDGVAALEVVARDQPDIVVLDVMMPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ V+ +T +A L KPF L +L + L+
Sbjct: 62 TCRRLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRALIRR 118
>gi|308071608|ref|YP_003873213.1| transcriptional regulatory protein yycF [Paenibacillus polymyxa
E681]
gi|305860887|gb|ADM72675.1| Transcriptional regulatory protein yycF [Paenibacillus polymyxa
E681]
Length = 243
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L K GY+V+ +G +A D ++ L+L D+++P MD
Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYQVICAFDGITAVDIAVKQQPDLILLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T ++KPF R+L+ V +
Sbjct: 61 GMDVCREVRGHQLQTPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|228918078|ref|ZP_04081606.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228930472|ref|ZP_04093472.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228936746|ref|ZP_04099537.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228949188|ref|ZP_04111456.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228988693|ref|ZP_04148779.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229094577|ref|ZP_04225644.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-42]
gi|229124969|ref|ZP_04254143.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 95/8201]
gi|229142215|ref|ZP_04270739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST26]
gi|229159026|ref|ZP_04287082.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 4342]
gi|229187695|ref|ZP_04314831.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BGSC 6E1]
gi|229199595|ref|ZP_04326256.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1293]
gi|228584000|gb|EEK42157.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1293]
gi|228595763|gb|EEK53447.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BGSC 6E1]
gi|228624445|gb|EEK81216.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 4342]
gi|228641233|gb|EEK97540.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST26]
gi|228658470|gb|EEL14136.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 95/8201]
gi|228688824|gb|EEL42655.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-42]
gi|228771144|gb|EEM19624.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228810471|gb|EEM56824.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228822955|gb|EEM68796.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228829191|gb|EEM74828.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228841558|gb|EEM86674.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
Length = 234
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 1 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|300869112|ref|ZP_07113711.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
gi|300332881|emb|CBN58907.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
Length = 247
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTDPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|113474756|ref|YP_720817.1| two component transcriptional regulator [Trichodesmium erythraeum
IMS101]
gi|110165804|gb|ABG50344.1| two component transcriptional regulator, winged helix family
[Trichodesmium erythraeum IMS101]
Length = 243
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFHNTTPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|330447454|ref|ZP_08311103.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491645|dbj|GAA05600.1| HAMP domain protein [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 1114
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L AGY V + NG A V E+ L+L DI+MPEM G E+
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAENGPQALAMVEEQRPDLILLDIMMPEMSGYEV 766
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +L +M ++ + L+KPF+ +L+ + L
Sbjct: 767 CTILRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822
>gi|225174414|ref|ZP_03728413.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225170199|gb|EEG78994.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 236
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ KIL+ +D+ +RR + ++L K Y VV +G A K+ E LL+ D++MPE
Sbjct: 1 MSKTTKILVVDDEPKIRRIVEQSLRKDAYRVVHACDGLEALQKLETEHPDLLVLDLMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ + + V+ +T + ++KPF +L V +L
Sbjct: 61 MDGFEVCKAMRNRGDNTPVIILTAKDELEDKAFGFNLGVDDYVTKPFSPSELALRVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332971396|gb|EGK10354.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 273
Score = 163 bits (415), Expect = 6e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ + L L K G+EV ++G A ++ EEP L+L D+++P D
Sbjct: 39 MAAKILVVEDEKPIADILQFNLSKEGFEVECIHDGDEALKRIHEEPPDLILLDLMLPGTD 98
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ E + ++ +T + ++KPF R+L+ + L
Sbjct: 99 GIEICRKVREKYR-MPIIMVTAKDSEVDKVLGLELGADDYVTKPFSNRELLARIKANLRR 157
>gi|116496230|ref|YP_807964.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
gi|191639755|ref|YP_001988921.1| Putative response regulator [Lactobacillus casei BL23]
gi|239630681|ref|ZP_04673712.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301067832|ref|YP_003789855.1| OmpR family DNA-binding response regulator [Lactobacillus casei
str. Zhang]
gi|116106380|gb|ABJ71522.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus casei ATCC 334]
gi|190714057|emb|CAQ68063.1| Putative response regulator [Lactobacillus casei BL23]
gi|239526964|gb|EEQ65965.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300440239|gb|ADK20005.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus casei str. Zhang]
Length = 237
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR+ + D ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
>gi|226310588|ref|YP_002770482.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093536|dbj|BAH41978.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 239
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59
M IL+ +D+ ++ L L G+ V S +G A + + E +L+L DI+MP M
Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL + DL ++F++ ++KPF +L+ + L
Sbjct: 61 SGYELCSQIRREW-DLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|163943146|ref|YP_001648030.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229020691|ref|ZP_04177419.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1273]
gi|229026906|ref|ZP_04183230.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1272]
gi|163865343|gb|ABY46402.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228734409|gb|EEL85079.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1272]
gi|228740606|gb|EEL90876.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1273]
Length = 235
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|89895322|ref|YP_518809.1| hypothetical protein DSY2576 [Desulfitobacterium hafniense Y51]
gi|89334770|dbj|BAE84365.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 230
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+D
Sbjct: 1 MNA-ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R E D+ ++ +T L KPF ++LV V LL
Sbjct: 60 GWKVCRDVRER-SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRR 118
>gi|17231314|ref|NP_487862.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17132956|dbj|BAB75521.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 242
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALDTFRKSDPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|152977665|ref|YP_001377182.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026417|gb|ABS24187.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 235
Score = 163 bits (415), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|187479560|ref|YP_787585.1| phosphate regulon two-component response regulator [Bordetella
avium 197N]
gi|115424147|emb|CAJ50700.1| phosphate regulon two-component response regulator [Bordetella
avium 197N]
Length = 232
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P M
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR+ E ++ V+ +T A D ++KPF ++L+ + +L
Sbjct: 61 GLSLARKLRDDERTRNVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|163943242|ref|YP_001642472.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163865439|gb|ABY46497.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 236
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED++++R + L + YEV + NG +D L++ D++MP+ DG
Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
EL + ++ ++ +T L+KPF R+LV V +L N
Sbjct: 62 ELCGEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120
>gi|302519214|ref|ZP_07271556.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302428109|gb|EFK99924.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 290
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E
Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 78 VCRRMRARHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133
>gi|30023491|ref|NP_835122.1| two-component response regulator yycF [Bacillus cereus ATCC 14579]
gi|206970303|ref|ZP_03231256.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
gi|218232846|ref|YP_002370241.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
gi|228961729|ref|ZP_04123333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|229153624|ref|ZP_04281801.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1550]
gi|229181712|ref|ZP_04309035.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 172560W]
gi|296505894|ref|YP_003667594.1| two-component response regulator yycF [Bacillus thuringiensis
BMB171]
gi|29899052|gb|AAP12323.1| Two-component response regulator yycF [Bacillus cereus ATCC 14579]
gi|206734880|gb|EDZ52049.1| DNA-binding response regulator YycF [Bacillus cereus AH1134]
gi|218160803|gb|ACK60795.1| DNA-binding response regulator YycF [Bacillus cereus B4264]
gi|228601745|gb|EEK59243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 172560W]
gi|228629853|gb|EEK86505.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1550]
gi|228797964|gb|EEM44973.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|296326946|gb|ADH09874.1| two-component response regulator yycF [Bacillus thuringiensis
BMB171]
gi|326943264|gb|AEA19160.1| two-component response regulator yycF [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 235
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|219669756|ref|YP_002460191.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219540016|gb|ACL21755.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 230
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D++ +R + L + GYEV NG A +K +++ ++LL+ D++MPE+D
Sbjct: 1 MNA-ILVIDDEERIRHLVRMYLEREGYEVDEAGNGREALEKFQKQDYALLIVDLMMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R E D+ ++ +T L KPF ++LV V LL
Sbjct: 60 GWKVCRDVRER-SDIPIIMLTARGEEFDRVLGFELGADDYLVKPFSTKELVARVKALLRR 118
>gi|311032627|ref|ZP_07710717.1| two-component response regulator [Bacillus sp. m3-13]
Length = 227
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +MR L L K Y+V+ NG A D + + L++ D++MP+MDG
Sbjct: 7 VLVVDDEAEMREMLGMYLQKENYQVLHAENGEEALDMLYDHEVDLIILDVMMPDMDGFTA 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ E + ++ +T + + KPF ++L+ V LL N
Sbjct: 67 CKKIREKYM-MPILMLTAKSDELDKVRGLKLGADDYVMKPFSPKELLARVEALLRRSN 123
>gi|300118833|ref|ZP_07056553.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
gi|298723801|gb|EFI64523.1| DNA-binding response regulator YycF [Bacillus cereus SJ1]
Length = 235
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKASEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|268316084|ref|YP_003289803.1| two component transcriptional regulator, winged helix family
[Rhodothermus marinus DSM 4252]
gi|262333618|gb|ACY47415.1| two component transcriptional regulator, winged helix family
[Rhodothermus marinus DSM 4252]
Length = 228
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL ED+ M L + L + GY V G A ++ +LL+ D+ +P MD
Sbjct: 1 MPRPILLVEDEIAMAALLRQGLEEEGYAVEWVLTGEEALARLEHLEPALLVLDVRLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + PDL V+ +T V L KPF +L+ + LL
Sbjct: 61 GVEVCRQVRQRWPDLPVLMLTALDDVENRVRGLRAGADDYLPKPFAFEELLARIEALLRR 120
>gi|162453154|ref|YP_001615521.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
gi|161163736|emb|CAN95041.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
Length = 234
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ +R L+ AL K GY V + +G +A + L++ D+++PE+D
Sbjct: 1 MSKHILVVDDEARIREVLLYALQKEGYAVTAVADGRAAVEAAGAGTVDLVVLDVMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++F++ A L+KPF R+LV V LL
Sbjct: 61 GLEVCRRLRA-GSRTPILFLSARADEVDRIVGLELGGDDYLTKPFSPRELVARVRALLRR 119
>gi|330684068|gb|EGG95823.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis VCU121]
Length = 236
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A KV L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVESSQPDLIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|89096800|ref|ZP_01169692.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
gi|89088815|gb|EAR67924.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
Length = 236
Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV +G A +KV E L+L DI++P+ D
Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGNEALEKVEEVKPDLILLDIMLPQRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 119
>gi|186685833|ref|YP_001869029.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468285|gb|ACC84086.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 242
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKTEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|328555724|gb|AEB26216.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
TA208]
Length = 235
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GY+V +G A + V E L+L DI++P D
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|229551249|ref|ZP_04439974.1| response regulator [Lactobacillus rhamnosus LMS2-1]
gi|229315412|gb|EEN81385.1| response regulator [Lactobacillus rhamnosus LMS2-1]
gi|259651071|dbj|BAI43233.1| two-component response regulator [Lactobacillus rhamnosus GG]
Length = 238
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D
Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVESESPDLILLDLMLPKID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR+ + D ++ +T + ++KPF R+LV V L
Sbjct: 62 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120
>gi|300113425|ref|YP_003760000.1| winged helix family two component transcriptional regulator
[Nitrosococcus watsonii C-113]
gi|299539362|gb|ADJ27679.1| two component transcriptional regulator, winged helix family
[Nitrosococcus watsonii C-113]
Length = 231
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R L AL + GY +G A+ ++ E L+L D ++P +
Sbjct: 3 MAATILIVDDEAAIREMLGFALTQEGYHYQVAADGEQAWQQINEFRPDLILLDWMLPGIS 62
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L V+ +T ++KPF +L+ + +L
Sbjct: 63 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPMELIARIKAVL 122
Query: 119 TI 120
Sbjct: 123 RR 124
>gi|332982066|ref|YP_004463507.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332699744|gb|AEE96685.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 228
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD ++ + L K G+EV NNG P ++++ DI++P DG
Sbjct: 4 NYKILIIDDDKNICQLLNLYFTKEGFEVDIANNGKEGMSHFSNNPPNIVILDIMLPGKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R + D+ ++ +T + + KPF ++L+ V +L
Sbjct: 64 WDICREIRRM-SDIPIIMLTAKSETFDKVLGLELGADDYVVKPFDPKELIARVKAVLRRY 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|228994185|ref|ZP_04154085.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus pseudomycoides DSM 12442]
gi|229000254|ref|ZP_04159823.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock3-17]
gi|229007777|ref|ZP_04165365.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock1-4]
gi|229087951|ref|ZP_04220061.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-44]
gi|228695364|gb|EEL48239.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-44]
gi|228753485|gb|EEM02935.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock1-4]
gi|228759586|gb|EEM08563.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock3-17]
gi|228765637|gb|EEM14291.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus pseudomycoides DSM 12442]
Length = 247
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 14 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 74 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 132
>gi|94972307|ref|YP_594347.1| two component transcriptional regulator [Deinococcus geothermalis
DSM 11300]
gi|94554358|gb|ABF44273.1| two component transcriptional regulator, winged helix family
[Deinococcus geothermalis DSM 11300]
Length = 248
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ +R + + L + GY V +NG + R L+L D++MP MDG+
Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E RR + + V+F+T ++KPF + +L+ V L +
Sbjct: 83 EFLRRFRATE-QVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141
>gi|322383919|ref|ZP_08057649.1| two-component response regulator YclK-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321151396|gb|EFX44583.1| two-component response regulator YclK-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 244
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R + L GY+V+ NG A E L++ DI+MPE+D
Sbjct: 18 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ V+ +T A ++KPF L+ RLL
Sbjct: 78 GWSVCRRIRK-TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLES 136
Query: 121 K 121
+
Sbjct: 137 R 137
>gi|219849580|ref|YP_002464013.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219543839|gb|ACL25577.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 236
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L +AG+ V+S +G SA R+E SL++ D+++P MD
Sbjct: 1 MKRTILVVDDEPGIVKIARDYLERAGFHVISAGDGPSALRLARQEHPSLIVLDLMLPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R + L + ++ +T ++KPF R+LV V +L
Sbjct: 61 GLDVTRALRQDPLTAGVPIIMLTARVEETDRLIGLELGADDYITKPFSPRELVARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254388578|ref|ZP_05003812.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197702299|gb|EDY48111.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 243
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L ++L GY +G A K LL+ DI MP MDG+
Sbjct: 8 ERILIVDDEPAVREALQRSLAFEGYATEVAVDGIDALAKAESYRPDLLVLDIQMPRMDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L + LL +
Sbjct: 68 TAARRLRATGSTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 127
>gi|317129907|ref|YP_004096189.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315474855|gb|ADU31458.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 238
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D++ + L L + G++V + +G +A DK E F ++ D+++PEMD
Sbjct: 1 MAQHILVVDDEESIVTLLQFNLEQGGFQVSTAMDGQTALDKALNESFDFIVLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + ++ +T L+KPF R++V V +L
Sbjct: 61 GLEVCKQLRQNKIMTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVRAILRR 120
>gi|167464300|ref|ZP_02329389.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 227
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R + L GY+V+ NG A E L++ DI+MPE+D
Sbjct: 1 MQKTILVVEDEHILREIIKDYLLNEGYQVLEAINGKEALTLFEENEVHLVILDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ V+ +T A ++KPF L+ RLL
Sbjct: 61 GWSVCRRIRK-TSNIPVIMLTARADEDDTLLGFELGADDYVTKPFSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|149180955|ref|ZP_01859456.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
gi|148851239|gb|EDL65388.1| hypothetical protein BSG1_10961 [Bacillus sp. SG-1]
Length = 236
Score = 163 bits (414), Expect = 8e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV +G A E L+L DI++P D
Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVHCAYDGDEAVKMAEEIKPDLVLLDIMLPNRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREIRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|260892544|ref|YP_003238641.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
gi|260864685|gb|ACX51791.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
Length = 236
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++ + L K G++V+ +GA A + ++ E L++ D+++P +DG E
Sbjct: 9 TVLVVEDDRNIAELVSLYLEKHGFKVLKAASGAEALEILKNETVDLVVLDLMLPGIDGWE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ +T + + KPF ++L+ V +L
Sbjct: 69 VCRQIRS-NSQLPVIMLTAKGELQDKLQGFELGADDYVVKPFDPQELIARVKAVLRR 124
>gi|29830590|ref|NP_825224.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607702|dbj|BAC71759.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 243
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG+
Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYQPDLVVLDIQMPRMDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 71 TAARRIRGAGTTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130
>gi|30265484|ref|NP_847861.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
gi|42784660|ref|NP_981907.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
gi|47531052|ref|YP_022401.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
Ancestor']
gi|47568665|ref|ZP_00239362.1| response regulator [Bacillus cereus G9241]
gi|49188303|ref|YP_031556.1| DNA-binding response regulator YycF [Bacillus anthracis str.
Sterne]
gi|49480468|ref|YP_039456.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52145274|ref|YP_086731.1| response regulator [Bacillus cereus E33L]
gi|65317447|ref|ZP_00390406.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|118480494|ref|YP_897645.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|165872537|ref|ZP_02217170.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
gi|167636251|ref|ZP_02394554.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
gi|167641448|ref|ZP_02399698.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
gi|170689182|ref|ZP_02880379.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
gi|170708658|ref|ZP_02899097.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
gi|177651874|ref|ZP_02934457.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
gi|190568892|ref|ZP_03021794.1| DNA-binding response regulator YycF [Bacillus anthracis
Tsiankovskii-I]
gi|196036153|ref|ZP_03103553.1| DNA-binding response regulator YycF [Bacillus cereus W]
gi|196041965|ref|ZP_03109252.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
gi|196045552|ref|ZP_03112783.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
gi|206975866|ref|ZP_03236777.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
gi|217962959|ref|YP_002341537.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
gi|218906658|ref|YP_002454492.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
gi|222098943|ref|YP_002533001.1| DNA-binding response regulator yycf [Bacillus cereus Q1]
gi|225867447|ref|YP_002752825.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
gi|227818235|ref|YP_002818244.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
684]
gi|229604878|ref|YP_002869675.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
gi|254687093|ref|ZP_05150951.1| DNA-binding response regulator YycF [Bacillus anthracis str.
CNEVA-9066]
gi|254724124|ref|ZP_05185909.1| DNA-binding response regulator YycF [Bacillus anthracis str. A1055]
gi|254735141|ref|ZP_05192851.1| DNA-binding response regulator YycF [Bacillus anthracis str.
Western North America USA6153]
gi|254742150|ref|ZP_05199837.1| DNA-binding response regulator YycF [Bacillus anthracis str. Kruger
B]
gi|254755940|ref|ZP_05207972.1| DNA-binding response regulator YycF [Bacillus anthracis str.
Vollum]
gi|254761652|ref|ZP_05213672.1| DNA-binding response regulator YycF [Bacillus anthracis str.
Australia 94]
gi|301056940|ref|YP_003795151.1| DNA-binding response regulator YycF [Bacillus anthracis CI]
gi|30260162|gb|AAP29347.1| DNA-binding response regulator YycF [Bacillus anthracis str. Ames]
gi|42740592|gb|AAS44515.1| DNA-binding response regulator YycF [Bacillus cereus ATCC 10987]
gi|47506200|gb|AAT34876.1| DNA-binding response regulator YycF [Bacillus anthracis str. 'Ames
Ancestor']
gi|47554653|gb|EAL13007.1| response regulator [Bacillus cereus G9241]
gi|49182230|gb|AAT57606.1| DNA-binding response regulator YycF [Bacillus anthracis str.
Sterne]
gi|49332024|gb|AAT62670.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51978743|gb|AAU20293.1| response regulator [Bacillus cereus E33L]
gi|118419719|gb|ABK88138.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|164711760|gb|EDR17304.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0488]
gi|167510623|gb|EDR86019.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0193]
gi|167528366|gb|EDR91137.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0442]
gi|170126440|gb|EDS95328.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0389]
gi|170666825|gb|EDT17591.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0465]
gi|172082578|gb|EDT67642.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0174]
gi|190559959|gb|EDV13942.1| DNA-binding response regulator YycF [Bacillus anthracis
Tsiankovskii-I]
gi|195991320|gb|EDX55288.1| DNA-binding response regulator YycF [Bacillus cereus W]
gi|196023759|gb|EDX62435.1| DNA-binding response regulator YycF [Bacillus cereus 03BB108]
gi|196027220|gb|EDX65840.1| DNA-binding response regulator YycF [Bacillus cereus NVH0597-99]
gi|206745960|gb|EDZ57356.1| DNA-binding response regulator YycF [Bacillus cereus H3081.97]
gi|217065926|gb|ACJ80176.1| DNA-binding response regulator YycF [Bacillus cereus AH187]
gi|218539027|gb|ACK91425.1| DNA-binding response regulator YycF [Bacillus cereus AH820]
gi|221243002|gb|ACM15712.1| DNA-binding response regulator YycF [Bacillus cereus Q1]
gi|225788895|gb|ACO29112.1| DNA-binding response regulator YycF [Bacillus cereus 03BB102]
gi|227004085|gb|ACP13828.1| DNA-binding response regulator YycF [Bacillus anthracis str. CDC
684]
gi|229269286|gb|ACQ50923.1| DNA-binding response regulator YycF [Bacillus anthracis str. A0248]
gi|300379109|gb|ADK08013.1| DNA-binding response regulator YycF [Bacillus cereus biovar
anthracis str. CI]
gi|324329417|gb|ADY24677.1| DNA-binding response regulator YycF [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 235
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKATEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|145593748|ref|YP_001158045.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145303085|gb|ABP53667.1| response regulator receiver [Salinispora tropica CNB-440]
Length = 230
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ +DD + + + L AGY+V +G SA V EP L++ D+++P +D
Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLVHAGYQVRHVGDGDSALAAVAAEPPDLVVLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T A LSKPF R+LV V +L
Sbjct: 61 GLEVCRRLRTKPGGVPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRR 120
>gi|148543262|ref|YP_001270632.1| two component transcriptional regulator [Lactobacillus reuteri DSM
20016]
gi|184152673|ref|YP_001841014.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
gi|77745293|gb|ABB02547.1| response regulator [Lactobacillus reuteri]
gi|148530296|gb|ABQ82295.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri DSM 20016]
gi|183224017|dbj|BAG24534.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
Length = 235
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEVV +G +A ++V E L++ D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R + ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|294501968|ref|YP_003565668.1| two-component response regulator WalR [Bacillus megaterium QM
B1551]
gi|294351905|gb|ADE72234.1| two-component response regulator WalR [Bacillus megaterium QM
B1551]
Length = 235
Score = 163 bits (414), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ + L L K GYEV +G A +KV E ++L DI++P+ D
Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|145222477|ref|YP_001133155.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315442922|ref|YP_004075801.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145214963|gb|ABP44367.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315261225|gb|ADT97966.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length = 231
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L ++L GY V +G A D + + ++ D++MP +D
Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|295707319|ref|YP_003600394.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
gi|294804978|gb|ADF42044.1| two-component response regulator WalR [Bacillus megaterium DSM 319]
Length = 235
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ + L L K GYEV +G A +KV E ++L DI++P+ D
Sbjct: 1 MDKRILVVDDEKPIADILKFNLQKEGYEVFCAYDGVEALEKVEEVQPEMILLDIMLPQKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 119
>gi|170077600|ref|YP_001734238.1| two-component DNA binding response regulator [Synechococcus sp. PCC
7002]
gi|169885269|gb|ACA98982.1| Two-component DNA binding response regulator [Synechococcus sp. PCC
7002]
Length = 242
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GYEVV+ +G A E L++ D++MP++DG
Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYEVVTAADGEEALATFDEADPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|282898613|ref|ZP_06306601.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281196481|gb|EFA71390.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
Length = 242
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|310642600|ref|YP_003947358.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309247550|gb|ADO57117.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 238
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D++ +RR L L K GYE+ +G A K +S++L D+++P
Sbjct: 1 MSEQSNRILIVDDEERIRRLLRMYLEKEGYEIEEAEDGEIALQKATASDYSIILLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDGIE+ R + V+ +T + KPF R+++ V +
Sbjct: 61 GMDGIEVCTRLRQ-TKSTPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAI 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRSS 124
>gi|304569547|ref|NP_441728.2| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 243
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GYEVV+ +G A E L++ D++MP++DG
Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|167464858|ref|ZP_02329947.1| two-component response regulator involved in phosphate regulation
[Paenibacillus larvae subsp. larvae BRL-230010]
gi|322382891|ref|ZP_08056726.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321153160|gb|EFX45615.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 237
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ ED+ + R L L + GYE +GA Y + L++ DI++P M+
Sbjct: 1 MSQKILVIEDEPTLSRLLSYNLAQEGYETDVVGDGAEGYQAAVRNTYDLIILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + V+ +T A ++KPF + +L++ V+ +L
Sbjct: 61 GFEVLSKLRQKGSKTPVIILTARNAEEEVVQGLKFGADDYITKPFGVAELLSRVSAVLRR 120
>gi|158320115|ref|YP_001512622.1| two component, sigma54 specific, Fis family transcriptional
regulator [Alkaliphilus oremlandii OhILAs]
gi|158140314|gb|ABW18626.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Alkaliphilus oremlandii OhILAs]
Length = 451
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 65/120 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ +D+ +MR + KAL K GY + NG +K+ E L+L D+ MP MD
Sbjct: 1 MNKRILIIDDEKNMRWAIKKALEKEGYNIYEAENGQDGLEKLEEIYPDLILLDLRMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E +R E++ D+ V+ +T + ++ +SKPF + +L + + L +
Sbjct: 61 GMEALQRIKEINQDIPVIMLTAHGTMESAVEAMKLGALDYISKPFDIEELKVLIKKALNV 120
>gi|166364957|ref|YP_001657230.1| OmpR family two-component response regulator [Microcystis
aeruginosa NIES-843]
gi|166087330|dbj|BAG02038.1| two-component response regulator OmpR subfamily [Microcystis
aeruginosa NIES-843]
Length = 246
Score = 162 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEVV+ +G A + R L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|227532778|ref|ZP_03962827.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227189612|gb|EEI69679.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|327383868|gb|AEA55344.1| VicR protein [Lactobacillus casei LC2W]
gi|327387049|gb|AEA58523.1| VicR protein [Lactobacillus casei BD-II]
Length = 238
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY+VV+ +G A KV E L+L D+++P++D
Sbjct: 2 MAKKILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALKKVEAESPDLILLDLMLPKID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR+ + D ++ +T + ++KPF R+LV V L
Sbjct: 62 GLEVARQIRKEH-DTPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 120
>gi|226948317|ref|YP_002803408.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|226841453|gb|ACO84119.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|322805369|emb|CBZ02933.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 233
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 ISGEEVCSKIRE-FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|108801265|ref|YP_641462.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870416|ref|YP_940368.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126437246|ref|YP_001072937.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|123178190|sp|Q1B3X8|MPRA_MYCSS RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012472|sp|A3Q5L9|MPRA_MYCSJ RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012476|sp|A1UL70|MPRA_MYCSK RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|108771684|gb|ABG10406.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696505|gb|ABL93578.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126237046|gb|ABO00447.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length = 230
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L ++L GY V +G A D + ++ D++MP +D
Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDLIANNRPDAVVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|172038915|ref|YP_001805416.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|171700369|gb|ACB53350.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 243
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAVPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|312127494|ref|YP_003992368.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311777513|gb|ADQ06999.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 223
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E
Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGIDGIAMFKNEMPDLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|168182605|ref|ZP_02617269.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum Bf]
gi|170761342|ref|YP_001787844.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A3 str. Loch Maree]
gi|237795967|ref|YP_002863519.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum Ba4 str. 657]
gi|169408331|gb|ACA56742.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A3 str. Loch Maree]
gi|182674265|gb|EDT86226.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum Bf]
gi|229260789|gb|ACQ51822.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum Ba4 str. 657]
Length = 232
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ IT ++KPF +R++V V +L
Sbjct: 64 EVCKEIRKDNNTATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|313884444|ref|ZP_07818205.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Eremococcus coleocola ACS-139-V-Col8]
gi|312620228|gb|EFR31656.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Eremococcus coleocola ACS-139-V-Col8]
Length = 273
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 58/118 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L +AGY+V ++G AY+ + + + ++ D+++P MDG+
Sbjct: 2 EHILIVDDEPSILTLLAYNLQQAGYQVDQADDGLLAYEMIEQNKYDFIILDVMLPGMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R+ + + ++ +T ++KPF R+++ + +L
Sbjct: 62 DICRKVRKKGSQVPILMLTAKDEEYDKVVGLELGADDYMTKPFSPREVLARIKAILRR 119
>gi|319651063|ref|ZP_08005197.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
gi|317397233|gb|EFV77937.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
Length = 236
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEVV +G A DKV E L+L DI++P+ D
Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYEVVCAYDGNDALDKVEEIKPDLILLDIMLPQRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + D+ ++ +T + ++KPF R+L+ V +
Sbjct: 61 GIEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANMRR 119
>gi|284929471|ref|YP_003421993.1| winged helix family two component transcriptional regulator
[cyanobacterium UCYN-A]
gi|284809915|gb|ADB95612.1| two component transcriptional regulator, winged helix family
[cyanobacterium UCYN-A]
Length = 243
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + + L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALEIFYDSVPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|269926540|ref|YP_003323163.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269790200|gb|ACZ42341.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 233
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + L GY V + +G DK R+ P L++ D+++PEM G E
Sbjct: 7 RILVIEDEHQIADLLRRGLTFKGYLVDTAASGEEGLDKARDNPPDLVILDLMLPEMSGEE 66
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E LDPDL ++ +T A ++KPF+ +L+ + L +
Sbjct: 67 VCRRLREGLDPDLPIIILTAKDATEDKIAGLDAGADDYITKPFNFEELLARIRASLRRR 125
>gi|154688139|ref|YP_001423300.1| YycF [Bacillus amyloliquefaciens FZB42]
gi|308175750|ref|YP_003922455.1| transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
DSM 7]
gi|154353990|gb|ABS76069.1| YycF [Bacillus amyloliquefaciens FZB42]
gi|307608614|emb|CBI44985.1| Transcriptional regulatory protein WalR [Bacillus amyloliquefaciens
DSM 7]
gi|328914110|gb|AEB65706.1| Transcriptional regulatory protein yycF [Bacillus amyloliquefaciens
LL3]
Length = 236
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GY+V +G A + V E L+L DI++P D
Sbjct: 2 MDKKILVVDDEKPIADILEFNLRKEGYDVHCAYDGNEAVEMVEELQPDLILLDIMLPNKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|225181123|ref|ZP_03734569.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225168092|gb|EEG76897.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 229
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + L L K GYEV+ +G A EE L++ D+++P++DG E
Sbjct: 3 RVLVVDDEKTIVKGLKFNLEKEGYEVLVAFDGEEALRVFNEESPDLIVLDLMLPKLDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ ++ +T ++KPF+ R+L V ++
Sbjct: 63 VCRNIRK-TSDVPIVMLTARGEDIDKILGLELGADDYVTKPFNPRELAARVKAIMRR 118
>gi|222529445|ref|YP_002573327.1| winged helix family two component transcriptional regulator
[Caldicellulosiruptor bescii DSM 6725]
gi|222456292|gb|ACM60554.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor bescii DSM 6725]
Length = 223
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E
Sbjct: 2 KILIIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|167756876|ref|ZP_02429003.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
gi|237734586|ref|ZP_04565067.1| two-component system response regulator [Mollicutes bacterium D7]
gi|167703051|gb|EDS17630.1| hypothetical protein CLORAM_02425 [Clostridium ramosum DSM 1402]
gi|229382406|gb|EEO32497.1| two-component system response regulator [Coprobacillus sp. D7]
Length = 223
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ D+R + L K G+EV+ +NG A + E L + D++MP MD
Sbjct: 1 MKAKVLVVDDEKDIRELINFYLNKEGFEVLEASNGEEALEIFENEYIDLGIIDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL E D+ V+ +T + + KPF +L+ V +L
Sbjct: 61 GFELVENLKE-FKDVPVIMLTAKGESKDKLRGFSVGADDYVVKPFDPTELMARVRAVLKR 119
>gi|298490023|ref|YP_003720200.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298231941|gb|ADI63077.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 242
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKAEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|121535983|ref|ZP_01667776.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121305443|gb|EAX46392.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 231
Score = 162 bits (413), Expect = 1e-38, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +D+ +R L ++G+ V +GA A KV + +++ DI+MP +
Sbjct: 1 MTGKTVLIVDDEKQIREILAIYFTQSGFTVAEAADGAEALIKVEQVKPDIVILDIMMPVL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ ++ + P + ++ +T ++KPF+ +++V V +L
Sbjct: 61 DGFEVCQQIRKYSP-VPIIMLTSRTQDDDRIMGLEIGADDYVTKPFNPKEVVARVKAILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|315605707|ref|ZP_07880740.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312662|gb|EFU60746.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 234
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L +AL G+E + ++G A K +++ D+ MP MDG+E
Sbjct: 10 RVLVVDDEAMLADLLSQALRHEGWETATASDGLDALAKAASFHPDVVILDVQMPRMDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DP + V+F+T AVA ++KPF L ++ V LL
Sbjct: 70 TLERLRAHDPHMPVLFLTARDAVADRVSGLRAGADDYVTKPFDLDEVAARVQALLRR 126
>gi|126658619|ref|ZP_01729765.1| two-component response regulator [Cyanothece sp. CCY0110]
gi|126620056|gb|EAZ90779.1| two-component response regulator [Cyanothece sp. CCY0110]
Length = 243
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|218247106|ref|YP_002372477.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257060175|ref|YP_003138063.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|218167584|gb|ACK66321.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256590341|gb|ACV01228.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 243
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D + L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFHKADPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|312793633|ref|YP_004026556.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312875870|ref|ZP_07735860.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311797351|gb|EFR13690.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|312180773|gb|ADQ40943.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 223
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E
Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGIAMFKNEMPDLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|224476783|ref|YP_002634389.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus carnosus subsp. carnosus TM300]
gi|222421390|emb|CAL28204.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 238
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ + L L AGY V +G A K+ L++ D+++P++D
Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKLDAVQPDLVVLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|116332709|ref|YP_794236.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
gi|116098056|gb|ABJ63205.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus brevis ATCC 367]
Length = 238
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV +G +A V E+ L++ D+++P++D
Sbjct: 1 MPKKILVVDDEKPISDIMKFNLEKEGYEVAVAYDGEAAVQAVEEDVPDLVILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAREIRKKH-DMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
+N
Sbjct: 120 QN 121
>gi|90580619|ref|ZP_01236424.1| hypothetical sensory box sensor histidine kinase/response regulator
[Vibrio angustum S14]
gi|90438277|gb|EAS63463.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium angustum S14]
Length = 1114
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L AGY V + +G A D V+++ L+L DI+MPEM G E+
Sbjct: 707 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQALDIVQQQRPDLILLDIMMPEMSGYEV 766
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +L +M ++ + L+KPF+ +L+ + L
Sbjct: 767 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 822
>gi|313904351|ref|ZP_07837729.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313470901|gb|EFR66225.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 236
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E N+G A V L+L D+++P MDG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFECTIVNDGEEALRAVSSFSPDLILLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R ++ ++ ++ V + KPF ++LV V +L
Sbjct: 64 YEVCREVR-HKSNVPIIMLSAKGEVFDKVLGLEMGADDYMIKPFDSKELVARVKAVLRR 121
>gi|332669166|ref|YP_004452174.1| winged helix family transcriptional regulator [Cellulomonas fimi
ATCC 484]
gi|332338204|gb|AEE44787.1| two component transcriptional regulator, winged helix family
[Cellulomonas fimi ATCC 484]
Length = 242
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + +G +A R+ L++ D+++P+MDG
Sbjct: 11 RLLVVDDEPNIRELLATSLRFAGFEVHAAADGGAALRLARDVEPDLVVLDVMLPDMDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+F+T A ++KPF L ++V + +L
Sbjct: 71 VTRRLREKGQHVPVLFLTARDDTADKVQGLTVGGDDYVTKPFSLEEVVARIRAILRR 127
>gi|89897369|ref|YP_520856.1| hypothetical protein DSY4623 [Desulfitobacterium hafniense Y51]
gi|89336817|dbj|BAE86412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 227
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+ +R + L GY++ +NG SA +KVR++ F L++ D++MP +DG
Sbjct: 2 KILVVDDDERIREIVRLYLEAEGYDIEEADNGNSALEKVRKDSFDLVILDLMMPGLDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T + KPF R+L V +L
Sbjct: 62 VCKVLRKETK-IPIIMLTAKGEENDRVLGFDLGADDYVVKPFSPRELSARVKAVLRR 117
>gi|320160793|ref|YP_004174017.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319994646|dbj|BAJ63417.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 239
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L L AGY V + +NG A + + L++ D++MP +DG
Sbjct: 5 HILVVDDEPRYQHLLRVNLEAAGYLVSTASNGEEALELISSRQPDLVILDVMMPHLDGFS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + ++ +T + KPF +L+ V +L
Sbjct: 65 TCERIRQ-FSSVPIIMLTAKGEEQDRVKGLNVGADDYVVKPFSATELIARVRAVLRR 120
>gi|297203135|ref|ZP_06920532.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297148314|gb|EFH28936.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 240
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L +AGY V +G A + L++ D+++P MDG+E
Sbjct: 12 RVLVVDDDPTVAEVVSGYLDRAGYLVDRAADGPEALARAAAHRPDLVVLDLMLPGMDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 72 VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 127
>gi|42783766|ref|NP_981013.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
gi|222098050|ref|YP_002532107.1| DNA-binding response regulator phop [Bacillus cereus Q1]
gi|229198737|ref|ZP_04325435.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1293]
gi|42739696|gb|AAS43621.1| DNA-binding response regulator PhoP [Bacillus cereus ATCC 10987]
gi|221242108|gb|ACM14818.1| DNA-binding response regulator PhoP [Bacillus cereus Q1]
gi|228584759|gb|EEK42879.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1293]
gi|324328481|gb|ADY23741.1| DNA-binding response regulator PhoP [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 239
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|159027454|emb|CAO89419.1| ycf27 [Microcystis aeruginosa PCC 7806]
Length = 246
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEVV+ +G A + R L++ D++MP++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALETFRTAEPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 126
>gi|332709113|ref|ZP_08429081.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
gi|332352119|gb|EGJ31691.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
Length = 242
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEVV+ +G A + R+ L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYEVVTAADGEEALNTFRDTEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|229013792|ref|ZP_04170920.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides DSM 2048]
gi|228747461|gb|EEL97336.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides DSM 2048]
Length = 239
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|182680204|ref|YP_001834350.1| two component transcriptional regulator [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636087|gb|ACB96861.1| two component transcriptional regulator, winged helix family
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 230
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + AL KAG VV +G+ + + L++ DI MPEMD
Sbjct: 1 MAATILVVDDDPHIREVICFALEKAGMRVVVAEDGSQVLTIMAAQTPDLIVLDIGMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E RR + ++ ++F++ ++KPF R+LV VN +L
Sbjct: 61 GLETCRRIRK-TSEVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILKR 119
>gi|220932165|ref|YP_002509073.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
gi|219993475|gb|ACL70078.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
Length = 227
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+ +R+ L L K + + ++G A KV E L++ D+++PE+
Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + D ++ +T + A L KPF LR+L+ + +L
Sbjct: 61 GEEVCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|89100385|ref|ZP_01173249.1| PhoP [Bacillus sp. NRRL B-14911]
gi|89084904|gb|EAR64041.1| PhoP [Bacillus sp. NRRL B-14911]
Length = 237
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + L L +AGYEV++ +G S D +E L++ D+++P+++
Sbjct: 1 MDKKVLVVDDEQSIVTLLEYNLKQAGYEVITAMDGESGKDFALQERPDLIVLDLMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKQLRQEKIHTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|153940311|ref|YP_001391825.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum F str. Langeland]
gi|152936207|gb|ABS41705.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum F str. Langeland]
gi|295319851|gb|ADG00229.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum F str. 230613]
Length = 232
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ IT ++KPF +R++V V +L
Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|30264659|ref|NP_847036.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
gi|47530129|ref|YP_021478.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
Ancestor']
gi|47564999|ref|ZP_00236042.1| alkaline phosphatase synthesis two-component response regulator
phoP [Bacillus cereus G9241]
gi|49187479|ref|YP_030731.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
Sterne]
gi|49481343|ref|YP_038634.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52140920|ref|YP_085909.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
E33L]
gi|65321956|ref|ZP_00394915.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|118479736|ref|YP_896887.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis str. Al Hakam]
gi|165869762|ref|ZP_02214420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
gi|167633879|ref|ZP_02392202.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
gi|167638246|ref|ZP_02396524.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
gi|170685683|ref|ZP_02876906.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
gi|170705363|ref|ZP_02895827.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
gi|177651214|ref|ZP_02934045.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
gi|190569075|ref|ZP_03021975.1| DNA-binding response regulator PhoP [Bacillus anthracis
Tsiankovskii-I]
gi|196032842|ref|ZP_03100255.1| DNA-binding response regulator PhoP [Bacillus cereus W]
gi|196040861|ref|ZP_03108159.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
gi|196047480|ref|ZP_03114691.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
gi|206977153|ref|ZP_03238052.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
gi|217962068|ref|YP_002340638.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
gi|218905816|ref|YP_002453650.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
gi|225866566|ref|YP_002751944.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
gi|227817373|ref|YP_002817382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
684]
gi|228917227|ref|ZP_04080784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|228929636|ref|ZP_04092654.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228935896|ref|ZP_04098706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228948313|ref|ZP_04110596.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228987836|ref|ZP_04147945.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|229093685|ref|ZP_04224784.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-42]
gi|229124155|ref|ZP_04253347.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 95/8201]
gi|229141314|ref|ZP_04269852.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST26]
gi|229158191|ref|ZP_04286258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 4342]
gi|229186844|ref|ZP_04313999.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BGSC 6E1]
gi|229604309|ref|YP_002868868.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
gi|254687396|ref|ZP_05151252.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
CNEVA-9066]
gi|254724959|ref|ZP_05186742.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A1055]
gi|254736696|ref|ZP_05194402.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
Western North America USA6153]
gi|254741733|ref|ZP_05199420.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Kruger
B]
gi|254754669|ref|ZP_05206704.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
Vollum]
gi|254757501|ref|ZP_05209528.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
Australia 94]
gi|301056094|ref|YP_003794305.1| alkaline phosphatase synthesis response regulator [Bacillus
anthracis CI]
gi|30259334|gb|AAP28522.1| DNA-binding response regulator PhoP [Bacillus anthracis str. Ames]
gi|47505277|gb|AAT33953.1| DNA-binding response regulator PhoP [Bacillus anthracis str. 'Ames
Ancestor']
gi|47557785|gb|EAL16110.1| alkaline phosphatase synthesis two-component response regulator
phoP [Bacillus cereus G9241]
gi|49181406|gb|AAT56782.1| DNA-binding response regulator PhoP [Bacillus anthracis str.
Sterne]
gi|49332899|gb|AAT63545.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51974389|gb|AAU15939.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
E33L]
gi|118418961|gb|ABK87380.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis str. Al Hakam]
gi|164714591|gb|EDR20110.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0488]
gi|167514063|gb|EDR89431.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0193]
gi|167530680|gb|EDR93382.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0442]
gi|170129488|gb|EDS98351.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0389]
gi|170670147|gb|EDT20887.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0465]
gi|172083040|gb|EDT68102.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0174]
gi|190559857|gb|EDV13842.1| DNA-binding response regulator PhoP [Bacillus anthracis
Tsiankovskii-I]
gi|195994271|gb|EDX58226.1| DNA-binding response regulator PhoP [Bacillus cereus W]
gi|196021695|gb|EDX60391.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB108]
gi|196028315|gb|EDX66924.1| DNA-binding response regulator PhoP [Bacillus cereus NVH0597-99]
gi|206744638|gb|EDZ56046.1| DNA-binding response regulator PhoP [Bacillus cereus H3081.97]
gi|217063985|gb|ACJ78235.1| DNA-binding response regulator PhoP [Bacillus cereus AH187]
gi|218539540|gb|ACK91938.1| DNA-binding response regulator PhoP [Bacillus cereus AH820]
gi|225790365|gb|ACO30582.1| DNA-binding response regulator PhoP [Bacillus cereus 03BB102]
gi|227003433|gb|ACP13176.1| DNA-binding response regulator PhoP [Bacillus anthracis str. CDC
684]
gi|228596581|gb|EEK54246.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BGSC 6E1]
gi|228625149|gb|EEK81909.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 4342]
gi|228642095|gb|EEK98388.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST26]
gi|228659457|gb|EEL15105.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 95/8201]
gi|228689570|gb|EEL43378.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-42]
gi|228771884|gb|EEM20341.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar tochigiensis BGSC
4Y1]
gi|228811300|gb|EEM57638.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228823664|gb|EEM69486.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar andalousiensis BGSC
4AW1]
gi|228830023|gb|EEM75642.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pondicheriensis
BGSC 4BA1]
gi|228842428|gb|EEM87519.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pulsiensis BGSC
4CC1]
gi|229268717|gb|ACQ50354.1| DNA-binding response regulator PhoP [Bacillus anthracis str. A0248]
gi|300378263|gb|ADK07167.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
biovar anthracis str. CI]
Length = 239
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|168180586|ref|ZP_02615250.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum NCTC 2916]
gi|226949883|ref|YP_002804974.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A2 str. Kyoto]
gi|182668498|gb|EDT80477.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum NCTC 2916]
gi|226840760|gb|ACO83426.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A2 str. Kyoto]
Length = 232
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ IT ++KPF +R++V V +L
Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|325003645|ref|ZP_08124757.1| two-component response regulator [Pseudonocardia sp. P1]
Length = 232
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDDD +R + + LG AGY V+ +G + E ++ D+++P MDG++
Sbjct: 6 RVLVVEDDDTVREVIRRYLGDAGYGVLEVADGRAGLWWAVEHAPDAVVLDLMLPGMDGLQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P L ++ +T + KPF R+LV + +L
Sbjct: 66 VCRELRARRPQLPIVVLTALGEEEDRVRGLQLGADDYVVKPFSPRELVLRIGSVLRR 122
>gi|222151606|ref|YP_002560762.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Macrococcus caseolyticus JCSC5402]
gi|222120731|dbj|BAH18066.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Macrococcus caseolyticus JCSC5402]
Length = 237
Score = 162 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L ++G+EV++ +G K+ E +++ D+++P+MD
Sbjct: 1 MSQKVLVVDDEQSIVTLLQYNLEQSGFEVITAFDGEEGLSKIFSEDPDIVVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ +T ++KPF R++ + +L
Sbjct: 61 GVEVCKAVRSEKNQVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARLKAILRR 120
>gi|120405794|ref|YP_955623.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|160012530|sp|A1TEL7|MPRA_MYCVP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|119958612|gb|ABM15617.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 231
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L ++L GY V +G A D + + ++ D++MP +D
Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGREALDLIASDRPDAVVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|67921096|ref|ZP_00514615.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67857213|gb|EAM52453.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 243
Score = 162 bits (412), Expect = 2e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D E L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDIFHEAIPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|78043342|ref|YP_361360.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77995457|gb|ABB14356.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
Length = 236
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV++ NG A + +E L++ D +MPEM
Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + + ++ +T + KPF LR+L + +L
Sbjct: 61 GIEVLREIRKK-SQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR 119
>gi|294630116|ref|ZP_06708676.1| DNA-binding response regulator [Streptomyces sp. e14]
gi|292833449|gb|EFF91798.1| DNA-binding response regulator [Streptomyces sp. e14]
Length = 246
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG
Sbjct: 12 TQRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ARR ++ +T V L KPF L +L + LL
Sbjct: 72 LTAARRIRGTGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 131
Query: 122 N 122
+
Sbjct: 132 S 132
>gi|291547005|emb|CBL20113.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 229
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + L +L + G EV +G A +K + + ++L D+++P+MD
Sbjct: 1 MSRKVLVVDDEKLIVKGLRFSLEQDGMEVDCAYDGEEALEKAKAGEYDIILLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSNVPIIMLTAKGEDMDKILGLEYGADDYVTKPFNILEVKARIKAIIRR 119
>gi|229073625|ref|ZP_04206740.1| Two-component response regulator [Bacillus cereus F65185]
gi|229182223|ref|ZP_04309505.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228601238|gb|EEK58777.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228709480|gb|EEL61539.1| Two-component response regulator [Bacillus cereus F65185]
Length = 342
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 175 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233
>gi|320160915|ref|YP_004174139.1| putative OmpR family two-component system response regulator
[Anaerolinea thermophila UNI-1]
gi|319994768|dbj|BAJ63539.1| putative OmpR family two-component system response regulator
[Anaerolinea thermophila UNI-1]
Length = 244
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D++ M RF+ L G++V+S G A +KVR E L+L D+++P++DG
Sbjct: 7 NRSILVVDDEERMVRFIRLNLEHDGFQVISAYRGYEALEKVRTEMPDLVLLDVMLPDLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + V+ +T ++KPF R+LV+ V +L
Sbjct: 67 FEVLKLIRE-SSNTPVIMLTAKGEEDDRVRGLELGADDYITKPFSPRELVSRVKAVLRR 124
>gi|320012489|gb|ADW07339.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 275
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDGI 62
++L+ +DD + LG+AGY+V ++G +A + V L++ D+++P MDG
Sbjct: 44 RVLVVDDDPTVAEVAAGYLGRAGYDVGRADDGPAALESVAALRPDLVVLDLMLPGGMDGF 103
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 104 EVCRRIRARGP-VPVIMLTARGDEDDRILGLETGADDYVTKPFSPRELVLRVEAVLRR 160
>gi|291484740|dbj|BAI85815.1| two-component response regulator [Bacillus subtilis subsp. natto
BEST195]
Length = 251
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE
Sbjct: 19 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 79 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 134
>gi|288556018|ref|YP_003427953.1| two-component response regulator [Bacillus pseudofirmus OF4]
gi|288547178|gb|ADC51061.1| two-component response regulator [Bacillus pseudofirmus OF4]
Length = 238
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D+D +RR L L + YEV NG A E + L+L DI+MP
Sbjct: 1 MEKEAKILVVDDEDRIRRLLKMYLERENYEVEEAENGEKALSLALEIDYDLILLDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ + + VM +T A + KPF R++V V LL
Sbjct: 61 MDGIEVCQELRK-TKATPVMMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|161524068|ref|YP_001579080.1| two component transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|160341497|gb|ABX14583.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans ATCC 17616]
Length = 305
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 65 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 124
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 125 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 184
Query: 121 K 121
+
Sbjct: 185 R 185
>gi|170756077|ref|YP_001782072.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum B1 str. Okra]
gi|169121289|gb|ACA45125.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum B1 str. Okra]
Length = 232
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L GY + NG A + +EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ IT ++KPF +R+++ V +L
Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMIARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|289643472|ref|ZP_06475591.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289506724|gb|EFD27704.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 290
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + + L AG++V +G +A L++ D+++P +DGIE
Sbjct: 54 RVLVVDDDPTVAEVVDRYLRNAGFDVDRAADGLTALRMAETTVPDLVVLDLMLPGIDGIE 113
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+ +T A ++KPF R+L V +L
Sbjct: 114 VCRRLREQRP-VPVIMLTARGEEADRVAGLETGADDYVTKPFSPRELTLRVRSVLRR 169
>gi|205375565|ref|ZP_03228353.1| YycF [Bacillus coahuilensis m4-4]
Length = 236
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GY V +G A E ++L DI++P+ D
Sbjct: 1 MDKKILVVDDEKPIADILQFNLKKEGYTVYCAYDGEEAIKMAEEVQPDMILLDIMLPKRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+LV V L
Sbjct: 61 GMEVCRELRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 119
>gi|254421179|ref|ZP_05034897.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196188668|gb|EDX83632.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 242
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEALDTFRNTIPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|163942322|ref|YP_001647206.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229062273|ref|ZP_04199594.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH603]
gi|229135424|ref|ZP_04264211.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST196]
gi|229169315|ref|ZP_04297025.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH621]
gi|163864519|gb|ABY45578.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228614078|gb|EEK71193.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH621]
gi|228647985|gb|EEL04033.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST196]
gi|228717001|gb|EEL68682.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH603]
Length = 239
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|77165864|ref|YP_344389.1| phosphate regulon transcriptional regulatory protein phoB
[Nitrosococcus oceani ATCC 19707]
gi|254434533|ref|ZP_05048041.1| phosphate regulon transcriptional regulatory protein PhoB
[Nitrosococcus oceani AFC27]
gi|76884178|gb|ABA58859.1| two component transcriptional regulator, winged helix family
[Nitrosococcus oceani ATCC 19707]
gi|207090866|gb|EDZ68137.1| phosphate regulon transcriptional regulatory protein PhoB
[Nitrosococcus oceani AFC27]
Length = 229
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R L AL + GY + +G A+ ++ E L+L D ++P +
Sbjct: 1 MVATILVVDDEAAIREMLGFALTQEGYYYQAAADGEQAWQRINESHPDLILLDWMLPGIS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L V+ +T ++KPF +L+ + +L
Sbjct: 61 GVDLARRLKREPSTRELPVIMLTARDEEEDKVRGLNVGADDYITKPFSPTELIARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|183984499|ref|YP_001852790.1| two component response transcriptional regulatory protein MprA
[Mycobacterium marinum M]
gi|183177825|gb|ACC42935.1| mycobacterial persistence regulator MprA [Mycobacterium marinum M]
Length = 232
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|284052014|ref|ZP_06382224.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
gi|291569758|dbj|BAI92030.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 243
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG
Sbjct: 5 KERILVVDDEASIRRILETRLSMIGYDVVTAADGEEALETFRLTEPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|148653918|ref|YP_001281011.1| osmolarity response regulator [Psychrobacter sp. PRwf-1]
gi|148573002|gb|ABQ95061.1| two component transcriptional regulator, winged helix family
[Psychrobacter sp. PRwf-1]
Length = 248
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P DG
Sbjct: 13 THRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I + +R E + D+ ++ +T + + L KPF+ ++L+ + +L
Sbjct: 73 IAICKRLREENSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRH 132
Query: 122 N 122
+
Sbjct: 133 S 133
>gi|229032233|ref|ZP_04188206.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1271]
gi|228729013|gb|EEL80016.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1271]
Length = 239
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|30022664|ref|NP_834295.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus ATCC 14579]
gi|206969884|ref|ZP_03230838.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
gi|218233317|ref|YP_002369385.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
gi|218899742|ref|YP_002448153.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
gi|228903106|ref|ZP_04067242.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 4222]
gi|228910413|ref|ZP_04074228.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 200]
gi|228923333|ref|ZP_04086621.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228941768|ref|ZP_04104315.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228954858|ref|ZP_04116878.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228960858|ref|ZP_04122491.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228967686|ref|ZP_04128706.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar sotto str. T04001]
gi|228974692|ref|ZP_04135258.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228981286|ref|ZP_04141586.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis Bt407]
gi|229048296|ref|ZP_04193864.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH676]
gi|229072091|ref|ZP_04205300.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus F65185]
gi|229081841|ref|ZP_04214333.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-2]
gi|229112054|ref|ZP_04241597.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-15]
gi|229129873|ref|ZP_04258839.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-Cer4]
gi|229147149|ref|ZP_04275507.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST24]
gi|229152784|ref|ZP_04280967.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1550]
gi|229180908|ref|ZP_04308243.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 172560W]
gi|229192790|ref|ZP_04319748.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 10876]
gi|296505061|ref|YP_003666761.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis BMB171]
gi|29898223|gb|AAP11496.1| Alkaline phosphatase synthesis two-component response regulator
phoP [Bacillus cereus ATCC 14579]
gi|206735572|gb|EDZ52740.1| DNA-binding response regulator PhoP [Bacillus cereus AH1134]
gi|218161274|gb|ACK61266.1| DNA-binding response regulator PhoP [Bacillus cereus B4264]
gi|218542946|gb|ACK95340.1| DNA-binding response regulator PhoP [Bacillus cereus G9842]
gi|228590629|gb|EEK48490.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus ATCC 10876]
gi|228602465|gb|EEK59951.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus 172560W]
gi|228630604|gb|EEK87250.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus m1550]
gi|228636259|gb|EEK92731.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-ST24]
gi|228653564|gb|EEL09436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus BDRD-Cer4]
gi|228671377|gb|EEL26678.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-15]
gi|228701429|gb|EEL53923.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-2]
gi|228711025|gb|EEL62991.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus F65185]
gi|228723021|gb|EEL74398.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH676]
gi|228778486|gb|EEM26753.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis Bt407]
gi|228785095|gb|EEM33108.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar thuringiensis str.
T01001]
gi|228792019|gb|EEM39601.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar sotto str. T04001]
gi|228798754|gb|EEM45734.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|228804847|gb|EEM51446.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar kurstaki str.
T03a001]
gi|228817980|gb|EEM64058.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228836287|gb|EEM81640.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis serovar huazhongensis BGSC
4BD1]
gi|228849179|gb|EEM94018.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 200]
gi|228856515|gb|EEN01039.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus thuringiensis IBL 4222]
gi|296326113|gb|ADH09041.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis BMB171]
gi|326942372|gb|AEA18268.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis serovar chinensis CT-43]
Length = 239
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|332968745|gb|EGK07795.1| response regulator [Psychrobacter sp. 1501(2011)]
Length = 248
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +DD +R L + L G+ V + ++G+ ++ E FSL++ D+++P DG
Sbjct: 13 THRILVVDDDARLRSLLQRFLEDDGFVVRTAHDGSQMDKLMQRELFSLVVLDLMLPGEDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I + +R E + D+ ++ +T + + L KPF+ ++L+ + +L
Sbjct: 73 ISICKRLREDNSDIPIIMLTAKGSDSDRIAGLEAGADDYLPKPFNPKELLARIKAVLRRH 132
Query: 122 N 122
+
Sbjct: 133 S 133
>gi|258514817|ref|YP_003191039.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778522|gb|ACV62416.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 229
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL +DD + + L +LGK G+EV++ ++G A K R+ L++ D++MP MD
Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E ++ ++ ++ ++ +KPF +L V +L
Sbjct: 61 GFETYQKLKAQR-EVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR 119
>gi|227364325|ref|ZP_03848418.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
gi|227543739|ref|ZP_03973788.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
gi|300908804|ref|ZP_07126267.1| response regulator [Lactobacillus reuteri SD2112]
gi|325683524|ref|ZP_08163040.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
gi|227070638|gb|EEI08968.1| DNA-binding response regulator [Lactobacillus reuteri MM2-3]
gi|227186307|gb|EEI66378.1| DNA-binding response regulator [Lactobacillus reuteri CF48-3A]
gi|300894211|gb|EFK87569.1| response regulator [Lactobacillus reuteri SD2112]
gi|324977874|gb|EGC14825.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
Length = 241
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEVV +G +A ++V E L++ D+++P++D
Sbjct: 7 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKID 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R + ++ +T + ++KPF R+LV V L
Sbjct: 67 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 125
Query: 121 K 121
+
Sbjct: 126 Q 126
>gi|206973171|ref|ZP_03234093.1| two component transcriptional regulator, winged helix family
[Bacillus cereus AH1134]
gi|206732055|gb|EDZ49255.1| two component transcriptional regulator, winged helix family
[Bacillus cereus AH1134]
Length = 342
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 115 MESKILIVDDDKEIRNLISAYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 174
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 175 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 233
>gi|297584465|ref|YP_003700245.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297142922|gb|ADH99679.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 237
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +D++ +RR L L + Y+V NG A K + + L++ D++MP MDG
Sbjct: 4 DARILVVDDEERIRRLLKMYLERENYDVDDAENGEIALKKALDYDYDLIVLDLMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ + + ++ +T A + KPF R++V V LL
Sbjct: 64 IEVCEKIRKQ-KATPIVMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 121
>gi|295394513|ref|ZP_06804736.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
gi|294972692|gb|EFG48544.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
Length = 252
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG
Sbjct: 13 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGADALRLAEQNDPDLLVLDVMLPDMDGFT 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + V+F+T + ++KPF L ++V + +L +
Sbjct: 73 VTRRLRQAGKHMPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 131
>gi|317968094|ref|ZP_07969484.1| two-component response regulator [Synechococcus sp. CB0205]
Length = 249
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG
Sbjct: 9 KETILVVDDEPSIRRILETRLSMIGYQVVTACDGQEALEAFRNTNPDLVVLDVMMPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 126
>gi|313112755|ref|ZP_07798403.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310624954|gb|EFQ08261.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 331
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + + L +GY +G +A ++ F L++ D++MP MDG+
Sbjct: 106 KILIVDDEPRIRELIREHLQYSGYICEEAADGTAALTQLSGGAFDLVILDLMMPFMDGMT 165
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + KPF R+LV V +L
Sbjct: 166 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVKAVLNR 222
>gi|257440003|ref|ZP_05615758.1| two-component response regulator [Faecalibacterium prausnitzii
A2-165]
gi|257197551|gb|EEU95835.1| two-component response regulator [Faecalibacterium prausnitzii
A2-165]
Length = 299
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + + L AGY +G++A + F L++ D++MP MDG+
Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + KPF R+LV V +L
Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 190
>gi|302388870|ref|YP_003824691.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
gi|302199498|gb|ADL07068.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
Length = 233
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+D +RRF++ L + GYEV+ +G A K E L++ D+++P MDG E
Sbjct: 8 RILVVEDEDSIRRFIVINLKRNGYEVIEAASGEEALMKAMEGKPDLVVLDVMLPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E PD+ V+ +T + KPF+ +L + +L
Sbjct: 68 VCRLLREKLPDMAVIMLTARGQDIDKIMGLELGADDYVVKPFNPLELTARIRAVLRR 124
>gi|239930403|ref|ZP_04687356.1| two-component systen response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291438761|ref|ZP_06578151.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291341656|gb|EFE68612.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 246
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 52/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY+ +GA A +K LL+ DI MP MDG+
Sbjct: 13 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKAASYRPDLLVLDIQMPRMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L + LL
Sbjct: 73 TAARRIRSAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 130
>gi|229175297|ref|ZP_04302812.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus MM3]
gi|228608129|gb|EEK65436.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus MM3]
Length = 239
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|328952021|ref|YP_004369355.1| response regulator receiver sensor signal transduction histidine
kinase [Desulfobacca acetoxidans DSM 11109]
gi|328452345|gb|AEB08174.1| response regulator receiver sensor signal transduction histidine
kinase [Desulfobacca acetoxidans DSM 11109]
Length = 382
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+A+D+ D L K L GY++ + +G A V +E LL+ DI+MP++D
Sbjct: 27 MKKKILIADDNPDNVELLRKRLSAQGYQIAAAFDGEEALQAVLKENPDLLILDIMMPKLD 86
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + D +L V+ +T + ++KPF+ ++L+ V L+
Sbjct: 87 GYEVLRRLKKQDEYRNLPVILLTAKKEIPDKLKGLDIGADDYITKPFNPQELLARVRSLM 146
Query: 119 TIK 121
++
Sbjct: 147 ALR 149
>gi|89097672|ref|ZP_01170560.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
gi|89087531|gb|EAR66644.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
Length = 235
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R+ ++ L ++ +EV+ +G +A ++ SL++ D+++P+MDG E
Sbjct: 5 KILVVEDELPIRKLILFNLERSNFEVLEAGDGKTALQLAEDKNPSLVVLDVMLPDMDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E PDL ++ ++ + KPF+ +L + +L
Sbjct: 65 ICARLRERHPDLPIIILSARGQDMDKIMGLEIGADDYIVKPFNPLELAARIRSVLRR 121
>gi|15614143|ref|NP_242446.1| two-component response regulator [Bacillus halodurans C-125]
gi|10174197|dbj|BAB05299.1| two-component response regulator [Bacillus halodurans C-125]
Length = 238
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D+D +R L L + Y+V ++G A +K + ++L D++MPE
Sbjct: 1 MEKEAKILVVDDEDRIRNLLKMYLEREAYDVEEASDGKEALEKALAFDYDVILLDLMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ ++ + ++ +T A + KPF R++V V LL
Sbjct: 61 MDGIEVCQKLRKQ-KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|221310230|ref|ZP_03592077.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
gi|221314553|ref|ZP_03596358.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221319475|ref|ZP_03600769.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221323751|ref|ZP_03605045.1| two-component response regulator [Bacillus subtilis subsp. subtilis
str. SMY]
gi|255767498|ref|NP_390193.2| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
gi|251757323|sp|P35163|RESD_BACSU RecName: Full=Transcriptional regulatory protein resD
gi|225185126|emb|CAB14244.2| two-component response regulator [Bacillus subtilis subsp. subtilis
str. 168]
Length = 240
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|6687469|emb|CAB64972.1| VicR protein [Enterococcus faecalis]
Length = 283
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+
Sbjct: 51 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 110
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 111 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 167
>gi|410141|gb|AAA67497.1| ORFX17 [Bacillus subtilis subsp. subtilis str. 168]
Length = 240
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|261368149|ref|ZP_05981032.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
15176]
gi|282569913|gb|EFB75448.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
15176]
Length = 228
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD ++ L L K GY V ++G +A + + L+L D++MP MDG
Sbjct: 3 NEKILVVDDDKNICELLRLYLVKEGYNVTMVHDGNAALTEFDKLHPDLVLLDVMMPVMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ D + ++ +T + KPF +++ + +L
Sbjct: 63 WEVCRKIRAKD-NTPIIMLTAKGETYDKVLGLELGADDYIVKPFDAKEVTARIKAVLRR 120
>gi|163939206|ref|YP_001644090.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163861403|gb|ABY42462.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 223
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MSKYNVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + + D+ ++F+T + + KPF +L+ + +L
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|37522708|ref|NP_926085.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35213710|dbj|BAC91080.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 229
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD+ + + L K L GY V +G +A + RE L++ D+++P M
Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++ +T LSKPF++ +L+ + +L
Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120
Query: 121 KN 122
+
Sbjct: 121 TH 122
>gi|302552415|ref|ZP_07304757.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302470033|gb|EFL33126.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 245
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +GA A DK L++ DI MP MDG+
Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALDKAAAYRPDLVVLDIQMPRMDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130
>gi|118473019|ref|YP_889726.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
gi|160012470|sp|A0R3I8|MPRA_MYCS2 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|118174306|gb|ABK75202.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
Length = 230
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L ++L GY V +G A D + L+ D++MP +D
Sbjct: 1 MAVRILVVDDDRAVRESLRRSLSFNGYSVELAQDGVEALDAITNNRPDALILDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|256371361|ref|YP_003109185.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
gi|256007945|gb|ACU53512.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
Length = 237
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL GY+V ++G A D +R LL+ D++MP MDG
Sbjct: 12 RVLVVDDELPITELLQMALTFEGYDVSVASSGREALDVLRTVKPDLLILDVMMPGMDGFT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D+ V+ +T AV + ++KPF L +LV V +L
Sbjct: 72 LLRRLREERNDVPVLLLTAKDAVEDRVQGLQLGSDDYVTKPFSLAELVARVEAILRR 128
>gi|229019811|ref|ZP_04176613.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1273]
gi|229026037|ref|ZP_04182420.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1272]
gi|228735253|gb|EEL85865.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1272]
gi|228741482|gb|EEL91680.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus AH1273]
Length = 239
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|125973803|ref|YP_001037713.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|125714028|gb|ABN52520.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|316940004|gb|ADU74038.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 228
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + + K G+EVV+ NG+ A + R E ++++ DI++P DG +
Sbjct: 6 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ V+ ++ L KPF ++LV V +L
Sbjct: 66 VCREIRKI-SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 121
>gi|146297008|ref|YP_001180779.1| two component transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410584|gb|ABP67588.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 223
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EV+ +NG+ + E L++ DI++P+ DG E
Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVIIAHNGSDGITMFKHEMPDLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCREIRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|315604878|ref|ZP_07879936.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313417|gb|EFU61476.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 227
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L G+ VV C +G+ A + +E L+L D+++P MD
Sbjct: 1 MSSRILVVDDDLALAEMIGIVLQNEGFRVVFCGDGSQALAQFQEHHPDLVLLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + D+ ++ +T + + + KPF ++LV V L
Sbjct: 61 GFDVCRAIRHV-SDVPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|194467421|ref|ZP_03073408.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|194454457|gb|EDX43354.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
Length = 235
Score = 161 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEVV +G A ++V E L++ D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEVALEQVEAENPDLIILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A+R + ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAKRVRAKH-TMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|228477430|ref|ZP_04062066.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
gi|228250865|gb|EEK10053.1| transcriptional regulatory protein [Streptococcus salivarius SK126]
Length = 235
Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|118619772|ref|YP_908104.1| two component response transcriptional regulatory protein MprA
[Mycobacterium ulcerans Agy99]
gi|160012527|sp|A0PWB4|MPRA_MYCUA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|118571882|gb|ABL06633.1| mycobacterial persistence regulator MprA [Mycobacterium ulcerans
Agy99]
Length = 232
Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +D
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|168187034|ref|ZP_02621669.1| transcriptional regulatory protein ResD [Clostridium botulinum C
str. Eklund]
gi|169295053|gb|EDS77186.1| transcriptional regulatory protein ResD [Clostridium botulinum C
str. Eklund]
Length = 228
Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD
Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQGAFFEYKPDLVLLDVMLPHMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + + V+ +T + + KPF ++L+ + +L
Sbjct: 64 GIDVLKWIRKE-SETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122
Query: 121 KN 122
N
Sbjct: 123 YN 124
>gi|322372853|ref|ZP_08047389.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
gi|321277895|gb|EFX54964.1| DNA-binding response regulator VicR [Streptococcus sp. C150]
Length = 236
Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAENPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|312862953|ref|ZP_07723193.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus vestibularis F0396]
gi|322516692|ref|ZP_08069601.1| response regulator [Streptococcus vestibularis ATCC 49124]
gi|311101813|gb|EFQ60016.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus vestibularis F0396]
gi|322124725|gb|EFX96163.1| response regulator [Streptococcus vestibularis ATCC 49124]
Length = 235
Score = 161 bits (410), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ E L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAEKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|317132020|ref|YP_004091334.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315469999|gb|ADU26603.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 229
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L L K GY V S +G A K + L+L DI++P MDG +
Sbjct: 5 KILVVDDDRNINELLRLYLEKEGYSVASTYDGVDAIKKFEDHKPDLVLLDIMLPGMDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + V+ IT + KPF +++V + +L
Sbjct: 65 VCREIRKK-SEKPVIMITAKGETFDKVLGLELGADDYIVKPFDAKEVVARIKAVLRR 120
>gi|302543576|ref|ZP_07295918.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
53653]
gi|302461194|gb|EFL24287.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
53653]
Length = 246
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R + +AL GYEV + +G +A ++ EEP L+L ++++P +DG+
Sbjct: 6 RILVVDDEPSVREAIGRALRFEGYEVDTAGDGVAALRRIEEEPPDLVLLEVMLPGLDGLA 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + +M +TG +V L KP+ +L+ V LL
Sbjct: 66 VARRLRASGRTVPIMMVTGRDSVGDRIVGLDNGADDYLVKPYASEELLARVRALLRR 122
>gi|256786760|ref|ZP_05525191.1| response regulator [Streptomyces lividans TK24]
gi|289770653|ref|ZP_06530031.1| response regulator [Streptomyces lividans TK24]
gi|289700852|gb|EFD68281.1| response regulator [Streptomyces lividans TK24]
Length = 280
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L +AGY V +G A + L++ D+++P MDG+E
Sbjct: 54 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 113
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 114 VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 167
>gi|261419126|ref|YP_003252808.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319765943|ref|YP_004131444.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261375583|gb|ACX78326.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317110809|gb|ADU93301.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 224
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMDG E
Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D D+ ++ +T L KPF +LV V LL
Sbjct: 63 LCRELRDYD-DVPILMLTAKGETKQKVKGFELGADDYLVKPFDPLELVARVKALLKR 118
>gi|229918113|ref|YP_002886759.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229469542|gb|ACQ71314.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 229
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 67/125 (53%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D++ MR L+ L K GYE V+ +NG A ++++EE F L+L D++MP
Sbjct: 1 MSESMFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E+DG+ R E ++ ++ +T + ++KPF R+L+ +
Sbjct: 61 ELDGLTACMRIRE-FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEAT 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRTH 124
>gi|52786788|ref|YP_092617.1| PhoP [Bacillus licheniformis ATCC 14580]
gi|163119589|ref|YP_080203.2| two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|319647320|ref|ZP_08001542.1| PhoP protein [Bacillus sp. BT1B_CT2]
gi|52349290|gb|AAU41924.1| PhoP [Bacillus licheniformis ATCC 14580]
gi|145903099|gb|AAU24565.2| two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|317390667|gb|EFV71472.1| PhoP protein [Bacillus sp. BT1B_CT2]
Length = 240
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D++ + L L ++GY VV+ +G + K EE L++ D+++P+MD
Sbjct: 1 MSKKILVVDDEESIVTLLKYNLERSGYHVVTAMDGEAGLLKAIEEKPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++ V +L
Sbjct: 61 GIEVCKELRQKKLMYPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVKAILRR 120
>gi|224367365|ref|YP_002601528.1| two-component DNA-binding response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223690081|gb|ACN13364.1| two-component DNA-binding response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 233
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D+ D+ + L + GY + +G A + E L++ D+++P +DG
Sbjct: 3 NEKILIVDDERDIVELVRFNLKREGYHTLVAFSGEEALSMAKREMPDLVVLDLMLPGIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR + ++ ++ +T + +SKPF R+LV + +L
Sbjct: 63 FEVTRRIRGNAVTVEIPIVMLTAKGEESDIVTGLEIGANDYISKPFSPRELVARIRGILR 122
Query: 120 IK 121
+
Sbjct: 123 RR 124
>gi|148273519|ref|YP_001223080.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831449|emb|CAN02409.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 283
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + + + L +G++V + +G A E L++ D ++P +DG+
Sbjct: 31 RRILVVEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGL 90
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P+ + V+ +T + L+KPF R+LV V +L
Sbjct: 91 EVCRRIRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 150
>gi|319940657|ref|ZP_08015000.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
3_1_45B]
gi|319806023|gb|EFW02781.1| hypothetical protein HMPREF9464_00219 [Sutterella wadsworthensis
3_1_45B]
Length = 241
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++ILL +D+ ++ + + L GYE S +G A DK+ L++ D++MP MD
Sbjct: 1 MNKRILLVDDERNLNQLIATNLKFEGYETESAYSGIEAIDKLGRFSPDLVVLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + V+ +T V L KPF + +L + +L
Sbjct: 61 GFEVLEHLR-HASSIPVILLTAKNRVDDRIRGLTLGADDYLGKPFAIDELTARIEAVLRR 119
>gi|300742302|ref|ZP_07072323.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
gi|300381487|gb|EFJ78049.1| DNA-binding response regulator PhoP [Rothia dentocariosa M567]
Length = 240
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP
Sbjct: 7 MSAEAKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPG 66
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ RR + V+F+T A ++KPF L +++ + +L
Sbjct: 67 MDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAIL 126
Query: 119 TI-KN 122
+N
Sbjct: 127 RRSRN 131
>gi|118443576|ref|YP_877112.1| transcriptional regulator [Clostridium novyi NT]
gi|118134032|gb|ABK61076.1| transcriptional regulatory protein [Clostridium novyi NT]
Length = 228
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD
Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTECCYDGKSAQTAFYEYKPDLVLLDVMLPHMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + + V+ +T + + KPF ++L+ + +L
Sbjct: 64 GIDVLKWIRKEC-ETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122
Query: 121 KN 122
N
Sbjct: 123 YN 124
>gi|329116636|ref|ZP_08245353.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parauberis NCFD 2020]
gi|326907041|gb|EGE53955.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parauberis NCFD 2020]
Length = 239
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +LL +D++ + R L L K GY+ +G SA E F +L DI++P++D
Sbjct: 1 MKKHVLLVDDEEHILRLLDYHLAKEGYQTELVGDGRSALKLAETEHFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + L+KPF R+L+ V +L
Sbjct: 61 GIEVCKRIRAKGITTPIMMVSAKGDEFDKVLALELGADDYLTKPFSPRELIARVKAILRR 120
>gi|311112222|ref|YP_003983444.1| two component response regulator [Rothia dentocariosa ATCC 17931]
gi|310943716|gb|ADP40010.1| two component response regulator [Rothia dentocariosa ATCC 17931]
Length = 234
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K+L+ +D+ ++ L +L AG+EVV+ NG A +K E L++ D++MP
Sbjct: 1 MSAEAKLLVVDDEFNILELLATSLRFAGFEVVTAGNGREAIEKAENEQPDLIVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ RR + V+F+T A ++KPF L +++ + +L
Sbjct: 61 MDGFEVTRRLRDAGRTYPVLFLTAKDATEDKVAGLGAGGDDYVTKPFSLDEVIARIRAIL 120
Query: 119 TI-KN 122
+N
Sbjct: 121 RRSRN 125
>gi|302554749|ref|ZP_07307091.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302472367|gb|EFL35460.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 249
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L +AGY V ++G +A + L++ D+++P MDG+E
Sbjct: 16 RILVVDDDPTVAEVVAGYLDRAGYLVDRADDGPTALTRAAAHWPDLVVLDLMLPGMDGLE 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 76 VCRRMRGHGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 131
>gi|256004535|ref|ZP_05429514.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281417959|ref|ZP_06248979.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|255991540|gb|EEU01643.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281409361|gb|EFB39619.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
Length = 230
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + + K G+EVV+ NG+ A + R E ++++ DI++P DG +
Sbjct: 8 KVLVIDDDVNICELIRLYMEKEGFEVVTVYNGSKALEVFRNEAPNIVILDIMLPGADGWQ 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ V+ ++ L KPF ++LV V +L
Sbjct: 68 VCREIRKI-SNIPVIMLSAKGETFDKVLGLELGADDYLVKPFEPKELVARVKAVLRR 123
>gi|29830959|ref|NP_825593.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29608073|dbj|BAC72128.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 249
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L +AGY V +G +A + L++ D+++P MDG+E
Sbjct: 22 RVLVVDDDPTVAEVVSGYLDRAGYVVDRAEDGPTALARAAAHWPDLVVLDLMLPGMDGLE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 82 VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 137
>gi|332286633|ref|YP_004418544.1| phosphate regulon two-component response regulator [Pusillimonas
sp. T7-7]
gi|330430586|gb|AEC21920.1| phosphate regulon two-component response regulator [Pusillimonas
sp. T7-7]
Length = 233
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSTTILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI LAR E + V+ +T A + ++KPF ++L+ + +L
Sbjct: 61 GITLARTLRSDERTRHVPVIMLTAKGAEHDKVEGLEAGADDYITKPFSPKELIARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|311032226|ref|ZP_07710316.1| two-component response regulator WalR [Bacillus sp. m3-13]
Length = 233
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K GYEV +G A +KV E L+L DI++P+ D
Sbjct: 1 MEKKILVVDDEKPIADILKFNLQKEGYEVYCAYDGEEAVNKVEEVRPDLILLDIMLPQRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|307328971|ref|ZP_07608139.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306885333|gb|EFN16351.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 274
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + LG+AG+ V +G A + L++ D+++P MDG+E
Sbjct: 9 RVLVVDDDPTVAEVVAGYLGRAGFAVDQAADGPGALARAAARWPDLVVLDLMLPGMDGLE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P + V+ +T ++KPF R+LV V +L
Sbjct: 69 VCRALRGRGP-VPVIMLTARGDEEDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124
>gi|56964476|ref|YP_176207.1| two-component response regulator of alkaline phosphatase synthesis
[Bacillus clausii KSM-K16]
gi|56910719|dbj|BAD65246.1| two-component response regulator of alkaline phosphatase synthesis
[Bacillus clausii KSM-K16]
Length = 240
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L +AG+EV + +G + +D+ +E F L++ D+++P MD
Sbjct: 1 MAKRILVVDDEPSISTLLQYNLEQAGFEVETKLDGQAGFDRAKEADFDLIILDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + + ++ +T ++KPF R++ V +L
Sbjct: 61 GMDVCRQLRQEQIFVPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVTARVRAILRR 120
>gi|186683435|ref|YP_001866631.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186465887|gb|ACC81688.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 247
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ +RR L L GY VV+ ++G A E L++ D++MP++DG
Sbjct: 10 TILVVDDEASIRRILQTRLEMIGYHVVTASDGEEALSAWSRETPDLIVLDVMMPKLDGYG 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D+ ++ +T A VA + KPF ++L + LL +
Sbjct: 70 VCLELRKQ-SDVPIIMLTALADVADRITGLELGADDYMIKPFSPKELEARIASLLRRR 126
>gi|320009468|gb|ADW04318.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 243
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 50/120 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ +D+ +R L ++L GY +G A K L++ DI MP MDG+
Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKAESYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 69 TAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128
>gi|119961724|ref|YP_947342.1| two-component system response regulator [Arthrobacter aurescens
TC1]
gi|119948583|gb|ABM07494.1| two-component system response regulator [Arthrobacter aurescens
TC1]
Length = 274
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++ILL ED+ + + L KAG++V +G +A + L++ D ++P +DG
Sbjct: 31 NRRILLVEDEQTIADVVRDYLLKAGFQVDMAGDGFTALELAASRQPDLVILDRMLPGLDG 90
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + V+ +T ++KPF R+LV V +L
Sbjct: 91 VEVCRRLRQTMS-VPVIMVTALGTEDDRILGLEMGADDYVTKPFSPRELVLRVKSVLRR 148
>gi|289426029|ref|ZP_06427776.1| response regulator receiver domain protein [Propionibacterium acnes
SK187]
gi|289428042|ref|ZP_06429746.1| response regulator receiver domain protein [Propionibacterium acnes
J165]
gi|295131626|ref|YP_003582289.1| transcriptional regulatory protein, C-terminal domain protein
[Propionibacterium acnes SK137]
gi|289153572|gb|EFD02286.1| response regulator receiver domain protein [Propionibacterium acnes
SK187]
gi|289158925|gb|EFD07125.1| response regulator receiver domain protein [Propionibacterium acnes
J165]
gi|291376814|gb|ADE00669.1| transcriptional regulatory protein, C-terminal domain protein
[Propionibacterium acnes SK137]
gi|313763755|gb|EFS35119.1| response regulator receiver domain protein [Propionibacterium acnes
HL013PA1]
gi|313771771|gb|EFS37737.1| response regulator receiver domain protein [Propionibacterium acnes
HL074PA1]
gi|313793698|gb|EFS41729.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA1]
gi|313803009|gb|EFS44217.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA2]
gi|313808419|gb|EFS46886.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA2]
gi|313810594|gb|EFS48308.1| response regulator receiver domain protein [Propionibacterium acnes
HL083PA1]
gi|313816927|gb|EFS54641.1| response regulator receiver domain protein [Propionibacterium acnes
HL059PA1]
gi|313818159|gb|EFS55873.1| response regulator receiver domain protein [Propionibacterium acnes
HL046PA2]
gi|313821018|gb|EFS58732.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA1]
gi|313823910|gb|EFS61624.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA2]
gi|313827150|gb|EFS64864.1| response regulator receiver domain protein [Propionibacterium acnes
HL063PA1]
gi|313829729|gb|EFS67443.1| response regulator receiver domain protein [Propionibacterium acnes
HL063PA2]
gi|313831635|gb|EFS69349.1| response regulator receiver domain protein [Propionibacterium acnes
HL007PA1]
gi|313834789|gb|EFS72503.1| response regulator receiver domain protein [Propionibacterium acnes
HL056PA1]
gi|313839363|gb|EFS77077.1| response regulator receiver domain protein [Propionibacterium acnes
HL086PA1]
gi|314916486|gb|EFS80317.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA4]
gi|314918851|gb|EFS82682.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA1]
gi|314921060|gb|EFS84891.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA3]
gi|314927043|gb|EFS90874.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA3]
gi|314932305|gb|EFS96136.1| response regulator receiver domain protein [Propionibacterium acnes
HL067PA1]
gi|314956579|gb|EFT00831.1| response regulator receiver domain protein [Propionibacterium acnes
HL027PA1]
gi|314959461|gb|EFT03563.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA1]
gi|314961863|gb|EFT05964.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA2]
gi|314964853|gb|EFT08953.1| response regulator receiver domain protein [Propionibacterium acnes
HL082PA1]
gi|314968642|gb|EFT12740.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA1]
gi|314974985|gb|EFT19080.1| response regulator receiver domain protein [Propionibacterium acnes
HL053PA1]
gi|314977919|gb|EFT22013.1| response regulator receiver domain protein [Propionibacterium acnes
HL045PA1]
gi|314979592|gb|EFT23686.1| response regulator receiver domain protein [Propionibacterium acnes
HL072PA2]
gi|314984673|gb|EFT28765.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA1]
gi|314988327|gb|EFT32418.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA2]
gi|314990417|gb|EFT34508.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA3]
gi|315079185|gb|EFT51188.1| response regulator receiver domain protein [Propionibacterium acnes
HL053PA2]
gi|315082350|gb|EFT54326.1| response regulator receiver domain protein [Propionibacterium acnes
HL078PA1]
gi|315083677|gb|EFT55653.1| response regulator receiver domain protein [Propionibacterium acnes
HL027PA2]
gi|315087318|gb|EFT59294.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA3]
gi|315089735|gb|EFT61711.1| response regulator receiver domain protein [Propionibacterium acnes
HL072PA1]
gi|315095610|gb|EFT67586.1| response regulator receiver domain protein [Propionibacterium acnes
HL038PA1]
gi|315100230|gb|EFT72206.1| response regulator receiver domain protein [Propionibacterium acnes
HL059PA2]
gi|315102554|gb|EFT74530.1| response regulator receiver domain protein [Propionibacterium acnes
HL046PA1]
gi|315109528|gb|EFT81504.1| response regulator receiver domain protein [Propionibacterium acnes
HL030PA2]
gi|327326602|gb|EGE68390.1| DNA-binding response regulator PrrA [Propionibacterium acnes
HL096PA3]
gi|327332866|gb|EGE74598.1| DNA-binding response regulator PrrA [Propionibacterium acnes
HL096PA2]
gi|327335264|gb|EGE76974.1| DNA-binding response regulator PrrA [Propionibacterium acnes
HL097PA1]
gi|327447693|gb|EGE94347.1| response regulator receiver domain protein [Propionibacterium acnes
HL043PA2]
gi|327448568|gb|EGE95222.1| response regulator receiver domain protein [Propionibacterium acnes
HL043PA1]
gi|327449579|gb|EGE96233.1| response regulator receiver domain protein [Propionibacterium acnes
HL013PA2]
gi|327455879|gb|EGF02534.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA3]
gi|327456029|gb|EGF02684.1| response regulator receiver domain protein [Propionibacterium acnes
HL092PA1]
gi|327458031|gb|EGF04686.1| response regulator receiver domain protein [Propionibacterium acnes
HL083PA2]
gi|328757193|gb|EGF70809.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA1]
gi|328757384|gb|EGF71000.1| response regulator receiver domain protein [Propionibacterium acnes
HL020PA1]
gi|328757574|gb|EGF71190.1| response regulator receiver domain protein [Propionibacterium acnes
HL025PA2]
gi|328761991|gb|EGF75497.1| DNA-binding response regulator PrrA [Propionibacterium acnes
HL099PA1]
gi|332676492|gb|AEE73308.1| response regulator MprA [Propionibacterium acnes 266]
Length = 232
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D
Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 GLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRA-LTR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|89072496|ref|ZP_01159068.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium sp. SKA34]
gi|89051600|gb|EAR57053.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium sp. SKA34]
Length = 1132
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L AGY V + +G A D V+++ L+L DI+MPEM G E+
Sbjct: 721 ILVVDDEPVNLQILNNFLRLAGYRVKTAESGHQAIDIVQQQRPDLILLDIMMPEMSGYEV 780
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +L +M ++ + L+KPF+ +L+ + L
Sbjct: 781 CTLLRKQYSIFELPIMMLSALGQIQDRIKGFECGANDYLTKPFNKEELIARIQAYL 836
>gi|239637987|ref|ZP_04678948.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
gi|239596550|gb|EEQ79086.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
Length = 236
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A KV L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVELSQPDLIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|323702131|ref|ZP_08113798.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323532818|gb|EGB22690.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 231
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L + G+EV+ +G + D R E L++ DI++P MDG+
Sbjct: 3 KILVVDDEQPIRELVKYNLEREGFEVLLAGDGNTGLDMARTEAPDLIILDIMLPGMDGLS 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + ++ ++ ++KPF R+L+ V L +
Sbjct: 63 VCRTLHQEPATRAIPIIMLSARGEEVDKVLGLELGADDYITKPFSPRELIARVKARLRRQ 122
>gi|271967658|ref|YP_003341854.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270510833|gb|ACZ89111.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 237
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L +L GY V ++G +A + + EP+ L+L D++MP +DG+
Sbjct: 8 RVLVVDDEPALREALQSSLEYEGYRVGLASDGLAALEILEREPYELVLLDVMMPRLDGLT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ +T AV L KPF L +L+ V LL
Sbjct: 68 ACRRLRAAGNHVPVLMLTARDAVGDRVSGLDAGADDYLVKPFELDELLARVRALLRR 124
>gi|242281151|ref|YP_002993280.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
gi|242124045|gb|ACS81741.1| two component transcriptional regulator, winged helix family
[Desulfovibrio salexigens DSM 2638]
Length = 230
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ ED +D L L +GYEVV+ +G A D+ R+E L+L D+++P +
Sbjct: 1 MSVEKILVVEDHNDTIELLKYNLTSSGYEVVTAMDGHKALDQARKENPDLILLDLMLPGI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ RR + + V+ +T + KPF R+LV V +
Sbjct: 61 DGLEVCRRLKQEVATQHIPVIMLTAKGEEVDRVVGLELGVDDYIVKPFSPRELVLRVKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|297200653|ref|ZP_06918050.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197709788|gb|EDY53822.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 245
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY+ +GA A DK L++ DI MP MDG+
Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALDKATAYRPDLVVLDIQMPRMDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L V LL +
Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 130
>gi|229543409|ref|ZP_04432469.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229327829|gb|EEN93504.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 224
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL +D++ M L L AGY G A ++EE + L+L DI+MPE DG
Sbjct: 2 KKLLLVDDEERMLDLLALYLEPAGYACDKVTRGPEAIRYIQEETYDLILLDIMMPETDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R+ ++ + V+ +T +SKPF ++L+ ++ +L N
Sbjct: 62 EVCRQIRKM-SQVPVIMLTARTDKPDVVKGLKIGADDYISKPFDEKELLARIDAVLRRSN 120
>gi|116873949|ref|YP_850730.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742827|emb|CAK21951.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 225
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD + + + L G+ V++ ++G A V E L + D++MP MDG
Sbjct: 2 KRILVVDDDRHILKLVGHYLRAEGFHVLAASDGVEAEKIVENEQIHLAVIDVMMPNMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
EL ++ PD+ V+ +T A+A ++KPF +LV + LL N
Sbjct: 62 ELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 121
>gi|325289049|ref|YP_004265230.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324964450|gb|ADY55229.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 227
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KI++ +DD ++R ++ L ++G+ +G A K+ + L++ D++MP MD
Sbjct: 3 MS-KIMIVDDDPNIRELVLALLHRSGFAACEAADGREALQKMLNDNPDLVIIDVMMPNMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L V+ +T +A L+KPF +L+ V LL
Sbjct: 62 GFELCRHLRRYYENLPVIMLTAKGELASKVKGFGLGADDYLTKPFEGDELIARVQALLRR 121
>gi|302559898|ref|ZP_07312240.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
gi|302477516|gb|EFL40609.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
Length = 244
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +GA A +K L++ DI MP MDG+
Sbjct: 11 QRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLVVLDIQMPRMDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 71 TAARRIRATGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 130
>gi|47565258|ref|ZP_00236300.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
gi|208742147|ref|YP_002267599.1| two component transcriptional regulator [Bacillus cereus]
gi|47557612|gb|EAL15938.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
Length = 237
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++++R + L + YEV + NG ++ L++ D++MP+ +
Sbjct: 1 MKKRILIIEDEENIREVCKQYLEREEYEVYTAVNGKEGWELFLTHQPDLIILDLMMPQKN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ +T L+KPF +LV + +
Sbjct: 61 GWELCEEIRQK-SNVPIIMLTAKGEERNRILGLTIGADDYLTKPFSPHELVLRIQIIFRR 119
>gi|317121455|ref|YP_004101458.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
gi|315591435|gb|ADU50731.1| two component transcriptional regulator, winged helix family
[Thermaerobacter marianensis DSM 12885]
Length = 326
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D+ + + L ++L +AG+EV +G A ++ L++ D+++PE+D
Sbjct: 1 MGERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + + ++ +T + KPF+ R+L+ + +L
Sbjct: 61 GLTVCREVRK-TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRR 119
>gi|149198529|ref|ZP_01875573.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
gi|149138244|gb|EDM26653.1| DNA-binding response regulator [Lentisphaera araneosa HTCC2155]
Length = 226
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AEDD +R L+ GY++ NG A D E + DI+MPE++G +
Sbjct: 2 KVLIAEDDILIREGLVDIFEDEGYQIAEAANGREALDLYHNEKPDFICLDIMMPEINGYD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++D D+ V+F++ + ++KPF +++++ V +
Sbjct: 62 VCREIRKVDSDIPVIFLSAKSQEEDKLQGFELGADDYITKPFGIKEVIARVRAVTRR 118
>gi|304406985|ref|ZP_07388639.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304343972|gb|EFM09812.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 238
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ +D++ +RR L L K GYE+ +G +A + + L++ D+++P +DG+
Sbjct: 6 HRILVVDDEERIRRLLKMYLEKEGYEIEEAEDGETALRMAAGKDYDLIMLDVMLPGIDGV 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R ++ V+ +T + KPF R+++ V +L +
Sbjct: 66 EVCSRLRQV-KATPVIMLTAKGEEMNRVQGFEAGADDYVVKPFSPREVIYRVKAILRRSS 124
>gi|259047884|ref|ZP_05738285.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
gi|259035561|gb|EEW36816.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
Length = 238
Score = 161 bits (409), Expect = 3e-38, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + +L K G+EV++ +G E+ L++ D+++P++DG+
Sbjct: 2 KKILVVDDEKPISDIVKFSLSKEGFEVITAFDGEEGLAAFHEKNPDLVILDLMLPKIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R + + ++ +T + ++KPF R+L+ V L +
Sbjct: 62 EVCREIRK-TSHVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQ 119
>gi|229163581|ref|ZP_04291530.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus R309803]
gi|228619831|gb|EEK76708.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus R309803]
Length = 239
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|327439249|dbj|BAK15614.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 236
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+ + L L +AG++V+ ++G + D E+ L+L D+++P++D
Sbjct: 1 MVKTVLVVEDEMPIATLLKYNLEQAGFDVLLAHDGQAGLDTAVEQSPDLILLDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + L ++ ++ +T ++KPF R+++ V +L
Sbjct: 61 GVEVCKELRRLRINIPIIMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAVLRR 120
>gi|182437750|ref|YP_001825469.1| putative two-component systen response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466266|dbj|BAG20786.1| putative two-component systen response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 245
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 49/120 (40%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+
Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYDPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128
>gi|23099620|ref|NP_693086.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
gi|22777850|dbj|BAC14121.1| two-component response regulator involved in phosphate regulation
[Oceanobacillus iheyensis HTE831]
Length = 231
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ + L + +G+E NG A +K + L++ D+++PE+D
Sbjct: 1 MSKRILIVDDEKSIVTLLKYNMENSGFETDVAYNGQEAINKAEASMYDLIVLDLMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ +T L+KPF ++++ V +L
Sbjct: 61 GMEVCRTLRMNQVNTPILMLTAKDEEFDKVLGLEMGADDYLTKPFSPKEVIARVKAILRR 120
>gi|313905040|ref|ZP_07838410.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313470110|gb|EFR65442.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 229
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + + + +L + GYEV +G A + +E + ++L D+++P+M+
Sbjct: 1 MANRVLVVDDEKLIVKGIRFSLEQDGYEVSCAYDGEEALNMAKENTYDIILLDLMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ E + ++ +T ++KPF++ ++ + +L
Sbjct: 61 GLDVCQQIRE-FSSVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRR 119
>gi|313887650|ref|ZP_07821332.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846259|gb|EFR33638.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 233
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + K GY V + NG A +E + L+L DI+MP+++
Sbjct: 1 MEEKILVVDDESAISDIIKFNFEKEGYLVETACNGKEAIALAKENNYDLILLDIMMPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R + D+ V+ +T + KPF +R+L+ V +L
Sbjct: 61 GFEALREIRK-TSDVPVIMLTAREEEVDKVLGLELGADDYVVKPFSMRELLARVKAVLRR 119
>gi|74316234|ref|YP_313974.1| two component transcriptional regulator [Thiobacillus denitrificans
ATCC 25259]
gi|74055729|gb|AAZ96169.1| Two component Transcriptional regulator, Winged helix family
[Thiobacillus denitrificans ATCC 25259]
Length = 230
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ L L +AG++V + + A ++ ++L D ++P M
Sbjct: 1 MAANILLVEDEPGIQELLKFNLTQAGHQVTAAGDAEHALKFLKTTLPDVILLDWMLPGMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L RR + ++ +T ++KPF R+LV+ + +L
Sbjct: 61 GIDLCRRLRGDARYQPVPIIMLTARGEERDKVLGLDTGADDYITKPFSPRELVSRIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|302390526|ref|YP_003826347.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
gi|302201154|gb|ADL08724.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
Length = 229
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +IL+ +D+D + + L K G+ V ++G A + + F L++ DI+MPE+
Sbjct: 1 MSGYRILVVDDEDKLLDLIKNFLEKEGFAVTCADSGVEALKLLEKRKFDLVVLDIMMPEV 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ RR E + V+F+T A ++KPF LR+L + +L
Sbjct: 61 SGFDVLRRIREK-IQIPVIFLTARAEEPDKLLGLELGGDDYITKPFSLRELAARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|15614507|ref|NP_242810.1| two-component response regulator [Bacillus halodurans C-125]
gi|10174562|dbj|BAB05663.1| two-component response regulator [Bacillus halodurans C-125]
Length = 229
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN++ IL+ +D+ D+R + L K G+ V + G A ++ +EP L++ D++M E
Sbjct: 1 MNKRHNILIVDDELDLRELVTSYLRKEGFAVYTAETGDEAIKRLEQEPMDLVVLDVMMDE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + + ++ +T + KPF R+LV + L
Sbjct: 61 MDGFTACKEIRA-FSQIPIIMLTARGGEDDKVMGLQIGADDYIVKPFSPRELVARIEVAL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|308069543|ref|YP_003871148.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
gi|305858822|gb|ADM70610.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
Length = 238
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D++ +RR L L K GY + +G A K +S++L D+++P
Sbjct: 1 MSEQSNRILIVDDEERIRRLLRMYLEKEGYVIDEAEDGEIALQKATASDYSIILLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDGIE+ R + V+ +T + KPF R+++ V +
Sbjct: 61 GMDGIEVCTRLRQ-TKATPVIMLTAKGEEVNRVQGFEVGADDYVVKPFSPREVIYRVKAI 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRSS 124
>gi|226357509|ref|YP_002787249.1| response regulator, CheY [Deinococcus deserti VCD115]
gi|226319500|gb|ACO47495.1| putative response regulator, CheY [Deinococcus deserti VCD115]
Length = 227
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +R + + L + GY V +NG +VR L+L D++MP MDG+
Sbjct: 2 KTILIVEDNPGVRDMVREYLQEHGYRVRVASNGHEGLLEVRHHRPDLVLLDMMMPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E RR + V+F+T A ++KPF + +L+ V L N
Sbjct: 62 EFLRRFRAAE-HAPVVFLTARDAELDKVLGLELGADDYVTKPFSMAELLARVRAHLRRGN 120
>gi|89896385|ref|YP_519872.1| hypothetical protein DSY3639 [Desulfitobacterium hafniense Y51]
gi|89335833|dbj|BAE85428.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 225
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KI++ +DD +R + L + G++ +G A +K+ E SL + D++MP MD
Sbjct: 1 MS-KIMIVDDDPTIRELVCTLLKEGGFDTCEARDGREALEKISEANPSLAVIDLMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + DL V+ +T L+KPF +L+ V LL
Sbjct: 60 GYELCRQLRQYYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALLRR 119
>gi|149181689|ref|ZP_01860182.1| ResD [Bacillus sp. SG-1]
gi|148850667|gb|EDL64824.1| ResD [Bacillus sp. SG-1]
Length = 238
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q K+L+ +D+D +R+ L L + Y + +G SA + + +L D++MP
Sbjct: 1 MDQDVKVLIVDDEDRIRKLLRMYLERENYVIEEAEDGESALELALNNEYDCILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ + + V+ +T A + KPF R++V V LL
Sbjct: 61 MDGIEVCKELRQKKS-TPVIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|86739691|ref|YP_480091.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86566553|gb|ABD10362.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 321
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + + L AG++V +G +A P L++ D+++P +DGIE
Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR P + V+ +T A + ++KPF R+L V +L N
Sbjct: 117 VFRRLRAHRP-VPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN 174
>gi|282860432|ref|ZP_06269498.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282564168|gb|EFB69704.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 243
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ +D+ +R L ++L GY +G A KV L++ DI MP MDG+
Sbjct: 9 QRVLIVDDEPAVREALQRSLAFEGYGTEVAVDGYDALAKVEAYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 69 TAARRIRSTGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128
>gi|256390113|ref|YP_003111677.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256356339|gb|ACU69836.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 254
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 54/116 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +R L +L GY V + +G +A +V L+L D++MP MDG+
Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR DP L V+ +T L+KPF L +L+ V LL
Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFELDELLARVRALLRR 131
>gi|229076091|ref|ZP_04209059.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-18]
gi|229099049|ref|ZP_04229983.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-29]
gi|229105217|ref|ZP_04235866.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-28]
gi|229118080|ref|ZP_04247439.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-3]
gi|228665303|gb|EEL20786.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock1-3]
gi|228678143|gb|EEL32371.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-28]
gi|228684277|gb|EEL38221.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-29]
gi|228706954|gb|EEL59159.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock4-18]
Length = 239
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MNNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEMALQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|313836289|gb|EFS74003.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA2]
gi|314928754|gb|EFS92585.1| response regulator receiver domain protein [Propionibacterium acnes
HL044PA1]
gi|314971209|gb|EFT15307.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA3]
gi|328906497|gb|EGG26272.1| response regulator receiver domain protein [Propionibacterium sp.
P08]
Length = 232
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D
Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 GLEATRMLRSNGNDVPILVLTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRA-LTR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|254385529|ref|ZP_05000855.1| two-component system response regulator [Streptomyces sp. Mg1]
gi|194344400|gb|EDX25366.1| two-component system response regulator [Streptomyces sp. Mg1]
Length = 243
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 51/118 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY + +G A DK L++ DI MP MDG+
Sbjct: 8 QRILVVDDEPAVREALRRSLAFEGYGAQTAVDGLDALDKAASYAPDLIVLDIQMPRMDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L V LL
Sbjct: 68 TAARRLRSAGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 125
>gi|315158433|gb|EFU02450.1| response regulator receiver domain protein [Enterococcus faecalis
TX0312]
Length = 234
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+
Sbjct: 2 KKILVVDDEKPILEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|127513677|ref|YP_001094874.1| two component transcriptional regulator [Shewanella loihica PV-4]
gi|126638972|gb|ABO24615.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 241
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + G+ + + SA D + E L+L D + P
Sbjct: 13 MTARILIVEDELAIREMLAFVLEQHGFTTTTAEDFDSALDMLSEPYPDLVLLDWMFPGGS 72
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA++ E + V+ +T ++KPF ++LV + ++
Sbjct: 73 GIQLAKKLRQDEFTRHIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVM 132
Query: 119 TI 120
Sbjct: 133 RR 134
>gi|328948860|ref|YP_004366197.1| transcriptional regulator [Treponema succinifaciens DSM 2489]
gi|328449184|gb|AEB14900.1| two component transcriptional regulator, winged helix family
[Treponema succinifaciens DSM 2489]
Length = 231
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ +R + + K YE + NG A + R + L++ D+++P+M G++
Sbjct: 2 KILIVDDEEPIRELIKYNVEKQKYETFTAENGQQALELCRNKNPDLVILDLMLPDMSGLD 61
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R ++ ++ +T + ++KPF + L+ + +L K
Sbjct: 62 ICRIIRNDSSIKNIPIIMVTAKTEDSDIVTGLELGADDYVTKPFSPKVLLARIQSVLRRK 121
>gi|293189436|ref|ZP_06608156.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
gi|292821526|gb|EFF80465.1| DNA-binding response regulator [Actinomyces odontolyticus F0309]
Length = 227
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L GYEVVSC +G++A + +E L+L D+++P MD
Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVSCADGSAALTQFQEHNPDLVLLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + D ++ +T + + + KPF ++LV V L
Sbjct: 61 GFDVCRAIRRV-SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|227508143|ref|ZP_03938192.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227511166|ref|ZP_03941215.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227523372|ref|ZP_03953421.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227085648|gb|EEI20960.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227089478|gb|EEI24790.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227192372|gb|EEI72439.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 238
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L K GYEV +G A +V E L++ D+++P++D
Sbjct: 1 MAKKILVVDDEKPIVDIEKFNLTKEGYEVFVAYDGEEALKQVNEVDPDLIILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAREVRK-TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|167630147|ref|YP_001680646.1| transcriptional regulatory protein [Heliobacterium modesticaldum
Ice1]
gi|167592887|gb|ABZ84635.1| transcriptional regulatory protein [Heliobacterium modesticaldum
Ice1]
Length = 232
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + L K G+ V +G +A ++EE L++ D+++P +DG+E
Sbjct: 3 KILVVEDDQHILELVRFNLEKEGHTVQVAVDGEAALACLQEELPDLIILDLMLPRLDGLE 62
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + L ++ +T ++KPF R+LV + LL
Sbjct: 63 LCRRVRSRNHSAHLPILMLTAKGEEVDKVIGLEMGADDYMTKPFSPRELVARIKALLRR 121
>gi|50843550|ref|YP_056777.1| putative two-component response regulator [Propionibacterium acnes
KPA171202]
gi|50841152|gb|AAT83819.1| putative two-component response regulator [Propionibacterium acnes
KPA171202]
gi|315107744|gb|EFT79720.1| response regulator receiver domain protein [Propionibacterium acnes
HL030PA1]
Length = 232
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D
Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRA-LTR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|261408871|ref|YP_003245112.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|329928807|ref|ZP_08282646.1| response regulator MprA [Paenibacillus sp. HGF5]
gi|261285334|gb|ACX67305.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
gi|328937450|gb|EGG33871.1| response regulator MprA [Paenibacillus sp. HGF5]
Length = 228
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D
Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR E + V+ +T V L KPF L +L+ V LL
Sbjct: 61 GFEALRRLREGGSTIPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|310640985|ref|YP_003945743.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309245935|gb|ADO55502.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 229
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD+ + L + L GYEV++ NGA +K+ L++ D++MP++D
Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTATNGAEGLNKMLTAEPDLVVLDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + V+ +T V L KPF L +L+ V LL
Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|163751022|ref|ZP_02158253.1| phosphate regulon response regulator PhoB [Shewanella benthica
KT99]
gi|161329183|gb|EDQ00182.1| phosphate regulon response regulator PhoB [Shewanella benthica
KT99]
Length = 229
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ +R L L + G+ S + SA + + E L+L D + P
Sbjct: 1 MTAKILIVEDELAIREMLKFVLEQHGFTTTSAEDFDSALNMISEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLRQDEFTRRIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSS 124
>gi|153940678|ref|YP_001390399.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152936574|gb|ABS42072.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295318486|gb|ADF98863.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 233
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|260892914|ref|YP_003239011.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
gi|260865055|gb|ACX52161.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
Length = 237
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R L K L G+ V +G +A ++R + L++ DI++P++DG E
Sbjct: 9 RILIVDDEHRIREVLRKYLVAEGFGVGEAADGEAALAEIRSGHWDLVILDIMLPKIDGWE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ D+ ++ +T + KPF R++V V +L
Sbjct: 69 VCREIRKI-SDVPILMLTARGDEIDRVLGLELGADDYIVKPFSPREVVARVKAVLRR 124
>gi|116627886|ref|YP_820505.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
gi|116101163|gb|ABJ66309.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Streptococcus thermophilus LMD-9]
gi|312278467|gb|ADQ63124.1| Alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus thermophilus ND03]
Length = 235
Score = 160 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|206900113|ref|YP_002250961.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
gi|206739216|gb|ACI18274.1| response regulator DrrA [Dictyoglomus thermophilum H-6-12]
Length = 232
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L L K GYEV +G A +K + L+L DI++PE DG
Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ ++ ++ +T ++KPF ++L+ + +L
Sbjct: 62 EVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118
>gi|225174252|ref|ZP_03728251.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225170037|gb|EEG78832.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + R + L K G+ V ++G A + V + FSL++ D+++P M G +
Sbjct: 3 RILVVEDEEKISRVIRAYLEKEGFAVEEASDGLQALELVSDFNFSLIILDLMLPHMSGED 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T A + KPF +LV V+ +L
Sbjct: 63 VCKQLRRQGNNIPIIMLTAKGAEEERIRGLGLGADDYIVKPFSPGELVARVHAVLRR 119
>gi|289550550|ref|YP_003471454.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus lugdunensis HKU09-01]
gi|289180082|gb|ADC87327.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus lugdunensis HKU09-01]
Length = 236
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ + L L AGY V +G A +KV + L++ D+++P+ D
Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|315648980|ref|ZP_07902074.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315275661|gb|EFU39015.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 228
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + L + L GY+V++ +NGA + E +++ D++MP++D
Sbjct: 1 MRSRILIVDDDEKIISMLRRGLAFEGYDVLTASNGAEGLKVILSEDPDVVVLDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR E V+ +T V L KPF L +L+ V LL
Sbjct: 61 GFEALRRLREGGSTTPVLMLTAKDEVENRVKGLDTGADDYLVKPFALEELLARVRALLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|138896293|ref|YP_001126746.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196249915|ref|ZP_03148610.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134267806|gb|ABO68001.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196210429|gb|EDY05193.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 234
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L KAG++VV+ +G A +KV E +L++ D+++P++D
Sbjct: 1 MGKKILVVDDEQPIVTLLSYNLEKAGFQVVAAYDGEEALEKVAFEQPALIILDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++ +T ++KPF R++V V +L
Sbjct: 61 GVEVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|31792171|ref|NP_854664.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis AF2122/97]
gi|121636908|ref|YP_977131.1| two component response transcriptional regulatory protein MprA
[Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|215426257|ref|ZP_03424176.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis T92]
gi|215429841|ref|ZP_03427760.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis EAS054]
gi|219556849|ref|ZP_03535925.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis T17]
gi|224989380|ref|YP_002644067.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
Tokyo 172]
gi|260185890|ref|ZP_05763364.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
CPHL_A]
gi|260200008|ref|ZP_05767499.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
T46]
gi|260204195|ref|ZP_05771686.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
K85]
gi|260204198|ref|ZP_05771689.1| mycobacterial persistence regulator [Mycobacterium tuberculosis
K85]
gi|289442401|ref|ZP_06432145.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T46]
gi|289446562|ref|ZP_06436306.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis CPHL_A]
gi|289568958|ref|ZP_06449185.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T17]
gi|289573617|ref|ZP_06453844.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis K85]
gi|289573619|ref|ZP_06453846.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis K85]
gi|289749508|ref|ZP_06508886.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T92]
gi|289753038|ref|ZP_06512416.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis EAS054]
gi|81712139|sp|Q7U0X4|MPRA_MYCBO RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012448|sp|A1KHB7|MPRA_MYCBP RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|29468250|gb|AAO85468.1| MprA [Mycobacterium bovis BCG]
gi|31617759|emb|CAD93868.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium bovis
AF2122/97]
gi|121492555|emb|CAL71023.1| Mycobacterial persistence regulator mrpA [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|224772493|dbj|BAH25299.1| mycobacterial persistence regulator [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289415320|gb|EFD12560.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T46]
gi|289419520|gb|EFD16721.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis CPHL_A]
gi|289538048|gb|EFD42626.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis K85]
gi|289538050|gb|EFD42628.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis K85]
gi|289542712|gb|EFD46360.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T17]
gi|289690095|gb|EFD57524.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis T92]
gi|289693625|gb|EFD61054.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis EAS054]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|81427690|ref|YP_394688.1| two-component system, response regulator [Lactobacillus sakei
subsp. sakei 23K]
gi|4104602|gb|AAD10263.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
gi|78609330|emb|CAI54376.1| Two-component system, response regulator [Lactobacillus sakei
subsp. sakei 23K]
Length = 237
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY+V + +G A +V E L+L D+++P++D
Sbjct: 1 MAKKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVEEVVPDLILLDLMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR+ + D+ ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVARQVRKSH-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|217967623|ref|YP_002353129.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
gi|217336722|gb|ACK42515.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
Length = 232
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L L K GYEV +G A +K + L+L DI++PE DG
Sbjct: 2 KKILLVEDDKGIVNSLTLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ ++ ++ +T ++KPF ++L+ + +L
Sbjct: 62 EVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRR 118
>gi|147679020|ref|YP_001213235.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146275117|dbj|BAF60866.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 228
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D++ ++ + L K G+ V +G A K+ L++ DI++P+MDG
Sbjct: 3 SNTILVVDDEELVQDLIRLYLEKEGFRVEVARDGEEALAKLGFANPDLVILDIMLPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T + KPF +LV + +L
Sbjct: 63 WAVCREIRKTMA-TPIIMLTAKGEEFDRVLGLELGADDYVCKPFSPIELVARIKAVLRR 120
>gi|315641357|ref|ZP_07896433.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
gi|315482930|gb|EFU73450.1| DNA-binding response regulator [Enterococcus italicus DSM 15952]
Length = 234
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KVRE L+L D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLSKEGYEVFTAYDGEEALEKVREVEPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTF-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|228993316|ref|ZP_04153232.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus pseudomycoides DSM 12442]
gi|228999369|ref|ZP_04158948.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock3-17]
gi|229006924|ref|ZP_04164554.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock1-4]
gi|228754324|gb|EEM03739.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock1-4]
gi|228760314|gb|EEM09281.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus mycoides Rock3-17]
gi|228766384|gb|EEM15027.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus pseudomycoides DSM 12442]
Length = 238
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALHKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRIMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|83588943|ref|YP_428952.1| two component transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83571857|gb|ABC18409.1| two component transcriptional regulator, winged helix family
[Moorella thermoacetica ATCC 39073]
Length = 229
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L +AG+ ++ ++GA A K E L++ D+++P++DG E
Sbjct: 6 KILVVDDEPAIVELVKFNLEQAGFTTITASDGAEALQKAEAEKPDLIILDVMLPKVDGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T L+KPF R+LV V +L
Sbjct: 66 VCRSLRARGS-MPILMLTARREEVDRVLGLELGADDYLTKPFSPRELVARVRAILRR 121
>gi|329936252|ref|ZP_08286045.1| two-component systen response regulator [Streptomyces
griseoaurantiacus M045]
gi|329304362|gb|EGG48242.1| two-component systen response regulator [Streptomyces
griseoaurantiacus M045]
Length = 244
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 52/121 (42%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +D+ +R L ++L GY +GA A +K LL+ DI MP MDG
Sbjct: 10 TQRILIVDDEPAVREALQRSLAFEGYGTEVAVDGADALEKAAAYRPDLLVLDIQMPRMDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ARR ++ +T V L KPF L +L + LL
Sbjct: 70 LTAARRIRAAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRS 129
Query: 122 N 122
+
Sbjct: 130 S 130
>gi|258512880|ref|YP_003186314.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479606|gb|ACV59925.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L AL + GY V +GA A ++ R L+L D+++PE+D
Sbjct: 1 MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALERWRALQPDLILLDVMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+ +T ++KPF R+LV V L
Sbjct: 61 GFDVLRAIRQA-SGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRR 119
>gi|187778177|ref|ZP_02994650.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
15579]
gi|187775105|gb|EDU38907.1| hypothetical protein CLOSPO_01769 [Clostridium sporogenes ATCC
15579]
Length = 239
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+
Sbjct: 7 MKKLFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 66
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 67 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 125
Query: 119 TI 120
Sbjct: 126 RR 127
>gi|153854191|ref|ZP_01995499.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
gi|149753240|gb|EDM63171.1| hypothetical protein DORLON_01490 [Dorea longicatena DSM 13814]
Length = 229
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +D+ + + + +L + GY+V +G A +E + ++L D+++P+ D
Sbjct: 1 MSRRVLVVDDEKLIVKGIRFSLEQDGYDVDCAYDGEEALKLAKENAYDIILLDVMLPKYD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQQIRE-YSDVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARIKAIMRR 119
>gi|222099706|ref|YP_002534274.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
gi|221572096|gb|ACM22908.1| Response regulator DrrA [Thermotoga neapolitana DSM 4359]
Length = 251
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L K GY+V+ +G A EE + + DI++P MDG
Sbjct: 15 KKKILVVDDDPAILELVGYNLAKEGYDVLKAYDGEEALKLANEEDVDMFIVDIMLPGMDG 74
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+L+ V +
Sbjct: 75 FELVRKIRSMEKYRNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 134
Query: 120 I 120
Sbjct: 135 R 135
>gi|326778385|ref|ZP_08237650.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|326658718|gb|EGE43564.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 245
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 49/120 (40%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+
Sbjct: 9 QRILIVDDEPAVREALQRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128
>gi|313813774|gb|EFS51488.1| response regulator receiver domain protein [Propionibacterium acnes
HL025PA1]
Length = 232
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D
Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSAADGVEALAHLSGTHPDAVIMDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRA-LTR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|254831885|ref|ZP_05236540.1| hypothetical protein Lmon1_11050 [Listeria monocytogenes 10403S]
Length = 237
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKTIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|227810120|ref|ZP_03989033.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
gi|226904700|gb|EEH90618.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
Length = 232
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+A+D+ +R L K G++V+ +GA A +++ ++L DI+MP +DG
Sbjct: 5 QTVLIADDEAQIREILSLYFKKEGFKVIEAADGAEALVQIQAGKPDIILLDIMMPVLDGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ ++ ++ D+ ++ +T ++KPF+ R++V V +L +
Sbjct: 65 EVCKQVRKI-SDVPIIMLTAKDFDDDRILGLEMGADDYIAKPFNTREVVARVKAVLRRSS 123
>gi|152967563|ref|YP_001363347.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
gi|151362080|gb|ABS05083.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
Length = 239
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L +L AG+EV S +GA A + L++ D+++P++DG
Sbjct: 11 RLLVVDDEPSIRELLATSLRFAGFEVASAGDGAEALKLAEDFRPDLVVLDVMLPDVDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + V+F+T A ++KPF L ++V + +L
Sbjct: 71 VTRKLRERGRAVPVLFLTARDDTADKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127
>gi|55821169|ref|YP_139611.1| response regulator [Streptococcus thermophilus LMG 18311]
gi|55737154|gb|AAV60796.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
[Streptococcus thermophilus LMG 18311]
Length = 235
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|163741992|ref|ZP_02149381.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
gi|161384713|gb|EDQ09093.1| two-component response regulator [Phaeobacter gallaeciensis 2.10]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD D+ A+ KAGYE + ++G +A R++ L++ DI +PEMD
Sbjct: 1 MPARILIVDDDPDILDVTGFAVEKAGYETLFASDGLNALKASRQQLPDLIVLDIGLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++F+T L+KPF R+LV + +L
Sbjct: 61 GLEVCREIRK-SSDVPILFLTARDDEIDRIVGLEIGADDYLTKPFSPRELVARIKAILKR 119
>gi|213966092|ref|ZP_03394280.1| two-component system response regulator TcsR5 [Corynebacterium
amycolatum SK46]
gi|213951290|gb|EEB62684.1| two-component system response regulator TcsR5 [Corynebacterium
amycolatum SK46]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L ++L GY V +GA A +K+ ++ L + D++MP++DG++
Sbjct: 2 KILVVDDDQAVREALRRSLTFNGYTVELAEDGAEALEKIAKDRPDLAILDVMMPKLDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR DL VM +T +V+ L KPF L +L+ V LL
Sbjct: 62 VCRRLRSEGDDLPVMMLTARDSVSERVAGLDAGADDYLPKPFALEELLARVRSLLRR 118
>gi|24987831|pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 2 MNKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 62 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121
>gi|21283366|ref|NP_646454.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MW2]
gi|49486519|ref|YP_043740.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MSSA476]
gi|297207594|ref|ZP_06924029.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300911675|ref|ZP_07129119.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|21204806|dbj|BAB95502.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MW2]
gi|49244962|emb|CAG43423.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MSSA476]
gi|296887611|gb|EFH26509.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|300887096|gb|EFK82297.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
Length = 234
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGYEVV +G A +KV E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|300790130|ref|YP_003770421.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299799644|gb|ADJ50019.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 233
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD+ +R + + L AG+ V NGA K L++ D++MP ++G+E
Sbjct: 7 RVLVVDDDETVRDVVRRYLEVAGFTVDVAGNGAEGLAKFGAHEPDLVVLDVMMPGINGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ + ++ +T ++KPF ++L V +L
Sbjct: 67 VCKRLRQV-SQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELALRVASVLRR 122
>gi|255531250|ref|YP_003091622.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255344234|gb|ACU03560.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 227
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI LAEDD + + L + GYE+ S +G A + F L++ DI+MP ++GIE
Sbjct: 3 KIALAEDDPKIADLIKSGLEEQGYEITSIADGQQALESFGINHFDLVILDIMMPGLNGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ +L ++ +T + V L+KPFH ++L+ + LL
Sbjct: 63 LCRQLRSSHKNLPILMLTALSTVDDKVMGLKAGADDYLAKPFHFKELLARIEALLRR 119
>gi|254432325|ref|ZP_05046028.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
gi|197626778|gb|EDY39337.1| DNA-binding response regulator [Cyanobium sp. PCC 7001]
Length = 253
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ ++G A + RE L++ D++MP++DG
Sbjct: 13 KETILVVDDEASIRRILETRLSMIGYQVVTASDGMEALECFRESHPDLVVLDVMMPKLDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 73 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130
>gi|253575382|ref|ZP_04852720.1| multi-component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251845379|gb|EES73389.1| multi-component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 248
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +MR L L + G+EV NG A + F ++L D+++P+MDG ++
Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E D + ++ +T + L+KPF +L+ V L+
Sbjct: 76 CKKIREKD-HVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRR 130
>gi|225378285|ref|ZP_03755506.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
16841]
gi|225209852|gb|EEG92206.1| hypothetical protein ROSEINA2194_03946 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A E + ++L DI++P+MD
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENHYDMILLDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQHIRE-FSDMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|75761471|ref|ZP_00741436.1| Two-component response regulator yycF [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74491032|gb|EAO54283.1| Two-component response regulator yycF [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 173
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L K G+E+V ++G A +K EE ++L DI++P D
Sbjct: 2 MGKKILVVDDEKPIADILKFNLEKEGFEIVMAHDGDEAIEKANEEQPDMVLLDIMLPGKD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 62 GLEVCREIRK-SSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRR 120
>gi|312135255|ref|YP_004002593.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
gi|311775306|gb|ADQ04793.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
Length = 223
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG +
Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVVAHNGMDGISVFKNEMPDLVILDIMLPKKDGYD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|298249642|ref|ZP_06973446.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297547646|gb|EFH81513.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 238
Score = 160 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILLAED++ +R F+ + L G+EV+ +NG A ++E LL+ D++MP MDG+
Sbjct: 6 KRILLAEDEEALRDFVSRNLRARGFEVLEASNGLEAMALWQQEAPHLLILDVMMPRMDGL 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ +R + + ++ +T + + L+KPF + +L+ V L N
Sbjct: 66 EVCQRVRQ-SSTVPIIILTALDSERDKVATLDLGADDYLTKPFGVEELLARVRAALRRTN 124
>gi|302540147|ref|ZP_07292489.1| DNA-binding response regulator TcrA [Streptomyces hygroscopicus
ATCC 53653]
gi|302457765|gb|EFL20858.1| DNA-binding response regulator TcrA [Streptomyces himastatinicus
ATCC 53653]
Length = 234
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD +R L +AL GY V S ++G A + E +++ D++MP +D
Sbjct: 1 MTNTVLLAEDDRAIRHALERALTLEGYRVTSVSDGVEALAAIHREHPDVIVLDVMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R ++ +T A + ++KPF + ++ + LL
Sbjct: 61 GIQVCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVAKPFDVEEVFARLRALLRR 120
>gi|56421267|ref|YP_148585.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|261418254|ref|YP_003251936.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|297529108|ref|YP_003670383.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|319767786|ref|YP_004133287.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|56381109|dbj|BAD77017.1| two-component response regulator (phosphate regulation)
[Geobacillus kaustophilus HTA426]
gi|261374711|gb|ACX77454.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|297252360|gb|ADI25806.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|317112652|gb|ADU95144.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 235
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L L KAG+ VV+ ++G A KV E +L++ D+++P++D
Sbjct: 1 MGRKILVVDDEQPIVTLLSYNLEKAGFHVVTAHDGEEALVKVASEQPALIILDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + ++ +T ++KPF R+++ V +L
Sbjct: 61 GVDVCKRLRQQQIMTPILMLTARDDEFDKVLGLELGADDYMTKPFSPREVIARVKAILRR 120
>gi|251798749|ref|YP_003013480.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247546375|gb|ACT03394.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 230
Score = 160 bits (407), Expect = 6e-38, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q I++ +DD+ + L ++L GYEV + +NG + +L+ D++MP++D
Sbjct: 1 MRQHIMVVDDDEKITSLLRRSLAFEGYEVSTASNGMEGLRLLLTADPDMLILDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + ++ +T ++ L KPF L +L+ V LL
Sbjct: 61 GWEVCRRVREGGSTVPILMLTAKDDISDRVKGLDAGADDYLIKPFALEELLARVRALLRR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|330836364|ref|YP_004411005.1| two component transcriptional regulator, winged helix family
[Spirochaeta coccoides DSM 17374]
gi|329748267|gb|AEC01623.1| two component transcriptional regulator, winged helix family
[Spirochaeta coccoides DSM 17374]
Length = 224
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD +R + L K G+ V +G A K+ L + D++MP MD
Sbjct: 1 MN-KILVVDDDPHLRELVRIILQKEGFAVYEAADGLEALSKLETSKADLAIIDLMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + D+ V+ +T A L KPF +L+ V LL
Sbjct: 60 GFELCQELRASY-DIPVLMLTAKGETAQKIKGFQAGADDYLVKPFEPLELMARVKALLKR 118
>gi|77919611|ref|YP_357426.1| two component hybrid sensor response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77545694|gb|ABA89256.1| response regulator receiver sensor signal transduction histidine
kinase [Pelobacter carbinolicus DSM 2380]
Length = 391
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + + L G+EV++ ++G + V +E L+L D +MP MD
Sbjct: 1 MSSRILVVDDEAIILQLATMVLTSRGFEVLTAHSGQECLEIVEQESPDLVLLDYMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R + PD V+ +TG + + D A + KPF +DLV + +L I
Sbjct: 61 GMTTLRHLRQAHPDTYVIMLTGKGSEQIAVDVMKAGAADYILKPFKNQDLVERIENVLRI 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|241765260|ref|ZP_04763241.1| two component transcriptional regulator, winged helix family
[Acidovorax delafieldii 2AN]
gi|241365051|gb|EER59943.1| two component transcriptional regulator, winged helix family
[Acidovorax delafieldii 2AN]
Length = 243
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+EV+ +G + + E L++ D++MP DG+
Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRLLLRETVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ V+ +L +
Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127
>gi|321311784|ref|YP_004204071.1| two-component response regulator [Bacillus subtilis BSn5]
gi|320018058|gb|ADV93044.1| two-component response regulator [Bacillus subtilis BSn5]
Length = 240
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + +NG A K E + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEADNGDEAITKGLEANYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|154505270|ref|ZP_02042008.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
gi|153794468|gb|EDN76888.1| hypothetical protein RUMGNA_02784 [Ruminococcus gnavus ATCC 29149]
Length = 230
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED++ + L +G++V N+G + +K +E F L++ D+++P +D
Sbjct: 1 MSKRILIVEDEESIADLERDYLELSGFQVEVANDGETGLNKAMKEEFDLIILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ ++ ++KPF +LV V L+
Sbjct: 61 GFEICREVRSQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLSR 119
>gi|15924683|ref|NP_372217.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus Mu50]
gi|15927271|ref|NP_374804.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus N315]
gi|57650564|ref|YP_186577.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus COL]
gi|87162022|ref|YP_494334.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus USA300_FPR3757]
gi|88195500|ref|YP_500304.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus NCTC 8325]
gi|148268173|ref|YP_001247116.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150394240|ref|YP_001316915.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus JH1]
gi|151221798|ref|YP_001332620.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156980010|ref|YP_001442269.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus Mu3]
gi|161509907|ref|YP_001575566.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|221142557|ref|ZP_03567050.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus str. JKD6009]
gi|253317163|ref|ZP_04840376.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus str. CF-Marseille]
gi|253732344|ref|ZP_04866509.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253734523|ref|ZP_04868688.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|255006477|ref|ZP_05145078.2| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus Mu50-omega]
gi|257794078|ref|ZP_05643057.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A9781]
gi|258415782|ref|ZP_05682053.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A9763]
gi|258421981|ref|ZP_05684901.1| response regulator receiver [Staphylococcus aureus A9719]
gi|258438261|ref|ZP_05689545.1| response regulator receiver [Staphylococcus aureus A9299]
gi|258443719|ref|ZP_05692058.1| response regulator receiver [Staphylococcus aureus A8115]
gi|258445930|ref|ZP_05694106.1| response regulator [Staphylococcus aureus A6300]
gi|258448389|ref|ZP_05696506.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A6224]
gi|258451793|ref|ZP_05699815.1| two component transcriptional regulator [Staphylococcus aureus
A5948]
gi|258454130|ref|ZP_05702101.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A5937]
gi|262048663|ref|ZP_06021546.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus D30]
gi|262052264|ref|ZP_06024469.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus 930918-3]
gi|269203311|ref|YP_003282580.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus ED98]
gi|282893188|ref|ZP_06301422.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus A8117]
gi|282920233|ref|ZP_06327958.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A9765]
gi|282927823|ref|ZP_06335434.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus A10102]
gi|284024741|ref|ZP_06379139.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 132]
gi|294848714|ref|ZP_06789460.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A9754]
gi|295406003|ref|ZP_06815811.1| two-component system [Staphylococcus aureus A8819]
gi|296274880|ref|ZP_06857387.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MR1]
gi|297245071|ref|ZP_06928948.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A8796]
gi|304380716|ref|ZP_07363385.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|13701489|dbj|BAB42783.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus N315]
gi|14247465|dbj|BAB57855.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus Mu50]
gi|57284750|gb|AAW36844.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus COL]
gi|87127996|gb|ABD22510.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87203058|gb|ABD30868.1| two-component response regulator, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147741242|gb|ABQ49540.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus JH9]
gi|149946692|gb|ABR52628.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|150374598|dbj|BAF67858.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus str. Newman]
gi|156722145|dbj|BAF78562.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus Mu3]
gi|160368716|gb|ABX29687.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253723866|gb|EES92595.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253727464|gb|EES96193.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|257788050|gb|EEV26390.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A9781]
gi|257839375|gb|EEV63848.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A9763]
gi|257842025|gb|EEV66454.1| response regulator receiver [Staphylococcus aureus A9719]
gi|257848305|gb|EEV72296.1| response regulator receiver [Staphylococcus aureus A9299]
gi|257851125|gb|EEV75068.1| response regulator receiver [Staphylococcus aureus A8115]
gi|257855172|gb|EEV78111.1| response regulator [Staphylococcus aureus A6300]
gi|257858357|gb|EEV81242.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A6224]
gi|257860505|gb|EEV83331.1| two component transcriptional regulator [Staphylococcus aureus
A5948]
gi|257863582|gb|EEV86339.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus A5937]
gi|259159865|gb|EEW44904.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus 930918-3]
gi|259163310|gb|EEW47869.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus D30]
gi|262075601|gb|ACY11574.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus ED98]
gi|269941173|emb|CBI49560.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus TW20]
gi|282590333|gb|EFB95412.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus A10102]
gi|282594581|gb|EFB99566.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A9765]
gi|282764506|gb|EFC04632.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus A8117]
gi|285817376|gb|ADC37863.1| Alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus 04-02981]
gi|294824740|gb|EFG41163.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A9754]
gi|294969000|gb|EFG45021.1| two-component system [Staphylococcus aureus A8819]
gi|297178151|gb|EFH37399.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus A8796]
gi|302751519|gb|ADL65696.1| response regulator OmpR [Staphylococcus aureus subsp. aureus str.
JKD6008]
gi|304340715|gb|EFM06646.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312830071|emb|CBX34913.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315130673|gb|EFT86659.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
gi|315198610|gb|EFU28938.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
gi|320140428|gb|EFW32282.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320143967|gb|EFW35736.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314365|gb|AEB88778.1| Two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus T0131]
gi|329727125|gb|EGG63581.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus 21172]
gi|329728426|gb|EGG64863.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus 21189]
gi|329733213|gb|EGG69550.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus 21193]
Length = 234
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGYEVV +G A +KV E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVESEQPDLIILDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|315658044|ref|ZP_07910917.1| response regulator [Staphylococcus lugdunensis M23590]
gi|315496934|gb|EFU85256.1| response regulator [Staphylococcus lugdunensis M23590]
Length = 249
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ + L L AGY V +G A +KV + L++ D+++P+ D
Sbjct: 14 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVEKVQPDLIVLDVMLPKKD 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 74 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 133
>gi|229541515|ref|ZP_04430575.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229325935|gb|EEN91610.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 230
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + L L +AG+EV++ ++G YD R+E +++ D+++P MD
Sbjct: 1 MAKKVLVVDDEPSIVTLLKFNLEQAGFEVLTASDGNEGYDTARKEKLDVIILDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + ++ +T + ++KPF R++V V +L
Sbjct: 61 GMDVCKQLRLGKINTPILMLTAKSDELDKILGLELGADDYITKPFSPREVVARVKAILRR 120
>gi|15894977|ref|NP_348326.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15024664|gb|AAK79666.1|AE007679_12 Response regulator (CheY-like receiver domain and DNA-binding HTH
domain) [Clostridium acetobutylicum ATCC 824]
gi|325509114|gb|ADZ20750.1| Response regulator (CheY-like receiver domain and DNA-binding HTH
domain) [Clostridium acetobutylicum EA 2018]
Length = 232
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + + L GY+V++ +G A +K + E L+L D+++P MDG
Sbjct: 4 EKILVVDDEEHIVKLIKFNLENNGYKVITAADGGEALEKAKGEVPQLVLLDLMLPVMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ V+ IT ++KPF +R+LV V +L
Sbjct: 64 DVCREIRRDQSISNMPVIMITAKGEELDKILGLELGADDYITKPFSVRELVARVKAVLRR 123
>gi|320161667|ref|YP_004174892.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319995521|dbj|BAJ64292.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 226
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 57/116 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ + L + G+ V S +G +A + +++ P L++ D+++PE+DG E+
Sbjct: 6 ILLVDDEPSIVSLCRMYLEREGFRVQSAGDGVTALEMLKKSPPDLMILDVMLPELDGFEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + L ++ +T ++KPF+ R+LV V +L
Sbjct: 66 CKQLRAQNDPLPILMLTARDEDYDKILGLELGADDYMTKPFNPRELVARVKAILRR 121
>gi|62389763|ref|YP_225165.1| two component response regulator [Corynebacterium glutamicum ATCC
13032]
gi|41325098|emb|CAF19579.1| putative two component response regulator [Corynebacterium
glutamicum ATCC 13032]
Length = 255
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG
Sbjct: 23 SMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDG 82
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R D ++ +T V+ L+KPF L +L+ V L+
Sbjct: 83 LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141
>gi|195978474|ref|YP_002123718.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
gi|195975179|gb|ACG62705.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus equi subsp. zooepidemicus MGCS10565]
Length = 247
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + R L L K G+ +G +A EP+ ++ DI++P++D
Sbjct: 8 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + ++KPF R+L+ V +L
Sbjct: 68 GIEVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 127
>gi|116333280|ref|YP_794807.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
gi|116098627|gb|ABJ63776.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus brevis ATCC 367]
Length = 235
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D+ + L L +A Y+VV+ +G A + E F ++L D+++P+MD
Sbjct: 1 MS-RVLVVDDEPAIVTLLQYNLEQADYQVVTAIDGEQALNLALHEKFDVILLDLMLPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++ IT + ++KPF R+++ + ++
Sbjct: 60 GVEVTKRLRQEKVKTPIIMITAKTSEFDTVFGLELGADDYITKPFSPREVIARMKAVMRR 119
Query: 121 KN 122
+
Sbjct: 120 YH 121
>gi|78067197|ref|YP_369966.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77967942|gb|ABB09322.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 280
Score = 160 bits (406), Expect = 6e-38, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 40 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 99
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 100 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 159
Query: 121 K 121
+
Sbjct: 160 R 160
>gi|304407578|ref|ZP_07389230.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304343529|gb|EFM09371.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 233
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD + + L GY +G A +PF L++ D++MP MD
Sbjct: 1 MTRTILIVDDDRQIAELVDIYLRNEGYSTAIAGDGEEALRMFEAQPFDLIVLDVMMPRMD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL RR + ++ ++ A ++KPF+ +L V LL
Sbjct: 61 GLELCRRLRRDKSAETVPILMVSAKAEDMDKIMGLMTGADDYMTKPFNPLELTARVKSLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|163845708|ref|YP_001633752.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222523414|ref|YP_002567884.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163666997|gb|ABY33363.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222447293|gb|ACM51559.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 228
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R L AGY V+ G EE L++ D+++P MD
Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALEEQPDLIVLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E D+ ++ +T + L+KPF R+LV V +L
Sbjct: 61 GMEITARLRER-SDVYILMLTARSDEMDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|309789889|ref|ZP_07684467.1| transcriptional regulator [Oscillochloris trichoides DG6]
gi|308228096|gb|EFO81746.1| transcriptional regulator [Oscillochloris trichoides DG6]
Length = 234
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ M R L L GYEVV +G A ++ +++ D+ +P MD
Sbjct: 1 MSERILVVDDEPQMGRLLRTGLSARGYEVVVAADGQEALEQAVHWRPEVIVLDLGLPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ ++ ++ L KPF + +L+ + L
Sbjct: 61 GLEVCRRIRG-WSQVPIIVLSARDGEPDKVEALDLGADDYLVKPFGMDELLARIRVALRH 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|308068191|ref|YP_003869796.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305857470|gb|ADM69258.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 229
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD+ + L + L GYEV++ NGA +K+ +++ D++MP++D
Sbjct: 1 MRSTILIIDDDEKIVSMLRRGLAFEGYEVLTAANGAEGLNKMLTAEPDVVVLDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + V+ +T V L KPF L +L+ V LL
Sbjct: 61 GFEVCRRMREGGSTVPVLMLTAKDEVENRVKGLDLGADDYLVKPFALEELLARVRALLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|149011938|ref|ZP_01833086.1| response regulator [Streptococcus pneumoniae SP19-BS75]
gi|225857655|ref|YP_002739166.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae P1031]
gi|147763893|gb|EDK70826.1| response regulator [Streptococcus pneumoniae SP19-BS75]
gi|225725560|gb|ACO21412.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae P1031]
Length = 235
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GIEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|229551746|ref|ZP_04440471.1| response regulator [Lactobacillus rhamnosus LMS2-1]
gi|258507899|ref|YP_003170650.1| two-component response regulator [Lactobacillus rhamnosus GG]
gi|258539145|ref|YP_003173644.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
gi|229314877|gb|EEN80850.1| response regulator [Lactobacillus rhamnosus LMS2-1]
gi|257147826|emb|CAR86799.1| Two-component response regulator [Lactobacillus rhamnosus GG]
gi|257150821|emb|CAR89793.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
gi|259649226|dbj|BAI41388.1| two-component response regulator [Lactobacillus rhamnosus GG]
Length = 234
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+
Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R+ E +M +T ++KPF R+++ + + ++
Sbjct: 62 DVTRKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKA-IERRS 120
>gi|25027504|ref|NP_737558.1| two-component system response regulator [Corynebacterium efficiens
YS-314]
gi|259507088|ref|ZP_05749988.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
gi|23492786|dbj|BAC17758.1| two-component system response regulator [Corynebacterium efficiens
YS-314]
gi|259165366|gb|EEW49920.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length = 233
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ +R L ++L GY VV+ +G A + + E +++ D++MP MDG+E
Sbjct: 2 KVLVVDDEPAVRESLRRSLTFNGYNVVTAEDGVQALEVIEREHPEIVILDVMMPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L+KPF L +L+ V L+
Sbjct: 62 VCRTLRSQGDDRSILILTARDNVSDRVGGLDAGADDYLTKPFALEELLARVRSLVRR 118
>gi|157692813|ref|YP_001487275.1| response regulator [Bacillus pumilus SAFR-032]
gi|157681571|gb|ABV62715.1| response regulator [Bacillus pumilus SAFR-032]
Length = 240
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + YE+ NG A K + + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQSDYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T A + KPF R++V V LL +
Sbjct: 68 VCNQIRDK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 125
>gi|295425531|ref|ZP_06818222.1| response regulator [Lactobacillus amylolyticus DSM 11664]
gi|295064784|gb|EFG55701.1| response regulator [Lactobacillus amylolyticus DSM 11664]
Length = 265
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 28 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVEEYDPDLMILDLMLPKKD 87
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 88 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 146
Query: 121 KN 122
++
Sbjct: 147 RD 148
>gi|225868204|ref|YP_002744152.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus equi subsp. zooepidemicus]
gi|225870859|ref|YP_002746806.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus equi subsp. equi 4047]
gi|225700263|emb|CAW94500.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus equi subsp. equi 4047]
gi|225701480|emb|CAW98631.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus equi subsp. zooepidemicus]
Length = 240
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + R L L K G+ +G +A EP+ ++ DI++P++D
Sbjct: 1 MTKRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + ++KPF R+L+ V +L
Sbjct: 61 GIEVCKRLRAKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRR 120
>gi|225574100|ref|ZP_03782711.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
10507]
gi|225038700|gb|EEG48946.1| hypothetical protein RUMHYD_02165 [Blautia hydrogenotrophica DSM
10507]
Length = 242
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K Y+ N+G A + L+L D+++P MDG
Sbjct: 14 KQKILIVDDDNNIAELIALYLTKECYDTCIVNDGEQALREFEHFRPDLILLDLMLPGMDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ + KPF ++LV V +L
Sbjct: 74 YQVCREIR-HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 131
>gi|77918267|ref|YP_356082.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
2380]
gi|77544350|gb|ABA87912.1| two-component response regulator PhoB [Pelobacter carbinolicus DSM
2380]
Length = 230
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED++D+ L L + G+ V G + + E+P L++ D+++P MDG
Sbjct: 3 KKHILVVEDEEDILALLHYNLVREGFRVSLAGTGEEGLETLAEDPPDLVVLDLMLPGMDG 62
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+++ R E + V+ +T A ++KPF + L+ + +L
Sbjct: 63 LQVCRALKENADTRHIAVVMVTAKGEEADVVAGLELGADDYVTKPFSPKILIARIRSVLR 122
Query: 120 IK 121
+
Sbjct: 123 RR 124
>gi|320162273|ref|YP_004175498.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319996127|dbj|BAJ64898.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 225
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD+ + R L +AL GY V S G + RE L++ D ++P MD
Sbjct: 1 MKERILIIEDDEGIVRVLKRALTYEGYLVESALEGETGLQLAREHRPDLIILDWMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R L + ++ +T + ++KPF L +L+ + LL
Sbjct: 61 GLEVCQRLRTLC-NAPILMLTAKDTLQDRVQGLDAGADDYMTKPFELEELLARIRALLRR 119
>gi|56419443|ref|YP_146761.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|56379285|dbj|BAD75193.1| two-component response regulator [Geobacillus kaustophilus HTA426]
Length = 224
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMD
Sbjct: 1 MT-RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D D+ ++ +T L KPF +LV V LL
Sbjct: 60 GWELCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKR 118
>gi|82751281|ref|YP_417022.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus RF122]
gi|258424109|ref|ZP_05686991.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus A9635]
gi|282916953|ref|ZP_06324711.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus D139]
gi|283770757|ref|ZP_06343649.1| two-component system OmpR family alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus H19]
gi|82656812|emb|CAI81241.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus RF122]
gi|257845730|gb|EEV69762.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus A9635]
gi|282319440|gb|EFB49792.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus D139]
gi|283460904|gb|EFC07994.1| two-component system OmpR family alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus H19]
gi|298694963|gb|ADI98185.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus ED133]
gi|302333358|gb|ADL23551.1| response regulator OmpR [Staphylococcus aureus subsp. aureus
JKD6159]
gi|323440763|gb|EGA98472.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus O11]
gi|323442918|gb|EGB00541.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus O46]
Length = 234
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGYEVV +G A +KV E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|330831636|ref|YP_004394588.1| winged helix family two component transcriptional regulator
[Aeromonas veronii B565]
gi|328806772|gb|AEB51971.1| Two component transcriptional regulator, winged helix family
[Aeromonas veronii B565]
Length = 240
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +DD ++R L + L +AG++V++ G ++ + L++ DI+MP D
Sbjct: 3 MSKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLAQHSPDLIILDIMMPGED 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ D + ++ +T + A ++KPF R+L + LL
Sbjct: 63 GFTLCQQIR-RDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRR 121
>gi|318058513|ref|ZP_07977236.1| two-component system response regulator [Streptomyces sp. SA3_actG]
Length = 257
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + + L +AG V +G SA + L++ D+++P MDG+E
Sbjct: 18 HVLVVDDDPTVAEVVAGYLLRAGCTVDRAGDGPSALARAHTHRPDLVVLDLMLPGMDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+ +T ++KPF R+LV V +L
Sbjct: 78 VCRRMRERHP-VPVIMLTARGDEDDRILGLERGADDYVTKPFSPRELVLRVESVLRR 133
>gi|29375768|ref|NP_814922.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
gi|227518447|ref|ZP_03948496.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
gi|227552977|ref|ZP_03983026.1| DNA-binding response regulator [Enterococcus faecalis HH22]
gi|229546129|ref|ZP_04434854.1| DNA-binding response regulator protein [Enterococcus faecalis
TX1322]
gi|229550318|ref|ZP_04439043.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
gi|255973090|ref|ZP_05423676.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|255976129|ref|ZP_05426715.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis T2]
gi|256618776|ref|ZP_05475622.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
4200]
gi|256762196|ref|ZP_05502776.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256852841|ref|ZP_05558211.1| VicR protein [Enterococcus faecalis T8]
gi|256958685|ref|ZP_05562856.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
gi|256962217|ref|ZP_05566388.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Merz96]
gi|256965407|ref|ZP_05569578.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis HIP11704]
gi|257077961|ref|ZP_05572322.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis JH1]
gi|257082850|ref|ZP_05577211.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
gi|257085548|ref|ZP_05579909.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Fly1]
gi|257086546|ref|ZP_05580907.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis D6]
gi|257089603|ref|ZP_05583964.1| two component system response regulator vicR [Enterococcus faecalis
CH188]
gi|257415810|ref|ZP_05592804.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
gi|257419019|ref|ZP_05596013.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|257422896|ref|ZP_05599886.1| two component system response regulator vicR [Enterococcus faecalis
X98]
gi|293383244|ref|ZP_06629160.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
gi|293387601|ref|ZP_06632147.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
gi|294781108|ref|ZP_06746458.1| response regulator receiver domain protein [Enterococcus faecalis
PC1.1]
gi|300860056|ref|ZP_07106144.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TUSoD Ef11]
gi|307268695|ref|ZP_07550064.1| response regulator receiver domain protein [Enterococcus faecalis
TX4248]
gi|307273520|ref|ZP_07554763.1| response regulator receiver domain protein [Enterococcus faecalis
TX0855]
gi|307274483|ref|ZP_07555666.1| response regulator receiver domain protein [Enterococcus faecalis
TX2134]
gi|307279011|ref|ZP_07560069.1| response regulator receiver domain protein [Enterococcus faecalis
TX0860]
gi|307288506|ref|ZP_07568492.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|307291176|ref|ZP_07571061.1| response regulator receiver domain protein [Enterococcus faecalis
TX0411]
gi|312899664|ref|ZP_07758988.1| response regulator receiver domain protein [Enterococcus faecalis
TX0470]
gi|312903943|ref|ZP_07763112.1| response regulator receiver domain protein [Enterococcus faecalis
TX0635]
gi|312907168|ref|ZP_07766159.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 512]
gi|312909787|ref|ZP_07768635.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 516]
gi|312951046|ref|ZP_07769954.1| response regulator receiver domain protein [Enterococcus faecalis
TX0102]
gi|29343229|gb|AAO80992.1| DNA-binding response regulator VicR [Enterococcus faecalis V583]
gi|227074125|gb|EEI12088.1| DNA-binding response regulator [Enterococcus faecalis TX0104]
gi|227177886|gb|EEI58858.1| DNA-binding response regulator [Enterococcus faecalis HH22]
gi|229304581|gb|EEN70577.1| DNA-binding response regulator [Enterococcus faecalis ATCC 29200]
gi|229308653|gb|EEN74640.1| DNA-binding response regulator protein [Enterococcus faecalis
TX1322]
gi|255964108|gb|EET96584.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|255969001|gb|EET99623.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis T2]
gi|256598303|gb|EEU17479.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
4200]
gi|256683447|gb|EEU23142.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256711300|gb|EEU26338.1| VicR protein [Enterococcus faecalis T8]
gi|256949181|gb|EEU65813.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
gi|256952713|gb|EEU69345.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Merz96]
gi|256955903|gb|EEU72535.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis HIP11704]
gi|256985991|gb|EEU73293.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis JH1]
gi|256990880|gb|EEU78182.1| DNA-binding response regulator VicR [Enterococcus faecalis E1Sol]
gi|256993578|gb|EEU80880.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Fly1]
gi|256994576|gb|EEU81878.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis D6]
gi|256998415|gb|EEU84935.1| two component system response regulator vicR [Enterococcus faecalis
CH188]
gi|257157638|gb|EEU87598.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
gi|257160847|gb|EEU90807.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|257164720|gb|EEU94680.1| two component system response regulator vicR [Enterococcus faecalis
X98]
gi|291079422|gb|EFE16786.1| DNA-binding response regulator VicR [Enterococcus faecalis R712]
gi|291082933|gb|EFE19896.1| DNA-binding response regulator VicR [Enterococcus faecalis S613]
gi|294451786|gb|EFG20238.1| response regulator receiver domain protein [Enterococcus faecalis
PC1.1]
gi|300850874|gb|EFK78623.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TUSoD Ef11]
gi|306497830|gb|EFM67362.1| response regulator receiver domain protein [Enterococcus faecalis
TX0411]
gi|306500581|gb|EFM69912.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|306504136|gb|EFM73348.1| response regulator receiver domain protein [Enterococcus faecalis
TX0860]
gi|306508877|gb|EFM77964.1| response regulator receiver domain protein [Enterococcus faecalis
TX2134]
gi|306509797|gb|EFM78824.1| response regulator receiver domain protein [Enterococcus faecalis
TX0855]
gi|306515007|gb|EFM83553.1| response regulator receiver domain protein [Enterococcus faecalis
TX4248]
gi|310626196|gb|EFQ09479.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 512]
gi|310631001|gb|EFQ14284.1| response regulator receiver domain protein [Enterococcus faecalis
TX0102]
gi|310632663|gb|EFQ15946.1| response regulator receiver domain protein [Enterococcus faecalis
TX0635]
gi|311289745|gb|EFQ68301.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 516]
gi|311293170|gb|EFQ71726.1| response regulator receiver domain protein [Enterococcus faecalis
TX0470]
gi|315027746|gb|EFT39678.1| response regulator receiver domain protein [Enterococcus faecalis
TX2137]
gi|315029162|gb|EFT41094.1| response regulator receiver domain protein [Enterococcus faecalis
TX4000]
gi|315031521|gb|EFT43453.1| response regulator receiver domain protein [Enterococcus faecalis
TX0017]
gi|315035063|gb|EFT46995.1| response regulator receiver domain protein [Enterococcus faecalis
TX0027]
gi|315145504|gb|EFT89520.1| response regulator receiver domain protein [Enterococcus faecalis
TX2141]
gi|315147675|gb|EFT91691.1| response regulator receiver domain protein [Enterococcus faecalis
TX4244]
gi|315151377|gb|EFT95393.1| response regulator receiver domain protein [Enterococcus faecalis
TX0012]
gi|315154083|gb|EFT98099.1| response regulator receiver domain protein [Enterococcus faecalis
TX0031]
gi|315157370|gb|EFU01387.1| response regulator receiver domain protein [Enterococcus faecalis
TX0043]
gi|315162567|gb|EFU06584.1| response regulator receiver domain protein [Enterococcus faecalis
TX0645]
gi|315165410|gb|EFU09427.1| response regulator receiver domain protein [Enterococcus faecalis
TX1302]
gi|315166596|gb|EFU10613.1| response regulator receiver domain protein [Enterococcus faecalis
TX1341]
gi|315169875|gb|EFU13892.1| response regulator receiver domain protein [Enterococcus faecalis
TX1342]
gi|315172774|gb|EFU16791.1| response regulator receiver domain protein [Enterococcus faecalis
TX1346]
gi|315575748|gb|EFU87939.1| response regulator receiver domain protein [Enterococcus faecalis
TX0309B]
gi|315578292|gb|EFU90483.1| response regulator receiver domain protein [Enterococcus faecalis
TX0630]
gi|315579808|gb|EFU91999.1| response regulator receiver domain protein [Enterococcus faecalis
TX0309A]
gi|323480426|gb|ADX79865.1| response regulator [Enterococcus faecalis 62]
gi|327534818|gb|AEA93652.1| response regulator [Enterococcus faecalis OG1RF]
Length = 234
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|320547235|ref|ZP_08041528.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
gi|320448123|gb|EFW88873.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
Length = 236
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYE V+ +G A +K EE L++ D+++P +DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAIEKFEEENPDLIILDLMLPGLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|168178458|ref|ZP_02613122.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182670774|gb|EDT82748.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 233
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|319892740|ref|YP_004149615.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus pseudintermedius HKU10-03]
gi|317162436|gb|ADV05979.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus pseudintermedius HKU10-03]
gi|323464228|gb|ADX76381.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus pseudintermedius ED99]
Length = 234
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ +D+ + L L ++GY V +G A K +E L++ D+++P+ D
Sbjct: 1 MAQRVLVVDDEQSIVTLLKYNLEQSGYVVEVAQDGEEALQKEKETKPDLIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNQVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|158338752|ref|YP_001519929.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158308993|gb|ABW30610.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 243
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+VV+ +G A D L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLSMIGYDVVTAADGEEAIDTFHHAIPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|312622321|ref|YP_004023934.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202788|gb|ADQ46115.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
Length = 223
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E +L++ DI++P+ DG E
Sbjct: 2 KILVIDDDVKICEVIKLYLEKEGFEVVIAHNGMDGIAMFKNEMPNLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|225023059|ref|ZP_03712251.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
ATCC 33806]
gi|305682004|ref|ZP_07404808.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
gi|224944282|gb|EEG25491.1| hypothetical protein CORMATOL_03107 [Corynebacterium matruchotii
ATCC 33806]
gi|305658477|gb|EFM47980.1| response regulator MprA [Corynebacterium matruchotii ATCC 14266]
Length = 230
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +D+ +R L ++L GY++ +G A D + +E L++ D++MP+MDG+E
Sbjct: 2 KIVVVDDEQAVRDSLRRSLSFNGYDIAIAEDGEQALDVIEKEQPDLVILDVMMPKMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V LL
Sbjct: 62 VCRHLRSHGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118
>gi|295107994|emb|CBL21947.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 233
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E N+G A + L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFETKIVNDGEQALKEFNTFHPDLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + D+ ++ ++ + KPF ++LV V +L
Sbjct: 64 YQVCREIR-HNSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121
>gi|297193530|ref|ZP_06910928.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718196|gb|EDY62104.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 237
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L ++L GY +G A + L++ DI MP MDG+
Sbjct: 5 ERILIVDDEPAVREALQRSLAFEGYGTEVAADGIDALARAEVYAPDLIVLDIQMPRMDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + ++ +T V L KPF L +L + LL +
Sbjct: 65 TAARRLRAAGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 124
>gi|223043539|ref|ZP_03613584.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus capitis SK14]
gi|314933846|ref|ZP_07841211.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus caprae C87]
gi|222443027|gb|EEE49127.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus capitis SK14]
gi|313653996|gb|EFS17753.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus caprae C87]
Length = 236
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A KV EE L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVEEEQPELIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|294084770|ref|YP_003551528.1| winged helix family two component transcriptional regulator
[Candidatus Puniceispirillum marinum IMCC1322]
gi|292664343|gb|ADE39444.1| two component transcriptional regulator, winged helix family
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 235
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+A+D+ + L L +AG+ V +G A + V + L++ D +MP M
Sbjct: 2 MNAKILIADDEPNQLELLSFNLRQAGFTVFEAADGRQAVNMVEDLQPDLIILDWMMPHMS 61
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R DL V+ ++ ++KPF R+LV+ V LL
Sbjct: 62 GIEVCRLFRSRTETKDLPVIILSARGEEGDRTLGLDTGADDYITKPFSPRELVSRVKALL 121
Query: 119 TI 120
Sbjct: 122 RR 123
>gi|163839245|ref|YP_001623650.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
gi|162952721|gb|ABY22236.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
Length = 239
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG++VV+ NG A E L + D+++P+MDG
Sbjct: 12 RLLVVDDEPNIRELLSTSLRFAGFDVVAAGNGREALTAAEEHNPDLAVLDVMLPDMDGFT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+F+T ++KPF L ++V + +L
Sbjct: 72 VTRRLRAAGRHFPVLFLTARDDTKDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 128
>gi|116494441|ref|YP_806175.1| DNA-binding response regulator [Lactobacillus casei ATCC 334]
gi|191637826|ref|YP_001986992.1| Putative response regulator [Lactobacillus casei BL23]
gi|227535595|ref|ZP_03965644.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239631190|ref|ZP_04674221.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065951|ref|YP_003787974.1| OmpR family DNA-binding response regulator [Lactobacillus casei
str. Zhang]
gi|116104591|gb|ABJ69733.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus casei ATCC 334]
gi|190712128|emb|CAQ66134.1| Putative response regulator [Lactobacillus casei BL23]
gi|227186725|gb|EEI66792.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|239525655|gb|EEQ64656.1| DNA-binding response regulator [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438358|gb|ADK18124.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus casei str. Zhang]
gi|327381892|gb|AEA53368.1| VicR protein [Lactobacillus casei LC2W]
gi|327385053|gb|AEA56527.1| VicR protein [Lactobacillus casei BD-II]
Length = 235
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+
Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRNEPFDFIILDLMLPSLSGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R+ E +M +T ++KPF R+++ + + ++
Sbjct: 62 DVTRKIREDKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKA-IERRS 120
>gi|296132714|ref|YP_003639961.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296031292|gb|ADG82060.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 232
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+A+D+ + +FL L + G+ V + NG A + LL+ D++MP+MDG
Sbjct: 4 KKILIADDEPKILKFLAGFLQREGFAVATAANGFDALAEFNRWQPDLLVLDVMMPKMDGY 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ E ++ ++F+T + L+KPF +L+ + +L
Sbjct: 64 EVCRKIREQ-SNVPIIFLTAKNETFDKIMGLTLGSDDYLTKPFDSAELLLRIRAILRR 120
>gi|194016744|ref|ZP_03055357.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
7061]
gi|194011350|gb|EDW20919.1| transcriptional regulatory protein ResD [Bacillus pumilus ATCC
7061]
Length = 240
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + YE+ NG A K + + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLKMYLERENYEIDEAENGDEAIQKGLQTDYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T A + KPF R++V V LL +
Sbjct: 68 VCNQIRDK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 125
>gi|229087145|ref|ZP_04219295.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-44]
gi|228696213|gb|EEL49048.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Bacillus cereus Rock3-44]
Length = 238
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D++ + + L +AG+EV++ +G A K E L++ D+++P+MD
Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVALQKAVTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|239827301|ref|YP_002949925.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239807594|gb|ACS24659.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 225
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D++DMR + L A + + NG A ++ ++L D++MP+MDG
Sbjct: 3 KKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D+ ++F+T + KPF +L+ + ++
Sbjct: 63 FTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRR 120
>gi|320159586|ref|YP_004172810.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319993439|dbj|BAJ62210.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 238
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ L L + GYEV +G A D RE ++L D+++P MD
Sbjct: 1 MAEKILVVEDERALQETLEYNLKRQGYEVQVAGDGILALDLAREFQPEIILLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL RR + + V+ +T ++KPF +R+L+ V +L
Sbjct: 61 GFELCRRLRQEM-NTPVLMLTARTEEIDRVVGLEVGADDYMTKPFSMRELLARVKAMLRR 119
>gi|270289944|ref|ZP_06196170.1| two-component system, OmpR family, response regulator VicR
[Pediococcus acidilactici 7_4]
gi|304385805|ref|ZP_07368149.1| response regulator [Pediococcus acidilactici DSM 20284]
gi|270281481|gb|EFA27313.1| two-component system, OmpR family, response regulator VicR
[Pediococcus acidilactici 7_4]
gi|304328309|gb|EFL95531.1| response regulator [Pediococcus acidilactici DSM 20284]
Length = 233
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L K GY+VV+ +G A +KV E L+L D+++P++DG+E
Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALEKVESEEPDLILLDLMLPKIDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+AR+ ++ ++ +T + ++KPF R+LV V L ++
Sbjct: 63 VARQVRAKH-NIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQD 120
>gi|229195595|ref|ZP_04322361.1| Two-component response regulator [Bacillus cereus m1293]
gi|228587844|gb|EEK45896.1| Two-component response regulator [Bacillus cereus m1293]
Length = 218
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWEEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|126651967|ref|ZP_01724159.1| two-component response regulator [Bacillus sp. B14905]
gi|126591236|gb|EAZ85345.1| two-component response regulator [Bacillus sp. B14905]
Length = 237
Score = 159 bits (405), Expect = 8e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ + L L K GY+V+ +G A KV EE L+L DI++P+ D
Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D ++ +T + ++KPF R+L+ V +
Sbjct: 61 GMEVCREIRKKY-DFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRR 119
>gi|269975939|ref|ZP_06182943.1| response regulator MprA [Mobiluncus mulieris 28-1]
gi|307700377|ref|ZP_07637416.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
gi|269935767|gb|EEZ92297.1| response regulator MprA [Mobiluncus mulieris 28-1]
gi|307614362|gb|EFN93592.1| putative response regulator MprA [Mobiluncus mulieris FB024-16]
Length = 255
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG
Sbjct: 25 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D+ ++F+T + + ++KPF L ++V +N +L
Sbjct: 85 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 141
>gi|308233471|ref|ZP_07664208.1| two component transcriptional regulator, winged helix family
protein [Atopobium vaginae DSM 15829]
gi|328943477|ref|ZP_08240942.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
gi|327491446|gb|EGF23220.1| DNA-binding response regulator [Atopobium vaginae DSM 15829]
Length = 241
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ +R + L + GY V S +G SA ++ + F L++ D+++P++ G
Sbjct: 6 KRILLVEDEKTIRDAVAAYLEREGYFVRSVGDGQSALEEFEKHSFDLIILDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E ++ ++ +T V L KPF R+LV V LL +
Sbjct: 66 RVCRAVRE-TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAH 124
>gi|154509502|ref|ZP_02045144.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
17982]
gi|153799136|gb|EDN81556.1| hypothetical protein ACTODO_02034 [Actinomyces odontolyticus ATCC
17982]
Length = 227
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L GYEVV C +G++A + +E L+L D+++P MD
Sbjct: 1 MSSRILVVDDDVALAEMIGIVLQNEGYEVVFCADGSAALTQFQEHNPDLVLLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + D ++ +T + + + KPF ++LV V L
Sbjct: 61 GFDVCRAIRRV-SDAPIVMLTARSDTSDVVTGLEAGADDYVPKPFKPKELVARVRARLRG 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|49483935|ref|YP_041159.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MRSA252]
gi|257425808|ref|ZP_05602232.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257428474|ref|ZP_05604872.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257431108|ref|ZP_05607485.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 68-397]
gi|257433791|ref|ZP_05610149.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus E1410]
gi|257436707|ref|ZP_05612751.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus M876]
gi|282904264|ref|ZP_06312152.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus C160]
gi|282906089|ref|ZP_06313944.1| two-component system OmpR family alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282909004|ref|ZP_06316822.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911320|ref|ZP_06319122.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914489|ref|ZP_06322275.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus M899]
gi|282919458|ref|ZP_06327193.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus subsp. aureus C427]
gi|282924835|ref|ZP_06332501.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus C101]
gi|283958444|ref|ZP_06375895.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus A017934/97]
gi|293503567|ref|ZP_06667414.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510582|ref|ZP_06669287.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus subsp. aureus M809]
gi|293537124|ref|ZP_06671804.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus M1015]
gi|295428264|ref|ZP_06820893.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297590773|ref|ZP_06949411.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|49242064|emb|CAG40763.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus MRSA252]
gi|257271502|gb|EEV03648.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 55/2053]
gi|257275315|gb|EEV06802.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 65-1322]
gi|257278056|gb|EEV08704.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus 68-397]
gi|257281884|gb|EEV12021.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus E1410]
gi|257284058|gb|EEV14181.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus M876]
gi|282313201|gb|EFB43597.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus C101]
gi|282317268|gb|EFB47642.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus subsp. aureus C427]
gi|282321670|gb|EFB51995.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus M899]
gi|282325015|gb|EFB55325.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282327268|gb|EFB57563.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331381|gb|EFB60895.1| two-component system OmpR family alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282595882|gb|EFC00846.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus C160]
gi|283470960|emb|CAQ50171.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus aureus subsp. aureus ST398]
gi|283790593|gb|EFC29410.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus A017934/97]
gi|290919969|gb|EFD97037.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus aureus subsp. aureus M1015]
gi|291095233|gb|EFE25498.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466473|gb|EFF08994.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Staphylococcus aureus subsp. aureus M809]
gi|295127664|gb|EFG57301.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297575659|gb|EFH94375.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|312437849|gb|ADQ76920.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
gi|315195597|gb|EFU25984.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus aureus subsp. aureus CGS00]
Length = 233
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGYEVV +G A +KV E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEHSIVTLLKYNLETAGYEVVVAFDGDEALEKVENEQPDLIILDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIDVCKTVRTNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|297530901|ref|YP_003672176.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297254153|gb|ADI27599.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 226
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R + L G+ + NG A D + L++ DI+MPEMD
Sbjct: 3 MT-RILIVDDDAHIRELVSHFLNLEGFTIHEAANGKEALDVLETVKVDLVIMDIMMPEMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D D+ ++ +T L KPF +LV V LL
Sbjct: 62 GWELCRELRDYD-DVPILMLTAKGETRQKVKGFELGADDYLVKPFDPLELVARVKALLKR 120
>gi|317123887|ref|YP_004097999.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315587975|gb|ADU47272.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 240
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++R L +L AG++V + ++G +A E L++ D+++P++DG E
Sbjct: 12 RLLVVEDEPNIRELLSTSLRFAGFDVRTADDGETALRLAEEYHPDLVVLDVMLPDVDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+F+T V ++KPF L ++V + +L
Sbjct: 72 VTRRLRERGREQAVLFLTARDEVRDKVHGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128
>gi|158452067|gb|ABW39375.1| PhoP [Bacillus subtilis]
Length = 239
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D++ + L L ++GY+V++ ++G A K E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEESV-TLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T ++KPF R++ V +L
Sbjct: 60 GIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 119
>gi|147678166|ref|YP_001212381.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146274263|dbj|BAF60012.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 239
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ + L + GY+V++ +G + R E L++ D+++P M+G+E
Sbjct: 3 KILVVDDEKNILELVRFNLEREGYQVLTALDGPQGLELARAERPDLIVLDVMLPGMNGLE 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+ ++ A ++KPF R+LV + L
Sbjct: 63 VCREMHRDAATKNIPVIMLSARAEELDRVLGLEMGADDYITKPFSPRELVARIKARLRR 121
>gi|146297552|ref|YP_001181323.1| two component transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145411128|gb|ABP68132.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 230
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY++ + +G A +K++ E F ++L D+++P+M
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKITTSYDGEDALNKIKNENFDMVLLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E ++ ++ IT A ++KPF +R+L+ + L
Sbjct: 61 DGFTVCKKVRE-FSEVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|28377004|ref|NP_783896.1| response regulator [Lactobacillus plantarum WCFS1]
gi|28269835|emb|CAD62732.1| response regulator [Lactobacillus plantarum WCFS1]
Length = 235
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV +G A KV E L+L D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+AR+ + D+ ++ +T + ++KPF R+LV V L +
Sbjct: 62 EVARQVRKNY-DMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 119
>gi|15608121|ref|NP_215496.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis H37Rv]
gi|15840406|ref|NP_335443.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|148660762|ref|YP_001282285.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis H37Ra]
gi|148822190|ref|YP_001286944.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis F11]
gi|167968048|ref|ZP_02550325.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis H37Ra]
gi|215402797|ref|ZP_03414978.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis 02_1987]
gi|215410580|ref|ZP_03419388.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis 94_M4241A]
gi|215445129|ref|ZP_03431881.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis T85]
gi|218752651|ref|ZP_03531447.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis GM 1503]
gi|253799991|ref|YP_003032992.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis KZN 1435]
gi|254363900|ref|ZP_04979946.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|254549965|ref|ZP_05140412.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|289555237|ref|ZP_06444447.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis KZN 605]
gi|289744717|ref|ZP_06504095.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis 02_1987]
gi|289757064|ref|ZP_06516442.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis T85]
gi|289761115|ref|ZP_06520493.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis GM 1503]
gi|294996473|ref|ZP_06802164.1| persistence regulator MprA [Mycobacterium tuberculosis 210]
gi|297633506|ref|ZP_06951286.1| persistence regulator MprA [Mycobacterium tuberculosis KZN 4207]
gi|297730491|ref|ZP_06959609.1| persistence regulator MprA [Mycobacterium tuberculosis KZN R506]
gi|298524475|ref|ZP_07011884.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis 94_M4241A]
gi|306775116|ref|ZP_07413453.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu001]
gi|306781969|ref|ZP_07420306.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu002]
gi|306783676|ref|ZP_07421998.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu003]
gi|306788030|ref|ZP_07426352.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu004]
gi|306792364|ref|ZP_07430666.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu005]
gi|306796766|ref|ZP_07435068.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu006]
gi|306802653|ref|ZP_07439321.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu008]
gi|306806833|ref|ZP_07443501.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu007]
gi|306967031|ref|ZP_07479692.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu009]
gi|306971221|ref|ZP_07483882.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu010]
gi|307078952|ref|ZP_07488122.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu011]
gi|313657820|ref|ZP_07814700.1| persistence regulator MprA [Mycobacterium tuberculosis KZN V2475]
gi|81816332|sp|O53894|MPRA_MYCTU RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012482|sp|A5U123|MPRA_MYCTA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|2916942|emb|CAA17580.1| MYCOBACTERIAL PERSISTENCE REGULATOR MRPA (TWO COMPONENT RESPONSE
TRANSCRIPTIONAL REGULATORY PROTEIN) [Mycobacterium
tuberculosis H37Rv]
gi|13880575|gb|AAK45257.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|134149414|gb|EBA41459.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis str. Haarlem]
gi|148504914|gb|ABQ72723.1| mycobacterial persistence regulator MrpA [Mycobacterium
tuberculosis H37Ra]
gi|148720717|gb|ABR05342.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis F11]
gi|253321494|gb|ACT26097.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis KZN 1435]
gi|289439869|gb|EFD22362.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis KZN 605]
gi|289685245|gb|EFD52733.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis 02_1987]
gi|289708621|gb|EFD72637.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis GM 1503]
gi|289712628|gb|EFD76640.1| two component response transcriptional regulatory protein MprA
[Mycobacterium tuberculosis T85]
gi|298494269|gb|EFI29563.1| mycobacterial persistence regulator mprA (two component response
transcriptional regulatory protein) [Mycobacterium
tuberculosis 94_M4241A]
gi|308216323|gb|EFO75722.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu001]
gi|308325360|gb|EFP14211.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu002]
gi|308331519|gb|EFP20370.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu003]
gi|308335324|gb|EFP24175.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu004]
gi|308339132|gb|EFP27983.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu005]
gi|308342803|gb|EFP31654.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu006]
gi|308346656|gb|EFP35507.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu007]
gi|308350571|gb|EFP39422.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu008]
gi|308355261|gb|EFP44112.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu009]
gi|308359215|gb|EFP48066.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu010]
gi|308363126|gb|EFP51977.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu011]
gi|323720547|gb|EGB29628.1| myco persistence regulator mprA [Mycobacterium tuberculosis
CDC1551A]
gi|326904793|gb|EGE51726.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis W-148]
gi|328459733|gb|AEB05156.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis KZN 4207]
Length = 230
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +D
Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|226358082|ref|YP_002787821.1| response regulator, CheY [Deinococcus deserti VCD115]
gi|226319725|gb|ACO47719.1| putative response regulator, CheY [Deinococcus deserti VCD115]
Length = 225
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R L + L G+ V + +G + VR+ P L++ D+++P +D
Sbjct: 1 MSPRILVIDDDAGVRSLLQRGLSYEGFLVETAADGETGLAAVRDRPPDLVILDVMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R +D +L V+ +T ++KPF L V L
Sbjct: 61 GLEVLSRLRRVDANLPVVMLTARDRPDEQVRGLERGADDYVTKPFSFDVLAARVRAQLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|148984378|ref|ZP_01817666.1| response regulator [Streptococcus pneumoniae SP3-BS71]
gi|147923155|gb|EDK74269.1| response regulator [Streptococcus pneumoniae SP3-BS71]
gi|301800830|emb|CBW33486.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae OXC141]
Length = 235
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + R L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILRLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GIEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|7144547|gb|AAA62132.2| orf246; ompR homolog [Rhodella violacea]
Length = 247
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ MRR L L GY V+S ++G A + R+E +L++ DI+MP++DG
Sbjct: 12 TILIVDDEASMRRLLEYRLSIIGYNVISASDGEEALNIFRKEHPNLIVLDIMMPKLDGFG 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D+ ++ +TG + L KPF ++L + +L +
Sbjct: 72 VCQEIRKE-SDIPIIMLTGLGDIVDRITGLELGADDYLVKPFSPKELEARIKSVLRRSD 129
>gi|332971704|gb|EGK10652.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 237
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L K L K Y+V NG A + ++L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKKYLEKEFYKVDVAGNGEEALHLFDDNKYNLIILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + ++V V LL
Sbjct: 65 VCRRLRNKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSINEVVARVKALLRR 120
>gi|218291254|ref|ZP_03495238.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|218238856|gb|EED06067.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
Length = 230
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L AL + GY V +GA A + R L+L D+++PE+D
Sbjct: 1 MPAHILVVEDEEPIANILRFALEREGYRVSCAYDGAEALQRWRALQPDLILLDVMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+ +T ++KPF R+LV V L
Sbjct: 61 GFDVLRAIRQA-SGVPVIILTAKDDEVDKVLGLELGADDYVTKPFSTRELVARVKANLRR 119
>gi|220929311|ref|YP_002506220.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999639|gb|ACL76240.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 228
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + L K GYEV+ NG +A D + + SL++ DI++P +DG +
Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ + ++ +T + KPF ++LV V +L
Sbjct: 66 VCREIRKV-SSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121
>gi|290959362|ref|YP_003490544.1| two-component systen response regulator [Streptomyces scabiei
87.22]
gi|260648888|emb|CBG72002.1| putative two-component systen response regulator [Streptomyces
scabiei 87.22]
Length = 244
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +GA A +K L++ D+ MP MDG+
Sbjct: 11 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGADALEKATAYRPDLVILDVQMPRMDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L V LL
Sbjct: 71 TAARRIRGAGDTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRR 128
>gi|296140967|ref|YP_003648210.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
gi|296029101|gb|ADG79871.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length = 228
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V + +G A D + L+ D+ MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYQVDTAVDGQDALDHIASNRPDALVLDLNMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR DL ++ +T V+ L KPF L +L+ + LL
Sbjct: 62 VCRRLRSAGDDLPILVLTARDGVSDRVSGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|291295786|ref|YP_003507184.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
gi|290470745|gb|ADD28164.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
Length = 241
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL ED+ + L L GY V +G +A ++ L++ D+++P ++
Sbjct: 1 MKPKVLLVEDEPALAGALADNLEGEGYAVEVAPDGRAALERWAAWNPDLVVLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ V+F++ A + L+KPFHL + + V LL
Sbjct: 61 GLQVCRQMRAQGQTTPVLFLSAKGAPEERVEGLRVGGDDYLAKPFHLPEFLLRVKNLLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|148241349|ref|YP_001226506.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147849659|emb|CAK27153.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 252
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + EP L++ D++MP++DG
Sbjct: 11 KETILVVDDEASIRRILETRLSMIGYNVVTAADGEEALEAFHREPTDLVVLDVMMPKLDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 71 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 128
>gi|303242284|ref|ZP_07328771.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302590194|gb|EFL59955.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 228
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R F+I L + +EV+ G A V+ E L+L DI++P+MD
Sbjct: 1 MGARILVVDDEKSIRSFIITNLKRNNFEVLEAGTGHEALRLVKFEKPDLVLLDIMLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + P L V+ +T + KPF +LV + +L
Sbjct: 61 GFQVCKEISCDYPSLSVIMLTARGQDLDKVRGLELGADDYIIKPFSPMELVARIKAILRR 120
>gi|269103478|ref|ZP_06156175.1| chitin catabolic cascade sensor histidine kinase ChiS
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268163376|gb|EEZ41872.1| chitin catabolic cascade sensor histidine kinase ChiS
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 1130
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L L GY V++ +G A + V+ +L+L DI+MPEM G E+
Sbjct: 724 LVVDDEPVNLQILNNFLRLEGYRVLTAESGKQALELVQSHKPALILLDIMMPEMSGYEVC 783
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + +L +M ++ V L+KPF+ +L + L
Sbjct: 784 SQLRQQYTPLELPIMMLSALGQVKDRVKGFECGANDYLTKPFNKEELTARIKAHL 838
>gi|328469451|gb|EGF40397.1| putative two-component response regulator [Vibrio parahaemolyticus
10329]
Length = 235
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + + + + L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGAMWQLLNDHHPDLIILDIMMPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + D+ ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|16802333|ref|NP_463818.1| hypothetical protein lmo0287 [Listeria monocytogenes EGD-e]
gi|47096376|ref|ZP_00233971.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|224498864|ref|ZP_03667213.1| hypothetical protein LmonF1_03833 [Listeria monocytogenes Finland
1988]
gi|224502419|ref|ZP_03670726.1| hypothetical protein LmonFR_07849 [Listeria monocytogenes FSL
R2-561]
gi|254828747|ref|ZP_05233434.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|254900524|ref|ZP_05260448.1| hypothetical protein LmonJ_11939 [Listeria monocytogenes J0161]
gi|254913525|ref|ZP_05263537.1| DNA-binding response regulator [Listeria monocytogenes J2818]
gi|254937894|ref|ZP_05269591.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|255026056|ref|ZP_05298042.1| hypothetical protein LmonocytFSL_06315 [Listeria monocytogenes FSL
J2-003]
gi|255029993|ref|ZP_05301944.1| hypothetical protein LmonL_14634 [Listeria monocytogenes LO28]
gi|284800586|ref|YP_003412451.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
gi|284993772|ref|YP_003415540.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
gi|16409652|emb|CAD00814.1| lmo0287 [Listeria monocytogenes EGD-e]
gi|47015250|gb|EAL06188.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|258601154|gb|EEW14479.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|258610502|gb|EEW23110.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|284056148|gb|ADB67089.1| hypothetical protein LM5578_0333 [Listeria monocytogenes 08-5578]
gi|284059239|gb|ADB70178.1| hypothetical protein LM5923_0332 [Listeria monocytogenes 08-5923]
gi|293591535|gb|EFF99869.1| DNA-binding response regulator [Listeria monocytogenes J2818]
Length = 237
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|296271227|ref|YP_003653859.1| winged helix family two component transcriptional regulator
[Thermobispora bispora DSM 43833]
gi|296094014|gb|ADG89966.1| two component transcriptional regulator, winged helix family
[Thermobispora bispora DSM 43833]
Length = 234
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ L +L AG+EV + + G A + L++ D+++P+MDG E
Sbjct: 9 RLLVVEDEPNILELLSASLRYAGFEVTTASTGTEAVAAAQRRRPDLIVLDVMLPDMDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+++T A ++KPF L +++ + +L
Sbjct: 69 IVRRLRGCGSQTPVVYLTARDATEDKVRGLTLGGDDYVTKPFSLDEVIARIRAVLRR 125
>gi|18310907|ref|NP_562841.1| DNA-binding response regulator [Clostridium perfringens str. 13]
gi|18145589|dbj|BAB81631.1| two-component response regulator [Clostridium perfringens str. 13]
Length = 265
Score = 159 bits (405), Expect = 9e-38, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ ED+ +R + K G+ V+ ++G A E L + DI+MP++D
Sbjct: 43 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 102
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E+ + ++ +T + ++KPF + L+ + LL
Sbjct: 103 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR 161
>gi|170760192|ref|YP_001788883.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169407181|gb|ACA55592.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 228
Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L +GY+ C NG A + E L+L DI++P +DG++
Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + ++ +T + + KPF ++L+ V +L N
Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124
>gi|166365570|ref|YP_001657843.1| two-component response regulator [Microcystis aeruginosa NIES-843]
gi|166087943|dbj|BAG02651.1| two-component response regulator [Microcystis aeruginosa NIES-843]
Length = 226
Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ L + L + GYEV +NG + + +E + LL+ D ++P+ G++
Sbjct: 2 KILIVDDEKELTEPLEQILAQEGYEVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQYLRNQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118
>gi|260587419|ref|ZP_05853332.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|331083699|ref|ZP_08332810.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542286|gb|EEX22855.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|330403910|gb|EGG83462.1| hypothetical protein HMPREF0992_01734 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 234
Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ N+G +A + +L+L D+++P MDG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFDTHIVNDGEAALNAFSSFAPNLILLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREIRQK-SNVPIIMLSAKGEIFDKVLGLELGADDYIIKPFDSKELVARVKAVLRR 121
>gi|121595458|ref|YP_987354.1| osmolarity response regulator [Acidovorax sp. JS42]
gi|222111672|ref|YP_002553936.1| osmolarity response regulator [Acidovorax ebreus TPSY]
gi|120607538|gb|ABM43278.1| two component transcriptional regulator, winged helix family
[Acidovorax sp. JS42]
gi|221731116|gb|ACM33936.1| two component transcriptional regulator, winged helix family
[Acidovorax ebreus TPSY]
Length = 243
Score = 159 bits (405), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+EV+ +G + + E L++ D++MP DG+
Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|168484408|ref|ZP_02709360.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1873-00]
gi|172042368|gb|EDT50414.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1873-00]
gi|332198688|gb|EGJ12770.1| response regulator [Streptococcus pneumoniae GA47368]
Length = 235
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GIEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|256827579|ref|YP_003151538.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
gi|256583722|gb|ACU94856.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
Length = 236
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G
Sbjct: 5 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D+ ++ +T V L KPF R+LV V LL
Sbjct: 65 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 122
>gi|187777475|ref|ZP_02993948.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
15579]
gi|187774403|gb|EDU38205.1| hypothetical protein CLOSPO_01043 [Clostridium sporogenes ATCC
15579]
Length = 228
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L +GY+ C +G A + E L+L DI++P +DG++
Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYDGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + ++ +T + + KPF ++L+ V +L N
Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124
>gi|148381483|ref|YP_001256024.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153931315|ref|YP_001385858.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153937839|ref|YP_001389265.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|153940381|ref|YP_001392897.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|168181012|ref|ZP_02615676.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|168183623|ref|ZP_02618287.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|170755568|ref|YP_001783183.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|226950999|ref|YP_002806090.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|237797004|ref|YP_002864556.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|148290967|emb|CAL85103.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152927359|gb|ABS32859.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152933753|gb|ABS39252.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|152936277|gb|ABS41775.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|169120780|gb|ACA44616.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|182668045|gb|EDT80024.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182673177|gb|EDT85138.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226841937|gb|ACO84603.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|229261601|gb|ACQ52634.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|295320874|gb|ADG01252.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
gi|322807868|emb|CBZ05443.1| response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Clostridium botulinum H04402 065]
Length = 228
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L +GY+ C NG A + E L+L DI++P +DG++
Sbjct: 7 KVLVVDDDENIAEVIKMYLENSGYDTRVCYNGKEAQEGFLEYKPDLVLLDIMLPHIDGVD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + ++ +T + + KPF ++L+ V +L N
Sbjct: 67 VLKWIRK-DSTIPIIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRRYN 124
>gi|320095862|ref|ZP_08027495.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977208|gb|EFW08918.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 226
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L GY V +C +GA A +E L+L D+++P MD
Sbjct: 1 MSSRILVVDDDVALAEMIGIVLEGEGYTVSTCPDGAKAVAAFQEHHPDLVLLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ ++ +T + A + KPF R+LV V L
Sbjct: 61 GFEVCAALRAE-SNVPIVMLTARSDTADVVTGLEAGADDYVPKPFKPRELVARVRARLRG 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|302871747|ref|YP_003840383.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302574606|gb|ADL42397.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 223
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + L K G+EVV +NG + E L++ DI++P+ DG E
Sbjct: 2 KILVIDDDIKICEVIKLYLEKEGFEVVVTHNGMDGISVFKNEMPDLVILDIMLPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ +T + KPF ++L+ + +L
Sbjct: 62 VCRELRKI-SNIPIIMLTAKGETFDKVLGLELGADDYIVKPFDPKELIARIKAVLRR 117
>gi|303232491|ref|ZP_07319179.1| putative Sensory transduction protein regX3 [Atopobium vaginae
PB189-T1-4]
gi|302481415|gb|EFL44487.1| putative Sensory transduction protein regX3 [Atopobium vaginae
PB189-T1-4]
Length = 240
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ +R + L + GY V +G +A ++ + F L++ D+++P++ G
Sbjct: 6 KRILLVEDEKTIREAVSAYLEREGYFVRGVGDGQNALEEFEKHSFDLIILDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E ++ ++ +T V L KPF R+LV V LL +
Sbjct: 66 RVCRAVRE-TSNVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALLRRAH 124
>gi|225728859|ref|YP_002735123.1| response regulator protein [Streptococcus uberis 0140J]
gi|222113533|emb|CAR41322.1| response regulator protein [Streptococcus uberis 0140J]
Length = 236
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++V+ +G A EE L++ D+++PEMDG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGKEAVLAFEEEKPDLVILDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|170760425|ref|YP_001786436.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169407414|gb|ACA55825.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 233
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K GYEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKEFFKILVVDDEERILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 IFGEEVCSKIRE-FSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|23100907|ref|NP_694374.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
gi|22779141|dbj|BAC15408.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
Length = 233
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ + L L K GY+VV N+G +A + E +L+L DI++P D
Sbjct: 1 MSQKILVVDDEQPIADILQFNLEKEGYQVVVANDGDTAIELAESEKPNLILLDIMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ V+ +T A ++KPF R+L+ V L
Sbjct: 61 GNEVLREVRK-TQNIPVIMLTAKDAEIDKVLGLELGADDYVTKPFSNRELIARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 E 120
>gi|172059033|ref|YP_001815493.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171991554|gb|ACB62476.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 236
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++ IL+ +D+ + L L K GY V N+G A +KV E L+L DI++P M
Sbjct: 1 MTERKILVVDDEQPIADILKFKLEKEGYSVAVANDGVEALEKVEEFNPDLILLDIMLPLM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R + + ++ +T + ++KPF R+L+ V L
Sbjct: 61 DGMEVCREVRK-TSKVPIIMLTAKDSEIDTVLGLELGANDYVTKPFSSRELLARVKAHLR 119
>gi|318040600|ref|ZP_07972556.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 253
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ +G A + R L++ D++MP++DG
Sbjct: 13 KETILVVDDEASIRRILETRLSMIGYQVVTACDGQEALEAFRRTDPDLVVLDVMMPKLDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 73 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 130
>gi|3236110|emb|CAA04532.1| arcA [Lactococcus lactis]
Length = 233
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G+EV + +G A + +E L+L D+++P++DG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++AR + D ++ ++ + ++KPF R+L+ + L
Sbjct: 62 DVAREIRK-TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118
>gi|332977343|gb|EGK14128.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 241
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+D +RR L L + GY + +G +A K E + L+L D+++P MDG+
Sbjct: 8 ERILVVDDEDRIRRLLRMYLEREGYLIDEAEDGETALKKGLEIDYDLILLDLMLPGMDGV 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R V+ +T + + KPF R+LV+ V +L +
Sbjct: 68 DVCRELRNK-KATPVIMLTARGEETNRVEGFEAGTDDYVVKPFSPRELVHRVKAVLRRSS 126
>gi|257865288|ref|ZP_05644941.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257871616|ref|ZP_05651269.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257874888|ref|ZP_05654541.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|325571477|ref|ZP_08146977.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
gi|257799222|gb|EEV28274.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257805780|gb|EEV34602.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257809054|gb|EEV37874.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|325155953|gb|EGC68149.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
Length = 237
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+
Sbjct: 5 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEVDPDLILLDLMLPKMDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 65 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 121
>gi|253579598|ref|ZP_04856867.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849099|gb|EES77060.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 233
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E N+G A + L++ D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELIALYLTKECFETKIVNDGEEALREFASFRPDLIILDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ + KPF ++LV V +L
Sbjct: 64 YQVCREIR-HTSDVPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVRAVLRR 121
>gi|163847561|ref|YP_001635605.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525411|ref|YP_002569882.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163668850|gb|ABY35216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449290|gb|ACM53556.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 246
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ M F+ L G V + NG A +KVREE ++L DI+MP MDG E
Sbjct: 9 VLVVDDEPRMITFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDIMMPVMDGFEA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ +T + KPF R+LV+ + +L
Sbjct: 69 LRRIRS-FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELVSRIRAVLRR 123
>gi|282601102|ref|ZP_05980740.2| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
15176]
gi|282570663|gb|EFB76198.1| DNA-binding response regulator ResD [Subdoligranulum variabile DSM
15176]
Length = 271
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + + L AG+ +GA+A + + L++ DI+MP MDG+
Sbjct: 47 KILVVDDEPRIRDLIREHLQYAGFTCEEAGDGAAALSILTQGGIDLVILDIMMPFMDGMT 106
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R V+ +T + + KPF R+LV V +L
Sbjct: 107 CLREMRTRKIMTPVIMLTARSEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLAR 163
>gi|320160200|ref|YP_004173424.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319994053|dbj|BAJ62824.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 229
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D +R+ L + L + GY V++ +G SA R E L+L DI+MP MD
Sbjct: 1 MSKTILIVDDQSSVRQLLQEYLTEQGYRVLTTTDGQSALYIARHENPDLILLDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ + V+ IT + KPF +R+L + +L
Sbjct: 61 GYQFLRQFRQER-QTPVIIITAREEETDAVLGLDLGADDYIIKPFRMRELAARIRAILRR 119
>gi|311897404|dbj|BAJ29812.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 249
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 6/121 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ ++R L +L +G+ V S G A D V E L++ D+++P++DG +
Sbjct: 18 LVVDDEPNIRELLSASLRFSGFRVASAATGQEALDAVAAERPDLVVLDVMLPDLDGFTVV 77
Query: 66 RRATELDP------DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR + + V+F+T A ++KPF L +L+ + +L
Sbjct: 78 RRLRDQTQWPQSPEHVPVLFLTAKDGTGDKVQGLAVGADDYVTKPFSLEELIARIRAILR 137
Query: 120 I 120
Sbjct: 138 R 138
>gi|239828010|ref|YP_002950634.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239808303|gb|ACS25368.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 234
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + L L +AG+ V++ N+G A +KV E + ++ D+++P++D
Sbjct: 1 MCKKVLVVDDEQSIVTLLTYNLEQAGFTVLTANDGEEAIEKVAFEQPAFIILDLMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + ++ +T ++KPF R++V V +L
Sbjct: 61 GVEVCKQLRQQKVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|239916951|ref|YP_002956509.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|281414591|ref|ZP_06246333.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|239838158|gb|ACS29955.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
Length = 236
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG
Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+F+T ++KPF L ++V + +L
Sbjct: 69 VTRRLRSAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125
>gi|158340554|ref|YP_001521548.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158310795|gb|ABW32409.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 237
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +RR L L K GY+V + +G A D ++ L++ D++MP++DG +
Sbjct: 8 ILVVDDEASIRRVLSTRLSKIGYQVYTAADGVEALDVFYDQRPDLIILDVMMPKLDGYGV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T + V + KPF L++L + V +L
Sbjct: 68 CQAVRKA-SRVPIIMLTALSDVVDRITGLEMGADDYVVKPFSLKELESRVRSILRR 122
>gi|260904263|ref|ZP_05912585.1| two-component response regulator [Brevibacterium linens BL2]
Length = 251
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R L +L AG++VVS NGA A + LL+ D+++P+MDG
Sbjct: 12 TLLVVDDEPNIRELLSTSLRFAGFDVVSAANGAEALRLAEQTNPDLLVLDVMLPDMDGFT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ + V+F+T + ++KPF L ++V + +L
Sbjct: 72 VTRRLRQIGMNAPVVFLTARDDTSDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 128
>gi|289705441|ref|ZP_06501835.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
gi|289557826|gb|EFD51123.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
Length = 235
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + NG A D E L + D+++P+MDG
Sbjct: 9 RLLVVDDEPNIRELLSTSLRYAGFEVTAAANGREALDAAEEFQPDLAVLDVMLPDMDGFT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+F+T ++KPF L ++V + +L
Sbjct: 69 VTRRLRAAGRHFPVVFLTARDGTEDKITGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125
>gi|156744257|ref|YP_001434386.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156235585|gb|ABU60368.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 239
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ M F+ L G VVS +NG A +KVR+E ++L DI+MP MDG E
Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVVSASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ +T + KPF R+LV+ + +L
Sbjct: 69 LRRLRQA-SSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123
>gi|219848093|ref|YP_002462526.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219542352|gb|ACL24090.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 234
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R L AGY V+ G +E L++ D+++P MD
Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E D+ ++ +T + L+KPF R+LV V +L
Sbjct: 61 GMEITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|56963600|ref|YP_175331.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56909843|dbj|BAD64370.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 238
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D++ +RR L L + Y++ +NG A + + + L+L D++MP MDG
Sbjct: 4 KPTLLVVDDEERIRRLLRMYLEREEYQIEEASNGEEALELALAKEYDLILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ + + VM +T A + KPF R++V V LL
Sbjct: 64 VEMCQELRKK-KATPVMMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKALLRR 121
>gi|315037328|ref|YP_004030896.1| response regulator [Lactobacillus amylovorus GRL 1112]
gi|325955796|ref|YP_004286406.1| response regulator [Lactobacillus acidophilus 30SC]
gi|312275461|gb|ADQ58101.1| putative response regulator [Lactobacillus amylovorus GRL 1112]
gi|325332361|gb|ADZ06269.1| response regulator [Lactobacillus acidophilus 30SC]
gi|327182633|gb|AEA31080.1| response regulator [Lactobacillus amylovorus GRL 1118]
Length = 238
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVQKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|282854876|ref|ZP_06264210.1| response regulator receiver domain protein [Propionibacterium acnes
J139]
gi|282582022|gb|EFB87405.1| response regulator receiver domain protein [Propionibacterium acnes
J139]
gi|314924356|gb|EFS88187.1| response regulator receiver domain protein [Propionibacterium acnes
HL001PA1]
gi|314965881|gb|EFT09980.1| response regulator receiver domain protein [Propionibacterium acnes
HL082PA2]
gi|314981603|gb|EFT25696.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA3]
gi|315092243|gb|EFT64219.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA4]
gi|315094815|gb|EFT66791.1| response regulator receiver domain protein [Propionibacterium acnes
HL060PA1]
gi|315104709|gb|EFT76685.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA2]
gi|327328660|gb|EGE70420.1| DNA-binding response regulator TrcR [Propionibacterium acnes
HL103PA1]
Length = 232
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +R L ++L +GYEV S +G A + ++ D++MP +D
Sbjct: 1 MSMHILVVDDDRAVRESLARSLQYSGYEVDSVADGVEALAHLSGSHPDAVIMDVMMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 GLEATRMLRSNGNDVPILILTARDAVDDRVDGLDAGADDYMVKPFALDELLARLRA-LTR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|257870078|ref|ZP_05649731.1| transcriptional regulator [Enterococcus gallinarum EG2]
gi|257804242|gb|EEV33064.1| transcriptional regulator [Enterococcus gallinarum EG2]
Length = 234
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYEVYTAYDGEEALEKVAEIEPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|153813611|ref|ZP_01966279.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
gi|149830309|gb|EDM85402.1| hypothetical protein RUMOBE_04034 [Ruminococcus obeum ATCC 29174]
Length = 229
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + L + G EV +G A +K +E + ++L D+++P+MD
Sbjct: 1 MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKENKYDIILLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRR 119
>gi|254555220|ref|YP_003061637.1| response regulator [Lactobacillus plantarum JDM1]
gi|300769135|ref|ZP_07079024.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308179221|ref|YP_003923349.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|254044147|gb|ACT60940.1| response regulator [Lactobacillus plantarum JDM1]
gi|300493375|gb|EFK28554.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308044712|gb|ADN97255.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 235
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV +G A KV E L+L D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISDIMKFNLTKEGYEVHVAADGEEALQKVDEVHPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+AR+ + D+ ++ +T + ++KPF R+LV V L +
Sbjct: 62 EVARQVRKNY-DMPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQ 119
>gi|109897378|ref|YP_660633.1| two component transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|332307706|ref|YP_004435557.1| two component transcriptional regulator PhoB, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|109699659|gb|ABG39579.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
gi|332175035|gb|AEE24289.1| two component transcriptional regulator PhoB, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 229
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL ED+ +R L L ++GYE + + A +KV E L+L D ++P
Sbjct: 1 MAKRVLLVEDEAPIREMLKFVLEQSGYETIEAEDFDVALEKVVEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LA+R + D+ ++ +T ++KPF ++LV + ++
Sbjct: 61 GVQLAKRLKQHEFTRDIPIIMVTARGEEEDKVRGLDSGADDYVTKPFSPKELVARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|295697075|ref|YP_003590313.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
gi|295412677|gb|ADG07169.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
Length = 237
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + + L KAGY V + +G A KVRE L++ D+++P MDG+
Sbjct: 3 HVLIVDDEPAIVELVSWHLKKAGYAVDTAESGEEADRKVREGNVDLVVLDVMLPGMDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + V+F+T ++KPF R+LV+ V +L
Sbjct: 63 LCRSWRDDGIGIPVIFLTARDDEVDRVLGLDLGGDDYVTKPFLPRELVSRVKAVLRR 119
>gi|71907609|ref|YP_285196.1| osmolarity response regulator [Dechloromonas aromatica RCB]
gi|71847230|gb|AAZ46726.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Dechloromonas aromatica RCB]
Length = 243
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ +DD +R L++ LG+ G+EV + +G E + L++ D++MP DG+
Sbjct: 8 HHILVVDDDARLRDLLVRYLGEQGFEVKAAADGQQMDKLRSREHYHLIVLDLMMPGEDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 68 TICRRLRGQGDQTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIHAVLRRQ 126
>gi|229916170|ref|YP_002884816.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229467599|gb|ACQ69371.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 238
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ +RR L L + Y + NG A E + ++L D++MP+MDG+E
Sbjct: 6 KILVVDDEERIRRLLKMYLEREQYVIEEAVNGEEALALALENEYDVILLDLMMPKMDGVE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + KPF R++V V LL
Sbjct: 66 VCTELRK-TKATPVIMLTAKGEEIDRVQGFEVGADDYIVKPFSPREVVLRVKALLRR 121
>gi|81300262|ref|YP_400470.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|81169143|gb|ABB57483.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 244
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEVV+ +G A R L++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLAMIGYEVVTAADGEEALITFRNATPDLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 122
>gi|319938297|ref|ZP_08012694.1| two-component system response regulator [Coprobacillus sp. 29_1]
gi|319806590|gb|EFW03248.1| two-component system response regulator [Coprobacillus sp. 29_1]
Length = 224
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D++ +R + L K G+ V + G A + E L + DI+MP MD
Sbjct: 1 MKSKILVVDDEEHIRELIRFYLDKEGFSVREASGGEEALGILENEYIDLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L E D+ V+ +T + A + ++KPF +L+ V +L
Sbjct: 61 GFQLVEEMKE-FKDIPVIMLTAKSQSADKLRGFSLGIDDYVTKPFDPDELLARVKTILKR 119
>gi|242373983|ref|ZP_04819557.1| response regulator [Staphylococcus epidermidis M23864:W1]
gi|242348337|gb|EES39939.1| response regulator [Staphylococcus epidermidis M23864:W1]
Length = 236
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A KV +E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALQKVEDEQPELIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|257062785|ref|YP_003142457.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
gi|256790438|gb|ACV21108.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
Length = 240
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G
Sbjct: 8 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D+ ++ +T V L KPF R+LV V LL
Sbjct: 68 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 125
>gi|75762099|ref|ZP_00742004.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74490417|gb|EAO53728.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 275
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 54 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 113
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 114 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 170
>gi|229819337|ref|YP_002880863.1| two component transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229565250|gb|ACQ79101.1| two component transcriptional regulator, winged helix family
[Beutenbergia cavernae DSM 12333]
Length = 241
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++++ +D+ ++R L +L AG++VV+ ++G A + + E L++ D+++P+MDG
Sbjct: 13 RLVVVDDEPNIRDLLATSLRFAGFDVVTASDGTEALEAIVEGEPDLVVLDVMLPDMDGFT 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+F+T VA ++KPF L ++V + +L
Sbjct: 73 VTRRLRERGVRTPVVFLTARDDVADAVTGLTVGGDDYVTKPFSLEEVVARIRAVLRR 129
>gi|85710771|ref|ZP_01041832.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
gi|85695175|gb|EAQ33112.1| Response regulator (CheY, wHTH domains) [Idiomarina baltica OS145]
Length = 241
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V ++ + E + LL+ D+++P DG+
Sbjct: 7 KILVVDDDARLRSLLERYLNEQGFQVRVASDAEQMDRLLTRENYHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + + + V+ +T L+KPF+ R+L+ + +L +
Sbjct: 67 ICKRLRQTNNTIPVIMLTAKGDEVDRIIGLELGADDYLAKPFNPRELLARIRAVLRRR 124
>gi|317481983|ref|ZP_07941008.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|316916550|gb|EFV37947.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
Length = 296
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 63 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGID 121
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 122 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 180
>gi|328883961|emb|CCA57200.1| two-component system response regulator [Streptomyces venezuelae
ATCC 10712]
Length = 242
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L ++L GY +G A ++ L++ D+ MP MDG+
Sbjct: 9 ERILIVDDEPAVREALRRSLAFEGYGTQDAVDGVDALARMESYAPDLVVLDVQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + ++ +T V L KPF L +L + LL +
Sbjct: 69 TAARRIRASGSTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 128
>gi|304386239|ref|ZP_07368572.1| response regulator [Pediococcus acidilactici DSM 20284]
gi|304327596|gb|EFL94823.1| response regulator [Pediococcus acidilactici DSM 20284]
Length = 234
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 62/122 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L +A Y+V+S +NG A +V+ ++ D+++P++D
Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E ++ + + + ++ +T ++ L+KPF ++L++ + +L
Sbjct: 61 GVEATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120
Query: 121 KN 122
N
Sbjct: 121 TN 122
>gi|320332849|ref|YP_004169560.1| winged helix family two component transcriptional regulator
[Deinococcus maricopensis DSM 21211]
gi|319754138|gb|ADV65895.1| two component transcriptional regulator, winged helix family
[Deinococcus maricopensis DSM 21211]
Length = 227
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +R + + L + GY V +NG + R P L+L D++MP MDG+
Sbjct: 2 KTILVVEDNAGIREMVREYLAEHGYRVRVASNGVEGLLETRHHPPDLILLDVMMPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R+ D VMF+T A L+KPF + +L+ + LL
Sbjct: 62 EFLRKYRA-DAGTPVMFLTARDAELDKVLGLELGADDYLTKPFSMAELLARIRALLRR 118
>gi|42518151|ref|NP_964081.1| two-component regulatory system response regulator [Lactobacillus
johnsonii NCC 533]
gi|41582435|gb|AAS08047.1| two-component regulatory system response regulator [Lactobacillus
johnsonii NCC 533]
gi|329666463|gb|AEB92411.1| two-component system response regulator [Lactobacillus johnsonii
DPC 6026]
Length = 235
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|19552100|ref|NP_600102.1| two-component system, response regulator [Corynebacterium
glutamicum ATCC 13032]
gi|11526729|gb|AAG36759.1|AF119221_1 response regulator [Corynebacterium glutamicum]
gi|21323640|dbj|BAB98267.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
Length = 232
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG+E
Sbjct: 2 KILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L+KPF L +L+ V L+
Sbjct: 62 VCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 118
>gi|326201972|ref|ZP_08191842.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987767|gb|EGD48593.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 228
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + L K GYEV+ NG +A D + + SL++ DI++P +DG +
Sbjct: 6 KVLIVDDDRNICELIGLYLEKEGYEVLYAYNGLNAVDTFKIQTPSLVVLDIMLPGIDGWQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ + ++ +T + KPF ++LV V +L
Sbjct: 66 VCREIRKV-SSIPIIMLTAKGETFDKVLGLELGADDYMVKPFEPKELVARVKAVLRR 121
>gi|116670002|ref|YP_830935.1| two component transcriptional regulator [Arthrobacter sp. FB24]
gi|116610111|gb|ABK02835.1| two component transcriptional regulator, winged helix family
[Arthrobacter sp. FB24]
Length = 247
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++ILL ED+ + + L +AG++V +G +A E L+L D ++P +DG
Sbjct: 15 NRRILLVEDEQTIAGVVRDYLVQAGFQVDLAADGFTALRLAAERHPDLVLLDRMLPGLDG 74
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + V+ +T ++KPF R+LV V +L
Sbjct: 75 VEVCRRLRQTMS-VPVIMLTALGTEDDRILGLEVGADDYITKPFSPRELVLRVRSVLRR 132
>gi|13324642|gb|AAK18824.1|AF327739_1 response regulator Rr1 [Streptococcus thermophilus]
Length = 235
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EIVKEIRK-TSHTPIIMLSAKDSEFDKVVGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|255525674|ref|ZP_05392607.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296185432|ref|ZP_06853842.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255510660|gb|EET86967.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296050266|gb|EFG89690.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 231
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL+ +D++ + + L +GY+ + +NG A K + + +L+L DI++P M
Sbjct: 1 MSEEKILIVDDEEHITELIKFNLENSGYKTICADNGLDAIKKAKRDTPNLILLDIMLPGM 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + + ++ IT ++KPF +R+L+ V +
Sbjct: 61 DGYDVCKEIRKDNSISSTPIIMITAKGEEFDKVLGLELGADDYITKPFSIRELLARVKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|51894442|ref|YP_077133.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51858131|dbj|BAD42289.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 234
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ + L + + G+EV +G A K R F L++ DI++P++D
Sbjct: 1 MADRILVVDDERPIAEILKFSFEREGFEVEMAFDGEEAVAKARASDFDLVILDIMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T ++KPF R+L+ V +L
Sbjct: 61 GFTVCREIR-RFSTVPILMLTAKEDEVDKVLGLELGADDYVTKPFSPRELIARVRAILRR 119
>gi|134300813|ref|YP_001114309.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134053513|gb|ABO51484.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 229
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+D +R+ + L GY V +G A K + E + L++ D++MP+M
Sbjct: 1 MSRLRVLVVDDEDKIRQVIGIYLTNEGYYVEEALDGEEALRKFKAESWDLIVLDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + ++ + ++ +T + KPF R+LV + +L
Sbjct: 61 DGITVCQEIRKV-SKVPIIMLTAKNDEVDRILGLEFGADDYMGKPFSPRELVARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|302530364|ref|ZP_07282706.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302439259|gb|EFL11075.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 233
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD+ +R + + L AG+ V +G +A + E L++ D++MP ++G+E
Sbjct: 7 RVLVVDDDETVRDVVRRYLETAGFTVDLAGDGTAALAQFAERVPDLVVLDVMMPGLNGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + ++ +T ++KPF ++L V +L
Sbjct: 67 VCRRLRQ-TSQVPIVMLTALGEEENRIAGLQLGADDYVTKPFSPKELTLRVASVLRR 122
>gi|228955130|ref|ZP_04117144.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228804541|gb|EEM51146.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar kurstaki str. T03a001]
Length = 232
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|20807496|ref|NP_622667.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|20516025|gb|AAM24271.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
Length = 229
Score = 159 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + RFL GYEV +G S + E + L+L DI++P MD
Sbjct: 1 MKEKILIVEDERQIARFLQLEFEHEGYEVKIVYDGTSGVKEALEGDYDLVLLDIMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + D+ V+ +T V ++KPF + +L V L
Sbjct: 61 GYEVLKKIRE-NSDIPVIMLTAKYEVKDKVRGLDIGADDYVTKPFSIEELFARVRAALRK 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|169343589|ref|ZP_02864588.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|169298149|gb|EDS80239.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
Length = 269
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ ED+ +R + K G+ V+ ++G A E L + DI+MP++D
Sbjct: 47 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 106
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E+ + ++ +T + ++KPF + L+ + LL
Sbjct: 107 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR 165
>gi|145295044|ref|YP_001137865.1| hypothetical protein cgR_0988 [Corynebacterium glutamicum R]
gi|140844964|dbj|BAF53963.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 255
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D+ +R L ++L GY VV +G A + + +E +L++ D++MP MDG
Sbjct: 23 SMKILVVDDEQAVRDSLRRSLSFNGYNVVLAEDGIQALEMIDKEQPALVILDVMMPRMDG 82
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R D ++ +T V+ L+KPF L +L+ V L+
Sbjct: 83 LEVCRHLRSEGDDRPILILTARDNVSDRVGGLDAGADDYLAKPFALEELLARVRSLVRR 141
>gi|332981325|ref|YP_004462766.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332699003|gb|AEE95944.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 235
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ + + L AGY+V +G +A R++ L++ DI++P +DG
Sbjct: 3 NETILVVDDEAHILELIRFNLENAGYKVEVAEDGETALKFCRQQVPDLIILDIMLPGIDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + + ++ +T ++KPF +R+L+ V LL
Sbjct: 63 LEVCKTLRASVATAKVPIIMLTAKGEEIDKVVGLEIGADDYIAKPFGIRELIARVKALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|332530194|ref|ZP_08406142.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
gi|332040386|gb|EGI76764.1| osmolarity response regulator [Hylemonella gracilis ATCC 19624]
Length = 244
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+EV +G + + E L++ D++MP DG+
Sbjct: 11 KILVVDDDARIRDLLRRYLTQEGFEVFLAEDGKALTRILLRESVDLIVLDLMMPGEDGLS 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ +N +L +
Sbjct: 71 ICRRLRAANDRTPIIMLTAKVEDVDRIVGLEVGADDYLGKPFNPRELLARINAVLRRR 128
>gi|323496468|ref|ZP_08101526.1| putative two-component response regulator [Vibrio sinaloensis DSM
21326]
gi|323318745|gb|EGA71698.1| putative two-component response regulator [Vibrio sinaloensis DSM
21326]
Length = 235
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LG+AG+EV+ NG + + ++ L++ DI+MP DG
Sbjct: 3 NKRILVVDDNQELREALSDYLGRAGFEVLGAENGRAMWQTLQHTTPDLIILDIMMPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + D + ++ +T A ++K F R+L+ + +L
Sbjct: 63 FCLCRQLRQ-DSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|297616557|ref|YP_003701716.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
gi|297144394|gb|ADI01151.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
Length = 233
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD + L L + GYE +G A+ K++ + ++L D+++P D
Sbjct: 1 MKARILVVEDDHALVSLLTHNLEREGYETGVAMDGDEAWRKIQSGEWDVILLDVMLPHRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + V+ +T ++KPF +R+L+ + +L
Sbjct: 61 GLEICRQLRQEKNYTPVIMLTARDDEIDRVVGLEIGADDYVTKPFSVRELMARIKVILRR 120
Query: 121 KN 122
+N
Sbjct: 121 RN 122
>gi|296332246|ref|ZP_06874708.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674948|ref|YP_003866620.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296150560|gb|EFG91447.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413192|gb|ADM38311.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 240
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + NG A K E + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQVREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|219848942|ref|YP_002463375.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219543201|gb|ACL24939.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 247
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ M F+ L G V + NG A +KVREE ++L D++MP MDG E
Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ +T + KPF R+L++ + +L
Sbjct: 69 LRRIRS-FSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRR 123
>gi|309789569|ref|ZP_07684150.1| response regulator receiver [Oscillochloris trichoides DG6]
gi|308228305|gb|EFO81952.1| response regulator receiver [Oscillochloris trichoides DG6]
Length = 229
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D ++R L L + G+ V++ +GA A E L+L D++MP++D
Sbjct: 2 MAKTILVVDDHANVRALLKDYLSEHGFRVITAADGAEALAVAGREQPDLILLDVMMPKLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + V+ +T A + ++KPF + +LV V +L
Sbjct: 62 GFQFMQTFRKRH-NTPVIMLTARIAESDKVVGLELGADDYVTKPFGMHELVARVRAVLRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|33591409|ref|NP_879053.1| phosphate regulon transcriptional regulatory protein [Bordetella
pertussis Tohama I]
gi|33603443|ref|NP_891003.1| phosphate regulon transcriptional regulatory protein [Bordetella
bronchiseptica RB50]
gi|33571051|emb|CAE40539.1| phosphate regulon transcriptional regulatory protein [Bordetella
pertussis Tohama I]
gi|33577567|emb|CAE34832.1| phosphate regulon transcriptional regulatory protein [Bordetella
bronchiseptica RB50]
gi|332380810|gb|AEE65657.1| phosphate regulon transcriptional regulatory protein [Bordetella
pertussis CS]
Length = 232
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGAS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR+ E + V+ +T A D ++KPF ++L+ + +L
Sbjct: 61 GLSLARKLRDEERTRAVPVIMLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|331700440|ref|YP_004397399.1| winged helix family two component transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329127783|gb|AEB72336.1| two component transcriptional regulator, winged helix family
[Lactobacillus buchneri NRRL B-30929]
Length = 238
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + L K GYEV +G A +V++ L++ D+++P++D
Sbjct: 1 MAKKILVVDDEKPIVDIEKFNLTKEGYEVSVAYDGEEALQQVKDVDPDLIILDLMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAREVRK-TKDTPIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|291550846|emb|CBL27108.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 229
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + + + +L + G EV +G A + R + L+L D+++P++D
Sbjct: 1 MSKKILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYARRCEYDLVLLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E D+ ++ +T + ++KPF++ ++ + ++
Sbjct: 61 GFQVCQQIRE-FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|313890279|ref|ZP_07823913.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pseudoporcinus SPIN 20026]
gi|313121384|gb|EFR44489.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pseudoporcinus SPIN 20026]
Length = 236
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++++ +G A E L++ D+++PEMDG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAIAAFEEGKPDLVILDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|90413136|ref|ZP_01221132.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum 3TCK]
gi|90325827|gb|EAS42279.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum 3TCK]
Length = 1117
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L L GY V++ ++G A + ++ +L+L DI+MPEM G E+
Sbjct: 712 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 771
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E +L ++ ++ V L+KPF+ +L+ ++ L
Sbjct: 772 HILREEHSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 826
>gi|299541796|ref|ZP_07052119.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
gi|298725534|gb|EFI66175.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
Length = 237
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ + L L K GY+V+ +G A KV EE L+L DI++P+ D
Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKKVEEEQPDLMLLDIMLPKRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D ++ +T + ++KPF R+L+ V +
Sbjct: 61 GMEVCREVRKKY-DFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRR 119
>gi|295110582|emb|CBL24535.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 229
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + L + G EV +G A +K + + ++L D+++P+MD
Sbjct: 1 MSRKVLVVDDEKLIVKGIRFNLEQDGMEVDCAYDGEEAVEKAKANKYDIILLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSNVPIVMLTAKGEDMDKILGLDYGADDYITKPFNILEVKARIKAIMRR 119
>gi|212638880|ref|YP_002315400.1| transcriptional regulator of redox response ResD (REC-wHTH)
[Anoxybacillus flavithermus WK1]
gi|212560360|gb|ACJ33415.1| Transcriptional regulator of redox response ResD (REC-wHTH)
[Anoxybacillus flavithermus WK1]
Length = 244
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ +RR L L + Y + NG A E + L+L D+++P
Sbjct: 7 MEKEVKILVVDDEERIRRLLRMYLEREQYVIDEAENGEEALALALENDYDLILLDLMLPG 66
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ ++ E V+ +T A + KPF R++V V LL
Sbjct: 67 KDGIEVCKQLREK-KATPVIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALL 125
Query: 119 TI 120
Sbjct: 126 RR 127
>gi|157376435|ref|YP_001475035.1| two component transcriptional regulator [Shewanella sediminis
HAW-EB3]
gi|157318809|gb|ABV37907.1| two component transcriptional regulator, winged helix family
[Shewanella sediminis HAW-EB3]
Length = 229
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + G+ + + SA + + E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDFDSALEMLSEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + ++
Sbjct: 61 GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSS 124
>gi|229916394|ref|YP_002885040.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229467823|gb|ACQ69595.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 233
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+++ +D+ + L L +AG+EV + ++G + + ++ L++ D+++PEMD
Sbjct: 1 MADKVIVVDDEVSIATLLKFNLEQAGFEVETAHDGKTGLELAEKKDAVLIVLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + + ++ +T L+KPF R++V V +L
Sbjct: 61 GLEVCKRLRQQKVNTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRR 120
>gi|116492234|ref|YP_803969.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
gi|116102384|gb|ABJ67527.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Pediococcus pentosaceus ATCC 25745]
Length = 234
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + + L +A Y+VVS +NG A + V++ ++ D+++P++D
Sbjct: 1 MSKTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ + D + ++ +T + ++KPF ++L++ + +L
Sbjct: 61 GIEATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRR 120
>gi|240146374|ref|ZP_04744975.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
gi|257201483|gb|EEU99767.1| DNA-binding response regulator YycF [Roseburia intestinalis L1-82]
gi|291535777|emb|CBL08889.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
Length = 230
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A E + ++L DI++P+MD
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQHIRE-FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|116669349|ref|YP_830282.1| two component transcriptional regulator [Arthrobacter sp. FB24]
gi|116609458|gb|ABK02182.1| two component transcriptional regulator, winged helix family
[Arthrobacter sp. FB24]
Length = 239
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M + K+L+ +D+ ++R L +L AG+EVVS NG A L + D++
Sbjct: 4 MKKNGPEAKLLVVDDEPNIRELLSTSLRFAGFEVVSAGNGRDALAAAELHAPDLAVLDVM 63
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P+MDG + RR V+F+T ++KPF L ++V +
Sbjct: 64 LPDMDGFTVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIR 123
Query: 116 RLLTI 120
+L
Sbjct: 124 AVLRR 128
>gi|260584310|ref|ZP_05852057.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
700633]
gi|260157828|gb|EEW92897.1| DNA-binding response regulator VicR [Granulicatella elegans ATCC
700633]
Length = 238
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + +L K G+EVV+ +G E L++ D+++P+++G+
Sbjct: 2 KKILVVDDEKPISDIVKFSLSKEGFEVVTAFDGEEGLAVFSAENPDLVILDLMLPKIEGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + ++ ++ +T + ++KPF R+L+ V L ++
Sbjct: 62 EVCREIRK-TSNVPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRQH 120
>gi|169833990|ref|YP_001695445.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pneumoniae Hungary19A-6]
gi|168996492|gb|ACA37104.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Hungary19A-6]
Length = 235
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILKLLYYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|82502198|gb|ABB80126.1| SubR [Bacillus subtilis]
Length = 238
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L L + YEV +G A + + L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + +++ + +L
Sbjct: 65 VCRRMRNHT-NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120
>gi|315639590|ref|ZP_07894730.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus italicus DSM 15952]
gi|315484551|gb|EFU75007.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus italicus DSM 15952]
Length = 235
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+V S +G A + + F +L D+++P MDGI
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVTSATDGQEALEIALMQSFDFILLDVMLPHMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + ++ ++ +T LSKPF R+++ + +
Sbjct: 62 EITKRLRQEKVNIPIIILTAKDDPIDRILGLEIGADDYLSKPFSPREVIARIKAIARR 119
>gi|289643612|ref|ZP_06475726.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289506561|gb|EFD27546.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 247
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L ++L GYEV S +GA A D V + +++ D++MP +DG+E
Sbjct: 2 RVLVVDDEPAVRESLERSLRFEGYEVSSAQDGAEALDAVTRDRPDIVVLDVMMPRVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR DL V+ +T +A L KPF L +L + L
Sbjct: 62 ACRRLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEELFARLRAL 115
>gi|239988860|ref|ZP_04709524.1| putative two-component systen response regulator [Streptomyces
roseosporus NRRL 11379]
Length = 246
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 48/118 (40%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+
Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L + LL
Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126
>gi|289578661|ref|YP_003477288.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|297544881|ref|YP_003677183.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|289528374|gb|ADD02726.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|296842656|gb|ADH61172.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 234
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ + L L AGY+V++ NG DK EE L++ D+++P++D
Sbjct: 1 MAHRVLVIEDEVHILELLRYNLEAAGYKVITSENGKEGLDKALEEKPDLVILDLMLPDVD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + + D ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|168182895|ref|ZP_02617559.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237794337|ref|YP_002861889.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182673952|gb|EDT85913.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229263491|gb|ACQ54524.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 233
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D+ + + L K GYEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKKLFKILVVDDEVRILDVVKAYLEKEGYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEEKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|218289584|ref|ZP_03493804.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|218240234|gb|EED07417.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
Length = 233
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q +IL+ +D++ +RR + L + G+EV +G A +K + ++L++ D+++P M
Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALNKALNQAYALIILDLMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ + + ++ +M +T A + KPF R+LV V +L
Sbjct: 61 DGRDVCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|332711034|ref|ZP_08430969.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
gi|332350160|gb|EGJ29765.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
Length = 224
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + +F+ L GYEV +G + RE L++ D ++P +
Sbjct: 1 MTHHILVVEDETKLAQFIELELKYEGYEVSVAYDGLAGLGAARESNPDLVILDWMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + ++ +T V+ + KPF + +L+ V L
Sbjct: 61 GPEICRRLRTTGNQVPIILLTAKDEVSDRVSGLDAGADDYVVKPFSVEELLARVRAHLRR 120
>gi|332523540|ref|ZP_08399792.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus porcinus str. Jelinkova 176]
gi|332314804|gb|EGJ27789.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus porcinus str. Jelinkova 176]
Length = 236
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + R L L K GYE +G +A E + +L DI++P++D
Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLSKEGYETELVEDGRTALKLAESEHYDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + ++KPF R+LV + +L
Sbjct: 61 GIEVCKRIRAKGIQTPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELVARLKAILRR 120
>gi|224477938|ref|YP_002635544.1| putative response regulator [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422545|emb|CAL29359.1| putative response regulator [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 233
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAIDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|319762025|ref|YP_004125962.1| response regulator receiver [Alicycliphilus denitrificans BC]
gi|330826156|ref|YP_004389459.1| winged helix family two component transcriptional regulator
[Alicycliphilus denitrificans K601]
gi|317116586|gb|ADU99074.1| response regulator receiver [Alicycliphilus denitrificans BC]
gi|329311528|gb|AEB85943.1| two component transcriptional regulator, winged helix family
[Alicycliphilus denitrificans K601]
Length = 243
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+EV+ +G + + E L++ D++MP DG+
Sbjct: 10 KVLVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRAASDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|255526544|ref|ZP_05393453.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296187650|ref|ZP_06856044.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255509794|gb|EET86125.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296047607|gb|EFG87047.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 231
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KIL+ +D+ ++ + L K G++VV+ NG A +EE L++ D+++P
Sbjct: 1 MNDIKKILVVDDEPNIVEVVEAYLRKEGFQVVTAENGEKALRLFKEEVIHLVILDLMLPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + + D+ ++ +T + A L+KPF +R+LV V L+
Sbjct: 61 ISGEEICNKIRAV-SDVPIIMLTAKSEEEDKISGLAIGADDYLTKPFSVRELVGRVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|15672379|ref|NP_266553.1| two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|116511254|ref|YP_808470.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
SK11]
gi|125623281|ref|YP_001031764.1| two-component system regulator [Lactococcus lactis subsp. cremoris
MG1363]
gi|281490939|ref|YP_003352919.1| Two-component response regulator [Lactococcus lactis subsp. lactis
KF147]
gi|12483717|gb|AAG53732.1|AF178425_2 RrC [Lactococcus lactis subsp. cremoris MG1363]
gi|12723270|gb|AAK04495.1|AE006276_10 two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|116106908|gb|ABJ72048.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactococcus lactis subsp. cremoris SK11]
gi|124492089|emb|CAL97018.1| two-component system regulator [Lactococcus lactis subsp. cremoris
MG1363]
gi|281374697|gb|ADA64217.1| Two-component response regulator [Lactococcus lactis subsp. lactis
KF147]
gi|300070032|gb|ADJ59432.1| Two-component response regulator [Lactococcus lactis subsp.
cremoris NZ9000]
gi|326405973|gb|ADZ63044.1| Two-component response regulator [Lactococcus lactis subsp. lactis
CV56]
Length = 233
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G+EV + +G A + +E L+L D+++P++DG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGFEVFTAFDGEEALEAFKEVQPDLILLDLMLPKLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++AR + D ++ ++ + ++KPF R+L+ + L
Sbjct: 62 DVAREIRK-TSDTPIIMVSAKDSEFDKVIGLELGADDYVTKPFSNRELLARIKANLRR 118
>gi|317122420|ref|YP_004102423.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
gi|315592400|gb|ADU51696.1| two component transcriptional regulator, winged helix family
[Thermaerobacter marianensis DSM 12885]
Length = 235
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ MR L L + G+ V +G A ++VR E L+L DI++P +DG
Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+ +T V L KPF +L+ + +L
Sbjct: 62 VCRILRRE-SDVPVIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117
>gi|242372585|ref|ZP_04818159.1| response regulator [Staphylococcus epidermidis M23864:W1]
gi|242349802|gb|EES41403.1| response regulator [Staphylococcus epidermidis M23864:W1]
Length = 280
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 48 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 107
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 108 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 166
>gi|220903843|ref|YP_002479155.1| winged helix family two component transcriptional regulator
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219868142|gb|ACL48477.1| two component transcriptional regulator, winged helix family
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
Length = 225
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q+IL+ ED+ D+R L L + G+ V+ +G A R+ L+L D++MP D
Sbjct: 1 MSQQILIVEDEADIRELLRFNLEREGFSVLEAADGNEALRLARQHLPDLMLLDVMMPGPD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + + KPF +R+L+ + +L
Sbjct: 61 GFEICRLLGAQAETAHIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|72160661|ref|YP_288318.1| response regulator receiver [Thermobifida fusca YX]
gi|71914393|gb|AAZ54295.1| response regulator receiver [Thermobifida fusca YX]
Length = 241
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R + AL G+EV + +G R E L+L D+++P++ G +
Sbjct: 11 HVLVIDDEPNIRDLVQAALRFHGFEVSTAGSGEEGLALARSERPDLILLDVLLPDISGFD 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D D+ V+++T + + ++KPF + L+ V LL
Sbjct: 71 VCRRLRDEDDDVPVIYLTARDTPSDTVTGLSLGGDDYVTKPFSVEALIARVRALLRR 127
>gi|270290714|ref|ZP_06196938.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Pediococcus acidilactici 7_4]
gi|270280774|gb|EFA26608.1| two-component system, OmpR family, alkaline phosphatase synthesis
response regulator PhoP [Pediococcus acidilactici 7_4]
Length = 234
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 62/122 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L +A Y+V+S +NG A +V+ ++ D+++P++D
Sbjct: 1 MAMTILVVDDEPAIVTLLTYNLKQANYQVISVDNGVDAVKEVQRGRVDFVIMDLMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E ++ + + + ++ +T ++ L+KPF ++L++ + +L
Sbjct: 61 GVEATKQIRKFNEQIPIIMLTAKSSEVDKILGLELGADDYLTKPFSPQELISRIKAILRR 120
Query: 121 KN 122
N
Sbjct: 121 TN 122
>gi|260892897|ref|YP_003238994.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
gi|260865038|gb|ACX52144.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
Length = 231
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++ +++ L L K G++V+ +G A + R+ +++ D+++P +DG +
Sbjct: 4 VLVVDDEEHIQKLLHFTLSKEGFQVLVAADGPQALEMARQHRPDVIILDLMLPALDGFTV 63
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ V+ ++ ++KPF R+L V L +
Sbjct: 64 CELLRRDPSLKEIPVIVLSARGTEEDKVRGLDIGADDYVTKPFSPRELAARVKAQLRRR 122
>gi|254414181|ref|ZP_05027948.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196178856|gb|EDX73853.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 227
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + +F+ L GY+V +G + RE LL+ D ++P +
Sbjct: 1 MTHHILVVEDEAKLAKFIELELQYEGYQVSVAPDGFAGLATARESQPDLLILDWMLPGVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T V+ + KPF L +L+ V L
Sbjct: 61 GLEICRRLRSTGDKVPIILLTAKDEVSDRVAGLDAGADDYVVKPFSLEELLARVRAHLRR 120
>gi|148654376|ref|YP_001274581.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148566486|gb|ABQ88631.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 243
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ M F+ L G V+S +NG A +KVR+E ++L DI+MP MDG E
Sbjct: 9 ILVVDDEPRMVNFMRMNLELEGCRVISASNGREALEKVRDEMPDVVLLDIMMPVMDGFET 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ +T + KPF R+LV+ + +L
Sbjct: 69 LRRLRQA-SSVPVLVLTAKDDEEDRIKGLELGADDYIGKPFSHRELVSRIRAVLRR 123
>gi|291551175|emb|CBL27437.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 230
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED++ + L +G+EV N+G K E F L++ D+++P +D
Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGEIGLKKGLEGEFDLIILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ ++KPF +LV V L
Sbjct: 61 GFEICRQIRSQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 119
>gi|227876375|ref|ZP_03994487.1| response regulator [Mobiluncus mulieris ATCC 35243]
gi|306817267|ref|ZP_07451013.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|227842916|gb|EEJ53113.1| response regulator [Mobiluncus mulieris ATCC 35243]
gi|304649947|gb|EFM47226.1| response regulator [Mobiluncus mulieris ATCC 35239]
Length = 241
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AGYEV S +G A E L++ D+++P+MDG
Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYEVFSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D+ ++F+T + + ++KPF L ++V +N +L
Sbjct: 71 VTRKLRAAGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127
>gi|172040160|ref|YP_001799874.1| two-component system response regulator MtrA [Corynebacterium
urealyticum DSM 7109]
gi|171851464|emb|CAQ04440.1| two-component system response regulator MtrA [Corynebacterium
urealyticum DSM 7109]
Length = 226
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G++ V +G A +E L+L D+++P M
Sbjct: 1 MTPKILVVDDDPAISEMLTIVLQTEGFDTVVVGDGNDAVTAAQEHDPDLILLDVMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R E + ++ +T ++KPF ++L+ V L
Sbjct: 61 GIDVCRTVRE-FSTVPIVMLTARTDTVDVVLGLESGADDYITKPFKPKELIARVRARLRR 119
>gi|4455703|emb|CAB36688.1| putative two-component response regulator [Mycobacterium leprae]
Length = 253
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +DD +R L ++L GY V N+G A + V + L+ D++MP +DG+E
Sbjct: 27 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 86
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 87 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 143
>gi|300854423|ref|YP_003779407.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300434538|gb|ADK14305.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 231
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L K GY+ + NG A V+EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLEKNGYKTIVAGNGIDALKIVKEEMPQLILLDVMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + V+ IT ++KPF +R+LV V +L
Sbjct: 64 DVCKEIRRDNAISFIPVIMITARGEEFDKVLGLELGADDYMTKPFSIRELVARVKAVLRR 123
>gi|295106557|emb|CBL04100.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Gordonibacter pamelaeae
7-10-1-b]
Length = 231
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + F+ AL K G+ +NG A + P+ L + DI++P MDG E
Sbjct: 7 RILVVDDEPSITEFVSYALKKEGFYTDVVDNGEEALALATKNPYDLFVLDIMLPGMDGYE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+F++ L+KPF +R+L+ V LL
Sbjct: 67 LCRRLRSKT-TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122
>gi|57235029|ref|YP_180885.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
gi|57225477|gb|AAW40534.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
Length = 230
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD +R L L K GY++ +G A R SL++ D+++P MDG
Sbjct: 4 HKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALGMYRRFKPSLVILDVMLPGMDGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + ++ +T ++ + LSKPF +++L+ + LL
Sbjct: 64 ELCRLIRAE-SSVPILMLTARSSETDKVNGLEVGADDYLSKPFGMKELLARMRALLRR 120
>gi|262275912|ref|ZP_06053721.1| putative DNA-binding response regulator [Grimontia hollisae CIP
101886]
gi|262219720|gb|EEY71036.1| putative DNA-binding response regulator [Grimontia hollisae CIP
101886]
Length = 240
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD ++R L + L KAGY V + NG K+ + L+L DI++P DG
Sbjct: 5 KRILVVDDDLEIRELLQEYLSKAGYNVTTAQNGQEMKAKLAVQYPDLILLDIMLPGDDGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D + ++ +T + ++KPF R LV + LL
Sbjct: 65 TLCKYVRQ-DSSVPIIMLTAVSDETDQIIGLELGADDYIAKPFSPRQLVARIRALLRR 121
>gi|90961025|ref|YP_534941.1| two-component response regulator [Lactobacillus salivarius UCC118]
gi|227891713|ref|ZP_04009518.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|301299933|ref|ZP_07206164.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90820219|gb|ABD98858.1| Two-component response regulator [Lactobacillus salivarius UCC118]
gi|227866516|gb|EEJ73937.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|300213968|gb|ADJ78384.1| Two-component response regulator [Lactobacillus salivarius CECT
5713]
gi|300852478|gb|EFK80131.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 236
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+V + +G A +V+E L+L D+++P++DG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYDVYTAYDGEEALQQVKEVEPDLILLDLMLPKIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+AR + D+ ++ +T + ++KPF R+LV V L ++
Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRQS 120
>gi|55823082|ref|YP_141523.1| response regulator [Streptococcus thermophilus CNRZ1066]
gi|55739067|gb|AAV62708.1| response regulator (homolog to RR02/MicA Spn & RR02 Sth &VicR Spy)
[Streptococcus thermophilus CNRZ1066]
Length = 235
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEVV+ +G A ++ + L++ D+++PE+DG+
Sbjct: 2 KKILVVDDERPISDIIKFNLTKEGYEVVTAFDGREALEQFEAKKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EIVKEIRK-TSHTPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|229175570|ref|ZP_04303080.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
gi|228607966|gb|EEK65278.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
Length = 232
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|54307731|ref|YP_128751.1| sensory box sensor histidine kinase/response regulator
[Photobacterium profundum SS9]
gi|46912154|emb|CAG18949.1| hypothetical sensory box sensor histidine kinase/response regulator
[Photobacterium profundum SS9]
Length = 1131
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L L GY V++ ++G A + ++ +L+L DI+MPEM G E+
Sbjct: 726 LVVDDEPVNLQVLNNFLRLEGYRVLTADSGPQALKIIEQQQPALILLDIMMPEMSGYEVC 785
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E +L ++ ++ V L+KPF+ +L+ ++ L
Sbjct: 786 HILREEYSLIELPIIMLSALGQVQDRIKGFESGANDYLTKPFNKEELIARISAHL 840
>gi|258511695|ref|YP_003185129.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257478421|gb|ACV58740.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 233
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q +IL+ +D++ +RR + L + G+EV +G A K + ++L++ D+++P M
Sbjct: 1 MAQTRILVVDDEERIRRLVRMYLERNGFEVDEAADGKEALHKALNQAYALIILDLMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ + + ++ +M +T A + KPF R+LV V +L
Sbjct: 61 DGRDVCAQIRQ-HSNVPIMMLTAAGDEANRVHGFELGADDYVVKPFSPRELVLRVKAMLK 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|89893567|ref|YP_517054.1| hypothetical protein DSY0821 [Desulfitobacterium hafniense Y51]
gi|89333015|dbj|BAE82610.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 227
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD+ +R + L G+E NG A +KVR F L++ D+++P +DG
Sbjct: 2 RILVVDDDERIREIVRLYLEAEGFETDEAENGNIALEKVRNGTFDLIILDLMIPGLDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T + KPF R+L V +L
Sbjct: 62 VCKVLRKET-QIPIIMLTAKGEENDRILGFDLGADDYIVKPFSPRELCARVKAVLRR 117
>gi|255524035|ref|ZP_05390997.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186892|ref|ZP_06855293.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255512322|gb|EET88600.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296048606|gb|EFG88039.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 228
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + + +GY C++G A + E L+L DI++P +DGI+
Sbjct: 7 KILIVDDDENICEVIKMYVENSGYNTQVCHDGREAQEVFLEYKPDLVLLDIMLPHVDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + V+ +T + KPF ++L+ V +L N
Sbjct: 67 VLKWIRKEY-ETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKELLARVKAVLRRYN 124
>gi|255025903|ref|ZP_05297889.1| hypothetical protein LmonocytFSL_05350 [Listeria monocytogenes FSL
J2-003]
Length = 225
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A + E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIIETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|304311894|ref|YP_003811492.1| Phosphatase regulon transcriptional regulatory protein [gamma
proteobacterium HdN1]
gi|301797627|emb|CBL45848.1| Phosphatase regulon transcriptional regulatory protein [gamma
proteobacterium HdN1]
Length = 228
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L AL +AG+ V + +G A+ K+ E+ LLL D ++P
Sbjct: 1 MKANILIVDDEIAICELLTLALEQAGFTVQAAYDGKEAWIKLAEQAPDLLLLDWMLPGTS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIELARR + D L ++ ++ + ++KPF R+L++ + LL
Sbjct: 61 GIELARRIRQTDNLRTLPIIMLSAKSEEDNKITGLEIGADDYITKPFSTRELISRIKALL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|313632601|gb|EFR99591.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
N1-067]
gi|313637138|gb|EFS02678.1| transcriptional regulatory protein ResD [Listeria seeligeri FSL
S4-171]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A D + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|291445851|ref|ZP_06585241.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291348798|gb|EFE75702.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 228
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 48/118 (40%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+
Sbjct: 30 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 89
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L + LL
Sbjct: 90 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 147
>gi|167037240|ref|YP_001664818.1| two component transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256751995|ref|ZP_05492864.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|320115659|ref|YP_004185818.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856074|gb|ABY94482.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256749105|gb|EEU62140.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|319928750|gb|ADV79435.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 234
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L AGY+V++ NG DK E L++ D+++P++D
Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKAFEGKPDLVILDLMLPDVD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + + D ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|160893753|ref|ZP_02074537.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
gi|156864738|gb|EDO58169.1| hypothetical protein CLOL250_01307 [Clostridium sp. L2-50]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD+++ + L K YE +G SA + E +L+L D+++P MDG
Sbjct: 3 KEKILIVDDDENIAELISLYLNKECYETQIAADGTSALEAFVEFAPNLILLDVMLPGMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ ++ V + KPF +LV V LL
Sbjct: 63 YQVCTEIRKQ-SNVPIIMLSAKGEVFDKVLGLKIGADDYIVKPFDSNELVARVGALLRR 120
>gi|227510659|ref|ZP_03940708.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190311|gb|EEI70378.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 242
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L +A ++V S NGA A + + ++L D+++PEM G
Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R D V+ +T + KPF R+++ +N +L
Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119
>gi|153810970|ref|ZP_01963638.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
gi|149832858|gb|EDM87941.1| hypothetical protein RUMOBE_01361 [Ruminococcus obeum ATCC 29174]
Length = 233
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E N+G A L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFETRIVNDGEQALKDFASFQPDLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ + KPF ++LV V +L
Sbjct: 64 YQVCREIR-HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDTKELVARVRAVLRR 121
>gi|20808919|ref|NP_624090.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|20517580|gb|AAM25694.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
Length = 226
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+QKI + +DD ++ + L K G+EV +G +A K++E+P L++ DI++P +DG
Sbjct: 4 SQKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALRKIQEKPPKLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L + + + ++ +T + KPF ++LV V +L
Sbjct: 64 IALCKEVRK-FSKVPIIMLTAKGDTLDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|15901898|ref|NP_346502.1| response regulator [Streptococcus pneumoniae TIGR4]
gi|15903934|ref|NP_359484.1| response regulator [Streptococcus pneumoniae R6]
gi|111657578|ref|ZP_01408316.1| hypothetical protein SpneT_02001237 [Streptococcus pneumoniae
TIGR4]
gi|116516111|ref|YP_817297.1| response regulator [Streptococcus pneumoniae D39]
gi|148989900|ref|ZP_01821183.1| response regulator [Streptococcus pneumoniae SP6-BS73]
gi|148992075|ref|ZP_01821849.1| response regulator [Streptococcus pneumoniae SP9-BS68]
gi|148998124|ref|ZP_01825637.1| response regulator [Streptococcus pneumoniae SP11-BS70]
gi|149006952|ref|ZP_01830633.1| response regulator [Streptococcus pneumoniae SP18-BS74]
gi|149023777|ref|ZP_01836238.1| response regulator [Streptococcus pneumoniae SP23-BS72]
gi|168486897|ref|ZP_02711405.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1087-00]
gi|168489143|ref|ZP_02713342.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP195]
gi|168491607|ref|ZP_02715750.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC0288-04]
gi|168494164|ref|ZP_02718307.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC3059-06]
gi|168577113|ref|ZP_02722933.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae MLV-016]
gi|194397101|ref|YP_002038671.1| response regulator PnpR [Streptococcus pneumoniae G54]
gi|221232792|ref|YP_002511946.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae ATCC 700669]
gi|225855570|ref|YP_002737082.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae JJA]
gi|225859838|ref|YP_002741348.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 70585]
gi|225861900|ref|YP_002743409.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
gi|237650562|ref|ZP_04524814.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CCRI 1974]
gi|237821702|ref|ZP_04597547.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
gi|298229982|ref|ZP_06963663.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254056|ref|ZP_06977642.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501581|ref|YP_003723521.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
gi|303259583|ref|ZP_07345559.1| response regulator [Streptococcus pneumoniae SP-BS293]
gi|303262028|ref|ZP_07347973.1| response regulator [Streptococcus pneumoniae SP14-BS292]
gi|303264484|ref|ZP_07350403.1| response regulator [Streptococcus pneumoniae BS397]
gi|303266795|ref|ZP_07352676.1| response regulator [Streptococcus pneumoniae BS457]
gi|303268985|ref|ZP_07354768.1| response regulator [Streptococcus pneumoniae BS458]
gi|307128343|ref|YP_003880374.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 670-6B]
gi|5830529|emb|CAB54572.1| response regulator [Streptococcus pneumoniae]
gi|14973592|gb|AAK76142.1| response regulator [Streptococcus pneumoniae TIGR4]
gi|15459586|gb|AAL00695.1| Response regulator [Streptococcus pneumoniae R6]
gi|116076687|gb|ABJ54407.1| response regulator [Streptococcus pneumoniae D39]
gi|147756134|gb|EDK63177.1| response regulator [Streptococcus pneumoniae SP11-BS70]
gi|147761553|gb|EDK68518.1| response regulator [Streptococcus pneumoniae SP18-BS74]
gi|147924685|gb|EDK75770.1| response regulator [Streptococcus pneumoniae SP6-BS73]
gi|147929124|gb|EDK80135.1| response regulator [Streptococcus pneumoniae SP9-BS68]
gi|147929573|gb|EDK80566.1| response regulator [Streptococcus pneumoniae SP23-BS72]
gi|183570147|gb|EDT90675.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1087-00]
gi|183572272|gb|EDT92800.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP195]
gi|183574008|gb|EDT94536.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC0288-04]
gi|183575934|gb|EDT96462.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC3059-06]
gi|183577273|gb|EDT97801.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae MLV-016]
gi|194356768|gb|ACF55216.1| PnpR response regulator TCS04 [Streptococcus pneumoniae G54]
gi|220675254|emb|CAR69846.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae ATCC 700669]
gi|225722012|gb|ACO17866.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 70585]
gi|225723632|gb|ACO19485.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae JJA]
gi|225728009|gb|ACO23860.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
gi|298237176|gb|ADI68307.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
gi|301795011|emb|CBW37475.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae INV104]
gi|301802754|emb|CBW35527.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae INV200]
gi|302636668|gb|EFL67158.1| response regulator [Streptococcus pneumoniae SP14-BS292]
gi|302639135|gb|EFL69594.1| response regulator [Streptococcus pneumoniae SP-BS293]
gi|302641452|gb|EFL71816.1| response regulator [Streptococcus pneumoniae BS458]
gi|302643703|gb|EFL73969.1| response regulator [Streptococcus pneumoniae BS457]
gi|302645854|gb|EFL76082.1| response regulator [Streptococcus pneumoniae BS397]
gi|306485405|gb|ADM92274.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 670-6B]
gi|327388818|gb|EGE87166.1| response regulator [Streptococcus pneumoniae GA04375]
gi|332071153|gb|EGI81648.1| response regulator [Streptococcus pneumoniae GA17545]
gi|332071349|gb|EGI81843.1| response regulator [Streptococcus pneumoniae GA41301]
gi|332071516|gb|EGI82009.1| response regulator [Streptococcus pneumoniae GA17570]
gi|332198503|gb|EGJ12586.1| response regulator [Streptococcus pneumoniae GA41317]
gi|332198895|gb|EGJ12976.1| response regulator [Streptococcus pneumoniae GA47901]
Length = 235
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|219667787|ref|YP_002458222.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219538047|gb|ACL19786.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 225
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KI++ +DD +R + L G+ +G A +K+ E SL + D++MP MD
Sbjct: 1 MS-KIMIVDDDPTIRELVCTLLKNDGFATCEARDGREALEKISEANPSLAVIDLMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + DL V+ +T L+KPF +L+ V L+
Sbjct: 60 GYELCRQLRQGYKDLPVLMLTAKHEKPAKVKGFEAGTDDYLTKPFDGDELLLRVKALMRR 119
>gi|227889097|ref|ZP_04006902.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
gi|268318621|ref|YP_003292277.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
gi|227850326|gb|EEJ60412.1| DNA-binding response regulator [Lactobacillus johnsonii ATCC 33200]
gi|262396996|emb|CAX66010.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
Length = 235
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVEEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|117618227|ref|YP_854835.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117559634|gb|ABK36582.1| transcriptional regulator OmpR [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 239
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q K+L+ +DD +R L + L + G+ V NG A + E FSL++ D+++P
Sbjct: 1 MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR E + V+ +T L KPF+ R+L+ + +L
Sbjct: 61 EDGLSICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|83591942|ref|YP_425694.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83574856|gb|ABC21407.1| two component transcriptional regulator, winged helix family
[Rhodospirillum rubrum ATCC 11170]
Length = 233
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L K GY V +G A V E+ +++ D ++P +
Sbjct: 1 MKSHVLIVEDEVSLVTLLRYNLEKEGYRVSEAMDGEEAMTLVAEDQPDVVILDWMLPSLS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R+ DL ++ +T + +SKPF + +L+ V LL
Sbjct: 61 GIEVCRQLRRKPRTRDLPILMLTARGEESDRIRGLNTGADDYMSKPFSMPELLARVKALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|153871532|ref|ZP_02000680.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
gi|152071998|gb|EDN69316.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
Length = 594
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 5/127 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MNQ K+L+ +D+ + L + L KA +EV+ NG SA +V+ ++L DI+MP
Sbjct: 1 MNQEQNKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E R E D+ V+F+T + ++KP + +++ VN
Sbjct: 61 GMDGFETCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQMEEVLARVN 120
Query: 116 RLLTIKN 122
LTI++
Sbjct: 121 THLTIRH 127
>gi|15644403|ref|NP_229455.1| response regulator DrrA [Thermotoga maritima MSB8]
gi|4982229|gb|AAD36722.1|AE001807_13 response regulator DrrA [Thermotoga maritima MSB8]
Length = 247
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L K GYEV+ +G A +E + + DI++P +DG
Sbjct: 11 KKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDG 70
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+L+ V +
Sbjct: 71 FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 130
Query: 120 I 120
Sbjct: 131 R 131
>gi|125974818|ref|YP_001038728.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256004925|ref|ZP_05429898.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281418728|ref|ZP_06249747.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|125715043|gb|ABN53535.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|255991105|gb|EEU01214.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281407812|gb|EFB38071.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|316941938|gb|ADU75972.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 232
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ L L K G+ + N+G A + E L+L DI++P++D
Sbjct: 1 MSAKILVVDDEKNIVDILKFNLAKEGFSTLEANDGEQAIELALSEKPDLILLDIMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E ++ IT ++KPF R+L+ V L
Sbjct: 61 GFTVCRKLRESIS-TPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRR 119
>gi|47096766|ref|ZP_00234349.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|254829514|ref|ZP_05234201.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|254900963|ref|ZP_05260887.1| hypothetical protein LmonJ_14151 [Listeria monocytogenes J0161]
gi|254913823|ref|ZP_05263835.1| DNA-binding response regulator [Listeria monocytogenes J2818]
gi|254938212|ref|ZP_05269909.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|47014852|gb|EAL05802.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|258601929|gb|EEW15254.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|258610824|gb|EEW23432.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|293591840|gb|EFG00175.1| DNA-binding response regulator [Listeria monocytogenes J2818]
Length = 225
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +LV + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|260469837|ref|ZP_05813989.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
gi|259028390|gb|EEW29714.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD +R + AL KAG + + ++GA+A + L++ DI MPEMD
Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTAAVSDGAAALRAIERHTPDLVVLDIGMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR D+ V+F++ ++KPF R+LV VN +L
Sbjct: 61 GLEVCRRLR-HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRR 119
>gi|163854786|ref|YP_001629084.1| response regulator [Bordetella petrii DSM 12804]
gi|163258514|emb|CAP40813.1| response regulator [Bordetella petrii]
Length = 232
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A+ +R E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAHTLIRAELPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR+ E + V+ +T A + ++KPF ++L+ + +L
Sbjct: 61 GLTLARKLRDDERTRAVPVIMLTAKGAEQDKVEGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|219668194|ref|YP_002458629.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219538454|gb|ACL20193.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 227
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ M+ + L GY+ ++ +G A + + + L+L DI+MP++D
Sbjct: 1 MKKTILIVEDEPRMQTIIADYLEDEGYQTLAAAHGVEALELFKSKQVDLILLDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + D + ++ +T +A ++KPF L+ LV ++N LL
Sbjct: 61 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 120
>gi|167040620|ref|YP_001663605.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|300914661|ref|ZP_07131977.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307724105|ref|YP_003903856.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|166854860|gb|ABY93269.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|300889596|gb|EFK84742.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307581166|gb|ADN54565.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
Length = 234
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L AGY+V++ NG DK E L++ D+++P++D
Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + + D ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|289550734|ref|YP_003471638.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
lugdunensis HKU09-01]
gi|315658230|ref|ZP_07911102.1| response regulator [Staphylococcus lugdunensis M23590]
gi|289180266|gb|ADC87511.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
lugdunensis HKU09-01]
gi|315496559|gb|EFU84882.1| response regulator [Staphylococcus lugdunensis M23590]
Length = 241
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+D +RR L L + + + ++G AY+ + ++ +L D+++PEMD
Sbjct: 1 MSKEILIVDDEDRIRRLLKLYLERESFNIHEASDGKEAYELAMDHNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|227894305|ref|ZP_04012110.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
gi|227863882|gb|EEJ71303.1| DNA-binding response regulator [Lactobacillus ultunensis DSM 16047]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|148380484|ref|YP_001255025.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A str. ATCC 3502]
gi|153932630|ref|YP_001384708.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A str. ATCC 19397]
gi|153937638|ref|YP_001388229.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A str. Hall]
gi|148289968|emb|CAL84081.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152928674|gb|ABS34174.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A str. ATCC 19397]
gi|152933552|gb|ABS39051.1| putative phosphate regulon DNA-binding response regulator
[Clostridium botulinum A str. Hall]
gi|322806798|emb|CBZ04367.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Clostridium botulinum H04402 065]
Length = 232
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L Y + NG A + +EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNSYNCICALNGIEALNIAKEEKPDLILLDLMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ IT ++KPF +R++V V +L
Sbjct: 64 EVCKEIRKDNNIATTPIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|306416863|gb|ADM87277.1| two-component system response regulator [Streptomyces subtropicus]
Length = 267
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + ++ L +AGY V ++G +A + L++ D+++P MDG E
Sbjct: 19 RVLVVDDDPTVAEVVVGYLHRAGYAVEQADDGPAALGRFAAHRPDLVVLDLMLPAMDGFE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR E P + V+ +T ++KPF R+LV V+ +L
Sbjct: 79 VCRRMREHGP-VPVIMLTARGDEEDRILGLETGADDYVTKPFSPRELVLRVDSVL 132
>gi|289435296|ref|YP_003465168.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171540|emb|CBH28086.1| DNA-binding response regulator ResD [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A D + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDEALDMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|314935217|ref|ZP_07842570.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
hominis C80]
gi|313656552|gb|EFS20291.1| DNA-binding response regulator YycF [Staphylococcus hominis subsp.
hominis C80]
Length = 233
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|38233451|ref|NP_939218.1| putative two component system response regulator [Corynebacterium
diphtheriae NCTC 13129]
gi|38199711|emb|CAE49371.1| Putative two component system response regulator [Corynebacterium
diphtheriae]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +D+ +R L ++L GYEV +G A + + E L++ D++MP MDG+E
Sbjct: 2 KIVVVDDEQAVRESLCRSLSFNGYEVHLAQDGVEALEVIEREQPELVILDVMMPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V LL
Sbjct: 62 VCRTLRGSGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118
>gi|269104854|ref|ZP_06157550.1| putative DNA-binding response regulator [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268161494|gb|EEZ39991.1| putative DNA-binding response regulator [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 241
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +K+L+ +DD ++R L + L K+G+ VV+ G K+ L+L D++MP
Sbjct: 1 MSQGKKVLVVDDDQEIRELLDEYLTKSGFHVVTAAEGEEMKRKLAAGEPDLILLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG L + + D+ ++ +T + ++KPF R L+ + LL
Sbjct: 61 DDGFTLCQHIRK-TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|255028239|ref|ZP_05300190.1| hypothetical protein LmonL_01479 [Listeria monocytogenes LO28]
Length = 202
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|152976971|ref|YP_001376488.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025723|gb|ABS23493.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D++ + + L +AG+EV++ +G A+ K E L++ D+++P+MD
Sbjct: 1 MSNRILVVDDEEFILTLIEFNLQQAGFEVITAMDGEVAFQKATTERPDLIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ +T ++KPF R++V V +L
Sbjct: 61 GMEVCKELRLQRVMTPILMLTAKDDEFDKVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|323701215|ref|ZP_08112890.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323533817|gb|EGB23681.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 229
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ +R+ + L GY V +G A K R E + L++ D++MP+MDGI
Sbjct: 5 RVLVVDDEEKIRQVIGIYLTNEGYRVEEAVDGEEALRKFRAESWDLIILDVMMPKMDGIA 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T + KPF R+LV + ++
Sbjct: 65 VCQEIRRV-SKVPIIMLTAKNEEVDRILGLEFGADDYMGKPFSPRELVARIKAVMRR 120
>gi|302870792|ref|YP_003839428.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302573651|gb|ADL41442.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY+V + +G A ++++ F ++L D+++P++
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTTSYDGEDALNRIKSGNFDMVLLDVMLPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E D+ ++ IT A ++KPF +R+L+ + L
Sbjct: 61 DGFSVCKKVRE-FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|289450138|ref|YP_003475554.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184685|gb|ADC91110.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 236
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ ++ L L + GY V++ +G +AY+ + L+L D ++P M+
Sbjct: 1 MDQKILVVDDEINVVDLLKDNLEREGYHVITAFDGVTAYNSALSDKPDLILLDCMLPRMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + + ++ IT + ++KPF +R+++ V L
Sbjct: 61 GVDVCKKIRQ-SSSVPIIMITAKSEEVDKVIGLELGADDYITKPFSVREVLARVKATLRR 119
>gi|228475679|ref|ZP_04060397.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
gi|228270461|gb|EEK11896.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
Length = 233
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVHCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|297588278|ref|ZP_06946921.1| response regulator [Finegoldia magna ATCC 53516]
gi|297573651|gb|EFH92372.1| response regulator [Finegoldia magna ATCC 53516]
Length = 233
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+LL ED+D++R+F L + G+E++ +G + + + DI++P +D
Sbjct: 5 MSIKVLLVEDEDNIRQFTKINLAREGFEILEAESGEKGVELAELNKPDVAVLDIMLPGID 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P++ ++ +T + L+KPF+ R+L+ + +L
Sbjct: 65 GFEVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRR 124
>gi|227524819|ref|ZP_03954868.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227088034|gb|EEI23346.1| response regulator [Lactobacillus hilgardii ATCC 8290]
Length = 242
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L +A ++V S NGA A + + ++L D+++PEM G
Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQSATNGADALSMIENNHYDIVLLDLMLPEMSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R D V+ +T + KPF R+++ +N +L
Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119
>gi|307267065|ref|ZP_07548578.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|326391596|ref|ZP_08213126.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|306917896|gb|EFN48157.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|325992378|gb|EGD50840.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 234
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L AGY+V++ NG DK E L++ D+++P++D
Sbjct: 1 MAHTVLVIEDEIHILELLRYNLEAAGYKVITSENGKEGLDKALEGKPDLVILDLMLPDVD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + + D ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GLEICKILKKNDETKNIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229917735|ref|YP_002886381.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229469164|gb|ACQ70936.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+AED+ +R F+I L +AG++V NG A EPF ++L D++MPEMD
Sbjct: 1 MN-RILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +LD ++ ++ +T + ++KPF +LV + LL
Sbjct: 60 GFEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRR 119
>gi|87301814|ref|ZP_01084648.1| two-component response regulator [Synechococcus sp. WH 5701]
gi|87283382|gb|EAQ75337.1| two-component response regulator [Synechococcus sp. WH 5701]
Length = 248
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ ++G A + R+ L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILDTRLSMIGYQVVTASDGVEALEAFRQSSPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|160934780|ref|ZP_02082166.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
gi|156866233|gb|EDO59605.1| hypothetical protein CLOLEP_03655 [Clostridium leptum DSM 753]
Length = 229
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +DD ++ L L K GY+VV N+G A + +E L+L DI++P++DG +
Sbjct: 5 KIMVVDDDKNICELLRLYLEKEGYQVVIANDGKEAVELNEKEDPELILLDIMLPQLDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T V + KPF +++V + +L
Sbjct: 65 VCREIRKK-SQVPIIMLTAKGEVFDKVLGLELGADDYIVKPFETKEVVARIKAVLRR 120
>gi|81300213|ref|YP_400421.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|81169094|gb|ABB57434.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 229
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D++ + L + L + GY+V ++G + +P+ LL+ D ++PE G++
Sbjct: 2 RILLVDDEEALTAPLHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D + V+F+T V L KPF L++L+ V LL
Sbjct: 62 LCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118
>gi|331268334|ref|YP_004394826.1| winged helix family two component transcriptional regulator
[Clostridium botulinum BKT015925]
gi|329124884|gb|AEB74829.1| two component transcriptional regulator, winged helix family
[Clostridium botulinum BKT015925]
Length = 228
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+++ + L +GY C +G SA E L+L D+++P MD
Sbjct: 4 MLGKILIIDDDENICEIIKMYLESSGYSTEICYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + D + V+ +T + + KPF ++L+ + +L
Sbjct: 64 GIDVLKWIRK-DSETPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122
Query: 121 KN 122
N
Sbjct: 123 YN 124
>gi|299821102|ref|ZP_07052990.1| response regulator [Listeria grayi DSM 20601]
gi|299816767|gb|EFI84003.1| response regulator [Listeria grayi DSM 20601]
Length = 237
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A V E L+L DI++P DG+
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALQLVEEVQPDLILLDIMLPGRDGV 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|167769138|ref|ZP_02441191.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
17241]
gi|167668778|gb|EDS12908.1| hypothetical protein ANACOL_00461 [Anaerotruncus colihominis DSM
17241]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L L K GY V N+G A K E L+L DI+MP++DG +
Sbjct: 5 KILVCDDDRNICELLRLYLEKDGYTVSIANDGEEALAKFTAEAPDLILLDIMMPKLDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++ IT + + KPF +++V V ++
Sbjct: 65 VCREIRKK-SDCPIIMITAKGETFDKVLGLELGSDDYVVKPFDPKEIVARVKAIMRR 120
>gi|224500461|ref|ZP_03668810.1| hypothetical protein LmonF1_12649 [Listeria monocytogenes Finland
1988]
gi|254830991|ref|ZP_05235646.1| hypothetical protein Lmon1_06513 [Listeria monocytogenes 10403S]
gi|284803023|ref|YP_003414888.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
gi|284996164|ref|YP_003417932.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
gi|284058585|gb|ADB69526.1| hypothetical protein LM5578_2780 [Listeria monocytogenes 08-5578]
gi|284061631|gb|ADB72570.1| hypothetical protein LM5923_2729 [Listeria monocytogenes 08-5923]
Length = 225
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|117619543|ref|YP_855794.1| phosphate regulon transcriptional regulatory protein PhoB
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117560950|gb|ABK37898.1| phosphate regulon transcriptional regulatory protein PhoB
[Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 229
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GYE V + A KVRE L++ D +MP
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETVEAEDFADGLAKVREPYPELIVLDWMMPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ ++ E+ + V+ +T ++KPF ++L ++ ++
Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|325263883|ref|ZP_08130616.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
gi|324030921|gb|EGB92203.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
Length = 224
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D+ + + L GYEV S +NG A D+ L+L D+ MP +D
Sbjct: 1 MSKKILVADDEPGIVQLLRDYFEMQGYEVASASNGVEALDQ-SSHNPDLILLDVNMPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++F+T + KPF + +L V L
Sbjct: 60 GFEVCRMIRD-HVSCPILFLTAKVEEQDRIQGLMLGGDDYILKPFSIDELGARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|291538269|emb|CBL11380.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A E + ++L DI++P+MD
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKMATENAYDMVLLDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQHIRE-FSNMPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|255017072|ref|ZP_05289198.1| hypothetical protein LmonF_03388 [Listeria monocytogenes FSL
F2-515]
Length = 220
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|110640660|ref|YP_668388.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 536]
gi|110342252|gb|ABG68489.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 536]
Length = 243
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|52080826|ref|YP_079617.1| two-component response regulator ResD [Bacillus licheniformis ATCC
14580]
gi|52786197|ref|YP_092026.1| hypothetical protein BLi02458 [Bacillus licheniformis ATCC 14580]
gi|319645215|ref|ZP_07999448.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
gi|52004037|gb|AAU23979.1| two-component response regulator ResD [Bacillus licheniformis ATCC
14580]
gi|52348699|gb|AAU41333.1| ResD [Bacillus licheniformis ATCC 14580]
gi|317393024|gb|EFV73818.1| transcriptional regulatory protein resD [Bacillus sp. BT1B_CT2]
Length = 240
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y++ NG A DK + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLKMYLERENYKIEEAENGDEAIDKALGNDYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + ++ +T A + KPF R++V V LL +
Sbjct: 68 VCRQVRDK-KATPIIMLTAKGEEANRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 125
>gi|194015722|ref|ZP_03054338.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
gi|194013126|gb|EDW22692.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
Length = 228
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +D+ DM + L + G+ +++ +NG A ++ +EP L++ DI+MP+
Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLKRQGFHIITASNGMDALRQLEKEPVDLVVLDIMMPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ +R + + ++F+T + + KPF LR+L + L
Sbjct: 61 MDGFEVCQRIRQ-TSQIPILFLTARSYEEDRIRGLEIGADDYIMKPFSLRELAARIETTL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|167461324|ref|ZP_02326413.1| two-component response regulator [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322381342|ref|ZP_08055345.1| two-component response regulator YycG-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154918|gb|EFX47189.1| two-component response regulator YycG-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 282
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + L L K GYEV+ +G +A + E L+L D+++P D
Sbjct: 44 MQRRILVVDDEQPIADILKFNLEKEGYEVICAYDGGTAVELAFSEKPDLILLDLMLPVKD 103
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +T ++KPF R+L+ V L
Sbjct: 104 GMDVCREVRGKL-NTPIIMLTAKDTEIDKVLGLEMGADDYVTKPFGTRELLARVKAHLRR 162
Query: 121 K 121
+
Sbjct: 163 Q 163
>gi|153955166|ref|YP_001395931.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146348024|gb|EDK34560.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 225
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MD
Sbjct: 1 MN-KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E ++ D+ ++ +T + ++ L+KPF + +L+ + LL
Sbjct: 60 GYEFCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 119
>gi|147676383|ref|YP_001210598.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146272480|dbj|BAF58229.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 232
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE- 58
M +K IL+ +D+ + R + L +GY V + +G +A + + + LL+ DI++P
Sbjct: 1 MKRKTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGP 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G E+ +R E D+ ++ +TG A ++KPF + +L+ V +L
Sbjct: 61 LNGFEVCKRIRE-FSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAIL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSH 123
>gi|229181171|ref|ZP_04308503.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|228602362|gb|EEK59851.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
Length = 232
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|27468287|ref|NP_764924.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus epidermidis ATCC 12228]
gi|57867182|ref|YP_188829.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis RP62A]
gi|242242958|ref|ZP_04797403.1| response regulator [Staphylococcus epidermidis W23144]
gi|251811087|ref|ZP_04825560.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|282875886|ref|ZP_06284753.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|293366360|ref|ZP_06613039.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis M23864:W2(grey)]
gi|27315833|gb|AAO04968.1|AE016748_202 alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus epidermidis ATCC 12228]
gi|57637840|gb|AAW54628.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis RP62A]
gi|242233559|gb|EES35871.1| response regulator [Staphylococcus epidermidis W23144]
gi|251805384|gb|EES58041.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|281294911|gb|EFA87438.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|291319485|gb|EFE59852.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis M23864:W2(grey)]
gi|319401007|gb|EFV89226.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus epidermidis FRI909]
gi|329724661|gb|EGG61167.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis VCU144]
gi|329733744|gb|EGG70070.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis VCU045]
gi|329737321|gb|EGG73575.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus epidermidis VCU028]
Length = 236
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +D+ + L L AGY V +G A KV E L++ D+++P+ D
Sbjct: 1 MSQKILVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALKKVETEQPELIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|84498508|ref|ZP_00997278.1| response regulator of two-component system [Janibacter sp.
HTCC2649]
gi|84381251|gb|EAP97135.1| response regulator of two-component system [Janibacter sp.
HTCC2649]
Length = 237
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ ++R L +L AG+EVV+ G A + L + D+++P+MDG
Sbjct: 11 TLLVVEDEPNIRELLATSLRFAGFEVVTAATGGEAVKLADQHHPDLCVLDVMLPDMDGFA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E L ++F+T +V ++KPF L ++V + +L
Sbjct: 71 VTRKLRESGRRLPIVFVTARDSVDDKITGLTVGGDDYVTKPFSLEEVVARIRAVLRR 127
>gi|129159|sp|P28835|YCF27_PORAE RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|14153|emb|CAA44464.1| regulatory protein [Porphyridium aerugineum]
Length = 240
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY+V+S +G A + E +L++ D++MP++DG
Sbjct: 3 KEKILVIDDEASIRRILETRLSIIGYDVISAADGEEALSIFKREHPNLVVLDLMMPKLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T + V+ + KPF ++L + +L
Sbjct: 63 YGVCQELRKE-SDVPIIMLTALSDVSDRITGLELGADDYIVKPFSPKELEARIRSVLRR 120
>gi|86156839|ref|YP_463624.1| two component transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773350|gb|ABC80187.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 230
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD + R L LG GY V S ++G + R E L++ D+++P M
Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSASDGETGLQLARTEQPDLVVVDVMLPRMG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + DP+L ++ ++ L KPF L++L+ ++ LL
Sbjct: 61 GLEVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARIDALLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|159029954|emb|CAO90333.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 226
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++ L + L + GY+V +NG + + +E + LL+ D ++P+ G++
Sbjct: 2 RILIVDDEKELTEPLEQILAQEGYDVDIADNGRTGLELAQENNYDLLILDWMLPQQSGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQYLRDQGDTTPVLFLTAKDTIDDRVAGLDAGADDYLVKPFQLRELLARVRALLRR 118
>gi|58336426|ref|YP_193011.1| response regulator [Lactobacillus acidophilus NCFM]
gi|227902981|ref|ZP_04020786.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
4796]
gi|58253743|gb|AAV41980.1| putative response regulator [Lactobacillus acidophilus NCFM]
gi|227869224|gb|EEJ76645.1| DNA-binding response regulator [Lactobacillus acidophilus ATCC
4796]
Length = 238
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|167036595|ref|YP_001664173.1| two component transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039247|ref|YP_001662232.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|256751653|ref|ZP_05492528.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|300913887|ref|ZP_07131204.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307725428|ref|YP_003905179.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|320115022|ref|YP_004185181.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853487|gb|ABY91896.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|166855429|gb|ABY93837.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256749462|gb|EEU62491.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|300890572|gb|EFK85717.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307582489|gb|ADN55888.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
gi|319928113|gb|ADV78798.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 227
Score = 158 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI + +DD ++ + L K G++V +G +A K++E+P L++ DI++P +DG
Sbjct: 4 NRKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++ +T + + KPF ++LV V +L
Sbjct: 64 IALCREVRK-FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|169824302|ref|YP_001691913.1| two-component response regulator [Finegoldia magna ATCC 29328]
gi|302380572|ref|ZP_07269037.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Finegoldia magna ACS-171-V-Col3]
gi|303234059|ref|ZP_07320708.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Finegoldia magna BVS033A4]
gi|167831107|dbj|BAG08023.1| two-component response regulator [Finegoldia magna ATCC 29328]
gi|302311515|gb|EFK93531.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Finegoldia magna ACS-171-V-Col3]
gi|302494984|gb|EFL54741.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Finegoldia magna BVS033A4]
Length = 229
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+LL ED+D++R+F L + G+E++ ++G + + + DI++P +D
Sbjct: 1 MSIKVLLVEDEDNIRQFTKINLAREGFEILEADSGEKGVELAELNKPDVAVLDIMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P++ ++ +T + L+KPF+ R+L+ + +L
Sbjct: 61 GFEVCKILRNKFPNIVIIMLTAKTQDNDKIEGLERGADDYLTKPFNPRELILRIKSVLRR 120
>gi|219850153|ref|YP_002464586.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219544412|gb|ACL26150.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 231
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ +R + + L +AG+ VV +G +A ++ R +++ DI++P +DG+
Sbjct: 5 TILIVDDEARLRELVRRYLEQAGFRVVQAADGVTALEQARAWTPDVVILDIMLPVLDGLA 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T A + L+KPF R+LV V LL
Sbjct: 65 VCRRLR-TFSDAYILMLTARAEESDRVTGLETGADDYLTKPFAPRELVARVRALLRR 120
>gi|330830656|ref|YP_004393608.1| phosphate regulon transcriptional regulatory protein PhoB
[Aeromonas veronii B565]
gi|328805792|gb|AEB50991.1| Phosphate regulon transcriptional regulatory protein PhoB
[Aeromonas veronii B565]
Length = 229
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GYE + + A KVRE L++ D +MP
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVREPYPELIVLDWMMPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ ++ E+ + V+ +T ++KPF ++L ++ ++
Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|75906838|ref|YP_321134.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75700563|gb|ABA20239.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 228
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + RF+ L GY+V ++G + RE L + D ++P +
Sbjct: 1 MTAHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T V+ + KPF + +L+ + L
Sbjct: 61 GLEICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRR 120
>gi|291458230|ref|ZP_06597620.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
078 str. F0262]
gi|291418763|gb|EFE92482.1| DNA-binding response regulator ResD [Oribacterium sp. oral taxon
078 str. F0262]
Length = 251
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD + + L K ++ +G A V E L++ D+++P +DG
Sbjct: 4 KQRILIVDDDSSISELISLYLEKECFDTRMVEDGEEALRIVPEYRPDLIILDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + + V+ ++ + KPF ++LV V +L
Sbjct: 64 YEVCRRLR-MRSSVPVIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|51891888|ref|YP_074579.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855577|dbj|BAD39735.1| two-component response regulator, probably involved in phosphate
sensing [Symbiobacterium thermophilum IAM 14863]
Length = 235
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ + + L +AG+EV++ +NG REE L++ D+++P +DG
Sbjct: 6 ERILVVDDEPSILELVAYNLRRAGFEVLTADNGEDGLRIAREEEIDLVILDVMLPGIDGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R +L V+ +T ++KPF R+L V +L
Sbjct: 66 EVLRALR-RHSELPVLMLTARGEEIDRVVGFEIGADDYVTKPFSPRELTGRVKAILRR 122
>gi|253579947|ref|ZP_04857215.1| two component transcriptional regulator [Ruminococcus sp.
5_1_39B_FAA]
gi|251848946|gb|EES76908.1| two component transcriptional regulator [Ruminococcus sp.
5_1_39BFAA]
Length = 230
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + +L + G EV +G A +K +++ + ++L D+++P+MD
Sbjct: 1 MSRKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVEKAKDKKYDIILLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSNVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|317122946|ref|YP_004102949.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
gi|315592926|gb|ADU52222.1| two component transcriptional regulator, winged helix family
[Thermaerobacter marianensis DSM 12885]
Length = 276
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 53/114 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED++ + + +AL + G+ V ++G D R F L+ D+++P +DG E
Sbjct: 2 HVLVVEDEERLAEAVRRALERDGHTVDVAHDGLQGLDLARSGTFDALVLDVMLPGLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ RR + ++ +T AVA L KPF L +L V L
Sbjct: 62 ICRRLRAEGNPVPILILTARDAVADRVRGLDSGADDYLVKPFALVELQARVRAL 115
>gi|225573005|ref|ZP_03781760.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
10507]
gi|225039656|gb|EEG49902.1| hypothetical protein RUMHYD_01196 [Blautia hydrogenotrophica DSM
10507]
Length = 229
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + +L + +V +G A + + + ++L D+++P+MD
Sbjct: 1 MSKKVLVVDDEKLIVKGIRFSLEQDDMDVDCAYDGEEALELAKANKYDIILLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
Query: 121 KN 122
+
Sbjct: 120 AH 121
>gi|17228689|ref|NP_485237.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17130541|dbj|BAB73151.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 228
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + RF+ L GY+V ++G + RE L + D ++P +
Sbjct: 1 MTTHILLVEDEVKLARFVELELSSEGYKVSVAHDGITGLTLARESTPDLAVLDWMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T V+ + KPF + +L+ + L
Sbjct: 61 GLEICRRLRATGNSIPVILLTARDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRR 120
>gi|16804621|ref|NP_466106.1| hypothetical protein lmo2583 [Listeria monocytogenes EGD-e]
gi|224503624|ref|ZP_03671931.1| hypothetical protein LmonFR_14158 [Listeria monocytogenes FSL
R2-561]
gi|16412071|emb|CAD00661.1| lmo2583 [Listeria monocytogenes EGD-e]
Length = 225
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|89893852|ref|YP_517339.1| hypothetical protein DSY1106 [Desulfitobacterium hafniense Y51]
gi|219668228|ref|YP_002458663.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89333300|dbj|BAE82895.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538488|gb|ACL20227.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 237
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +RRF+ L AGYEV +G A + E L++ D+++P +DG+E
Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E PD ++ +T + KPF+ +L+ + +L ++
Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRD 125
>gi|317056207|ref|YP_004104674.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315448476|gb|ADU22040.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 224
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ D+ + + + GYEVV+ +G+ A D R+E F L++ DI+MP+ D
Sbjct: 1 MS-RILIVDDEPDIITLISRYAEREGYEVVTAEDGSQAIDICRKEDFDLIVMDIMMPDTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ E D+ V+ ++ ++KPF R+L+ + ++
Sbjct: 60 GFTACKKIKE-FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPRELMARIKAVINR 118
>gi|217965616|ref|YP_002351294.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|289433637|ref|YP_003463509.1| two-component response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|290892561|ref|ZP_06555554.1| DNA-binding two-component system response regulator [Listeria
monocytogenes FSL J2-071]
gi|315280741|ref|ZP_07869554.1| transcriptional regulatory protein WalR [Listeria marthii FSL
S4-120]
gi|217334886|gb|ACK40680.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|289169881|emb|CBH26421.1| two-component response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|290557870|gb|EFD91391.1| DNA-binding two-component system response regulator [Listeria
monocytogenes FSL J2-071]
gi|307569835|emb|CAR83014.1| DNA-binding response regulator [Listeria monocytogenes L99]
gi|313611043|gb|EFR85929.1| transcriptional regulatory protein WalR [Listeria monocytogenes FSL
F2-208]
gi|313615609|gb|EFR88941.1| transcriptional regulatory protein WalR [Listeria marthii FSL
S4-120]
gi|313634987|gb|EFS01371.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
N1-067]
gi|313639665|gb|EFS04456.1| transcriptional regulatory protein WalR [Listeria seeligeri FSL
S4-171]
Length = 237
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|119896456|ref|YP_931669.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
BH72]
gi|119668869|emb|CAL92782.1| phosphate regulon transcriptional regulatory protein [Azoarcus sp.
BH72]
Length = 236
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + L +AG+ VV + +A VR+ L+L D ++P M
Sbjct: 1 MPANILLVEDEPAIQELIAANLSRAGHHVVRAADAEAAQRLVRDALPDLVLLDWMLPGMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ ARR E ++ ++ +T ++KPF R+LV + +L
Sbjct: 61 GIDFARRLRAEERTREIPIIMLTARGEEQDKVAGLETGADDYITKPFSPRELVARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|56751699|ref|YP_172400.1| two-component response regulator for energy transfer from
phycobilisomes to photosystems [Synechococcus elongatus
PCC 6301]
gi|81301225|ref|YP_401433.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|56686658|dbj|BAD79880.1| two-component response regulator for energy transfer from
phycobilisomes to photosystems [Synechococcus elongatus
PCC 6301]
gi|81170106|gb|ABB58446.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 255
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L AGY+VV ++G A +E L++ D+++P++DG
Sbjct: 13 KEKILVVDDEAAVRRILTMRLSMAGYQVVVASDGHEALAMFEQEAPDLIVLDVMLPKLDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R +L D+ ++ ++ +A L KPF ++L + +L
Sbjct: 73 YGVCRELRKL-SDVPIIMLSALGDIADRITGLDLGADDYLPKPFSPKELEARIATILRR 130
>gi|315283776|ref|ZP_07871856.1| heme response regulator HssR [Listeria marthii FSL S4-120]
gi|313612577|gb|EFR86639.1| heme response regulator HssR [Listeria marthii FSL S4-120]
Length = 225
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAERIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF ++LV + LL
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPQELVFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|304317190|ref|YP_003852335.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778692|gb|ADL69251.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 235
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + L L GY V+ +NG +K RE L+L D+++P++D
Sbjct: 1 MTHTILVIEDEAHILELLRYNLEAQGYNVILTDNGKEGLEKCRELSPDLVLLDLMLPDID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ ++ E ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GIDVCKKIKSDEHLKNIPIIMLTAKSEEFDKILGLELGADDYITKPFSIRELLARIKVVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|225868178|ref|YP_002744126.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
gi|225701454|emb|CAW98586.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
Length = 236
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+ V+ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|326390847|ref|ZP_08212399.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|325993106|gb|EGD51546.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 227
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI + +DD ++ + L K G++V +G SA K++E+P L++ DI++P +DG
Sbjct: 4 NEKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQSALKKIQEKPPKLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++ +T + + KPF ++LV V +L
Sbjct: 64 IALCREVRK-FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|312126307|ref|YP_003991181.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311776326|gb|ADQ05812.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 230
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY+V + +G A ++++ E F ++L D+++P++
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E D+ ++ IT A ++KPF +R+L+ + L
Sbjct: 61 DGFSVCKKVRE-FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|212634120|ref|YP_002310645.1| transcriptional regulatory protein [Shewanella piezotolerans WP3]
gi|212555604|gb|ACJ28058.1| Response regulator receiver:Transcriptional regulatory protein
[Shewanella piezotolerans WP3]
Length = 229
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + G+ + + SA D + E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTTAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + ++
Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|119485204|ref|ZP_01619589.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119457432|gb|EAW38557.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 237
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD ++ + + + L G+ + +G A + + + L++ D+++P +DG+E
Sbjct: 2 KILIVEDDGEIAQLIQQTLENEGFSCETARDGWGALEWFQTQQPDLIVLDLMLPGLDGLE 61
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++ +T + L KPF R+LV + LL
Sbjct: 62 VCARIRQQPGVKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPRELVARIRALLRR 120
>gi|160880093|ref|YP_001559061.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428759|gb|ABX42322.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 229
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + +L + G EV +G A +++ + ++L D+++P M+
Sbjct: 1 MSKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALVFAKQKEYDVILLDVMLPRMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E ++ V+ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQQIRE-FSNMPVIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|304407986|ref|ZP_07389636.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304343005|gb|EFM08849.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 241
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ + R L L + GYE ++GA + F L++ DI++P ++
Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYETTVIDHGAEGLQAALQRSFDLIILDIMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + ++ +T A ++KPF + +L+ V+ +L
Sbjct: 61 GFEILTKLRQNGIRTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120
>gi|222150271|ref|YP_002559424.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
gi|222119393|dbj|BAH16728.1| DNA-binding response regulator [Macrococcus caseolyticus JCSC5402]
Length = 233
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KI++ +D+ + L L K GYEV +G A + + + ++L DI++P D
Sbjct: 1 MSRKIVVVDDEKPIADILEFNLKKEGYEVHVAYDGDDAVELIYDIQPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|206969831|ref|ZP_03230785.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|229072359|ref|ZP_04205563.1| Two component transcriptional regulator, winged helix [Bacillus
cereus F65185]
gi|229082107|ref|ZP_04214584.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock4-2]
gi|206735519|gb|EDZ52687.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228701203|gb|EEL53712.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock4-2]
gi|228710784|gb|EEL62755.1| Two component transcriptional regulator, winged helix [Bacillus
cereus F65185]
Length = 232
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|309806478|ref|ZP_07700483.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 03V1-b]
gi|308167151|gb|EFO69325.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 03V1-b]
Length = 234
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + DL ++ +T AA ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|163790938|ref|ZP_02185361.1| DNA-binding response regulator [Carnobacterium sp. AT7]
gi|159873780|gb|EDP67861.1| DNA-binding response regulator [Carnobacterium sp. AT7]
Length = 235
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+ DG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L V L +
Sbjct: 62 EVCREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELAARVKANLRRHD 120
>gi|157693907|ref|YP_001488369.1| response regulator [Bacillus pumilus SAFR-032]
gi|157682665|gb|ABV63809.1| response regulator [Bacillus pumilus SAFR-032]
Length = 228
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +D+ DM + L + G+ +++ NNG A ++ +EP L++ DI+MP+
Sbjct: 1 MKEQMHILIVDDEFDMLELIGSFLRRQGFHIITANNGMEALRQLEKEPVDLVVLDIMMPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ +R + + ++F+T + + KPF LR+L + L
Sbjct: 61 MDGFEVCQRIRQ-TSQIPILFLTARSYEEDRIKGLEIGADDYIMKPFSLRELAARIETTL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|219667295|ref|YP_002457730.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537555|gb|ACL19294.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 234
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD ++ + L + GY V+ G A + + +E L+L D+++PE+DG++
Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-- 119
+ ++ + ++ ++ ++ VA ++KPF R+L+ + L
Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLREE 122
Query: 120 IKN 122
+N
Sbjct: 123 RRN 125
>gi|257792595|ref|YP_003183201.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|317488883|ref|ZP_07947413.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325832718|ref|ZP_08165481.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
gi|257476492|gb|ACV56812.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|316911957|gb|EFV33536.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325485857|gb|EGC88318.1| sensory transduction protein RegX3 [Eggerthella sp. HGA1]
Length = 231
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN +IL+ +D+ + F+ AL K G+ +NG A + + L + DI++P
Sbjct: 1 MNDTPHRILVVDDEPSITEFVSYALKKEGFFTDVVDNGEDALALATKNSYDLFVLDIMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG EL RR + V+F++ L+KPF +R+L+ V L
Sbjct: 61 GMDGYELCRRLRSKT-TVPVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRAL 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|239980465|ref|ZP_04702989.1| two-component systen response regulator [Streptomyces albus J1074]
gi|291452324|ref|ZP_06591714.1| two-component system response regulator [Streptomyces albus J1074]
gi|291355273|gb|EFE82175.1| two-component system response regulator [Streptomyces albus J1074]
Length = 246
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A +K L++ DI MP MDG+
Sbjct: 13 QRILIVDDEPAVRDALRRSLAFEGYGTEVAVDGLDALEKAASYRPDLIVLDIQMPRMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + ++ +T V L KPF L +L V LL +
Sbjct: 73 TAARRVRAAQDTVPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSS 132
>gi|225568830|ref|ZP_03777855.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
15053]
gi|225162329|gb|EEG74948.1| hypothetical protein CLOHYLEM_04909 [Clostridium hylemonae DSM
15053]
Length = 231
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L + V N A D +R E L + D++MP+MD
Sbjct: 1 MAEKILIVDDEQEIADLVALYLQNENFTVFKHYNALDALDCIRSETPDLAILDVMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R E V+ +T ++KPF +LV V L
Sbjct: 61 GLELCRNIREQYRY-PVIMLTAKDGEIDKITGLTLGADDYITKPFLPLELVARVKAQLRR 119
>gi|182685018|ref|YP_001836765.1| response regulator [Streptococcus pneumoniae CGSP14]
gi|182630352|gb|ACB91300.1| response regulator [Streptococcus pneumoniae CGSP14]
Length = 236
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|149072098|ref|YP_001293493.1| OmpR-like protein [Rhodomonas salina]
gi|134303049|gb|ABO70853.1| OmpR-like protein [Rhodomonas salina]
Length = 248
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GY VV+ +G A + +++E +L++ DI++P++DG
Sbjct: 9 KEKILVVDDEASIRRILETRLSMIGYNVVTAADGEEALNLLKKENPNLIVLDIMIPKLDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 69 YGVCQEIRKE-SDVPIIMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRSVLRR 126
>gi|306521881|ref|ZP_07408228.1| two-component sensor histidine kinase [Clostridium difficile
QCD-32g58]
Length = 620
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD
Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+
Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119
>gi|90577311|ref|ZP_01233122.1| putative DNA-binding response regulator [Vibrio angustum S14]
gi|90440397|gb|EAS65577.1| putative DNA-binding response regulator [Vibrio angustum S14]
Length = 243
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++IL+ +DD ++R L + L K G+EV + G + L+L DI+MP DG
Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D+ ++ +T + ++KPF R L+ + +L
Sbjct: 64 FTLCQHIRK-TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRR 121
>gi|256786375|ref|ZP_05524806.1| two-component systen response regulator [Streptomyces lividans
TK24]
gi|289770266|ref|ZP_06529644.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289700465|gb|EFD67894.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 248
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG+
Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 75 TAARRIRGAGDLTPIVMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134
>gi|310288067|ref|YP_003939326.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
gi|309252004|gb|ADO53752.1| Two-component response regulator regX [Bifidobacterium bifidum S17]
Length = 234
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118
>gi|260590120|ref|ZP_05856033.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
gi|331084377|ref|ZP_08333481.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260539632|gb|EEX20201.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
gi|330401641|gb|EGG81222.1| hypothetical protein HMPREF0992_02405 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 229
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +D+ + + + +L + G EV +G A +K +E+ + ++L DI++P++
Sbjct: 1 MSKRVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEKAKEKEYDMILLDIMLPKLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E + ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLEVCQQIRE-FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|205373785|ref|ZP_03226587.1| two-component response regulator [Bacillus coahuilensis m4-4]
Length = 239
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +IL+ +D+D +RR L L + Y + ++G A + E + +L DI+MPE
Sbjct: 1 MDKEIRILVVDDEDRIRRLLRMYLERENYLIDEASDGNEALELALENSYDCILLDIMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ + E V+ +T + + KPF R++V V LL
Sbjct: 61 KDGIEVCQAIREK-KATPVIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|169832040|ref|YP_001718022.1| two component transcriptional regulator [Candidatus Desulforudis
audaxviator MP104C]
gi|169638884|gb|ACA60390.1| two component transcriptional regulator, winged helix family
[Candidatus Desulforudis audaxviator MP104C]
Length = 227
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +R L K G+ VV +G A +++ L++ DI++P+ DG +
Sbjct: 6 ILMVEDEAAVRDVARLYLEKEGFRVVPALDGEQALEQLTAVNPDLVILDIMLPKKDGWSV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ ++ ++KPF R+LV V +L N
Sbjct: 66 CREIRRQTA-VPIIMLSAKGEEYDRVLGLELGADDYVTKPFSPRELVARVKAVLRRSN 122
>gi|157414226|ref|YP_001485092.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
gi|254526749|ref|ZP_05138801.1| two-component response regulator [Prochlorococcus marinus str. MIT
9202]
gi|157388801|gb|ABV51506.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
gi|221538173|gb|EEE40626.1| two-component response regulator [Prochlorococcus marinus str. MIT
9202]
Length = 248
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M
Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|154686557|ref|YP_001421718.1| hypothetical protein RBAM_021260 [Bacillus amyloliquefaciens FZB42]
gi|308174102|ref|YP_003920807.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
gi|154352408|gb|ABS74487.1| ResD [Bacillus amyloliquefaciens FZB42]
gi|307606966|emb|CBI43337.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
gi|328552769|gb|AEB23261.1| two-component response regulator [Bacillus amyloliquefaciens TA208]
gi|328912433|gb|AEB64029.1| Transcriptional regulatory protein resD [Bacillus amyloliquefaciens
LL3]
Length = 240
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + NG A + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLRMYLERENYVIEEAENGDEAIKMGLASDYDLVLLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQLREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|77920222|ref|YP_358037.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77546305|gb|ABA89867.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
Length = 238
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD +R L+ L GY V++ +G A E F L L DI+MP +G +
Sbjct: 5 RILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGCNGYD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R DP L ++ +T ++KPF + +L + +L
Sbjct: 65 VCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFGVHELRARIAAVLRR 121
>gi|89072346|ref|ZP_01158925.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
gi|89051878|gb|EAR57330.1| putative DNA-binding response regulator [Photobacterium sp. SKA34]
Length = 243
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++IL+ +DD ++R L + L K G+EV + G + L+L DI+MP DG
Sbjct: 4 SKQILVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAGGYPDLILLDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D+ ++ +T + ++KPF R L+ + +L
Sbjct: 64 FTLCQHIRK-TSDVPIIMLTAVSEEMDQIIGLEIGADDYIAKPFSPRQLLARIKAILRR 121
>gi|307265089|ref|ZP_07546649.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919887|gb|EFN50101.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 227
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI + +DD ++ + L K G++V +G +A K++E+P L++ DI++P +DG
Sbjct: 4 NEKIYVVDDDKNICEIVSLYLEKEGFDVEQIYDGQTALKKIQEKPPKLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++ +T + + KPF ++LV V +L
Sbjct: 64 IALCREVRK-FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|325681118|ref|ZP_08160648.1| response regulator receiver domain protein [Ruminococcus albus 8]
gi|324107040|gb|EGC01326.1| response regulator receiver domain protein [Ruminococcus albus 8]
Length = 231
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+AEDD D+ L L AG++V+S +NG AYD ++ E L + DI+MPEM+
Sbjct: 1 MSYKILVAEDDADICEVLRLYLENAGFDVISADNGIRAYDLLKSESPDLAIFDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + + ++F++ A + ++KPF+ ++V V L
Sbjct: 61 GFELTKRVR-ITSSIPIIFLSAMNADSDKILGLDIGADDYITKPFNPLEVVARVQSNLRR 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|269964977|ref|ZP_06179142.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
gi|269830280|gb|EEZ84505.1| Probable transcriptional regulator ycf27 [Vibrio alginolyticus 40B]
Length = 235
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + D+ ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|119963548|ref|YP_946794.1| response regulator of two-component system [Arthrobacter aurescens
TC1]
gi|119950407|gb|ABM09318.1| response regulator of two-component system [Arthrobacter aurescens
TC1]
Length = 239
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M + K+L+ +D+ ++R L +L AG+EVV+ NG A L + D++
Sbjct: 4 MKKNGPEAKLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAADLHSPDLAVLDVM 63
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P+MDG + RR V+F+T ++KPF L ++V +
Sbjct: 64 LPDMDGFTVTRRLRAAGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIR 123
Query: 116 RLLTI 120
+L
Sbjct: 124 AVLRR 128
>gi|21222554|ref|NP_628333.1| two-component systen response regulator [Streptomyces coelicolor
A3(2)]
gi|7636029|emb|CAB88489.1| putative two-component systen response regulator [Streptomyces
coelicolor A3(2)]
Length = 248
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY+ +GA A +K L++ DI MP MDG+
Sbjct: 15 QRILIVDDEPAVREALQRSLAFEGYDTEVAVDGADALEKATAYRPDLVVLDIQMPRMDGL 74
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR ++ +T V L KPF L +L + LL +
Sbjct: 75 TAARRIRGAGDLTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRRSS 134
>gi|126729385|ref|ZP_01745199.1| two-component response regulator [Sagittula stellata E-37]
gi|126710375|gb|EBA09427.1| two-component response regulator [Sagittula stellata E-37]
Length = 228
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L AL +AG+ V+ +GA A E L++ DI +PEMDG E
Sbjct: 2 KILIVDDDPSLRDLLRLALERAGHSVICAADGAMALTHAMRETPDLIVLDIGLPEMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D+ V+F+T ++KPF R++V V +L
Sbjct: 62 VCRRLRAR-SDVPVLFLTARDDEVDRIVGLEMGADDYVTKPFSPREVVARVAAILRR 117
>gi|116493525|ref|YP_805260.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
gi|116103675|gb|ABJ68818.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Pediococcus pentosaceus ATCC 25745]
Length = 233
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L K GY+VV+ +G A +V EE L+L D+++P++DG+E
Sbjct: 3 KILVVDDEKPISDIVKFNLDKEGYDVVTAYDGEEALAQVEEEKPDLILLDLMLPKIDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+AR+ ++ ++ +T + ++KPF R+LV V L ++
Sbjct: 63 VARQVRAKH-NIPIIMVTAKDSELDKVVGLELGADDYVTKPFSNRELVARVKANLRRQD 120
>gi|322376761|ref|ZP_08051254.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
gi|321282568|gb|EFX59575.1| DNA-binding response regulator VicR [Streptococcus sp. M334]
Length = 234
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+A+ + + ++ ++ + ++KPF R+L V LL +
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSH 120
>gi|228475155|ref|ZP_04059881.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
gi|314936205|ref|ZP_07843552.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus hominis subsp. hominis C80]
gi|228270766|gb|EEK12168.1| transcriptional regulatory protein [Staphylococcus hominis SK119]
gi|313654824|gb|EFS18569.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Staphylococcus hominis subsp. hominis C80]
Length = 236
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A KV+E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVDVAYDGEEALKKVKEVKPELIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|256851719|ref|ZP_05557107.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii 27-2-CHN]
gi|260661563|ref|ZP_05862475.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii 115-3-CHN]
gi|282933547|ref|ZP_06338917.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
208-1]
gi|297205337|ref|ZP_06922733.1| response regulator [Lactobacillus jensenii JV-V16]
gi|256615677|gb|EEU20866.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii 27-2-CHN]
gi|260547620|gb|EEX23598.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii 115-3-CHN]
gi|281302290|gb|EFA94522.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
208-1]
gi|297149915|gb|EFH30212.1| response regulator [Lactobacillus jensenii JV-V16]
Length = 237
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G+EV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEINPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|195978501|ref|YP_002123745.1| TCS response regulator VicR [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225870885|ref|YP_002746832.1| response regulator protein [Streptococcus equi subsp. equi 4047]
gi|195975206|gb|ACG62732.1| TCS response regulator VicR [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700289|emb|CAW94550.1| response regulator protein [Streptococcus equi subsp. equi 4047]
Length = 236
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+ V+ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDTVTAFDGKEAVAVFEEEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|145300939|ref|YP_001143780.1| two-component system osmolarity response regulator OmpR [Aeromonas
salmonicida subsp. salmonicida A449]
gi|142853711|gb|ABO92032.1| two-component system osmolarity response regulator OmpR [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 239
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q K+L+ +DD +R L + L + G+ V NG A + E FSL++ D+++P
Sbjct: 1 MSQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR E + V+ +T L KPF+ R+L+ + +L
Sbjct: 61 EDGLSICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|308176349|ref|YP_003915755.1| two-component system response regulator [Arthrobacter arilaitensis
Re117]
gi|307743812|emb|CBT74784.1| two-component system response regulator [Arthrobacter arilaitensis
Re117]
Length = 235
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R L +L AG+EVV+ NG A V + L + D+++P+MDG
Sbjct: 9 KLLVVDDEPNIRELLSTSLRFAGFEVVAAANGREALAAVEADEPDLAVLDVMLPDMDGFT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ V+F+T + ++KPF L ++V + +L
Sbjct: 69 ITRKLRAAGRHFPVLFLTARDDTSDKVTGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125
>gi|302543578|ref|ZP_07295920.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
53653]
gi|302461196|gb|EFL24289.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
53653]
Length = 246
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R L ++L GY + +G A +K L++ D++MP MDG+
Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYATETAVDGLDALEKAGTYDPELIVLDVLMPRMDGLT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L+ + LL +
Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130
>gi|123969361|ref|YP_001010219.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
gi|123199471|gb|ABM71112.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
Length = 248
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M
Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEALESFHRDSPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|104773345|ref|YP_618325.1| two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103422426|emb|CAI96975.1| Two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|325124950|gb|ADY84280.1| Putative response regulator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 242
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A +KV E LL+ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEEYNPDLLILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|312134119|ref|YP_004001457.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
gi|311774170|gb|ADQ03657.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
Length = 230
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY+V + +G A ++++ E + ++L D+++P++
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENYDMVLLDVMLPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E D+ ++ IT A ++KPF +R+L+ V L
Sbjct: 61 DGFSVCKKVRE-FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARVRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|302541878|ref|ZP_07294220.1| DNA-binding response regulator ResD [Streptomyces hygroscopicus
ATCC 53653]
gi|302459496|gb|EFL22589.1| DNA-binding response regulator ResD [Streptomyces himastatinicus
ATCC 53653]
Length = 262
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L +AG+ V +G A + + L++ D+++P MDG++
Sbjct: 9 RVLVVDDDPTVAEVVAGYLTRAGFAVDRAADGPGALARADAQWPDLVVLDLMLPGMDGLD 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P + V+ +T ++KPF R+LV V +L
Sbjct: 69 VCRALRGKGP-VPVIMLTARGDEDDRILGLEIGADDYVTKPFSPRELVLRVESVLRR 124
>gi|229138085|ref|ZP_04266683.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|228645430|gb|EEL01664.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 218
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|197301860|ref|ZP_03166929.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
29176]
gi|197299090|gb|EDY33621.1| hypothetical protein RUMLAC_00586 [Ruminococcus lactaris ATCC
29176]
Length = 229
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + + + +L + G EV +G A + ++ + L+L D+++P++D
Sbjct: 1 MSKKILVVDDEKLIVKGICFSLEQEGMEVDCAYDGEEALEYAKKCEYDLVLLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E D+ V+ +T + ++KPF++ ++ + ++
Sbjct: 61 GFQVCQQIRE-FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|170757153|ref|YP_001780676.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169122365|gb|ACA46201.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 233
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKETSFHLIILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R LV V L+
Sbjct: 61 LSGEEVCSKIRE-SSNVPIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRKLVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|47094036|ref|ZP_00231766.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|226225129|ref|YP_002759236.1| two-component response regulator [Listeria monocytogenes Clip81459]
gi|254826316|ref|ZP_05231317.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|254932174|ref|ZP_05265533.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
gi|47017586|gb|EAL08389.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|225877591|emb|CAS06305.1| Putative two-component response regulator [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293583731|gb|EFF95763.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
gi|293595557|gb|EFG03318.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|328465186|gb|EGF36454.1| two-component response regulator [Listeria monocytogenes 1816]
gi|332313013|gb|EGJ26108.1| Alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes str. Scott A]
Length = 225
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|323703413|ref|ZP_08115061.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
gi|323531594|gb|EGB21485.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
Length = 454
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 65/118 (55%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D++ M L K L + GY+V++ G + +R E SL++ D+ MPEMD
Sbjct: 1 MTRKILVIDDEEHMCWALEKGLRQEGYQVLTATRGKQGLELIRNEVPSLVILDLKMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RA E+ P L V+ IT + ++ ++KPF L +L V + L
Sbjct: 61 GLEVLVRAKEMMPKLPVIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKLVVKQAL 118
>gi|259418415|ref|ZP_05742333.1| transcriptional regulatory protein ChvI [Silicibacter sp.
TrichCH4B]
gi|259345810|gb|EEW57654.1| transcriptional regulatory protein ChvI [Silicibacter sp.
TrichCH4B]
Length = 230
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD D+ A+ KAG+E + ++G +A + ++E L++ DI +PEMD
Sbjct: 1 MPARILVVDDDPDILEVTGFAVEKAGFETLFASDGLAAINAQQQEDPDLIVLDIGLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R ++ ++ ++F+T L+KPF R+LV + +L
Sbjct: 61 GLEVCREIRKI-SEVPILFLTARDEEIDRILGLELGADDYLTKPFSPRELVARIKAILKR 119
>gi|229100005|ref|ZP_04230925.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229119605|ref|ZP_04248884.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228663848|gb|EEL19410.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228683433|gb|EEL37391.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 228
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD D+R + L G + + A + E+ F L+L D++MP MD
Sbjct: 1 MSDKILIVDDDKDIRNLISVYLENEGLQTQKAEDAIEALKLLEEKEFDLILLDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E + ++ ++ + LSKPF+ +L+ V L
Sbjct: 61 GIEACLKIREEQ-TIPIIMLSAKSEDMDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119
>gi|21222153|ref|NP_627932.1| response regulator [Streptomyces coelicolor A3(2)]
gi|7211008|emb|CAB76988.1| putative response regulator [Streptomyces coelicolor A3(2)]
Length = 256
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L +AGY V +G A + L++ D+++P MDG+E
Sbjct: 30 RILVVDDDPTVAEVVAGYLDRAGYRVDRAGDGPEALARAAGHRPDLVVLDLMLPGMDGLE 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 90 VCRRLRGQGP-VPVIMLTARGDEDDRVLGLEVGADDYVTKPFSPRELVLRVESVL 143
>gi|227879006|ref|ZP_03996902.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
gi|256844225|ref|ZP_05549711.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|256849375|ref|ZP_05554808.1| two-component system response regulatory system response regulator
[Lactobacillus crispatus MV-1A-US]
gi|262047880|ref|ZP_06020828.1| two-component system response regulator [Lactobacillus crispatus
MV-3A-US]
gi|293380062|ref|ZP_06626158.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
gi|295691935|ref|YP_003600545.1| response regulator [Lactobacillus crispatus ST1]
gi|312977021|ref|ZP_07788770.1| DNA-binding response regulator VicR [Lactobacillus crispatus
CTV-05]
gi|227861395|gb|EEJ69018.1| DNA-binding response regulator [Lactobacillus crispatus JV-V01]
gi|256613303|gb|EEU18506.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|256714151|gb|EEU29139.1| two-component system response regulatory system response regulator
[Lactobacillus crispatus MV-1A-US]
gi|260571824|gb|EEX28397.1| two-component system response regulator [Lactobacillus crispatus
MV-3A-US]
gi|290923376|gb|EFE00283.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
gi|295030041|emb|CBL49520.1| Response regulator [Lactobacillus crispatus ST1]
gi|310896349|gb|EFQ45414.1| DNA-binding response regulator VicR [Lactobacillus crispatus
CTV-05]
Length = 238
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|319793996|ref|YP_004155636.1| two component transcriptional regulator winged helix family
[Variovorax paradoxus EPS]
gi|315596459|gb|ADU37525.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus EPS]
Length = 243
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +DD +R L + L + G+EV+ +G + + + L++ D++MP DG+
Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ V+ +L +
Sbjct: 70 VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127
>gi|291545359|emb|CBL18467.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 233
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E N+G A + L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELVALYLTKECFETKIVNDGEEALKQFHIFHPDLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ + KPF ++LV V +L
Sbjct: 64 YQVCREIR-HTSDVPIIMLSAKGETFDKVLGLELGADDYIIKPFDSKELVARVRAVLRR 121
>gi|161506705|ref|YP_001576655.1| putative response regulator [Lactobacillus helveticus DPC 4571]
gi|160347694|gb|ABX26368.1| putative response regulator [Lactobacillus helveticus DPC 4571]
Length = 238
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|16799392|ref|NP_469660.1| hypothetical protein lin0315 [Listeria innocua Clip11262]
gi|46906528|ref|YP_012917.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|47091424|ref|ZP_00229221.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|116871681|ref|YP_848462.1| DNA-binding two-component response regulator [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|226222923|ref|YP_002757030.1| two-component response regulator [Listeria monocytogenes Clip81459]
gi|254825660|ref|ZP_05230661.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|254853439|ref|ZP_05242787.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|254932515|ref|ZP_05265874.1| DNA-binding two-component system response regulator [Listeria
monocytogenes HPB2262]
gi|254992491|ref|ZP_05274681.1| hypothetical protein LmonocytoFSL_05021 [Listeria monocytogenes FSL
J2-064]
gi|255022387|ref|ZP_05294373.1| hypothetical protein LmonocyFSL_00585 [Listeria monocytogenes FSL
J1-208]
gi|300764580|ref|ZP_07074572.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
gi|16412744|emb|CAC95548.1| lin0315 [Listeria innocua Clip11262]
gi|46879793|gb|AAT03094.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|47020101|gb|EAL10837.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|116740559|emb|CAK19679.1| DNA-binding two-component response regulator [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|225875385|emb|CAS04082.1| Putative two-component response regulator [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258606809|gb|EEW19417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|293584070|gb|EFF96102.1| DNA-binding two-component system response regulator [Listeria
monocytogenes HPB2262]
gi|293594905|gb|EFG02666.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|300514687|gb|EFK41742.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
gi|328467897|gb|EGF38937.1| hypothetical protein LM1816_09180 [Listeria monocytogenes 1816]
gi|328476127|gb|EGF46836.1| hypothetical protein LM220_01767 [Listeria monocytogenes 220]
gi|332310705|gb|EGJ23800.1| Transcriptional regulatory protein walR [Listeria monocytogenes
str. Scott A]
Length = 237
Score = 158 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|169628171|ref|YP_001701820.1| two component response transcriptional regulatory protein MprA
[Mycobacterium abscessus ATCC 19977]
gi|169240138|emb|CAM61166.1| Mycobacterial persistence regulator MrpA (two component response
transcriptional regulatory protein) [Mycobacterium
abscessus]
Length = 230
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD +R L ++L GY V +G A + + + L+ D++MP++D
Sbjct: 1 MPVRILVVDDDRAVRESLRRSLSFNGYSVDLAEDGVDALNVIANDRPDALVLDVMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 61 GLEVCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 120
>gi|311064941|ref|YP_003971667.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
gi|310867261|gb|ADP36630.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118
>gi|296169791|ref|ZP_06851406.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895585|gb|EFG75284.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 229
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALEMIASDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|229068949|ref|ZP_04202243.1| Two-component response regulator [Bacillus cereus F65185]
gi|229078583|ref|ZP_04211141.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228704727|gb|EEL57155.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228714233|gb|EEL66114.1| Two-component response regulator [Bacillus cereus F65185]
Length = 218
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|312794585|ref|YP_004027508.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312877755|ref|ZP_07737707.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311795474|gb|EFR11851.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|312181725|gb|ADQ41895.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 230
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY+V + +G A ++++ E F ++L D+++P++
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKSENFDMVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E D+ ++ IT A ++KPF +R+L+ + L
Sbjct: 61 DGFSVCKKVRE-FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|238855833|ref|ZP_04646122.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus jensenii 269-3]
gi|282933323|ref|ZP_06338706.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
208-1]
gi|313472807|ref|ZP_07813295.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
gi|238831496|gb|EEQ23844.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus jensenii 269-3]
gi|281302508|gb|EFA94727.1| transcriptional regulatory protein WalR [Lactobacillus jensenii
208-1]
gi|313448883|gb|EFR61222.1| DNA-binding response regulator VicR [Lactobacillus jensenii 1153]
Length = 237
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G+EV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+L+ V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELLARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|120610269|ref|YP_969947.1| osmolarity response regulator [Acidovorax citrulli AAC00-1]
gi|326316447|ref|YP_004234119.1| winged helix family two component transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|120588733|gb|ABM32173.1| two component transcriptional regulator, winged helix family
[Acidovorax citrulli AAC00-1]
gi|323373283|gb|ADX45552.1| two component transcriptional regulator, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 243
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+EV+ +G + + E L++ D++MP DG+
Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEVMVAEDGKALNRILLRETVELIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|46579496|ref|YP_010304.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
vulgaris str. Hildenborough]
gi|120602954|ref|YP_967354.1| two component transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|46448910|gb|AAS95563.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio
vulgaris str. Hildenborough]
gi|120563183|gb|ABM28927.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris DP4]
gi|311233311|gb|ADP86165.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris RCH1]
Length = 229
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ EDD+D+ + L L AG+EVV+ G + + L+L D+++P M G
Sbjct: 3 KERILVVEDDEDILQLLRFTLEAAGFEVVTAATGRDGLESAQRHVPGLVLLDLMLPGMSG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ R + V+ +T + KPF R+LV + +L
Sbjct: 63 FDVCRELKRTPATEHVPVIMLTARGEEVDRIVGLELGADDYVIKPFSPRELVLRIRAVLK 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|300858078|ref|YP_003783061.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|300685532|gb|ADK28454.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|302205800|gb|ADL10142.1| Putative two component system response regulator [Corynebacterium
pseudotuberculosis C231]
gi|302330359|gb|ADL20553.1| Putative two component system response regulator [Corynebacterium
pseudotuberculosis 1002]
gi|308276035|gb|ADO25934.1| two component system response regulator [Corynebacterium
pseudotuberculosis I19]
Length = 230
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +D+ +R L ++L GY+V +G A + + +E L++ D++MP MDG+E
Sbjct: 2 KIVVVDDEQAVRESLRRSLSFNGYDVFLAEDGVQALEVIEKEQPELVILDVMMPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V LL
Sbjct: 62 VCRTLRSAGDDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118
>gi|317128715|ref|YP_004094997.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315473663|gb|ADU30266.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 234
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+A+DD ++ + L + Y+VV NNG A ++L DI+MP++DG
Sbjct: 3 NIKVLVADDDPNVCEIISLYLKQNQYDVVEANNGKEAISLFESSKPDIILLDIMMPDIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ +T ++KPF R++V + +
Sbjct: 63 YEVCKEIRKK-ANVPIIMLTAKDEELDRVLGLEIGADDYVTKPFSPREVVARIKAIFRR 120
>gi|218134831|ref|ZP_03463635.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
43243]
gi|217990216|gb|EEC56227.1| hypothetical protein BACPEC_02734 [Bacteroides pectinophilus ATCC
43243]
Length = 231
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E ++ ++G +A V E L++ D+++P MDG
Sbjct: 4 KQKILIVDDDENIAELIALYLTKECFETMTVHDGEAALAAVTEFRPDLMILDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + +L ++ ++ + KPF ++LV V +L
Sbjct: 64 YQVCREVRRNN-NLPIIMLSAKGETFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|73662382|ref|YP_301163.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|72494897|dbj|BAE18218.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
Length = 236
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L +AGY V +G A +KV L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLEQAGYIVEVAYDGEEALEKVNATNPELIVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKSIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|51891553|ref|YP_074244.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855242|dbj|BAD39400.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +DD + FL ++L GY+V N+G A V P L++ DI+MP++D
Sbjct: 1 MSLRVLVVDDDPKITAFLRRSLTLEGYDVAVANSGTEALRSVTASPPDLMVLDIMMPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ +T AV+ L KPF L +L+ + L+
Sbjct: 61 GLEVCRRIRAAGETFPILMLTARDAVSDRVKGLDQGADDYLVKPFALEELLARLRA-LSR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|315181014|gb|ADT87928.1| Response regulator [Vibrio furnissii NCTC 11218]
Length = 203
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A +K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|309804121|ref|ZP_07698202.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 11V1-d]
gi|309804844|ref|ZP_07698906.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 09V1-c]
gi|312871212|ref|ZP_07731310.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 3008A-a]
gi|312872643|ref|ZP_07732708.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2062A-h1]
gi|312873308|ref|ZP_07733363.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2052A-d]
gi|312874913|ref|ZP_07734932.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2053A-b]
gi|325912258|ref|ZP_08174655.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners UPII 143-D]
gi|325913632|ref|ZP_08175994.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners UPII 60-B]
gi|308163889|gb|EFO66155.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 11V1-d]
gi|308165783|gb|EFO68004.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 09V1-c]
gi|311089658|gb|EFQ48083.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2053A-b]
gi|311091188|gb|EFQ49577.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2052A-d]
gi|311091685|gb|EFQ50064.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 2062A-h1]
gi|311093226|gb|EFQ51572.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LEAF 3008A-a]
gi|325475917|gb|EGC79086.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners UPII 143-D]
gi|325476991|gb|EGC80141.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners UPII 60-B]
Length = 234
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + DL ++ +T AA ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|295102835|emb|CBL00380.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii L2-6]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + + L +GY +G++A + + L++ D++MP MDG+
Sbjct: 3 KILIVDDEPRIRELIRENLQYSGYTCEEAGDGSAALSLLTGGGYDLVILDLMMPFMDGMS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + KPF R+LV V +L
Sbjct: 63 CLREMRTRRINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNR 119
>gi|257425615|ref|ZP_05602039.1| response regulator protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428276|ref|ZP_05604674.1| response regulator protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430913|ref|ZP_05607293.1| response regulator protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433602|ref|ZP_05609960.1| response regulator protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436515|ref|ZP_05612559.1| response regulator protein [Staphylococcus aureus subsp. aureus
M876]
gi|282914297|ref|ZP_06322083.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus M899]
gi|282924591|ref|ZP_06332259.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus C101]
gi|293503374|ref|ZP_06667221.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus 58-424]
gi|293510389|ref|ZP_06669095.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus M809]
gi|293530928|ref|ZP_06671610.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus M1015]
gi|257271309|gb|EEV03455.1| response regulator protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275117|gb|EEV06604.1| response regulator protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278343|gb|EEV08979.1| response regulator protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281695|gb|EEV11832.1| response regulator protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257283866|gb|EEV13989.1| response regulator protein [Staphylococcus aureus subsp. aureus
M876]
gi|282313426|gb|EFB43821.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus C101]
gi|282321478|gb|EFB51803.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus M899]
gi|290920196|gb|EFD97262.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus M1015]
gi|291095040|gb|EFE25305.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus 58-424]
gi|291466753|gb|EFF09273.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus M809]
Length = 247
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 125
>gi|229818366|ref|ZP_04448647.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
20098]
gi|229784236|gb|EEP20350.1| hypothetical protein BIFANG_03668 [Bifidobacterium angulatum DSM
20098]
Length = 233
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GYEV + G + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYEVSAAATGEEGLELFTHGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTTLCRRIREQ-SRVPIIMLTAKSTEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118
>gi|269120932|ref|YP_003309109.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
gi|268614810|gb|ACZ09178.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
Length = 223
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R + L G+EV +G + + + L++ D+++P+M+
Sbjct: 1 MKEKILIIEDDPKISRLIEIELKFEGFEVSFAYDGKEGLNSAKYNSYDLIILDLMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R E ++ ++ +T ++ ++KPF +L+ + L+
Sbjct: 61 GIEVCKRIRE-FSEVPIIMLTAKDEISDKVVGLDYGADDYMTKPFSNEELIARIKALIRR 119
>gi|229126083|ref|ZP_04255105.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|229143378|ref|ZP_04271809.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228640185|gb|EEK96584.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228657405|gb|EEL13221.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
Length = 242
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|119025295|ref|YP_909140.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
gi|118764879|dbj|BAF39058.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
Length = 235
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MMTRILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + +L
Sbjct: 61 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRR 119
>gi|1575577|gb|AAC44436.1| DNA-binding response regulator [Thermotoga maritima]
Length = 239
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L K GYEV+ +G A +E + + DI++P +DG
Sbjct: 3 KKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+L+ V +
Sbjct: 63 FELVRKIRSMEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|313122882|ref|YP_004033141.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphop [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312279445|gb|ADQ60164.1| Alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 242
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A +KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKGSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|242242765|ref|ZP_04797210.1| response regulator [Staphylococcus epidermidis W23144]
gi|242233901|gb|EES36213.1| response regulator [Staphylococcus epidermidis W23144]
gi|319400835|gb|EFV89054.1| transcriptional regulatory protein resD [Staphylococcus epidermidis
FRI909]
Length = 241
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E+ +G AY+ E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|312126427|ref|YP_003991301.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311776446|gb|ADQ05932.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 224
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + L G+++ NG A + + L++ DI+MPE+DG +
Sbjct: 3 RILIVDDDPHIRELVAHFLTLEGFDIYEAANGKDALNILDTVKVDLVILDIMMPEIDGWQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D+ ++ +T L KPF +LV V LL
Sbjct: 63 LCHNIRKYYGDIPILMLTVKGETNDKVKGFEVGADDYLVKPFDPIELVARVKALLRR 119
>gi|309789878|ref|ZP_07684456.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
gi|308228085|gb|EFO81735.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
Length = 231
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L L + GY VV ++G ++ R EP L++ DI++P +DG
Sbjct: 3 TILIVEDERTLAETLRYNLEREGYTVVVASDGVQGLEQARREPPDLIVLDIMLPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ ++ +T +SKPF L + + + ++
Sbjct: 63 VCRILRQE-SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARIRAIMRR 118
>gi|302190752|ref|ZP_07267006.1| two-component regulatory system response regulator [Lactobacillus
iners AB-1]
gi|309809744|ref|ZP_07703598.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners SPIN 2503V10-D]
gi|329919797|ref|ZP_08276748.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners SPIN 1401G]
gi|308169923|gb|EFO71962.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners SPIN 2503V10-D]
gi|328937144|gb|EGG33572.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners SPIN 1401G]
Length = 234
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + DL ++ +T AA ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|292492323|ref|YP_003527762.1| phosphate regulon transcriptional regulatory protein PhoB
[Nitrosococcus halophilus Nc4]
gi|291580918|gb|ADE15375.1| phosphate regulon transcriptional regulatory protein PhoB
[Nitrosococcus halophilus Nc4]
Length = 229
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R L L + GY + + A+ ++ E L+L D ++P +
Sbjct: 1 MPATILVVDDETAIREMLGFVLTQEGYNYQAAADAEQAWQRLNESHPDLILLDWMLPGIS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR L ++ +T ++KPF +L+ V +L
Sbjct: 61 GVDLARRLKREPNTRSLPLIMLTARDDEEDKVRGLNVGADDYITKPFSPTELIARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|255524384|ref|ZP_05391341.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296187507|ref|ZP_06855902.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255511941|gb|EET88224.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296048029|gb|EFG87468.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 226
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D++ MR + L K G+ V+ NG A +E L++ DI+MP MD
Sbjct: 1 MNKTILIVDDEERMRFLIDAYLKKEGFNVLQAENGKDALKIFKENTVELVVLDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ + V+ +T A ++KPF + LV +V LL
Sbjct: 61 GWTTCKEIRKI-SQVPVIMLTAKAEDEDQILGFELGTDNYVTKPFSPKLLVAKVKALLKR 119
>gi|186683295|ref|YP_001866491.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
gi|186465747|gb|ACC81548.1| response regulator receiver protein [Nostoc punctiforme PCC 73102]
Length = 125
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D+ + L L K GY V + +G SA + ++ ++L D+++PE+DG+E
Sbjct: 3 HVLLVDDEAALCESLTYTLQKEGYTVTTAADGHSAIKQFHKQVPDVILLDLMLPEVDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ ++ +T ++KPF+ R+L+ + +L ++
Sbjct: 63 VCWRIRA-FSNVPIVMLTAKDEDIDKIWGLEAGADDYITKPFNTRELLARIKAVLRRRS 120
>gi|251782003|ref|YP_002996305.1| two-component response regulator [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390632|dbj|BAH81091.1| two-component response regulator [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|323126825|gb|ADX24122.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 235
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D++ + R L LGK G+ +G A EPF +L DI++P++D
Sbjct: 1 MTKQILLVDDEEHILRLLDYHLGKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GIEVCKRLRAKGIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAILRR 120
>gi|229824452|ref|ZP_04450521.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
gi|229786053|gb|EEP22167.1| hypothetical protein GCWU000282_01775 [Catonella morbi ATCC 51271]
Length = 231
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL +D+ + + + L K GY+V + NG A D R + L++TDI+MP+MD
Sbjct: 1 MT-HILLVDDEPAILDIVTRYLSKEGYQVTTATNGQEALDHYRAQAVDLIITDIMMPQMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + +L D +FIT S L+KPF R+L V LL
Sbjct: 60 GYDFIDAVLQLREDQPFIFITAKDQAVDRIYSLTLGADDYLTKPFSPRELTLRVKNLLRR 119
>gi|146340889|ref|YP_001205937.1| OmpR family two-component transcriptional regulator [Bradyrhizobium
sp. ORS278]
gi|146193695|emb|CAL77712.1| two-component transcriptional regulator (OmpR family),
BaeR/ChvL/OmpR-like [Bradyrhizobium sp. ORS278]
Length = 231
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD +R + AL KAG V +G +A + ++ L++ D+ MPE D
Sbjct: 1 MSPRILIVDDDPHIREVVRVALSKAGMAVTEAADGRAALARFADDRPDLIVLDVGMPEFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++F++ ++KPF R+LV VN +L
Sbjct: 61 GLEVCRRIR-RTSQVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVNVILRR 119
>gi|226323502|ref|ZP_03799020.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
gi|225208186|gb|EEG90540.1| hypothetical protein COPCOM_01277 [Coprococcus comes ATCC 27758]
Length = 233
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTMIVHDGEEALTAFESYQPNLMLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRSKH-NTPIIMLSAKGEVFDKVLGLELGADDYVLKPFDSKELVARVKAVLRR 121
>gi|313889994|ref|ZP_07823631.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pseudoporcinus SPIN 20026]
gi|313121652|gb|EFR44754.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pseudoporcinus SPIN 20026]
Length = 242
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + R L L K GYE +G +A E + +L DI++P++D
Sbjct: 1 MKKQVLLVDDEEHILRLLDYHLHKEGYETELAEDGRTALKLAVSEHYDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R + +M ++ + + ++KPF R+L+ V +L
Sbjct: 61 GIEVCKRIRAKGIETPIMMVSAKSDEFDKVLALELGADDYMTKPFSPRELMARVKAILRR 120
>gi|308068866|ref|YP_003870471.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305858145|gb|ADM69933.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 233
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +MR L L K G+ V +NG+ R + +++ D++MP+MDG +
Sbjct: 5 RVLVIDDEWNMRNLLRIYLSKEGFHVTEASNGSEGLKAFRSQTHDVVVLDVMMPDMDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ E+ P + ++ +T V + KP +L+ + LL +
Sbjct: 65 VCKKMREIAP-VPILMLTARGEVKDKVLGLGIGADDYVVKPVDPEELIARIYALLRRSS 122
>gi|262404218|ref|ZP_06080773.1| putative two-component response regulator [Vibrio sp. RC586]
gi|262349250|gb|EEY98388.1| putative two-component response regulator [Vibrio sp. RC586]
Length = 236
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LGKAG+EV+ NGA + + L++ DI+MP DG
Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + ++ +T ++K F R+L+ + +L
Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121
>gi|262165983|ref|ZP_06033720.1| putative two-component response regulator [Vibrio mimicus VM223]
gi|262025699|gb|EEY44367.1| putative two-component response regulator [Vibrio mimicus VM223]
Length = 236
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LGKAG+EV+ NGA + + L++ DI+MP DG
Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETHNPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + ++ +T ++K F R+L+ + +L
Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121
>gi|219854585|ref|YP_002471707.1| hypothetical protein CKR_1242 [Clostridium kluyveri NBRC 12016]
gi|219568309|dbj|BAH06293.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 240
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL+ +D++ + + L GY+ + + G A +EE L+L D+++P M
Sbjct: 10 MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 69
Query: 60 DGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + + +M IT ++KPF +R+L+ V +
Sbjct: 70 DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 129
Query: 118 LTI 120
L
Sbjct: 130 LRR 132
>gi|254823447|ref|ZP_05228448.1| two component response transcriptional regulatory protein MprA
[Mycobacterium intracellulare ATCC 13950]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++G A + + + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALELIASDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|47231509|gb|AAT12781.1| PhoB [Alcaligenes faecalis]
Length = 236
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSTSILVVEDEPAIQELISVNLSFAGHKVLRAFDAEQAQILIRAELPDLILVDWMLPGSS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI LAR+ E + V+ +T + D ++KPF ++L+ + +L
Sbjct: 61 GINLARKLRSDERTRHIPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELIARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|148270266|ref|YP_001244726.1| two component transcriptional regulator [Thermotoga petrophila
RKU-1]
gi|170288963|ref|YP_001739201.1| two component transcriptional regulator [Thermotoga sp. RQ2]
gi|147735810|gb|ABQ47150.1| two component transcriptional regulator, winged helix family
[Thermotoga petrophila RKU-1]
gi|170176466|gb|ACB09518.1| two component transcriptional regulator, winged helix family
[Thermotoga sp. RQ2]
Length = 239
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L K GYEV+ +G A +E + + DI++P +DG
Sbjct: 3 KKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+L+ V +
Sbjct: 63 FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|108805768|ref|YP_645705.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108767011|gb|ABG05893.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL +D+ +++ L AL + G++V + +G +A + L++ DI++P++DG
Sbjct: 5 TRRILLVDDEPSLQKMLTHALEREGFQVQAVGDGEAALEAFNTFEPHLIILDIMLPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR D+ ++ +T ++KPF +R+LV V ++
Sbjct: 65 TEVCRRIRAQ-SDVPILMLTAKDDEIDRVVGLELGADDYVTKPFAVRELVARVRAIMRR 122
>gi|260436657|ref|ZP_05790627.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Synechococcus sp. WH 8109]
gi|260414531|gb|EEX07827.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Synechococcus sp. WH 8109]
Length = 272
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG
Sbjct: 32 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDG 91
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 92 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 149
>gi|332799517|ref|YP_004461016.1| winged helix family two component transcriptional regulator
[Tepidanaerobacter sp. Re1]
gi|332697252|gb|AEE91709.1| two component transcriptional regulator, winged helix family
[Tepidanaerobacter sp. Re1]
Length = 230
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ + + L + G+ V G A D + + L++ D+++P +DG
Sbjct: 4 NARILVVDDEKRIVDLVRLYLEREGFIVDEAFEGQQALDMISSVSYDLIILDLMLPVIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E D V+ +T + KPF R+L V LL
Sbjct: 64 WTVCKKIREKY-DTPVIMLTARGEEFDKVLGFELGADDYVVKPFSPRELTARVKALLRR 121
>gi|257793569|ref|ZP_05642548.1| response regulator protein [Staphylococcus aureus A9781]
gi|258407189|ref|ZP_05680337.1| response regulator protein [Staphylococcus aureus A9763]
gi|258420275|ref|ZP_05683223.1| response regulator protein [Staphylococcus aureus A9719]
gi|282908809|ref|ZP_06316627.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911128|ref|ZP_06318930.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|257787541|gb|EEV25881.1| response regulator protein [Staphylococcus aureus A9781]
gi|257841216|gb|EEV65662.1| response regulator protein [Staphylococcus aureus A9763]
gi|257843738|gb|EEV68139.1| response regulator protein [Staphylococcus aureus A9719]
gi|282324823|gb|EFB55133.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282327073|gb|EFB57368.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
Length = 244
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 122
>gi|270307586|ref|YP_003329644.1| DNA-binding response regulator, two-component system, OmpR family
[Dehalococcoides sp. VS]
gi|270153478|gb|ACZ61316.1| DNA-binding response regulator, two-component system, OmpR family
[Dehalococcoides sp. VS]
Length = 256
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD +R L L K GY + +G A R SL++ D+++P +DG
Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + + ++ +T ++ + + LSKPF +R+L+ + LL
Sbjct: 90 ELCRLIR-TESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRR 146
>gi|49483742|ref|YP_040966.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486330|ref|YP_043551.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|258437323|ref|ZP_05689307.1| response regulator protein [Staphylococcus aureus A9299]
gi|258443528|ref|ZP_05691867.1| response regulator protein [Staphylococcus aureus A8115]
gi|258446735|ref|ZP_05694889.1| response regulator protein [Staphylococcus aureus A6300]
gi|258448650|ref|ZP_05696762.1| response regulator protein [Staphylococcus aureus A6224]
gi|258451150|ref|ZP_05699185.1| response regulator protein [Staphylococcus aureus A5948]
gi|258454266|ref|ZP_05702236.1| response regulator protein [Staphylococcus aureus A5937]
gi|282892991|ref|ZP_06301225.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A8117]
gi|282904072|ref|ZP_06311960.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus C160]
gi|282905899|ref|ZP_06313754.1| two-component system OmpR family response regulator ResD
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282919266|ref|ZP_06327001.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus C427]
gi|282924741|ref|ZP_06332408.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus A9765]
gi|282928962|ref|ZP_06336549.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A10102]
gi|283958254|ref|ZP_06375705.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|49241871|emb|CAG40564.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244773|emb|CAG43209.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|257848528|gb|EEV72516.1| response regulator protein [Staphylococcus aureus A9299]
gi|257850934|gb|EEV74877.1| response regulator protein [Staphylococcus aureus A8115]
gi|257854310|gb|EEV77259.1| response regulator protein [Staphylococcus aureus A6300]
gi|257857928|gb|EEV80817.1| response regulator protein [Staphylococcus aureus A6224]
gi|257861205|gb|EEV84018.1| response regulator protein [Staphylococcus aureus A5948]
gi|257863545|gb|EEV86303.1| response regulator protein [Staphylococcus aureus A5937]
gi|282317076|gb|EFB47450.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus C427]
gi|282331191|gb|EFB60705.1| two-component system OmpR family response regulator ResD
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282589369|gb|EFB94460.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A10102]
gi|282592748|gb|EFB97754.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus A9765]
gi|282595690|gb|EFC00654.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus C160]
gi|282764309|gb|EFC04435.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A8117]
gi|283790403|gb|EFC29220.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus A017934/97]
Length = 247
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 7 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 67 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 125
>gi|303241663|ref|ZP_07328161.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302590778|gb|EFL60528.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 231
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+ ++ L L K G++ + N+G A + +E L+L DI++P++D
Sbjct: 1 MNAKILIVDDEKNIVDILKFNLVKEGFQTIEANDGEQAIECALKEKPDLILLDIMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ + ++ IT ++KPF R+L+ V L
Sbjct: 61 GFTVCRKLRQ-TISTPIIMITAKEEEVDKVLGLELGADDYITKPFSTRELMARVKANLRR 119
>gi|251800213|ref|YP_003014944.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247547839|gb|ACT04858.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 255
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + L L K G++V+ +G A EE L+L D+++P D
Sbjct: 1 MHGKILVVDDEQPIADILKFNLEKEGHQVICAFDGGEAVRLAFEEQPDLILLDLMLPVKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +T ++KPF R+L+ V L
Sbjct: 61 GMDVCREVRTRL-HMPIIMLTAKDTEIDKVLGLELGADDYVTKPFSTRELLARVKAHLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|157962787|ref|YP_001502821.1| two component transcriptional regulator [Shewanella pealeana ATCC
700345]
gi|157847787|gb|ABV88286.1| two component transcriptional regulator, winged helix family
[Shewanella pealeana ATCC 700345]
Length = 229
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + GY V+ + SA D + E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGYTTVAAEDYDSALDMLTEPYPDLVLLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + ++
Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|303256046|ref|ZP_07342068.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae BS455]
gi|302596962|gb|EFL64086.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Streptococcus pneumoniae BS455]
Length = 235
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +D++ + + L L K G+ NG A EPF +L DI++P++D
Sbjct: 1 MTKQVLLVDDEEHVLKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R +M ++ + + L+KPF R+L+ V +L
Sbjct: 61 GMEVCKRLRAKGVKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRR 120
>gi|227873346|ref|ZP_03991607.1| response regulator [Oribacterium sinus F0268]
gi|227840824|gb|EEJ51193.1| response regulator [Oribacterium sinus F0268]
Length = 244
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD + + L K Y+ C +G A + +EP +L++ D+++P +DG
Sbjct: 4 KQKILIVDDDSSIAELVSLYLEKECYDTRICEDGEEALKSLEKEPVALIILDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR ++ ++ ++ + KPF ++LV V +L
Sbjct: 64 YEVCRRIR-TSSNVPIIMLSAKGETFDKVLGLELGADDYMLKPFDTKELVARVKAVLRR 121
>gi|254505752|ref|ZP_05117898.1| two-component system response regulator [Vibrio parahaemolyticus
16]
gi|219551405|gb|EED28384.1| two-component system response regulator [Vibrio parahaemolyticus
16]
Length = 235
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + ++++ L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVIGAGNGREMWQQLKKHTPDLIILDIMMPGDDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ D + ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLR-RDSQIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|150015424|ref|YP_001307678.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149901889|gb|ABR32722.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 225
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DDD +R + L G+ V NG A +K+ EE L + DI+MP+MD
Sbjct: 1 MN-KILVIDDDDYIRELICTVLKDEGFSVAEAVNGRDALEKLGEEKIDLCVLDIMMPQMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E ++A D+ ++ +T + ++ L+KPF + +L+ + LL
Sbjct: 60 GYEFCKQARRYYEDMPILMLTAKSELSQKVKGFELGTDDYLTKPFEIDELLVRIKALLRR 119
>gi|291619427|ref|YP_003522169.1| CpxR [Pantoea ananatis LMG 20103]
gi|291154457|gb|ADD79041.1| CpxR [Pantoea ananatis LMG 20103]
Length = 267
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EVV ++G A + + + LLL D++MP+ +
Sbjct: 36 MN-KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKN 93
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 94 GIDTLKELRQQY-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 152
Query: 121 KN 122
N
Sbjct: 153 SN 154
>gi|254520519|ref|ZP_05132575.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
gi|226914268|gb|EEH99469.1| two-component system response regulator [Clostridium sp. 7_2_43FAA]
Length = 228
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN + +L+ +DD+++ + L AGYE C+NG A + L+L DI++P
Sbjct: 1 MNNRLGKVLIVDDDENICEVINMYLISAGYETRRCHNGREACAVFGDFKPDLVLLDIMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DGIE+ + + ++ V+ +T + + KPF ++L+ V +
Sbjct: 61 GVDGIEVLKWIRK-SSEIPVIMLTAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAV 119
Query: 118 LTIKN 122
+ N
Sbjct: 120 MRRYN 124
>gi|163802258|ref|ZP_02196153.1| osmolarity response regulator [Vibrio sp. AND4]
gi|159174063|gb|EDP58873.1| osmolarity response regulator [Vibrio sp. AND4]
Length = 146
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNTLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|328956405|ref|YP_004373791.1| two-component response regulator [Carnobacterium sp. 17-4]
gi|328672729|gb|AEB28775.1| two-component response regulator [Carnobacterium sp. 17-4]
Length = 235
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+ DG+
Sbjct: 2 KKILVVDDEKPISDIVKFNLTKEGYEVFTAYDGEEALEKVEEVLPDLIILDLMLPKKDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L V L +
Sbjct: 62 EVCREVRKNH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELTARVKANLRRHD 120
>gi|257061994|ref|YP_003139882.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|256592160|gb|ACV03047.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 224
Score = 157 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L +L + Y V +G + + P+ L+L D+++P++DGI
Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + + V+ +T + KPF L +L + LL N
Sbjct: 62 LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120
>gi|228970770|ref|ZP_04131410.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228788895|gb|EEM36834.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 242
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V N+G A + + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|224283668|ref|ZP_03646990.1| Putative response regulator [Bifidobacterium bifidum NCIMB 41171]
gi|313140824|ref|ZP_07803017.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
gi|313133334|gb|EFR50951.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
Length = 234
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + +G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAASGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVLRR 118
>gi|254247533|ref|ZP_04940854.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
gi|124872309|gb|EAY64025.1| hypothetical protein BCPG_02334 [Burkholderia cenocepacia PC184]
Length = 256
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 76 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 135
Query: 121 K 121
+
Sbjct: 136 R 136
>gi|332523446|ref|ZP_08399698.1| transcriptional regulatory protein WalR [Streptococcus porcinus
str. Jelinkova 176]
gi|332314710|gb|EGJ27695.1| transcriptional regulatory protein WalR [Streptococcus porcinus
str. Jelinkova 176]
Length = 236
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++++ +G A E+ L++ D+++PEMDG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIMTAFDGREAITIFEEDKPDLVILDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|329936036|ref|ZP_08285836.1| two component response regulator [Streptomyces griseoaurantiacus
M045]
gi|329304514|gb|EGG48392.1| two component response regulator [Streptomyces griseoaurantiacus
M045]
Length = 249
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +LLAEDD +R L +AL GYEV + +G A P +LL D++MP +D
Sbjct: 1 MTQTVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAHAHRTPPDVLLLDVMMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T A + KPF + ++ + LL
Sbjct: 61 GLQVCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 120
>gi|260664969|ref|ZP_05865819.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii SJ-7A-US]
gi|260561023|gb|EEX26997.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus jensenii SJ-7A-US]
Length = 237
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G+EV + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFEVDTAYDGEEAVKKVNEIDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|116628742|ref|YP_813914.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
gi|238852956|ref|ZP_04643355.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus gasseri 202-4]
gi|282852390|ref|ZP_06261732.1| response regulator receiver domain protein [Lactobacillus gasseri
224-1]
gi|300362620|ref|ZP_07058796.1| response regulator [Lactobacillus gasseri JV-V03]
gi|116094324|gb|ABJ59476.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus gasseri ATCC 33323]
gi|238834406|gb|EEQ26644.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus gasseri 202-4]
gi|282556132|gb|EFB61752.1| response regulator receiver domain protein [Lactobacillus gasseri
224-1]
gi|300353611|gb|EFJ69483.1| response regulator [Lactobacillus gasseri JV-V03]
Length = 235
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|325963934|ref|YP_004241840.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
gi|323470021|gb|ADX73706.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
Length = 224
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+E V C +GA A D R L+L D+++P MD
Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDVFRSSRPDLVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R+ D+ ++ +T + + + KPF +LV V L
Sbjct: 61 GIEVCRQVRAE-SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 118
>gi|160942928|ref|ZP_02090167.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
M21/2]
gi|158445829|gb|EDP22832.1| hypothetical protein FAEPRAM212_00405 [Faecalibacterium prausnitzii
M21/2]
gi|295103906|emb|CBL01450.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 228
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + + L AGY +G++A ++ F L++ D++MP MDG+
Sbjct: 3 KILIVDDEPRIRELIHEHLQYAGYICEEAGDGSAALAQLSGGGFDLVILDLMMPFMDGMT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + KPF R+LV V +L
Sbjct: 63 CLREMRARHINTPVIILTARGEEYDKLAGLESGADDYVVKPFSPRELVARVRAVLNR 119
>gi|15924482|ref|NP_372016.1| staphylococcal respiratory response protein [Staphylococcus aureus
subsp. aureus Mu50]
gi|15927073|ref|NP_374606.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
aureus N315]
gi|21283175|ref|NP_646263.1| respiratory response protein SrrA [Staphylococcus aureus subsp.
aureus MW2]
gi|57650448|ref|YP_186377.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus COL]
gi|87161890|ref|YP_494138.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88195297|ref|YP_500101.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|148267976|ref|YP_001246919.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150394041|ref|YP_001316716.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|151221612|ref|YP_001332434.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979811|ref|YP_001442070.1| staphylococcal respiratory response protein [Staphylococcus aureus
subsp. aureus Mu3]
gi|161509721|ref|YP_001575380.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221140087|ref|ZP_03564580.1| response regulator protein [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253314860|ref|ZP_04838073.1| response regulator protein [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253733260|ref|ZP_04867425.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|255006278|ref|ZP_05144879.2| response regulator protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|262049079|ref|ZP_06021956.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus D30]
gi|262053233|ref|ZP_06025384.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus 930918-3]
gi|269203119|ref|YP_003282388.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus ED98]
gi|282916758|ref|ZP_06324516.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus D139]
gi|283770563|ref|ZP_06343455.1| transcriptional regulatory protein srrA [Staphylococcus aureus
subsp. aureus H19]
gi|284024552|ref|ZP_06378950.1| response regulator protein [Staphylococcus aureus subsp. aureus
132]
gi|294848522|ref|ZP_06789268.1| response regulator protein [Staphylococcus aureus A9754]
gi|295406612|ref|ZP_06816417.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A8819]
gi|296276358|ref|ZP_06858865.1| response regulator protein [Staphylococcus aureus subsp. aureus
MR1]
gi|297207788|ref|ZP_06924223.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297245804|ref|ZP_06929669.1| two-component system [Staphylococcus aureus A8796]
gi|297590964|ref|ZP_06949602.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|300911869|ref|ZP_07129312.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|304380921|ref|ZP_07363581.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|76363418|sp|Q5HFT0|SRRA_STAAC RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363419|sp|Q7A2R6|SRRA_STAAM RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363420|sp|Q7A5H6|SRRA_STAAN RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363421|sp|Q6GGK6|SRRA_STAAR RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363422|sp|Q6G972|SRRA_STAAS RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363423|sp|Q9L524|SRRA_STAAU RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|76363424|sp|Q7A0U4|SRRA_STAAW RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|123291792|sp|Q2FY79|SRRA_STAA8 RecName: Full=Transcriptional regulatory protein srrA; AltName:
Full=Staphylococcal respiratory response protein A
gi|11995653|gb|AAF70312.2|AF260326_1 SrrA [Staphylococcus aureus]
gi|13701291|dbj|BAB42585.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus subsp. aureus N315]
gi|14247263|dbj|BAB57654.1| staphylococcal respiratory response protein [Staphylococcus aureus
subsp. aureus Mu50]
gi|21204615|dbj|BAB95311.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus subsp. aureus MW2]
gi|37781574|gb|AAP35031.1| SrrA [Staphylococcus aureus]
gi|57284634|gb|AAW36728.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus COL]
gi|87127864|gb|ABD22378.1| staphylococcal respiratory response protein, SrrA [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87202855|gb|ABD30665.1| DNA-binding response regulator, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147741045|gb|ABQ49343.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus JH9]
gi|149946493|gb|ABR52429.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|150374412|dbj|BAF67672.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721946|dbj|BAF78363.1| staphylococcal respiratory response protein [Staphylococcus aureus
subsp. aureus Mu3]
gi|160368530|gb|ABX29501.1| response regulator SrrA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253728800|gb|EES97529.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|259158872|gb|EEW43965.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus 930918-3]
gi|259162748|gb|EEW47313.1| staphylococcal respiratory response protein SrrA [Staphylococcus
aureus D30]
gi|262075409|gb|ACY11382.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus ED98]
gi|269940984|emb|CBI49368.1| transcriptional regulatory protein SrrA [Staphylococcus aureus
subsp. aureus TW20]
gi|282319245|gb|EFB49597.1| two-component system, OmpR family, response regulator ResD
[Staphylococcus aureus subsp. aureus D139]
gi|283460710|gb|EFC07800.1| transcriptional regulatory protein srrA [Staphylococcus aureus
subsp. aureus H19]
gi|283470771|emb|CAQ49982.1| transcriptional regulatory protein ResD [Staphylococcus aureus
subsp. aureus ST398]
gi|285817173|gb|ADC37660.1| Staphylococcal respiratory response protein SrrA [Staphylococcus
aureus 04-02981]
gi|294824548|gb|EFG40971.1| response regulator protein [Staphylococcus aureus A9754]
gi|294968359|gb|EFG44383.1| transcriptional regulatory protein srrA [Staphylococcus aureus
A8819]
gi|296887805|gb|EFH26703.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297177455|gb|EFH36707.1| two-component system [Staphylococcus aureus A8796]
gi|297575850|gb|EFH94566.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|298694776|gb|ADI97998.1| DNA-binding response regulator SrrA [Staphylococcus aureus subsp.
aureus ED133]
gi|300886115|gb|EFK81317.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|302333164|gb|ADL23357.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus JKD6159]
gi|302751324|gb|ADL65501.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus str. JKD6008]
gi|304340648|gb|EFM06582.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438040|gb|ADQ77111.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
gi|312829881|emb|CBX34723.1| transcriptional regulatory protein resD [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315129765|gb|EFT85755.1| response regulator protein [Staphylococcus aureus subsp. aureus
CGS03]
gi|315195389|gb|EFU25776.1| response regulator protein [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198817|gb|EFU29145.1| response regulator protein [Staphylococcus aureus subsp. aureus
CGS01]
gi|320140624|gb|EFW32478.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144160|gb|EFW35929.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|329314170|gb|AEB88583.1| Transcriptional regulatory protein srrA [Staphylococcus aureus
subsp. aureus T0131]
gi|329725283|gb|EGG61770.1| transcriptional regulatory protein ResD [Staphylococcus aureus
subsp. aureus 21189]
gi|329727544|gb|EGG64000.1| transcriptional regulatory protein ResD [Staphylococcus aureus
subsp. aureus 21172]
gi|329730829|gb|EGG67207.1| transcriptional regulatory protein ResD [Staphylococcus aureus
subsp. aureus 21193]
Length = 241
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 61 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|312197681|ref|YP_004017742.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229017|gb|ADP81872.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 239
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G++VV+ +G A +V LL+ DI++P+ DG+E
Sbjct: 7 RLLVVDDEPNILDMLRMALRFHGFDVVTARSGHEATAEVTARRPDLLVLDIMLPDGDGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E ++ V+F+T A ++KPF + +LV + +L
Sbjct: 67 LCRRWREQGVEVPVVFLTARDRHADKIAGLTYGGDDYVTKPFSIDELVARIRAVLRR 123
>gi|254508241|ref|ZP_05120365.1| response regulator receiver domain protein [Vibrio parahaemolyticus
16]
gi|219548858|gb|EED25859.1| response regulator receiver domain protein [Vibrio parahaemolyticus
16]
Length = 1111
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ R L L GY V + +G A++K+ E L+L DI+MP M G ++
Sbjct: 708 LVVDDEPVNLRVLDSFLRLEGYRVQTAKDGLEAFEKLEAEKPELVLLDIMMPGMSGYQVC 767
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + L V+ +T LSKPF+ ++L + LT
Sbjct: 768 EKLRQDYDHAQLPVIMLTALNQADDRLRGFEAGANDYLSKPFNKQELAARIRAHLT 823
>gi|281412572|ref|YP_003346651.1| two component transcriptional regulator, winged helix family
[Thermotoga naphthophila RKU-10]
gi|281373675|gb|ADA67237.1| two component transcriptional regulator, winged helix family
[Thermotoga naphthophila RKU-10]
Length = 239
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L K GYEV+ +G A +E + + DI++P +DG
Sbjct: 3 KKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+L+ V +
Sbjct: 63 FELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAVFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|229917477|ref|YP_002886123.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229468906|gb|ACQ70678.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 236
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + L L K GY+V +G A KV E L+L DI++P D
Sbjct: 1 MDRTILVVDDEQPIADILKFKLEKEGYQVHVAYDGEEALVKVEEIQPDLILLDIMLPLKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V +
Sbjct: 61 GMEVCREVRKKY-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSSRELLARVKANMRR 119
>gi|28210522|ref|NP_781466.1| two-component response regulator [Clostridium tetani E88]
gi|28202959|gb|AAO35403.1| two-component response regulator [Clostridium tetani E88]
Length = 233
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ I++ +D+ ++R + L GY V+ NG A + + +E L++ DI+MP M
Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E ++ ++ ++ ++KPF+ +L+ V L
Sbjct: 61 DGIEACTKIREE-KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254227379|ref|ZP_04920811.1| response regulator receiver domain protein [Vibrio sp. Ex25]
gi|262396356|ref|YP_003288209.1| putative two-component response regulator [Vibrio sp. Ex25]
gi|151939991|gb|EDN58817.1| response regulator receiver domain protein [Vibrio sp. Ex25]
gi|262339950|gb|ACY53744.1| putative two-component response regulator [Vibrio sp. Ex25]
Length = 235
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGGVMWQLLNDHHPDLIILDIMMPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + D+ ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLRK-NSDVPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|229825123|ref|ZP_04451192.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
49176]
gi|229790495|gb|EEP26609.1| hypothetical protein GCWU000182_00474 [Abiotrophia defectiva ATCC
49176]
Length = 229
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + + L + G EV + +G A + V+ + ++L D+++P+M+
Sbjct: 1 MARKILVVDDEKLIVKGIRFGLEQDGMEVDAAYDGEEALEMVKSCAYDIILLDLMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ +T ++KPF++ ++ + +L
Sbjct: 61 GFEVCQQIRE-FSDVPIIMLTAKGEDIDKIMGLEYGADDYMTKPFNILEVKARIKAILRR 119
>gi|254410153|ref|ZP_05023933.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196183189|gb|EDX78173.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 237
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +R L +AL GY+V ++GA A + + P L+++D++MPEMDGI
Sbjct: 2 KKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDGI 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR + +F++G + ++ L KP + R+L ++ L
Sbjct: 62 EFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNPRELAAKIEAQLER 121
>gi|28901520|ref|NP_801175.1| putative two-component response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|260363072|ref|ZP_05775941.1| response regulator GltR [Vibrio parahaemolyticus K5030]
gi|260880359|ref|ZP_05892714.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
gi|260894726|ref|ZP_05903222.1| protein GltR [Vibrio parahaemolyticus Peru-466]
gi|260900076|ref|ZP_05908471.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
gi|28810067|dbj|BAC63008.1| putative two-component response regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|308089446|gb|EFO39141.1| protein GltR [Vibrio parahaemolyticus Peru-466]
gi|308091700|gb|EFO41395.1| response regulator GltR [Vibrio parahaemolyticus AN-5034]
gi|308110048|gb|EFO47588.1| response regulator GltR [Vibrio parahaemolyticus AQ4037]
gi|308112437|gb|EFO49977.1| response regulator GltR [Vibrio parahaemolyticus K5030]
Length = 235
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + D+ ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|23099274|ref|NP_692740.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
gi|22777503|dbj|BAC13775.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
Length = 238
Score = 157 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+D +RR + L K +E+ +G A +K + +++ DI+MPE DG
Sbjct: 4 THKILVVDDEDRIRRLIKMYLEKEDFEIDEAADGDVALEKALANDYDVIILDIMMPEKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ + + D V+ +T + + KPF R+ V V LL
Sbjct: 64 IEVCKELRKE-KDTPVIMLTAKGEESNRVQGFEVGADDYIVKPFSPREAVLRVKALLRR 121
>gi|269957713|ref|YP_003327502.1| winged helix family two component transcriptional regulator
[Xylanimonas cellulosilytica DSM 15894]
gi|269306394|gb|ACZ31944.1| two component transcriptional regulator, winged helix family
[Xylanimonas cellulosilytica DSM 15894]
Length = 243
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P+MDG
Sbjct: 8 RLVVVDDEPNIRELLSTSLRFAGFEVHAAADGRSALQLVRDLEPDLVVLDVMLPDMDGFT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+F+T ++KPF L ++V + +L
Sbjct: 68 VTRRMRETGRHTPVVFLTAKDDTQDKVQGLTVGGDDYVTKPFSLEEVVARIRAVLRR 124
>gi|239815564|ref|YP_002944474.1| osmolarity response regulator [Variovorax paradoxus S110]
gi|239802141|gb|ACS19208.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
Length = 243
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +DD +R L + L + G+EV+ +G + + + L++ D++MP DG+
Sbjct: 10 KIVIVDDDARIRDLLRRYLTQEGFEVIVAEDGKALNRILLRDTVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ V+ +L +
Sbjct: 70 VCRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARVHAVLRRR 127
>gi|108805802|ref|YP_645739.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108767045|gb|ABG05927.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 225
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + R L L GYEV +G +++ DI++P MDG+
Sbjct: 6 RILVVEDDPSIARLLQLELEHRGYEVCCAADGEEGLAAFERLRPDVVVLDIMLPGMDGVG 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+ +T A S L+KPF + +L+ + +L
Sbjct: 66 VLRRLREAGHRTPVIMLTARDATGDKVHSLDRGADDYLTKPFEVEELLARMRAVLRR 122
>gi|255519927|ref|ZP_05387164.1| two-component response regulator [Listeria monocytogenes FSL
J1-175]
Length = 225
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T +A ++KPF +L+ + LL
Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDTLADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|90409613|ref|ZP_01217630.1| putative DNA-binding response regulator [Photobacterium profundum
3TCK]
gi|90328966|gb|EAS45223.1| putative DNA-binding response regulator [Photobacterium profundum
3TCK]
Length = 241
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +DD ++R L + L K+G+ V + G ++ L+L D++MP DG
Sbjct: 4 NKKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLASGYPDLILMDVMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D+ ++ +T + ++KPF R L+ + LL
Sbjct: 64 FTLCQYIRK-TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121
>gi|51891828|ref|YP_074519.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855517|dbj|BAD39675.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 225
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+A+D+ ++ L L GY V G A +VR+ F ++ D+++P M G
Sbjct: 4 QHILVADDEPELIEILTDYLEAEGYAVTGVETGEEAVARVRDGAFDCVVLDVMLPGMSGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R D+ ++F++ A ++KPF ++V V LL
Sbjct: 64 EACRAIRA-FSDVPILFLSARGEDADKIRGLGLGGDDYVAKPFSPPEVVARVKALLRR 120
>gi|320091489|gb|ADW08982.1| SW-degrading-related protein 7 [Arthrobacter sp. HW08]
Length = 227
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +L+ +DD D+R L L AGY+V S +G A + V LL+ D+VMP
Sbjct: 1 MTEPITVLVVDDDPDIRSSLQSLLEAAGYQVESAADGREALEWVAATSPDLLVADVVMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ L R + ++ +T + VA LSKPF +L+ + +
Sbjct: 61 MDGLGLCRMLRAAGNAVPILLLTARSDVADCVAGLDAGADDYLSKPFEPDELLARLRAMA 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229187114|ref|ZP_04314262.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BGSC 6E1]
gi|228596355|gb|EEK54027.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BGSC 6E1]
Length = 248
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 17 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 76
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 77 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 135
Query: 120 I 120
Sbjct: 136 R 136
>gi|83310469|ref|YP_420733.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82945310|dbj|BAE50174.1| Response regulator [Magnetospirillum magneticum AMB-1]
Length = 240
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L K GY V +G A + E L+L D ++P + GIE+
Sbjct: 14 VLVVEDEAALATMLRYNLEKEGYRVAEAADGEEALTVLAERKPDLVLLDWMLPSLSGIEI 73
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ +L ++ +T L+KPF L +L+ V LL
Sbjct: 74 CRQIRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYLTKPFSLPELMARVRALLRR 131
>gi|152974106|ref|YP_001373623.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022858|gb|ABS20628.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 238
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++L+A+D+ ++R L K L + Y V + +G A ++L++ D++MP++
Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ RR ++ ++ +T + ++KPF + +++ + L+
Sbjct: 61 DGIEVCRRLRNNT-NIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|196247939|ref|ZP_03146641.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|196212723|gb|EDY07480.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 224
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + L G + NG A D + L++ DI+MPEMDG E
Sbjct: 3 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D D+ ++ +T + L KPF +LV V LL
Sbjct: 63 LCRELRDYD-DVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKR 118
>gi|197250808|ref|YP_002145379.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197214511|gb|ACH51908.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Agona str.
SL483]
Length = 229
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254251724|ref|ZP_04945042.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
gi|124894333|gb|EAY68213.1| hypothetical protein BDAG_00920 [Burkholderia dolosa AUO158]
Length = 256
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 16 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 75
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 76 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 135
Query: 121 K 121
+
Sbjct: 136 R 136
>gi|158320425|ref|YP_001512932.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140624|gb|ABW18936.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 237
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D++ + + L K GY+V+ C NG ++ L++ D+++P MDG
Sbjct: 6 NKTILVVDDEEHILELIRFNLEKEGYDVLLCENGDECIPMIQNNKVDLVVLDLMLPGMDG 65
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I++ ++ +D +L ++ +T + ++KPF +R+L+ + +L
Sbjct: 66 IQICKKLNRMDEYENLPIIMLTAKSEETDRVLGLELGADDYITKPFSVRELIARIRAVLR 125
Query: 120 I 120
Sbjct: 126 R 126
>gi|15903150|ref|NP_358700.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
gi|182684045|ref|YP_001835792.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
gi|15458732|gb|AAK99910.1| Response regulator [Streptococcus pneumoniae R6]
gi|182629379|gb|ACB90327.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
Length = 251
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 19 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 79 EVAKTIRK-TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135
>gi|323465648|gb|ADX69335.1| Alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Lactobacillus helveticus H10]
Length = 238
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|199597241|ref|ZP_03210672.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
gi|199591757|gb|EDY99832.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
Length = 234
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L Y+V + +G A DKVR EPF ++ D+++P + G+
Sbjct: 2 KKILIVDDEPAILTLLQYNLEAEHYQVETATDGQEALDKVRSEPFDFIILDLMLPSLSGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + E +M +T ++KPF R+++ + + ++
Sbjct: 62 DVTCKIREEKIQTPIMILTAKDNETDKIVGLELGADDYVTKPFSPREIIARIKA-IERRS 120
>gi|309807854|ref|ZP_07701786.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 01V1-a]
gi|308168956|gb|EFO71042.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus iners LactinV 01V1-a]
Length = 244
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D
Sbjct: 11 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + DL ++ +T AA ++KPF R+LV V L
Sbjct: 71 GLEVAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 129
Query: 121 K 121
+
Sbjct: 130 R 130
>gi|27382730|ref|NP_774259.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
gi|27355902|dbj|BAC52884.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 234
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + AL KAG +V+ +G A + + L++ D+ MPE D
Sbjct: 1 MAHRILIVDDEGHIREVIRVALKKAGMDVIEARDGKEALARFAADRPDLIVLDVGMPEFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + D+ ++F++ ++KPF R+LV VN +L
Sbjct: 61 GLDVCREIRK-GSDVPILFLSARDEEIDRVLGLEIGGDDYVTKPFSPRELVARVNVILRR 119
>gi|288956869|ref|YP_003447210.1| two-component response regulator [Azospirillum sp. B510]
gi|288909177|dbj|BAI70666.1| two-component response regulator [Azospirillum sp. B510]
Length = 248
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+ L L K G+ V + ++G A E+ ++L D ++P M G+E+
Sbjct: 23 VLIVEDEADILTLLKYNLEKEGFRVATASDGEEALLAAGEQTPHIVLLDWMLPLMSGLEV 82
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D+ ++ +T ++KPF +LV + +L
Sbjct: 83 CRQLRRNAKTRDIPIIMLTARGEEGDRVRGLNSGADDYITKPFSPTELVARMRAVLRR 140
>gi|229014964|ref|ZP_04172045.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|228746314|gb|EEL96236.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 228
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A L+KPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119
>gi|194476778|ref|YP_002048957.1| two-component response regulator [Paulinella chromatophora]
gi|171191785|gb|ACB42747.1| two-component response regulator [Paulinella chromatophora]
Length = 248
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ ++GA A + L++ D++MP +DG
Sbjct: 8 KETILIVDDEASIRRILEARLSMIGYQVVTASDGAEALEAFHRCEPDLVVLDVMMPRLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA L KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYLIKPFSPKELEARIRCVLRR 125
>gi|117617627|ref|YP_854723.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117559034|gb|ABK35982.1| transcriptional regulatory protein CpxR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 231
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ + L + L G++V +G + E+ F+L+L D++MP+++G
Sbjct: 2 HKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQLLAEQHFNLVLLDVMMPKLNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D V+ +T + L+KPF R+L+ V +L
Sbjct: 62 AMLARLRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 118
>gi|41407014|ref|NP_959850.1| hypothetical protein MAP0916 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464125|ref|YP_880347.1| two component response transcriptional regulator MprA
[Mycobacterium avium 104]
gi|254773974|ref|ZP_05215490.1| two component response transcriptional regulatory protein MprA
[Mycobacterium avium subsp. avium ATCC 25291]
gi|81700688|sp|Q742C1|MPRA_MYCPA RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|160012422|sp|A0QBQ9|MPRA_MYCA1 RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|41395365|gb|AAS03233.1| hypothetical protein MAP_0916 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118165412|gb|ABK66309.1| mycobacterial persistence regulator mrpa [Mycobacterium avium 104]
Length = 228
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|27468094|ref|NP_764731.1| staphylococcal respiratory response protein SrrA [Staphylococcus
epidermidis ATCC 12228]
gi|57866959|ref|YP_188632.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
RP62A]
gi|251810909|ref|ZP_04825382.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|282876082|ref|ZP_06284949.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|293366547|ref|ZP_06613224.1| DNA-binding response regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315640|gb|AAO04775.1|AE016748_9 staphylococcal respiratory response protein SrrA [Staphylococcus
epidermidis ATCC 12228]
gi|57637617|gb|AAW54405.1| DNA-binding response regulator SrrA [Staphylococcus epidermidis
RP62A]
gi|251805589|gb|EES58246.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|281295107|gb|EFA87634.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|291319316|gb|EFE59685.1| DNA-binding response regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725454|gb|EGG61937.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
VCU144]
gi|329735293|gb|EGG71585.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
VCU045]
gi|329737131|gb|EGG73385.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
VCU028]
Length = 241
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E+ +G AY+ E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFEIHEARDGKEAYELALENNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|186686341|ref|YP_001869537.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468793|gb|ACC84594.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 241
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L GY+VV+ ++G A R L++ D++MP++DG
Sbjct: 7 KILVVDDEASIRRILETRLSMIGYDVVTASDGEEALSTFRVSTPDLIVLDVMMPKLDGYG 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA ++KPF ++L + +L
Sbjct: 67 VCQELRKE-SDVPIIMLTALGNVADRITGLELGADDYMTKPFSPKELEARIACILRR 122
>gi|322411361|gb|EFY02269.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 235
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D++ + R L L K G+ +G A EPF +L DI++P +D
Sbjct: 1 MTKQILLVDDEEHILRLLDYHLSKEGFSTQLVTDGRKALTLAETEPFDFILLDIMLPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R +M ++ + + L+KPF R+LV V +L
Sbjct: 61 GIEVCKRLRAKAIKTPIMMVSAKSDEFDKVLALELGADDYLTKPFSPRELVARVKAILRR 120
>gi|254470779|ref|ZP_05084182.1| two-component response regulator [Pseudovibrio sp. JE062]
gi|211959921|gb|EEA95118.1| two-component response regulator [Pseudovibrio sp. JE062]
Length = 233
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + A+ KA Y + NG A +++P L++ DI MPEMDG E+
Sbjct: 4 ILVVDDDAHIREVITFAIEKANYNTIIAENGFEAVACFKQQPVDLIILDIGMPEMDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ ++F++ ++KPF R+LV + +L N
Sbjct: 64 CREIRK-HSEVPILFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARIGAILKRTN 120
>gi|33866776|ref|NP_898335.1| two-component response regulator [Synechococcus sp. WH 8102]
gi|33639377|emb|CAE08761.1| two-component response regulator [Synechococcus sp. WH 8102]
Length = 248
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFENTAPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|262171161|ref|ZP_06038839.1| putative two-component response regulator [Vibrio mimicus MB-451]
gi|261892237|gb|EEY38223.1| putative two-component response regulator [Vibrio mimicus MB-451]
Length = 236
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG
Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + ++ +T ++K F R+L+ + +L
Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121
>gi|260102098|ref|ZP_05752335.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
gi|260084098|gb|EEW68218.1| DNA-binding response regulator [Lactobacillus helveticus DSM 20075]
Length = 238
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDEYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|259500798|ref|ZP_05743700.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
gi|315654109|ref|ZP_07907025.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
gi|259167492|gb|EEW51987.1| DNA-binding response regulator [Lactobacillus iners DSM 13335]
gi|315488805|gb|EFU78451.1| DNA-binding response regulator [Lactobacillus iners ATCC 55195]
Length = 244
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GYEV + +G A KV E L++ D+++P+ D
Sbjct: 11 MPKKILIVDDEKTISDIIKFNLTKEGYEVDTAYDGEEAVKKVDEFNPDLMILDLMLPKKD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + DL ++ +T AA ++KPF R+LV V L
Sbjct: 71 GLEVAREVRQSH-DLSIIMVTAKAAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 129
Query: 121 K 121
+
Sbjct: 130 R 130
>gi|330685981|gb|EGG97604.1| transcriptional regulatory protein ResD [Staphylococcus epidermidis
VCU121]
Length = 241
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E ++G AY E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEASDGKEAYQLAMENDYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVATQLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|153953971|ref|YP_001394736.1| PhoB [Clostridium kluyveri DSM 555]
gi|146346852|gb|EDK33388.1| PhoB [Clostridium kluyveri DSM 555]
Length = 231
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL+ +D++ + + L GY+ + + G A +EE L+L D+++P M
Sbjct: 1 MSKEKILIVDDEEHICELIKFNLENNGYKTIIASEGMEALKIAKEERPKLILLDVMLPGM 60
Query: 60 DGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + + +M IT ++KPF +R+L+ V +
Sbjct: 61 DGYDVCKEIRKDESIASTPIMMITARGEEFDKVLGLELGADDYITKPFSVRELLARVKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|116513324|ref|YP_812230.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116092639|gb|ABJ57792.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 242
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A +KV E LL+ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLIKEGFDVETAYDGEEAVEKVEECNPDLLILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|227487786|ref|ZP_03918102.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227542427|ref|ZP_03972476.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
gi|227092288|gb|EEI27600.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227181625|gb|EEI62597.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
Length = 230
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ +R L ++L GYEVV +GA A + + +E +L++ D++MP+MDG+E
Sbjct: 2 KILVADDEQAVRESLRRSLTFNGYEVVLAEDGAQAVELIEKEQPTLVILDVMMPQMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V L
Sbjct: 62 VCRTLRSTGDDRPILLLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLFRR 118
>gi|187778876|ref|ZP_02995349.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
15579]
gi|187772501|gb|EDU36303.1| hypothetical protein CLOSPO_02471 [Clostridium sporogenes ATCC
15579]
Length = 232
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L GYE + NG A + V+EE L+L D+++P MDG
Sbjct: 4 EKILIVDDEEHICELIKFNLENNGYECICALNGIDALNIVKEEKPDLVLLDLMLPGMDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ IT ++KPF +R++V V +L
Sbjct: 64 DVCKEIRKDNNIATTSIIMITAKGEELDKVLGLELGADDYITKPFSVREMVARVKAVLRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|153838150|ref|ZP_01990817.1| two component transcriptional regulator, winged helix family
[Vibrio parahaemolyticus AQ3810]
gi|149748466|gb|EDM59325.1| two component transcriptional regulator, winged helix family
[Vibrio parahaemolyticus AQ3810]
Length = 226
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ D+R L LG+AG+EV+ NG + + + L++ DI+MP DG
Sbjct: 3 NKQILVVDDNLDLREALSDYLGRAGFEVLCAENGRVMWQLLNDHHPDLIILDIMMPGDDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + D+ ++ +T A ++K F R+L+ + +L
Sbjct: 63 FTLCQKLRK-NSDIPIIMLTAVTEEADRVAGLEMGADDYITKSFSPRELLARIKTILRR 120
>gi|116873390|ref|YP_850171.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
str. SLCC5334]
gi|116742268|emb|CAK21392.1| DNA-binding response regulator ResD [Listeria welshimeri serovar 6b
str. SLCC5334]
Length = 238
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|300855748|ref|YP_003780732.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300435863|gb|ADK15630.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 227
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D++D+ FL +L + YEV + ++G A +K++ L+L DI+MP +
Sbjct: 1 MREKILVVDDEEDIISFLRDSLEEDDYEVFTASSGEEALEKIKLY-PDLILLDIMMPGKN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ ++F+T A + KPF LR L ++ L
Sbjct: 60 GYEVCNDIRDIVS-CPIIFLTAKGEERDIVKGLASGGDDYIQKPFSLRQLKARIHAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|258621380|ref|ZP_05716414.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
gi|258626807|ref|ZP_05721614.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
gi|258580854|gb|EEW05796.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM603]
gi|258586768|gb|EEW11483.1| Probable transcriptional regulator ycf27 [Vibrio mimicus VM573]
Length = 236
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LGKAG+EV+ NGA + + + L++ DI+MP DG
Sbjct: 4 NKQILVVDDNQELREALKDYLGKAGFEVICAENGAVMWKLLETQNPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + ++ +T ++K F R+L+ + +L
Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121
>gi|281355429|ref|ZP_06241923.1| two component transcriptional regulator, winged helix family
[Victivallis vadensis ATCC BAA-548]
gi|281318309|gb|EFB02329.1| two component transcriptional regulator, winged helix family
[Victivallis vadensis ATCC BAA-548]
Length = 231
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+KIL+ ED++ ++ + L K GY V C +G A E L+L D+++P MD
Sbjct: 3 KEKILVVEDEEAIQELIRYNLNKDGYDRVRCCESGEEALAAATEFAPDLILLDLMLPGMD 62
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + RR + ++ +T + + L KPF + L+ + +L
Sbjct: 63 GLAVCRRLKSDTRTSAIPIIMLTAKSEESDIVIGLEMGADDYLPKPFSPKVLIARIKSVL 122
Query: 119 TI 120
Sbjct: 123 RR 124
>gi|261417769|ref|YP_003251451.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319767418|ref|YP_004132919.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261374226|gb|ACX76969.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317112284|gb|ADU94776.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 224
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+++MR + L AG+ + +G A + + P +L D++MP+
Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R E D+ ++F+T + KPF +L+ + +L
Sbjct: 61 DGFAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|121535090|ref|ZP_01666907.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121306340|gb|EAX47265.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 230
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ ++R + L K GY V+ +G +A R E L++ D+++P MD
Sbjct: 1 MTGKILIVEDEANIRELVRFNLAKEGYVVLEAEDGNAALALARRERPDLIVLDLMLPGMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R + ++ +T A + KPF R+L+ + +L
Sbjct: 61 GLDVCRILKGSSETAGMAIIMLTAKAEEVDKIIGLELGADDYMVKPFSPRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|240169348|ref|ZP_04748007.1| mycobacterial persistence regulator [Mycobacterium kansasii ATCC
12478]
Length = 228
Score = 157 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGLEALDMIASDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|323701174|ref|ZP_08112849.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323533776|gb|EGB23640.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 230
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+A+D++ +R+ + L G+ V +G D V+ +P L+L D++MP +DG
Sbjct: 2 KTILIADDEERIRQLVRLYLEAEGFTVCEAEDGQQVLDIVKSQPIDLVLLDLMMPVLDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T + KPF R+LV V +L
Sbjct: 62 TVCKMLRRERK-IPIVMLTAKGEENDRVLGLDLGADDYIVKPFSTRELVARVKAVLRR 118
>gi|319780662|ref|YP_004140138.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166550|gb|ADV10088.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 230
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD +R + AL KAG + +GA+A + L++ DI MPEMD
Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTTGVADGAAALQAIGRRAPDLVVLDIGMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + D+ V+F++ ++KPF R+LV VN +L
Sbjct: 61 GLEVCRRLRHI-SDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVILRR 119
>gi|229163853|ref|ZP_04291794.1| Two component transcriptional regulator, winged helix [Bacillus
cereus R309803]
gi|228619595|gb|EEK76480.1| Two component transcriptional regulator, winged helix [Bacillus
cereus R309803]
Length = 232
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIQVIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|206891156|ref|YP_002249147.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206743094|gb|ACI22151.1| two-component hybrid sensor and regulator [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 356
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
NQ IL+ +D+ D L K L GY +G A KV E L++ D++MP+MDG
Sbjct: 5 NQTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMDG 64
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ +R + + ++ +T + V + KPF R+L V L+T
Sbjct: 65 YEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPFDYRELSARVRSLIT 124
Query: 120 IK 121
K
Sbjct: 125 RK 126
>gi|299538375|ref|ZP_07051658.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
gi|298725962|gb|EFI66554.1| transcriptional regulatory protein [Lysinibacillus fusiformis ZC1]
Length = 238
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ I L+ +D+D +RR L L + GY V NG A +K E+ + +L DI+MPE
Sbjct: 1 MSENISVLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+E+ E ++ +T A + KPF R++V V +L
Sbjct: 61 KDGLEVCAEIRER-AATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|223936068|ref|ZP_03627982.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223895290|gb|EEF61737.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 226
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ MR L L GY V++ +G +V E L+L D++MP++DG
Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L L + ++ +T + L KPF +L+ V +L
Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRR 119
>gi|186682106|ref|YP_001865302.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186464558|gb|ACC80359.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 226
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + RF+ L GY+V ++G + R+ L + D ++P +
Sbjct: 1 MTAHILLVEDEVKLARFVELELSSEGYQVSVAHDGIAGLTLARDSSPDLAILDWMLPGLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T V+ + KPF + +L+ + L
Sbjct: 61 GLEICRRLRATGSTVPVILLTAKDEVSDRVAGLDAGADDYVVKPFSIEELLARIRAHLRR 120
>gi|330827879|ref|YP_004390831.1| winged helix family two component transcriptional regulator
[Aeromonas veronii B565]
gi|328803015|gb|AEB48214.1| Two component transcriptional regulator, winged helix family
[Aeromonas veronii B565]
Length = 240
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+Q K+L+ +DD +R L + L + G+ V NG A + E FSL++ D+++P
Sbjct: 1 MSQQQYKVLVVDDDLKLRSLLERYLTEQGFVVRGVANGEQADRLLTRENFSLMVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR E + V+ +T L KPF+ R+L+ + +
Sbjct: 61 GEDGLSICRRLREAGNQIPVLMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|332654461|ref|ZP_08420204.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
gi|332516425|gb|EGJ46031.1| DNA-binding response regulator SrrA [Ruminococcaceae bacterium D16]
Length = 233
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QK+L+ EDD ++ L L K G+E +G + R +L+L DI++P MD
Sbjct: 1 MAQKVLIVEDDSNIAELLHLYLEKEGFETKVAKDGGKGVEYFRSFQPALVLLDIMLPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E V+ +T + KPF +++++ ++ ++
Sbjct: 61 GWTVLKKIREE-SATPVIMLTAKGETEDKVTGLESGADDYIVKPFEMKEVLARIHAVMRR 119
>gi|261337928|ref|ZP_05965812.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
20093]
gi|270277418|gb|EFA23272.1| DNA-binding response regulator PhoP [Bifidobacterium gallicum DSM
20093]
Length = 243
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AGYEV + +G+ A + + L++ D+++
Sbjct: 1 MSKPIEATIVVVDDEPSIRELLVASLHFAGYEVETAGSGSEAIEVIERTQPDLIILDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + D V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGIDAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|251781983|ref|YP_002996285.1| two-component response regulator [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|242390612|dbj|BAH81071.1| two-component response regulator [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
Length = 236
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++V+ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|323340909|ref|ZP_08081158.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
gi|323091571|gb|EFZ34194.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
Length = 235
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+V + +G A +V E L++ D+++P++DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNLTKEGYDVHTAYDGEEALKQVEEVSPDLIILDLMLPKIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+AR + D+ ++ +T A ++KPF R+LV V L +
Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDAEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRRQ 119
>gi|229032514|ref|ZP_04188481.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1271]
gi|228728805|gb|EEL79814.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1271]
Length = 239
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 8 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 67
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 68 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 126
Query: 120 I 120
Sbjct: 127 R 127
>gi|34496017|ref|NP_900232.1| phosphate regulon transcriptional regulatory protein phoB
[Chromobacterium violaceum ATCC 12472]
gi|34101870|gb|AAQ58238.1| phosphate regulon transcriptional regulatory protein phoB
[Chromobacterium violaceum ATCC 12472]
Length = 229
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + L +AG+ V+ +A VR L+L D ++P
Sbjct: 1 MAANILLVEDEPAIQELIAFNLAQAGHHVLRAGTAEAALTLVRNALPDLVLLDWMLPGAS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A+R E + ++ +T + ++KPF R+L+ + +L
Sbjct: 61 GIDVAKRLRADERTRHIPIIMLTARSDEQDKVAGLETGADDYITKPFSPRELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|33862419|ref|NP_893979.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
gi|33640532|emb|CAE20321.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
Length = 290
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ + R L+ L AGY V+ +G A + E LL+ D+++P+MDG
Sbjct: 25 KATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPKMDG 84
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ + KPF ++L + +L
Sbjct: 85 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142
>gi|325685239|gb|EGD27357.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 242
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A +KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|258423146|ref|ZP_05686039.1| response regulator protein [Staphylococcus aureus A9635]
gi|257846596|gb|EEV70617.1| response regulator protein [Staphylococcus aureus A9635]
Length = 244
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AYD E ++ +L D+++PEMD
Sbjct: 4 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYDLAMENNYACILLDLMLPEMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 64 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 122
>gi|254994186|ref|ZP_05276376.1| two-component response regulator [Listeria monocytogenes FSL
J2-064]
Length = 220
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEARKNVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|229042513|ref|ZP_04190258.1| Two-component response regulator [Bacillus cereus AH676]
gi|228726866|gb|EEL78078.1| Two-component response regulator [Bacillus cereus AH676]
Length = 242
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTN 137
>gi|16801128|ref|NP_471396.1| hypothetical protein lin2062 [Listeria innocua Clip11262]
gi|16414563|emb|CAC97292.1| resD [Listeria innocua Clip11262]
gi|313623105|gb|EFR93378.1| transcriptional regulatory protein ResD [Listeria innocua FSL
J1-023]
Length = 238
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALNMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELRE-YKSTPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|327440830|dbj|BAK17195.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 238
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ I L+ +D+D +RR L L + GY V NG A E+ + +L DI+MPE
Sbjct: 1 MSENISVLIVDDEDRIRRLLKMYLEREGYLVEEAENGEQALSMALEKDYHCILLDIMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+E+ E ++ +T A + KPF R++V V +L
Sbjct: 61 KDGLEVCAELREK-KTTPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|218885985|ref|YP_002435306.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756939|gb|ACL07838.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 230
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +IL+ EDD+D+ + L AG+EV + G + + +L+L D+++P M
Sbjct: 1 MTKERILVVEDDEDILQLLTFTFESAGFEVRTATTGREGLEIALRQKPALVLLDLMLPGM 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+++ R + D+ V+ +T + KPF R+LV + +
Sbjct: 61 SGLDVCRELKRMPETEDVPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|229010688|ref|ZP_04167886.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229057028|ref|ZP_04196422.1| Two-component response regulator [Bacillus cereus AH603]
gi|229132193|ref|ZP_04261050.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|229166232|ref|ZP_04293991.1| Two-component response regulator [Bacillus cereus AH621]
gi|228617177|gb|EEK74243.1| Two-component response regulator [Bacillus cereus AH621]
gi|228651241|gb|EEL07219.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228720305|gb|EEL71881.1| Two-component response regulator [Bacillus cereus AH603]
gi|228750582|gb|EEM00410.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 218
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|138894462|ref|YP_001124915.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|134265975|gb|ABO66170.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
Length = 226
Score = 157 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + L G + NG A D + L++ DI+MPEMDG E
Sbjct: 5 RILVVDDDAHIRELVSHFLSLEGLTIHEAANGKEALDVLETTKVDLVIMDIMMPEMDGWE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D D+ ++ +T + L KPF +LV V LL
Sbjct: 65 LCRELRDYD-DVPILMLTAKGETREKVKGFSLGADDYLVKPFDPLELVARVKALLKR 120
>gi|326791208|ref|YP_004309029.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326541972|gb|ADZ83831.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 228
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+ + + + +L + G+EV + +G A + V+ + ++L D+++P+ D
Sbjct: 1 MNSKILVVDDEKLIVKGIKFSLEQEGWEVDAAYDGEEALNYVKNNKYDVMLLDVMLPKYD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + E ++ ++ +T ++KPF++ +L + +L
Sbjct: 61 GLQVCQLVRE-FSNIPIIMLTAKGEDMDKIMGLEYGADDYVTKPFNILELKARIKAILRR 119
>gi|295402032|ref|ZP_06811993.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312110946|ref|YP_003989262.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294975923|gb|EFG51540.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311216047|gb|ADP74651.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 223
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ M L L GY V C +G +A + L+L DI+MPEMDG E
Sbjct: 3 TILLVDDETRMLELLALYLSPKGYHCVKCESGLAAVQYLENHKADLVLLDIMMPEMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E D+ ++ +T ++KPF +L+ + +L
Sbjct: 63 TCKRIRE-FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRR 118
>gi|171780121|ref|ZP_02921025.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281469|gb|EDT46904.1| hypothetical protein STRINF_01909 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 236
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYE V+ +G A K EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|311745310|ref|ZP_07719095.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
gi|126577843|gb|EAZ82063.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
Length = 230
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+L+ EDD ++ L + L GYE C +G ++K +++ + L L DI+MP+
Sbjct: 1 MSKAKLLVVEDDPNLGDILQEYLEMKGYEPTLCRDGEEGWNKFKKDKYDLCLLDIMMPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG LA+ ++ +L ++F+T + ++KPF + +L+ V +L
Sbjct: 61 DGFTLAKEIKKVQDNLPILFLTAKNQKDDIIEGLKIGADDYITKPFSMEELLLRVTAILR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|284053232|ref|ZP_06383442.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
gi|291565873|dbj|BAI88145.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 233
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + + L G+ NG SA + +++ +++ D+++P +D
Sbjct: 1 MN--ILIVEDEPEIALLIRRTLEGEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLD 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + D ++ +T + + KPF R+LV V LL
Sbjct: 59 GLEVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALL 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|302557641|ref|ZP_07309983.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
Tu4000]
gi|302475259|gb|EFL38352.1| DNA-binding response regulator ResD [Streptomyces griseoflavus
Tu4000]
Length = 242
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L +AGY V +G A + L++ D+++P MDG+E
Sbjct: 13 RVLVVDDDPTVAEIVTGYLDRAGYVVDRAGDGPGALARAAAHWPDLVVLDLMLPGMDGLE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 73 VCRRMRGRGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 128
>gi|166030784|ref|ZP_02233613.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
27755]
gi|166029366|gb|EDR48123.1| hypothetical protein DORFOR_00458 [Dorea formicigenerans ATCC
27755]
Length = 257
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ ++R + LG G+EV NGA A + ++ F L++ DI+MP
Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G + R+ EL + ++F++ + + L+KPF +L++ L+
Sbjct: 61 NGYQTCRKIREL-SNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|218248934|ref|YP_002374305.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|218169412|gb|ACK68149.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
Length = 224
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L +L + Y V +G + + P+ L+L D+++P++DGI
Sbjct: 2 RVLLVEDDPRIATVLADSLKEQRYTVDVAEDGEKGWQLIEAFPYDLILLDVMLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + + V+ +T + KPF L +L + LL N
Sbjct: 62 LCQRLRKSGYAIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDLPELSARIRALLRRGN 120
>gi|169830175|ref|YP_001700333.1| transcriptional regulatory protein [Lysinibacillus sphaericus
C3-41]
gi|168994663|gb|ACA42203.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
C3-41]
Length = 237
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ + L L K GY+V+ +G A +V EE L+L DI++P+ D
Sbjct: 1 MNKTILVVDDEKPIADILQFNLIKEGYKVICAYDGDEALKRVEEEQPDLMLLDIMLPKRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D ++ +T + ++KPF R+L+ V +
Sbjct: 61 GMEVCREVRKKY-DFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRR 119
>gi|253575399|ref|ZP_04852737.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251845396|gb|EES73406.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 225
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + + + L GYEV N G + V E+ L++ DI+MP++D
Sbjct: 1 MGTKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + D + ++ +TG ++A L KPF +LV V LL
Sbjct: 61 GLEVCKRLRK-DAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRR 119
>gi|222528131|ref|YP_002572013.1| winged helix family two component transcriptional regulator
[Caldicellulosiruptor bescii DSM 6725]
gi|312621184|ref|YP_004022797.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
gi|222454978|gb|ACM59240.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor bescii DSM 6725]
gi|312201651|gb|ADQ44978.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
Length = 230
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L K GY+V + +G A ++++ E F ++L D+++P++
Sbjct: 1 MSKAHILVVDDEKPIVDIIKFNLEKEGYKVTASYDGEDALNRIKNENFDMVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ E D+ ++ IT A ++KPF +R+L+ + L
Sbjct: 61 DGFSVCKKVRE-FSDVPIIMITAKADEVDKVLGLELGADDYITKPFGIRELIARIRANLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|168232366|ref|ZP_02657424.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
gi|194471011|ref|ZP_03076995.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|204927311|ref|ZP_03218513.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|238911469|ref|ZP_04655306.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|194457375|gb|EDX46214.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Kentucky
str. CVM29188]
gi|204323976|gb|EDZ09171.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Javiana
str. GA_MM04042433]
gi|205333497|gb|EDZ20261.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Kentucky
str. CDC 191]
Length = 229
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|161504418|ref|YP_001571530.1| transcriptional regulator PhoB [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160865765|gb|ABX22388.1| hypothetical protein SARI_02529 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 229
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|116074401|ref|ZP_01471663.1| two-component response regulator [Synechococcus sp. RS9916]
gi|116069706|gb|EAU75458.1| two-component response regulator [Synechococcus sp. RS9916]
Length = 280
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ +RR L+ L AGY V+ +G A + E L++ D+++P+MDG
Sbjct: 34 KATILVVDDEPAVRRVLVMRLQLAGYRVICAEDGEQALEVFHSESPDLVVLDVMLPKMDG 93
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 94 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 151
>gi|30264915|ref|NP_847292.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|49187736|ref|YP_030989.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49481633|ref|YP_038895.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|50196963|ref|YP_052651.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|65322218|ref|ZP_00395177.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165869742|ref|ZP_02214400.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167634021|ref|ZP_02392344.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167638206|ref|ZP_02396484.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170705481|ref|ZP_02895945.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177651118|ref|ZP_02933949.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190567194|ref|ZP_03020109.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196033098|ref|ZP_03100511.1| DNA-binding response regulator [Bacillus cereus W]
gi|227817646|ref|YP_002817655.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228917502|ref|ZP_04081051.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228929900|ref|ZP_04092915.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228936161|ref|ZP_04098964.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228948597|ref|ZP_04110876.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229124416|ref|ZP_04253604.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 95/8201]
gi|229601717|ref|YP_002869120.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254687657|ref|ZP_05151513.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254725221|ref|ZP_05187004.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254736963|ref|ZP_05194669.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741997|ref|ZP_05199684.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254754404|ref|ZP_05206439.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254757236|ref|ZP_05209263.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|301056364|ref|YP_003794575.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|30259590|gb|AAP28778.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|49181663|gb|AAT57039.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49333189|gb|AAT63835.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|50083025|gb|AAT70159.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|164714571|gb|EDR20090.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167514023|gb|EDR89391.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530822|gb|EDR93524.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170129606|gb|EDS98469.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|172082944|gb|EDT68006.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190561698|gb|EDV15668.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195994527|gb|EDX58482.1| DNA-binding response regulator [Bacillus cereus W]
gi|227007073|gb|ACP16816.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228659068|gb|EEL14720.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 95/8201]
gi|228811096|gb|EEM57438.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228823506|gb|EEM69335.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228829816|gb|EEM75438.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228842174|gb|EEM87273.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229266125|gb|ACQ47762.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|300378533|gb|ADK07437.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 232
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|299821888|ref|ZP_07053776.1| DNA-binding response regulator [Listeria grayi DSM 20601]
gi|299817553|gb|EFI84789.1| DNA-binding response regulator [Listeria grayi DSM 20601]
Length = 235
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L + KAG+EV++ ++G Y+ E L++ D+++P MD
Sbjct: 1 MT-KILVVDDELSIVTLLQFNIEKAGFEVITASDGQEGYELAIAEKPDLIVLDLMLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ D+ ++ +T L+KPF R++V + ++
Sbjct: 60 GIEVTKKLRSEKIDVPILMLTAKDEELDKIIGLELGADDYLTKPFSPREVVARIKAIMRR 119
>gi|255325465|ref|ZP_05366569.1| transcriptional activator protein CopR [Corynebacterium
tuberculostearicum SK141]
gi|255297551|gb|EET76864.1| transcriptional activator protein CopR [Corynebacterium
tuberculostearicum SK141]
Length = 232
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E
Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V L+
Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118
>gi|209527087|ref|ZP_03275602.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209492515|gb|EDZ92855.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 233
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + + L G+ NG SA + +++ +++ D+++P +D
Sbjct: 1 MN--ILIVEDEPEIALLIRRTLEAEGFSCQISQNGLSALEIFQQQRPDVIILDLMLPGLD 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + D ++ +T + + KPF R+LV V LL
Sbjct: 59 GLEVCARIRQQPGQKDPYILMLTAKGEEIDRIVGLSTGADDYMVKPFSPRELVARVRALL 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|170685581|ref|ZP_02876804.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170670045|gb|EDT20785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
Length = 232
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|148240584|ref|YP_001225971.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147849123|emb|CAK24674.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 248
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + +E L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALECFQECEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125
>gi|239628828|ref|ZP_04671859.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239518974|gb|EEQ58840.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 235
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD ++ + L K YE + +G A E +L+L D+++P MDG
Sbjct: 4 KQRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPEFKPNLVLLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + V+ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCRELRS-GSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|117620062|ref|YP_854674.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
gi|117561469|gb|ABK38417.1| GltR [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
Length = 244
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ +DD ++R L + L +AG+EV++ G + + L++ DI+MP DG
Sbjct: 8 SKQLLIVDDDQEIRELLNEYLTRAGFEVLTAAEGNEMRKLLAQHNPDLIILDIMMPGDDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ D + ++ +T + A ++KPF R+L + LL
Sbjct: 68 FTLCQQIR-RDSQVPIIMLTAASDEADRVIGLELGADDYITKPFSPRELQARIKALLRR 125
>gi|89099082|ref|ZP_01171961.1| ResD [Bacillus sp. NRRL B-14911]
gi|89086212|gb|EAR65334.1| ResD [Bacillus sp. NRRL B-14911]
Length = 238
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + Y + +G+ A +K E + ++L D++MP DGIE
Sbjct: 6 KILVVDDEVRIRRLLKMYLERENYVIEEAGDGSEALEKAFETDYDVILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E V+ +T + KPF R++V V LL +
Sbjct: 66 VCRELRER-KATPVIMLTAKGEEVNRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRSS 123
>gi|311740874|ref|ZP_07714701.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304394|gb|EFQ80470.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length = 232
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GYEV++ N+G A + VR E LL+ D++MP MDG+E
Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYEVLTANDGLEAVETVRAENPELLILDVMMPNMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V L+
Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118
>gi|219855601|ref|YP_002472723.1| hypothetical protein CKR_2258 [Clostridium kluyveri NBRC 12016]
gi|219569325|dbj|BAH07309.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 237
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R + L G+ V NG A K+ EE L + DI+MP+MDG E
Sbjct: 15 KVLVIDDDGYIRELICTVLKNDGFSVFEAVNGRDALQKLGEEKIDLCVLDIMMPQMDGYE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ D+ ++ +T + ++ L+KPF + +L+ + LL
Sbjct: 75 FCKQVRRYYEDMPILMLTAKSELSQKVKGFELGADDYLTKPFEVDELLVRIKALLRR 131
>gi|290958895|ref|YP_003490077.1| two-component response regulator [Streptomyces scabiei 87.22]
gi|260648421|emb|CBG71532.1| putative two-component response regulator [Streptomyces scabiei
87.22]
Length = 251
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ +R L AL GY+V + G A V L+L D+ +P++ G E
Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + V+F+TG V ++KPF L+++ V LL
Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFELKEVAARVRALLRR 144
>gi|21281747|ref|NP_644833.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
gi|57651127|ref|YP_184930.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus COL]
gi|87160310|ref|YP_492740.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88193841|ref|YP_498626.1| two-component response regulator [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148266465|ref|YP_001245408.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150392498|ref|YP_001315173.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|221141403|ref|ZP_03565896.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253316856|ref|ZP_04840069.1| response regulator VicR [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|254663952|ref|ZP_05143424.1| response regulator VicR [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|269201708|ref|YP_003280977.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus ED98]
gi|284023055|ref|ZP_06377453.1| response regulator VicR [Staphylococcus aureus subsp. aureus 132]
gi|294849846|ref|ZP_06790586.1| transcriptional regulatory protein walR [Staphylococcus aureus
A9754]
gi|295406882|ref|ZP_06816686.1| two-component system [Staphylococcus aureus A8819]
gi|296276710|ref|ZP_06859217.1| response regulator VicR [Staphylococcus aureus subsp. aureus MR1]
gi|81695624|sp|Q5HJX7|WALR_STAAC RecName: Full=Transcriptional regulatory protein walR
gi|81704770|sp|Q7A216|WALR_STAAW RecName: Full=Transcriptional regulatory protein walR
gi|123407141|sp|Q2G2U6|WALR_STAA8 RecName: Full=Transcriptional regulatory protein walR
gi|123763346|sp|Q2FKN8|WALR_STAA3 RecName: Full=Transcriptional regulatory protein walR
gi|212288558|sp|A6TXG8|WALR_STAA2 RecName: Full=Transcriptional regulatory protein walR
gi|212288559|sp|A5INQ9|WALR_STAA9 RecName: Full=Transcriptional regulatory protein walR
gi|212288573|sp|Q2YUQ3|WALR_STAAB RecName: Full=Transcriptional regulatory protein walR
gi|212288574|sp|A6QD57|WALR_STAAE RecName: Full=Transcriptional regulatory protein walR
gi|212288575|sp|Q99XF3|WALR_STAAM RecName: Full=Transcriptional regulatory protein walR
gi|212288576|sp|Q7A8E1|WALR_STAAN RecName: Full=Transcriptional regulatory protein walR
gi|212288577|sp|Q6GKS7|WALR_STAAR RecName: Full=Transcriptional regulatory protein walR
gi|212288578|sp|Q6GD72|WALR_STAAS RecName: Full=Transcriptional regulatory protein walR
gi|212288579|sp|A8YYU1|WALR_STAAT RecName: Full=Transcriptional regulatory protein walR
gi|212288580|sp|Q9RDT5|WALR_STAAU RecName: Full=Transcriptional regulatory protein walR
gi|212288582|sp|A7WWQ5|WALR_STAA1 RecName: Full=Transcriptional regulatory protein walR
gi|5114230|gb|AAD40237.1|AF136709_1 response regulator YycF [Staphylococcus aureus]
gi|21203182|dbj|BAB93883.1| response regulator [Staphylococcus aureus subsp. aureus MW2]
gi|57285313|gb|AAW37407.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus COL]
gi|87126284|gb|ABD20798.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201399|gb|ABD29209.1| two-component response regulator, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147739534|gb|ABQ47832.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus JH9]
gi|149944950|gb|ABR50886.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|262073998|gb|ACY09971.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus ED98]
gi|294823394|gb|EFG39823.1| transcriptional regulatory protein walR [Staphylococcus aureus
A9754]
gi|294968347|gb|EFG44372.1| two-component system [Staphylococcus aureus A8819]
gi|298693340|gb|ADI96562.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus ED133]
gi|302331790|gb|ADL21983.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302749929|gb|ADL64106.1| transcriptional regulator WalR [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|312828581|emb|CBX33423.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129561|gb|EFT85553.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS03]
gi|315195244|gb|EFU25632.1| response regulator VicR [Staphylococcus aureus subsp. aureus CGS00]
gi|315197936|gb|EFU28269.1| adenylosuccinate synthase [Staphylococcus aureus subsp. aureus
CGS01]
gi|329731617|gb|EGG67977.1| transcriptional regulatory protein WalR [Staphylococcus aureus
subsp. aureus 21189]
Length = 233
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|42784056|ref|NP_981303.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|47568029|ref|ZP_00238735.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|217962340|ref|YP_002340912.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229141591|ref|ZP_04270123.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST26]
gi|42739987|gb|AAS43911.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|47555332|gb|EAL13677.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|217065428|gb|ACJ79678.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228641871|gb|EEK98170.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST26]
Length = 232
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|257880368|ref|ZP_05660021.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257882229|ref|ZP_05661882.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257885424|ref|ZP_05665077.1| transcriptional regulator [Enterococcus faecium 1,231,501]
gi|257888221|ref|ZP_05667874.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257891026|ref|ZP_05670679.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|257894279|ref|ZP_05673932.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|257896891|ref|ZP_05676544.1| transcriptional regulator [Enterococcus faecium Com12]
gi|260562331|ref|ZP_05832845.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|261208378|ref|ZP_05923028.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289566829|ref|ZP_06447239.1| transcriptional regulatory protein yycF [Enterococcus faecium
D344SRF]
gi|314939997|ref|ZP_07847192.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
gi|314943532|ref|ZP_07850297.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|314948950|ref|ZP_07852317.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
gi|314950769|ref|ZP_07853845.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|314994105|ref|ZP_07859422.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|314998036|ref|ZP_07862928.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|257814596|gb|EEV43354.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257817887|gb|EEV45215.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257821280|gb|EEV48410.1| transcriptional regulator [Enterococcus faecium 1,231,501]
gi|257824275|gb|EEV51207.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257827386|gb|EEV54012.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|257830658|gb|EEV57265.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|257833456|gb|EEV59877.1| transcriptional regulator [Enterococcus faecium Com12]
gi|260073255|gb|EEW61596.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|260077439|gb|EEW65158.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289161360|gb|EFD09250.1| transcriptional regulatory protein yycF [Enterococcus faecium
D344SRF]
gi|313587966|gb|EFR66811.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|313591472|gb|EFR70317.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|313597049|gb|EFR75894.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|313597770|gb|EFR76615.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|313640767|gb|EFS05347.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
gi|313644649|gb|EFS09229.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
Length = 244
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GY+V + +G A +KV E L+L D+++P+MDG+
Sbjct: 12 KKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 72 EVAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128
>gi|149178427|ref|ZP_01857017.1| two component transcriptional regulator, winged helix family
protein [Planctomyces maris DSM 8797]
gi|148842744|gb|EDL57117.1| two component transcriptional regulator, winged helix family
protein [Planctomyces maris DSM 8797]
Length = 231
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + FL++ L + GY V +G + + E + L++ D +P D
Sbjct: 1 MSSRILVVEDEARIADFLVRGLSEEGYGVEHAEDGRIGWLLLNSETWDLVILDWWLPVED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+L RR + + V+F+T AV L+KPF +L+ V LL
Sbjct: 61 GIQLLRRFRQKNRTTPVLFLTARDAVTERVTGLDAGADDYLTKPFAFDELLARVRALLRR 120
>gi|223043432|ref|ZP_03613478.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus capitis SK14]
gi|222443221|gb|EEE49320.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus capitis SK14]
Length = 233
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|20806986|ref|NP_622157.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|20515468|gb|AAM23761.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
Length = 225
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D++ + L +L + G+EV + +G +KVR + L++ DI++P+MDG
Sbjct: 2 ERLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLEKVRIGNYDLVILDIMLPKMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T L+KPF+ R+L+ + LL
Sbjct: 62 SVCREIR-TFSNIPIIMLTARGDDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRR 118
>gi|170757016|ref|YP_001782974.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169122228|gb|ACA46064.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 230
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + FL L K GYEV NG A DK+R E F+L+L DI+MP++D
Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R +L ++ ++F+T + ++KPF L +L V+ +L
Sbjct: 61 GFEAIKRIRKLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119
>gi|229103829|ref|ZP_04234509.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228679705|gb|EEL33902.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 228
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALQLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E + ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-NRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|254827167|ref|ZP_05231854.1| resD [Listeria monocytogenes FSL N3-165]
gi|258599549|gb|EEW12874.1| resD [Listeria monocytogenes FSL N3-165]
Length = 238
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELREFKS-TPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|89901505|ref|YP_523976.1| osmolarity response regulator [Rhodoferax ferrireducens T118]
gi|89346242|gb|ABD70445.1| two component transcriptional regulator, winged helix family
[Rhodoferax ferrireducens T118]
Length = 243
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V+ +G S + EP L++ D++MP DG
Sbjct: 8 NDKILICDDDVRIRDLLRRYLTQEGFDVLQAEDGKSLTRLLVREPVDLIVLDLMMPGEDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 68 LSICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|319940070|ref|ZP_08014424.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
gi|319810784|gb|EFW07111.1| response regulator SaeR [Streptococcus anginosus 1_2_62CV]
Length = 228
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD
Sbjct: 1 MTKRILLVDDEVELTEINKRYLTQAGYEVNVAHDGQEALELFQKYSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L PD +FIT + S + ++KPF R+LV VN +L
Sbjct: 61 GYDLIGEVQYLAPDQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRR 120
>gi|308205569|gb|ADO19044.1| two component transcriptional regulator [Nostoc flagelliforme str.
Sunitezuoqi]
Length = 232
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L + GY V + +G S + + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYTVDAAYDGTSGNEHAQTGSYDLLILDWMLPGKTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|300811605|ref|ZP_07092085.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|300497400|gb|EFK32442.1| Transcriptional regulatory protein WalR [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
Length = 242
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A +KV E L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVETAYDGEEAVEKVEEYNPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKGGEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|257899652|ref|ZP_05679305.1| transcriptional regulator [Enterococcus faecium Com15]
gi|257837564|gb|EEV62638.1| transcriptional regulator [Enterococcus faecium Com15]
Length = 244
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GY+V + +G A +KV E L+L D+++P+MDG+
Sbjct: 12 KKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 72 EVAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 128
>gi|227431461|ref|ZP_03913510.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227352827|gb|EEJ43004.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 235
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +D+ + + L K GY+VV+ +G A D +E L+L D ++PE+D
Sbjct: 1 MS-KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ D+ V+ +T + ++KPF R+LV V L
Sbjct: 60 GIEVLRQIRSK-SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229016644|ref|ZP_04173581.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229022859|ref|ZP_04179379.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228738394|gb|EEL88870.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228744634|gb|EEL94699.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 218
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALRKLENDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|256825954|ref|YP_003149914.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
gi|256689347|gb|ACV07149.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
Length = 238
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ ++R L +L AG+EV + G++A E LL+ D+++P+MDG
Sbjct: 6 DATLLVVEDEPNIRELLATSLRFAGFEVHTAAQGSTALQLAAEVEPDLLVLDVMLPDMDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E D + V+F+T +V ++KPF L ++V + +L
Sbjct: 66 FTITRRLRERDQHMPVLFLTARDSVDDKVKGLTVGGDDYVTKPFSLEEVVARIRAILRRS 125
Query: 122 N 122
+
Sbjct: 126 H 126
>gi|123967041|ref|YP_001012122.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
gi|123201407|gb|ABM73015.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
Length = 248
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L+ L AGY+V NG A + E L++ D+++P+M
Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|30018835|ref|NP_830466.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|296501409|ref|YP_003663109.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|29894377|gb|AAP07667.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|296322461|gb|ADH05389.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 225
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|313901469|ref|ZP_07834924.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
gi|313468263|gb|EFR63722.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
Length = 256
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D++ + + L + G V +GA A ++ E +++ D+++P+ DG
Sbjct: 33 TVLVVDDEESLLELVAYNLQRNGMAPVLARDGAEALRRLEERRPQVIILDVMLPDTDGFT 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ +T + ++KPF R+LV + LL
Sbjct: 93 LCRHLRERGIQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 149
>gi|86610346|ref|YP_479108.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558888|gb|ABD03845.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 373
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R L ++L + GY V +NG+ ++ L++ D +MP+MD
Sbjct: 1 MT-TILIVDDDPTIRLVLKRSLERQGYTVEMASNGSEGLEQAHLLVPGLIICDWMMPDMD 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR + +T V + LSKP +L V L
Sbjct: 60 GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119
Query: 119 TI 120
+
Sbjct: 120 RL 121
>gi|229086169|ref|ZP_04218386.1| Two-component response regulator [Bacillus cereus Rock3-44]
gi|228697141|gb|EEL49909.1| Two-component response regulator [Bacillus cereus Rock3-44]
Length = 225
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SEVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|220908785|ref|YP_002484096.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219865396|gb|ACL45735.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 224
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 50/120 (41%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + RF+ L GY V ++G S RE L + D ++P +
Sbjct: 1 MTAHILLVEDEVKLARFIQLELDSEGYRVTVAHDGMSGLSLAREAQPDLAILDWMLPGLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL RR + V+ +T V + KPF + +L+ + L
Sbjct: 61 GIELCRRLRATGNKIPVILLTARDEVGDRVTGLDAGADDYVVKPFSIEELLARIRAHLRR 120
>gi|257067981|ref|YP_003154236.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
gi|256558799|gb|ACU84646.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
Length = 239
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV + + G A + E L++ D+++P+MDG
Sbjct: 12 RLLVVDDEPNIRDLLATSLRFAGFEVFTASTGNEAIREATENQPDLVVLDVMLPDMDGFT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + ++F+T ++KPF L ++V + +L +
Sbjct: 72 VTRRLRDRGEKYPILFLTAKDETQDKVAGLTVGGDDYVTKPFSLEEVVARIRAVLRRTH 130
>gi|239916919|ref|YP_002956477.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
gi|281414626|ref|ZP_06246368.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
gi|289706878|ref|ZP_06503219.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
gi|239838126|gb|ACS29923.1| PhoP-like protein [Micrococcus luteus NCTC 2665]
gi|289556428|gb|EFD49778.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
Length = 226
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ L L K G+EV +G A + L+L D+++P M
Sbjct: 1 MS-RILIVEDEESFSDPLSYLLEKEGFEVTVAADGNEALSVFERDSADLILLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ V+ +T + ++KP+ R+LV V +L
Sbjct: 60 GTEVCRQVRQR-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|116619023|ref|YP_819394.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097870|gb|ABJ63021.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 235
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +D+ + + L K GY+VV+ +G A D +E L+L D ++PE+D
Sbjct: 1 MS-KVLVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALDMYNDENPDLVLLDQMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ D+ V+ +T + ++KPF R+LV V L
Sbjct: 60 GIEVLRQIRSK-SDVPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|148656414|ref|YP_001276619.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148568524|gb|ABQ90669.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 224
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ +L + L GY V ++G A D RE+P L++ D+++P +D
Sbjct: 1 MS-TILIVEDEAEIAGYLRRGLTFEGYTVEIASDGRQALDIAREQPPDLVVLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR D+ ++ +T A+ L KPF +L+ + L
Sbjct: 60 GLEVARRLRAA-SDVPIIMLTARDAIPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|311897734|dbj|BAJ30142.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 256
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 55/115 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L +L GY+V + +G A V + L+L DI+MP MDG+
Sbjct: 18 RVLVVDDEPALRDALESSLAFEGYQVATATDGYEALAAVERDRPDLVLLDIMMPRMDGLT 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR + V+ +T AV L+KPF L +L+ V LL
Sbjct: 78 AVRRMRSRGDTVPVLMLTARDAVGDRVTGLDVGADDYLAKPFELDELLARVRALL 132
>gi|229083888|ref|ZP_04216195.1| Two-component response regulator [Bacillus cereus Rock3-44]
gi|228699409|gb|EEL52087.1| Two-component response regulator [Bacillus cereus Rock3-44]
Length = 230
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL +D+ M L L GY +S +G A + ++ F +L DI+MPEMD
Sbjct: 2 MN--ILLVDDEPRMLELLTLYLTPRGYNCISAISGQEAISYIEKQSFKFILLDIMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R+ ++ ++ +T ++KPFH +L+ + +L
Sbjct: 60 GWETCRKIRS-FSNVPIIMVTARDQTIDVVQGLKIGADDYITKPFHEDELLARIEAVLRR 118
Query: 121 KN 122
N
Sbjct: 119 SN 120
>gi|153825200|ref|ZP_01977867.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
gi|149741179|gb|EDM55230.1| DNA-binding response regulator GltR [Vibrio cholerae MZO-2]
Length = 236
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ +D+ ++R L LGK G+EV+ NG++ ++++ L++ DI+MP DG
Sbjct: 4 NKQILVVDDNQELREALKDYLGKVGFEVICAENGSAMWNRLENHHPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + ++ +T ++K F R+L+ + +L
Sbjct: 64 FTLCQKLRK-HSSVPIIMLTAVTEETDRVTGLELGADDYITKSFSPRELLARIKAILRR 121
>gi|78044944|ref|YP_360245.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997059|gb|ABB15958.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
Length = 228
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +D++ +R L L K G+ V+ +G A + E L++ D+++PE+DG+
Sbjct: 2 KTILLVDDEEKIREVLRLYLEKEGFLVLEAQDGKEALKRFSEHKIDLIILDLMLPEIDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+A+ + + ++ +T + KPF R++V V +L +
Sbjct: 62 EIAKEIRK-TSLVPIIMLTARGEEIDKILGLEIGADDYVVKPFSPREVVARVKAVLRRSS 120
>gi|87303913|ref|ZP_01086579.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
gi|87281609|gb|EAQ73617.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
Length = 248
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|69247564|ref|ZP_00604398.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|227552548|ref|ZP_03982597.1| VicR family response regulator [Enterococcus faecium TX1330]
gi|258614681|ref|ZP_05712451.1| DNA-binding response regulator VicR [Enterococcus faecium DO]
gi|293378479|ref|ZP_06624642.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
gi|293553004|ref|ZP_06673649.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
gi|293559841|ref|ZP_06676356.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
gi|293567713|ref|ZP_06679056.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|294616677|ref|ZP_06696447.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
gi|294619190|ref|ZP_06698676.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecium E1679]
gi|294623110|ref|ZP_06701996.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|68194788|gb|EAN09265.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|227178297|gb|EEI59269.1| VicR family response regulator [Enterococcus faecium TX1330]
gi|291589648|gb|EFF21453.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|291590431|gb|EFF22170.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
gi|291594572|gb|EFF25963.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecium E1679]
gi|291597479|gb|EFF28644.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|291602810|gb|EFF33017.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
gi|291606205|gb|EFF35624.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
gi|292642808|gb|EFF60955.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
Length = 234
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GY+V + +G A +KV E L+L D+++P+MDG+
Sbjct: 2 KKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|228910706|ref|ZP_04074517.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis IBL 200]
gi|228942035|ref|ZP_04104578.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228974966|ref|ZP_04135527.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228981559|ref|ZP_04141856.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis Bt407]
gi|228778238|gb|EEM26508.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis Bt407]
gi|228784819|gb|EEM32837.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228817704|gb|EEM63786.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228848974|gb|EEM93817.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis IBL 200]
gi|326942637|gb|AEA18533.1| two-component response regulator vanR [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 232
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|229080396|ref|ZP_04212919.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228702905|gb|EEL55368.1| Two-component response regulator [Bacillus cereus Rock4-2]
Length = 233
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124
>gi|229043138|ref|ZP_04190863.1| Two-component response regulator [Bacillus cereus AH676]
gi|229144003|ref|ZP_04272419.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228639400|gb|EEK95814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228726197|gb|EEL77429.1| Two-component response regulator [Bacillus cereus AH676]
Length = 218
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|15674628|ref|NP_268802.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
gi|19745650|ref|NP_606786.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
gi|21909908|ref|NP_664176.1| two-component response regulator [Streptococcus pyogenes MGAS315]
gi|28896393|ref|NP_802743.1| two-component response regulator [Streptococcus pyogenes SSI-1]
gi|50913815|ref|YP_059787.1| VicR [Streptococcus pyogenes MGAS10394]
gi|56808928|ref|ZP_00366636.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Streptococcus pyogenes M49 591]
gi|71903089|ref|YP_279892.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
gi|71910248|ref|YP_281798.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
gi|94988065|ref|YP_596166.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
gi|94989945|ref|YP_598045.1| two-component response regulator VicR [Streptococcus pyogenes
MGAS10270]
gi|94991951|ref|YP_600050.1| two-component response regulator VicR [Streptococcus pyogenes
MGAS2096]
gi|94993851|ref|YP_601949.1| two-component response regulator VicR [Streptococcus pyogenes
MGAS10750]
gi|139474240|ref|YP_001128956.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
gi|209558999|ref|YP_002285471.1| Two-component response regulator [Streptococcus pyogenes NZ131]
gi|306827822|ref|ZP_07461092.1| response regulator [Streptococcus pyogenes ATCC 10782]
gi|13621741|gb|AAK33523.1| two-component response regulator [Streptococcus pyogenes M1 GAS]
gi|19747781|gb|AAL97285.1| two-component response regulator [Streptococcus pyogenes MGAS8232]
gi|21904096|gb|AAM78979.1| two-component response regulator [Streptococcus pyogenes MGAS315]
gi|28811644|dbj|BAC64576.1| putative two-component response regulator [Streptococcus pyogenes
SSI-1]
gi|50902889|gb|AAT86604.1| VicR [Streptococcus pyogenes MGAS10394]
gi|71802184|gb|AAX71537.1| two-component response regulator [Streptococcus pyogenes MGAS6180]
gi|71853030|gb|AAZ51053.1| two-component response regulator [Streptococcus pyogenes MGAS5005]
gi|94541573|gb|ABF31622.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
gi|94543453|gb|ABF33501.1| Two-component response regulator VicR [Streptococcus pyogenes
MGAS10270]
gi|94545459|gb|ABF35506.1| Two-component response regulator VicR [Streptococcus pyogenes
MGAS2096]
gi|94547359|gb|ABF37405.1| Two-component response regulator VicR [Streptococcus pyogenes
MGAS10750]
gi|134272487|emb|CAM30750.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
gi|209540200|gb|ACI60776.1| Two-component response regulator [Streptococcus pyogenes NZ131]
gi|304429992|gb|EFM33031.1| response regulator [Streptococcus pyogenes ATCC 10782]
Length = 236
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++V+ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|228951779|ref|ZP_04113878.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229177806|ref|ZP_04305179.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228605597|gb|EEK63045.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228807901|gb|EEM54421.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 218
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|328466857|gb|EGF37967.1| putative response regulator [Lactobacillus helveticus MTCC 5463]
Length = 238
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K G++V + +G A KV + L++ D+++P+ D
Sbjct: 1 MPKKILVVDDEKPISDIIKFNLTKEGFDVDTAYDGEEAVKKVDKYDPDLMILDLMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + D+ ++ +T ++KPF R+LV V L
Sbjct: 61 GLEVAREVRQTH-DMPIIMVTAKDTEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|108803626|ref|YP_643563.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108764869|gb|ABG03751.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 231
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL +DD + L GYEV++ +G A + + E L++ DI+MP +
Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ ++ E D+ V+ +T + ++KPF ++L+ + +L
Sbjct: 61 GFEVLKKIRER-SDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL 117
>gi|6689205|emb|CAB65399.1| VicR protein [Staphylococcus aureus]
Length = 239
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 7 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 67 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 125
>gi|70726233|ref|YP_253147.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus haemolyticus JCSC1435]
gi|68446957|dbj|BAE04541.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Staphylococcus haemolyticus JCSC1435]
Length = 236
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ +D+ + L L AGY V +G A +KV E L++ D+++P+ D
Sbjct: 1 MSQKVLVVDDEQSIVTLLKYNLETAGYIVEVAYDGEEALEKVNEIQPELVVLDVMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T ++KPF R++V V +L
Sbjct: 61 GIEVCKTIRSDKNLVPILMLTAKDDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRR 120
>gi|160898293|ref|YP_001563875.1| osmolarity response regulator [Delftia acidovorans SPH-1]
gi|160363877|gb|ABX35490.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 243
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+E++ +G + + E L++ D++MP DG+
Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|293570841|ref|ZP_06681888.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
gi|291609109|gb|EFF38384.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
Length = 234
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GY+V + +G A +KV E L+L D+++P+MDG+
Sbjct: 2 KKVLVVDDEKPISDIVKFNLAKEGYDVYTAYDGEEALEKVAEVEPDLILLDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTY-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|288561577|ref|YP_003428983.1| two component response regulator [Bacillus pseudofirmus OF4]
gi|288548209|gb|ADC52091.1| two component response regulator [Bacillus pseudofirmus OF4]
Length = 232
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59
N+ IL+ +D+ MR L L G+++ + G A K+R P + L++ DI+MP++
Sbjct: 4 NKTILIVDDEFQMRTLLSIYLKDEGFDLFEASTGKEAITKIRNNPDNYDLIILDIMMPDL 63
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + E + ++ ++ A+ D L+KPF +L+ V LL
Sbjct: 64 DGFEVCKIVRE-YSTIPILMLSARKALEDRVDGLNLGADDYLTKPFEPEELIARVKALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|237730369|ref|ZP_04560850.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
gi|226905908|gb|EEH91826.1| transcriptional regulator PhoB [Citrobacter sp. 30_2]
Length = 229
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ VM +T ++KPF ++LV + +L
Sbjct: 61 GLQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|237707608|ref|ZP_04538089.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
gi|226898818|gb|EEH85077.1| transcriptional regulator PhoB [Escherichia sp. 3_2_53FAA]
gi|315289887|gb|EFU49277.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 110-3]
gi|323958591|gb|EGB54294.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H263]
Length = 229
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|159901175|ref|YP_001547422.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159894214|gb|ABX07294.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 232
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++R + L + G+ V+ ++G +A R++P L++ D+++P++ G+E+
Sbjct: 4 ILVVDDEPNIREVVGLYLRREGHTVLEASDGEAALRLARQQPPDLVVLDLMLPKVTGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + D V+ +T + + KPF R+LV V +L
Sbjct: 64 CRRL-QSDRRTPVIMLTAKSEENDRIIGLGVGADDYVVKPFSPRELVARVEAVLRR 118
>gi|24111777|ref|NP_706287.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 301]
gi|30061895|ref|NP_836066.1| transcriptional regulator PhoB [Shigella flexneri 2a str. 2457T]
gi|110804422|ref|YP_687942.1| transcriptional regulator PhoB [Shigella flexneri 5 str. 8401]
gi|27735236|sp|P45607|PHOB_SHIFL RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|24050564|gb|AAN41994.1| positive response regulator for pho regulon [Shigella flexneri 2a
str. 301]
gi|30040139|gb|AAP15872.1| positive response regulator for pho regulon [Shigella flexneri 2a
str. 2457T]
gi|110613970|gb|ABF02637.1| positive response regulator for pho regulon [Shigella flexneri 5
str. 8401]
gi|281599731|gb|ADA72715.1| Phosphate regulon transcriptional regulatory protein phoB [Shigella
flexneri 2002017]
gi|313646986|gb|EFS11443.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri 2a str. 2457T]
gi|332761723|gb|EGJ92002.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri 2747-71]
gi|332764273|gb|EGJ94509.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri K-671]
gi|332768503|gb|EGJ98686.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri 2930-71]
gi|333022012|gb|EGK41257.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri K-304]
Length = 229
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|311030763|ref|ZP_07708853.1| two component transcriptional regulator [Bacillus sp. m3-13]
Length = 239
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +IL+ +D+D +RR L L + Y + +NG +A + E+ + ++L D++MP
Sbjct: 1 MEKEVRILVVDDEDRIRRLLKMYLERENYVIEEADNGNTALEMALEKEYDVILLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ + E ++ +T + KPF R++V V LL
Sbjct: 61 MDGMEVCKEIREK-KATPIIMLTAKGEETNRVQGFEMGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|308050509|ref|YP_003914075.1| two component transcriptional regulator, winged helix family
[Ferrimonas balearica DSM 9799]
gi|307632699|gb|ADN77001.1| two component transcriptional regulator, winged helix family
[Ferrimonas balearica DSM 9799]
Length = 229
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R L L + G+ S + + + E L+L D ++P
Sbjct: 1 MTANILIVEDESAIREMLTFVLDQHGFRTTSAADYDQGLNAISEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+ E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKALRQDEHTRQIPIIMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|295398639|ref|ZP_06808664.1| response regulator [Aerococcus viridans ATCC 11563]
gi|294973127|gb|EFG48929.1| response regulator [Aerococcus viridans ATCC 11563]
Length = 238
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L GYE+ + +G A +K L++ D+++P++DG+
Sbjct: 2 KKILIVDDEKPISDIISFNLKNEGYEIDTAYDGQQALEKFASFQPDLVVLDLMLPKIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ + D + ++ +T + ++KPF R+L+ V +
Sbjct: 62 EVCRQIRK-DSQVPIIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELMARVKANIRR 118
>gi|87125177|ref|ZP_01081023.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9917]
gi|86166946|gb|EAQ68207.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9917]
Length = 248
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY V++ ++G A + R L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVITASDGNEALECFRVNEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|332995705|gb|AEF05760.1| osmolarity response regulator [Alteromonas sp. SN2]
Length = 240
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAGNAEQMDRLLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR ++ +L ++ +T L KPF+ R+L+ +L +N
Sbjct: 67 ICRRLRQMGNELPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRN 125
>gi|229084387|ref|ZP_04216667.1| Two-component response regulator [Bacillus cereus Rock3-44]
gi|228698927|gb|EEL51632.1| Two-component response regulator [Bacillus cereus Rock3-44]
Length = 219
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +D+ DMR+ + L GYE NG A ++ E + ++ DI+MPEM+GIE+
Sbjct: 2 LLVDDESDMRQLVGMYLDNFGYEWGEAENGKDALHMLQAEHYDFVILDIMMPEMNGIEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|218900022|ref|YP_002448433.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228903369|ref|ZP_04067500.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis IBL 4222]
gi|228967973|ref|ZP_04128982.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar sotto str. T04001]
gi|218540779|gb|ACK93173.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228791697|gb|EEM39290.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228856330|gb|EEN00859.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis IBL 4222]
Length = 232
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIEAQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|295400059|ref|ZP_06810039.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312110691|ref|YP_003989007.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294977838|gb|EFG53436.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311215792|gb|ADP74396.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 225
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D++DMR + L AG+ + +G A D + +L DI+MP+MDG
Sbjct: 5 KKTVLIVDDEEDMRFLVKMYLENAGFSCLEAEDGDKALDVLANVKVDAVLIDIMMPKMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D+ ++F+T + KPF +L+ + ++
Sbjct: 65 FSLCERIRWQ-SDVPILFLTARGEEWDKVKGLKLGGDDYIVKPFSPGELIARIEAVMRR 122
>gi|196041427|ref|ZP_03108720.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196027675|gb|EDX66289.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 232
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|163748837|ref|ZP_02156089.1| osmolarity response regulator [Shewanella benthica KT99]
gi|161331611|gb|EDQ02416.1| osmolarity response regulator [Shewanella benthica KT99]
Length = 241
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + ++ +T L KPF+ R+L+ + ++ ++
Sbjct: 67 ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125
>gi|78780097|ref|YP_398209.1| two component transcriptional regulator [Prochlorococcus marinus
str. MIT 9312]
gi|78713596|gb|ABB50773.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. MIT 9312]
Length = 248
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M
Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVFSATNGEEAIESFHRDSPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|56420909|ref|YP_148227.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|56380751|dbj|BAD76659.1| two-component response regulator [Geobacillus kaustophilus HTA426]
Length = 224
Score = 156 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+++MR + L AG+ + +G A + + P +L D++MP+
Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R E D+ ++F+T + KPF +L+ + +L
Sbjct: 61 DGFAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|309389720|gb|ADO77600.1| two component transcriptional regulator, winged helix family
[Halanaerobium praevalens DSM 2228]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILL EDD + RF+ L GY+V +NG + ++E+ F LLL DI++P ++
Sbjct: 1 MDKKILLIEDDSQIARFIELELEHEGYQVTKFDNGYDGINILKEKSFDLLLLDIMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E D+ ++ +T + + L+KPF + +L+ + L
Sbjct: 61 GMEVCSQIRE-FSDIPIIMLTAKSELEDKVKGLDIGADDYLTKPFEIEELLARIRAHLRR 119
>gi|78044728|ref|YP_360866.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77996843|gb|ABB15742.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
Length = 231
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L + GY+V+ +G A + V++E L++ DI++P M G+E
Sbjct: 2 KILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIVKKELPDLVILDIMLPGMSGLE 61
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ + KPF R+LV V L
Sbjct: 62 VCKNIRNNEKTAEIPIIMLSARGEEVDKILGLELGADDYMVKPFSPRELVARVKARLRR 120
>gi|311103716|ref|YP_003976569.1| phosphate regulon transcriptional regulatory protein PhoB
[Achromobacter xylosoxidans A8]
gi|310758405|gb|ADP13854.1| phosphate regulon transcriptional regulatory protein PhoB
[Achromobacter xylosoxidans A8]
Length = 232
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ +AR+ E + V+ +T + D ++KPF ++L+ + +L
Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|298491554|ref|YP_003721731.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298233472|gb|ADI64608.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 250
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 65/125 (52%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
+IL+ ED++ +R L+ AL GYE+++ +G +A + ++ E PF L++ D+++
Sbjct: 20 RILVVEDEELIREMLVLALEGEGYEIITAADGRAAVEFLKSCESNSGESPFDLVVLDLML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 80 PQINGLDICRLLRHQGNAVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139
Query: 117 LLTIK 121
LL +
Sbjct: 140 LLRRQ 144
>gi|283784214|ref|YP_003364079.1| phosphate regulon two-component system, response regulator
[Citrobacter rodentium ICC168]
gi|212380327|gb|ACJ24903.1| PhoB [Citrobacter rodentium]
gi|282947668|emb|CBG87223.1| phosphate regulon two-component system, response regulator
[Citrobacter rodentium ICC168]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + +A +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAAIREMVCFVLEQNGFQPVEAEDYDTAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|239942395|ref|ZP_04694332.1| putative two-component systen response regulator [Streptomyces
roseosporus NRRL 15998]
Length = 207
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 48/118 (40%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ +R L ++L GY +G A L++ DI MP MDG+
Sbjct: 9 QRILIVDDEPAVREALRRSLAFEGYGTQVAVDGYDALAMAEAYAPDLIVLDIQMPRMDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T V L KPF L +L + LL
Sbjct: 69 TAARRIRATGSTTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARIRALLRR 126
>gi|229075281|ref|ZP_04208274.1| Two-component response regulator [Bacillus cereus Rock4-18]
gi|228707832|gb|EEL60012.1| Two-component response regulator [Bacillus cereus Rock4-18]
Length = 228
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAMEALKLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|218779275|ref|YP_002430593.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
gi|218760659|gb|ACL03125.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
Length = 228
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D++D+ L L + G+++ ++G A + V+ L+L D+++P +
Sbjct: 1 MPKTSILIVDDEEDILELLKFNLEREGFKIFCADSGEKALEAVKNFSPDLVLLDLMLPGI 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+AR + ++ +T + ++KPF R ++ V +
Sbjct: 61 DGLEVARVLKSKPNTSTIPIIMLTAKGDESDVVRGLELGADDYVTKPFSPRVIIARVRAV 120
Query: 118 LTI 120
+
Sbjct: 121 MRR 123
>gi|126697149|ref|YP_001092035.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
gi|126544192|gb|ABO18434.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
Length = 248
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ + + L+ L AGY+V S NG A + + L++ D+++P+M
Sbjct: 1 MSKARILVVDDEPAVLKVLVTRLQLAGYQVYSATNGEEAIESFHRDSPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|78213892|ref|YP_382671.1| two component transcriptional regulator [Synechococcus sp. CC9605]
gi|78198351|gb|ABB36116.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9605]
Length = 259
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG
Sbjct: 19 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPTCTPDLVVLDVMMPKLDG 78
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + LL
Sbjct: 79 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 136
>gi|27466936|ref|NP_763573.1| response regulator [Staphylococcus epidermidis ATCC 12228]
gi|57865896|ref|YP_190075.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
RP62A]
gi|242243238|ref|ZP_04797683.1| response regulator [Staphylococcus epidermidis W23144]
gi|251811382|ref|ZP_04825855.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|282874739|ref|ZP_06283618.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|293367563|ref|ZP_06614216.1| DNA-binding response regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|81672853|sp|Q5HK18|WALR_STAEQ RecName: Full=Transcriptional regulatory protein walR
gi|81843200|sp|Q8CQK0|WALR_STAES RecName: Full=Transcriptional regulatory protein walR
gi|27314478|gb|AAO03615.1|AE016744_18 response regulator [Staphylococcus epidermidis ATCC 12228]
gi|57636554|gb|AAW53342.1| DNA-binding response regulator YycF [Staphylococcus epidermidis
RP62A]
gi|58003341|gb|AAW62233.1| two-component response regulator [Staphylococcus epidermidis]
gi|242233187|gb|EES35499.1| response regulator [Staphylococcus epidermidis W23144]
gi|251805131|gb|EES57788.1| response regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|281296455|gb|EFA88970.1| response regulator receiver domain protein [Staphylococcus
epidermidis SK135]
gi|291318276|gb|EFE58669.1| DNA-binding response regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|319399899|gb|EFV88145.1| response regulator [Staphylococcus epidermidis FRI909]
gi|329728490|gb|EGG64926.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
VCU144]
gi|329735741|gb|EGG72022.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
VCU028]
Length = 233
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|228988116|ref|ZP_04148215.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228771614|gb|EEM20081.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 232
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|89893594|ref|YP_517081.1| hypothetical protein DSY0848 [Desulfitobacterium hafniense Y51]
gi|89333042|dbj|BAE82637.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 230
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L L + G++V + NG A +E P+ L+L D+++P + G E
Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFQVTTAINGLVALTLFKENPYDLVLLDLMLPGLSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ + ++ +T + + +SKPF R++V V +L
Sbjct: 62 ICKEIRKI-SAVPIIMLTAKIELEDRIEGFNMGADDYISKPFSPREVVARVKAVLRR 117
>gi|289579384|ref|YP_003478011.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|289529097|gb|ADD03449.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
Length = 227
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KI + +DD ++ + L K G+EV +G +A K+++ P L++ DI++P +DG
Sbjct: 4 NPKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQDNPPRLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++ +T + + KPF ++L+ V +L
Sbjct: 64 IALCREVRK-FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121
>gi|253577574|ref|ZP_04854886.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843043|gb|EES71079.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+ + L + L GY+V + NGA + L++ D++MP++DG E+
Sbjct: 5 ILVIDDDEKITSMLRRGLAFEGYDVYTAQNGAEGLSMMLSADPDLIILDVMMPKVDGFEV 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR E + V+ +T V L KPF L +L+ V LL K+
Sbjct: 65 CRRLREGGSTVPVLMLTAKDEVENRVKGLDIGADDYLVKPFALEELLARVRALLRRKD 122
>gi|320354561|ref|YP_004195900.1| Fis family two component sigma54 specific transcriptional regulator
[Desulfobulbus propionicus DSM 2032]
gi|320123063|gb|ADW18609.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobulbus propionicus DSM 2032]
Length = 460
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 64/117 (54%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ MR FL L K GY+V + +G +A ++ + F L++TDI MP M G++L
Sbjct: 6 ILVVDDELSMREFLKILLEKEGYQVATAADGQAALERAEKTAFDLVITDIRMPGMSGLDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R +L D+ V+ IT FA+ + ++KPF++ ++ + +L +
Sbjct: 66 LARLKQLQADIGVIMITAFASPDDAVTAMKSGAFDYITKPFNVDEIKTVIRAVLKKR 122
>gi|298345637|ref|YP_003718324.1| response regulator [Mobiluncus curtisii ATCC 43063]
gi|304390674|ref|ZP_07372627.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315654235|ref|ZP_07907143.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
gi|315657866|ref|ZP_07910746.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298235698|gb|ADI66830.1| response regulator [Mobiluncus curtisii ATCC 43063]
gi|304326430|gb|EFL93675.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315491270|gb|EFU80887.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
gi|315491663|gb|EFU81274.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 241
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AGY+V+S +G A E L++ D+++P+MDG
Sbjct: 11 RLLVVDDEPNIRDLLASSLRFAGYDVLSAGDGTEALRLATTEKPDLVILDVMLPDMDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D+ ++F+T + + ++KPF L ++V +N +L
Sbjct: 71 VTRKLRASGIDMPILFLTAKDDMRDKVEGLQAGGDDYVTKPFGLEEVVARINAILRR 127
>gi|145298254|ref|YP_001141095.1| two-component system response regulator PhoB [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142851026|gb|ABO89347.1| two-component system response regulator PhoB [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GYE + + A KV E L++ D +MP
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQKGYETIEAEDYADGLAKVCEPYPELIVLDWMMPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ ++ E+ + V+ +T ++KPF ++L ++ ++
Sbjct: 61 GIQFIKQLKQDEVTRQIPVVMLTARGEEEDKVRGLEAGADDYITKPFSPKELTARLHAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|16759374|ref|NP_454991.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16763777|ref|NP_459392.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|29142855|ref|NP_806197.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|62179008|ref|YP_215425.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|161615421|ref|YP_001589386.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167551797|ref|ZP_02345550.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|167992242|ref|ZP_02573340.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168237507|ref|ZP_02662565.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|168240215|ref|ZP_02665147.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|168261175|ref|ZP_02683148.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|168465482|ref|ZP_02699364.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|168818997|ref|ZP_02830997.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|194450960|ref|YP_002044430.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194736716|ref|YP_002113428.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197264166|ref|ZP_03164240.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|198244456|ref|YP_002214351.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200390991|ref|ZP_03217602.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|207855879|ref|YP_002242530.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|213051513|ref|ZP_03344391.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213417376|ref|ZP_03350518.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213582091|ref|ZP_03363917.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213620466|ref|ZP_03373292.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
gi|213647670|ref|ZP_03377723.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213855581|ref|ZP_03383821.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|224582234|ref|YP_002636032.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|289828482|ref|ZP_06546340.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25300971|pir||AD0551 phosphate regulon transcription regulatory protein PhoB STY0432
[imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
gi|16418901|gb|AAL19351.1| response regulator in two-component regulatory system with PhoR (or
CreC) [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16501665|emb|CAD08852.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Typhi]
gi|29138487|gb|AAO70057.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Typhi str.
Ty2]
gi|62126641|gb|AAX64344.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulates pho regulon (OmpR family) [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161364785|gb|ABX68553.1| hypothetical protein SPAB_03192 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194409264|gb|ACF69483.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL476]
gi|194712218|gb|ACF91439.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|195631850|gb|EDX50370.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Newport
str. SL317]
gi|197242421|gb|EDY25041.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA23]
gi|197289486|gb|EDY28849.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197938972|gb|ACH76305.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199603436|gb|EDZ01982.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Virchow
str. SL491]
gi|205323482|gb|EDZ11321.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Saintpaul
str. SARA29]
gi|205329543|gb|EDZ16307.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205340400|gb|EDZ27164.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Heidelberg
str. SL486]
gi|205344060|gb|EDZ30824.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Weltevreden
str. HI_N05-537]
gi|205349830|gb|EDZ36461.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Hadar str.
RI_05P066]
gi|206707682|emb|CAR31966.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Enteritidis
str. P125109]
gi|224466761|gb|ACN44591.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Paratyphi C
strain RKS4594]
gi|261245680|emb|CBG23476.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Typhimurium
str. D23580]
gi|267992105|gb|ACY86990.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301157009|emb|CBW16492.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Typhimurium
str. SL1344]
gi|312911430|dbj|BAJ35404.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320084671|emb|CBY94462.1| Phosphate regulon transcriptional regulatory protein phoB
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321225121|gb|EFX50182.1| Phosphate regulon transcriptional regulatory protein PhoB SphR
[Salmonella enterica subsp. enterica serovar Typhimurium
str. TN061786]
gi|322614680|gb|EFY11609.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618786|gb|EFY15674.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322623493|gb|EFY20332.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629209|gb|EFY25988.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631929|gb|EFY28683.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637333|gb|EFY34035.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642019|gb|EFY38629.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322646219|gb|EFY42733.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322652515|gb|EFY48869.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653322|gb|EFY49655.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322660529|gb|EFY56765.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322664681|gb|EFY60874.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322669266|gb|EFY65416.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322670812|gb|EFY66945.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678950|gb|EFY75005.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681978|gb|EFY78003.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322685193|gb|EFY81190.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322713467|gb|EFZ05038.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323128714|gb|ADX16144.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323194459|gb|EFZ79654.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197005|gb|EFZ82147.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203989|gb|EFZ89006.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206925|gb|EFZ91878.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211059|gb|EFZ95915.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323214547|gb|EFZ99298.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323223104|gb|EGA07447.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227053|gb|EGA11234.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230129|gb|EGA14249.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233867|gb|EGA17956.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238439|gb|EGA22497.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323244127|gb|EGA28136.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323246287|gb|EGA30270.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323251913|gb|EGA35776.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323257910|gb|EGA41589.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261077|gb|EGA44669.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264993|gb|EGA48492.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323272556|gb|EGA55963.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326622099|gb|EGE28444.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|332987345|gb|AEF06328.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229160351|ref|ZP_04288349.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623075|gb|EEK79903.1| Two-component response regulator [Bacillus cereus R309803]
Length = 218
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALTKLESDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|218549942|ref|YP_002383733.1| transcriptional regulator PhoB [Escherichia fergusonii ATCC 35469]
gi|218357483|emb|CAQ90122.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia fergusonii ATCC 35469]
gi|324114618|gb|EGC08586.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia fergusonii B253]
gi|325498318|gb|EGC96177.1| transcriptional regulator PhoB [Escherichia fergusonii ECD227]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREALTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|183984910|ref|YP_001853201.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium marinum M]
gi|183178236|gb|ACC43346.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium marinum M]
Length = 240
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|124024341|ref|YP_001018648.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
gi|123964627|gb|ABM79383.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
Length = 248
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+VV+ +G A D L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYQVVTACDGNEALDLFHNCEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|52140648|ref|YP_086180.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|229199022|ref|ZP_04325708.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1293]
gi|51974117|gb|AAU15667.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|228584488|gb|EEK42620.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1293]
gi|324328753|gb|ADY24013.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 232
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|153006996|ref|YP_001381321.1| two component transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152030569|gb|ABS28337.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter sp. Fw109-5]
Length = 230
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ EDD + R L LG GY V S ++G + + E L+L D+++P +
Sbjct: 1 MAEKIVIIEDDPSILRGLQLNLGMEGYSVRSASDGETGLRLAKTERPDLVLVDVMLPRLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + DP+L ++ ++ L KPF L++L+ ++ LL
Sbjct: 61 GLEVVREIRKTDPELPILILSAKGQEGDKVAGLQLGADDYLVKPFGLKELLARIDALLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|33862175|ref|NP_893736.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634393|emb|CAE20078.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 248
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ + + L+ L AGY+V NG A + E L++ D+++P+M
Sbjct: 1 MSKASILVVDDEPAVLKVLVTRLQLAGYQVHQATNGEEALEAFHRESPDLIVLDVMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + RR + ++F+T A++ LSKPF ++L + +L
Sbjct: 61 DGFAVCRRIRAE-SVVPIIFLTALEAISERVAGLDLGADDYLSKPFSPKELEARIATILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|15923008|ref|NP_370542.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
gi|15925723|ref|NP_373256.1| response regulator [Staphylococcus aureus subsp. aureus N315]
gi|49482271|ref|YP_039495.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49484930|ref|YP_042151.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82749795|ref|YP_415536.1| two-component response regulator [Staphylococcus aureus RF122]
gi|151220229|ref|YP_001331052.1| response regulator protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156978349|ref|YP_001440608.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
gi|161508284|ref|YP_001573943.1| response regulator VicR [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253730418|ref|ZP_04864583.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733821|ref|ZP_04867986.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|257424214|ref|ZP_05600643.1| response regulator protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257426891|ref|ZP_05603293.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
gi|257429527|ref|ZP_05605914.1| response regulator protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432174|ref|ZP_05608537.1| response regulator protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257435135|ref|ZP_05611186.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus M876]
gi|257793556|ref|ZP_05642535.1| response regulator protein [Staphylococcus aureus A9781]
gi|258411138|ref|ZP_05681417.1| two-component system response regulator [Staphylococcus aureus
A9763]
gi|258420958|ref|ZP_05683892.1| response regulator protein [Staphylococcus aureus A9719]
gi|258423220|ref|ZP_05686112.1| response regulator VicR [Staphylococcus aureus A9635]
gi|258438597|ref|ZP_05689820.1| response regulator VicR [Staphylococcus aureus A9299]
gi|258443947|ref|ZP_05692285.1| response regulator protein [Staphylococcus aureus A8115]
gi|258446237|ref|ZP_05694397.1| response regulator protein [Staphylococcus aureus A6300]
gi|258449104|ref|ZP_05697210.1| response regulator [Staphylococcus aureus A6224]
gi|258451349|ref|ZP_05699380.1| response regulator [Staphylococcus aureus A5948]
gi|258454418|ref|ZP_05702386.1| response regulator protein [Staphylococcus aureus A5937]
gi|262049448|ref|ZP_06022320.1| response regulator [Staphylococcus aureus D30]
gi|262051885|ref|ZP_06024100.1| response regulator [Staphylococcus aureus 930918-3]
gi|282894297|ref|ZP_06302527.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A8117]
gi|282902649|ref|ZP_06310542.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus C160]
gi|282907065|ref|ZP_06314913.1| two-component system OmpR family response regulator VicR
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282910044|ref|ZP_06317852.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282912292|ref|ZP_06320088.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282912932|ref|ZP_06320724.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus M899]
gi|282918086|ref|ZP_06325836.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus D139]
gi|282920737|ref|ZP_06328456.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A9765]
gi|282921308|ref|ZP_06329026.1| two-component response regulator [Staphylococcus aureus subsp.
aureus C427]
gi|282922560|ref|ZP_06330250.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus C101]
gi|282927768|ref|ZP_06335382.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A10102]
gi|283767808|ref|ZP_06340723.1| two-component system OmpR family response regulator VicR
[Staphylococcus aureus subsp. aureus H19]
gi|283959502|ref|ZP_06376943.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus A017934/97]
gi|293497985|ref|ZP_06665839.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus 58-424]
gi|293511575|ref|ZP_06670269.1| transcriptional regulatory protein walR [Staphylococcus aureus
subsp. aureus M809]
gi|293550184|ref|ZP_06672856.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus M1015]
gi|295429315|ref|ZP_06821937.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|297209434|ref|ZP_06925832.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297245917|ref|ZP_06929779.1| two-component system [Staphylococcus aureus A8796]
gi|297589183|ref|ZP_06947824.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|300911458|ref|ZP_07128907.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|304379966|ref|ZP_07362695.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|13699935|dbj|BAB41234.1| response regulator [Staphylococcus aureus subsp. aureus N315]
gi|14245785|dbj|BAB56180.1| response regulator [Staphylococcus aureus subsp. aureus Mu50]
gi|49240400|emb|CAG39046.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49243373|emb|CAG41790.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|82655326|emb|CAI79706.1| two-component response regulator [Staphylococcus aureus RF122]
gi|150373029|dbj|BAF66289.1| response regulator protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156720484|dbj|BAF76901.1| response regulator [Staphylococcus aureus subsp. aureus Mu3]
gi|160367093|gb|ABX28064.1| response regulator VicR [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253725898|gb|EES94627.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728124|gb|EES96853.1| response regulator [Staphylococcus aureus subsp. aureus TCH130]
gi|257273232|gb|EEV05334.1| response regulator protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276522|gb|EEV07973.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322]
gi|257280008|gb|EEV10595.1| response regulator protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257283053|gb|EEV13185.1| response regulator protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257285731|gb|EEV15847.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus M876]
gi|257787528|gb|EEV25868.1| response regulator protein [Staphylococcus aureus A9781]
gi|257840023|gb|EEV64488.1| two-component system response regulator [Staphylococcus aureus
A9763]
gi|257843148|gb|EEV67563.1| response regulator protein [Staphylococcus aureus A9719]
gi|257846549|gb|EEV70571.1| response regulator VicR [Staphylococcus aureus A9635]
gi|257848156|gb|EEV72148.1| response regulator VicR [Staphylococcus aureus A9299]
gi|257850831|gb|EEV74775.1| response regulator protein [Staphylococcus aureus A8115]
gi|257855063|gb|EEV78006.1| response regulator protein [Staphylococcus aureus A6300]
gi|257857537|gb|EEV80432.1| response regulator [Staphylococcus aureus A6224]
gi|257860879|gb|EEV83696.1| response regulator [Staphylococcus aureus A5948]
gi|257863512|gb|EEV86272.1| response regulator protein [Staphylococcus aureus A5937]
gi|259160212|gb|EEW45241.1| response regulator [Staphylococcus aureus 930918-3]
gi|259162445|gb|EEW47015.1| response regulator [Staphylococcus aureus D30]
gi|269939544|emb|CBI47902.1| transcriptional regulatory protein WalR [Staphylococcus aureus
subsp. aureus TW20]
gi|282314781|gb|EFB45167.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus C101]
gi|282315723|gb|EFB46107.1| two-component response regulator [Staphylococcus aureus subsp.
aureus C427]
gi|282318371|gb|EFB48731.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus D139]
gi|282323032|gb|EFB53351.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus M899]
gi|282323988|gb|EFB54304.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282326110|gb|EFB56415.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282329964|gb|EFB59485.1| two-component system OmpR family response regulator VicR
[Staphylococcus aureus subsp. aureus Btn1260]
gi|282590528|gb|EFB95606.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A10102]
gi|282594145|gb|EFB99133.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A9765]
gi|282597108|gb|EFC02067.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus C160]
gi|282763342|gb|EFC03472.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus A8117]
gi|283461687|gb|EFC08771.1| two-component system OmpR family response regulator VicR
[Staphylococcus aureus subsp. aureus H19]
gi|283469247|emb|CAQ48458.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Staphylococcus aureus subsp. aureus ST398]
gi|283789094|gb|EFC27921.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285815745|gb|ADC36232.1| Two-component response regulator [Staphylococcus aureus 04-02981]
gi|290919231|gb|EFD96307.1| DNA-binding response regulator YycF [Staphylococcus aureus subsp.
aureus M1015]
gi|291096916|gb|EFE27174.1| two-component system, OmpR family, response regulator VicR
[Staphylococcus aureus subsp. aureus 58-424]
gi|291465533|gb|EFF08065.1| transcriptional regulatory protein walR [Staphylococcus aureus
subsp. aureus M809]
gi|295127074|gb|EFG56718.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296885895|gb|EFH24830.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297177282|gb|EFH36535.1| two-component system [Staphylococcus aureus A8796]
gi|297577694|gb|EFH96407.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|300887637|gb|EFK82833.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|304341546|gb|EFM07456.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312436841|gb|ADQ75912.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
gi|320141436|gb|EFW33279.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320144418|gb|EFW36183.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323440407|gb|EGA98120.1| two-component response regulator [Staphylococcus aureus O11]
gi|323443113|gb|EGB00732.1| two-component response regulator [Staphylococcus aureus O46]
gi|329312742|gb|AEB87155.1| Transcriptional regulatory protein walR [Staphylococcus aureus
subsp. aureus T0131]
gi|329725706|gb|EGG62185.1| transcriptional regulatory protein WalR [Staphylococcus aureus
subsp. aureus 21172]
gi|329732312|gb|EGG68662.1| transcriptional regulatory protein WalR [Staphylococcus aureus
subsp. aureus 21193]
Length = 235
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 3 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 63 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 121
>gi|283834288|ref|ZP_06354029.1| phosphate regulon transcriptional regulatory protein PhoB
[Citrobacter youngae ATCC 29220]
gi|291069814|gb|EFE07923.1| phosphate regulon transcriptional regulatory protein PhoB
[Citrobacter youngae ATCC 29220]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ +M +T ++KPF ++LV + +L
Sbjct: 61 GLQFIKHLKREAMTRDIPIMMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|148654964|ref|YP_001275169.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148567074|gb|ABQ89219.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ +R L +AG+ V+ +NG + R E L++ D+ +P MD
Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADNGPEGVELARRERPDLVILDLNLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A R + D+ ++ +T + + + KPF R+LV + +L
Sbjct: 61 GMEVAARLRQE-SDVFIIMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARIEAILRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|327438192|dbj|BAK14557.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 237
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + L L K GY V+ +G A +V EE L+L DI++P+ D
Sbjct: 2 MDKTILVVDDEKPIADILQFNLIKEGYRVICAYDGDEALQRVEEEQPDLMLLDIMLPKRD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D ++ +T + ++KPF R+L+ V +
Sbjct: 62 GMEVCREVRKKY-DFPIIMLTAKGSEIDKVLGLEMGADDYVTKPFSTRELIARVKANMRR 120
>gi|6689352|emb|CAB65451.1| VicR protein [Streptococcus pyogenes]
Length = 239
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++V+ +G A EE L++ D+++PE+DG+
Sbjct: 5 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 65 EVAKEIRK-TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 121
>gi|307707983|ref|ZP_07644458.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
gi|307616048|gb|EFN95246.1| response regulator SaeR [Streptococcus mitis NCTC 12261]
Length = 231
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|229065498|ref|ZP_04200746.1| Two-component response regulator [Bacillus cereus AH603]
gi|228715816|gb|EEL67588.1| Two-component response regulator [Bacillus cereus AH603]
Length = 228
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|271970059|ref|YP_003344255.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270513234|gb|ACZ91512.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 235
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ L +L AG+ V + NG A V+ L++ D+++P+MDG +
Sbjct: 8 RLLIVEDEPNILELLAASLRFAGFGVNTAGNGTDAVAAVQRHRPDLIVLDVMLPDMDGFD 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D V+F+T A ++KPF L ++V + +L
Sbjct: 68 VVRRLRGGGTDTPVVFLTARDATEDKIRGLTAGGDDYVTKPFSLEEVVARIRAVLRR 124
>gi|229011744|ref|ZP_04168926.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229170686|ref|ZP_04298329.1| Two-component response regulator [Bacillus cereus AH621]
gi|228612789|gb|EEK69971.1| Two-component response regulator [Bacillus cereus AH621]
gi|228749541|gb|EEL99384.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 228
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|255022542|ref|ZP_05294528.1| two-component response regulator [Listeria monocytogenes FSL
J1-208]
Length = 225
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVELEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +LV + LL
Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|134296588|ref|YP_001120323.1| two component transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134139745|gb|ABO55488.1| two component transcriptional regulator, winged helix family
[Burkholderia vietnamiensis G4]
gi|325521611|gb|EGD00393.1| two component transcriptional regulator [Burkholderia sp. TJI49]
Length = 241
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|238060857|ref|ZP_04605566.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
gi|237882668|gb|EEP71496.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
Length = 233
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++ L +L AG++V + +G++A + ++ L++ D+++P++DG E
Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+F+T A ++KPF L +L + +L
Sbjct: 69 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125
>gi|114327579|ref|YP_744736.1| phosphate regulon transcriptional regulatory protein phoB
[Granulibacter bethesdensis CGDNIH1]
gi|114315753|gb|ABI61813.1| phosphate regulon transcriptional regulatory protein phoB
[Granulibacter bethesdensis CGDNIH1]
Length = 249
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + L L K G+ V ++G A ++ E L+L D ++P + GIE
Sbjct: 23 TVLIVEDEAALATMLRYNLEKQGFRVEEASDGQEALHRLSEVQPDLVLLDWMLPGLSGIE 82
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T + ++KPF+++ L + LL
Sbjct: 83 VCRQIRRKPGTRDLPIIMVTARVEDQDAVRALNTGADDYITKPFNMQALQARIRALLRR 141
>gi|206976960|ref|ZP_03237861.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|222098325|ref|YP_002532382.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|206744765|gb|EDZ56171.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|221242383|gb|ACM15093.1| DNA-binding response regulator [Bacillus cereus Q1]
Length = 232
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|172057053|ref|YP_001813513.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171989574|gb|ACB60496.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 238
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +IL+ +D++ +RR L L + + + +NG +A + E + ++L D++MP+
Sbjct: 1 MSEEARILVVDDEERIRRLLKMYLERENFTIEEADNGETALEMALETEYDVILLDLMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+++ + ++ +T + KPF R++V V +L
Sbjct: 61 LDGMQVCEELRK-TKATPIVMLTAKGEETNRVHGFEMGADDYIVKPFSPREVVLRVKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|317404463|gb|EFV84875.1| response regulator [Achromobacter xylosoxidans C54]
Length = 232
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ +AR+ E + V+ +T + D ++KPF ++L+ + +L
Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|295096819|emb|CBK85909.1| phosphate regulon transcriptional regulatory protein PhoB
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|146310528|ref|YP_001175602.1| transcriptional regulator PhoB [Enterobacter sp. 638]
gi|145317404|gb|ABP59551.1| two component transcriptional regulator, winged helix family
[Enterobacter sp. 638]
Length = 229
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|325571333|ref|ZP_08146833.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus casseliflavus ATCC 12755]
gi|325155809|gb|EGC68005.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus casseliflavus ATCC 12755]
Length = 234
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+VVS ++G AY+ +PF ++ D+++P MDGI
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAYELALSKPFDFIILDVMLPNMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|314934943|ref|ZP_07842302.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
gi|313652873|gb|EFS16636.1| DNA-binding response regulator YycF [Staphylococcus caprae C87]
Length = 233
Score = 156 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGND 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|315647169|ref|ZP_07900282.1| two-component response regulator [Paenibacillus vortex V453]
gi|315277371|gb|EFU40700.1| two-component response regulator [Paenibacillus vortex V453]
Length = 231
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY+V+ +G A + L + DI+MP++
Sbjct: 1 MKRITILIADDEAEIADLIELHLKKEGYDVLKAADGQEAVQAAQTHSVDLAILDIMMPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ E + ++F++ + ++KPF+ +L+ VN L
Sbjct: 61 DGYEVIRQIREQH-HMPIIFLSAKTSDLDKIAGLVRGADDYMTKPFNPMELIARVNAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|229161432|ref|ZP_04289413.1| Two-component response regulator [Bacillus cereus R309803]
gi|228621969|gb|EEK78814.1| Two-component response regulator [Bacillus cereus R309803]
Length = 228
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + + E+ F L++ D++MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALELLEEKRFDLIILDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|167629886|ref|YP_001680385.1| transcriptional regulator, putative [Heliobacterium modesticaldum
Ice1]
gi|167592626|gb|ABZ84374.1| transcriptional regulator, putative [Heliobacterium modesticaldum
Ice1]
Length = 277
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I +A+D+ + + + L K G+E V+ NG ++ L++ DI+MP +
Sbjct: 1 MT-RIFIADDEPPILELIRRYLEKEGFEAVTFTNGDDLLAAYAQQVPDLVILDIMMPGTN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R D D+ ++ ++ LSKPF R+LV V +L
Sbjct: 60 GLDVCKRLR-RDSDVPIIIVSAKDDEIDRILGLELGGDDYLSKPFSPRELVVRVKNILRR 118
>gi|115352497|ref|YP_774336.1| two component transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115282485|gb|ABI88002.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria AMMD]
Length = 251
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 11 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 71 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 130
Query: 121 K 121
+
Sbjct: 131 R 131
>gi|78213143|ref|YP_381922.1| two component transcriptional regulator [Synechococcus sp. CC9605]
gi|78197602|gb|ABB35367.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9605]
Length = 254
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPE 58
+++L+ EDDD +R + +AL G+EV +C +GASA + +P L++ D+++P
Sbjct: 24 TRRLLVVEDDDSIRETVGEALRAEGFEVHTCADGASALTLITAGSSDPVDLIVLDLMLPG 83
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G++L R L+ ++ I+ + L KPF LR+LV LL
Sbjct: 84 LGGLDLCRELRRLNNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALL 143
Query: 119 TIKN 122
+
Sbjct: 144 RRSS 147
>gi|16803987|ref|NP_465472.1| hypothetical protein lmo1948 [Listeria monocytogenes EGD-e]
gi|47097091|ref|ZP_00234661.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
1/2a F6854]
gi|217963900|ref|YP_002349578.1| ResD family transcriptional regulator [Listeria monocytogenes
HCC23]
gi|224498602|ref|ZP_03666951.1| transcriptional regulatory protein ResD [Listeria monocytogenes
Finland 1988]
gi|224501252|ref|ZP_03669559.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
R2-561]
gi|254831451|ref|ZP_05236106.1| transcriptional regulatory protein ResD [Listeria monocytogenes
10403S]
gi|254899355|ref|ZP_05259279.1| transcriptional regulatory protein ResD [Listeria monocytogenes
J0161]
gi|254912506|ref|ZP_05262518.1| resD [Listeria monocytogenes J2818]
gi|254936833|ref|ZP_05268530.1| resD [Listeria monocytogenes F6900]
gi|255026084|ref|ZP_05298070.1| transcriptional regulatory protein ResD [Listeria monocytogenes FSL
J2-003]
gi|284802393|ref|YP_003414258.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
gi|284995535|ref|YP_003417303.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
gi|290892108|ref|ZP_06555104.1| resD protein [Listeria monocytogenes FSL J2-071]
gi|16411401|emb|CAD00026.1| resD [Listeria monocytogenes EGD-e]
gi|47014536|gb|EAL05499.1| DNA-binding response regulator ResD [Listeria monocytogenes str.
1/2a F6854]
gi|217333170|gb|ACK38964.1| transcriptional regulatory protein ResD [Listeria monocytogenes
HCC23]
gi|258609429|gb|EEW22037.1| resD [Listeria monocytogenes F6900]
gi|284057955|gb|ADB68896.1| hypothetical protein LM5578_2149 [Listeria monocytogenes 08-5578]
gi|284061002|gb|ADB71941.1| hypothetical protein LM5923_2100 [Listeria monocytogenes 08-5923]
gi|290558231|gb|EFD91749.1| resD protein [Listeria monocytogenes FSL J2-071]
gi|293590491|gb|EFF98825.1| resD [Listeria monocytogenes J2818]
gi|307571530|emb|CAR84709.1| DNA-binding response regulator [Listeria monocytogenes L99]
Length = 238
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELREFKS-TPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|294138932|ref|YP_003554910.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
gi|293325401|dbj|BAJ00132.1| transcriptional regulatory protein OmpR [Shewanella violacea DSS12]
Length = 241
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + ++ +T L KPF+ R+L+ + ++ ++
Sbjct: 67 ICRRLRQQGNTIPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125
>gi|240171667|ref|ZP_04750326.1| two-component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium kansasii ATCC 12478]
Length = 240
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++ L +L G+EV + +NGA A D+ RE ++ D++MP MDG
Sbjct: 15 RILVVDDEANIVELLSVSLKFQGFEVHTASNGAQALDRAREARPDAVILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 75 VLRRLRADGVDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|229062544|ref|ZP_04199856.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH603]
gi|228716751|gb|EEL68444.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH603]
Length = 232
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M
Sbjct: 1 MKHISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|251798742|ref|YP_003013473.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247546368|gb|ACT03387.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 238
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L AGY+V ++G + ++ ++ L++ D+++P+MD
Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + + ++ +T V ++KPF ++L++ + +
Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRR 120
>gi|159899318|ref|YP_001545565.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892357|gb|ABX05437.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 236
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ +L + L G+ V ++G + RE P L++ DI++P MDG E
Sbjct: 9 RILVVEDEKEIAGYLRRGLAFEGFTVEVAHDGPTGIAAARERPADLVILDIMLPGMDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D+ ++ +T V L KPF +L+ + LL
Sbjct: 69 VCRRLRA-GSDVPIIMLTAKETVPDRVMGLESGADDYLIKPFAFEELLARIRALLRR 124
>gi|71842271|ref|YP_277359.1| Ycf27 [Emiliania huxleyi]
gi|60101514|gb|AAX13858.1| ompR [Emiliania huxleyi]
Length = 239
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ ++R+ L L GY V+S ++G A +E +L++ DI++P++DG
Sbjct: 7 KEKILVVDDESNIRKILETRLTIRGYNVISASDGEEAIRLFHQEQPNLVILDIMLPKLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +T ++ + KPF+ ++L V LL
Sbjct: 67 YTVCSELRKK-SNVPIIMLTARGDISDRVMGLEFGADDYVIKPFYPKELEARVRSLLRR 124
>gi|82775697|ref|YP_402044.1| transcriptional regulator PhoB [Shigella dysenteriae Sd197]
gi|309786981|ref|ZP_07681593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
dysenteriae 1617]
gi|1172482|sp|P45606|PHOB_SHIDY RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|152773|gb|AAA26535.1| phosphate regulatory protein phoB [Shigella dysenteriae]
gi|81239845|gb|ABB60555.1| positive response regulator for pho regulon [Shigella dysenteriae
Sd197]
gi|308924559|gb|EFP70054.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
dysenteriae 1617]
Length = 229
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|319789306|ref|YP_004150939.1| two component transcriptional regulator, winged helix family
[Thermovibrio ammonificans HB-1]
gi|317113808|gb|ADU96298.1| two component transcriptional regulator, winged helix family
[Thermovibrio ammonificans HB-1]
Length = 223
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDDD + + L GY+V +G A + ++ + +++ D+++P ++G++
Sbjct: 3 RVLLVEDDDSIGELVTYYLKNKGYDVEWVQDGLEARELLKSRKYDIIVLDLMLPGVNGLD 62
Query: 64 LAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R R ++ D ++ +T ++KPF +++L+ + +L
Sbjct: 63 LCREVRLRGINKDTPIIVLTAIGDEDTKVHGLEAGADDYVTKPFSIKELLARIEAVLRR 121
>gi|257487351|ref|ZP_05641392.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289626864|ref|ZP_06459818.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649144|ref|ZP_06480487.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
aesculi str. 2250]
gi|320322868|gb|EFW78959.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329823|gb|EFW85811.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330867867|gb|EGH02576.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330874323|gb|EGH08472.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330988064|gb|EGH86167.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331009049|gb|EGH89105.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 245
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|229095884|ref|ZP_04226862.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229101998|ref|ZP_04232711.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|229114837|ref|ZP_04244250.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228668529|gb|EEL23958.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228681385|gb|EEL35549.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228687508|gb|EEL41408.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 218
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLESDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|118479970|ref|YP_897121.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196044002|ref|ZP_03111239.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225866850|ref|YP_002752228.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|118419195|gb|ABK87614.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196025338|gb|EDX64008.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225785931|gb|ACO26148.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 232
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|293191860|ref|ZP_06609321.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
F0309]
gi|292820443|gb|EFF79428.1| DNA-binding response regulator TrcR [Actinomyces odontolyticus
F0309]
Length = 236
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E
Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DP+L V+F+T AVA ++KPF L ++ V LL
Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRR 128
>gi|260893730|ref|YP_003239827.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
gi|260865871|gb|ACX52977.1| two component transcriptional regulator, winged helix family
[Ammonifex degensii KC4]
Length = 229
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ EDD +R + + L GY+V++ G A +V++E L++ D+ +P++DG
Sbjct: 3 TAKILVVEDDPRIREIITRILSCEGYQVITSTGGWEALTRVQKESPDLVILDLWLPDLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R+ + V+ ++ A ++KPF +LV V +L
Sbjct: 63 LEVCRQLRAKYA-IPVIIVSARGEEADKIAGFTLGADDYVTKPFSPAELVLRVKAVLRR 120
>gi|253576379|ref|ZP_04853709.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844272|gb|EES72290.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 238
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +RR L L K GYE+ +G +A + L+L D+++P +DG+E
Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYEIDEAEDGETALKLATSNDYGLILLDVMLPGIDGVE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+ +T + KPF R+++ V ++
Sbjct: 67 VCNRLRQV-KATPVLMLTAKGEEINRVQGFEVGADDYVVKPFSPREVIYRVKAIMRR 122
>gi|228908966|ref|ZP_04072796.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228850688|gb|EEM95512.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 228
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|228937889|ref|ZP_04100517.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228977345|ref|ZP_04137740.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228782322|gb|EEM30505.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228821795|gb|EEM67795.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326938368|gb|AEA14264.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 225
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V N+G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCANSGEEAILHIENQNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|269926213|ref|YP_003322836.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269789873|gb|ACZ42014.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 228
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ FL +AL AGYEV + +NG L++ D +MP+MDGIE+
Sbjct: 6 ILVIDDDKNITSFLRRALSYAGYEVKTAHNGQEGLQVALSNAPDLVILDWLMPDMDGIEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R D ++ ++ +T V+ L KPF +L+ V LL
Sbjct: 66 CKRLRSAD-NIPILMLTAKDEVSDRVQGLEAGADDYLVKPFAHEELIARVKALLRR 120
>gi|107023338|ref|YP_621665.1| two component transcriptional regulator [Burkholderia cenocepacia
AU 1054]
gi|116690421|ref|YP_836044.1| two component transcriptional regulator [Burkholderia cenocepacia
HI2424]
gi|170733741|ref|YP_001765688.1| two component transcriptional regulator [Burkholderia cenocepacia
MC0-3]
gi|206560945|ref|YP_002231710.1| two-component regulatory system, response regulator protein
[Burkholderia cenocepacia J2315]
gi|105893527|gb|ABF76692.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia AU 1054]
gi|116648510|gb|ABK09151.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia HI2424]
gi|169816983|gb|ACA91566.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia MC0-3]
gi|198036987|emb|CAR52908.1| two-component regulatory system, response regulator protein
[Burkholderia cenocepacia J2315]
Length = 241
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|228913968|ref|ZP_04077592.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228926429|ref|ZP_04089501.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932679|ref|ZP_04095553.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944997|ref|ZP_04107358.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229090352|ref|ZP_04221595.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|229120938|ref|ZP_04250180.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|229172038|ref|ZP_04299603.1| Two-component response regulator [Bacillus cereus MM3]
gi|229183591|ref|ZP_04310814.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228599834|gb|EEK57431.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228611381|gb|EEK68638.1| Two-component response regulator [Bacillus cereus MM3]
gi|228662598|gb|EEL18196.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228692935|gb|EEL46653.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228814666|gb|EEM60926.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228826997|gb|EEM72757.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833253|gb|EEM78818.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845690|gb|EEM90717.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 218
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|300087391|ref|YP_003757913.1| winged helix family two component transcriptional regulator
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299527124|gb|ADJ25592.1| two component transcriptional regulator, winged helix family
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 229
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + L K GY V++ +G + R+E L++ D++MP++
Sbjct: 3 MAKKILVIDDERKIIDIVRAYLEKEGYRVLTATDGEAGLKVWRQERPDLVVLDLMMPKLS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+ +T + ++KPF R+LV + +L
Sbjct: 63 GNDVCRIIRQE-SETPVIMLTARDELTDKIVGLELGADDYVTKPFEGRELVARIKAVLRR 121
>gi|189351171|ref|YP_001946799.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
gi|189335193|dbj|BAG44263.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
Length = 241
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|194445785|ref|YP_002039637.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194404448|gb|ACF64670.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Newport
str. SL254]
Length = 229
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|91203082|emb|CAJ72721.1| strongly similar to response regulator protein phoB [Candidatus
Kuenenia stuttgartiensis]
Length = 230
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ D+ ++ L K GY+ ++ +G +A + + E +L++ DI++P M+
Sbjct: 1 MNETILIVDDERDIVNLIMYHLEKDGYKTITALDGEAALELSKSERPALIILDIMLPGMN 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ +R E D ++ +T ++KPF ++LV V+ +L
Sbjct: 61 GLEVCKRLKSDEALSDAAIIMLTARGEEDDITRGLKLGADDYVTKPFSPKELVARVHSVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|329115847|ref|ZP_08244564.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parauberis NCFD 2020]
gi|326906252|gb|EGE53166.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parauberis NCFD 2020]
Length = 236
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GY+ ++ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKVLIVDDEKPISDIIKFNLTKEGYDTITAFDGREAVTAFEEEKPDLVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|260890602|ref|ZP_05901865.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
gi|260859647|gb|EEX74147.1| DNA-binding response regulator ArlR [Leptotrichia hofstadii F0254]
Length = 226
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R L L G++V +G + + + ++L D+++P+M
Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R E + ++ +T ++ ++KPF +L+ + LL
Sbjct: 61 GMEVCKRIRE-TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRR 119
>gi|228961124|ref|ZP_04122750.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228798567|gb|EEM45554.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 232
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L K GY VV +G A + + L++ DI+MP+M
Sbjct: 1 MKRISILIVDDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQRIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQVRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|20808060|ref|NP_623231.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|254478788|ref|ZP_05092156.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
gi|20516641|gb|AAM24835.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
gi|214035300|gb|EEB76006.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
Length = 240
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L AGY+V++ NG +K EE LL+ D+++P+MD
Sbjct: 1 MPYTVLVIEDEIHILELLRYNLEAAGYKVMASENGKEGLEKALEEKPDLLILDLMLPDMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + E ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GLEICKVLKKNEDTKNIPIIMLTARSEEFDKVLGLELGADDYITKPFSVRELLARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|313885587|ref|ZP_07819337.1| transcriptional regulatory protein WalR [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619317|gb|EFR30756.1| transcriptional regulatory protein WalR [Eremococcus coleocola
ACS-139-V-Col8]
Length = 234
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ + + L GY++V+ +G A ++ +E L+L D+++P+ G+
Sbjct: 2 HKILVVDDEKPISDIITYTLKNEGYDIVTAFDGEEALEQFEKENPDLVLLDLMLPKKTGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + D + ++ +T + ++KPF R+L V L
Sbjct: 62 EVCREIRK-DSAVPIIMLTAKDSEIDKVVGLELGADDYVTKPFSNRELAARVKASLRR 118
>gi|293603146|ref|ZP_06685580.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
43553]
gi|292818540|gb|EFF77587.1| phosphate regulon response regulator [Achromobacter piechaudii ATCC
43553]
Length = 232
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ + L AG++V+ + A +R E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDADQAQTLIRAELPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ +AR+ E + V+ +T + D ++KPF ++L+ + +L
Sbjct: 61 GLAMARKLRNDERTRAVPVIMLTAKGSEQDKVDGLEAGADDYITKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|221199375|ref|ZP_03572419.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
gi|221205723|ref|ZP_03578738.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
gi|221211588|ref|ZP_03584567.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
gi|221168949|gb|EEE01417.1| DNA-binding response regulator [Burkholderia multivorans CGD1]
gi|221174561|gb|EEE06993.1| DNA-binding response regulator [Burkholderia multivorans CGD2]
gi|221180660|gb|EEE13063.1| DNA-binding response regulator [Burkholderia multivorans CGD2M]
Length = 241
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|70726425|ref|YP_253339.1| respiratory response protein [Staphylococcus haemolyticus JCSC1435]
gi|68447149|dbj|BAE04733.1| staphylococcal respiratory response protein [Staphylococcus
haemolyticus JCSC1435]
Length = 241
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + + + +NG AY+ E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLKRESFTIHEASNGKEAYNLAIENDYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|150389321|ref|YP_001319370.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949183|gb|ABR47711.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 224
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD +R + L G++V +G A K+ +++ D++MP MD
Sbjct: 1 MN-KILIVDDDPHIRELVKVLLRNEGFDVHEAFDGVEALSKLETIKVDMVILDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L R E DL ++ +T + L KPF +LV V LL
Sbjct: 60 GWQLCRELREHY-DLPLLMLTAKGETSQKVKGFQLGTDDYLVKPFEPMELVVRVKALLKR 118
>gi|229148989|ref|ZP_04277234.1| Two-component response regulator [Bacillus cereus m1550]
gi|228634529|gb|EEK91113.1| Two-component response regulator [Bacillus cereus m1550]
Length = 242
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|154685042|ref|YP_001420203.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
gi|154350893|gb|ABS72972.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
Length = 228
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD D+R + L G + + A A + ++ F L++ DI+MP MD
Sbjct: 1 MGTSILIVDDDKDIRNLISVYLENEGIDTQKAEDAAEALKLLEQKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E +L ++ ++ + A L+KPF+ +L+ V L
Sbjct: 61 GIEACMKIREER-NLPIIMLSAKSEDMDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119
>gi|113954022|ref|YP_731785.1| DNA-binding response regulator [Synechococcus sp. CC9311]
gi|113881373|gb|ABI46331.1| DNA-binding response regulator [Synechococcus sp. CC9311]
Length = 248
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + + L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALESFEQCNPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|56477139|ref|YP_158728.1| phosphate regulon transcriptional regulatory protein phoB
[Aromatoleum aromaticum EbN1]
gi|56313182|emb|CAI07827.1| Phosphate regulon transcriptional regulatory protein phoB
[Aromatoleum aromaticum EbN1]
Length = 235
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + +L +AG+ VV ++ A ++R+ L+L D ++P M
Sbjct: 1 MPANILLVEDELAIQELIAASLSRAGHRVVRASDAEEAAQRLRDALPDLVLLDWMLPGMT 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE ARR E ++ ++ +T ++KPF R+L + +L
Sbjct: 61 GIEFARRLRGDERTREIPIIMLTARGEEQDKVAGLESGADDYITKPFSPRELAARITAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|322378052|ref|ZP_08052539.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
gi|321281034|gb|EFX58047.1| DNA-binding response regulator SaeR [Streptococcus sp. M334]
Length = 232
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|294501112|ref|YP_003564812.1| two-component response regulator ResD [Bacillus megaterium QM
B1551]
gi|294351049|gb|ADE71378.1| two-component response regulator ResD [Bacillus megaterium QM
B1551]
Length = 238
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++LL +D+D +RR L L K GY + +G A +K + L++ D++MP +DGI
Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ ++ E ++ +T + KPF R++V V LL +
Sbjct: 65 EVCKQIREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123
>gi|300780471|ref|ZP_07090327.1| response regulator [Corynebacterium genitalium ATCC 33030]
gi|300534581|gb|EFK55640.1| response regulator [Corynebacterium genitalium ATCC 33030]
Length = 239
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +D+ ++ L +L G+EV S +G A + RE + D++MP MDG
Sbjct: 9 NVKVLVVDDEPNIVELLTVSLKFQGFEVESAESGQQALEMARELKPEAYILDVMMPGMDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL + D V+F+T AV ++KPF L +++ + +L
Sbjct: 69 FELLGKLRAEGLDAPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRG 128
Query: 122 N 122
N
Sbjct: 129 N 129
>gi|228957669|ref|ZP_04119416.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229108854|ref|ZP_04238459.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229126714|ref|ZP_04255726.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|229149599|ref|ZP_04277831.1| Two-component response regulator [Bacillus cereus m1550]
gi|228633945|gb|EEK90542.1| Two-component response regulator [Bacillus cereus m1550]
gi|228656654|gb|EEL12480.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228674623|gb|EEL29862.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228802011|gb|EEM48881.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 218
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|165870463|ref|ZP_02215118.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|190568741|ref|ZP_03021645.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|164713958|gb|EDR19480.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|190560157|gb|EDV14138.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
Length = 218
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|154508069|ref|ZP_02043711.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
17982]
gi|153797703|gb|EDN80123.1| hypothetical protein ACTODO_00560 [Actinomyces odontolyticus ATCC
17982]
Length = 236
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L +AL G+E + +G A K +++ D+ MP MDG+E
Sbjct: 12 RVLVVDDEAMLADLLSQALRHEGWETATAKDGLDALAKATSFHPDVVILDVQMPRMDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DP+L V+F+T AVA ++KPF L ++ V LL
Sbjct: 72 TLERLRARDPELPVLFLTARDAVADRVQGLRAGADDYVTKPFDLDEVAARVEGLLRR 128
>gi|296133628|ref|YP_003640875.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296032206|gb|ADG82974.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 236
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL+ +D+ + + L K GY V++ +G A ++ E L++ DI++P +
Sbjct: 1 MSKPKILVVDDEQYIVELIRFNLEKEGYTVITAGDGKIALEQTFREKPDLIVLDIMLPGV 60
Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R + ++ +T ++KPF R+LV +
Sbjct: 61 DGLEVCRTLQRDKETQLIPIIMLTAKGEEIDKVLGLELGADDYMTKPFSPRELVARIKAR 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|289168019|ref|YP_003446288.1| response regulator [Streptococcus mitis B6]
gi|288907586|emb|CBJ22423.1| response regulator [Streptococcus mitis B6]
Length = 235
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDTEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|295677872|ref|YP_003606396.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295437715|gb|ADG16885.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 247
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD +R + + L G+ V + NG + ++++E +L++ DI+MPE+D
Sbjct: 1 MNQTILIVDDDPVVRELVSEYLHGRGFNVATLENGLALQRRLQQERPALVVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|163856778|ref|YP_001631076.1| two-component response regulator [Bordetella petrii DSM 12804]
gi|163260506|emb|CAP42808.1| two-component response regulator [Bordetella petrii]
Length = 238
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ EDD + L L GYEV G + ++ + L+ D+++P +D
Sbjct: 1 MSKRILIVEDDVHIADLLQLHLRDEGYEVTHAAEGETGLRQLEAGRWDALVLDLMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA + ++ + ++ L+KPF + +LV + LL
Sbjct: 61 GLEICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARIKALLRR 120
>gi|330447872|ref|ZP_08311520.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328492063|dbj|GAA06017.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 243
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ +DD ++R L + L K G+EV + G + L+L DI+MP DG
Sbjct: 4 SKQVLVVDDDKEIRELLEEYLTKNGFEVQTAAEGEEMKRCLAAGYPDLILLDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D+ ++ +T + ++KPF R L+ + LL
Sbjct: 64 FTLCQHIRK-SSDVPIIMLTAVSDEMDQIIGLEIGADDYIAKPFSPRQLLARIKALLRR 121
>gi|296133876|ref|YP_003641123.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296032454|gb|ADG83222.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 231
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +D+ + + L L K ++V++ NG A + + L+L D+++P++DG
Sbjct: 3 NHKVLVVDDEPKILKILEHTLKKERFQVITAQNGMEAVELAAKVSPDLVLLDLMLPDIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR D+ ++ ++ +KPF +LV + +L
Sbjct: 63 FEVCRRIKSR-SDIPIIVLSAKDDEVDKIVGFKLGIDDYQTKPFSPTELVLRIRAVLRR 120
>gi|227551905|ref|ZP_03981954.1| response regulator [Enterococcus faecium TX1330]
gi|257886932|ref|ZP_05666585.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257895504|ref|ZP_05675157.1| transcriptional regulator [Enterococcus faecium Com12]
gi|257898119|ref|ZP_05677772.1| transcriptional regulator [Enterococcus faecium Com15]
gi|293378369|ref|ZP_06624538.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
gi|293571527|ref|ZP_06682550.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
gi|227178977|gb|EEI59949.1| response regulator [Enterococcus faecium TX1330]
gi|257822986|gb|EEV49918.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257832069|gb|EEV58490.1| transcriptional regulator [Enterococcus faecium Com12]
gi|257836031|gb|EEV61105.1| transcriptional regulator [Enterococcus faecium Com15]
gi|291608393|gb|EFF37692.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
gi|292643233|gb|EFF61374.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
Length = 234
Score = 156 bits (397), Expect = 8e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+V S +G + E+ F ++ D+++P MDG+
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYKVTSAADGGEGLELALEQSFDFIILDVMLPTMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|317130982|ref|YP_004097264.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315475930|gb|ADU32533.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 235
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ + L L K GYEV+ +G A + + L+L DI++P DG
Sbjct: 3 KQKILVVDDEQPIADILKFGLEKDGYEVICAYDGNEAIEMTNKHEPDLILLDIMLPYQDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R + D+ ++ +T + ++KPF R+LV V L
Sbjct: 63 MEVCREVRKKF-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120
>gi|289579453|ref|YP_003478080.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|289529166|gb|ADD03518.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
Length = 231
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ + + L K GY +G A +E+ L++ D+++P++D
Sbjct: 1 MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFSVLRTLRQSM-TIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRR 119
>gi|307704960|ref|ZP_07641848.1| response regulator [Streptococcus mitis SK597]
gi|307709233|ref|ZP_07645692.1| response regulator [Streptococcus mitis SK564]
gi|307620179|gb|EFN99296.1| response regulator [Streptococcus mitis SK564]
gi|307621470|gb|EFO00519.1| response regulator [Streptococcus mitis SK597]
Length = 235
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|239636841|ref|ZP_04677840.1| transcriptional regulatory protein ResD [Staphylococcus warneri
L37603]
gi|239597515|gb|EEQ80013.1| transcriptional regulatory protein ResD [Staphylococcus warneri
L37603]
Length = 241
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E +G AY E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFETHEARDGKEAYQLAMENDYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVATQLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|167769697|ref|ZP_02441750.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
17241]
gi|167668058|gb|EDS12188.1| hypothetical protein ANACOL_01031 [Anaerotruncus colihominis DSM
17241]
Length = 234
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
++IL+ ED+D +R F + L +AGYEVV G A P F + + D++MP MD
Sbjct: 2 KRILVVEDEDVIRDFEVINLKRAGYEVVDVPTGEEAIQVFERNPTHFDVAVLDVMMPGMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + + ++ +T + + ++KPF +LV V+ L
Sbjct: 62 GFEVCRRIREKNSSIGIIMLTAKSQEMDKVNGLMIGADDYVTKPFSPSELVARVDALHRR 121
>gi|149182951|ref|ZP_01861408.1| two-component response regulator [Bacillus sp. SG-1]
gi|148849343|gb|EDL63536.1| two-component response regulator [Bacillus sp. SG-1]
Length = 223
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ DM L L GY V NG A D ++ E L+L DI+MP MD
Sbjct: 1 MN--ILVVDDEKDMVGLLNSYLTSNGYYVFPAGNGREAIDVMKSESIDLVLLDIMMPFMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E A+ D+ ++ +T + KPF ++L+ + L
Sbjct: 59 GLEAAQEIR-TFSDVPIIMLTAKGNEDDRVTGLKIGADDYVVKPFSPKELLARIEAALRR 117
>gi|315282989|ref|ZP_07871272.1| transcriptional regulatory protein ResD [Listeria marthii FSL
S4-120]
gi|313613360|gb|EFR87221.1| transcriptional regulatory protein ResD [Listeria marthii FSL
S4-120]
Length = 238
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELREFKS-TPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|300781686|ref|ZP_07091540.1| response regulator [Corynebacterium genitalium ATCC 33030]
gi|300533393|gb|EFK54454.1| response regulator [Corynebacterium genitalium ATCC 33030]
Length = 232
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GY+V +G A + +E L + D++MP++DG+
Sbjct: 2 KILVVDDEQAVRESLRRSLQFNGYDVALAKDGQEALASIEQEQPDLTVLDVMMPQLDGLG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V LL
Sbjct: 62 VCRELRSSGYDRPILMLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLLRR 118
>gi|228964356|ref|ZP_04125473.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228795340|gb|EEM42830.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 218
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|229189480|ref|ZP_04316497.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228594071|gb|EEK51873.1| Two-component response regulator [Bacillus cereus ATCC 10876]
Length = 218
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|156935054|ref|YP_001438970.1| transcriptional regulator PhoB [Cronobacter sakazakii ATCC BAA-894]
gi|156533308|gb|ABU78134.1| hypothetical protein ESA_02905 [Cronobacter sakazakii ATCC BAA-894]
Length = 229
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|221067477|ref|ZP_03543582.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
gi|264678108|ref|YP_003278015.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|299533688|ref|ZP_07047062.1| osmolarity response regulator [Comamonas testosteroni S44]
gi|220712500|gb|EED67868.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
gi|262208621|gb|ACY32719.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|298718410|gb|EFI59393.1| osmolarity response regulator [Comamonas testosteroni S44]
Length = 243
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+E++ +G + + E L++ D++MP DG+
Sbjct: 10 KILVVDDDARIRDLLRRYLTQEGFEIMIAEDGKALNRILLRETVDLIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRSANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|37813698|gb|AAR04621.1| PhoP [Rhodococcus equi]
Length = 242
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L +L G+EV + NGA DK R L+ D++MP MDG
Sbjct: 18 RVLIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFG 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D V+F+T AV ++KPF L ++V + +L
Sbjct: 78 MLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRR 134
>gi|307710133|ref|ZP_07646577.1| response regulator [Streptococcus mitis SK564]
gi|307619113|gb|EFN98245.1| response regulator [Streptococcus mitis SK564]
Length = 232
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY V+ ++GA A + + +P L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYNVLVAHDGAEALEIFKRKPIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|257884144|ref|ZP_05663797.1| transcriptional regulator [Enterococcus faecium 1,231,501]
gi|257819982|gb|EEV47130.1| transcriptional regulator [Enterococcus faecium 1,231,501]
Length = 234
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+V S +G + E+ F ++ D+++P MDG+
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|262038592|ref|ZP_06011961.1| response regulator MprA [Leptotrichia goodfellowii F0264]
gi|261747461|gb|EEY34931.1| response regulator MprA [Leptotrichia goodfellowii F0264]
Length = 224
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R L L G++V +G + + + L+L D+++P+M
Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDLILLDVMLPKMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R E + ++ +T ++ ++KPF +L+ + LL
Sbjct: 61 GMEVCKRIRE-GSQVPIIMLTAKDEISDKIVGFDYGADDYMTKPFSNEELLARIKALLRR 119
>gi|242373793|ref|ZP_04819367.1| response regulator [Staphylococcus epidermidis M23864:W1]
gi|242348530|gb|EES40132.1| response regulator [Staphylococcus epidermidis M23864:W1]
Length = 241
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASNGKEAYELAMENNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E + ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|70725018|ref|YP_251932.1| response regulator VicR [Staphylococcus haemolyticus JCSC1435]
gi|123776194|sp|Q4LAJ9|WALR_STAHJ RecName: Full=Transcriptional regulatory protein walR
gi|68445742|dbj|BAE03326.1| response regulator, VicR [Staphylococcus haemolyticus JCSC1435]
Length = 233
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|332760677|gb|EGJ90965.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri 4343-70]
Length = 229
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|330873059|gb|EGH07208.1| DNA-binding response regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 245
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAEFRRAFNEEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|319892476|ref|YP_004149351.1| DNA-binding response regulator ResD [Staphylococcus
pseudintermedius HKU10-03]
gi|317162172|gb|ADV05715.1| DNA-binding response regulator ResD [Staphylococcus
pseudintermedius HKU10-03]
gi|323464421|gb|ADX76574.1| transcriptional regulatory protein SrrA [Staphylococcus
pseudintermedius ED99]
Length = 241
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R+ L L + GY + ++G A D + +S +L D+++PEMD
Sbjct: 2 MTNEILVVDDEHRIRKLLKLYLEREGYVIAEASDGREALDMATKYDYSCILLDLMLPEMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A + EL D ++ +T + + KPF R++V V LL
Sbjct: 62 GLEVAVKLREL-KDTPIIMLTAKGEENNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 120
>gi|291548597|emb|CBL24859.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 233
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ +G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTKLVYDGEDALAAFDSYQPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ + V + KPF +++V V +L
Sbjct: 64 YQVCREIRSK-AATPIIMLSAKSEVFDKVLGLELGADDYIMKPFDPKEMVARVRAVLRR 121
>gi|260596767|ref|YP_003209338.1| transcriptional regulator PhoB [Cronobacter turicensis z3032]
gi|260215944|emb|CBA28550.1| Phosphate regulon transcriptional regulatory protein phoB
[Cronobacter turicensis z3032]
Length = 229
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHIKREALTREIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|257126795|ref|YP_003164909.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
gi|257050734|gb|ACV39918.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
Length = 226
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R L L G++V +G + + + ++L D+++P+M
Sbjct: 1 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R E + ++ +T ++ ++KPF +L+ + LL
Sbjct: 61 GMEVCKRIRE-TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRR 119
>gi|255527025|ref|ZP_05393916.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186975|ref|ZP_06855375.1| regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255509281|gb|EET85630.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296048413|gb|EFG87847.1| regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 232
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ ++R + L GY+V+ ++G A ++ + L++ DI+MP M
Sbjct: 1 MSKETILVVDDEKEIRNLIGIYLENEGYKVIKASDGCEALKVLKSQQVHLIILDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E ++ ++ ++ ++KPF+ +L+ V L
Sbjct: 61 DGIEACIKIRE-HKNMPIIMLSAKGEDMDKIMGLTTGADDYITKPFNPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|170703741|ref|ZP_02894459.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|170131352|gb|EDS99961.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
Length = 241
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|218132752|ref|ZP_03461556.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
43243]
gi|217992478|gb|EEC58481.1| hypothetical protein BACPEC_00613 [Bacteroides pectinophilus ATCC
43243]
Length = 238
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ ED++ + L +G+EV +G S + + F++++ D+++P +D
Sbjct: 9 MSEKVLIVEDEESIAELEKDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E + ++ ++ ++KPF +LV V L
Sbjct: 69 GFEICRQVREQ-KNTPIIIVSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 127
>gi|330974665|gb|EGH74731.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 193
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA ++P LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|237786072|ref|YP_002906777.1| two-component system response regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758984|gb|ACR18234.1| two-component system, response regulator [Corynebacterium
kroppenstedtii DSM 44385]
Length = 248
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L+ L G++ V +GA A E L+L D+++P M+
Sbjct: 25 MKTKILVVDDDPAIAEMLMIVLQGEGFDTVVVGDGAEAVTAASNEDPDLILLDVMLPSMN 84
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + + ++ ++ ++KPF ++LV V L
Sbjct: 85 GVDVCRAIRK-TSGVPIVMLSARTDTVDVVLGLESGADDYINKPFKPKELVARVRAQLRR 143
Query: 121 K 121
+
Sbjct: 144 R 144
>gi|289577696|ref|YP_003476323.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|297544009|ref|YP_003676311.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|289527409|gb|ADD01761.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|296841784|gb|ADH60300.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 225
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D++ + L +L + G+EV + +G DKVR + L++ DI++P++DG
Sbjct: 2 ERLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T L+KPF+ R+L+ + LL
Sbjct: 62 SVCREIR-TFSNIPIIMLTARGEDVDRIVGIEIGADDYLAKPFNTRELIARIRALLRR 118
>gi|228963749|ref|ZP_04124890.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228795894|gb|EEM43361.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 242
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|283798623|ref|ZP_06347776.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|291073609|gb|EFE10973.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|295090650|emb|CBK76757.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 237
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K YE +G A +L+L D+++P MDG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECYETKIVGDGEEALKVFPVFKPNLILLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCRELRS-SSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|126650116|ref|ZP_01722349.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
gi|169827294|ref|YP_001697452.1| transcriptional regulatory protein [Lysinibacillus sphaericus
C3-41]
gi|126593288|gb|EAZ87250.1| DNA-binding response regulator ResD [Bacillus sp. B14905]
gi|168991782|gb|ACA39322.1| Transcriptional regulatory protein [Lysinibacillus sphaericus
C3-41]
Length = 240
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+D +RR L L + GY V NG A +K E+ + +L DI+MPE DG+E+
Sbjct: 9 VLVVDDEDRIRRLLKMYLEREGYLVDEAENGEQAIEKSLEKEYHCILLDIMMPEKDGLEV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ +T A + KPF R++V V +L
Sbjct: 69 CAEIRER-AATPIILLTAKGEEANRVQGFELGADDYIVKPFSPREVVLRVKAILRR 123
>gi|54303563|ref|YP_133556.1| putative DNA-binding response regulator [Photobacterium profundum
SS9]
gi|46916994|emb|CAG23756.1| putative DNA-binding response regulator [Photobacterium profundum
SS9]
Length = 241
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ +DD ++R L + L K+G+ V + G ++ L+L D++MP DG
Sbjct: 4 NKKVLVVDDDQEIRELLDEYLTKSGFTVTTAAEGEEMKRRLAGGYPDLILMDVMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D+ ++ +T + ++KPF R L+ + LL
Sbjct: 64 FTLCQYIRK-TSDVPIIMLTAVSDEMDQIIGLELGADDYIAKPFSPRQLMARIKALLRR 121
>gi|288905747|ref|YP_003430969.1| essential two-component response regulator [Streptococcus
gallolyticus UCN34]
gi|306831845|ref|ZP_07465001.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325978780|ref|YP_004288496.1| two-component response regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732473|emb|CBI14045.1| conserved essential two-component response regulator [Streptococcus
gallolyticus UCN34]
gi|304426043|gb|EFM29159.1| response regulator [Streptococcus gallolyticus subsp. gallolyticus
TX20005]
gi|325178708|emb|CBZ48752.1| two-component response regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 236
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYE V+ +G A K EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYETVTAFDGREAITKFEEEDPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|167465147|ref|ZP_02330236.1| two-component response regulator [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322381788|ref|ZP_08055742.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321154176|gb|EFX46498.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 237
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ +RR L L K GY++ +G +A ++ + L+L DI++P MDG E+
Sbjct: 7 ILVVDDEERIRRLLRMYLEKEGYDIEESQDGETALKLAMDKDYDLILLDIMLPGMDGTEV 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + V+ +T + KPF R+++ V +L +
Sbjct: 67 CARLRQ-FKTTPVIMLTAKGEETNRVHGFEVGADDYVVKPFSPREVIYRVKAILRRSS 123
>gi|110800218|ref|YP_696604.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|168204892|ref|ZP_02630897.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|168208625|ref|ZP_02634250.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|168214155|ref|ZP_02639780.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|168215550|ref|ZP_02641175.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|182624373|ref|ZP_02952157.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|110674865|gb|ABG83852.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|170663696|gb|EDT16379.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170713053|gb|EDT25235.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|170714338|gb|EDT26520.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|177910376|gb|EDT72753.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|182382004|gb|EDT79483.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 223
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ ED+ +R + K G+ V+ ++G A E L + DI+MP++D
Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E+ + ++ +T + ++KPF + L+ + LL
Sbjct: 61 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRR 119
>gi|46908182|ref|YP_014571.1| DNA-binding response regulator ResD [Listeria monocytogenes
serotype 4b str. F2365]
gi|47093377|ref|ZP_00231144.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
H7858]
gi|226224553|ref|YP_002758660.1| two-component response regulator (ResD) [Listeria monocytogenes
Clip81459]
gi|254825556|ref|ZP_05230557.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
J1-194]
gi|254852850|ref|ZP_05242198.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
R2-503]
gi|254931880|ref|ZP_05265239.1| DNA-binding response regulator ResD [Listeria monocytogenes
HPB2262]
gi|254992998|ref|ZP_05275188.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
J2-064]
gi|255520089|ref|ZP_05387326.1| two-component response regulator (ResD) [Listeria monocytogenes FSL
J1-175]
gi|300763740|ref|ZP_07073737.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
N1-017]
gi|46881452|gb|AAT04748.1| DNA-binding response regulator ResD [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018248|gb|EAL09014.1| DNA-binding response regulator ResD [Listeria monocytogenes str. 4b
H7858]
gi|225877015|emb|CAS05724.1| Putative two-component response regulator (ResD) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258606183|gb|EEW18791.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
R2-503]
gi|293583431|gb|EFF95463.1| DNA-binding response regulator ResD [Listeria monocytogenes
HPB2262]
gi|293594797|gb|EFG02558.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
J1-194]
gi|300515476|gb|EFK42526.1| DNA-binding response regulator ResD [Listeria monocytogenes FSL
N1-017]
gi|328466296|gb|EGF37453.1| two-component response regulator (ResD) [Listeria monocytogenes
1816]
gi|328472790|gb|EGF43639.1| two-component response regulator (ResD) [Listeria monocytogenes
220]
gi|332312389|gb|EGJ25484.1| Transcriptional regulatory protein resD [Listeria monocytogenes
str. Scott A]
Length = 238
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELREFKS-TPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|302336523|ref|YP_003801730.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
gi|301320363|gb|ADK68850.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
Length = 241
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ +R + L + GY V +G SA ++ + F L++ D+++P++ G
Sbjct: 6 KRILLVEDEKAIRDAVAAYLEREGYVVRGVGDGQSALEEFEKHSFDLIVLDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E + ++ +T V + KPF R+LV V LL +
Sbjct: 66 RVCRAVRE-TSSVPIIMLTAKGEVEDRIIGLELGADDYVIKPFSPRELVARVRALLRRAH 124
>gi|134276940|ref|YP_537039.2| Ycf27 [Porphyra yezoensis]
gi|125991250|sp|Q1XDC9|YCF27_PORYE RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
Length = 243
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALLVFRKEYPSLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T V + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>gi|73748816|ref|YP_308055.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
gi|73660532|emb|CAI83139.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
Length = 227
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D+ + L L + G+ V++ +G +A K EE L++ D+++PE+
Sbjct: 1 MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + ++ +T + ++KPF ++LV V L
Sbjct: 61 GWDVCREIRKE-SHVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRR 119
>gi|15826987|ref|NP_301250.1| two-component response regulator [Mycobacterium leprae TN]
gi|221229465|ref|YP_002502881.1| putative two-component response regulator [Mycobacterium leprae
Br4923]
gi|81856515|sp|Q9CD68|MPRA_MYCLE RecName: Full=Response regulator mprA; AltName: Full=Mycobacterial
persistence regulator A
gi|13092534|emb|CAC29682.1| putative two-component response regulator [Mycobacterium leprae]
gi|219932572|emb|CAR70267.1| putative two-component response regulator [Mycobacterium leprae
Br4923]
Length = 228
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +DD +R L ++L GY V N+G A + V + L+ D++MP +DG+E
Sbjct: 2 RILAVDDDRAVRESLRRSLSFNGYSVELANDGVEALEMVARDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARIRALLRR 118
>gi|297545525|ref|YP_003677827.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296843300|gb|ADH61816.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 227
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KI + +DD ++ + L K G+EV +G +A K++ P L++ DI++P +DG
Sbjct: 4 NPKIYVVDDDKNICEIVSLYLEKEGFEVEQIYDGQTALKKIQTNPPRLVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++ +T + + KPF ++L+ V +L
Sbjct: 64 IALCREVRK-FSKVPIIMLTAKGDTLDKVLALEIGADDYIVKPFDGKELIARVKAVLRR 121
>gi|531494|emb|CAA56927.1| phoB [Shigella flexneri]
Length = 229
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|15901089|ref|NP_345693.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
gi|111657843|ref|ZP_01408558.1| hypothetical protein SpneT_02000966 [Streptococcus pneumoniae
TIGR4]
gi|116515650|ref|YP_816556.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
gi|148985122|ref|ZP_01818361.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
gi|148989249|ref|ZP_01820629.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
gi|148993837|ref|ZP_01823239.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
gi|148998657|ref|ZP_01826096.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
gi|149002595|ref|ZP_01827527.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
gi|149007115|ref|ZP_01830784.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
gi|149012278|ref|ZP_01833347.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
gi|149019219|ref|ZP_01834581.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
gi|168484877|ref|ZP_02709822.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1873-00]
gi|168486549|ref|ZP_02711057.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1087-00]
gi|168489055|ref|ZP_02713254.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP195]
gi|168491148|ref|ZP_02715291.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC0288-04]
gi|168493149|ref|ZP_02717292.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC3059-06]
gi|168577194|ref|ZP_02723003.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae MLV-016]
gi|169832995|ref|YP_001694658.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus pneumoniae Hungary19A-6]
gi|194397986|ref|YP_002037828.1| response regulator [Streptococcus pneumoniae G54]
gi|221231922|ref|YP_002511074.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
gi|225854693|ref|YP_002736205.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae JJA]
gi|225856894|ref|YP_002738405.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae P1031]
gi|225859008|ref|YP_002740518.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 70585]
gi|225860939|ref|YP_002742448.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
gi|237649929|ref|ZP_04524181.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CCRI 1974]
gi|237822522|ref|ZP_04598367.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CCRI 1974M2]
gi|298230882|ref|ZP_06964563.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254363|ref|ZP_06977949.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298502777|ref|YP_003724717.1| DNA-binding response regulator [Streptococcus pneumoniae
TCH8431/19A]
gi|303254277|ref|ZP_07340386.1| response regulator protein [Streptococcus pneumoniae BS455]
gi|303258862|ref|ZP_07344841.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP-BS293]
gi|303261546|ref|ZP_07347493.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP14-BS292]
gi|303264216|ref|ZP_07350136.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS397]
gi|303266153|ref|ZP_07352046.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS457]
gi|303268120|ref|ZP_07353920.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS458]
gi|307067876|ref|YP_003876842.1| CheY-like receiver/winged-helix DNA-binding domain-containing
response regulator [Streptococcus pneumoniae AP200]
gi|307127185|ref|YP_003879216.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 670-6B]
gi|14193094|gb|AAK55817.1|AF219111_1 putative response regulator [Streptococcus pneumoniae]
gi|5830523|emb|CAB54568.1| response regulator [Streptococcus pneumoniae]
gi|14972708|gb|AAK75333.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
gi|116076226|gb|ABJ53946.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
gi|147755494|gb|EDK62542.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
gi|147759206|gb|EDK66199.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
gi|147761419|gb|EDK68385.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
gi|147763604|gb|EDK70539.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
gi|147922567|gb|EDK73685.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
gi|147925227|gb|EDK76306.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
gi|147927662|gb|EDK78687.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
gi|147931089|gb|EDK82068.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
gi|168995497|gb|ACA36109.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Hungary19A-6]
gi|172041974|gb|EDT50020.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1873-00]
gi|183570421|gb|EDT90949.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC1087-00]
gi|183572520|gb|EDT93048.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP195]
gi|183574479|gb|EDT95007.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC0288-04]
gi|183576730|gb|EDT97258.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae CDC3059-06]
gi|183577211|gb|EDT97739.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae MLV-016]
gi|194357653|gb|ACF56101.1| response regulator TCS02 [Streptococcus pneumoniae G54]
gi|220674382|emb|CAR68932.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
gi|225721755|gb|ACO17609.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 70585]
gi|225722501|gb|ACO18354.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae JJA]
gi|225724998|gb|ACO20850.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae P1031]
gi|225727250|gb|ACO23101.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae Taiwan19F-14]
gi|298238372|gb|ADI69503.1| DNA-binding response regulator [Streptococcus pneumoniae
TCH8431/19A]
gi|301794310|emb|CBW36735.1| response regulator protein [Streptococcus pneumoniae INV104]
gi|301800148|emb|CBW32753.1| response regulator protein [Streptococcus pneumoniae OXC141]
gi|301801917|emb|CBW34641.1| response regulator protein [Streptococcus pneumoniae INV200]
gi|302598771|gb|EFL65808.1| response regulator protein [Streptococcus pneumoniae BS455]
gi|302637126|gb|EFL67614.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP14-BS292]
gi|302639805|gb|EFL70261.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae SP-BS293]
gi|302642337|gb|EFL72684.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS458]
gi|302644323|gb|EFL74577.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS457]
gi|302646028|gb|EFL76255.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae BS397]
gi|306409413|gb|ADM84840.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Streptococcus
pneumoniae AP200]
gi|306484247|gb|ADM91116.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Streptococcus pneumoniae 670-6B]
gi|332073565|gb|EGI84044.1| response regulator [Streptococcus pneumoniae GA17570]
gi|332074837|gb|EGI85309.1| response regulator [Streptococcus pneumoniae GA41301]
gi|332200675|gb|EGJ14747.1| response regulator [Streptococcus pneumoniae GA41317]
gi|332201690|gb|EGJ15760.1| response regulator [Streptococcus pneumoniae GA47368]
gi|332203075|gb|EGJ17143.1| response regulator [Streptococcus pneumoniae GA47901]
Length = 234
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|228969212|ref|ZP_04130100.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228790479|gb|EEM38192.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 233
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124
>gi|121611277|ref|YP_999084.1| osmolarity response regulator [Verminephrobacter eiseniae EF01-2]
gi|121555917|gb|ABM60066.1| two component transcriptional regulator, winged helix family
[Verminephrobacter eiseniae EF01-2]
Length = 243
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G++V++ +G + + E +++ D++MP DG+
Sbjct: 10 KVLVVDDDARIRDLLHRYLTQEGFDVMAAEDGKALNRLLLRETVDIIVLDLMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 70 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLGKPFNPRELLARIHAVLRRR 127
>gi|75906526|ref|YP_320822.1| two component LuxR family transcriptional regulator [Anabaena
variabilis ATCC 29413]
gi|75700251|gb|ABA19927.1| two component transcriptional regulator, LuxR family [Anabaena
variabilis ATCC 29413]
Length = 231
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E L V+F+T + L KPF +LV + LL
Sbjct: 61 GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIIENLL 120
Query: 119 TIKN 122
T +N
Sbjct: 121 TRRN 124
>gi|307705407|ref|ZP_07642265.1| response regulator [Streptococcus mitis SK597]
gi|307621038|gb|EFO00117.1| response regulator [Streptococcus mitis SK597]
Length = 231
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + + +P L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFQRKPIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|238765163|ref|ZP_04626095.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
kristensenii ATCC 33638]
gi|238696597|gb|EEP89382.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
kristensenii ATCC 33638]
Length = 279
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170
Query: 119 TI 120
Sbjct: 171 RR 172
>gi|228923607|ref|ZP_04086887.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228836076|gb|EEM81437.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 232
Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHVIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|332800512|ref|YP_004462011.1| winged helix family two component transcriptional regulator
[Tepidanaerobacter sp. Re1]
gi|332698247|gb|AEE92704.1| two component transcriptional regulator, winged helix family
[Tepidanaerobacter sp. Re1]
Length = 229
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + L L K GY V++ +G A + +E L+L DI++P+ D
Sbjct: 1 MNEKILVVDDEKPIVDILRYNLSKEGYNVLAAYDGDEAINIALKEDPDLILLDIMLPKQD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFSVCKKLREK-ITSPIIMLTARGEEVDKVLGLELGADDYITKPFSMRELMARVKANLRR 119
>gi|320181620|gb|EFW56535.1| transcriptional regulator PhoB [Shigella boydii ATCC 9905]
Length = 229
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|315303906|ref|ZP_07874373.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
F6-596]
gi|313627723|gb|EFR96389.1| transcriptional regulatory protein ResD [Listeria ivanovii FSL
F6-596]
Length = 238
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ ++L+ +D+D +RR L L + Y + ++G A D + ++L D++MP
Sbjct: 1 MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALDMALNNNYEVILLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R E V+ +T A + KPF R++V V +L
Sbjct: 61 KDGIEVCRELRE-FKATPVVMLTAKGEEANRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|313606643|gb|EFR83406.1| heme response regulator HssR [Listeria monocytogenes FSL F2-208]
Length = 222
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + + + L G+ V+ +G A V E L + D++MP MDG EL
Sbjct: 1 ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMDGFEL 60
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ PD+ V+ +T A+A ++KPF +LV + LL N
Sbjct: 61 CQKIRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRRSN 118
>gi|297529461|ref|YP_003670736.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297252713|gb|ADI26159.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 224
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+++MR + L AG+ + +G A + + P +L D++MP+
Sbjct: 1 MSERTVLIVDDEEEMRLLVGMYLENAGFRCLEAGDGEEALVLLSQHPVDAVLLDVMMPKQ 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R E D+ ++F+T + KPF +L+ + +L
Sbjct: 61 DGFAVCARIREQ-SDVPILFLTALGEEWDKVKGLKLGGDDYIVKPFSPGELIARLEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|224539062|ref|ZP_03679601.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519307|gb|EEF88412.1| hypothetical protein BACCELL_03962 [Bacteroides cellulosilyticus
DSM 14838]
Length = 243
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED+ + L L + GY+ + +G R F L+++DI++P+MDG
Sbjct: 17 HTILIIEDEPRVASLLKNGLEENGYQTMIAYDGVMGLRLFRVHTFDLVISDIILPKMDGF 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
EL + + +P + ++ +T + D + KPF R+L + LL N
Sbjct: 77 ELCKEIRKTNPGIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRNN 136
>gi|88800953|ref|ZP_01116505.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Reinekea sp. MED297]
gi|88776328|gb|EAR07551.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Reinekea sp. MED297]
Length = 266
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DD ++R L + L K G+ V S G +K+ F L++ DI+MP DG
Sbjct: 33 KRLLVVDDDLEIRELLTEYLTKNGFRVDSAAEGQQMREKLNAGHFDLIVLDIMMPGDDGF 92
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ ++ +T A + KPF+ R+L+ + +L
Sbjct: 93 TLCKEVR-TKSNIPIIMLTAGADETDRIIGLELGADDYVGKPFNPRELLARIKAVLRR 149
>gi|307708758|ref|ZP_07645220.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
gi|307615124|gb|EFN94335.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261]
Length = 235
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|257069207|ref|YP_003155462.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
gi|256560025|gb|ACU85872.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
Length = 231
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L GYEV + +GASA + L+L D+++P MDGIE
Sbjct: 9 RILVVDDDQAIAEMVGIVLRGKGYEVATSPDGASALETFPRLRPDLVLLDLMLPGMDGIE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T A + L+KPF +LV + +
Sbjct: 69 VCRRLRRE-SGVPIIMLTARTDTADVVEGLEAGADDYLTKPFEPEELVARIKARVRR 124
>gi|69248477|ref|ZP_00604751.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|257878623|ref|ZP_05658276.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257883117|ref|ZP_05662770.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257891864|ref|ZP_05671517.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|257894434|ref|ZP_05674087.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|258616852|ref|ZP_05714622.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecium DO]
gi|260559336|ref|ZP_05831518.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|261208012|ref|ZP_05922690.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289566892|ref|ZP_06447299.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium D344SRF]
gi|293556475|ref|ZP_06675049.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
gi|293563844|ref|ZP_06678277.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
gi|293567266|ref|ZP_06678620.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|294615582|ref|ZP_06695438.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
gi|294619807|ref|ZP_06699197.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1679]
gi|294622907|ref|ZP_06701820.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|314938083|ref|ZP_07845391.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
gi|314943605|ref|ZP_07850362.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|314949242|ref|ZP_07852591.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
gi|314952608|ref|ZP_07855600.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|314992456|ref|ZP_07857878.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|314997382|ref|ZP_07862337.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|68194414|gb|EAN08919.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|257812851|gb|EEV41609.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257818775|gb|EEV46103.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257828224|gb|EEV54850.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|257830813|gb|EEV57420.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|260074696|gb|EEW63016.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|260077770|gb|EEW65483.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289161298|gb|EFD09191.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium D344SRF]
gi|291590015|gb|EFF21809.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|291591525|gb|EFF23178.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
gi|291593940|gb|EFF25424.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1679]
gi|291597679|gb|EFF28832.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|291601354|gb|EFF31632.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
gi|291604214|gb|EFF33715.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
gi|313588550|gb|EFR67395.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|313592998|gb|EFR71843.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|313595276|gb|EFR74121.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|313597723|gb|EFR76568.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|313642572|gb|EFS07152.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
gi|313644383|gb|EFS08963.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
Length = 234
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+V S +G + E+ F ++ D+++P MDG+
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYKVTSATDGGEGLELALEQSFDFIILDVMLPTMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITQRLRQEKNETPILMLTAKDDQVDRIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|319653605|ref|ZP_08007704.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
gi|317394804|gb|EFV75543.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
Length = 231
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D++++ + L K GY V+ ++G A V + LL+ DI+MP+MDG E+
Sbjct: 6 ILIADDEEEIADLIAIHLEKEGYHVIKASDGQEAVRIVETQSIDLLVLDIMMPKMDGYEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E ++ ++F++ + ++KPF +LV VN L
Sbjct: 66 TRRIREQH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFTPIELVARVNAQLRR 120
>gi|172040225|ref|YP_001799939.1| two-component system response regulator MprA [Corynebacterium
urealyticum DSM 7109]
gi|171851529|emb|CAQ04505.1| two-component system response regulator MprA [Corynebacterium
urealyticum DSM 7109]
Length = 231
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L ++L GY +V +G A KV+ E +++ D++MP++DG+E
Sbjct: 2 KILVVDDDPAVRESLRRSLIFNGYSIVLAADGEEALAKVQSERPDMVILDVMMPKLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T +V+ L+KPF L +L+ L+
Sbjct: 62 VCRELRSQGEDTPILLLTARDSVSERVAGLDAGADDYLTKPFALEELLARTRSLVRR 118
>gi|66044362|ref|YP_234203.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|63255069|gb|AAY36165.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
Length = 245
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA ++P LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDQPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|15800125|ref|NP_286137.1| transcriptional regulator PhoB [Escherichia coli O157:H7 EDL933]
gi|15829703|ref|NP_308476.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
Sakai]
gi|16128384|ref|NP_414933.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K-12 substr.
MG1655]
gi|82542888|ref|YP_406835.1| transcriptional regulator PhoB [Shigella boydii Sb227]
gi|89107269|ref|AP_001049.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K-12 substr.
W3110]
gi|91209466|ref|YP_539452.1| transcriptional regulator PhoB [Escherichia coli UTI89]
gi|117622660|ref|YP_851573.1| transcriptional regulator PhoB [Escherichia coli APEC O1]
gi|157154834|ref|YP_001461578.1| transcriptional regulator PhoB [Escherichia coli E24377A]
gi|157159917|ref|YP_001457235.1| transcriptional regulator PhoB [Escherichia coli HS]
gi|168749852|ref|ZP_02774874.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4113]
gi|168756932|ref|ZP_02781939.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4401]
gi|168761596|ref|ZP_02786603.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4501]
gi|168768341|ref|ZP_02793348.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4486]
gi|168776304|ref|ZP_02801311.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4196]
gi|168783256|ref|ZP_02808263.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4076]
gi|168786237|ref|ZP_02811244.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC869]
gi|168800273|ref|ZP_02825280.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC508]
gi|170021229|ref|YP_001726183.1| transcriptional regulator PhoB [Escherichia coli ATCC 8739]
gi|170079985|ref|YP_001729305.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K-12 substr.
DH10B]
gi|170684203|ref|YP_001742532.1| transcriptional regulator PhoB [Escherichia coli SMS-3-5]
gi|170768000|ref|ZP_02902453.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia albertii TW07627]
gi|187733926|ref|YP_001879107.1| transcriptional regulator PhoB [Shigella boydii CDC 3083-94]
gi|188493884|ref|ZP_03001154.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 53638]
gi|191166743|ref|ZP_03028570.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B7A]
gi|191173531|ref|ZP_03035058.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli F11]
gi|193065166|ref|ZP_03046239.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E22]
gi|193068711|ref|ZP_03049672.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E110019]
gi|194428827|ref|ZP_03061362.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B171]
gi|194432677|ref|ZP_03064963.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
dysenteriae 1012]
gi|194438843|ref|ZP_03070928.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 101-1]
gi|195938540|ref|ZP_03083922.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
EC4024]
gi|208807385|ref|ZP_03249722.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4206]
gi|208815127|ref|ZP_03256306.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4045]
gi|208823163|ref|ZP_03263481.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4042]
gi|209398675|ref|YP_002269037.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4115]
gi|209917610|ref|YP_002291694.1| transcriptional regulator PhoB [Escherichia coli SE11]
gi|215485480|ref|YP_002327911.1| transcriptional regulator PhoB [Escherichia coli O127:H6 str.
E2348/69]
gi|217326124|ref|ZP_03442208.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. TW14588]
gi|218552961|ref|YP_002385874.1| transcriptional regulator PhoB [Escherichia coli IAI1]
gi|218557308|ref|YP_002390221.1| transcriptional regulator PhoB [Escherichia coli S88]
gi|218688261|ref|YP_002396473.1| transcriptional regulator PhoB [Escherichia coli ED1a]
gi|218693859|ref|YP_002401526.1| transcriptional regulator PhoB [Escherichia coli 55989]
gi|218698697|ref|YP_002406326.1| transcriptional regulator PhoB [Escherichia coli IAI39]
gi|218703680|ref|YP_002411199.1| transcriptional regulator PhoB [Escherichia coli UMN026]
gi|227884595|ref|ZP_04002400.1| transcriptional regulator PhoB [Escherichia coli 83972]
gi|238899687|ref|YP_002925483.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli BW2952]
gi|253774616|ref|YP_003037447.1| transcriptional regulator PhoB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160466|ref|YP_003043574.1| transcriptional regulator PhoB [Escherichia coli B str. REL606]
gi|254791577|ref|YP_003076414.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
TW14359]
gi|256020366|ref|ZP_05434231.1| transcriptional regulator PhoB [Shigella sp. D9]
gi|256023984|ref|ZP_05437849.1| transcriptional regulator PhoB [Escherichia sp. 4_1_40B]
gi|260842597|ref|YP_003220375.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
12009]
gi|260853619|ref|YP_003227510.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
11368]
gi|260866558|ref|YP_003232960.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
11128]
gi|261223875|ref|ZP_05938156.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli O157:H7 str.
FRIK2000]
gi|261256411|ref|ZP_05948944.1| DNA-binding response regulator PhoB [Escherichia coli O157:H7 str.
FRIK966]
gi|291281302|ref|YP_003498120.1| Positive response regulator for pho regulon [Escherichia coli
O55:H7 str. CB9615]
gi|293403516|ref|ZP_06647607.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli FVEC1412]
gi|293408543|ref|ZP_06652382.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B354]
gi|293413651|ref|ZP_06656300.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B185]
gi|293418465|ref|ZP_06660900.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B088]
gi|298379128|ref|ZP_06989009.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
gi|300820364|ref|ZP_07100516.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 119-7]
gi|300900462|ref|ZP_07118630.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 198-1]
gi|300903338|ref|ZP_07121266.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 84-1]
gi|300918223|ref|ZP_07134829.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 115-1]
gi|300924116|ref|ZP_07140109.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 182-1]
gi|300930309|ref|ZP_07145721.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 187-1]
gi|300936383|ref|ZP_07151311.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 21-1]
gi|300947953|ref|ZP_07162099.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 116-1]
gi|300957961|ref|ZP_07170127.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 175-1]
gi|300988101|ref|ZP_07178538.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 45-1]
gi|300997414|ref|ZP_07181754.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 200-1]
gi|301025440|ref|ZP_07188990.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 69-1]
gi|301025776|ref|ZP_07189288.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 196-1]
gi|301049597|ref|ZP_07196549.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 185-1]
gi|301301545|ref|ZP_07207680.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 124-1]
gi|301330743|ref|ZP_07223344.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 78-1]
gi|301647317|ref|ZP_07247131.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 146-1]
gi|306813135|ref|ZP_07447328.1| transcriptional regulator PhoB [Escherichia coli NC101]
gi|307137041|ref|ZP_07496397.1| transcriptional regulator PhoB [Escherichia coli H736]
gi|307312226|ref|ZP_07591862.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|309794878|ref|ZP_07689299.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 145-7]
gi|312964580|ref|ZP_07778836.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 2362-75]
gi|312970492|ref|ZP_07784673.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 1827-70]
gi|331640913|ref|ZP_08342048.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H736]
gi|331645570|ref|ZP_08346674.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli M605]
gi|331651327|ref|ZP_08352352.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli M718]
gi|331661771|ref|ZP_08362694.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA143]
gi|331666746|ref|ZP_08367620.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA271]
gi|331671945|ref|ZP_08372741.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA280]
gi|331676064|ref|ZP_08376776.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H591]
gi|331681792|ref|ZP_08382425.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H299]
gi|332281544|ref|ZP_08393957.1| transcriptional regulator PhoB [Shigella sp. D9]
gi|84029275|sp|P0AFJ6|PHOB_ECO57 RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|84029276|sp|P0AFJ5|PHOB_ECOLI RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|12513245|gb|AAG54745.1|AE005219_1 positive response regulator for pho regulon, sensor is PhoR (or
CreC) [Escherichia coli O157:H7 str. EDL933]
gi|42388|emb|CAA27659.1| unnamed protein product [Escherichia coli]
gi|1657595|gb|AAB18123.1| phosphate regulon transcriptional regulatory protein phoB
[Escherichia coli str. K-12 substr. MG1655]
gi|1786599|gb|AAC73502.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K-12 substr.
MG1655]
gi|13359906|dbj|BAB33872.1| positive response regulator for pho regulon PhoB [Escherichia coli
O157:H7 str. Sakai]
gi|16209152|gb|AAL09901.1| PhoB [CRIM plasmid pAH150]
gi|81244299|gb|ABB65007.1| positive response regulator for pho regulon [Shigella boydii Sb227]
gi|85674539|dbj|BAE76179.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K12 substr.
W3110]
gi|91071040|gb|ABE05921.1| positive response regulator for pho regulon [Escherichia coli
UTI89]
gi|115511784|gb|ABI99858.1| positive response regulator for pho regulon [Escherichia coli APEC
O1]
gi|157065597|gb|ABV04852.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli HS]
gi|157076864|gb|ABV16572.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E24377A]
gi|169756157|gb|ACA78856.1| two component transcriptional regulator, winged helix family
[Escherichia coli ATCC 8739]
gi|169887820|gb|ACB01527.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli str. K-12 substr.
DH10B]
gi|170123488|gb|EDS92419.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia albertii TW07627]
gi|170521921|gb|ACB20099.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli SMS-3-5]
gi|187430918|gb|ACD10192.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
boydii CDC 3083-94]
gi|187768306|gb|EDU32150.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4196]
gi|188015917|gb|EDU54039.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4113]
gi|188489083|gb|EDU64186.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 53638]
gi|188999370|gb|EDU68356.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4076]
gi|189356009|gb|EDU74428.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4401]
gi|189362392|gb|EDU80811.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4486]
gi|189368045|gb|EDU86461.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4501]
gi|189373726|gb|EDU92142.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC869]
gi|189377396|gb|EDU95812.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC508]
gi|190903254|gb|EDV62976.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B7A]
gi|190906240|gb|EDV65852.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli F11]
gi|192927140|gb|EDV81761.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E22]
gi|192958074|gb|EDV88516.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E110019]
gi|194413130|gb|EDX29417.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B171]
gi|194419238|gb|EDX35321.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
dysenteriae 1012]
gi|194422137|gb|EDX38139.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 101-1]
gi|208727186|gb|EDZ76787.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4206]
gi|208731775|gb|EDZ80463.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4045]
gi|208737356|gb|EDZ85040.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4042]
gi|209160075|gb|ACI37508.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. EC4115]
gi|209744234|gb|ACI70424.1| positive response regulator for pho regulon PhoB [Escherichia coli]
gi|209744236|gb|ACI70425.1| positive response regulator for pho regulon PhoB [Escherichia coli]
gi|209744238|gb|ACI70426.1| positive response regulator for pho regulon PhoB [Escherichia coli]
gi|209744240|gb|ACI70427.1| positive response regulator for pho regulon PhoB [Escherichia coli]
gi|209744242|gb|ACI70428.1| positive response regulator for pho regulon PhoB [Escherichia coli]
gi|209910869|dbj|BAG75943.1| two-component response regulator [Escherichia coli SE11]
gi|213521171|gb|ACJ50526.1| PhoB [Escherichia coli]
gi|215263552|emb|CAS07882.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli O127:H6 str.
E2348/69]
gi|217322345|gb|EEC30769.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli O157:H7 str. TW14588]
gi|218350591|emb|CAU96281.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli 55989]
gi|218359729|emb|CAQ97270.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli IAI1]
gi|218364077|emb|CAR01742.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli S88]
gi|218368683|emb|CAR16423.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli IAI39]
gi|218425825|emb|CAR06631.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli ED1a]
gi|218430777|emb|CAR11651.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli UMN026]
gi|222032194|emb|CAP74933.1| Phosphate regulon transcriptional regulatory protein [Escherichia
coli LF82]
gi|227838681|gb|EEJ49147.1| transcriptional regulator PhoB [Escherichia coli 83972]
gi|238860869|gb|ACR62867.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli BW2952]
gi|242376177|emb|CAQ30868.1| PhoB transcriptional dual regulator [Escherichia coli BL21(DE3)]
gi|253325660|gb|ACT30262.1| two component transcriptional regulator PhoB, winged helix family
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253972367|gb|ACT38038.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli B str. REL606]
gi|253976576|gb|ACT42246.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli BL21(DE3)]
gi|254590977|gb|ACT70338.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli O157:H7 str.
TW14359]
gi|257752268|dbj|BAI23770.1| DNA-binding response regulator PhoB [Escherichia coli O26:H11 str.
11368]
gi|257757744|dbj|BAI29241.1| DNA-binding response regulator PhoB [Escherichia coli O103:H2 str.
12009]
gi|257762914|dbj|BAI34409.1| DNA-binding response regulator PhoB [Escherichia coli O111:H- str.
11128]
gi|260450414|gb|ACX40836.1| two component transcriptional regulator PhoB, winged helix family
[Escherichia coli DH1]
gi|281177569|dbj|BAI53899.1| two-component response regulator [Escherichia coli SE15]
gi|284920205|emb|CBG33264.1| phosphate regulon two-component system, response regulator
[Escherichia coli 042]
gi|290761175|gb|ADD55136.1| Positive response regulator for pho regulon [Escherichia coli
O55:H7 str. CB9615]
gi|291324993|gb|EFE64408.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B088]
gi|291429369|gb|EFF02389.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli FVEC1412]
gi|291433709|gb|EFF06682.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B185]
gi|291471721|gb|EFF14204.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli B354]
gi|294490411|gb|ADE89167.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli IHE3034]
gi|298280241|gb|EFI21745.1| transcriptional regulator PhoB [Escherichia coli FVEC1302]
gi|299879979|gb|EFI88190.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 196-1]
gi|300298642|gb|EFJ55027.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 185-1]
gi|300304233|gb|EFJ58753.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 200-1]
gi|300315335|gb|EFJ65119.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 175-1]
gi|300356031|gb|EFJ71901.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 198-1]
gi|300396025|gb|EFJ79563.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 69-1]
gi|300404633|gb|EFJ88171.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 84-1]
gi|300407515|gb|EFJ91053.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 45-1]
gi|300414608|gb|EFJ97918.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 115-1]
gi|300419669|gb|EFK02980.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 182-1]
gi|300452489|gb|EFK16109.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 116-1]
gi|300458489|gb|EFK21982.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 21-1]
gi|300461769|gb|EFK25262.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 187-1]
gi|300527149|gb|EFK48218.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 119-7]
gi|300843042|gb|EFK70802.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 124-1]
gi|300843315|gb|EFK71075.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 78-1]
gi|301074542|gb|EFK89348.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 146-1]
gi|305853898|gb|EFM54337.1| transcriptional regulator PhoB [Escherichia coli NC101]
gi|306907728|gb|EFN38230.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|307552303|gb|ADN45078.1| positive response regulator for pho regulon [Escherichia coli ABU
83972]
gi|307628132|gb|ADN72436.1| transcriptional regulator PhoB [Escherichia coli UM146]
gi|308121531|gb|EFO58793.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 145-7]
gi|309700660|emb|CBI99956.1| phosphate regulon two-component system, response regulator
[Escherichia coli ETEC H10407]
gi|310337141|gb|EFQ02279.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 1827-70]
gi|312290814|gb|EFR18691.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 2362-75]
gi|312944976|gb|ADR25803.1| transcriptional regulator PhoB [Escherichia coli O83:H1 str. NRG
857C]
gi|315059676|gb|ADT74003.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Escherichia coli W]
gi|315135081|dbj|BAJ42240.1| positive response regulator for pho regulon [Escherichia coli DH1]
gi|315256222|gb|EFU36190.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 85-1]
gi|315294171|gb|EFU53522.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 153-1]
gi|315616662|gb|EFU97279.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 3431]
gi|320173784|gb|EFW48967.1| transcriptional regulator PhoB [Shigella dysenteriae CDC 74-1112]
gi|320186028|gb|EFW60773.1| transcriptional regulator PhoB [Shigella flexneri CDC 796-83]
gi|320192810|gb|EFW67450.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
EC1212]
gi|320197165|gb|EFW71782.1| transcriptional regulator PhoB [Escherichia coli WV_060327]
gi|320201640|gb|EFW76216.1| transcriptional regulator PhoB [Escherichia coli EC4100B]
gi|320638387|gb|EFX08101.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
G5101]
gi|320643767|gb|EFX12890.1| transcriptional regulator PhoB [Escherichia coli O157:H- str.
493-89]
gi|320649118|gb|EFX17696.1| transcriptional regulator PhoB [Escherichia coli O157:H- str. H
2687]
gi|320656011|gb|EFX23927.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320662568|gb|EFX29957.1| transcriptional regulator PhoB [Escherichia coli O55:H7 str. USDA
5905]
gi|320665138|gb|EFX32231.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str.
LSU-61]
gi|323152134|gb|EFZ38427.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli EPECa14]
gi|323160495|gb|EFZ46443.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E128010]
gi|323164189|gb|EFZ49996.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
sonnei 53G]
gi|323170479|gb|EFZ56129.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli LT-68]
gi|323178339|gb|EFZ63917.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli 1180]
gi|323191316|gb|EFZ76579.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli RN587/1]
gi|323379758|gb|ADX52026.1| two component transcriptional regulator PhoB, winged helix family
[Escherichia coli KO11]
gi|323938583|gb|EGB34832.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E1520]
gi|323943204|gb|EGB39360.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E482]
gi|323945298|gb|EGB41354.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H120]
gi|323952990|gb|EGB48858.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H252]
gi|323963384|gb|EGB58946.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H489]
gi|323965348|gb|EGB60806.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli M863]
gi|323972248|gb|EGB67458.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA007]
gi|323976121|gb|EGB71214.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TW10509]
gi|324010107|gb|EGB79326.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 57-2]
gi|324010710|gb|EGB79929.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 60-1]
gi|324016661|gb|EGB85880.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 117-3]
gi|324116882|gb|EGC10795.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli E1167]
gi|326341157|gb|EGD64949.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1044]
gi|326346067|gb|EGD69806.1| transcriptional regulator PhoB [Escherichia coli O157:H7 str. 1125]
gi|327254715|gb|EGE66331.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli STEC_7v]
gi|330910192|gb|EGH38702.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Escherichia coli AA86]
gi|331037711|gb|EGI09931.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H736]
gi|331045732|gb|EGI17858.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli M605]
gi|331051068|gb|EGI23120.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli M718]
gi|331060193|gb|EGI32157.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA143]
gi|331065970|gb|EGI37854.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA271]
gi|331070934|gb|EGI42293.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA280]
gi|331076122|gb|EGI47404.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H591]
gi|331080994|gb|EGI52159.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli H299]
gi|332085836|gb|EGI91000.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
dysenteriae 155-74]
gi|332094547|gb|EGI99593.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
boydii 5216-82]
gi|332098617|gb|EGJ03583.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
boydii 3594-74]
gi|332103896|gb|EGJ07242.1| transcriptional regulator PhoB [Shigella sp. D9]
gi|332341761|gb|AEE55095.1| transcriptional regulator protein PhoB [Escherichia coli UMNK88]
Length = 229
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|251794820|ref|YP_003009551.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247542446|gb|ACS99464.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 224
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R + L + GYEV+ NG A +++ L + D++MP+MDG
Sbjct: 3 KILVVDDDPNIRELVSLFLRREGYEVIEATNGEDALNRLEAVKPDLAVIDVMMPKMDGWA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E D+ ++ +T A + KPF +L+ V LL
Sbjct: 63 LCSALRESF-DMPLLMLTAKGETAHKVKGFELGADDYVVKPFDPPELIVRVKALLKR 118
>gi|218906075|ref|YP_002453909.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|218537222|gb|ACK89620.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 232
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|163940273|ref|YP_001645157.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163862470|gb|ABY43529.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 228
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|229824434|ref|ZP_04450503.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
gi|229786035|gb|EEP22149.1| hypothetical protein GCWU000282_01757 [Catonella morbi ATCC 51271]
Length = 237
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KIL+ +D+ + + L GY + +G A + L++ D+++P+
Sbjct: 1 MNHMKKILVVDDEKPISDIISFNLENEGYAIEKAYDGEQALKVFEKSQPDLVILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ R + + V+ +T + ++KPF R+L+ V L
Sbjct: 61 MDGLEVCREIRKQ-SAVPVIMLTAKDSEIDKVLGLELGADDYVTKPFSNRELIARVKANL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|229120301|ref|ZP_04249551.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228663111|gb|EEL18701.1| Two-component response regulator [Bacillus cereus 95/8201]
Length = 242
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|229193134|ref|ZP_04320089.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
gi|228590398|gb|EEK48262.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
Length = 232
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|306825161|ref|ZP_07458503.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304432597|gb|EFM35571.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 235
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKAIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|228913340|ref|ZP_04076973.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228846249|gb|EEM91268.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 225
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTTDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|257066388|ref|YP_003152644.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
gi|256798268|gb|ACV28923.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
Length = 232
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D+D +R+F+ L GY+ V +G A +E +L + DI++P M G
Sbjct: 3 NKKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKIFEKEKPALAILDIMLPGMSG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + + P ++ ++ + + KPF+ ++L+ V L+
Sbjct: 63 YEVCEKIRDESPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRV 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|261340989|ref|ZP_05968847.1| phosphate regulon transcriptional regulatory protein PhoB
[Enterobacter cancerogenus ATCC 35316]
gi|288316853|gb|EFC55791.1| phosphate regulon transcriptional regulatory protein PhoB
[Enterobacter cancerogenus ATCC 35316]
Length = 229
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPIEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHIKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|241896075|ref|ZP_04783371.1| response regulator [Weissella paramesenteroides ATCC 33313]
gi|241870675|gb|EER74426.1| response regulator [Weissella paramesenteroides ATCC 33313]
Length = 239
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ ++ L L K+G++VVS +G A D + E+ ++L DI++PE
Sbjct: 1 MT-KVLVVDDEPSLQTLLTYNLKKSGFDVVSAVDGKQALDIIHEQKIDIVLLDIMLPEES 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +T ++KPF R+++ V+ +L
Sbjct: 60 GVDVTRELRAEKNQIPIIMLTALDDEIDKVVGLEIGADDYVTKPFSPREVIARVHAVLRR 119
>gi|228940293|ref|ZP_04102864.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973209|ref|ZP_04133798.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228786405|gb|EEM34395.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819419|gb|EEM65473.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 233
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124
>gi|229029069|ref|ZP_04185168.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228732349|gb|EEL83232.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 218
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAGNGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +L+ + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 115
>gi|153814218|ref|ZP_01966886.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
gi|317500010|ref|ZP_07958245.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087760|ref|ZP_08336686.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848614|gb|EDK25532.1| hypothetical protein RUMTOR_00427 [Ruminococcus torques ATCC 27756]
gi|316898495|gb|EFV20531.1| DNA-binding response regulator VicR [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409741|gb|EGG89177.1| hypothetical protein HMPREF1025_00269 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 228
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + + + +L + G EV +G A + + + L+L D+++P++D
Sbjct: 1 MGKRILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEALEYAKACEYDLVLLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E D+ V+ +T + ++KPF++ ++ + ++
Sbjct: 61 GFQVCQQIRE-FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|119899448|ref|YP_934661.1| two-component system regulatory protein [Azoarcus sp. BH72]
gi|119671861|emb|CAL95775.1| two-component system regulatory protein [Azoarcus sp. BH72]
Length = 227
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ ED+ D+ L L GYEV +G + F L++ D+++P MD
Sbjct: 1 MNTRLLIVEDNRDILANLADYLTLKGYEVDCAQDGLTGLHLAATHHFDLIVLDVMLPGMD 60
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G L +R E D ++ +T A+ + L+KPF L +LV + +L
Sbjct: 61 GFTLCKRLREGERSDTPIIMLTARDALDDRLIGFSAGADDYLTKPFALSELVARIEAVLK 120
>gi|73661330|ref|YP_300111.1| response regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123761572|sp|Q4A160|WALR_STAS1 RecName: Full=Transcriptional regulatory protein walR
gi|72493845|dbj|BAE17166.1| response regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 233
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + +E ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFCAYDGNDAVDLIYDEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|186476911|ref|YP_001858381.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184193370|gb|ACC71335.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 241
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ +S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDASSLERRIERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|269796424|ref|YP_003315879.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269098609|gb|ACZ23045.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 239
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + ++++ +D+ ++R L +L AG+EV + +G SA VR+ L++ D+++P
Sbjct: 1 MTEPEARLVVVDDEPNIRELLATSLRFAGFEVFAAEDGMSALKLVRDTEPDLVVLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG + RR E + V+F+T ++KPF L ++V + +
Sbjct: 61 DMDGFTVTRRMREKGQHMPVLFLTARDDTQDKITGLTVGGDDYVTKPFSLEEVVARIRAV 120
Query: 118 LTIKN 122
L +
Sbjct: 121 LRRTH 125
>gi|229828450|ref|ZP_04454519.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
14600]
gi|229793044|gb|EEP29158.1| hypothetical protein GCWU000342_00511 [Shuttleworthia satelles DSM
14600]
Length = 229
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + +V +G A DK RE + L+L D+++P MD
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDEMKVDCAYDGQEALDKAREGDYDLILLDVMLPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R E ++ ++ +T ++KPF++ ++ + +L
Sbjct: 61 GFEVCRAVRE-FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAILRR 119
>gi|229105491|ref|ZP_04236132.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
gi|228677916|gb|EEL32152.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
Length = 232
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLKKEGYHVVKAADGEEAVHIIKTQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKY-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|71737172|ref|YP_273446.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557725|gb|AAZ36936.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 245
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|332881804|ref|ZP_08449452.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332680443|gb|EGJ53392.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 1341
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ + + K L Y V++ NG A +++ L+++D++MP MDG L
Sbjct: 1094 ILLVDDNMQLLEMMEKILATK-YRVLTAENGLEALKQLKAHAVDLIVSDVMMPGMDGFAL 1152
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ + V+ +T + D L+KPF L+ L ++ LL
Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLLR 1209
>gi|309792798|ref|ZP_07687241.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308225162|gb|EFO78947.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 238
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ M F+ L G V + NG A D+ R++ ++L D++MP MDG E
Sbjct: 9 VLVVDDEPRMINFMRLNLELEGMRVATAANGREALDRARDDMPDVILLDVMMPVMDGFEA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + ++ +T + KPF R+L++ + +L
Sbjct: 69 LRRLRQ-FSQVPILMLTAKDEEEDRVRGLELGADDYIGKPFSHRELISRIRAVLRR 123
>gi|313620820|gb|EFR92044.1| transcriptional regulatory protein WalR [Listeria innocua FSL
S4-378]
Length = 199
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|28209958|ref|NP_780902.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28202393|gb|AAO34839.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 246
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L AG++ C++G + E L+L DI++P MDGI+
Sbjct: 25 KILIVDDDQNICEVIKMYLESAGFDTRVCHDGKESQSIFIEYNPDLVLLDIMLPSMDGID 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + KPF ++L+ V +L
Sbjct: 85 VLKWIRKEH-ETPVIMLTAKGETFDKVLGLELGADDYMVKPFEPKELLARVKAVLRR 140
>gi|109896556|ref|YP_659811.1| osmolarity response regulator [Pseudoalteromonas atlantica T6c]
gi|332304523|ref|YP_004432374.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|109698837|gb|ABG38757.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
gi|332171852|gb|AEE21106.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 240
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V + N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRAAANAEQMDRMLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ ++ +T L KPF+ R+L+ V +L K
Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARVKAVLRRK 124
>gi|330938965|gb|EGH42452.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330975743|gb|EGH75809.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 245
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|313617011|gb|EFR89609.1| heme response regulator HssR [Listeria innocua FSL S4-378]
Length = 225
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFHVLEASDGLEGEKMVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|313902699|ref|ZP_07836097.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
gi|313466996|gb|EFR62512.1| two component transcriptional regulator, winged helix family
[Thermaerobacter subterraneus DSM 13965]
Length = 235
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ MR L L + G+ V +G A ++VR E L+L DI++P +DG
Sbjct: 2 RILVVDDEAPMRALLRLFLEQHGFAVSEAEDGYEALERVRTERPDLVLLDIMLPGIDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ +T V L KPF +L+ + +L
Sbjct: 62 VCRILRRE-SDVPLIMLTARDDVRDRVSGLEAGADDYLVKPFAEEELLARIRAVLRR 117
>gi|298244230|ref|ZP_06968036.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297551711|gb|EFH85576.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 234
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +D+ + L ++L GY+V S +NG A + R +++ DI++P M+G
Sbjct: 8 NAHILIVDDETRVTSALRRSLAYEGYQVSSASNGEIALELARTRRPDVVILDIMLPGMNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ R + ++ +T VA L KPF L +L+ V LL K
Sbjct: 68 LEVCRCLHQTQATPAILMLTARDTVADRVTGLEMGADDYLVKPFALEELLARVKALLRRK 127
>gi|228956708|ref|ZP_04118495.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802973|gb|EEM49804.1| hypothetical protein bthur0005_2480 [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 238
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYTVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|228957071|ref|ZP_04118843.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802604|gb|EEM49449.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 225
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|30260805|ref|NP_843182.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47525930|ref|YP_017279.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183643|ref|YP_026895.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|165872685|ref|ZP_02217314.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167635188|ref|ZP_02393504.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640906|ref|ZP_02399164.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170689014|ref|ZP_02880214.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170708465|ref|ZP_02898907.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177652822|ref|ZP_02935195.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190568540|ref|ZP_03021446.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227816479|ref|YP_002816488.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229601364|ref|YP_002865249.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254684272|ref|ZP_05148132.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254722076|ref|ZP_05183865.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254738737|ref|ZP_05196440.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254742051|ref|ZP_05199738.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254754962|ref|ZP_05206996.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254762307|ref|ZP_05214151.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30254254|gb|AAP24668.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47501078|gb|AAT29754.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177570|gb|AAT52946.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164711546|gb|EDR17094.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511126|gb|EDR86514.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167529447|gb|EDR92198.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170126586|gb|EDS95471.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170666999|gb|EDT17762.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172081856|gb|EDT66925.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190560334|gb|EDV14313.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227006857|gb|ACP16600.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229265772|gb|ACQ47409.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 225
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|255308636|ref|ZP_05352807.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 230
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD
Sbjct: 1 MNNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+
Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119
>gi|167585829|ref|ZP_02378217.1| two component transcriptional regulator, winged helix family
protein [Burkholderia ubonensis Bu]
Length = 241
Score = 156 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|167759417|ref|ZP_02431544.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
gi|167662974|gb|EDS07104.1| hypothetical protein CLOSCI_01764 [Clostridium scindens ATCC 35704]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +D+ + + + +L + G EV +G A +E + ++L DI++P+ D
Sbjct: 1 MSRRVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALKLAKENAYDMILLDIMLPKHD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQQIRE-FSDVPIVMLTARGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|167624972|ref|YP_001675266.1| two component transcriptional regulator [Shewanella halifaxensis
HAW-EB4]
gi|167354994|gb|ABZ77607.1| two component transcriptional regulator, winged helix family
[Shewanella halifaxensis HAW-EB4]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + G+ + + SA + E L+L D + P +
Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFTTAAAEDYDSALAMLTEPYPDLVLLDWMFPGGN 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + ++
Sbjct: 61 GIQLAKRLRQDEFTRHIPIIMLTARGEEEDKVRGLEVGADDFMTKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|333010839|gb|EGK30265.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri K-272]
gi|333021338|gb|EGK40591.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri K-227]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|296111034|ref|YP_003621415.1| response regulator [Leuconostoc kimchii IMSNU 11154]
gi|295832565|gb|ADG40446.1| response regulator [Leuconostoc kimchii IMSNU 11154]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GYEV++ +G A EE L+L D ++PE+D
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYEVITAADGQEALTIFNEEKPDLVLLDQMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + V+ +T + ++KPF R+LV V L
Sbjct: 60 GVEVLRQIRSK-SETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|330718004|ref|ZP_08312604.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
Length = 235
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+V++ +G A +E L+L D ++PE+D
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYDVITAADGKEALSLYSDESPDLVLLDQMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ D D V+ +T + ++KPF R+LV V L
Sbjct: 60 GIEVLRQIRSND-DTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|269219051|ref|ZP_06162905.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
F0332]
gi|269212162|gb|EEZ78502.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str.
F0332]
Length = 227
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + L L G+EV C G +A R + L+L D+++P +D
Sbjct: 1 MSTRILVVDDDPSIAEMLALLLESEGFEVSVCATGNNALPLFRADRPDLVLLDVMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E D+ ++ ++ ++KPF L+ V L
Sbjct: 61 GVSVCRLIREE-SDVPIIMMSARTDSVDVIAGLEAGADDYVTKPFENSVLLARVKARLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|227513674|ref|ZP_03943723.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227083085|gb|EEI18397.1| response regulator [Lactobacillus buchneri ATCC 11577]
Length = 242
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L +A ++V + NGA A + + ++L D+++PEM G
Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R D V+ +T + KPF R+++ +N +L
Sbjct: 62 EVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRR 119
>gi|172061354|ref|YP_001809006.1| two component transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|171993871|gb|ACB64790.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MC40-6]
Length = 241
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|37527767|ref|NP_931112.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|36787203|emb|CAE16283.1| phosphate regulon transcriptional regulatory protein [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L K GY+ V + SA + E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ ++ + D+ VM +T ++KPF ++LV V +L
Sbjct: 61 GLQIIKQMKRNNNIRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323490448|ref|ZP_08095655.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Planococcus donghaensis MPA1U2]
gi|323395852|gb|EGA88691.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Planococcus donghaensis MPA1U2]
Length = 235
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + L L +AG+E + N+G Y+ E SL++ D+++P MD
Sbjct: 1 MLKKILIIEDEHSIATLLSYNLVQAGFETMIANDGKQGYELALSEKPSLIVLDLMLPSMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + ++ +T ++KPF R++V + +L
Sbjct: 61 GVEVCKSLRQQKVNTPIIMLTAKGDEFDKVLGLELGADDYMTKPFSPREVVARIKAVLRR 120
>gi|297545597|ref|YP_003677899.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296843372|gb|ADH61888.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 231
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ + + L K GY +G A +E+ L++ D+++P++D
Sbjct: 1 MTHRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFSVLRTLRQSM-TIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRR 119
>gi|229048564|ref|ZP_04194124.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH676]
gi|229112318|ref|ZP_04241857.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-15]
gi|228671158|gb|EEL26463.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-15]
gi|228722766|gb|EEL74151.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH676]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|251799985|ref|YP_003014716.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247547611|gb|ACT04630.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 238
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+AEDD D+ + LGK GY+++ +G A V+ L++ DI+MP M
Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R E + ++F++ + ++KPF+ +L+ VN L
Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|30022918|ref|NP_834549.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
gi|229130133|ref|ZP_04259094.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-Cer4]
gi|229147425|ref|ZP_04275774.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST24]
gi|296505317|ref|YP_003667017.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
gi|29898477|gb|AAP11750.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
gi|228636107|gb|EEK92588.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST24]
gi|228653348|gb|EEL09225.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-Cer4]
gi|296326369|gb|ADH09297.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|296101518|ref|YP_003611664.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055977|gb|ADF60715.1| transcriptional regulator PhoB [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|255037318|ref|YP_003087939.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254950074|gb|ACT94774.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL EDD ++ L + YEVV +GA A D +E F + + DI++P MD
Sbjct: 1 MKKRILYVEDDPNLAFATKDNLEQYDYEVVHATDGAEALDFFGKEHFDICVLDIMLPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA + D + ++F++ + ++KPF + +L ++ L
Sbjct: 61 GFTLAEKIRASDSQVPILFLSARSMQDDKIKGLKLGADDYITKPFSIEELKLRIDVFLRR 120
>gi|16801789|ref|NP_472057.1| hypothetical protein lin2728 [Listeria innocua Clip11262]
gi|16415264|emb|CAC97954.1| lin2728 [Listeria innocua Clip11262]
gi|313622297|gb|EFR92796.1| heme response regulator HssR [Listeria innocua FSL J1-023]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEGEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCKKLRISYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|330950929|gb|EGH51189.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae Cit 7]
Length = 245
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|306829564|ref|ZP_07462754.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
gi|304428650|gb|EFM31740.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249]
Length = 252
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 19 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 79 EVAKAIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135
>gi|302186956|ref|ZP_07263629.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae 642]
Length = 245
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|269791708|ref|YP_003316612.1| two component transcriptional regulator, winged helix family
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099343|gb|ACZ18330.1| two component transcriptional regulator, winged helix family
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ +R L +A + GY V+ +G A D L++ D+++P+MD
Sbjct: 1 MRWRILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR E + V+ +T + KPF + +L+ V L
Sbjct: 61 GWEVCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFSIPELMARVRAHL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|218231580|ref|YP_002369664.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|229153061|ref|ZP_04281242.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1550]
gi|218159537|gb|ACK59529.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228630481|gb|EEK87129.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1550]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAVHIIETQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRTKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|326804031|ref|YP_004321849.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
gi|326650605|gb|AEA00788.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
Length = 235
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+ ++ +G A + L++ D+++P+ DG+
Sbjct: 2 KKILVVDDEKPISDIITFNLQKEGYDTLAAFDGEEALESFASYQPDLIVLDLMLPKKDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + ++ +T ++KPF R+L + L
Sbjct: 62 EVCREIRK-TSSVPIIMLTAKGEEIDKVLGLEMGADDYVTKPFSNRELSARIKANLRR 118
>gi|289551851|ref|YP_003472755.1| Two-component response regulator SA14-24 [Staphylococcus
lugdunensis HKU09-01]
gi|289181382|gb|ADC88627.1| Two-component response regulator SA14-24 [Staphylococcus
lugdunensis HKU09-01]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|228907029|ref|ZP_04070894.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228852620|gb|EEM97409.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 218
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE +G A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAEDGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|229003269|ref|ZP_04161100.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
gi|228757987|gb|EEM07201.1| hypothetical protein bmyco0002_2490 [Bacillus mycoides Rock1-4]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L K L + Y V NG A + ++L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + ++V + L+
Sbjct: 65 VCRRLRNKT-NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120
>gi|312797029|ref|YP_004029951.1| transcriptional regulatory protein ompR [Burkholderia rhizoxinica
HKI 454]
gi|312168804|emb|CBW75807.1| Transcriptional regulatory protein ompR [Burkholderia rhizoxinica
HKI 454]
Length = 240
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MATQILVIDDDQELRDLLRDYLTRQGIEVSVLHDAASLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|302036228|ref|YP_003796550.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Candidatus Nitrospira defluvii]
gi|300604292|emb|CBK40624.1| putative Phosphate regulon transcriptional regulatory protein phoB
[Candidatus Nitrospira defluvii]
Length = 238
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ D+ + + L K G+ VS G +V+ E L++ D+++PE+DG+
Sbjct: 9 KKILIVEDEKDILQLVKLYLEKEGFRTVSAMTGTEGLRQVKAEHPDLIILDLMLPELDGL 68
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + L ++ +T A + ++KPF + LV V LL
Sbjct: 69 EVCKRIRLNQETALLPILMLTAKAEESDTVIGLELGADDYVTKPFSPKALVARVKALLRR 128
>gi|290560102|pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|42779797|ref|NP_977044.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42735714|gb|AAS39652.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIKAVLRRTN 120
>gi|15840172|ref|NP_335209.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|215444890|ref|ZP_03431642.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis T85]
gi|218752415|ref|ZP_03531211.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis GM 1503]
gi|260185650|ref|ZP_05763124.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis CPHL_A]
gi|306966786|ref|ZP_07479447.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu009]
gi|308379861|ref|ZP_07487881.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu011]
gi|13880325|gb|AAK45023.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|308355483|gb|EFP44334.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu009]
gi|308363343|gb|EFP52194.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu011]
Length = 240
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|326940933|gb|AEA16829.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKDFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|229068336|ref|ZP_04201639.1| Two-component response regulator [Bacillus cereus F65185]
gi|229177176|ref|ZP_04304565.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228606357|gb|EEK63789.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228714797|gb|EEL66669.1| Two-component response regulator [Bacillus cereus F65185]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|226939099|ref|YP_002794170.1| PhoB [Laribacter hongkongensis HLHK9]
gi|226714023|gb|ACO73161.1| PhoB [Laribacter hongkongensis HLHK9]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + L ++G++V+ + +A V+ L+L D ++P
Sbjct: 1 MPATILLVEDEPAIQELIAFNLAQSGHQVLRAASAEAAQTLVKNALPDLVLLDWMLPGQS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE ARR E ++ ++ +T + ++KPF R+L + +L
Sbjct: 61 GIEFARRLRSDERTREVPIIMLTARSDEQDKIAGLETGADDYITKPFSPRELQARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|309790461|ref|ZP_07685022.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308227509|gb|EFO81176.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 226
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD+ +R + L GY V+ +G + VR++ L++ D++MPEMDG+
Sbjct: 4 RTILVVDDDNGLRELIRINLEHEGYTVIQAADGLQCLELVRDQRPDLVILDVMMPEMDGV 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + E L V+ +T L KPF++ +L + LL
Sbjct: 64 EACTKLRE-FSLLPVLMLTAKVQSEDVIQGLDCGADDYLLKPFNMNELSARIRALLRR 120
>gi|302869659|ref|YP_003838296.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315503859|ref|YP_004082746.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|302572518|gb|ADL48720.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315410478|gb|ADU08595.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++ L +L AG++V + +G++A + ++ L++ D+++P++DG E
Sbjct: 13 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAAKDHRPDLVVLDVMLPDLDGFE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+F+T A ++KPF L +L + +L
Sbjct: 73 VIRMLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 129
>gi|152975977|ref|YP_001375494.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024729|gb|ABS22499.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|300818279|ref|ZP_07098490.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 107-1]
gi|300529170|gb|EFK50232.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 107-1]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|239616953|ref|YP_002940275.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
gi|239505784|gb|ACR79271.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED++ + F+ K L + GY V + +NG A +K+ + + L++ DI++P DG++
Sbjct: 2 RILLVEDEEAITEFVKKGLSEEGYIVDTVDNGEDALNKIFDVDYDLIILDIMLPVKDGLK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E ++ +T + L KPF +L+ + +L
Sbjct: 62 VCREVRENGISTPILMLTALDSTEDKVTGLNAGADDYLVKPFSFSELLARIRAILRR 118
>gi|78778522|ref|YP_396634.1| two component transcriptional regulator [Prochlorococcus marinus
str. MIT 9312]
gi|78712021|gb|ABB49198.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. MIT 9312]
Length = 248
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ ++G A ++ L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRK-DSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|228920111|ref|ZP_04083460.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228839567|gb|EEM84859.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 218
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 115
>gi|228992299|ref|ZP_04152230.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228998353|ref|ZP_04157945.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229005836|ref|ZP_04163531.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228755416|gb|EEM04766.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228761398|gb|EEM10352.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|228767324|gb|EEM15956.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKQALELFAEHTIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|225853711|ref|YP_002735223.1| response regulator SaeR [Streptococcus pneumoniae JJA]
gi|225724034|gb|ACO19887.1| response regulator SaeR [Streptococcus pneumoniae JJA]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|123967688|ref|YP_001008546.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
gi|123197798|gb|ABM69439.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
Length = 248
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ ++G A ++ L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRK-DSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|225862629|ref|YP_002748007.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|225787490|gb|ACO27707.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|154250855|ref|YP_001411679.1| two component transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154154805|gb|ABS62022.1| two component transcriptional regulator, winged helix family
[Parvibaculum lavamentivorans DS-1]
Length = 272
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++ ED++ + L L K GY+V++ +G A +RE L+L D ++P +
Sbjct: 42 MKPSVMIVEDEEALLTLLQYNLDKEGYKVITAADGEEADLLIRETTPDLILLDWMLPGLS 101
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR ++ ++ IT ++KPF + +L+ + ++
Sbjct: 102 GIELCRRLRGRPETRNVPIIMITARGEETDRIRGLDIGADDYVTKPFSMTELLARIRAVM 161
Query: 119 TI 120
Sbjct: 162 RR 163
>gi|11465824|ref|NP_053968.1| Ycf27 [Porphyra purpurea]
gi|1723330|sp|P51358|YCF27_PORPU RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|1276824|gb|AAC08244.1| hypothetical chloroplast ORF 27 [Porphyra purpurea]
Length = 243
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +RR L L GYEV++ +NG A R+E SL++ D++MP++DG
Sbjct: 5 KEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T V + KPF ++L + +L
Sbjct: 65 YGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRR 122
>gi|306833967|ref|ZP_07467091.1| response regulator [Streptococcus bovis ATCC 700338]
gi|304423968|gb|EFM27110.1| response regulator [Streptococcus bovis ATCC 700338]
Length = 236
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYE V+ +G A K EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLAKEGYETVTAFDGREAITKFEEENPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|229093969|ref|ZP_04225060.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-42]
gi|228689451|gb|EEL43265.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-42]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|159898864|ref|YP_001545111.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891903|gb|ABX04983.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 243
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + F+ L G V+S NG A +KVRE+ +L DI+MP +DG E
Sbjct: 13 ILVVDDEPRLVTFMRVNLEAEGCRVISAENGRKALEKVREDMPDAVLLDIMMPGLDGYET 72
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E + V+F+T + KPF R+LV+ + +L
Sbjct: 73 LRRLRE-FSSIPVIFLTAKDEEDDRIRGLELGADDYIGKPFSHRELVSRLRAVLRR 127
>gi|33864259|ref|NP_895819.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
gi|33641039|emb|CAE22168.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
Length = 248
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY+V + +G A D L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYQVFTACDGNEALDIFHNCEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|300868157|ref|ZP_07112789.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
gi|300333781|emb|CBN57969.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +D+ D + L L GY+V ++G A P L+++D++MP MDG
Sbjct: 2 QKILVVDDELDCQAVLAIYLESRGYQVECASSGLEALSIFESNPPDLVISDVMMPHMDGF 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR L + +F++G + + ++ L KPF ++++ +V L
Sbjct: 62 EFCRRLRSSRLGQLVPFIFLSGQGELESKVEGHSIGGDDYLVKPFQPKEILAKVKGQLER 121
Query: 121 KN 122
+
Sbjct: 122 SH 123
>gi|269836402|ref|YP_003318630.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269785665|gb|ACZ37808.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +R + L KAG++V + +G +A + +P L++ DI++P +DG +
Sbjct: 3 RILVVEDEASIRTTIAYNLKKAGHDVRTVADGEAAIAQANADPPDLVILDIMLPTIDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T ++KPF +R+L+ V LL +
Sbjct: 63 VCRHIR-RSSSVPILMLTARDDEVDRVVGLEIGADDYVTKPFSMRELMARVKALLRRR 119
>gi|148381290|ref|YP_001255831.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|148290774|emb|CAL84908.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
Length = 230
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + FL L K GY+V NG A DK+R E F+L+L DI+MP++D
Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R L ++ ++F+T + ++KPF L +L V+ +L
Sbjct: 61 GFEAIKRIRRLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119
>gi|332654085|ref|ZP_08419829.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
gi|332517171|gb|EGJ46776.1| DNA-binding response regulator VicR [Ruminococcaceae bacterium D16]
Length = 240
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + + L GY+V + +G A + RE F L++ D++MP++DG++
Sbjct: 10 KILVVDDERVLVKGITFNLKNEGYQVETGYDGEEAVELAREGKFDLIILDLMMPKIDGLQ 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E ++ ++ +T + ++KPF++ +L V LL
Sbjct: 70 ACMRIRE-FSNVPIIMLTARSEDTDKIIGFECGADDYITKPFNILELKARVRALLRR 125
>gi|308397855|ref|ZP_07492623.2| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu012]
gi|308366785|gb|EFP55636.1| mycobacterial persistence regulator mprA [Mycobacterium
tuberculosis SUMu012]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++G A D + + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASDRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DL ++ +T +V+ L KPF L +L+ + LL
Sbjct: 62 VCRQLRGTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFALEELLARMRALLRR 118
>gi|154486694|ref|ZP_02028101.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
L2-32]
gi|154084557|gb|EDN83602.1| hypothetical protein BIFADO_00515 [Bifidobacterium adolescentis
L2-32]
Length = 234
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARIRAVLRR 118
>gi|228990586|ref|ZP_04150551.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
DSM 12442]
gi|228769112|gb|EEM17710.1| Transcriptional regulatory protein srrA [Bacillus pseudomycoides
DSM 12442]
Length = 247
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A +K + + L+L DI+MP DGIE
Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + + KPF R++V V +L
Sbjct: 75 VCKGIREK-KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130
>gi|227496351|ref|ZP_03926642.1| response regulator [Actinomyces urogenitalis DSM 15434]
gi|226834127|gb|EEH66510.1| response regulator [Actinomyces urogenitalis DSM 15434]
Length = 248
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EVV+ +G A V +E L++ D+++P+MDG
Sbjct: 15 RLLVVDDEPNIRDLLASSLRFAGFEVVTAADGNGALRAVDQEEPDLVVLDVMLPDMDGFT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ARR E D ++F+T ++ ++KPF L ++V + +L +
Sbjct: 75 VARRLRERDVTTPILFLTARDDMSDKVQGLTVGGDDYVTKPFGLEEVVARIRAILRRTH 133
>gi|56962949|ref|YP_174676.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56909188|dbj|BAD63715.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D++++ L L K GY V +G A V +P LL+ DI+MP+MDG E+
Sbjct: 6 ILIADDEEEIADLLAIHLEKEGYSVAKAADGQEAIHIVETQPIDLLILDIMMPKMDGYEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E ++ ++F++ + ++KPF +LV VN L
Sbjct: 66 TRRIRETH-NMPIIFLSAKTSDFDKVHGLVIGADDYITKPFTPIELVARVNAQLRR 120
>gi|220931316|ref|YP_002508224.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
gi|219992626|gb|ACL69229.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++R L L + GY V + +G +A +V + ++L++ DI++P+ DG+E
Sbjct: 6 RILVVDDEQEIRELLKSYLEREGYVVDTVKDGKTALFRVSNQDYNLVILDIMLPDTDGVE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E+ ++ ++ +T + ++KPF +L+ V L
Sbjct: 66 VCRTIREIT-NIPIIMLTARDSEVDKVLGLRIGADDYITKPFLPGELIARVKAQLRR 121
>gi|320353323|ref|YP_004194662.1| winged helix family two component transcriptional regulator
[Desulfobulbus propionicus DSM 2032]
gi|320121825|gb|ADW17371.1| two component transcriptional regulator, winged helix family
[Desulfobulbus propionicus DSM 2032]
Length = 226
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R + +L + Y V + +GA A +KV +PF L++ D+++PE DG
Sbjct: 2 RVLIVDDEPELREQIALSLRQQQYTVDTAGDGALALEKVFADPFDLIVLDLMLPEKDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R V+ +T V L KPF + +L+ + LL +
Sbjct: 62 VLRELRAEGVKTPVLMLTAKGEVDSRVKGLDLGADDYLHKPFSMAELLARIRALLRRSH 120
>gi|65318077|ref|ZP_00391036.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|228901720|ref|ZP_04065892.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228857852|gb|EEN02340.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|229158472|ref|ZP_04286533.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 4342]
gi|228624991|gb|EEK81757.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 4342]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY V+ +G A + +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVLKAADGEEAIHIIETQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|168483613|ref|ZP_02708565.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
gi|172042917|gb|EDT50963.1| response regulator SaeR [Streptococcus pneumoniae CDC1873-00]
gi|332205113|gb|EGJ19176.1| response regulator [Streptococcus pneumoniae GA47368]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLNLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|167630854|ref|YP_001681353.1| two-component response regulator resd [Heliobacterium modesticaldum
Ice1]
gi|167593594|gb|ABZ85342.1| two-component response regulator resd [Heliobacterium modesticaldum
Ice1]
Length = 240
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ +LL ED++ +RR L L + + VV A + +R+ L++ D++MP
Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG R+ E ++ ++F+T + + KPF R+LV V LL
Sbjct: 61 LDGWTTCRKIRE-FSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALL 119
Query: 119 TIKN 122
++
Sbjct: 120 RRRS 123
>gi|15900027|ref|NP_344631.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
gi|111656923|ref|ZP_01407745.1| hypothetical protein SpneT_02001832 [Streptococcus pneumoniae
TIGR4]
gi|116516719|ref|YP_815548.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
gi|148985429|ref|ZP_01818634.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
gi|148987813|ref|ZP_01819276.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
gi|148993923|ref|ZP_01823306.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
gi|148996490|ref|ZP_01824208.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
gi|149001833|ref|ZP_01826806.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
gi|149007940|ref|ZP_01831518.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
gi|149017756|ref|ZP_01834215.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
gi|168486666|ref|ZP_02711174.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
gi|168489445|ref|ZP_02713644.1| response regulator SaeR [Streptococcus pneumoniae SP195]
gi|168492607|ref|ZP_02716750.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
gi|168493781|ref|ZP_02717924.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
gi|168577082|ref|ZP_02722911.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
gi|169834091|ref|YP_001693605.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
gi|182683051|ref|YP_001834798.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
gi|194397353|ref|YP_002036799.1| response regulator [Streptococcus pneumoniae G54]
gi|221231023|ref|YP_002510175.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
gi|225855866|ref|YP_002737377.1| response regulator SaeR [Streptococcus pneumoniae P1031]
gi|225860118|ref|YP_002741627.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
gi|237649600|ref|ZP_04523852.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974]
gi|237821536|ref|ZP_04597381.1| response regulator SaeR [Streptococcus pneumoniae CCRI 1974M2]
gi|298230008|ref|ZP_06963689.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298254523|ref|ZP_06978109.1| response regulator SaeR [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298501871|ref|YP_003723811.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
gi|303254821|ref|ZP_07340921.1| response regulator protein [Streptococcus pneumoniae BS455]
gi|303259126|ref|ZP_07345104.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
gi|303260883|ref|ZP_07346832.1| DNA-binding response regulator [Streptococcus pneumoniae
SP14-BS292]
gi|303263210|ref|ZP_07349133.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
gi|303267317|ref|ZP_07353178.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
gi|303269588|ref|ZP_07355349.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
gi|307066757|ref|YP_003875723.1| CheY-like receiver/winged-helix DNA-binding domain-containing
response regulator [Streptococcus pneumoniae AP200]
gi|307126308|ref|YP_003878339.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
gi|5830538|emb|CAB54578.1| response regulator [Streptococcus pneumoniae]
gi|14971549|gb|AAK74271.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4]
gi|116077295|gb|ABJ55015.1| DNA-binding response regulator [Streptococcus pneumoniae D39]
gi|147757065|gb|EDK64104.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70]
gi|147760291|gb|EDK67280.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69]
gi|147760563|gb|EDK67538.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74]
gi|147922387|gb|EDK73507.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71]
gi|147926277|gb|EDK77350.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73]
gi|147927630|gb|EDK78656.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68]
gi|147931320|gb|EDK82298.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72]
gi|168996593|gb|ACA37205.1| response regulator SaeR [Streptococcus pneumoniae Hungary19A-6]
gi|182628385|gb|ACB89333.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14]
gi|183570301|gb|EDT90829.1| response regulator SaeR [Streptococcus pneumoniae CDC1087-00]
gi|183572088|gb|EDT92616.1| response regulator SaeR [Streptococcus pneumoniae SP195]
gi|183573247|gb|EDT93775.1| response regulator SaeR [Streptococcus pneumoniae CDC0288-04]
gi|183576175|gb|EDT96703.1| response regulator SaeR [Streptococcus pneumoniae CDC3059-06]
gi|183577322|gb|EDT97850.1| response regulator SaeR [Streptococcus pneumoniae MLV-016]
gi|194357020|gb|ACF55468.1| response regulator TCS08 [Streptococcus pneumoniae G54]
gi|220673483|emb|CAR67954.1| response regulator protein [Streptococcus pneumoniae ATCC 700669]
gi|225725157|gb|ACO21009.1| response regulator SaeR [Streptococcus pneumoniae P1031]
gi|225727262|gb|ACO23113.1| response regulator SaeR [Streptococcus pneumoniae Taiwan19F-14]
gi|298237466|gb|ADI68597.1| response regulator [Streptococcus pneumoniae TCH8431/19A]
gi|301793386|emb|CBW35751.1| response regulator protein [Streptococcus pneumoniae INV104]
gi|301799255|emb|CBW31775.1| response regulator protein [Streptococcus pneumoniae OXC141]
gi|301801044|emb|CBW33711.1| response regulator protein [Streptococcus pneumoniae INV200]
gi|302598258|gb|EFL65304.1| response regulator protein [Streptococcus pneumoniae BS455]
gi|302637720|gb|EFL68206.1| DNA-binding response regulator [Streptococcus pneumoniae
SP14-BS292]
gi|302639544|gb|EFL70001.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293]
gi|302640862|gb|EFL71248.1| DNA-binding response regulator [Streptococcus pneumoniae BS458]
gi|302643168|gb|EFL73454.1| DNA-binding response regulator [Streptococcus pneumoniae BS457]
gi|302646983|gb|EFL77207.1| DNA-binding response regulator [Streptococcus pneumoniae BS397]
gi|306408294|gb|ADM83721.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Streptococcus
pneumoniae AP200]
gi|306483370|gb|ADM90239.1| response regulator SaeR [Streptococcus pneumoniae 670-6B]
gi|327390491|gb|EGE88831.1| response regulator [Streptococcus pneumoniae GA04375]
gi|332075745|gb|EGI86212.1| response regulator [Streptococcus pneumoniae GA17570]
gi|332076537|gb|EGI86999.1| response regulator [Streptococcus pneumoniae GA17545]
gi|332077390|gb|EGI87851.1| response regulator [Streptococcus pneumoniae GA41301]
gi|332202007|gb|EGJ16076.1| response regulator [Streptococcus pneumoniae GA41317]
gi|332204102|gb|EGJ18167.1| response regulator [Streptococcus pneumoniae GA47901]
Length = 232
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|228951142|ref|ZP_04113258.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228808552|gb|EEM55055.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|254220896|pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
gi|254220897|pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + L L K GYEV ++G A + V E L+L DI++P D
Sbjct: 1 MDKKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GVEVCREVRKKY-DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|209966526|ref|YP_002299441.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodospirillum centenum SW]
gi|209959992|gb|ACJ00629.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodospirillum centenum SW]
Length = 234
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ L L K G+ V+S ++G A E+ L+L D ++P M G+E+
Sbjct: 9 ILIVEDEADLVTLLKYNLEKEGFRVISASDGEEALLLANEQAPHLVLLDWMLPLMSGLEV 68
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T A ++KPF +LV + +L
Sbjct: 69 CRQLRRNPKTRDTPVIMLTARGEEADKVRGLNSGADDYIAKPFSPTELVARMRAVLRR 126
>gi|156741162|ref|YP_001431291.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156232490|gb|ABU57273.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ +R L +AG+ V+ ++G + R E L++ D+ +P MD
Sbjct: 1 MNATILIIEDEASIRTVARAYLEQAGFRVLLADSGPEGVELARHECPDLVILDLNLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+A R + D D+ ++ +T + + + KPF R+LV V +L
Sbjct: 61 GMEVAARLRQ-DSDVFIVMLTARSEESDRVAGLRIGADDYVIKPFSPRELVARVEAILRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|322411348|gb|EFY02256.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 236
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY++V+ +G A +E L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYDIVTAFDGREAVTVFEDEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|300853968|ref|YP_003778952.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300434083|gb|ADK13850.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 236
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++++ EDD+ + L + L K GYEV ++G + + F+L++ DI++PEMD
Sbjct: 1 MGERLMIVEDDEAIANILKEHLEKEGYEVNWASSGKEGLEDFKTYEFALVMIDIMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + ++ D+ V+ I+ ++KPF L ++ + L
Sbjct: 61 GFTLCKNIRWINEDIPVVIISAKQTEMDKVKGLKLGADDYITKPFSLIEVSARIEAHLRR 120
>gi|256752368|ref|ZP_05493229.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|256748779|gb|EEU61822.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
Length = 231
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + L + G+ V++ NG + D ++E L++ D+++P +
Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRLRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|149912107|ref|ZP_01900695.1| putative DNA-binding response regulator [Moritella sp. PE36]
gi|149804813|gb|EDM64853.1| putative DNA-binding response regulator [Moritella sp. PE36]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +DD +++ L + L +AG+ V++ G + L++ D++MP DG
Sbjct: 4 KKQILVVDDDVEIKELLSEYLDQAGFSVLTAGEGKEMQRVLATNTPDLIVLDVMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ + ++ +T + A ++KPF R+L+ + LL
Sbjct: 64 FTLCQKIR-RTSQVPIIMLTANSDEADRIVGLEIGADDYMAKPFSPRELLARIKALLRRS 122
Query: 122 N 122
+
Sbjct: 123 S 123
>gi|4481749|gb|AAD21216.2| BacR [Bacillus licheniformis]
Length = 238
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++ +A+D+ ++R L L + YEV +G A + + L++ D++MP++DGIE
Sbjct: 5 RVFIADDEKEIRDLLKTYLKRECYEVDVAVDGEDALRLFEQNHYHLVILDVMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + +++ + +L
Sbjct: 65 VCRRMRNHT-NVPILMLTAKDLEGDKILGLSIGADDYITKPFSVNEVLARIKAMLRR 120
>gi|228995640|ref|ZP_04155304.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
gi|228764114|gb|EEM12997.1| hypothetical protein bmyco0003_2410 [Bacillus mycoides Rock3-17]
Length = 237
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L K L + Y V NG A + ++L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + ++V + L+
Sbjct: 65 VCRRLRNKT-NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120
>gi|327395749|dbj|BAK13171.1| transcriptional regulatory protein CpxR [Pantoea ananatis AJ13355]
Length = 249
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EVV ++G A + + + LLL D++MP+ +
Sbjct: 18 MN-KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKN 75
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 76 GIDTLKELRQQY-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 134
Query: 121 KN 122
N
Sbjct: 135 SN 136
>gi|289678167|ref|ZP_06499057.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae FF5]
Length = 195
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|295706459|ref|YP_003599534.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
gi|294804118|gb|ADF41184.1| two-component response regulator ResD [Bacillus megaterium DSM 319]
Length = 238
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++LL +D+D +RR L L K GY + +G A +K + L++ D++MP +DGI
Sbjct: 5 QRLLLVDDEDRIRRLLKMYLEKEGYIIEEAADGHEAIEKALHIDYDLIVLDLMMPGIDGI 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E ++ E ++ +T + KPF R++V V LL +
Sbjct: 65 EACKQIREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRRSS 123
>gi|228912002|ref|ZP_04075727.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228847657|gb|EEM92586.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 228
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAMEALQLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNIPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|28868500|ref|NP_791119.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851738|gb|AAO54814.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331015209|gb|EGH95265.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 245
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|326804105|ref|YP_004321923.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
gi|326651015|gb|AEA01198.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
Length = 247
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 62/118 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D++ +R+ L L K GYEV S +G +AYD E+ F ++ D+++P MDG+
Sbjct: 2 KKVLVVDDEESIRKLLEYNLSKEGYEVTSSADGKAAYDLASEKNFDFIILDLMLPSMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ + + ++ +T ++KPF R++V + +L
Sbjct: 62 DVCKQLRQDKVNTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVVARMKAILRR 119
>gi|298246255|ref|ZP_06970061.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297553736|gb|EFH87601.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 247
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + L L +AGY VV+ N+G + + E L++ D+++P +DG+E
Sbjct: 3 KILVIEDEANIAQLLRLYLEQAGYAVVTANDGIAGIELHAREKPDLVILDLMLPMLDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T L KPF R++++ V +L
Sbjct: 63 VCRRIR-TWANTPILMLTARQGEEDRIAGLDSGADDYLVKPFSPREVISRVKAILRR 118
>gi|47564778|ref|ZP_00235822.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|47558151|gb|EAL16475.1| DNA-binding response regulator [Bacillus cereus G9241]
Length = 233
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++ + L K GY+VV +G A + ++ + L++ DI+MP+MDG E
Sbjct: 5 TILIADDDLEIAELIEIHLKKEGYQVVKATDGEDAIEIIQSQAIDLVVLDIMMPKMDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ ++F++ + ++KPF +LV VN L
Sbjct: 65 VTRQIR-TKQNMPIIFLSAKTSDFDKVKGLVLGADDYMTKPFTPIELVARVNAQLRR 120
>gi|229513635|ref|ZP_04403099.1| two-component system response regulator OmpR [Vibrio cholerae TMA
21]
gi|229521780|ref|ZP_04411198.1| two-component system response regulator OmpR [Vibrio cholerae TM
11079-80]
gi|229341374|gb|EEO06378.1| two-component system response regulator OmpR [Vibrio cholerae TM
11079-80]
gi|229349512|gb|EEO14468.1| two-component system response regulator OmpR [Vibrio cholerae TMA
21]
Length = 263
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 27 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 86
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 87 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 146
>gi|213968363|ref|ZP_03396507.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
gi|301384629|ref|ZP_07233047.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
Max13]
gi|302058918|ref|ZP_07250459.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
K40]
gi|302133031|ref|ZP_07259021.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213927001|gb|EEB60552.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
gi|330963154|gb|EGH63414.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 245
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAQFRRAFNEEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|88858377|ref|ZP_01133019.1| phosphate regulon transcriptional regulatory protein phoB
[Pseudoalteromonas tunicata D2]
gi|88819994|gb|EAR29807.1| phosphate regulon transcriptional regulatory protein phoB
[Pseudoalteromonas tunicata D2]
Length = 229
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ +R L+ L + G++ + + SA + E ++L D ++P
Sbjct: 1 MSRRILVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIASLMEPYPDMILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A++ + + ++ +T ++KPF ++L+ + ++
Sbjct: 61 GIQIAKKIKQSEYTRHIPIIMLTARGEEEDKVKGLEVGADDYVTKPFSPKELMARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|85860919|ref|YP_463121.1| response regulator receiver domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85724010|gb|ABC78953.1| response regulator receiver domain and a sigma factor phosphatase
domain [Syntrophus aciditrophicus SB]
Length = 402
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D D+R L + L KAGY++ ++G +V+ L+L DIVMP +D
Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ R D+ V+F++ + A A A ++KPF +++ +
Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQF 120
Query: 119 TIKN 122
I++
Sbjct: 121 KIRH 124
>gi|296453514|ref|YP_003660657.1| winged helix family two component transcriptional regulator
[Bifidobacterium longum subsp. longum JDM301]
gi|296182945|gb|ADG99826.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. longum JDM301]
Length = 256
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +DG
Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 85 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 140
>gi|257129263|gb|ACV42481.1| putative adenylate/guanylate cyclase [Lyngbya majuscula 19L]
Length = 1156
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
KIL+ +D+ R+ + L Y + + NG A + + L+L D++MP M G
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ +T ++ + L+KP +L+ + L +
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865
>gi|290892747|ref|ZP_06555739.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
gi|290557807|gb|EFD91329.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071]
Length = 225
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ +G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +LV + LL
Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|254788364|ref|YP_003075793.1| phosphate regulon transcriptional regulator PhoB [Teredinibacter
turnerae T7901]
gi|237687065|gb|ACR14329.1| phosphate regulon transcriptional regulatory protein PhoB
[Teredinibacter turnerae T7901]
Length = 235
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R L AL A Y V+ + A+ V + L+L D +MP + GI
Sbjct: 4 KKILVVDDERAIRDMLRVALEMADYAVLEAADAQEAHQIVVDTRPDLILLDWMMPGVSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ARR E+ ++ ++ +T ++KPF R+LV + +L
Sbjct: 64 EFARRLKSQEVTREIPIIMLTAKGEEDNKIQGLEIGADDYITKPFSPRELVARLKAVLRR 123
Query: 121 KN 122
+
Sbjct: 124 SD 125
>gi|239637303|ref|ZP_04678290.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
gi|239597140|gb|EEQ79650.1| transcriptional regulatory protein [Staphylococcus warneri L37603]
gi|330685295|gb|EGG96956.1| transcriptional regulatory protein WalR [Staphylococcus epidermidis
VCU121]
Length = 233
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVFCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|170016543|ref|YP_001727462.1| response regulator [Leuconostoc citreum KM20]
gi|169803400|gb|ACA82018.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Leuconostoc citreum
KM20]
Length = 235
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+V++ +G A +E L+L D ++PE+D
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYDVITAADGQEALALFNDEKPDLVLLDQMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + V+ +T + ++KPF R+LV V L
Sbjct: 60 GVEVLRQIRSK-SETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|328886560|emb|CCA59799.1| putative response regulator [Streptomyces venezuelae ATCC 10712]
Length = 269
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + + L +AG V +G A + E L++ D+++P +DG+E
Sbjct: 12 RILVVEDDPTVAEVVTGYLERAGCAVEHAADGPEALRRAAERWADLIVLDLMLPGLDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR P + V+ +T ++KPF R+LV V +L
Sbjct: 72 VCRRLRATGP-VPVIMLTARGDQEDRITGLEVGADDYVTKPFSPRELVLRVESVL 125
>gi|157146995|ref|YP_001454314.1| transcriptional regulator PhoB [Citrobacter koseri ATCC BAA-895]
gi|157084200|gb|ABV13878.1| hypothetical protein CKO_02772 [Citrobacter koseri ATCC BAA-895]
Length = 229
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYVTKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|298243521|ref|ZP_06967328.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297556575|gb|EFH90439.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 240
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ ED++ + L L AGY ++ +GA E L++ DI++P +D
Sbjct: 1 MAQKILIIEDEEGIIHLLNLYLKDAGYLTIAARDGADGLALHAREHPDLVVLDIMLPAID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR ++ +T +A + L KPF R+LV+ V +L
Sbjct: 61 GFEVCRRIRA-WSQTPILMLTARSAEDDRINGLELGADDYLLKPFSPRELVSRVRAILRR 119
>gi|260437006|ref|ZP_05790822.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
gi|292810315|gb|EFF69520.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
Length = 222
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEM 59
MN KIL+ +D+ +R+ + L + GY V +G +A D L++ D++MP+M
Sbjct: 1 MNNKILVVDDESRIRKIIRDFLVREGYVVCEAEDGEAALDIFCSNNDIDLIIMDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG +L + +L + ++ +T + + +SKPF + L VN LL
Sbjct: 61 DGWQLCKEVRKL-SKVPILMLTAKSEEQDELKGFELGVDEYISKPFSPKILTARVNALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|20808829|ref|NP_624000.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|167039802|ref|YP_001662787.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|307724873|ref|YP_003904624.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|20517480|gb|AAM25604.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
gi|166854042|gb|ABY92451.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|307581934|gb|ADN55333.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
Length = 231
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + L + G+ V++ NG + D ++E L++ D+++P +
Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + ++KPF R+LV V +L
Sbjct: 61 GEELCKRLRQ-FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRR 119
>gi|117922448|ref|YP_871640.1| osmolarity response regulator [Shewanella sp. ANA-3]
gi|117614780|gb|ABK50234.1| two component transcriptional regulator, winged helix family
[Shewanella sp. ANA-3]
Length = 241
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|332712429|ref|ZP_08432355.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
gi|332348724|gb|EGJ28338.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
Length = 1156
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
KIL+ +D+ R+ + L Y + + NG A + + L+L D++MP M G
Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ +T ++ + L+KP +L+ + L +
Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865
>gi|330895752|gb|EGH28041.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. japonica str. M301072PT]
Length = 187
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA +EP LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNDEPSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|159036736|ref|YP_001535989.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157915571|gb|ABV96998.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 230
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ +DD + + + L AGY+V +G +A V EP L++ D+++P +D
Sbjct: 1 MTQRVLVVDDDRTVSDVVCRYLEHAGYQVRHVGDGGAALAAVAAEPPDLVVLDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T A LSKPF R+LV V +L
Sbjct: 61 GLEVCRRLRAQPGGIPIIMLTARGDEADRVLGLQLGADDYLSKPFSPRELVLRVGSVLRR 120
>gi|229133392|ref|ZP_04262220.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228650065|gb|EEL06072.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
Length = 233
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ D++MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALKLLEEKKFDLIILDVMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + E ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 66 GIEVCMKIREER-NMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124
>gi|209695992|ref|YP_002263922.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
gi|208009945|emb|CAQ80259.1| chitin degradation sensor protein [Aliivibrio salmonicida LFI1238]
Length = 1127
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ + L L GY V + N+G ++ EE L+L D++MP M G E+
Sbjct: 723 LVADDEPVNLQVLSSFLKLEGYRVKTANDGPETLKQLEEETPELVLLDVMMPGMSGYEVC 782
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + L ++ +T LSKPF+ ++L + L
Sbjct: 783 QEVRKQYSHSQLPIIMLTALNQTQDRVRGFESGANDYLSKPFNKQELAARIKAHL 837
>gi|18311470|ref|NP_563404.1| DNA-binding response regulator [Clostridium perfringens str. 13]
gi|18146154|dbj|BAB82194.1| two-component response regulator [Clostridium perfringens str. 13]
Length = 228
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V ++G +A ++ +L++ D+++P +DG+E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|171323011|ref|ZP_02911673.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|171091604|gb|EDT37194.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
Length = 241
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|29831310|ref|NP_825944.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29608425|dbj|BAC72479.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 245
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q +LLAEDD +R L +AL GY V + +G A + P +LL D++MP +DG
Sbjct: 12 TQTVLLAEDDRAIRHALERALTLEGYAVTAVADGVEALAQAHRTPPDVLLLDVMMPGIDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ R ++ +T A + KPF + ++ + LL
Sbjct: 72 LQVCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 130
>gi|23464917|ref|NP_695520.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
gi|23325510|gb|AAN24156.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
Length = 256
Score = 155 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 23 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGID 81
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 82 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 140
>gi|296128518|ref|YP_003635768.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
gi|296020333|gb|ADG73569.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL ED++ R L LG+ GY+VV+ G A ++ E L+L D+++P +
Sbjct: 1 MT-RILLVEDEESYRDPLSYQLGREGYDVVTAATGPEALERFAEHGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR LD D+ V+ +T ++KP+ R+L+ + +L
Sbjct: 60 GTEVCRRLR-LDSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 RD 120
>gi|229084576|ref|ZP_04216846.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
gi|228698726|gb|EEL51441.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-44]
Length = 238
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG A +K + + L+L DI+MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDEALEKALQNDYDLILLDIMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + + KPF R++V V +L
Sbjct: 66 VCKGIREK-KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121
>gi|209520046|ref|ZP_03268823.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209499531|gb|EDZ99609.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 247
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD +R + + L G++V + NG + +++ E +L++ DI+MPE+D
Sbjct: 1 MNQTILIVDDDPVVRDLVSEYLHGRGFQVATLENGLALQRRLQRERPALVVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|218898283|ref|YP_002446694.1| regulatory protein VanR [Bacillus cereus G9842]
gi|218544757|gb|ACK97151.1| regulatory protein VanR [Bacillus cereus G9842]
Length = 228
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIQALQLLEEKEFDLVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|86138139|ref|ZP_01056714.1| two-component response regulator [Roseobacter sp. MED193]
gi|85825166|gb|EAQ45366.1| two-component response regulator [Roseobacter sp. MED193]
Length = 224
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD +R + AL +AG++VV+ +G A E ++ DI +PE+DG E
Sbjct: 2 KILLVDDDPRLRDLVRIALERAGWQVVTAADGQEALLHASREDPDFIVLDIGLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++F+T ++KPF R+LV + ++
Sbjct: 62 VCRRIRQR-SEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIRTIMKR 117
>gi|311280718|ref|YP_003942949.1| two component transcriptional regulator PhoB, winged helix family
[Enterobacter cloacae SCF1]
gi|308749913|gb|ADO49665.1| two component transcriptional regulator PhoB, winged helix family
[Enterobacter cloacae SCF1]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVTQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|228906400|ref|ZP_04070283.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228853216|gb|EEM97990.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 230
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|150017114|ref|YP_001309368.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903579|gb|ABR34412.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 227
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L GY ++ +NGA A + E F L++ D++MP +D
Sbjct: 1 MKTNILVVDDDKSIRNLIKVYLENEGYNIMEASNGAEALILINENNFDLIILDVMMPVLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E + ++F++ + ++KPF +L+ V L
Sbjct: 61 GISACLKIREDY-TMPIIFLSAKDEEIHKIEGLTVGADDYITKPFGSMELIARVKAQLRR 119
>gi|113972138|ref|YP_735931.1| osmolarity response regulator [Shewanella sp. MR-4]
gi|114049386|ref|YP_739936.1| osmolarity response regulator [Shewanella sp. MR-7]
gi|113886822|gb|ABI40874.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-4]
gi|113890828|gb|ABI44879.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-7]
Length = 241
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|323702183|ref|ZP_08113850.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323532870|gb|EGB22742.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 224
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + L + L GY V N+G + ++ P LL+ DI+MP +D
Sbjct: 1 MGARILVIDDDPKITAMLQRVLTYEGYRVEVANDGYTGLKMAQKNPPELLILDIMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + ++ ++ V L KPF L +L+ V LL
Sbjct: 61 GWEICRRFRREN-FIPILILSARDEVESRVKGLNLGADDYLVKPFALEELLARVQALLRR 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|149927072|ref|ZP_01915330.1| phosphate regulon transcriptional regulatory protein [Limnobacter
sp. MED105]
gi|149824293|gb|EDM83513.1| phosphate regulon transcriptional regulatory protein [Limnobacter
sp. MED105]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ + + L AG++V+ + A + E L+L D ++P
Sbjct: 1 MSSTILVVEDEPAIAELIAVNLSFAGHKVLRAADADQAKTLITAELPDLVLLDWMLPGKT 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ A E + V+ +T D ++KPF ++L+ + +L
Sbjct: 61 GIQFAHELRGHERTRHVPVIMLTARTEEQDKVDGLEAGADDYITKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|295398526|ref|ZP_06808560.1| response regulator [Aerococcus viridans ATCC 11563]
gi|294973249|gb|EFG49042.1| response regulator [Aerococcus viridans ATCC 11563]
Length = 255
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L +L K GYEV+ +G + + ++ D+++P+MDG+
Sbjct: 2 KKVLIVDDEQSILTLLKYSLEKEGYEVIQAEDGQTGLELAMNHQLDFIILDLMLPKMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ +T ++KPF R+++ + +L
Sbjct: 62 DVCKNLRQNKINTPILMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAILRR 119
>gi|223986415|ref|ZP_03636420.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
12042]
gi|223961611|gb|EEF66118.1| hypothetical protein HOLDEFILI_03732 [Holdemania filiformis DSM
12042]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +DD ++ + + L G++ +G A +R+ F L + D+++P+
Sbjct: 1 MNEKILIVDDDAEIAQLVSVYLKNEGFQTTVEYSGTEALKLIRDHKFDLAVLDVMLPDCS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + V+ +T ++KPF+ ++ V L
Sbjct: 61 GFHLCEEIRSHY-NYPVIMLTAKGEDIDKITGLTIGADDYITKPFNPVEMTARVKAQLRR 119
>gi|111021712|ref|YP_704684.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|110821242|gb|ABG96526.1| response regulator, two-component system [Rhodococcus jostii RHA1]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MN+ ++L+ +D+ ++ L +L G+EV + + GA D R ++ D++
Sbjct: 1 MNEKPVEARVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MP MDG L +R D V+F+T AV ++KPF L ++V +
Sbjct: 61 MPGMDGFGLLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLR 120
Query: 116 RLLTI 120
+L
Sbjct: 121 VILRR 125
>gi|323706108|ref|ZP_08117677.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534552|gb|EGB24334.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + L L GY VV +NG +K +E L+L D+++P++D
Sbjct: 1 MAHTILVIEDEAHILELLRYNLEAQGYNVVLTDNGKGGLEKCKETNPDLVLLDLMLPDID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ ++ E ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 61 GIDVCKKLKSDEHLKNIPIIMLTAKSEEVDKILGLELGADDYITKPFSIRELLARIKVVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323126805|gb|ADX24102.1| Two-component response regulator [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 236
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY +V+ +G A EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYGIVTAFDGREAVTIFEEEKPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEIRK-TSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|320160319|ref|YP_004173543.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
gi|319994172|dbj|BAJ62943.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
Length = 407
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD MR + K L G+E + NG A +K L++ D+ MPEMD
Sbjct: 1 MPEKILVVDDDALMRLMVTKTLSTEGFEFLEAENGVQAVEKAIAHQPDLIIMDVNMPEMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E +R + + ++ +T + V + KPF +L VN LL
Sbjct: 61 GYEACQRIRSNPITSAIPIILVTSLSTVEDKIKGFDSGADDYIPKPFDPIELTMRVNVLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254490292|ref|ZP_05103481.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylophaga thiooxidans DMS010]
gi|224464425|gb|EEF80685.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylophaga thiooxydans DMS010]
Length = 230
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ EDD +R L L +AG+ S +G + D ++++ ++L D ++P +D
Sbjct: 1 MATSVLVVEDDVAIRDMLSFTLKQAGFGCDSVGDGEAGLDFLKKQQPDMILLDWMLPGID 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE RR + ++ V+ +T A ++KPF +L+ + +L
Sbjct: 61 GIEFIRRLRANEFLANIPVIMLTAKGESEDMVKGLAVGADDYVNKPFSPPELMARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|163942589|ref|YP_001647473.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229014060|ref|ZP_04171184.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
gi|229169596|ref|ZP_04297299.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|163864786|gb|ABY45845.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228613871|gb|EEK70993.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|228747316|gb|EEL97195.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
Length = 232
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|308270767|emb|CBX27377.1| Response regulator mprA [uncultured Desulfobacterium sp.]
Length = 234
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L + Y V + +G A+DK+ E PF L++ DI+MP++DG+
Sbjct: 11 KILIVDDEHSLLKQLQQIFENQRYTVETATDGEEAFDKLFEAPFDLIILDIMMPKIDGLA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T V L KPF +L+ V L
Sbjct: 71 VLQEIRKSGIKTPVLMLTAKGDVEDKIKGLDLGADDYLPKPFSSDELMARVRALFRR 127
>gi|90415561|ref|ZP_01223495.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
HTCC2207]
gi|90332884|gb|EAS48054.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
HTCC2207]
Length = 240
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D+ +R L AL AG+ V+ +N A+ + + L+L D +MP G
Sbjct: 10 KHRILIVDDEAAIRDMLSIALEAAGFNVLQADNAQQAHASIIDNQPDLVLLDWMMPGTTG 69
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL RR EL ++ +T A + KPF R+L++ VN +L
Sbjct: 70 LELLRRLKRDELTAKTPIIMLTAKAEEDSKIAGLDSGADDYIPKPFSPRELISRVNAVLR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|15607897|ref|NP_215271.1| two component system response transcriptional positive regulator
PHOP [Mycobacterium tuberculosis H37Rv]
gi|31791945|ref|NP_854438.1| two component system response transcriptional positive regulator
PHOP [Mycobacterium bovis AF2122/97]
gi|121636681|ref|YP_976904.1| putative two component system response transcriptional positive
regulator phoP [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148821963|ref|YP_001286717.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis F11]
gi|215402547|ref|ZP_03414728.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis 02_1987]
gi|215410323|ref|ZP_03419131.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis 94_M4241A]
gi|215426010|ref|ZP_03423929.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis T92]
gi|215429607|ref|ZP_03427526.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis EAS054]
gi|219556618|ref|ZP_03535694.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis T17]
gi|224989153|ref|YP_002643840.1| putative two component system response transcriptional positive
regulator [Mycobacterium bovis BCG str. Tokyo 172]
gi|253797703|ref|YP_003030704.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 1435]
gi|254231072|ref|ZP_04924399.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis C]
gi|254363699|ref|ZP_04979745.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis str. Haarlem]
gi|254549724|ref|ZP_05140171.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260199772|ref|ZP_05767263.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T46]
gi|260203946|ref|ZP_05771437.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis K85]
gi|289442160|ref|ZP_06431904.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T46]
gi|289446322|ref|ZP_06436066.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis CPHL_A]
gi|289553015|ref|ZP_06442225.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 605]
gi|289568709|ref|ZP_06448936.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T17]
gi|289573376|ref|ZP_06453603.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis K85]
gi|289744482|ref|ZP_06503860.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis 02_1987]
gi|289749267|ref|ZP_06508645.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T92]
gi|289752806|ref|ZP_06512184.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis EAS054]
gi|289756845|ref|ZP_06516223.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis T85]
gi|289760884|ref|ZP_06520262.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis GM 1503]
gi|294993216|ref|ZP_06798907.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis 210]
gi|297633266|ref|ZP_06951046.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 4207]
gi|297730249|ref|ZP_06959367.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN R506]
gi|298524247|ref|ZP_07011656.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306774875|ref|ZP_07413212.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu001]
gi|306783417|ref|ZP_07421739.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu003]
gi|306787788|ref|ZP_07426110.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu004]
gi|306802382|ref|ZP_07439050.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu008]
gi|306806590|ref|ZP_07443258.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu007]
gi|306970980|ref|ZP_07483641.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu010]
gi|308369967|ref|ZP_07419731.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu002]
gi|308372942|ref|ZP_07430463.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu005]
gi|308374087|ref|ZP_07434824.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu006]
gi|313657574|ref|ZP_07814454.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN V2475]
gi|1550635|emb|CAB02400.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
REGULATOR PHOP [Mycobacterium tuberculosis H37Rv]
gi|31617532|emb|CAD93642.1| POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL POSITIVE
REGULATOR PHOP [Mycobacterium bovis AF2122/97]
gi|121492328|emb|CAL70795.1| Possible two component system response transcriptional positive
regulator phoP [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|124600131|gb|EAY59141.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis C]
gi|134149213|gb|EBA41258.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis str. Haarlem]
gi|148720490|gb|ABR05115.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis F11]
gi|224772266|dbj|BAH25072.1| putative two component system response transcriptional positive
regulator [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319206|gb|ACT23809.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 1435]
gi|289415079|gb|EFD12319.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T46]
gi|289419280|gb|EFD16481.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis CPHL_A]
gi|289437647|gb|EFD20140.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 605]
gi|289537807|gb|EFD42385.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis K85]
gi|289542463|gb|EFD46111.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T17]
gi|289685010|gb|EFD52498.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis 02_1987]
gi|289689854|gb|EFD57283.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis T92]
gi|289693393|gb|EFD60822.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis EAS054]
gi|289708390|gb|EFD72406.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis GM 1503]
gi|289712409|gb|EFD76421.1| two component system response transcriptional positive regulator
phoP [Mycobacterium tuberculosis T85]
gi|298494041|gb|EFI29335.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216541|gb|EFO75940.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu001]
gi|308325843|gb|EFP14694.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu002]
gi|308331751|gb|EFP20602.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu003]
gi|308335539|gb|EFP24390.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu004]
gi|308339307|gb|EFP28158.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu005]
gi|308343020|gb|EFP31871.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu006]
gi|308346905|gb|EFP35756.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu007]
gi|308350845|gb|EFP39696.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu008]
gi|308359436|gb|EFP48287.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu010]
gi|323720788|gb|EGB29858.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis CDC1551A]
gi|326905021|gb|EGE51954.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis W-148]
gi|328457482|gb|AEB02905.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis KZN 4207]
Length = 247
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
>gi|89896867|ref|YP_520354.1| hypothetical protein DSY4121 [Desulfitobacterium hafniense Y51]
gi|89336315|dbj|BAE85910.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 238
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD ++ + L + GY V+ G SA + +E L+L D+++PE+DG+E
Sbjct: 7 KILLVEDDVIIQELVNYNLQREGYTVIIAEEGNSALQLLDKEKPDLVLLDVMLPELDGLE 66
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ + L ++ ++ VA ++KPF R+L+ + L
Sbjct: 67 VCKKIRGNQETASLPIIMLSARDEVADRVIGLELGADDYVTKPFSPRELLARIKARLR 124
>gi|319893721|ref|YP_004150596.1| Two-component response regulator SA14-24 [Staphylococcus
pseudintermedius HKU10-03]
gi|317163417|gb|ADV06960.1| Two-component response regulator SA14-24 [Staphylococcus
pseudintermedius HKU10-03]
gi|323463221|gb|ADX75374.1| two-component response regulator VicR [Staphylococcus
pseudintermedius ED99]
Length = 233
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GYEV +G A D + E+ ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYEVFVAYDGNDAVDLIYEKEPDIVLLDIMLPGQD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|266619520|ref|ZP_06112455.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
gi|288868930|gb|EFD01229.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
Length = 236
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K +E + N+G A E +L+L D+++P MDG
Sbjct: 4 KQRILIVDDDNNIAELISLYLTKECFETIIVNDGEEALRVFPEFKPNLVLLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YSVCREMRAQSP-VPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|229099332|ref|ZP_04230263.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
gi|229118343|ref|ZP_04247699.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228665173|gb|EEL20659.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228684150|gb|EEL38097.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
Length = 232
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A + + L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQSIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAKY-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|167968859|ref|ZP_02551136.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
gi|308397079|ref|ZP_07492385.2| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu012]
gi|308367020|gb|EFP55871.1| two component system transcriptional regulator phoP [Mycobacterium
tuberculosis SUMu012]
Length = 240
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 15 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 75 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|308047930|ref|YP_003911496.1| two component transcriptional regulator, winged helix family
[Ferrimonas balearica DSM 9799]
gi|307630120|gb|ADN74422.1| two component transcriptional regulator, winged helix family
[Ferrimonas balearica DSM 9799]
Length = 240
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MNQ K+L+ +DD +R L + L + G++V S + + E F LL+ D+++P
Sbjct: 1 MNQETTKVLVVDDDMRLRNLLERYLVEQGFQVRSAADSEQMDRHLERENFHLLVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR + ++ ++ +T L KPF+ R+L+ + +
Sbjct: 61 GEDGLSICRRLRQKGNEIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRR 124
>gi|253681323|ref|ZP_04862121.1| transcriptional regulatory protein ResD [Clostridium botulinum D
str. 1873]
gi|253562561|gb|EES92012.1| transcriptional regulatory protein ResD [Clostridium botulinum D
str. 1873]
Length = 228
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+++ + L +GY +G SA E L+L D+++P MD
Sbjct: 4 MLGKILIVDDDENICEIIKMYLESSGYSTEIRYDGKSAQSAFFEYKPDLVLLDVMLPHMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + D ++ V+ +T + + KPF ++L+ + +L
Sbjct: 64 GIDVLKWIR-RDSEIPVIMLTAKGETFDKVLALELGADDYIVKPFEPKELIARIKAVLRR 122
Query: 121 KN 122
N
Sbjct: 123 YN 124
>gi|228932078|ref|ZP_04094970.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228827661|gb|EEM73403.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 242
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|254478803|ref|ZP_05092170.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
gi|214035258|gb|EEB75965.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
Length = 231
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + L + G+ V++ NG + D ++E L++ D+++P +
Sbjct: 1 MNKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + ++KPF R+LV V +L
Sbjct: 61 GEELCKRLRQ-FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRR 119
>gi|86605678|ref|YP_474441.1| response regulator [Synechococcus sp. JA-3-3Ab]
gi|86554220|gb|ABC99178.1| response regulator [Synechococcus sp. JA-3-3Ab]
Length = 374
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R L ++L + GY V + G +K L++ D +MP+MD
Sbjct: 1 MTA-ILIVDDDPTIRLVLKRSLERQGYTVEMASGGLEGLEKAHLLTPGLIICDWMMPDMD 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR + +T V + LSKP +L V L
Sbjct: 60 GLEVCRRIKADPKFSTTFFILLTARTEVEDRIQGLDAGADEFLSKPIDPNELRARVRAGL 119
Query: 119 TI 120
+
Sbjct: 120 RL 121
>gi|51245737|ref|YP_065621.1| Pho two-component system sensor histidine kinase [Desulfotalea
psychrophila LSv54]
gi|50876774|emb|CAG36614.1| related to two-component system response regulator (Pho family)
[Desulfotalea psychrophila LSv54]
Length = 242
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ ED+ D+++ + L +AG+ V ++G A + E F +L DI++P +
Sbjct: 1 MAKLHILIVEDEADIQQLVSYNLVRAGFNVTCADSGEEALGCLAREAFDCILLDIMLPGI 60
Query: 60 DGIELARRATE----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G+E+ + + LD ++ +T D ++KPF + LV V
Sbjct: 61 SGLEVCQSIRQNEGKLDAGSPIIMMTAKGEEEDIIDGLEKGADDYITKPFSPKVLVARVK 120
Query: 116 RLLTI 120
++
Sbjct: 121 AVVRR 125
>gi|319650237|ref|ZP_08004383.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
gi|317398068|gb|EFV78760.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
Length = 231
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+AED+ + R L L GY+V +G A + R + L++ DI++P
Sbjct: 1 MKESILVAEDEAKIARLLEIELEFEGYQVTKAMDGYQAMELYRTGRWDLIILDIMLPGFS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR D ++ +T ++V ++KPF + +L+ + L I
Sbjct: 61 GIEILRRIRSKDKQTPILLLTAKSSVEDKVSGLDLGANDYITKPFQIEELLARIRAALRI 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|295106285|emb|CBL03828.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Gordonibacter pamelaeae
7-10-1-b]
Length = 236
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G
Sbjct: 5 TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D+ ++ +T V L KPF R+LV LL
Sbjct: 65 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRR 122
>gi|297569540|ref|YP_003690884.1| two component transcriptional regulator, winged helix family
[Desulfurivibrio alkaliphilus AHT2]
gi|296925455|gb|ADH86265.1| two component transcriptional regulator, winged helix family
[Desulfurivibrio alkaliphilus AHT2]
Length = 237
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ EDD+++++ + L KAG++V+ +NG A V+ E L++ D+++P MDG
Sbjct: 9 KPTILIVEDDENIQQLVGYNLVKAGFQVIYADNGEQALALVQREAPDLVVLDVMLPGMDG 68
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + L ++ +T + ++KPF + LV+ V L
Sbjct: 69 YQICKTLRRDPRHRWLPIIMLTARSDDDDVTAGLDQGADDYITKPFSPKILVSRVKSALR 128
Query: 120 I 120
Sbjct: 129 R 129
>gi|33860694|ref|NP_892255.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|123965397|ref|YP_001010478.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
gi|33633636|emb|CAE18593.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|123199763|gb|ABM71371.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
Length = 248
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ +G A ++ L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYKVVTACDGKEALKLFKDYDPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRK-DSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|172058213|ref|YP_001814673.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171990734|gb|ACB61656.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ +D+ + L L +AG+ V + ++G + ++ +L++ D+++PE+D
Sbjct: 1 MKDKIIVVDDELSIATLLKFNLEQAGFVVETAHDGMTGLKLAEKQDAALIVLDLMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + + ++ +T L+KPF R++V V +L
Sbjct: 61 GLEVCKRLRQQKINTPILMLTAKDDEFDKVLGLELGADDYLTKPFSPREVVARVKAILRR 120
Query: 121 KN 122
N
Sbjct: 121 MN 122
>gi|194476927|ref|YP_002049106.1| two component transcriptional regulator, winged helix family
protein [Paulinella chromatophora]
gi|171191934|gb|ACB42896.1| two component transcriptional regulator, winged helix family
protein [Paulinella chromatophora]
Length = 268
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L GY V+ +G A ++ L++ D+++P++DG
Sbjct: 23 KATVLIVDDEPAVRRVLVTRLQLVGYRVICAEDGEEALTIFHQDQPDLIVLDVMLPKLDG 82
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ ++ L KPF ++L + +L
Sbjct: 83 FAVCRRLRAE-SCVPIIFLSALDTISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140
>gi|196047153|ref|ZP_03114370.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196022023|gb|EDX60713.1| DNA-binding response regulator [Bacillus cereus 03BB108]
Length = 225
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|330469914|ref|YP_004407657.1| winged helix family two component transcriptional regulator
[Verrucosispora maris AB-18-032]
gi|328812885|gb|AEB47057.1| two component transcriptional regulator, winged helix family
protein [Verrucosispora maris AB-18-032]
Length = 236
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++ L +L AG++V + +G++A + R+ L++ D+++P++DG E
Sbjct: 12 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALNAARDHRPDLVVLDVMLPDLDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+F+T A ++KPF L +L + +L
Sbjct: 72 VIRMMREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 128
>gi|298244000|ref|ZP_06967807.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297557054|gb|EFH90918.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 240
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ +R F+ L Y V+ +NG A D++RE L++ D++MPEMDG E
Sbjct: 12 TILIVDDEPRIRDFVRMNLEMEHYRVIEASNGLEALDRLREHLPDLVVLDVMMPEMDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E+ + V+ +T + ++KPF +L++ + LL
Sbjct: 72 TLKAIREV-STVPVVMLTVRQSEQDKIRGLDLGADDYIAKPFSPPELLSRIRALLRR 127
>gi|227494982|ref|ZP_03925298.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
gi|226831434|gb|EEH63817.1| DNA-binding response regulator [Actinomyces coleocanis DSM 15436]
Length = 227
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD + + L GY V C++G +A + L+L D+++P MD
Sbjct: 1 MTAKVLVVDDDTALAEMIGIVLETEGYNVDYCHSGDAALETFAATQPDLVLLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + D+ ++ +T + A + KPF ++L+ V L
Sbjct: 61 GIEICSLIRQK-SDVPIVMLTARSDTADVVAGLEAGADDYVPKPFKPKELIARVKARLRG 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|270292778|ref|ZP_06198989.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
gi|270278757|gb|EFA24603.1| DNA-binding response regulator VicR [Streptococcus sp. M143]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|229494339|ref|ZP_04388102.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
gi|229318701|gb|EEN84559.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + L +L G+EV + ++GA D R ++ D++MP MDG
Sbjct: 9 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D V+F+T ++ ++KPF L ++V + +L
Sbjct: 69 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 125
>gi|229108261|ref|ZP_04237882.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228675174|gb|EEL30397.1| Two-component response regulator [Bacillus cereus Rock1-15]
Length = 225
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|157412490|ref|YP_001483356.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
gi|157387065|gb|ABV49770.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
Length = 248
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ ++G A ++ L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYKVVTASDGKEALKLFKDYDPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRK-DSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|126701227|ref|YP_001090124.1| two-component response regulator [Clostridium difficile 630]
gi|254977229|ref|ZP_05273701.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255094558|ref|ZP_05324036.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255102817|ref|ZP_05331794.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255316313|ref|ZP_05357896.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255518973|ref|ZP_05386649.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255652153|ref|ZP_05399055.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260685121|ref|YP_003216406.1| two-component response regulator [Clostridium difficile CD196]
gi|260688779|ref|YP_003219913.1| two-component response regulator [Clostridium difficile R20291]
gi|115252664|emb|CAJ70507.1| Two-component response regulator, CheY family [Clostridium
difficile]
gi|260211284|emb|CBA66849.1| two-component response regulator [Clostridium difficile CD196]
gi|260214796|emb|CBE07526.1| two-component response regulator [Clostridium difficile R20291]
Length = 230
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD
Sbjct: 1 MNNTVLVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMILDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+
Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119
>gi|269792328|ref|YP_003317232.1| two component transcriptional regulator, winged helix family
[Thermanaerovibrio acidaminovorans DSM 6589]
gi|269099963|gb|ACZ18950.1| two component transcriptional regulator, winged helix family
[Thermanaerovibrio acidaminovorans DSM 6589]
Length = 226
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++D+ + L + + G+EV + +G + D +R + ++ DI++PEMDG E
Sbjct: 2 RLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ V+ +T +V L+KPF ++L+ VN L+
Sbjct: 62 VMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPFDFKELMARVNALMRR 118
>gi|24373128|ref|NP_717171.1| phosphate regulon response regulator PhoB [Shewanella oneidensis
MR-1]
gi|24347327|gb|AAN54615.1|AE015602_1 phosphate regulon response regulator PhoB [Shewanella oneidensis
MR-1]
Length = 239
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + + SA ++E L+L D + P
Sbjct: 11 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 70
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 71 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|323699409|ref|ZP_08111321.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. ND132]
gi|323459341|gb|EGB15206.1| two component transcriptional regulator, winged helix family
[Desulfovibrio desulfuricans ND132]
Length = 228
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ QKIL+ ED D R L L AG++V + +G + ++L D++MP
Sbjct: 1 MSAQKILVVEDHRDTRELLKYNLTAAGFDVAAAEDGQLGLNLAHAFKPDIILLDLMMPGT 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R+ + V+ +T + KPF R+LV + +
Sbjct: 61 DGLEVCRQLKGDPATARIPVIMLTAKGEEVDKIVGLELGADDYVVKPFSPRELVLRIKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|262373678|ref|ZP_06066956.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
gi|262311431|gb|EEY92517.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
Length = 254
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|157148989|ref|YP_001456308.1| osmolarity response regulator [Citrobacter koseri ATCC BAA-895]
gi|157086194|gb|ABV15872.1| hypothetical protein CKO_04827 [Citrobacter koseri ATCC BAA-895]
Length = 290
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 55 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 114
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 115 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 174
>gi|20809033|ref|NP_624204.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|20517704|gb|AAM25808.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
Length = 231
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY +G A +E+ L++ D+++P+MD
Sbjct: 1 MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ +T ++KPF +R+LV V L
Sbjct: 61 GFTVLKTLRQSM-TVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELVARVKANLRR 119
>gi|56965768|ref|YP_177502.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56912014|dbj|BAD66541.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 226
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ ++ ++ L K Y ++ +NGA A ++ ++ L++ D++M MDG
Sbjct: 4 KTVLVVDDEPELLELVVTYLRKESYRALTADNGADALKRIEQDAVDLVILDVMMEGMDGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + L V+ +T A + KPF ++L+ V L N
Sbjct: 64 HVCERIRQKHS-LPVIMLTARGNEADKVRGLKTGADDYMVKPFSPKELMARVEAALRRAN 122
>gi|88807098|ref|ZP_01122610.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
gi|88788312|gb|EAR19467.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
Length = 248
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A +E L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALTCFQECEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125
>gi|297564623|ref|YP_003683595.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296849072|gb|ADH62087.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 221
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD +R L L + GYEVV +G A K+ + SL++ D+++P + G E
Sbjct: 3 RVLLVDDDPAIREVLSAYLRQEGYEVVEAADGLEALGKIPQA--SLVVLDLMLPRLSGWE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR P+L V+ +T ++KPF R++V V LL
Sbjct: 61 VARELRRDYPELPVLMLTAKGEEEERIRGLDLGADDYVTKPFSPREVVARVRALLRR 117
>gi|307706668|ref|ZP_07643474.1| response regulator [Streptococcus mitis SK321]
gi|307617912|gb|EFN97073.1| response regulator [Streptococcus mitis SK321]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQYEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|258515817|ref|YP_003192039.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257779522|gb|ACV63416.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 237
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++IL+ ED+D +R+F+ L + ++V+ +G A + + L++ DI++P
Sbjct: 1 MKGQERILVVEDEDSIRQFITINLERNSFQVMEAVSGKEALTRSKTFRPHLMVLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ RR P + V+ +T + KPF+ +LV + +L
Sbjct: 61 MDGLEVCRRLRVESPGIAVIMLTARGQDIDKVMGLELGADDYVVKPFNPLELVARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|297572158|ref|YP_003697932.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
gi|296932505|gb|ADH93313.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
Length = 248
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ +R L +L AG+ V + G A +E L++ D+++P+ DG
Sbjct: 10 TAKILVVDDEPSIRELLSASLHFAGFSVETAATGRDAIRTYQEFDPDLVVLDVMLPDFDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E D+ V+F+T + ++KPF L ++V + +L
Sbjct: 70 YEVLRRMREQGSDIPVLFLTAKDDLRDKLQGLNAGADDYVTKPFSLEEVVTRIQVILRR 128
>gi|317126999|ref|YP_004093281.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315471947|gb|ADU28550.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 236
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ IL+ EDD D+ R ++ L K G+ V + G + ++ F L+L D+++PE
Sbjct: 1 MSHTRNILIVEDDKDIARIVVDHLRKEGFHVTWASTGMEGLEDFKQNSFDLVLVDLMLPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG L + L+ ++ ++ I+ A L+KPF L +L ++ L
Sbjct: 61 MDGFTLCKTIR-LESNVPLLIISAKQEDASKIRGLDLGADDYLTKPFSLIELSARIHSHL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|228989445|ref|ZP_04149432.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
12442]
gi|228770293|gb|EEM18870.1| hypothetical protein bpmyx0001_2190 [Bacillus pseudomycoides DSM
12442]
Length = 237
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L K L + Y V NG A + ++L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDIAINGEEALHLFNQNKYNLIILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + ++V + L+
Sbjct: 65 VCRRLRNKT-NIPILMLTAKDQEVDKILGLSIGADDYITKPFSINEVVARIKALMRR 120
>gi|229159731|ref|ZP_04287740.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623756|gb|EEK80573.1| Two-component response regulator [Bacillus cereus R309803]
Length = 225
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + + F+ +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCVVSGEEAISHIENQNFTFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYITKPFHEEELFARIEAVLRRTN 120
>gi|227545794|ref|ZP_03975843.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|227213910|gb|EEI81749.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
Length = 256
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 23 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGID 81
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 82 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 140
>gi|323490231|ref|ZP_08095447.1| winged helix family two component transcriptional regulator
[Planococcus donghaensis MPA1U2]
gi|323396071|gb|EGA88901.1| winged helix family two component transcriptional regulator
[Planococcus donghaensis MPA1U2]
Length = 231
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN I++ EDDD +R L L K GYEVV +G A + +E L+L D+ MP M
Sbjct: 1 MNAATIMIVEDDDGIRELLRLFLLKKGYEVVQAEDGFQALALLEKEKPDLILLDVEMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR L L ++F++ + ++KPF +L + +L
Sbjct: 61 DGLEVCRRIR-LKTTLPILFVSYRKELVYKIQGLEAGGDDYITKPFDFNELEARIRAILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|313901404|ref|ZP_07834874.1| response regulator receiver protein [Thermaerobacter subterraneus
DSM 13965]
gi|313468332|gb|EFR63776.1| response regulator receiver protein [Thermaerobacter subterraneus
DSM 13965]
Length = 144
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++ILL +D+ + + L ++L +AG+EV +G A ++ L++ D+++PE+D
Sbjct: 1 MSERILLVDDEAALVKGLRRSLEQAGFEVEVATDGRQALERFAAGGIDLIILDLMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + + ++ +T + KPF+ R+L+ + +L
Sbjct: 61 GLTVCREVRK-TSQVPIIMLTARDEDVDRIVGLELGADDYVVKPFNPRELIARIRAVLRR 119
>gi|297153813|gb|ADI03525.1| response regulator receiver [Streptomyces bingchenggensis BCW-1]
Length = 234
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ ED+ +R L +L AG+ V GA A VRE+ L++ D+++P+ DG
Sbjct: 4 SERLLVVEDEPTLRELLSASLRLAGFAVAPVATGAQALAAVREQRPDLIVLDVMLPDFDG 63
Query: 62 IELARRATELDP-----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
E+ RR P V+F+T A ++KPF+L +LV +
Sbjct: 64 FEVVRRLRGQHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123
Query: 117 LLTI 120
+L
Sbjct: 124 ILRR 127
>gi|269217413|ref|ZP_06161267.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
str. F0332]
gi|269213139|gb|EEZ79479.1| DNA-binding response regulator PhoP [Actinomyces sp. oral taxon 848
str. F0332]
Length = 246
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +R L +L AG++V+S +G A D L + D+++P+MDG
Sbjct: 10 TVLVVDDEPSIRELLSASLRFAGFDVLSAADGKEALDHQAGAHLDLAVLDVMLPDMDGFT 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ E D +L V+F+T V ++KPF L ++V + +L +
Sbjct: 70 ILRKLRERDAELPVLFLTARDDVKDKIQGLTVGGDDYITKPFSLEEVVARIRAVLRRTH 128
>gi|227489423|ref|ZP_03919739.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227541018|ref|ZP_03971067.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
gi|227090601|gb|EEI25913.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227183278|gb|EEI64250.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
Length = 233
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G++VV+ + G A E + D++MP MDG E
Sbjct: 7 KVLVVDDEPNIVELLQVSLRFQGFDVVTASGGEEALKVAEESRPDAFILDVMMPGMDGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E D V+F+T AV + KPF L +++ + +L
Sbjct: 67 LLTKLRETGHDGPVLFLTAKDAVEDKIHGLTIGADDYVVKPFSLEEVITRLRVILRR 123
>gi|145596198|ref|YP_001160495.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145305535|gb|ABP56117.1| response regulator receiver [Salinispora tropica CNB-440]
Length = 233
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++ L +L AG++V + +G++A +E L++ DI++P++DG E
Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATAISGSAALSAAKEHRPDLVVLDIMLPDLDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+F+T A ++KPF L +L + +L
Sbjct: 69 VIRLLREGGTRTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125
>gi|299143501|ref|ZP_07036581.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517986|gb|EFI41725.1| DNA-binding response regulator VicR [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 230
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + + L + G+EV +G +KV++ F L++ D++MP++D
Sbjct: 1 MFGKILVVDDEAAIAEIIEFNLKRDGFEVELAFDGEQCLEKVKDSNFDLIILDVMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + ++ +T + KPF +R+L V +L
Sbjct: 61 GFTVLRELRK-TRHIPIIMLTAKEDEVDKILGLELGADDYVVKPFSMRELTARVKAILRR 119
>gi|295705558|ref|YP_003598633.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294803217|gb|ADF40283.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 225
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ ILL +D+ D+ F+ AL GYEVV G A K++ L++ D++MP MD
Sbjct: 1 MNQTILLVDDEKDIISFMKDALQDEGYEVVFAYEGQEALTKLK-INPDLIVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + ++F++ L KPF +++L + L
Sbjct: 60 GFALCELIRKSIS-CPIIFLSAKQTEQDRVKGLLVGGDDYLVKPFSMKELKARIYAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|269216464|ref|ZP_06160318.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
gi|269129993|gb|EEZ61075.1| DNA-binding response regulator SrrA [Slackia exigua ATCC 700122]
Length = 239
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL ED+ +R + L + Y V + +G A D+ + F L++ D+++P + G
Sbjct: 6 TRRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALDEFGKHHFDLVVLDLMLPRVPG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D+ ++ +T V L KPF R+LV V LL
Sbjct: 66 ERVCRVIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR 123
>gi|302548596|ref|ZP_07300938.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
ATCC 53653]
gi|302466214|gb|EFL29307.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
ATCC 53653]
Length = 234
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD +R L +L AG+ VV GA A VRE+P L++ D+++P+ DG
Sbjct: 4 SERLLVVEDDATLRELLSASLRLAGFAVVPVATGAQALAAVREQPPGLIVLDVMLPDFDG 63
Query: 62 IELARRATELDP-----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
E+ RR P V+F+T A ++KPF+L +LV +
Sbjct: 64 FEVVRRLRGHHPSAAAGHPPVLFLTARDAPEDRISGLRAGGDDYVTKPFNLEELVLRIRA 123
Query: 117 LLTI 120
+L
Sbjct: 124 ILRR 127
>gi|239502003|ref|ZP_04661313.1| osmolarity response regulator [Acinetobacter baumannii AB900]
Length = 254
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ + ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQTNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|213691278|ref|YP_002321864.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213522739|gb|ACJ51486.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|320457342|dbj|BAJ67963.1| two-component response regulator [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 256
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +DG
Sbjct: 25 RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGIDGTA 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 85 LCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 140
>gi|205351709|ref|YP_002225510.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205271490|emb|CAR36308.1| phosphate regulon transcriptional regulatory protein PhoB
[Salmonella enterica subsp. enterica serovar Gallinarum
str. 287/91]
gi|326626742|gb|EGE33085.1| transcriptional regulator PhoB [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + A +K+ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNKLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|168217605|ref|ZP_02643230.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|182380315|gb|EDT77794.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 228
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V ++G +A ++ SL++ D+++P +DG+E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPSLVVLDMMLPGIDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|119774211|ref|YP_926951.1| response regulator receiver protein [Shewanella amazonensis SB2B]
gi|119766711|gb|ABL99281.1| two component transcriptional regulator, winged helix family
[Shewanella amazonensis SB2B]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + SA +++E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSVAEDFDSALGQLQEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + V+ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDEFTRQIPVIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323525232|ref|YP_004227385.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323382234|gb|ADX54325.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 241
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|255527989|ref|ZP_05394828.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186290|ref|ZP_06854694.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255508319|gb|EET84720.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296049091|gb|EFG88521.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ EDD+ + L + L K GYEV + G + ++ F+L + DI++PEMD
Sbjct: 1 MKEKLLIVEDDEAIANILKEHLEKEGYEVNWSSTGKEGLEDFKKYKFALAMVDIMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + ++ D+ +M ++ ++KPF L ++ V L
Sbjct: 61 GFTLCKNIRWINEDIPIMILSAKQTDMDKVKGLKLGADDYITKPFSLTEVSARVEAHLRR 120
>gi|26246403|ref|NP_752442.1| transcriptional regulator PhoB [Escherichia coli CFT073]
gi|26106801|gb|AAN78986.1|AE016756_169 Phosphate regulon transcriptional Regulatory protein phoB
[Escherichia coli CFT073]
Length = 229
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEVPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332980939|ref|YP_004462380.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332698617|gb|AEE95558.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 227
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ ED++ MR+ L + G+EVV +G A D + P L++ D+++P +DG
Sbjct: 5 RIMVVEDEERMRQLLHLYMQNEGFEVVDAYDGQQALDLFEKYPMDLVILDVMLPNVDGWT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + ++ +T + KPF ++LV V LL
Sbjct: 65 VCRQIRQ-GSQVPIIMLTARGEENDKLFGFDLGVDDYVVKPFSPKELVARVKALLKR 120
>gi|281411631|ref|YP_003345710.1| two component transcriptional regulator, winged helix family
[Thermotoga naphthophila RKU-10]
gi|281372734|gb|ADA66296.1| two component transcriptional regulator, winged helix family
[Thermotoga naphthophila RKU-10]
Length = 225
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D
Sbjct: 1 MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T + V L KPF LR+L+ V L+
Sbjct: 61 GWEILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|169632218|ref|YP_001705954.1| osmolarity response regulator [Acinetobacter baumannii SDF]
gi|169794452|ref|YP_001712245.1| osmolarity response regulator [Acinetobacter baumannii AYE]
gi|184159742|ref|YP_001848081.1| osmolarity response regulator [Acinetobacter baumannii ACICU]
gi|213158975|ref|YP_002320973.1| two-component system response regulator protein [Acinetobacter
baumannii AB0057]
gi|215482041|ref|YP_002324223.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
AB307-0294]
gi|260550801|ref|ZP_05825008.1| two-component system response regulator protein [Acinetobacter sp.
RUH2624]
gi|260556885|ref|ZP_05829102.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|262280372|ref|ZP_06058156.1| two-component system response regulator protein [Acinetobacter
calcoaceticus RUH2202]
gi|293610675|ref|ZP_06692975.1| two component transcriptional regulator [Acinetobacter sp. SH024]
gi|299768511|ref|YP_003730537.1| osmolarity response regulator [Acinetobacter sp. DR1]
gi|301346029|ref|ZP_07226770.1| osmolarity response regulator [Acinetobacter baumannii AB056]
gi|301512909|ref|ZP_07238146.1| osmolarity response regulator [Acinetobacter baumannii AB058]
gi|301595102|ref|ZP_07240110.1| osmolarity response regulator [Acinetobacter baumannii AB059]
gi|332850218|ref|ZP_08432581.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6013150]
gi|332868815|ref|ZP_08438420.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6013113]
gi|332874244|ref|ZP_08442164.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6014059]
gi|169147379|emb|CAM85240.1| two-component response regulator [Acinetobacter baumannii AYE]
gi|169151010|emb|CAO99647.1| two-component response regulator [Acinetobacter baumannii]
gi|183211336|gb|ACC58734.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Acinetobacter baumannii
ACICU]
gi|193078590|gb|ABO13619.2| two-component response regulator [Acinetobacter baumannii ATCC
17978]
gi|213058135|gb|ACJ43037.1| two-component system response regulator protein [Acinetobacter
baumannii AB0057]
gi|213986795|gb|ACJ57094.1| Transcriptional regulatory protein ompR [Acinetobacter baumannii
AB307-0294]
gi|260406111|gb|EEW99596.1| two-component system response regulator protein [Acinetobacter sp.
RUH2624]
gi|260409491|gb|EEX02792.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|262258150|gb|EEY76884.1| two-component system response regulator protein [Acinetobacter
calcoaceticus RUH2202]
gi|292827019|gb|EFF85384.1| two component transcriptional regulator [Acinetobacter sp. SH024]
gi|298698599|gb|ADI89164.1| osmolarity response regulator [Acinetobacter sp. DR1]
gi|322509655|gb|ADX05109.1| ompR [Acinetobacter baumannii 1656-2]
gi|323519675|gb|ADX94056.1| osmolarity response regulator [Acinetobacter baumannii TCDC-AB0715]
gi|332730862|gb|EGJ62170.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6013150]
gi|332733129|gb|EGJ64327.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6013113]
gi|332737528|gb|EGJ68435.1| transcriptional regulatory protein OmpR [Acinetobacter baumannii
6014059]
Length = 254
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ + ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|166032814|ref|ZP_02235643.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
27755]
gi|166027171|gb|EDR45928.1| hypothetical protein DORFOR_02529 [Dorea formicigenerans ATCC
27755]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + L + GY+V+ +G A + E+ +L++ D++MP+
Sbjct: 11 MEKIKILVVDDESRMRKLVKDFLEREGYQVLEAGDGLEAMEAFYAEKDIALIILDVMMPK 70
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + R + + ++ +T + +SKPF + LV VN LL
Sbjct: 71 MDGWQTCREIRQ-SSKVPIIMLTARGDERDELQGFDLGVDEYISKPFSPKILVARVNALL 129
Query: 119 TIKN 122
N
Sbjct: 130 RRSN 133
>gi|24379907|ref|NP_721862.1| putative response regulator CovR; VicR-like protein [Streptococcus
mutans UA159]
gi|290580113|ref|YP_003484505.1| putative response regulator [Streptococcus mutans NN2025]
gi|14600271|gb|AAK71319.1|AF393849_1 responder protein CovR [Streptococcus mutans]
gi|24377886|gb|AAN59168.1|AE014984_3 putative response regulator CovR; VicR-like protein [Streptococcus
mutans UA159]
gi|254997012|dbj|BAH87613.1| putative response regulator [Streptococcus mutans NN2025]
Length = 235
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GY+ ++ +G A K EE L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLAKEGYDTITAFDGREALSKYEEENPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-NSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|323489661|ref|ZP_08094888.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
gi|323396792|gb|EGA89611.1| transcriptional regulatory protein [Planococcus donghaensis MPA1U2]
Length = 238
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +D++ +RR L L + GY V NG A D E+ + +L D++MPE
Sbjct: 1 MSEEITVLVVDDEERIRRLLKMYLEREGYVVEEAENGVQALDMALEKDYHCILLDLMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ +A E ++ +T A + + KPF R++V V +L
Sbjct: 61 KDGVAVATELRE-TKMTPIIMLTAKGEEANRVEGFEAGADDYIVKPFSPREVVLRVKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|307151193|ref|YP_003886577.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306981421|gb|ADN13302.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 224
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + +F+ L GY V +G + RE L+L D ++P +
Sbjct: 1 MAAHILVVEDEAKLAQFIELELKYEGYTVTVAPDGLAGLTAARESHPDLILLDWMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + + ++ +T ++ + KPF L +L+ V L
Sbjct: 61 GLEICKRLRQTGDKVPIILLTAKDEISDRVTGLDAGADDYIVKPFSLEELLARVRANLRR 120
>gi|253987643|ref|YP_003038999.1| osmolarity response regulator [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253779093|emb|CAQ82253.1| transcriptional regulatory protein ompr [Photorhabdus asymbiotica]
Length = 239
Score = 155 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S N + E SL++ D+++P DG+
Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESISLIVLDLMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 66 VCQRLRNQNNSVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|227832653|ref|YP_002834360.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|262182862|ref|ZP_06042283.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|227453669|gb|ACP32422.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GYEV+ +G A + V E LL+ D++MP MDG+E
Sbjct: 2 KILVVDDEQAVRESLRRSLKFNGYEVILAADGVQAVEMVHSEHPELLILDVMMPNMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V L+
Sbjct: 62 VCRTLRSEGWDRPILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118
>gi|217963310|ref|YP_002348988.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|217332580|gb|ACK38374.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|307572111|emb|CAR85290.1| DNA-binding response regulator [Listeria monocytogenes L99]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ +G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEAIDGIEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ PD+ V+ +T A+A ++KPF +LV + LL
Sbjct: 60 GFELCQKMRASFPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|148653957|ref|YP_001281050.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
gi|148573041|gb|ABQ95100.1| two component transcriptional regulator, winged helix family
[Psychrobacter sp. PRwf-1]
Length = 240
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M+++ILL EDD D+ + L YEV G D + +E L++ D+++P+
Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60
Query: 59 MDGIELARRAT----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+++ ++ + ++ +T +SKPF R+L+ +
Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120
Query: 115 NRLLTI 120
+L
Sbjct: 121 RAVLRR 126
>gi|82703349|ref|YP_412915.1| two component transcriptional regulator [Nitrosospira multiformis
ATCC 25196]
gi|82411414|gb|ABB75523.1| two component transcriptional regulator, winged helix family
[Nitrosospira multiformis ATCC 25196]
Length = 234
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ + +L +A + V S N A + L+L D ++P M
Sbjct: 1 MAATILVVEDEPAIQELISYSLRQAKHTVSSTKNAEEAMKIINHTLPDLVLLDWMLPGMS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + AR D+ ++ +T A + ++KPF R+L+ + +L
Sbjct: 61 GADFARMLRRAARTKDIPIIMLTARADESDKVTGLESGADDYITKPFSPRELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|332975597|gb|EGK12487.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 234
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL ED++ + + + + L G+ V ++G Y ++E L++ D ++P MD
Sbjct: 1 MS-HILLVEDEERLGQLISEQLRLEGHRVTVASDGEEGYRMWKQEQPDLVILDWMLPRMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ E + VM +T ++KPF +L V LL
Sbjct: 60 GVEVCRKIRE-TSIVPVMMLTAKGDEMEKVWGLEVGADDYMTKPFSTWELKARVRALLRR 118
>gi|254479597|ref|ZP_05092907.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
gi|214034471|gb|EEB75235.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
Length = 231
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY +G A +E+ L++ D+++P+MD
Sbjct: 1 MSSKILIVDDEKPLVDIIKYNLEKEGYITFEAYDGEEAVKMAKEQNPDLIILDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFTVLKTLRQSM-TVPILMLTAKEEEVDKVLGLELGADDYITKPFSMRELIARVKANLRR 119
>gi|119486576|ref|ZP_01620626.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119456193|gb|EAW37325.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 253
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+A+D+ +RR L L GYEVV+ +G A E L++ D++MP+++G
Sbjct: 13 SGKILIADDESAIRRILTTRLSMVGYEVVAAADGREALSLFETENPDLVVLDVMMPKLNG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T VA L+KPF ++L + +L
Sbjct: 73 YGVCQKIRTQ-SEVPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIQAILRR 130
>gi|219667424|ref|YP_002457859.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537684|gb|ACL19423.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L L + G+ V + NG A +E + L+L D+++P + G E
Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLIALTLFKENSYDLVLLDLMLPGLSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+ +T + + KPF R++V + +L +
Sbjct: 62 ICREIRKI-SATPVIMLTAKVELEDRLQGLNLGADDYIVKPFSPREVVARIKAVLRRTH 119
>gi|313891148|ref|ZP_07824767.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
gi|313120511|gb|EFR43631.1| response regulator SaeR [Streptococcus pseudoporcinus SPIN 20026]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ + + L +AGY+V +GA A K + + L+++DI+MP MD
Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGYQVTVAGDGAQALAKFNQYQYDLIISDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + P+ +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFIGEVLLAKPNQPFLFITAKVSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120
>gi|307265495|ref|ZP_07547050.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919449|gb|EFN49668.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D++ + L +L + G+EV + +G DKVR + L++ DI++P++DG
Sbjct: 2 EKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEEGLDKVRLGNYDLVILDIMLPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T L+KPF+ R+L+ + LL
Sbjct: 62 SVCREIR-TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRR 118
>gi|307266330|ref|ZP_07547869.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|326391193|ref|ZP_08212737.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|306918637|gb|EFN48872.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|325992762|gb|EGD51210.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 231
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + + L K GY +G A +E+ L++ D+++P++D
Sbjct: 1 MSYRILIVDDEKPIVEIIKYNLEKEGYITYEAYDGEEALKIAKEQNPDLIILDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFSVLRTLRQSM-TIPILMLTAKEEEVDKVLGLELGADDYITKPFSIRELIARVKANLRR 119
>gi|297158456|gb|ADI08168.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 247
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R L ++L GY + +G A +KV L++ D++MP MDG+
Sbjct: 12 RILIVDDEPAVREALQRSLAFEGYLTETALDGLDALEKVGAYDPELIVLDVLMPRMDGLT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR + V+ +T V L KPF L +L+ + LL +
Sbjct: 72 AARRLRATGVTVPVLMLTARDTVGDRVTGLDAGADDYLVKPFELDELLARIRALLRRSS 130
>gi|251778440|ref|ZP_04821360.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
str. 'BoNT E Beluga']
gi|243082755|gb|EES48645.1| transcriptional regulatory protein ResD [Clostridium botulinum E1
str. 'BoNT E Beluga']
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R + L K G+ + ++G + +E L++ DI+MP+M+
Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E+ ++ V+F+T + ++KPF + LV +V LL
Sbjct: 61 GLEMLEKLREV-SNVPVIFLTAKGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119
>gi|118477427|ref|YP_894578.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|229090987|ref|ZP_04222211.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-42]
gi|229184209|ref|ZP_04311418.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BGSC 6E1]
gi|118416652|gb|ABK85071.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|228599324|gb|EEK56935.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BGSC 6E1]
gi|228692388|gb|EEL46123.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-42]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|153952801|ref|YP_001393566.1| sensory transduction protein [Clostridium kluyveri DSM 555]
gi|219853466|ref|YP_002470588.1| hypothetical protein CKR_0123 [Clostridium kluyveri NBRC 12016]
gi|146345682|gb|EDK32218.1| Predicted sensory transduction protein [Clostridium kluyveri DSM
555]
gi|219567190|dbj|BAH05174.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + + AGYEV N+G SA E L++ DI++P +DGI+
Sbjct: 7 KILIVDDDENICEVIKMYVESAGYEVQVANDGKSAETTFLEYKPDLVILDIMLPNIDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + KPF ++++ + +L
Sbjct: 67 VLKWIRKDY-ETPVIMLTAKGETFDKVLGLELGADDYIVKPFEPKEMLARIKAVLRR 122
>gi|126740199|ref|ZP_01755888.1| two-component response regulator [Roseobacter sp. SK209-2-6]
gi|126718654|gb|EBA15367.1| two-component response regulator [Roseobacter sp. SK209-2-6]
Length = 227
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD +R + AL +A ++V++ +G A E L++ DI +PE+DG E
Sbjct: 2 KILLVDDDPRLRELVRIALERADWQVITAADGQEALLHAAREAPDLIVLDIGLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++F+T ++KPF R+LV + +
Sbjct: 62 VCRRIRQR-SEVPILFLTARDDEVDCILGLELGADDYVTKPFSPRELVARIKAIAKR 117
>gi|124024919|ref|YP_001014035.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
gi|123959987|gb|ABM74770.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
Length = 248
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + LL
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCLLRR 125
>gi|172058889|ref|YP_001815349.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171991410|gb|ACB62332.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+AED+ +R F++ L +AGYEV+ NG A D ++ F +LL DI+MPE+D
Sbjct: 1 MT-KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + +A D + ++ +T + ++KPF +L+ + LL
Sbjct: 60 GFAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRR 119
>gi|302391634|ref|YP_003827454.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
gi|302203711|gb|ADL12389.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +KIL+ +D++++ + L K GY+V +G +A DK++EE LL+ D+++PE+
Sbjct: 1 MKEKKILVVDDEENIVELVKFNLEKEGYQVFVTYDGQAALDKLQEEDIDLLVLDLMLPEI 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+++ R+ D DL ++ +T ++KPF R+LV V +
Sbjct: 61 GGLDICRQIRNDDELSDLPIIMLTAKEKEVDRILGLELGADDYVTKPFSPRELVARVKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|209695880|ref|YP_002263810.1| response regulator homolog PhoB (phosphate regulon transcriptional
regulatory protein) [Aliivibrio salmonicida LFI1238]
gi|208009833|emb|CAQ80141.1| response regulator homolog PhoB (phosphate regulon transcriptional
regulatory protein) [Aliivibrio salmonicida LFI1238]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GYE + + +A + E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDTALALLCEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|138895267|ref|YP_001125720.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|134266780|gb|ABO66975.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ M L L GY V C +G +A + L+L DI+MPE+DG E
Sbjct: 3 TILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPELDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E ++ ++ +T ++KPF +L+ + +L
Sbjct: 63 TCKRIRE-FSNVPIIMVTARDQTTDIVQGLKIGADDYITKPFDESELLARIEAVLRR 118
>gi|160878314|ref|YP_001557282.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160426980|gb|ABX40543.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 238
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD ++ + L K ++ +G A + RE +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YEVCREVRK-TSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRR 121
>gi|51893644|ref|YP_076335.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51857333|dbj|BAD41491.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 233
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + + L GY V +NGA A V EE L++ DI+MP MDG+E+
Sbjct: 6 ILVVDDEQAIADLIEIHLLAEGYRVRKADNGADALRIVAEEDPDLVVLDIMMPGMDGLEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ ++ ++ + L+KPF+ +LV V L
Sbjct: 66 CRAIRRER-NVPILMLSAKSEDVDKILGLKTGADDYLTKPFNPLELVARVKAQLRR 120
>gi|300172610|ref|YP_003771775.1| two-component response regulator [Leuconostoc gasicomitatum LMG
18811]
gi|299886988|emb|CBL90956.1| Two-component response regulator yycF [Leuconostoc gasicomitatum
LMG 18811]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GYEVV+ +G A EE L+L D ++PE+D
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYEVVTAADGQEALTVFNEEKPDLVLLDQMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + V+ +T + ++KPF R+LV V L
Sbjct: 60 GVEVLRQIRSK-SETPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229065401|ref|ZP_04200655.1| Two-component response regulator [Bacillus cereus AH603]
gi|228715871|gb|EEL67636.1| Two-component response regulator [Bacillus cereus AH603]
Length = 233
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIGALQLLEEKEFDLIILDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A L+KPF+ +L+ V L
Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 124
>gi|159039592|ref|YP_001538845.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157918427|gb|ABV99854.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 233
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++ L +L AG++V + +G++A ++ L++ D+++P++DG E
Sbjct: 9 RLLVVEDDPNILELLSASLRFAGFDVATATSGSAALTAAKDHRPDLVVLDVMLPDLDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+F+T A ++KPF L +L + +L
Sbjct: 69 VIRMMREGGARTPVVFLTARDATDDKIRGLTLGGDDYVTKPFSLEELTARIRAVLRR 125
>gi|17351928|gb|AAL38200.1|AF319444_1 putative response regulator RR26 [Listeria monocytogenes]
Length = 237
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K G++V +G A + V E L+L DI++P DGI
Sbjct: 4 KKILVLDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVEEVQPDLILLDIMLPGRDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + D+ ++ +T + ++KPF R+L+ V L +
Sbjct: 64 EVCREVRKKY-DMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKANLRRHS 122
>gi|332968660|gb|EGK07713.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Psychrobacter sp. 1501(2011)]
Length = 240
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M+++IL+ EDD D+ + L YEV G D + +E L++ D+++P+
Sbjct: 1 MSKQILIIEDDPDLAELISDYLTMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60
Query: 59 MDGIELARRATE----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+++ ++ + ++ +T ++KPF R+L+ +
Sbjct: 61 MDGMQVCQKIRGGKNTQTNKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120
Query: 115 NRLLTI 120
+L
Sbjct: 121 RAVLRR 126
>gi|329576541|gb|EGG58048.1| putative transcriptional regulatory protein WalR [Enterococcus
faecalis TX1467]
Length = 159
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYEV + +G A +KV E L++ D+++P+MDG+
Sbjct: 2 KKILVVDDEKPISEIVKYNLVKEGYEVFTAYDGEEALEKVEEVEPDLIILDLMLPKMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + D+ ++ +T + ++KPF R+LV V L
Sbjct: 62 EVAREVRKTH-DMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRR 118
>gi|149010945|ref|ZP_01832250.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
gi|147764581|gb|EDK71511.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|318604580|emb|CBY26078.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Yersinia enterocolitica subsp. palearctica Y11]
Length = 279
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 111 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170
Query: 119 TI 120
Sbjct: 171 RR 172
>gi|229135700|ref|ZP_04264477.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
gi|228647798|gb|EEL03856.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M
Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIDLVVLDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRGKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|169350204|ref|ZP_02867142.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
gi|169292987|gb|EDS75120.1| hypothetical protein CLOSPI_00948 [Clostridium spiroforme DSM 1552]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ D+R + L K G+E++ +NG A D E L + D++MP MD
Sbjct: 1 MKPRVLVVDDEKDIRELIGFYLNKEGFEMLEASNGEEALDIFENEYVDLGIIDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL E D+ V+ +T + + KPF +L+ V +L
Sbjct: 61 GFELVENLKE-FKDIPVIMLTAKGESKDKLRGFSVGVDDYVVKPFDPTELMARVKAVLKR 119
>gi|218895705|ref|YP_002444116.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228899336|ref|ZP_04063599.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|218542826|gb|ACK95220.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228860367|gb|EEN04764.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|159037489|ref|YP_001536742.1| response regulator receiver modulated diguanylate cyclase
[Salinispora arenicola CNS-205]
gi|157916324|gb|ABV97751.1| response regulator receiver modulated diguanylate cyclase
[Salinispora arenicola CNS-205]
Length = 326
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+D+ RF+ L GYEV+ +G A + + + L + D++MP +DG+EL
Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHARDGQEALEVIAQHRPDLAVVDLMMPRVDGLEL 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + L V+ +T + L KPF +LV V+ L
Sbjct: 71 TRRLRADPMTAALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128
>gi|330470318|ref|YP_004408061.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328813289|gb|AEB47461.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
Length = 227
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED++ L L K G+EV G SA + ++L D+++PEM
Sbjct: 1 MS-RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRAGADIVLLDLMLPEMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ +T + ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQLRQR-SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 QS 120
>gi|330467983|ref|YP_004405726.1| winged helix family two component transcriptional regulator
[Verrucosispora maris AB-18-032]
gi|328810954|gb|AEB45126.1| two component transcriptional regulator, winged helix family
protein [Verrucosispora maris AB-18-032]
Length = 259
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ EDD +R L +AG+ V + +G R L++ D+++P +D
Sbjct: 34 MDGRVLVVEDDASIREVTALGLRRAGFRVDTAADGRQGLAAWRAGSVDLIVLDVLLPGLD 93
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + + ++ +T L KPF L +LV V LL
Sbjct: 94 GLQVCREIRRSNA-VPILMLTARTDTIDVVVGLECGADDYLRKPFDLPELVARVRSLLRR 152
>gi|315659978|ref|ZP_07912836.1| response regulator [Staphylococcus lugdunensis M23590]
gi|315494879|gb|EFU83216.1| response regulator [Staphylococcus lugdunensis M23590]
Length = 238
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 6 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 66 GMEVCREVRKKF-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 124
>gi|307547006|ref|YP_003899485.1| phosphate regulon transcriptional regulator PhoB [Halomonas
elongata DSM 2581]
gi|307219030|emb|CBV44300.1| phosphate regulon transcriptional regulatory protein PhoB
[Halomonas elongata DSM 2581]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +D+ +R + AL A Y V+ +N +A+ + + L+L D +MP
Sbjct: 1 MTAKTVLIVDDEAPIREMIAVALEMADYHVLEADNAQAAHAMIVDHQPDLVLLDWMMPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR E ++ ++ +T + ++KPF R+LV + +
Sbjct: 61 SGIELARRLKREETTAEMPIIMLTAKSEEDNKIQGLDAGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|301052303|ref|YP_003790514.1| response regulator [Bacillus anthracis CI]
gi|300374472|gb|ADK03376.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|298485851|ref|ZP_07003928.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298159629|gb|EFI00673.1| TorCAD operon transcriptional regulatory protein torR [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 245
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA EEP LL+ D+++P DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPHEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWIRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|304318074|ref|YP_003853219.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779576|gb|ADL70135.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + L L K GY + +G +E+ L+L D+++P+MD
Sbjct: 1 MSSRILIIDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKLAQEKNPDLILLDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFTVLRILRQ-TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 119
>gi|238923975|ref|YP_002937491.1| response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
gi|238875650|gb|ACR75357.1| response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Eubacterium rectale ATCC 33656]
gi|291524721|emb|CBK90308.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
gi|291528957|emb|CBK94543.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A + + + ++L D+++P+MD
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALNMAKANSYDMILLDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQAIRE-FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|220901854|gb|ACL82957.1| VanRM [Enterococcus faecium]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AED++++ L L K GY+V+ ++G A ++ + L++ DI+MP+MDG E+
Sbjct: 6 ILIAEDEEEIADLLAIHLEKEGYDVIKVHDGQEALHVIQAQSIDLIILDIMMPKMDGYEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ ++F++ + ++KPF +LV VN L
Sbjct: 66 TRQVRAQY-NMPIIFLSAKTSDFDKVHGLVIGGDDYITKPFTPIELVARVNAQLRR 120
>gi|110803691|ref|YP_699201.1| DNA-binding response regulator [Clostridium perfringens SM101]
gi|110684192|gb|ABG87562.1| DNA-binding response regulator [Clostridium perfringens SM101]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ ED+ +R + K G+ V+ ++G A E L + DI+MP++D
Sbjct: 1 MNKTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E+ + ++ +T + ++KPF + L+ + LL
Sbjct: 61 GLAVCRNIREV-SNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKSKALLRR 119
>gi|187932993|ref|YP_001886720.1| ResD family transcriptional regulator [Clostridium botulinum B str.
Eklund 17B]
gi|187721146|gb|ACD22367.1| transcriptional regulatory protein ResD [Clostridium botulinum B
str. Eklund 17B]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R + L K G+ + ++G + +E L++ DI+MP+M+
Sbjct: 1 MKKSILIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E+ ++ V+F+T + ++KPF + LV +V LL
Sbjct: 61 GLEMLEKLREV-SNVPVIFLTAKGEEEDKLEGYQFGADDYMTKPFSPKVLVAKVKALLKR 119
>gi|206978377|ref|ZP_03239249.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|206743411|gb|EDZ54846.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|324324690|gb|ADY19950.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICAQSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTVDLVRGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|118466812|ref|YP_879977.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
gi|254773640|ref|ZP_05215156.1| DNA-binding response regulator PhoP [Mycobacterium avium subsp.
avium ATCC 25291]
gi|118168099|gb|ABK68996.1| DNA-binding response regulator PhoP [Mycobacterium avium 104]
Length = 239
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|108761671|ref|YP_629606.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
gi|108465551|gb|ABF90736.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ K IL+ EDD + L L GYEV+ +G + + +E L++ D+++P
Sbjct: 1 MSDKTRSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E++G E+ + + D V+ ++ + KPF L++L+ + +
Sbjct: 61 ELNGFEVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRR 124
>gi|315186290|gb|EFU20051.1| two component transcriptional regulator, winged helix family
[Spirochaeta thermophila DSM 6578]
Length = 226
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ D+ + L + GYEVVS G A +K R ++ D+++P M G+E
Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYEVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + ++ +T + ++KPF R L+ + +L
Sbjct: 62 VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKRT 121
Query: 122 N 122
+
Sbjct: 122 H 122
>gi|312882874|ref|ZP_07742606.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
gi|309369393|gb|EFP96913.1| osmolarity response regulator [Vibrio caribbenthicus ATCC BAA-2122]
Length = 239
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +DD +R L + L + G+ V S NG + E F L++ D+++P DG
Sbjct: 4 SHKILVVDDDARLRSLLERYLSEQGFHVRSVANGEQMDRLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR ++ L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHVNNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|229171432|ref|ZP_04299017.1| Two-component response regulator [Bacillus cereus MM3]
gi|228612136|gb|EEK69373.1| Two-component response regulator [Bacillus cereus MM3]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNIPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|24376106|ref|NP_720149.1| osmolarity response regulator [Shewanella oneidensis MR-1]
gi|24351138|gb|AAN57593.1|AE015895_2 transcriptional regulatory protein OmpR [Shewanella oneidensis
MR-1]
Length = 241
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQGSTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|46190748|ref|ZP_00121040.2| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Bifidobacterium longum DJO10A]
gi|189439936|ref|YP_001955017.1| putative response regulator [Bifidobacterium longum DJO10A]
gi|189428371|gb|ACD98519.1| Putative response regulator [Bifidobacterium longum DJO10A]
Length = 234
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAASTGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 118
>gi|322835012|ref|YP_004215039.1| transcriptional regulator [Rahnella sp. Y9602]
gi|321170213|gb|ADW75912.1| two component transcriptional regulator, winged helix family
[Rahnella sp. Y9602]
Length = 233
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A +K+ + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALEKI-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIETLKELRQRH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAMLRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|298243980|ref|ZP_06967787.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297557034|gb|EFH90898.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 252
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62
++L+ +D++++ F+ L G++V S N+G + +++ D++MP +DG+
Sbjct: 18 RVLVVDDEENIIEFIRLGLRYEGFQVESANDGETGIATALRINPDIIILDVMMPPGIDGL 77
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E ++ ++ +T V L+KPF +L+ + +L
Sbjct: 78 EVCRRLRENPTTREIPILMLTARDEVRDRIAGLRTGADDYLTKPFDFDELLERIRAILRR 137
Query: 121 K 121
+
Sbjct: 138 Q 138
>gi|228919505|ref|ZP_04082869.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840148|gb|EEM85425.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|217968684|ref|YP_002353918.1| two component transcriptional regulator PhoB, winged helix family
[Thauera sp. MZ1T]
gi|217506011|gb|ACK53022.1| two component transcriptional regulator PhoB, winged helix family
[Thauera sp. MZ1T]
Length = 236
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + L +AG+ VV N+ SA VRE L+L D ++P
Sbjct: 1 MPANILLVEDEPAIQELIAANLARAGHHVVRANDAESAQRIVREALPDLVLLDWMLPGAS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E ARR E D+ ++ +T + ++KPF R+LV + +L
Sbjct: 61 GVEFARRLRADERTRDIPIIMLTARGEEQDKVTALEVGADDYVTKPFSPRELVARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|218438945|ref|YP_002377274.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7424]
gi|218171673|gb|ACK70406.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7424]
Length = 1383
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +ILLA+D+ DMR ++ + L + YEV + +G +A + +R P L+L+D++MP ++G
Sbjct: 629 NGRILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLNG 687
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + L +L ++ ++ A + L KPF R+L+ + L
Sbjct: 688 FELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFSARELLARIEATLK 747
Query: 120 I 120
+
Sbjct: 748 M 748
>gi|220909111|ref|YP_002484422.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219865722|gb|ACL46061.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 263
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L AGY+V +G + L++ D+++P +D
Sbjct: 1 MKPRILVIDDDPAIAELVAINLEMAGYDVSQAADGVKGQALAVQLMPDLIMLDLMLPRVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R E + ++ +T + + L+KPF + +++ V LL
Sbjct: 61 GFTVCQRLRRDERTSAIPILMLTALSQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|115374028|ref|ZP_01461317.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
gi|310819375|ref|YP_003951733.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
gi|115368918|gb|EAU67864.1| response regulator DrrA [Stigmatella aurantiaca DW4/3-1]
gi|309392447|gb|ADO69906.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ EDD + L L GY+V+ +G K +E L++ DI++PE++G
Sbjct: 6 QRILVVEDDLSILTGLSINLRIEGYDVLQAQDGRVGLAKALDEAPDLVVLDIMLPELNGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + D V+ ++ + KPF L++L+ + +L ++
Sbjct: 66 DVLKELRQRGRDTPVVMLSAKGMEPDKILGLNLGADDYVVKPFGLQELLARIKAVLRRRH 125
>gi|41406689|ref|NP_959525.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395039|gb|AAS02908.1| PhoP [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 239
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|121996908|ref|YP_001001695.1| two component transcriptional regulator [Halorhodospira halophila
SL1]
gi|121588313|gb|ABM60893.1| two component transcriptional regulator, winged helix family
[Halorhodospira halophila SL1]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD +R LI +L + G+EV+ + +++R+ P L+L D ++P++
Sbjct: 1 MAVRILVVEDDPAVREMLITSLERQGFEVIPAVDAMQGSEQLRQRPPDLILLDWMLPQVS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E AR E + ++ +T ++KPF R+L V +L
Sbjct: 61 GVEWARELKEDDQTRQIPIILLTARGEEEDKVRGFDSGVDDYVTKPFSPRELAARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|84393908|ref|ZP_00992650.1| Response regulator [Vibrio splendidus 12B01]
gi|86145558|ref|ZP_01063888.1| Response regulator [Vibrio sp. MED222]
gi|218708602|ref|YP_002416223.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
gi|84375458|gb|EAP92363.1| Response regulator [Vibrio splendidus 12B01]
gi|85836529|gb|EAQ54655.1| Response regulator [Vibrio sp. MED222]
gi|218321621|emb|CAV17573.1| DNA-binding response regulator PhoB [Vibrio splendidus LGP32]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A +K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|317122468|ref|YP_004102471.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
gi|315592448|gb|ADU51744.1| two component transcriptional regulator, winged helix family
[Thermaerobacter marianensis DSM 12885]
Length = 255
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+D + + L + G E V +GA A + E +++ D+++P+ DG L
Sbjct: 33 VLVVDDEDALLELVAYNLRRNGMEPVLARDGAEALRCIEERRPQVIILDVMLPDTDGFTL 92
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E ++ +T + ++KPF R+LV + LL
Sbjct: 93 CRHLRERGVQTPILMLTARDSEIDKVLGLELGADDYVTKPFSPRELVARIKALLRR 148
>gi|302390749|ref|YP_003826570.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
gi|302201377|gb|ADL08947.1| two component transcriptional regulator, winged helix family
[Thermosediminibacter oceani DSM 16646]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ +D+ + L L K GYEV++ +G A + + +L+L D+++P+ D
Sbjct: 1 MGQKILVVDDEKPIVDILKYNLAKEGYEVIAAYDGEEAIEVAFSQNPNLILLDVMLPKQD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E ++ +T ++KPF +R+L+ + L
Sbjct: 61 GFQVCKKLREKLA-CPIIMLTAKGEEVDKVLGLELGADDYVTKPFGMRELMARIKANLRR 119
>gi|72383336|ref|YP_292691.1| two component transcriptional regulator [Prochlorococcus marinus
str. NATL2A]
gi|72003186|gb|AAZ58988.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. NATL2A]
Length = 248
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ +G A D R L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYQVVTACDGNEALDLFRNCEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|332160707|ref|YP_004297284.1| phosphate regulon transcriptional regulatory protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|325664937|gb|ADZ41581.1| phosphate regulon transcriptional regulatory protein [Yersinia
enterocolitica subsp. palearctica 105.5R(r)]
gi|330862470|emb|CBX72627.1| phosphate regulon transcriptional regulatory protein phoB [Yersinia
enterocolitica W22703]
Length = 279
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 51 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 110
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 111 GIQFIKHMKREVLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 170
Query: 119 TI 120
Sbjct: 171 RR 172
>gi|226953701|ref|ZP_03824165.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
gi|294651821|ref|ZP_06729115.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
ATCC 19194]
gi|226835573|gb|EEH67956.1| osmolarity response regulator [Acinetobacter sp. ATCC 27244]
gi|292822285|gb|EFF81194.1| transcriptional regulatory protein OmpR [Acinetobacter haemolyticus
ATCC 19194]
Length = 254
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|163938574|ref|YP_001643458.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163860771|gb|ABY41830.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|312898518|ref|ZP_07757908.1| response regulator receiver domain protein [Megasphaera
micronuciformis F0359]
gi|310620437|gb|EFQ04007.1| response regulator receiver domain protein [Megasphaera
micronuciformis F0359]
Length = 226
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+A+D+ MR+ + L GYEV+ +G A D E+ L+L D++MP DG
Sbjct: 2 ERILIADDEALMRQLVADFLRPEGYEVLEAVDGKQALDIFNEQKPDLVLLDVMMPGYDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ IT + ++KPF + LV ++ LL
Sbjct: 62 TVCREIR-RTSTVPIIMITAKDEEIDQLFAYDLGVDDYITKPFSPKLLVAKMKALLRR 118
>gi|307265851|ref|ZP_07547401.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919126|gb|EFN49350.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D
Sbjct: 1 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGVSGLKEALEGDYDLVLLDIMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ V+ +T V + ++KPF + +L V L
Sbjct: 61 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRK 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|294139921|ref|YP_003555899.1| phosphate regulon response regulator PhoB [Shewanella violacea
DSS12]
gi|293326390|dbj|BAJ01121.1| phosphate regulon response regulator PhoB [Shewanella violacea
DSS12]
Length = 229
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ +R L L + G+ S + SA + + E L+L D + P
Sbjct: 1 MTAKILIVEDESAIREMLAFVLDQHGFNTTSAEDFDSAINMISEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSS 124
>gi|229543964|ref|ZP_04433023.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229325103|gb|EEN90779.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 238
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ KIL+ +D++ +RR L L + Y + +G +A E+ +S +L DI+MP
Sbjct: 1 MDEDVKILVVDDEERIRRLLRMYLERENYTIDEAEDGDTALKMALEKDYSCILLDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ + E V+ +T A + + KPF R++V V LL
Sbjct: 61 KDGIEVCQELHEK-KMTPVIMLTAKGEEANRVEGFEVGADDYIVKPFSPREVVLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|257790033|ref|YP_003180639.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|317489476|ref|ZP_07947986.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325830166|ref|ZP_08163623.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
gi|257473930|gb|ACV54250.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|316911405|gb|EFV33004.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325487633|gb|EGC90071.1| transcriptional regulatory protein ResD [Eggerthella sp. HGA1]
Length = 236
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL ED+ +R + L + Y V + +G A ++ + F L++ D+++P + G
Sbjct: 5 TRRILLVEDEKAIRDAVTAYLERENYWVTAVGDGQEALEEFSKHHFDLVILDLMLPRVPG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D+ ++ +T V L KPF R+LV LL
Sbjct: 65 ERVCRAIRD-NSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARARALLRR 122
>gi|188590060|ref|YP_001921679.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
str. Alaska E43]
gi|188500341|gb|ACD53477.1| transcriptional regulatory protein ResD [Clostridium botulinum E3
str. Alaska E43]
Length = 223
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+ +R + L K G+ + ++G + +E L++ DI+MP+M+
Sbjct: 1 MKKSVLIVEDELKIRFLIRDYLLKDGFNIFEASDGEEGLFQFSKEKIDLIILDIMMPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E+ ++ V+F+T + ++KPF + LV +V LL
Sbjct: 61 GLEMLEKLREV-SNVPVIFLTARGEEEDKLEGYEFGADDYMTKPFSPKVLVAKVKALLKR 119
>gi|121534003|ref|ZP_01665829.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121307514|gb|EAX48430.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++I + +DD + L K G+ V ++GA ++++ + + D+++P++D
Sbjct: 1 MAKRIAIVDDDKKIVALLKTYFEKEGFVVYEAHDGAEGLRLIQDKTPDIAVLDVMLPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ +T + KPF R++V V +L
Sbjct: 61 GFEICRKLRKEG-NIPIIMLTARDEETDKLIGLELGADDYVVKPFSPREVVARVKAILRR 119
>gi|88811179|ref|ZP_01126435.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
Nb-231]
gi|88791718|gb|EAR22829.1| phosphate regulon response regulator PhoB [Nitrococcus mobilis
Nb-231]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + AL ++ Y V ++G + + E L+L D ++P M GI+
Sbjct: 3 KILIVEDEAAIREMIAMALIRSDYSVHQADSGEAGLTLLDEIVPDLVLLDWMLPGMSGID 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR D+ ++ +T ++KPF R+L+ + +L
Sbjct: 63 FARRVKRHPTYRDVPIIMLTARGEEEDKIRGLEVGADDFVTKPFSPRELLARIKAVLRR 121
>gi|219556445|ref|ZP_03535521.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis T17]
Length = 289
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 2 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 62 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 118
>gi|54303252|ref|YP_133245.1| putative two-component response regulator [Photobacterium profundum
SS9]
gi|46916680|emb|CAG23445.1| putative two-component response regulator [Photobacterium profundum
SS9]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M QK IL+ +D+ ++R L + LG+AG+ V+ NG + + + L++ DI+MP
Sbjct: 1 MEQKQILVVDDNFELRDALTEYLGRAGFSVIGAENGVAMWKLLESNTPDLIILDIMMPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ D ++ +T ++K F R+L+ + +L
Sbjct: 61 DGFTLCQKLR-RTSDTPIIMLTAVTEETDRVAGLEMGADDYITKSFSPRELLARIKTILR 119
Query: 120 IKN 122
+
Sbjct: 120 RSH 122
>gi|228899978|ref|ZP_04064216.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228859664|gb|EEN04086.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 218
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ +
Sbjct: 2 LVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++F+T + + KPF +LV + +L
Sbjct: 62 KEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAVLRR 115
>gi|239622508|ref|ZP_04665539.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|312133342|ref|YP_004000681.1| response regulator of two-component system [Bifidobacterium longum
subsp. longum BBMN68]
gi|322688478|ref|YP_004208212.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
gi|322690488|ref|YP_004220058.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|239514505|gb|EEQ54372.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291517414|emb|CBK71030.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Bifidobacterium longum
subsp. longum F8]
gi|311772562|gb|ADQ02050.1| Response Regulator of two-component system [Bifidobacterium longum
subsp. longum BBMN68]
gi|320455344|dbj|BAJ65966.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320459814|dbj|BAJ70434.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
Length = 234
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 118
>gi|158336368|ref|YP_001517542.1| two component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158306609|gb|ABW28226.1| two component transcriptional regulator, winged helix family
[Acaryochloris marina MBIC11017]
Length = 237
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+A+D+ +RR L L G+ V++ +G A + + L++ D++MP+++G
Sbjct: 6 QKILVADDEASIRRILETRLSMMGFVVITAADGEEALQVFQHQEPDLIILDVMMPKLNGY 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D+ ++ +T + VA + KPF ++L + + +L
Sbjct: 66 QVCQSLRQE-SDVPIIMLTALSDVADRITGLEMGADDYMVKPFSPKELESRIRCILRR 122
>gi|83721603|ref|YP_441449.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
E264]
gi|83655428|gb|ABC39491.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
E264]
Length = 259
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 19 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 78
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 79 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 138
Query: 121 K 121
+
Sbjct: 139 R 139
>gi|254818466|ref|ZP_05223467.1| DNA-binding response regulator PhoP [Mycobacterium intracellulare
ATCC 13950]
Length = 239
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVCTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|194014361|ref|ZP_03052978.1| two-component response regulator [Bacillus pumilus ATCC 7061]
gi|194013387|gb|EDW22952.1| two-component response regulator [Bacillus pumilus ATCC 7061]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ ED+ + R L L GYEV G + EE F L+L D+++PE+
Sbjct: 1 MNKGKILVVEDEKKIARVLSLELEYEGYEVTVKETGMDGLQALEEESFDLVLLDVMLPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + + ++ IT +V ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRVRKTNTATPIILITARGSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLR 120
Query: 120 I 120
+
Sbjct: 121 L 121
>gi|168205748|ref|ZP_02631753.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|168209726|ref|ZP_02635351.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|169343283|ref|ZP_02864293.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|182624276|ref|ZP_02952061.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|169298581|gb|EDS80662.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|170662683|gb|EDT15366.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170712050|gb|EDT24232.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|177910494|gb|EDT72867.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V ++G +A ++ +L++ D+++P +DG+E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|78183890|ref|YP_376324.1| two component transcriptional regulator [Synechococcus sp. CC9902]
gi|116071497|ref|ZP_01468765.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
gi|78168184|gb|ABB25281.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9902]
gi|116065120|gb|EAU70878.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
Length = 248
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RR L L GY VV+ +G A + L++ D++MP++DG
Sbjct: 8 KETILVVDDEASIRRILETRLSMIGYNVVTACDGTEALELFPNCMPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|187932476|ref|YP_001887260.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187720629|gb|ACD21850.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 236
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY V NG A + +RE+ L++ D++MP+++G
Sbjct: 4 NKTILIVDDEKEIRDLVEIYLKSEGYATVKACNGEEALNIIREQNIDLVILDVMMPKLNG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I+ + E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 64 IDTCLKIREER-EMPIIMLSAKSEGIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121
>gi|51209875|ref|YP_063539.1| Ycf27 [Gracilaria tenuistipitata var. liui]
gi|50657629|gb|AAT79614.1| ompR transcriptional regulator [Gracilaria tenuistipitata var.
liui]
Length = 241
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +R L L GY+V+S ++G R E +L++ D++MP++DG
Sbjct: 5 KEKILIVDDETSIRTILETRLSMIGYDVISASDGEEGLHIFRREYPNLVILDVMMPKLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T V+ + KPF ++L + +L
Sbjct: 65 YGVCQEIRKE-SDVPIIMLTALGDVSDRITGLELGADDYVIKPFSPKELEARIRCVLRR 122
>gi|304405488|ref|ZP_07387147.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304345527|gb|EFM11362.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ + +FL L G++V + +G +A + +E +++ D++MP MDG E
Sbjct: 8 RILLVDDEPHILQFLELGLANEGFDVRTAPDGMTAINLAQEFVPHVIVLDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + ++ V+ +T V L KPF +L+ + L +
Sbjct: 68 TCRMIKKGGSEVAVIMLTAKDEVDDRVKGLTLGADDYLVKPFSFDELLARIRARLRNQ 125
>gi|229077964|ref|ZP_04210573.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228705302|gb|EEL57679.1| Two-component response regulator [Bacillus cereus Rock4-2]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|229170549|ref|ZP_04298197.1| Two-component response regulator [Bacillus cereus AH621]
gi|228612898|gb|EEK70075.1| Two-component response regulator [Bacillus cereus AH621]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP +D
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEGLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A L+KPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLTKPFNPLELIARVKSQLRR 119
>gi|148660534|ref|YP_001282057.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
gi|148504686|gb|ABQ72495.1| putative two component system response transcriptional positive
regulator PhoP [Mycobacterium tuberculosis H37Ra]
Length = 247
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 22 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVMMPGMDGFG 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 82 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 138
>gi|221134984|ref|ZP_03561287.1| osmolarity response regulator [Glaciecola sp. HTCC2999]
Length = 241
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGFQVRSAANAEQMDRLLERENFHLIVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + + ++ +T L KPF+ R+L+ +L K+
Sbjct: 67 ICRRLRQKENTIPIIMLTAKGDEIDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRKS 125
>gi|75909575|ref|YP_323871.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75703300|gb|ABA22976.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 250
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDIVM 56
+IL+ ED++ ++ L AL + GY VV+ +G SA + ++ PF L++ D+++
Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFEPNGGDFPFDLVILDLML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139
Query: 117 LLTIK 121
LL +
Sbjct: 140 LLRRQ 144
>gi|282882277|ref|ZP_06290909.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
315-B]
gi|281297871|gb|EFA90335.1| transcriptional regulatory protein WalR [Peptoniphilus lacrimalis
315-B]
Length = 233
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + + GY V +G A + V++ +SL+L DI+MP+++
Sbjct: 1 MDIKILVVDDEQAIADIIKFNFEREGYGVDIAKDGLEALNFVKDNTYSLILLDIMMPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + V+ +T + KPF +R+L+ V +L
Sbjct: 61 GFDTLKEIRKSHK-TPVIMLTAREDEVDKVLGLELGADDYVVKPFSIRELIARVKAVLRR 119
>gi|78484886|ref|YP_390811.1| two component transcriptional regulator [Thiomicrospira crunogena
XCL-2]
gi|78363172|gb|ABB41137.1| two component transcriptional regulator, winged helix family
[Thiomicrospira crunogena XCL-2]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +R L L A Y+V+ N + + E +L D ++P + GI L
Sbjct: 6 ILVVEDEAAIRDMLSFTLTAANYKVIEAPNAEQGWKLLLEHQPDCVLLDWMLPGVSGISL 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A+R + ++ +T + KPF R LV V LL ++
Sbjct: 66 AQRIRQNDQTATTPIIMLTARGEENDQVQGFESGADDYVVKPFSPRALVARVKALLRRQS 125
>gi|184201479|ref|YP_001855686.1| OmpR family two-component response regulator [Kocuria rhizophila
DC2201]
gi|183581709|dbj|BAG30180.1| OmpR family two-component response regulator [Kocuria rhizophila
DC2201]
Length = 237
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L AG+EVV+ NG A K E L + D+++P++DG
Sbjct: 9 KLLVVDDEPNILELLATSLRFAGFEVVTAANGRDALLKAEAEDPDLAVLDVMLPDIDGFS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++F+T ++KPF L ++V + +L
Sbjct: 69 VTRKLRAAGRHFPILFLTAKDDTDDKVAGLTVGGDDYVTKPFSLDEVVARIRAVLRR 125
>gi|126695491|ref|YP_001090377.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
gi|126542534|gb|ABO16776.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
Length = 248
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+A+D+ +RR L L GY+VV+ +G A ++ L++ D++MP++DG
Sbjct: 8 KETILVADDEASIRRILETRLSMIGYKVVTARDGKEALKLFKDYEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRK-DSDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|322375301|ref|ZP_08049814.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
gi|321279564|gb|EFX56604.1| DNA-binding response regulator VicR [Streptococcus sp. C300]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKAIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|197304013|ref|ZP_03169045.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
29176]
gi|197296981|gb|EDY31549.1| hypothetical protein RUMLAC_02750 [Ruminococcus lactaris ATCC
29176]
Length = 230
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED++ + L +G+EV N+G + + F L++ D+++P +D
Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSGFEVEVANDGETGLRRGLAVEFDLIILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ ++KPF +LV V L
Sbjct: 61 GFEICRQIRGQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 119
>gi|284051845|ref|ZP_06382055.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
gi|291567764|dbj|BAI90036.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 253
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G
Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E+ D+ ++ +T VA L+KPF ++L ++ +L
Sbjct: 74 GVCQKIREI-SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130
>gi|196040633|ref|ZP_03107932.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
gi|196028423|gb|EDX67031.1| regulatory protein VanR [Bacillus cereus NVH0597-99]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L + + A + E+ F L++ DI+MP MD
Sbjct: 1 MESKILIVDDDKEIRNLISVYLENEDLKTQKAEDAIEALQLLEEKEFDLIILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 61 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 119
>gi|284047340|ref|YP_003397680.1| two component transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283951561|gb|ADB54305.1| two component transcriptional regulator, winged helix family
[Conexibacter woesei DSM 14684]
Length = 237
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILL +D+ ++ L L + GYEVV +G A + E PF L++ D+++P++DG
Sbjct: 5 STRILLVDDEQSIQALLSYPLRRDGYEVVQATDGREALARFEERPFDLVVLDVMLPQLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + ++ +T + ++KPF +R+ + V L
Sbjct: 65 LEVCRRLRSR-SSVPIIMLTAKSEEIDKVVGLEIGADDYITKPFSMREFRSRVKAALRR 122
>gi|223043280|ref|ZP_03613327.1| transcriptional regulatory protein ResD [Staphylococcus capitis
SK14]
gi|222443491|gb|EEE49589.1| transcriptional regulatory protein ResD [Staphylococcus capitis
SK14]
Length = 241
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E+ ++G AY + ++ +L D+++PEMD
Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|222094405|ref|YP_002528464.1| response regulator [Bacillus cereus Q1]
gi|221238462|gb|ACM11172.1| response regulator [Bacillus cereus Q1]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|218236076|ref|YP_002365447.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218164033|gb|ACK64025.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 225
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ +L ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNLPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|186684336|ref|YP_001867532.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186466788|gb|ACC82589.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 250
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 64/125 (51%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
+IL+ ED++ ++ L AL + GY V++ +G SA + ++ E PF L++ D+++
Sbjct: 20 RILVVEDEELIQEMLAVALEEEGYGVITAPDGRSAIEYLKSFETNSGEVPFDLIILDLML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 80 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139
Query: 117 LLTIK 121
LL +
Sbjct: 140 LLRRQ 144
>gi|315645110|ref|ZP_07898236.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315279531|gb|EFU42836.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ + +FL L G+EV S +G A +++ D++MP MDG+E
Sbjct: 8 RILLVDDEPHILQFLELGLRNEGFEVRSAPDGEQAVIVASNFEPHVVVLDVMMPGMDGLE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E D+ V+ +T + + KPF +L+ + L +
Sbjct: 68 VCRRLKEEGKDVAVIMLTAKDEIDDRVKGLTIGADDYMVKPFSFEELLARIQARLRNQ 125
>gi|253573896|ref|ZP_04851238.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251846373|gb|EES74379.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 239
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L L K GYEVV +G A E L+L D+++P D
Sbjct: 1 MQGKILVVDDEKPIADILKFNLEKEGYEVVLAFDGIEATQLAFSEQPDLILLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +T ++KPF R+L+ V +
Sbjct: 61 GMDVCREVRAKL-ETPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTRELLARVKAQMRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|170076771|ref|YP_001733409.1| OmpR family two-component response regulator [Synechococcus sp. PCC
7002]
gi|169884440|gb|ACA98153.1| two-component system response regulator, OmpR family [Synechococcus
sp. PCC 7002]
Length = 227
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++R L + L + G+ V G + ++ + LL+ D ++P+ G+E
Sbjct: 2 RILLVDDERELRGALSQVLQREGHTVALAETGQQGLELACDQEYDLLILDWMLPQYSGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R L ++F+T V L KPF LR+L+ V LL
Sbjct: 62 ICQRVRSLGRTTPILFLTAKDTVDDRVSGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|331266318|ref|YP_004325948.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
Uo5]
gi|326682990|emb|CBZ00607.1| DNA-binding response regulator, OmpR family [Streptococcus oralis
Uo5]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKAIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|293365512|ref|ZP_06612221.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
gi|307703470|ref|ZP_07640412.1| response regulator [Streptococcus oralis ATCC 35037]
gi|291315880|gb|EFE56324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
gi|307622877|gb|EFO01872.1| response regulator [Streptococcus oralis ATCC 35037]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKAIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|228983852|ref|ZP_04144047.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775901|gb|EEM24272.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 235
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|138893859|ref|YP_001124312.1| response regulator [Geobacillus thermodenitrificans NG80-2]
gi|196250567|ref|ZP_03149257.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134265372|gb|ABO65567.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Geobacillus thermodenitrificans
NG80-2]
gi|196209916|gb|EDY04685.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 228
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +D++ + F+ L + G+E+V+ G A K +E SL++ D ++PEM
Sbjct: 1 MPHTLLLVDDEERVLEFMEPFLRQEGFEIVTAKTGKEALQKAKETNPSLVVLDWMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + + ++ +T ++KPF LR+L + +L
Sbjct: 61 GIDVCRELRK-TSHVGIIMVTAKTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119
>gi|89901514|ref|YP_523985.1| Fis family two component sigma-54 specific transcriptional
regulator [Rhodoferax ferrireducens T118]
gi|89346251|gb|ABD70454.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodoferax ferrireducens T118]
Length = 474
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 64/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D++ + R ++ L Y V S G A KV E + +L+ D++MP+MD
Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E P++ V+ +TG + + + LSKPF +L VNR L
Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRALER 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|300864888|ref|ZP_07109734.1| response regulator receiver domain-containing protein [Oscillatoria
sp. PCC 6506]
gi|300337112|emb|CBN54884.1| response regulator receiver domain-containing protein [Oscillatoria
sp. PCC 6506]
Length = 128
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ +R L L K GYEV++ +G SA + ++ ++L D+++PE+ G+E+
Sbjct: 4 ILLVDDEPALRDSLTYTLQKEGYEVMTAADGLSAIKQFHKQVPDVILLDLMLPEVSGMEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R ++ ++ +T ++KPF+ R+LV + +L ++
Sbjct: 64 CWRIRA-FSNVPIVMLTAKDQDIDKVWGLEAGADDYVTKPFNTRELVARIKAVLRRRS 120
>gi|289166996|ref|YP_003445263.1| response regulator [Streptococcus mitis B6]
gi|288906561|emb|CBJ21394.1| response regulator [Streptococcus mitis B6]
Length = 232
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|220913188|ref|YP_002488497.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
gi|219860066|gb|ACL40408.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 224
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+E V C +GA A D R L+L D+++P +D
Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGAQALDIFRSSRPDLVLLDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R+ D+ ++ +T A + + KPF +LV V L
Sbjct: 61 GIEVCRQVRAE-SDVPIVMLTAKADTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 118
>gi|50086362|ref|YP_047872.1| osmolarity response regulator [Acinetobacter sp. ADP1]
gi|49532338|emb|CAG70050.1| two-component response regulator [Acinetobacter sp. ADP1]
Length = 254
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|326389795|ref|ZP_08211359.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|325994063|gb|EGD52491.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 230
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + RFL GY V +G S + E + L+L DI++P +D
Sbjct: 2 MKEKILIIEDEKHIARFLQLEFEHEGYTVTVTYDGLSGLKEALEGDYDLVLLDIMLPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ V+ +T V + ++KPF + +L V L
Sbjct: 62 GFEVLKKIRE-HSDIPVIMLTAKYEVKDKVEGLDIGADDYVTKPFSIEELFARVRAALRK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|317130194|ref|YP_004096476.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315475142|gb|ADU31745.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 231
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MNQ +L+ EDD ++ L L K GY V ++G + ++ DI++P+
Sbjct: 1 MNQPINVLVIEDDPNICDLLKLYLEKEGYAVTIAHDGEKGLIDYYDHQPDFIVLDIMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ R + D ++ V+ ITG + KPF ++++ + ++
Sbjct: 61 IDGWEVCREIRK-DRNVPVIMITGKGESYDKIKGLELGADDYVVKPFDPKEVLARMKAVM 119
Query: 119 TIKN 122
N
Sbjct: 120 RRTN 123
>gi|331086756|ref|ZP_08335833.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409922|gb|EGG89357.1| hypothetical protein HMPREF0987_02136 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 233
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDNYSPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|302384795|ref|YP_003820617.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302195423|gb|ADL02994.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 236
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD ++ + L K YE +G A E L+L D+++P MDG
Sbjct: 4 KQRILIVDDDSNIAELISLYLLKECYETEIVGDGEEALRVFPEFRPHLVLLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREMRSA-SQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|170727789|ref|YP_001761815.1| two component transcriptional regulator [Shewanella woodyi ATCC
51908]
gi|169813136|gb|ACA87720.1| two component transcriptional regulator, winged helix family
[Shewanella woodyi ATCC 51908]
Length = 229
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + G+ + + SA D + E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVLEQHGFVTSAAEDFDSALDLLTEPYPDLVLLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + ++
Sbjct: 61 GIQLAKRMRQDEFTRQIPIIMLTARGEEEDKVRGLEVGADDYMTKPFSPKELVARIKAVI 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSS 124
>gi|163847395|ref|YP_001635439.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525241|ref|YP_002569712.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163668684|gb|ABY35050.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449120|gb|ACM53386.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 226
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD R L +AGY V ++ ++ + + L+L D++MP++D
Sbjct: 1 MN--ILVVDDDIPSARMTSYLLEEAGYRVFRAHDASNILQLIEQHNPDLILLDVMMPKID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + D+ ++F++ + L KPF +L+ V +L
Sbjct: 59 GFEVCRQIR-RNSDIPIIFLSARHQLQDRVMGLQIGGDDYLVKPFEPSELLARVEAVLRR 117
Query: 121 KN 122
+N
Sbjct: 118 RN 119
>gi|145592903|ref|YP_001157200.1| two component transcriptional regulator [Salinispora tropica
CNB-440]
gi|145302240|gb|ABP52822.1| two component transcriptional regulator, winged helix family
[Salinispora tropica CNB-440]
Length = 227
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED++ L L K G+EV G SA + ++L D+++PEM
Sbjct: 1 MS-RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ +T + ++KP+ R+LV + +L
Sbjct: 60 GSEVCRQLRQR-SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 118
Query: 121 KN 122
K+
Sbjct: 119 KS 120
>gi|152975000|ref|YP_001374517.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023752|gb|ABS21522.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 238
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A +K + + L+L DI+MP DGIE
Sbjct: 6 RILVVDDEDRIRRLLKMYLERENYVIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E V+ +T + + KPF R++V V +L
Sbjct: 66 VCKGIREK-KATPVIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 121
>gi|87302949|ref|ZP_01085753.1| two-component response regulator [Synechococcus sp. WH 5701]
gi|87282445|gb|EAQ74404.1| two-component response regulator [Synechococcus sp. WH 5701]
Length = 298
Score = 154 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
I + +DD ++R+ L L GYEV +G ++ + L++ D+++P DG
Sbjct: 61 THTIWVVDDDPELRQLLGTYLTDQGYEVRCLTDGRQLMARLEFQRPDLVVLDLMLPGDDG 120
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L RR + DL V+ +T L+KPF R+L+ + +L +
Sbjct: 121 LTLLRRLRDSSDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFLPRELMARIEAVLRRR 180
>gi|290474714|ref|YP_003467594.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family)
[Xenorhabdus bovienii SS-2004]
gi|289174027|emb|CBJ80814.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family)
[Xenorhabdus bovienii SS-2004]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + A ++ E L+L D ++P
Sbjct: 1 MAKRILVVEDEVQIREMVCLVLEQNGYQTVEAEDYDVAVWRLSEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L ++ D+ VM +T ++KPF ++LV + +L
Sbjct: 61 GIQLIKQMKRDSSTRDIPVMMVTARGEEEDRVRGLDVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229114252|ref|ZP_04243673.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228669272|gb|EEL24693.1| Two-component response regulator [Bacillus cereus Rock1-3]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|314933669|ref|ZP_07841034.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
gi|313653819|gb|EFS17576.1| DNA-binding response regulator SrrA [Staphylococcus caprae C87]
Length = 241
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + +E+ ++G AY + ++ +L D+++PEMD
Sbjct: 1 MANEILIVDDEDRIRRLLKLYLERESFEIHEASDGKEAYQLAMDNNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEVASKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|255525477|ref|ZP_05392414.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296188589|ref|ZP_06856977.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
carboxidivorans P7]
gi|255510842|gb|EET87145.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296046853|gb|EFG86299.1| putative subtilin biosynthesis regulatory protein SpaR [Clostridium
carboxidivorans P7]
Length = 227
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D++D+ FL +L + YEV +G A +K + L+L D++MP +
Sbjct: 1 MKEKILIVDDEEDIISFLKDSLQEDDYEVFVAYSGIEAVEKAKLN-PDLILLDVMMPGKN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R ++ + ++F+T + +SKPF LR L ++ L
Sbjct: 60 GYEVCREIRDI-VNCPIIFLTAKSEEEDLITGLGVGGDDYISKPFSLRQLKARISAHLRR 118
>gi|229089713|ref|ZP_04220974.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228693612|gb|EEL47314.1| Two-component response regulator [Bacillus cereus Rock3-42]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|332827076|gb|EGJ99861.1| hypothetical protein HMPREF9455_03734 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1355
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED++++ + L K Y V++ +NG A D+V++ ++++D++MP MDG+EL
Sbjct: 1108 VLLVEDNEELLTLIGNILSKH-YHVLTASNGVEALDRVKDNDIDIVISDVMMPRMDGLEL 1166
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + V+ +T + + +SKPF L+ L +N LT K
Sbjct: 1167 CRRLKKDIETSHIPVILLTAKNSADDRIECYNAGADGYISKPFELKVLEARINNFLTNK 1225
>gi|309792673|ref|ZP_07687126.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
gi|308225301|gb|EFO79076.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
Length = 256
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++ L L GY V + +GASA ++ L++ DI++P MDG E
Sbjct: 22 TILIVEDEVPIQNVLSSYLRAEGYRVYTAKDGASALSQMWAVRPDLVILDIMLPGMDGFE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D D+ ++F+T + + L+KPF R+L V +L
Sbjct: 82 VCRRI-QQDFDVYILFLTARSEEVDKLIGLSIGADDYLTKPFSPRELTARVKTILRR 137
>gi|126698063|ref|YP_001086960.1| two-component response regulator [Clostridium difficile 630]
gi|115249500|emb|CAJ67315.1| Two-component response regulator [Clostridium difficile]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D++ + L GYEV + +G A K+ + ++L DI MPE+D
Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++F+T + + KPF L +L V+ L
Sbjct: 60 GIEVCNRIRD-YISCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|114569034|ref|YP_755714.1| two component transcriptional regulator [Maricaulis maris MCS10]
gi|114339496|gb|ABI64776.1| two component transcriptional regulator, winged helix family
[Maricaulis maris MCS10]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K GY V +G A + E L++ D ++P++
Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR + ++ ++ +T + KPF + +L + +L
Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|116671258|ref|YP_832191.1| two component transcriptional regulator [Arthrobacter sp. FB24]
gi|116611367|gb|ABK04091.1| two component transcriptional regulator, winged helix family
[Arthrobacter sp. FB24]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+E V C +G A + R L+L D+++P MD
Sbjct: 1 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R+ D ++ +T + + + KPF +LV V L
Sbjct: 61 GIEVCRQIRAE-SDSPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 118
>gi|315646972|ref|ZP_07900086.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277624|gb|EFU40949.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ V +G A P L++ DI+MP MDG
Sbjct: 3 TILVADDDPNIRELVCLFLRNDGFTTVEARDGKEALAVYGSTPVDLVVLDIMMPIMDGWT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +PDL ++ +T L+KPF +L V LL
Sbjct: 63 LCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 119
>gi|301061392|ref|ZP_07202164.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300444516|gb|EFK08509.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D++D+ + L K GY V+S G A + R E L++ D+++P MDG
Sbjct: 3 KERILVVDDEEDILELVNFNLAKEGYRVISTTTGERAVEMSRVERPDLIVLDLMLPGMDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+A+ + ++ ++ +T + ++KPF + L+ + +L
Sbjct: 63 LEVAKFLKKNQETQNIPIVMLTAKGEESDVVTGLELGADDYVTKPFSPKILLARIRAVLR 122
Query: 120 IK 121
K
Sbjct: 123 RK 124
>gi|209516015|ref|ZP_03264875.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209503475|gb|EEA03471.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 241
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|134101789|ref|YP_001107450.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291009773|ref|ZP_06567746.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133914412|emb|CAM04525.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +R +++ L GYEV + +GA A ++ ++ D++MP MDG+
Sbjct: 2 RVLVVEDEPGVRDAVVRGLESEGYEVRAAGDGARALTEITAWRPGAIVLDLLMPFMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ +T AVA D L KPF L +L+ V LL
Sbjct: 62 MCRRLRADGDRTPILVLTARDAVADRIDGLDAGADDYLVKPFDLDELLARVRALLRR 118
>gi|124021896|ref|YP_001016203.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
gi|123962182|gb|ABM76938.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
Length = 290
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ + R L+ L AGY V+ +G A + E LL+ D+++P +DG
Sbjct: 25 KATILVVDDEPAVLRILVMRLQLAGYRVICAEDGEEALEIFHREQPDLLVLDVMLPRLDG 84
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ + KPF ++L + +L
Sbjct: 85 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYIPKPFSPKELEARIATILRR 142
>gi|255320247|ref|ZP_05361432.1| protein PetR [Acinetobacter radioresistens SK82]
gi|262380462|ref|ZP_06073616.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
gi|255302686|gb|EET81918.1| protein PetR [Acinetobacter radioresistens SK82]
gi|262297908|gb|EEY85823.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
Length = 254
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D+ ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDIPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|158334650|ref|YP_001515822.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158304891|gb|ABW26508.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + +F+ L GY+V N+G RE L+L D ++P
Sbjct: 1 MTAHILLVEDETKLAQFVEMELTHEGYQVTVANDGIGGLTAARESQPDLILLDWMLPGFS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T ++ + + KPF + +L+ V L
Sbjct: 61 GVEVCRRLRATGDKVPVILLTAKDEISDRVEGLDAGADDYMVKPFSIEELLARVRAHLRR 120
>gi|196041826|ref|ZP_03109115.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196027320|gb|EDX65938.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|154498462|ref|ZP_02036840.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
29799]
gi|150272530|gb|EDM99715.1| hypothetical protein BACCAP_02451 [Bacteroides capillosus ATCC
29799]
Length = 238
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + + L GY+V + +G A + R F L++ D++MP++DG++
Sbjct: 13 KILVVDDEKVLVKGIKFNLESEGYQVETGCDGEEAVELARSGGFDLIILDLMMPKIDGLQ 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E ++ ++ +T + A ++KPF++ +L V LL
Sbjct: 73 ACMRIRE-FSNVPIIMLTARSEDADKIIGFECGADDYITKPFNILELKARVRALLRR 128
>gi|226304476|ref|YP_002764434.1| two-component response regulator PhoP [Rhodococcus erythropolis
PR4]
gi|226183591|dbj|BAH31695.1| two-component response regulator PhoP [Rhodococcus erythropolis
PR4]
Length = 243
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + L +L G+EV + ++GA D R ++ D++MP MDG
Sbjct: 17 RILVVDDEPTIVELLSVSLRFQGFEVATASSGAQGLDVARTFRPDAIVLDVMMPGMDGFG 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D V+F+T ++ ++KPF L ++V + +L
Sbjct: 77 LLRRLRADGVDAPVLFLTAKDSLDDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 133
>gi|74310968|ref|YP_309387.1| transcriptional regulator PhoB [Shigella sonnei Ss046]
gi|73854445|gb|AAZ87152.1| positive response regulator for pho regulon [Shigella sonnei Ss046]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + A +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDCAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|88856681|ref|ZP_01131337.1| putative two-component system response regulator [marine
actinobacterium PHSC20C1]
gi|88814142|gb|EAR24008.1| putative two-component system response regulator [marine
actinobacterium PHSC20C1]
Length = 266
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD + L AG+ V + +G A D L++ D ++P +DG
Sbjct: 39 DRRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDG 98
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR D+ ++ +T + +SKPF R+LV V +L
Sbjct: 99 SEVCRRIRSRG-DVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRR 156
>gi|238061271|ref|ZP_04605980.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
gi|237883082|gb|EEP71910.1| winged helix family two-component system transcriptional regulator
[Micromonospora sp. ATCC 39149]
Length = 227
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED++ L L K G+EV G SA + ++L D+++PEM
Sbjct: 1 MS-RVLVVEDEESFSDALSYMLRKEGFEVSVAATGPSALTEFDRTGADIVLLDLMLPEMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ +T + ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQLRQR-SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 QS 120
>gi|298492569|ref|YP_003722746.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
gi|298234487|gb|ADI65623.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
Length = 383
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L L + GYEV N+GA A V E ++L DI MP M+G E+
Sbjct: 13 ILIVDDTPNNLHLLSSMLEEQGYEVRCANSGAIALRAVEMEHPDIILLDINMPNMNGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R D+ V+F++ + + ++KPF L +++ + ++++
Sbjct: 73 CERLKLDPRTRDIPVIFLSALSETIDKVKAFRIGGIDYITKPFQLEEVLARLENHISLR 131
>gi|190565563|ref|ZP_03018483.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
gi|190563590|gb|EDV17555.1| sensor histidine kinase [Bacillus anthracis Tsiankovskii-I]
Length = 511
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|295090183|emb|CBK76290.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L G++V N A A+ ++ E L + D+++P+M+
Sbjct: 1 MQDKILIVDDEQEIADLVSLYLTNEGFQVFKFYNAADAWSCIQTENLDLAILDVMLPDMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ E V+ +T ++KPF ++V V L
Sbjct: 61 GFELCQKIREKY-QYPVIMLTAKGEGIDKITGLTLGADDYITKPFLPLEMVARVKAQLRR 119
>gi|289432837|ref|YP_003462710.1| transcriptional regulator [Dehalococcoides sp. GT]
gi|288946557|gb|ADC74254.1| two component transcriptional regulator, winged helix family
[Dehalococcoides sp. GT]
Length = 227
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D+ + L L + G+ V++ +G +A K EE L++ D+++PE+
Sbjct: 1 MSKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + ++ +T + ++KPF ++LV V L
Sbjct: 61 GWDVCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRR 119
>gi|239995632|ref|ZP_04716156.1| osmolarity response regulator [Alteromonas macleodii ATCC 27126]
Length = 240
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + D+ ++ +T L KPF+ R+L+ +L ++
Sbjct: 67 ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125
>gi|258514654|ref|YP_003190876.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778359|gb|ACV62253.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD + L + L GY V + N+G + + F L++ D++MP +D
Sbjct: 1 MSSNILVIDDDPRITALLKRTLLFNGYTVEAANDGKAGITLLENNHFDLVILDVMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E DL V+ +T V L KPF + +L+ + LL
Sbjct: 61 GWQVCGQIREYY-DLPVLMLTARDEVEDRVKGLDLGADDYLVKPFAMTELLARIRALLRR 119
>gi|126733777|ref|ZP_01749524.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
gi|126716643|gb|EBA13507.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
Length = 226
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + L +AG+ V +G +A +K L++ DI MPEMDG+E+
Sbjct: 2 ILVADDDAQIRDVVRIGLTQAGFGVAEAGDGRAALEKAESLRPDLIILDIGMPEMDGLEV 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + D+ ++F+T A +SKPF R+LV V +L N
Sbjct: 62 CRALRK-TSDVPILFLTARADEIDRVVGLELGADDYVSKPFSPRELVARVRAILKRSN 118
>gi|116617701|ref|YP_818072.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096548|gb|ABJ61699.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L L + GYEV ++G SAY K +E+ F+ +L D+++PEMD
Sbjct: 1 MT-KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF R++V + +L
Sbjct: 60 GMTVLKQLRQDKVSTPIILVTAKGDEFDRVLGLELGADDYITKPFSPREVVARLKAVLRR 119
>gi|226364243|ref|YP_002782025.1| two-component response regulator PhoP [Rhodococcus opacus B4]
gi|226242732|dbj|BAH53080.1| two-component response regulator PhoP [Rhodococcus opacus B4]
Length = 240
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + + GA D R ++ D++MP MDG
Sbjct: 14 RVLVVDDEPNILELLSVSLRFQGFEVATASTGAEGLDTARTFRPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R D V+F+T AV ++KPF L ++V + +L
Sbjct: 74 LLKRLRADGVDAPVLFLTAKDAVEDKISGLTLGADDYVTKPFSLEEVVTRLRVILRR 130
>gi|170691903|ref|ZP_02883067.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170143187|gb|EDT11351.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 241
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|332296828|ref|YP_004438750.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
gi|332179931|gb|AEE15619.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
Length = 248
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L K G+ VV+ NG A R E L++ D+++P+M G +
Sbjct: 2 KILVVDDEMPILELVSYNLQKEGFSVVTAENGTKALQIARSEHPDLIILDLMLPDMSGFD 61
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ T ++KPF + LV V +L
Sbjct: 62 ICRILRNDKTTAVIPIVMATAKTEDTDVVSGLELGADDYVTKPFSPKVLVARVKNILRR 120
>gi|255099609|ref|ZP_05328586.1| two-component response regulator [Clostridium difficile QCD-63q42]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D++ + L GYEV + +G A K+ + ++L DI MPE+D
Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++F+T + + KPF L +L V+ L
Sbjct: 60 GIEVCNRIRD-YVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|307152445|ref|YP_003887829.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306982673|gb|ADN14554.1| PAS/PAC sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1566
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + L YEV + ++G + + + E L+LTD++MP +DG E
Sbjct: 397 RILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARELPDLVLTDVMMPGLDGFE 455
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ ++ A + L KPF R+L+ V L +
Sbjct: 456 LLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFSARELLARVETHLKM 514
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D R FL L +AG +VV+ + A + +LL DI MPE+DG L
Sbjct: 1447 ILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEIDGYML 1506
Query: 65 ARRAT---ELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
++ + + + +T +A + + +SKP +L+
Sbjct: 1507 IKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELL 1558
>gi|311746326|ref|ZP_07720111.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Algoriphagus sp. PR1]
gi|311302500|gb|EAZ80840.2| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Algoriphagus sp. PR1]
Length = 234
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+L+ EDD ++ + L GY++ CN+G ++ PF L++ DI++PEM
Sbjct: 1 MKMKKVLVVEDDPNISHLIQIHLNDLGYQIQVCNHGREGFEIANSNPFDLIILDIMLPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + ++ LD ++ IT + ++KPF +R+ + V ++
Sbjct: 61 DGIAICQKLRALDNFTPILMITAKSEEIDKVIGLESGADDYITKPFKIREFIARVKAIMR 120
Query: 120 IKN 122
++
Sbjct: 121 RQD 123
>gi|229028450|ref|ZP_04184572.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228732899|gb|EEL83759.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|229154353|ref|ZP_04282473.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228629177|gb|EEK85884.1| Two-component response regulator [Bacillus cereus ATCC 4342]
Length = 242
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|229545685|ref|ZP_04434410.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TX1322]
gi|256619196|ref|ZP_05476042.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
4200]
gi|256853258|ref|ZP_05558628.1| response regulator [Enterococcus faecalis T8]
gi|257422480|ref|ZP_05599470.1| two component system response regulator [Enterococcus faecalis X98]
gi|300861021|ref|ZP_07107108.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TUSoD Ef11]
gi|307275837|ref|ZP_07556976.1| response regulator receiver domain protein [Enterococcus faecalis
TX2134]
gi|307291860|ref|ZP_07571731.1| response regulator receiver domain protein [Enterococcus faecalis
TX0411]
gi|229309135|gb|EEN75122.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TX1322]
gi|256598723|gb|EEU17899.1| transcriptional regulatory protein [Enterococcus faecalis ATCC
4200]
gi|256711717|gb|EEU26755.1| response regulator [Enterococcus faecalis T8]
gi|257164304|gb|EEU94264.1| two component system response regulator [Enterococcus faecalis X98]
gi|300850060|gb|EFK77810.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TUSoD Ef11]
gi|306497126|gb|EFM66672.1| response regulator receiver domain protein [Enterococcus faecalis
TX0411]
gi|306507529|gb|EFM76660.1| response regulator receiver domain protein [Enterococcus faecalis
TX2134]
gi|315029565|gb|EFT41497.1| response regulator receiver domain protein [Enterococcus faecalis
TX4000]
gi|315032037|gb|EFT43969.1| response regulator receiver domain protein [Enterococcus faecalis
TX0017]
gi|315156147|gb|EFU00164.1| response regulator receiver domain protein [Enterococcus faecalis
TX0043]
Length = 236
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY+V + NG + ++ + ++ D+++P MDG+
Sbjct: 2 KKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + D ++ +T L+KPF R+++ + +
Sbjct: 62 EITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|219683667|ref|YP_002470050.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
gi|219621317|gb|ACL29474.1| response regulator [Bifidobacterium animalis subsp. lactis AD011]
Length = 245
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AGYEV + +G+ A + + +++ D+++
Sbjct: 1 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|89896744|ref|YP_520231.1| hypothetical protein DSY3998 [Desulfitobacterium hafniense Y51]
gi|89336192|dbj|BAE85787.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L L + G+ V + NG A +E + L+L D+++P + G E
Sbjct: 2 RILLVDDEKNISNVLKAYLQQEGFHVTTAVNGLVALTLFKENSYDLVLLDLMLPGLSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+ +T + + KPF R++V + +L +
Sbjct: 62 ICREIRKI-SATPVIMLTAKVELEDRLQGLNLGADDYIGKPFSPREVVARIKAVLRRTH 119
>gi|331701703|ref|YP_004398662.1| winged helix family two component transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329129046|gb|AEB73599.1| two component transcriptional regulator, winged helix family
[Lactobacillus buchneri NRRL B-30929]
Length = 241
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L +A +EV S NG A F ++L D+++P+M G
Sbjct: 2 KKVLVVDDEPAIVTLLEYNLKQANFEVQSATNGVDALSMAENGQFDIVLLDLMLPQMSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ D V+ +T + KPF R+++ +N +L
Sbjct: 62 QVLKQLRMDRNDTPVILLTAKDTEFDKVFGLEMGADDYIPKPFSPREVIARINAVLRR 119
>gi|300856126|ref|YP_003781110.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300436241|gb|ADK16008.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D+ ++ + L + K G+ V+ +G A K L+L DI+MP MD
Sbjct: 1 MDKNILIADDNIEIIKILKPYIEKEGFTVIFALDGEEALLKFNHYNPQLILLDIMMPLMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + E + ++ IT + A + KPF ++V + +L
Sbjct: 61 GIEVCNKIREK-SNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAVLRR 119
>gi|296166498|ref|ZP_06848929.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898110|gb|EFG77685.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRAREARPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 VLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|295113087|emb|CBL31724.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Enterococcus sp. 7L76]
Length = 236
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY+V + NG + ++ + ++ D+++P MDG+
Sbjct: 2 KKVLVVDDEPSILTLLTFNLEKEGYQVTTSENGKNGFELALSNQYDFIILDVMLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + D ++ +T L+KPF R+++ + +
Sbjct: 62 EITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|291457143|ref|ZP_06596533.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
20213]
gi|291380978|gb|EFE88496.1| DNA-binding response regulator RegX3 [Bifidobacterium breve DSM
20213]
Length = 234
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ + ++
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARIRAVMRR 118
>gi|212639803|ref|YP_002316323.1| OmpR family transcriptional regulator (REC-wHTH) [Anoxybacillus
flavithermus WK1]
gi|212561283|gb|ACJ34338.1| Transcriptional regulator OmpR family (REC-wHTH) [Anoxybacillus
flavithermus WK1]
Length = 223
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ +MR L L G+ + ++G + + + L+L DI+MP++DG
Sbjct: 3 TILIVDDEKEMRELLRLYLEPEGFTCIEADDGEAGLAEFGRKQIDLILLDIMMPKLDGYR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++F+T + + KPF ++V V+ +L
Sbjct: 63 FCMHVRER-SQVPIIFLTARSDEWDRVYGLQIGADDYIVKPFSPNEVVARVHAVLRR 118
>gi|148241212|ref|YP_001226369.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147849522|emb|CAK27016.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 257
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L L +GY VV +G A + E L++ D++MP++DG
Sbjct: 12 TATLLVVDDEPAVRRVLSMRLQLSGYRVVCAEDGEQALELFASEQPDLVVLDVMMPKLDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A+A LSKPF ++L ++R+L
Sbjct: 72 FAVCRRLRAE-SAVPIVFLSSLDAIAEKVAGLDLGADDYLSKPFSPKELEARISRILGR 129
>gi|50956446|gb|AAT90753.1| response regulator [Bifidobacterium animalis subsp. lactis]
Length = 245
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AGYEV + +G+ A + + +++ D+++
Sbjct: 1 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|282863427|ref|ZP_06272486.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282561762|gb|EFB67305.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 246
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA A R+ ++ D+++P+MDG+
Sbjct: 22 RVLIVDDEAPLAELLSMALRYEGWEVRSAGDGAEALRAARDFRPDAVILDVMLPDMDGLT 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 82 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138
>gi|260774751|ref|ZP_05883654.1| two-component system response regulator OmpR [Vibrio
coralliilyticus ATCC BAA-450]
gi|260609313|gb|EEX35465.1| two-component system response regulator OmpR [Vibrio
coralliilyticus ATCC BAA-450]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|218901847|ref|YP_002449681.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|218539651|gb|ACK92049.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|311695852|gb|ADP98725.1| two component transcriptional regulator, winged helix family
[marine bacterium HP15]
Length = 246
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN++ +L+ +DD +R L + L + GY+V + +G +++ L++ D+++P
Sbjct: 9 MNERKASVLVVDDDAAIRELLEEHLTRVGYDVRTAGDGDQMRERLNSSHVDLIVLDVMLP 68
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG L R+ E + ++ +T + L+KPF R+L V L
Sbjct: 69 GDDGFTLCRQIRE-YSRVPIIMLTASSDETDRVVGLELGADDYLAKPFSARELQARVKAL 127
Query: 118 LTI 120
L
Sbjct: 128 LRR 130
>gi|229101412|ref|ZP_04232155.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228681988|gb|EEL36122.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V ++G A + F +L DI+MP+MDG +
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCASSGEEAILHIENRNFKFVLLDIMMPKMDGWDT 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|229010082|ref|ZP_04167296.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229056424|ref|ZP_04195837.1| Two-component response regulator [Bacillus cereus AH603]
gi|229131595|ref|ZP_04260477.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228651821|gb|EEL07776.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228720898|gb|EEL72447.1| Two-component response regulator [Bacillus cereus AH603]
gi|228751215|gb|EEM01027.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|224823455|ref|ZP_03696564.1| two component transcriptional regulator PhoB, winged helix family
[Lutiella nitroferrum 2002]
gi|224603910|gb|EEG10084.1| two component transcriptional regulator PhoB, winged helix family
[Lutiella nitroferrum 2002]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ ++ + L +AG+ V+ + +A V+ L+L D ++P
Sbjct: 1 MPANILLVEDEPAIQELIAFNLTQAGHHVLRASTAEAALMLVKNALPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A+R E + ++ +T + ++KPF R+L+ + +L
Sbjct: 61 GIDIAKRLRADERTRQVPIIMLTARSDEQDKIVGLETGADDYITKPFSPRELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|73748088|ref|YP_307327.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
gi|289432114|ref|YP_003461987.1| transcriptional regulator [Dehalococcoides sp. GT]
gi|73659804|emb|CAI82411.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
gi|288945834|gb|ADC73531.1| two component transcriptional regulator, winged helix family
[Dehalococcoides sp. GT]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD +R L L K GY++ +G A R +L++ D+++P +DG
Sbjct: 4 HKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + ++ +T ++ A + LSKPF +++L+ + LL
Sbjct: 64 ELCRLIRAE-SSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMKALLRR 120
>gi|300725194|ref|YP_003714522.1| response regulator in two-component regulatory system with EnvZ
[Xenorhabdus nematophila ATCC 19061]
gi|297631739|emb|CBJ92458.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Xenorhabdus nematophila ATCC 19061]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLSEQGFQVRSAANAEQMDRLLTRESIQLIILDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ I+ LSKPF+ R+L+ + +L +
Sbjct: 64 LSVCRRLRSQNNAIPIIMISAKGEEVDRIVGLEIGADDYLSKPFNPRELLARMRAVLRRQ 123
>gi|260776661|ref|ZP_05885556.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
coralliilyticus ATCC BAA-450]
gi|260607884|gb|EEX34149.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
coralliilyticus ATCC BAA-450]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|90023343|ref|YP_529170.1| two component transcriptional regulator [Saccharophagus degradans
2-40]
gi|89952943|gb|ABD82958.1| two component transcriptional regulator, winged helix family
[Saccharophagus degradans 2-40]
Length = 232
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL ED D+ + L Y V C++GA + F L++ DI++P MD
Sbjct: 1 MQKRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + ++ +T + + L+KPF +R+L V L
Sbjct: 61 GLQVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRR 120
>gi|46908754|ref|YP_015143.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|254854409|ref|ZP_05243757.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|300766082|ref|ZP_07076050.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
gi|46882026|gb|AAT05320.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|258607809|gb|EEW20417.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|300513228|gb|EFK40307.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ N+G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFRVLEANDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ D+ V+ +T A+A ++KPF +L+ + LL
Sbjct: 60 GFELCKKMRTSYTDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELIFRIRALLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|28896928|ref|NP_796533.1| osmolarity response regulator [Vibrio parahaemolyticus RIMD
2210633]
gi|153837894|ref|ZP_01990561.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
gi|260365885|ref|ZP_05778379.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
gi|260877828|ref|ZP_05890183.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
gi|260895523|ref|ZP_05904019.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
gi|260902547|ref|ZP_05910942.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
gi|28805136|dbj|BAC58417.1| transcriptional regulator OmpR [Vibrio parahaemolyticus RIMD
2210633]
gi|149748757|gb|EDM59602.1| osmolarity response regulator [Vibrio parahaemolyticus AQ3810]
gi|308088470|gb|EFO38165.1| DNA-binding response regulator [Vibrio parahaemolyticus Peru-466]
gi|308090000|gb|EFO39695.1| DNA-binding response regulator [Vibrio parahaemolyticus AN-5034]
gi|308109666|gb|EFO47206.1| DNA-binding response regulator [Vibrio parahaemolyticus AQ4037]
gi|308113446|gb|EFO50986.1| DNA-binding response regulator [Vibrio parahaemolyticus K5030]
gi|328471703|gb|EGF42580.1| osmolarity response regulator [Vibrio parahaemolyticus 10329]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|88808215|ref|ZP_01123726.1| two-component response regulator [Synechococcus sp. WH 7805]
gi|88788254|gb|EAR19410.1| two-component response regulator [Synechococcus sp. WH 7805]
Length = 277
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L AGY VV +G A + E L++ D+++P++DG
Sbjct: 31 KATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALELFHRESPDLVVLDVMLPKLDG 90
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 91 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 148
>gi|150390092|ref|YP_001320141.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949954|gb|ABR48482.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ + + L +L + GYE++S ++G A DK + F L++ D+++P++D
Sbjct: 1 MVYKLLVVDDEPLLVKGLRYSLEQDGYEILSASDGEEALDKFNKGSFDLIILDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ +T ++KPF++ +L + +L
Sbjct: 61 GLEVCQTIRQ-TSQTPIIMLTAKGEDMTKILGLEYGADDYMTKPFNILELKARIKAVLRR 119
>gi|326791036|ref|YP_004308857.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326541800|gb|ADZ83659.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 226
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L K GYE G A + L+L D+++PE+DG +
Sbjct: 3 KILIVDDDTNISELIALYLNKEGYETKEVATGRLALEVFESFYPDLVLLDVMLPELDGYD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T V + KPF ++L+ V +L
Sbjct: 63 VCKEIRKQHR-TPIIMLTAKGEVFDKVLGLELGADDYMVKPFDPKELIARVKAVLRR 118
>gi|255657556|ref|ZP_05402965.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296452769|ref|ZP_06894458.1| response regulator [Clostridium difficile NAP08]
gi|296879979|ref|ZP_06903949.1| response regulator [Clostridium difficile NAP07]
gi|296258388|gb|EFH05294.1| response regulator [Clostridium difficile NAP08]
gi|296428956|gb|EFH14833.1| response regulator [Clostridium difficile NAP07]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ ++R + L +GY V+ +G A D +++E L++ DI+MP+MD
Sbjct: 1 MKNTILVVDDEKEIRDLIEIYLLNSGYNVIKAEDGKEALDILKKENIHLMVLDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R+ E ++ ++ ++ + L+KPF+ +L V L+
Sbjct: 61 GIEVCRKVRESL-NIPILMLSAKSEDMDKIQGIMTGADDYLTKPFNPLELTVRVKSLIRR 119
>gi|225351103|ref|ZP_03742126.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158559|gb|EEG71801.1| hypothetical protein BIFPSEUDO_02689 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 234
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ V +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRR 118
>gi|15643165|ref|NP_228209.1| response regulator [Thermotoga maritima MSB8]
gi|4980903|gb|AAD35484.1|AE001719_10 response regulator [Thermotoga maritima MSB8]
Length = 225
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T + V L KPF LR+L+ V L+
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|228925839|ref|ZP_04088923.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228944403|ref|ZP_04106776.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228815305|gb|EEM61553.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228833854|gb|EEM79407.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 242
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|229055112|ref|ZP_04195541.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
gi|228721234|gb|EEL72761.1| hypothetical protein bcere0026_2470 [Bacillus cereus AH603]
Length = 237
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L + L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRDLLKRYLERELYMVDTAVNGEEALCLFNQNNYNLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDTT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|229046887|ref|ZP_04192519.1| Two-component response regulator [Bacillus cereus AH676]
gi|229113338|ref|ZP_04242797.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228670102|gb|EEL25486.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228724432|gb|EEL75757.1| Two-component response regulator [Bacillus cereus AH676]
Length = 233
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++R + L G + + A + E+ F L++ DI+MP MD
Sbjct: 6 MESKILIVDDDKEIRNLISVYLENEGLKTQKVEDAIQALQLLEEKEFDLIILDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E D ++ ++ ++ + A LSKPF+ +L+ V L
Sbjct: 66 GIEACMKIRE-DRNMPIIMLSAKSEDIDKIQGLASGADDYLSKPFNPLELIARVKSQLRR 124
>gi|251796377|ref|YP_003011108.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247544003|gb|ACT01022.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 238
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +RR L L K GY + +G +A ++L+L D+++P +DG+E
Sbjct: 7 RILVVDDEERIRRLLKMYLEKEGYLIDEAEDGETALRLATVTDYALILLDVMLPGIDGVE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+ +T + KPF R+++ V +L +
Sbjct: 67 VCSRLRQV-KATPVIMLTAKGEEMNRVQGFEVGADDYVVKPFSPREVIYRVKAILRRSS 124
>gi|72160747|ref|YP_288404.1| response regulator receiver [Thermobifida fusca YX]
gi|71914479|gb|AAZ54381.1| response regulator receiver [Thermobifida fusca YX]
Length = 232
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ + +L+A+DD +R L +AL GY+ + +G V +P LL+ D++MP
Sbjct: 1 MSPARTVLIADDDRAIRESLERALQLEGYQTRTAADGVETLAAVHSDPVDLLILDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+ + R ++ +T + L KPF L +L+ + LL
Sbjct: 61 VDGLGVCRVLRAEGDRTPILMLTARVETSDRVAGLDAGADDYLPKPFELDELLARIRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|220935638|ref|YP_002514537.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219996948|gb|ACL73550.1| response regulator receiver protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 216
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + +L+ ED+ +R + AL +AG+EV +G A +++ ++L D ++P
Sbjct: 5 MNAKTVLIVEDEPAIREMVSFALARAGFEVDEAVDGGEAQERIASRLPDMILLDWMLPGT 64
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI+LARR E D+ ++ +T ++KPF R+LV + +
Sbjct: 65 SGIDLARRLKRDEYTRDVPIIMLTARGEEDDRVGGLEAGVDDYVTKPFSPRELVARIKAV 124
Query: 118 LTI 120
+
Sbjct: 125 MRR 127
>gi|86608817|ref|YP_477579.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557359|gb|ABD02316.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 247
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L +G+EV+ N A + L+++DI+MP MDG +
Sbjct: 19 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTAQPQLIISDIMMPGMDGYQ 78
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L+P L V+F+T A L KPF +LV V+ L+
Sbjct: 79 FLAQLRKLEPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 137
>gi|99078311|ref|YP_611569.1| two component transcriptional regulator [Ruegeria sp. TM1040]
gi|99035449|gb|ABF62307.1| two component transcriptional regulator, winged helix family
[Ruegeria sp. TM1040]
Length = 230
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD D+ A+ KAG+E ++G +A R + L++ DI +PE D
Sbjct: 1 MSARILVVDDDPDILEVTRFAIEKAGFETCFASDGLAAIAAQRRDAPDLVVLDIGLPEKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ ++F+T L+KPF R+LV + +L
Sbjct: 61 GLEVCRDIRK-SSDVPILFLTARDEEIDRIVGLELGADDYLTKPFSPRELVARIKAILKR 119
>gi|297625282|ref|YP_003687045.1| two-component response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296921047|emb|CBL55585.1| two-component response regulator [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 231
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59
M +IL+ +DD +R L ++L +GYEV + +G A K+ ++ D++MP +
Sbjct: 1 MAMQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSTNLHPDAVVMDVMMPRL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E + D+ ++ +T AV D + KPF L +L+ + LT
Sbjct: 61 DGLETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRA-LT 119
Query: 120 IKN 122
++
Sbjct: 120 RRS 122
>gi|261344525|ref|ZP_05972169.1| transcriptional regulatory protein OmpR [Providencia rustigianii
DSM 4541]
gi|282567438|gb|EFB72973.1| transcriptional regulatory protein OmpR [Providencia rustigianii
DSM 4541]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 4 SYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|229083561|ref|ZP_04215892.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
gi|228699758|gb|EEL52412.1| hypothetical protein bcere0022_2320 [Bacillus cereus Rock3-44]
Length = 238
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ ++R L K L + Y V +G A + ++L++ D++MP++DGIE
Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYIVDIAVDGEEALHLFEQNKYNLIILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T + ++KPF + +++ + L+
Sbjct: 65 VCRRLRNKT-NIPILMLTAKDQEVDKILGLSIGADDYITKPFSVNEVIARIKALMRR 120
>gi|296141305|ref|YP_003648548.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
gi|296029439|gb|ADG80209.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length = 235
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L +L G++V +G SA D+VR +++ DI+MP MDG+
Sbjct: 11 RVLVVDDEQSIRELLQVSLKFQGFDVTVAQDGPSALDRVRTFHPDVMVLDIMMPGMDGLG 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + D +F+T +V ++KPF L ++V +N LL
Sbjct: 71 LLKRLRQDGIDAPALFLTARDSVEDKVAGLTLGGDDYVTKPFSLEEVVARINVLLRR 127
>gi|255305493|ref|ZP_05349665.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D++ + L GYEV + +G A K+ + ++L DI MPE+D
Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDALKKISKN-PDIILLDINMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++F+T + + KPF L +L V+ L
Sbjct: 60 GIEVCNRIRD-YVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|134298575|ref|YP_001112071.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134051275|gb|ABO49246.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 232
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + L + G++V+ NG A D + E ++L DI++P DG+
Sbjct: 3 KILVVEDEQPIRELIKYNLEREGFQVIQAANGDIALDMAKSEVPDIILLDIMLPGQDGLS 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + ++ ++ ++KPF R+L+ + L +
Sbjct: 63 VCRYLHQDAATRSIPIIMLSARGEELDKVLGLEMGADDYITKPFSPRELIARIKARLRRQ 122
>gi|300721765|ref|YP_003711043.1| response regulator in two-component regulatory system with PhoR
[Xenorhabdus nematophila ATCC 19061]
gi|297628260|emb|CBJ88819.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family)
[Xenorhabdus nematophila ATCC 19061]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + +A ++ E L+L D ++P
Sbjct: 1 MVKRILVVEDEVPIREMVCFVLEQNGYQAIEAEDYDTAIRRLSEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L + + V+ +T A ++KPF ++L+ V +L
Sbjct: 61 GIQLIKHMKRDHNTKTIPVIMVTARAEEEDRVRGLDVGADDYITKPFSPKELIARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|284045956|ref|YP_003396296.1| two component transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283950177|gb|ADB52921.1| two component transcriptional regulator, winged helix family
[Conexibacter woesei DSM 14684]
Length = 231
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ +D+ ++ + AL G+EV S ++GA A +VR+ LLL D+++P+M+G
Sbjct: 6 HRVLVVDDEPNIVDVISMALRYQGFEVASASSGAEALAQVRQFRPHLLLLDVMLPDMEGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ARR + ++F+T A ++KPF L +LV + +L
Sbjct: 66 EVARRLGAERARVPIVFLTARDATDDRVRGLTLGGDDYVTKPFSLEELVARIRTILRR 123
>gi|158334884|ref|YP_001516056.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158305125|gb|ABW26742.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 241
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 6/125 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIV 55
M+Q ILL +D+ ++ L + L + GY V N+G +A V++ + + LL+ D +
Sbjct: 1 MSQ-ILLVDDEVELTDALGRLLKREGYSVDVANDGEAALLAVQQKIDQGQLYDLLILDWM 59
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P++ GIE+ + V+F+T + L KPF LR+L+ V
Sbjct: 60 LPKLSGIEVCQELRSQSQLTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVR 119
Query: 116 RLLTI 120
LL
Sbjct: 120 ALLRR 124
>gi|326693100|ref|ZP_08230105.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
Length = 235
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+VV+ +G A +E L+L D ++PE+D
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYDVVTAADGQEALTMFSDEKPDLVLLDQMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ ++ V+ +T + ++KPF R+LV V L
Sbjct: 60 GVEVLRQIRSK-SEIPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELVARVKANLRS 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|269839879|ref|YP_003324572.1| transcriptional regulator [Thermobaculum terrenum ATCC BAA-798]
gi|269791609|gb|ACZ43749.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 233
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ + + L + GY+V++ NG A + E +++ DI++PE+DG+E
Sbjct: 3 TVLLVEDESTLLTTIAYNLRREGYKVLTAENGKRALELAEEN-PDIVVLDILLPEIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + ++ +T L+KPF +R+L+ + LL ++
Sbjct: 62 VCRRLRQR-SSVPIIMLTAKTDEVDRIVGLELGADDYLTKPFSMRELLARIKALLRRRS 119
>gi|146292399|ref|YP_001182823.1| two component transcriptional regulator [Shewanella putrefaciens
CN-32]
gi|145564089|gb|ABP75024.1| two component transcriptional regulator, winged helix family
[Shewanella putrefaciens CN-32]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + + SA ++E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|113954007|ref|YP_729352.1| two-component response regulator [Synechococcus sp. CC9311]
gi|113881358|gb|ABI46316.1| two-component response regulator [Synechococcus sp. CC9311]
Length = 255
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ +RR L+ L AGY VVS +G A +K E L++ D+++P+MDG
Sbjct: 11 TILVVDDEPAVRRVLLMRLQLAGYNVVSAEDGEEALEKFHSESPDLVVLDVMLPKMDGFA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ +++ L KPF ++L + +L
Sbjct: 71 VCRRLRAE-SCVPIIFLSALESISERVAGLDLGADDYLPKPFSPKELEARIFTILRR 126
>gi|150017794|ref|YP_001310048.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149904259|gb|ABR35092.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 238
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN K IL+ +D+ ++ + L K G++V++ +G SA D E L++ D+++P+
Sbjct: 1 MNNKFKILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M G E+ R + + ++ +T A + + L+KPF +R+LV V LL
Sbjct: 61 MTGEEVCNRIRAV-SSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|332702026|ref|ZP_08422114.1| two component transcriptional regulator, winged helix family
[Desulfovibrio africanus str. Walvis Bay]
gi|332552175|gb|EGJ49219.1| two component transcriptional regulator, winged helix family
[Desulfovibrio africanus str. Walvis Bay]
Length = 227
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ EDD+D+ + + + AGY+ ++ ++G A +K R L+L D+++P MDG
Sbjct: 3 KETILIVEDDEDILQLIKFNVESAGYDAITASDGLEALNKARRHMPDLILLDLMLPGMDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + + ++ +T + KPF R+++ V +L
Sbjct: 63 FEVCKELKRGSETGRIPILMLTARGEEVDRIVGLELGADDYVVKPFSPREIILRVRAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|225857948|ref|YP_002739458.1| response regulator SaeR [Streptococcus pneumoniae 70585]
gi|225720881|gb|ACO16735.1| response regulator SaeR [Streptococcus pneumoniae 70585]
Length = 232
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLLPEQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|239624161|ref|ZP_04667192.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520547|gb|EEQ60413.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 224
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ DM R + + L K GY V SC++G A + + + DI+MP +G E
Sbjct: 2 RILVAEDERDMNRLITRTLEKEGYGVDSCHDGDEALTYLESADYDAAILDIMMPRRNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R L + V+F+T ++A L KPF +L+ + +LT K
Sbjct: 62 VLKRLRSLGKETPVLFLTARDSIADRVAGLDLGADDYLIKPFDFDELLARIR-VLTRK 118
>gi|251795531|ref|YP_003010262.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247543157|gb|ACT00176.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 239
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ + R L L + GY+ ++GA+ + F L++ DI++P ++
Sbjct: 1 MSHKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T A ++KPF + +L+ V+ +L
Sbjct: 61 GFEILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRR 120
>gi|148379031|ref|YP_001253572.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153932373|ref|YP_001383413.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153935682|ref|YP_001386960.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148288515|emb|CAL82594.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152928417|gb|ABS33917.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152931596|gb|ABS37095.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 233
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +D++ + + L K YEV++ +G A +E F L++ D+++P+
Sbjct: 1 MKKLFKILVVDDEERILDVVKAYLEKEDYEVITAMDGEEAIKLFKEISFHLVILDLMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G E+ + E ++ ++ +T + + L+KPF +R+LV V L+
Sbjct: 61 ISGEEVCSKIRE-FSNVLIIMLTAKVEEEDKLEGLSIGADDYLTKPFSVRELVARVKALI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|118616306|ref|YP_904638.1| two component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium ulcerans Agy99]
gi|118568416|gb|ABL03167.1| two component system response phosphate regulon transcriptional
regulator, PhoP [Mycobacterium ulcerans Agy99]
Length = 240
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++ L +L G+EV + NGA A D+ RE ++ D++MP MDG
Sbjct: 15 RILVVDDEDNIVELLSVSLKFQGFEVHTATNGAQALDRARETRPDAVILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 75 VLRRLQADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|108763038|ref|YP_633464.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
gi|108466918|gb|ABF92103.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
Length = 226
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +DD M L + LG+ G V +G + F +L D++MP MD
Sbjct: 1 MSTRVLLIDDDTRMYELLEQYLGQNGLSVTHAADGGRGLAALEASAFDAVLLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + V+ +T L KPF R+L+ + +L
Sbjct: 61 GLEVCKRIRAK-SRIPVIMLTAKGDETDRVVGLELGADDYLPKPFSPRELLARLRAVLRR 119
>gi|27363935|ref|NP_759463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
vulnificus CMCP6]
gi|37678907|ref|NP_933516.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
gi|320157317|ref|YP_004189696.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Vibrio vulnificus MO6-24/O]
gi|27360052|gb|AAO08990.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
vulnificus CMCP6]
gi|37197648|dbj|BAC93487.1| DNA-binding response regulator PhoB [Vibrio vulnificus YJ016]
gi|319932629|gb|ADV87493.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Vibrio vulnificus MO6-24/O]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A +K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|312888380|ref|ZP_07747956.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311299214|gb|EFQ76307.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 235
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 64/119 (53%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILLAED++ + + L GY+V + NNG A K +EE F+L++ D++MPE+DG
Sbjct: 4 KKRILLAEDEEHLLEAIKLNLELEGYKVSTANNGKKALQKFKEERFNLVILDVMMPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A + ++ +MF+T L+KPF+L +L+ VN L+
Sbjct: 64 FVVAETIRLENSEVPIMFLTAKNTTEDKVAGLKKGADDYLTKPFNLEELILRVNNLVKR 122
>gi|260771433|ref|ZP_05880358.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
furnissii CIP 102972]
gi|260613559|gb|EEX38753.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
furnissii CIP 102972]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A +K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|240146929|ref|ZP_04745530.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
gi|257200912|gb|EEU99196.1| DNA-binding response regulator SrrA [Roseburia intestinalis L1-82]
Length = 234
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ N+G A + +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREVRAK-ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121
>gi|119964678|gb|ABM17107.1| response regulator receiver [Sulfobacillus acidophilus DSM 10332]
Length = 229
Score = 154 bits (392), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 54/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +DD +R L AG++V+ +G +A ++ + P +++ D+++PEMDG ++
Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L V+ +T L KPF R+LV+ V +L
Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRR 116
>gi|292487424|ref|YP_003530296.1| phosphate regulon transcriptional regulatory protein phoB [Erwinia
amylovora CFBP1430]
gi|292898668|ref|YP_003538037.1| phosphate regulon two-component response regulator [Erwinia
amylovora ATCC 49946]
gi|291198516|emb|CBJ45624.1| phosphate regulon two-component response regulator [Erwinia
amylovora ATCC 49946]
gi|291552843|emb|CBA19888.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
amylovora CFBP1430]
gi|312171528|emb|CBX79786.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
amylovora ATCC BAA-2158]
Length = 229
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA + E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDSALSLLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|224368156|ref|YP_002602319.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
HRM2]
gi|223690872|gb|ACN14155.1| transcriptional regulatory protein [Desulfobacterium autotrophicum
HRM2]
Length = 232
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ L +AL + Y + + NG A DK+ E + L+L DI++P MD
Sbjct: 6 MN--ILIVDDDSELLDHLRRALERKHYRIETAENGEKALDKIFEITYDLILLDIMLPLMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + + V+ +T V L+KPF + +L+ + LL
Sbjct: 64 GLSVLKHMRQAGLNTPVLMLTARGDVEDRVKGLDYGADDYLAKPFSMAELMARIRALLRR 123
>gi|295696419|ref|YP_003589657.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
gi|295412021|gb|ADG06513.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
Length = 233
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D++ +RR + L + G+EV +G +A + +++++ D+++PE+
Sbjct: 1 MNPVKILVVDDEERIRRLVRMYLERNGFEVEEAEDGRTALEMALANDYAVIVLDLMLPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + + D V+ +T + KPF R+LV V L+
Sbjct: 61 DGREVCAQLRKQ-KDTPVIMLTAAGDEMNRIHGFELGADDYVVKPFSPRELVMRVKALIK 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|258516072|ref|YP_003192294.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257779777|gb|ACV63671.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 225
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+A+D+ M + + L K G+ V +NG A D E+ L++ D++MPE DG
Sbjct: 5 KKILIADDEPRMLKLVSDFLKKDGHSVFVADNGRQALDIFNEQQLDLVILDVMMPEYDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T A + + ++KPF + LV V LL
Sbjct: 65 AVCREIRK-TSHVPIIMLTARAEESDELFGFELGADEYVTKPFSPKILVARVQALLRR 121
>gi|94499897|ref|ZP_01306433.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
gi|94428098|gb|EAT13072.1| two-component response regulator PhoB [Oceanobacter sp. RED65]
Length = 232
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R + AL AGYE + +N AY + +E ++L D ++P G+
Sbjct: 6 KKILIVDDEASIREMIAVALEMAGYECIEASNTQDAYSLIIDEHPEMILLDWMLPGTSGL 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ARR ++ ++ +T ++KPF R+LV + +L
Sbjct: 66 EFARRLKRDDRTNEVPIIMLTAKGEEDNKVLGLEAGADDYITKPFSPRELVARLKAVLRR 125
>gi|268317350|ref|YP_003291069.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodothermus marinus DSM 4252]
gi|262334884|gb|ACY48681.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodothermus marinus DSM 4252]
Length = 461
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +RR L + L GY V +G A +K+RE + L+L DI MP D
Sbjct: 1 MAATILVVDDERSIRRTLREILEYEGYAVEEAADGDEALEKLREGRYDLVLLDIKMPRRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R P+L V+ I+G + ++ + KP L L+ V L
Sbjct: 61 GMEVLRTLAAEQPELPVVMISGHGTIETAVEATRLGAFDFIEKPPDLNRLLLTVRNALER 120
>gi|153854056|ref|ZP_01995389.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
gi|149753438|gb|EDM63369.1| hypothetical protein DORLON_01380 [Dorea longicatena DSM 13814]
Length = 233
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +
Sbjct: 1 MNKQKILIVDDDENIAELVSLYLTKECFDTMMVHDGERALVAFDTYKPNLILLDLMLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 61 DGYQVCREIR-TRSNTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDAKELVARVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|154249470|ref|YP_001410295.1| two component transcriptional regulator [Fervidobacterium nodosum
Rt17-B1]
gi|154153406|gb|ABS60638.1| two component transcriptional regulator, winged helix family
[Fervidobacterium nodosum Rt17-B1]
Length = 229
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ EDD +RR L L GY VVS +G A ++ + E L++ DI++P+MDG E
Sbjct: 6 KLMVVEDDKKLRRLLEIELEHVGYSVVSFESGLDAIEEFKNENPELVILDIMLPDMDGYE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+A+ +L PD+ ++ +T L+KPF +L+ + LL KN
Sbjct: 66 VAQNLRKLKPDVLILMLTALGMKKDKLAGFEAGADDYLTKPFDNEELLARIKALLRRKN 124
>gi|323704002|ref|ZP_08115625.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323531031|gb|EGB20947.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 230
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L K G+EV ++G A + ++ E + L+L D+++P +DG+
Sbjct: 3 KILIIDDEAKIRDLVKVYLVKEGFEVQELSDGNEAVNLIKAEHYDLVLLDLMLPGVDGLT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + KPF R++V V +L
Sbjct: 63 ICKEIRK-FSQVPVIILTARGDEIDRVIGLEVGADDYIVKPFSPREMVARVKAVLRR 118
>gi|315924541|ref|ZP_07920760.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
23263]
gi|315622071|gb|EFV02033.1| DNA-binding response regulator [Pseudoramibacter alactolyticus ATCC
23263]
Length = 228
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + L GY+V++ +G A K E L++ DI++P+ +
Sbjct: 1 MNEKILVVDDEKAIVDLIKMELTFEGYQVITAFDGEEAVAKSFESYPDLIVLDIMLPKKN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + D ++ +T + L+KPF R+L+ + L
Sbjct: 61 GYDVCKEIQQKL-DTPIILLTAKTDIVDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119
>gi|255523369|ref|ZP_05390339.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296188303|ref|ZP_06856695.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255513023|gb|EET89293.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296047429|gb|EFG86871.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 230
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD D+ + + K+L G+E + +G A + E ++ DI+MP MD
Sbjct: 1 MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGEEALCALEENHIDFIILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+++ R + + ++ ++ ++KPF +++L + +
Sbjct: 61 GLDVCRSIRKSY-NTPILLLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRA 115
>gi|212711645|ref|ZP_03319773.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
30120]
gi|212685747|gb|EEB45275.1| hypothetical protein PROVALCAL_02720 [Providencia alcalifaciens DSM
30120]
Length = 239
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 4 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESIHLIVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|329736115|gb|EGG72388.1| putative transcriptional regulatory protein WalR [Staphylococcus
epidermidis VCU045]
Length = 219
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+++ +D+ + L L K GY+V +G A D + EE ++L DI++P D
Sbjct: 1 MARKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 GMEVCREVRKKY-EMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRR 119
>gi|310828642|ref|YP_003960999.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
gi|308740376|gb|ADO38036.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
Length = 228
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + L GY+V + +G A +K + L++ DI++P+++
Sbjct: 1 MNEKILVVDDEAAIVDLIKMELDFEGYQVETAYDGQEAIEKAQSFEPDLIVLDIMLPKVN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + T + D+ ++ +T + L+KPF R+L+ + L
Sbjct: 61 GYDVCKTLTPMM-DVPIILLTAKTDIIDKVLGLELGADDYLTKPFDNRELLARIKAHLRR 119
>gi|295397798|ref|ZP_06807865.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
gi|294973967|gb|EFG49727.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563]
Length = 358
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L GY+V +G A KV L++ D+++P + G+E
Sbjct: 133 KILIVDDEASILDIVEAYLSAKGYQVFRALSGNEALKKVDIVQPDLIVLDLMLPGLSGLE 192
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ +T A + + ++KPF ++LV V +L
Sbjct: 193 VCKKIRD-SSTVPIIMLTAKTAEKDILEGLSLGADDYITKPFSPKELVARVETVLRR 248
>gi|291537897|emb|CBL11008.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 234
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ N+G A + +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYNPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREVRAK-ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121
>gi|229134011|ref|ZP_04262831.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228649346|gb|EEL05361.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
Length = 228
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEALDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|226315498|ref|YP_002775394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226098448|dbj|BAH46890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 236
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + L K GY+VV +G A V++E L+L D+++P DG++
Sbjct: 3 KLLVVDDEKPIADILKFTFEKEGYQVVCAYDGDEALVVVKDERPDLILLDVMLPGRDGMD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ ++ +T + ++KPF R+LV V L
Sbjct: 63 VCRTVRQTY-DVPIIMLTAKDSELDKVLGLELGADDYVTKPFSTRELVARVKAHLRR 118
>gi|226309917|ref|YP_002769811.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226092865|dbj|BAH41307.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 226
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD +R L L K GY V++C +G A + +E L + D++MP +
Sbjct: 1 MKLTILIADDDPHVRELLRFYLAKEGYNVLACVDGEEASQLLEQESVQLAIVDVMMPGKN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R E DL V+ +T V L+KPF +L+ + LL
Sbjct: 61 GWELCREIREFY-DLPVILLTAKGEVRDKEKGFLAGTDDYLTKPFEPTELLYRIKALLRR 119
>gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
PCC 7001]
gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp.
PCC 7001]
Length = 273
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+ V + N+G ++K +E ++++D++MP DG
Sbjct: 47 RLLLVDDEPGLRTAVKAYLEDEGFAVTTANDGEEGWEKAQELLPDVVISDVMMPCCDGYG 106
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + V+F+T A + KPF +LV V + +
Sbjct: 107 LLRKLRADERLGGTPVIFLTAKGMTADRIAGFQAGCDDYIPKPFDPDELVARVRNAVRRQ 166
>gi|251794533|ref|YP_003009264.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247542159|gb|ACS99177.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 246
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I++A+D+ ++ + L + G+EV NG A +E LL+ D++MP++D
Sbjct: 1 MGANIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + D D ++ +T ++KPF R+LV V+ +L
Sbjct: 61 GLEVCDLIRQTD-DTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRR 119
>gi|156741487|ref|YP_001431616.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156232815|gb|ABU57598.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 231
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +DD + R + L AG++ ++ ++GA+A R E L++ D+++P++D
Sbjct: 1 MPQRILVVDDDRQITRLVSAYLEHAGFQTLTAHDGATALRLARSERPDLMVLDLMLPDID 60
Query: 61 GIELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G +L R DP + ++ +T ++KPF+ R++V V +
Sbjct: 61 GADLTRAIRA-DPHIAAMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|295399015|ref|ZP_06808997.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312110379|ref|YP_003988695.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294978481|gb|EFG54077.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311215480|gb|ADP74084.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 238
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ KIL+ +D++ +RR L L + Y + +NG A K E + ++L D+++P
Sbjct: 1 MDKQVKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALTKALENDYDVILLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ + E ++ +T + + KPF R++V V LL
Sbjct: 61 RDGIEVCKEIREK-KATPIIMLTAKGEESNRVQGFEAGTDDYIVKPFSPREVVLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|167580218|ref|ZP_02373092.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
TXDOH]
gi|167618327|ref|ZP_02386958.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
Bt4]
gi|257139875|ref|ZP_05588137.1| DNA-binding response regulator OmpR [Burkholderia thailandensis
E264]
Length = 241
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|71282474|ref|YP_267951.1| phosphate regulon response regulator PhoB [Colwellia
psychrerythraea 34H]
gi|71148214|gb|AAZ28687.1| phosphate regulon response regulator PhoB [Colwellia
psychrerythraea 34H]
Length = 233
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ ED+ +R + L + G+ + + A K+ E L+L D ++P
Sbjct: 1 MSRKILVVEDETPIREMISFVLDQNGFNAIEACDIEQALAKIHEPYPDLILLDWMLPGGT 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LA++ + ++ ++ +T + ++KPF ++L+ + ++
Sbjct: 61 GVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVKGFEAGVDDFVTKPFSPKELIARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|262375130|ref|ZP_06068364.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
gi|262310143|gb|EEY91272.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
Length = 254
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|237806797|ref|YP_002891237.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
gi|237499058|gb|ACQ91651.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
Length = 240
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R L + L +AG++V++ +G Y ++ L++ DI+MP DG L
Sbjct: 7 ILIVDDDQEIRELLKEYLTRAGFDVLTACDGVEMYQQLALSTPELIILDIMMPGDDGFSL 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ +T + A ++KPF R+L+ + LL
Sbjct: 67 CQQIRRK-SQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELMARIKALLRR 121
>gi|146305399|ref|YP_001185864.1| osmolarity response regulator [Pseudomonas mendocina ymp]
gi|145573600|gb|ABP83132.1| Two-component response regulator OmpR [Pseudomonas mendocina ymp]
Length = 245
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +RR L + + GY V + N + E F+L++ D+++P DG+
Sbjct: 12 EKILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + + ++ +T + L+KPF+ R+L+ + +L +
Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130
>gi|325662837|ref|ZP_08151406.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086560|ref|ZP_08335638.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470889|gb|EGC74118.1| hypothetical protein HMPREF0490_02146 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410393|gb|EGG89825.1| hypothetical protein HMPREF0987_01941 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 229
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV N+G + +K + F L++ D+++P +D
Sbjct: 1 MS-RILIVEDEETIADLERDYLELSGFEVEVANDGETGLEKALTDQFDLVILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICREVRQK-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|289434076|ref|YP_003463948.1| DNA-binding two-component response regulator [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170320|emb|CBH26860.1| DNA-binding two-component response regulator [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313634218|gb|EFS00857.1| heme response regulator HssR [Listeria seeligeri FSL N1-067]
gi|313638846|gb|EFS03909.1| heme response regulator HssR [Listeria seeligeri FSL S4-171]
Length = 225
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD +R+ + L + G+ V+ +G +A V + L + D++MP+MD
Sbjct: 1 MKQ-ILVVDDDKHIRQLVGHYLRREGFAVLEAMDGEAAEQIVTSQQVHLAVIDLMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ P++ V+ +T A+ ++KPF +LV + LL
Sbjct: 60 GFELCQKIRTSYPEIPVIMLTAKDALIDKSRGFEVGTDDYVTKPFEPEELVFRIRALLRR 119
>gi|138895944|ref|YP_001126397.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196248835|ref|ZP_03147535.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134267457|gb|ABO67652.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196211711|gb|EDY06470.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 224
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+++MR + L AG+ + +G A + +L D++MP
Sbjct: 1 MSERTVLIVDDEEEMRLLVSMYLENAGFCCLEAGDGDEALTVLARRSVDAILLDVMMPNQ 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R E D+ ++F+T + KPF +L+ + +L
Sbjct: 61 DGFSVCARIREQ-SDVPILFLTALGEEWDKVKGFKLGGDDYIVKPFSPGELIARLEAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|91794885|ref|YP_564536.1| osmolarity response regulator [Shewanella denitrificans OS217]
gi|91716887|gb|ABE56813.1| two component transcriptional regulator, winged helix family
[Shewanella denitrificans OS217]
Length = 240
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLVEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQNNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|152968913|ref|YP_001334022.1| transcriptional regulator PhoB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206576178|ref|YP_002240146.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella pneumoniae 342]
gi|238893323|ref|YP_002918057.1| transcriptional regulator PhoB [Klebsiella pneumoniae NTUH-K2044]
gi|262042405|ref|ZP_06015566.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288936893|ref|YP_003440952.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|290510051|ref|ZP_06549421.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella sp. 1_1_55]
gi|330006877|ref|ZP_08305751.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella sp. MS 92-3]
gi|1172481|sp|P45605|PHOB_KLEPN RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|149295|gb|AAA25122.1| phosphate regulatory protein phoB [Klebsiella pneumoniae]
gi|150953762|gb|ABR75792.1| positive response regulator for pho regulon, sensor is PhoR (or
CreC) [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|206565236|gb|ACI07012.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella pneumoniae 342]
gi|238545639|dbj|BAH61990.1| positive response regulator for pho regulon [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040237|gb|EEW41347.1| phosphate regulon response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|288891602|gb|ADC59920.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|289776767|gb|EFD84765.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella sp. 1_1_55]
gi|328535683|gb|EGF62130.1| phosphate regulon transcriptional regulatory protein PhoB
[Klebsiella sp. MS 92-3]
Length = 229
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKLLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|113971044|ref|YP_734837.1| two component transcriptional regulator [Shewanella sp. MR-4]
gi|114048269|ref|YP_738819.1| two component transcriptional regulator [Shewanella sp. MR-7]
gi|117921320|ref|YP_870512.1| two component transcriptional regulator [Shewanella sp. ANA-3]
gi|120599604|ref|YP_964178.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
gi|113885728|gb|ABI39780.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-4]
gi|113889711|gb|ABI43762.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-7]
gi|117613652|gb|ABK49106.1| two component transcriptional regulator, winged helix family
[Shewanella sp. ANA-3]
gi|120559697|gb|ABM25624.1| two component transcriptional regulator, winged helix family
[Shewanella sp. W3-18-1]
gi|319425699|gb|ADV53773.1| two component transcriptional regulator, winged helix family
[Shewanella putrefaciens 200]
Length = 229
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + + SA ++E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|262370701|ref|ZP_06064026.1| two-component system response regulator [Acinetobacter johnsonii
SH046]
gi|262314501|gb|EEY95543.1| two-component system response regulator [Acinetobacter johnsonii
SH046]
Length = 254
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R L + L G+ V + ++ ++ E FSL++ D ++P DG+
Sbjct: 21 ERILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGL 80
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 81 SICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 139
>gi|253732135|ref|ZP_04866300.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253724090|gb|EES92819.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
Length = 188
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ +NG AY+ E ++ +L D+++PEMD
Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++A + E ++ +T + + KPF R++V V LL
Sbjct: 61 GIQVATKLRE-HKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|227499590|ref|ZP_03929697.1| response regulator [Anaerococcus tetradius ATCC 35098]
gi|227218349|gb|EEI83603.1| response regulator [Anaerococcus tetradius ATCC 35098]
Length = 234
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D+D +R+F+ L GY+ V +G A +E +L + DI++P M G
Sbjct: 5 NKKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEKERPALAILDIMLPGMSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + P ++ ++ + + KPF+ ++L+ V L+
Sbjct: 65 YEVCEKIRTEAPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVRSLMRRV 124
Query: 122 N 122
N
Sbjct: 125 N 125
>gi|171915578|ref|ZP_02931048.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 247
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L +L G+ V GASA + + +E F+L++ DI +P+M G E
Sbjct: 6 RILVVEDEPSIADTLQYSLESEGFAVQISGTGASALEILGQEEFALVVLDIGLPDMTGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ V+F+T ++ L KPF R+L V +L
Sbjct: 66 VCRQVR-TSKNVPVIFLTARSSEVDRVVGLEIGGDDYLCKPFSPRELTARVRAVLRR 121
>gi|17231995|ref|NP_488543.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17133639|dbj|BAB76202.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 253
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDIVM 56
+IL+ ED++ ++ L AL + GY VV+ +G SA + ++ PF L++ D+++
Sbjct: 23 RILVVEDEELIQEMLAVALEEEGYGVVTAADGRSAVEYLKSFDPNGGDFPFDLVILDLML 82
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 83 PQINGLDICRLLRHQGNPVPILMLSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 142
Query: 117 LLTIK 121
LL +
Sbjct: 143 LLRRQ 147
>gi|295675889|ref|YP_003604413.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295435732|gb|ADG14902.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|225027575|ref|ZP_03716767.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
gi|224955091|gb|EEG36300.1| hypothetical protein EUBHAL_01832 [Eubacterium hallii DSM 3353]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + EV +G A + ++ + ++L D+++P+MD
Sbjct: 1 MGKKVLVVDDERLIVKGIKFSLVQDDMEVDCAYDGEEALEMAKKTEYDIVLLDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQRIRE-FSNMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|119513113|ref|ZP_01632166.1| Two Component Transcriptional Regulator, LuxR family protein
[Nodularia spumigena CCY9414]
gi|119462247|gb|EAW43231.1| Two Component Transcriptional Regulator, LuxR family protein
[Nodularia spumigena CCY9414]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVSDYLQESGFSVQVASNAREGWDWMQQNTPDLVISDVMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+F+T L KPF +LV V LL
Sbjct: 61 GYQFLKQLREDPRFQTVPVIFLTAKGMTGDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120
Query: 119 TIK 121
+ +
Sbjct: 121 SRR 123
>gi|312889259|ref|ZP_07748813.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311298136|gb|EFQ75251.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 228
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ ILLAEDD D L + L AGY+V NGA A + E + + D++MP MD
Sbjct: 1 MNKHILLAEDDPDFGGILKQYLELAGYQVSWKMNGAEALTFFKTESADICVLDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA + T + P + +F+T + KPF + +LV + +L
Sbjct: 61 GFTLAEKITGIHPGIPFIFLTARNQKEDRLKGLGLGADDYVVKPFEVEELVLRLKNILKR 120
>gi|312884258|ref|ZP_07743967.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368031|gb|EFP95574.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|154493674|ref|ZP_02032994.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
gi|154086884|gb|EDN85929.1| hypothetical protein PARMER_03015 [Parabacteroides merdae ATCC 43184]
Length = 1348
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q +LLA+D+ ++ ++L + L Y VV NG A + E ++++DI+MPEM+G
Sbjct: 1096 KQTVLLADDNQEVLQYLEQQLS-LDYIVVKAFNGKEALAMIEESYPHIVISDIMMPEMNG 1154
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL +R E + V+ +T + ++ + + KPF + L + LL+
Sbjct: 1155 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNLLS 1214
Query: 120 IK 121
++
Sbjct: 1215 LR 1216
>gi|138895848|ref|YP_001126301.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196248740|ref|ZP_03147440.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134267361|gb|ABO67556.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196211616|gb|EDY06375.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ +RR L L + Y + +G A +K + ++L D+++P DGIE
Sbjct: 9 HILVVDDEERIRRLLKMYLERENYVIDEAGDGNVALEKALANDYDVILLDLMLPGKDGIE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + + KPF R++V V LL
Sbjct: 69 VCKEIRE-HKTTPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKALLRR 124
>gi|325479533|gb|EGC82629.1| response regulator receiver domain protein [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 225
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+D++ + L + ++V NG A + ++ + SL++ DI+MPEMD
Sbjct: 1 MNEKILVVDDNDEICNIVTLYLENSSFKVFEAKNGKEALEFLKNDKISLMILDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + D D ++F++ ++V + L+KPF +LV V LL
Sbjct: 61 GIEVLKTI-GNDRDFPIIFLSAKSSVKDKIEGLYLGADDYLAKPFDPAELVARVIALLRR 119
Query: 121 KN 122
N
Sbjct: 120 NN 121
>gi|307728990|ref|YP_003906214.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307583525|gb|ADN56923.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|226312004|ref|YP_002771898.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226094952|dbj|BAH43394.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 238
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +IL+ +D++ +RR L L + + + +NG A + + ++L D+++P
Sbjct: 1 MEKMARILVVDDEERIRRLLKMYLERENFLIDEADNGEQAVEMAVGSDYDIILLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ +R E ++ +T + KPF R+++ V +L
Sbjct: 61 MDGIEVCQRVRE-FKATPIIMLTAKGEETNRVHGFEAGVDDYVVKPFSPREVMYRVKAIL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|212716668|ref|ZP_03324796.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
16992]
gi|212660372|gb|EEB20947.1| hypothetical protein BIFCAT_01601 [Bifidobacterium catenulatum DSM
16992]
Length = 234
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEEGLELFTKGGIDLVLLDLMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ V +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYITKPYSFRELLARVRAVLRR 118
>gi|197103973|ref|YP_002129350.1| phosphate regulon response regulator PhoB [Phenylobacterium
zucineum HLK1]
gi|196477393|gb|ACG76921.1| phosphate regulon response regulator PhoB [Phenylobacterium
zucineum HLK1]
Length = 230
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+D + L L K GYEV + +G A +V+E L++ D ++P++ GIE
Sbjct: 5 RILIVEDEDSLATLLQYNLEKEGYEVAAAGDGEEALLQVQERLPDLIVLDWMLPKVSGIE 64
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ +T + KPF + +L + +L
Sbjct: 65 VCRRLRQRPESRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFAMSELAARIRAVLRR 123
>gi|126702215|gb|ABO26811.1| CpxR [Tatlockia micdadei]
Length = 223
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD ++ L++ L G+EVV ++G +A K +PF ++ D+++P+++
Sbjct: 1 MSNHILIVDDDTELTDLLVQYLEPEGFEVVCVHDGENAVKKALNQPFDAIILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKAIREHL-ETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|83590322|ref|YP_430331.1| two component transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83573236|gb|ABC19788.1| two component transcriptional regulator, winged helix family
[Moorella thermoacetica ATCC 39073]
Length = 240
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + L + GY +G + L++ D+++P +DG+E
Sbjct: 16 RILVVEDETTLANTLARCLREEGYATDIAYDGEEGVAFAETVVYDLIILDLMLPRLDGME 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + V+ +T VA L+KPF L +L+ V LL ++
Sbjct: 76 VIRRLRNERIETPVLMLTARDTVADKVRGLDAGADDYLTKPFALAELLARVRALLRRES 134
>gi|331092296|ref|ZP_08341124.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401728|gb|EGG81307.1| hypothetical protein HMPREF9477_01767 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 233
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTMMVHDGEEALTTFDSYQPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SNTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDAKELVARVKAVLRR 121
>gi|317502263|ref|ZP_07960436.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089008|ref|ZP_08337915.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316896378|gb|EFV18476.1| DNA-binding response regulator SrrA [Lachnospiraceae bacterium
8_1_57FAA]
gi|330406460|gb|EGG85973.1| hypothetical protein HMPREF1025_01498 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 233
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K ++ NG A +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R + ++ ++ + + KPF ++++ V +L
Sbjct: 64 YQVCREIRAK-SGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRY 122
Query: 122 N 122
+
Sbjct: 123 H 123
>gi|86605140|ref|YP_473903.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86553682|gb|ABC98640.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 246
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60
+ILL +D+ ++ L + L + G+ V G SA++ +++ P + LL+ D ++P +
Sbjct: 3 RILLVDDEVELADSLAQHLRREGHSVDVAYEGNSAWELLQKPPAPPYDLLVLDWMLPGLS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L ++ ++D ++F+T + + L KPF LR+L+ V LL
Sbjct: 63 GLSLCQQVRQVDRATPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122
>gi|119717917|ref|YP_924882.1| response regulator receiver [Nocardioides sp. JS614]
gi|119538578|gb|ABL83195.1| response regulator receiver [Nocardioides sp. JS614]
Length = 236
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ + AL G++V + + G+ A +E ++ DI++P+ DG+E
Sbjct: 12 RVLVVDDEANIAELISMALRYEGWQVRAAHTGSKAVAAAKEFRPDAVVLDIMLPDFDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR DP + V+F+T AV ++KPF L +LV + L+
Sbjct: 72 VLRRIRSTDPSVPVVFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLMRR 128
>gi|255975713|ref|ZP_05426299.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis T2]
gi|256762632|ref|ZP_05503212.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256959112|ref|ZP_05563283.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
gi|256964992|ref|ZP_05569163.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis HIP11704]
gi|257079144|ref|ZP_05573505.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis JH1]
gi|257082420|ref|ZP_05576781.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis E1Sol]
gi|257085052|ref|ZP_05579413.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Fly1]
gi|257090017|ref|ZP_05584378.1| two component system response regulator [Enterococcus faecalis
CH188]
gi|257416223|ref|ZP_05593217.1| transcriptional regulatory protein [Enterococcus faecalis AR01/DG]
gi|294781585|ref|ZP_06746921.1| response regulator receiver domain protein [Enterococcus faecalis
PC1.1]
gi|307269514|ref|ZP_07550853.1| response regulator receiver domain protein [Enterococcus faecalis
TX4248]
gi|307273088|ref|ZP_07554334.1| response regulator receiver domain protein [Enterococcus faecalis
TX0855]
gi|307277931|ref|ZP_07559015.1| response regulator receiver domain protein [Enterococcus faecalis
TX0860]
gi|307289241|ref|ZP_07569197.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|312901893|ref|ZP_07761158.1| response regulator receiver domain protein [Enterococcus faecalis
TX0470]
gi|312903451|ref|ZP_07762631.1| response regulator receiver domain protein [Enterococcus faecalis
TX0635]
gi|255968585|gb|EET99207.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis T2]
gi|256683883|gb|EEU23578.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256949608|gb|EEU66240.1| transcriptional regulatory protein [Enterococcus faecalis DS5]
gi|256955488|gb|EEU72120.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis HIP11704]
gi|256987174|gb|EEU74476.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis JH1]
gi|256990450|gb|EEU77752.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis E1Sol]
gi|256993082|gb|EEU80384.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Fly1]
gi|256998829|gb|EEU85349.1| two component system response regulator [Enterococcus faecalis
CH188]
gi|257158051|gb|EEU88011.1| transcriptional regulatory protein [Enterococcus faecalis ARO1/DG]
gi|294451281|gb|EFG19747.1| response regulator receiver domain protein [Enterococcus faecalis
PC1.1]
gi|306499950|gb|EFM69311.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|306505328|gb|EFM74514.1| response regulator receiver domain protein [Enterococcus faecalis
TX0860]
gi|306510073|gb|EFM79097.1| response regulator receiver domain protein [Enterococcus faecalis
TX0855]
gi|306514134|gb|EFM82710.1| response regulator receiver domain protein [Enterococcus faecalis
TX4248]
gi|310633327|gb|EFQ16610.1| response regulator receiver domain protein [Enterococcus faecalis
TX0635]
gi|311291086|gb|EFQ69642.1| response regulator receiver domain protein [Enterococcus faecalis
TX0470]
gi|315037115|gb|EFT49047.1| response regulator receiver domain protein [Enterococcus faecalis
TX0027]
gi|315150777|gb|EFT94793.1| response regulator receiver domain protein [Enterococcus faecalis
TX0012]
gi|315163855|gb|EFU07872.1| response regulator receiver domain protein [Enterococcus faecalis
TX1302]
gi|315169594|gb|EFU13611.1| response regulator receiver domain protein [Enterococcus faecalis
TX1342]
gi|315172458|gb|EFU16475.1| response regulator receiver domain protein [Enterococcus faecalis
TX1346]
gi|315577853|gb|EFU90044.1| response regulator receiver domain protein [Enterococcus faecalis
TX0630]
gi|327535267|gb|AEA94101.1| response regulator [Enterococcus faecalis OG1RF]
Length = 236
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY+V + +G + ++ + ++ D+++P MDG+
Sbjct: 2 KKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + D ++ +T L+KPF R+++ + +
Sbjct: 62 EITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|302874727|ref|YP_003843360.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307690659|ref|ZP_07633105.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302577584|gb|ADL51596.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 234
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D++ + + L Y+V++ ++G A ++E SL+L D+++P + G
Sbjct: 3 KEKILIVDDEEHIVELIKYNLEAEEYKVLTAHDGIEAGKIAKKEKPSLILLDLMLPGISG 62
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ ++ D ++ ++ +T + ++KPF +R+L+ V +L
Sbjct: 63 MEVCKKIRRDDEISEIPIIMLTAKSDELDKILGLELGADDYITKPFSIRELLARVKAVLR 122
Query: 120 IKN 122
N
Sbjct: 123 RTN 125
>gi|192361393|ref|YP_001980674.1| phosphate regulon transcriptional regulatory protein PhoB
[Cellvibrio japonicus Ueda107]
gi|190687558|gb|ACE85236.1| phosphate regulon transcriptional regulatory protein PhoB
[Cellvibrio japonicus Ueda107]
Length = 232
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +KIL+ +D+ +R L AL A Y+ + N A+ + +E L+L D +MP
Sbjct: 1 MTGRKILIVDDESAIRDMLRVALEMADYQCIEAGNAQDAHSLIIDEKPDLILLDWMMPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR E+ +L ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDEVTANLPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|297583783|ref|YP_003699563.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297142240|gb|ADH98997.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 233
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+D+ DM FL + GY+ V NG D V + L+L D++MPEMDG+E
Sbjct: 7 TILIADDEQDMVDFLSDYIEDEGYKAVQAANGQEMLDIVNQRKVDLVLLDVMMPEMDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + + + KPF ++L+ + +
Sbjct: 67 ALRELRTSRR-IPVIMVTAKSDENDRVEGLRSGADDYIVKPFSPKELLARIEAQIRR 122
>gi|29376255|ref|NP_815409.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis V583]
gi|227518892|ref|ZP_03948941.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TX0104]
gi|227553507|ref|ZP_03983556.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis HH22]
gi|229549877|ref|ZP_04438602.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis ATCC 29200]
gi|255972661|ref|ZP_05423247.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|256961795|ref|ZP_05565966.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Merz96]
gi|257086989|ref|ZP_05581350.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis D6]
gi|257419428|ref|ZP_05596422.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|293382858|ref|ZP_06628776.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis R712]
gi|293389655|ref|ZP_06634110.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis S613]
gi|312907671|ref|ZP_07766662.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 512]
gi|312910288|ref|ZP_07769135.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 516]
gi|312951633|ref|ZP_07770528.1| response regulator receiver domain protein [Enterococcus faecalis
TX0102]
gi|29343718|gb|AAO81479.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis V583]
gi|44933850|gb|AAS49397.1| response regulator [Enterococcus faecalis]
gi|227073683|gb|EEI11646.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis TX0104]
gi|227177377|gb|EEI58349.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis HH22]
gi|229304950|gb|EEN70946.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis ATCC 29200]
gi|255963679|gb|EET96155.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|256952291|gb|EEU68923.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis Merz96]
gi|256995019|gb|EEU82321.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecalis D6]
gi|257161256|gb|EEU91216.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|291079523|gb|EFE16887.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis R712]
gi|291081048|gb|EFE18011.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Enterococcus faecalis S613]
gi|310626699|gb|EFQ09982.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 512]
gi|310630350|gb|EFQ13633.1| response regulator receiver domain protein [Enterococcus faecalis
TX0102]
gi|311289561|gb|EFQ68117.1| response regulator receiver domain protein [Enterococcus faecalis
DAPTO 516]
gi|315027859|gb|EFT39791.1| response regulator receiver domain protein [Enterococcus faecalis
TX2137]
gi|315144942|gb|EFT88958.1| response regulator receiver domain protein [Enterococcus faecalis
TX2141]
gi|315147397|gb|EFT91413.1| response regulator receiver domain protein [Enterococcus faecalis
TX4244]
gi|315152346|gb|EFT96362.1| response regulator receiver domain protein [Enterococcus faecalis
TX0031]
gi|315158211|gb|EFU02228.1| response regulator receiver domain protein [Enterococcus faecalis
TX0312]
gi|315162380|gb|EFU06397.1| response regulator receiver domain protein [Enterococcus faecalis
TX0645]
gi|315168899|gb|EFU12916.1| response regulator receiver domain protein [Enterococcus faecalis
TX1341]
gi|315576088|gb|EFU88279.1| response regulator receiver domain protein [Enterococcus faecalis
TX0309B]
gi|315580662|gb|EFU92853.1| response regulator receiver domain protein [Enterococcus faecalis
TX0309A]
gi|323480862|gb|ADX80301.1| two-component response regulator protein, PhoR [Enterococcus
faecalis 62]
Length = 236
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY+V + +G + ++ + ++ D+++P MDG+
Sbjct: 2 KKVLVVDDEPSILTLLTFNLEKEGYQVTTSEDGKNGFELALSNQYDFIILDVMLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + D ++ +T L+KPF R+++ + +
Sbjct: 62 EITKALRREKIDTPILILTAKDEQVDKIIGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 226
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL +D+ +R + L +G+EV + N +A + + +++TDI+MP+MD
Sbjct: 1 MTAKLLLVDDEPGVREAVSAYLEDSGFEVTAVANAQAALEYLETHVPDVIITDIMMPQMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + V+F+T L+KPF +LV + LL
Sbjct: 61 GYAFLETVRQQPHLSHIPVIFLTARGMTRDRIQGYDAGCDAYLAKPFDPDELVAIIKNLL 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|332140178|ref|YP_004425916.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
str. 'Deep ecotype']
gi|327550200|gb|AEA96918.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
str. 'Deep ecotype']
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +L+ ED+ +R L L ++G+ ++ + A +K+ E L+L D ++P
Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LA+ + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229826994|ref|ZP_04453063.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
49176]
gi|229788612|gb|EEP24726.1| hypothetical protein GCWU000182_02378 [Abiotrophia defectiva ATCC
49176]
Length = 245
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD+D+ + L K ++ +G A +E L+L DI++P DG
Sbjct: 4 KKKILIVDDDEDISELISLYLVKECFDTKRAEDGDVAIRLFQEYQPDLILLDIMLPGKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YDVCREIRK-TSKVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|3282774|gb|AAC25063.1| response regulator homolog PhoB [Vibrio cholerae]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E+ ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|153815453|ref|ZP_01968121.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
gi|145847095|gb|EDK24013.1| hypothetical protein RUMTOR_01688 [Ruminococcus torques ATCC 27756]
Length = 233
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K ++ NG A +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDENIAELISLYLTKECFDTKIVFNGEDALSTFETYEPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R + ++ ++ + + KPF ++++ V +L
Sbjct: 64 YQVCREIRAK-SGVPIIMLSAKGEIFDKVLGLELGADDYILKPFDSKEMIARVRAVLRRY 122
Query: 122 N 122
+
Sbjct: 123 H 123
>gi|187923123|ref|YP_001894765.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|187714317|gb|ACD15541.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|91782444|ref|YP_557650.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|296159047|ref|ZP_06841874.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|91686398|gb|ABE29598.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
gi|295890608|gb|EFG70399.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ S ++ E L++ D++MP +D
Sbjct: 1 MATQILVVDDDVELRDLLRDYLARQGIEVSVLHDAGSLERRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ V +L
Sbjct: 61 GLTALRKLRASGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|330501332|ref|YP_004378201.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
gi|328915618|gb|AEB56449.1| osmolarity response regulator [Pseudomonas mendocina NK-01]
Length = 245
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +RR L + + GY V + N + E F+L++ D+++P DG+
Sbjct: 12 EKILIVDDDARLRRLLERFFDEQGYRVRAVENVEQMDRLLARELFNLVVLDLMLPGEDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + + ++ +T + L+KPF+ R+L+ + +L +
Sbjct: 72 SACRRLRESNNQIPIIMLTAKGDESSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 130
>gi|227496770|ref|ZP_03927043.1| response regulator [Actinomyces urogenitalis DSM 15434]
gi|226833723|gb|EEH66106.1| response regulator [Actinomyces urogenitalis DSM 15434]
Length = 252
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + G A +E +++ DI++P+ DG+E
Sbjct: 22 RVLVVDDEQMLADLLASALRYEGWDVTTAATGVKAVQAAQEIEPDVVVLDIMLPDFDGLE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P + V+F+T AV ++KPF L ++V + LL
Sbjct: 82 VMRRIRGRQPSVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARLRALLRR 138
>gi|299537140|ref|ZP_07050443.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
gi|298727381|gb|EFI67953.1| response regulator ArlR [Lysinibacillus fusiformis ZC1]
Length = 224
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL ED+ + RF+ L GYEV + +G E F +LL D+++P ++
Sbjct: 1 MPKKILLVEDEKHIARFVELELQHEGYEVKTAFDGREGLSLATSENFDVLLLDVMLPSIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + ++ +T AV + KPF + +L+ + +L
Sbjct: 61 GIEICRRIRTQ-SQVPIILLTARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 119
>gi|295696527|ref|YP_003589765.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
gi|295412129|gb|ADG06621.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
Length = 228
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +D+ + + L G+ +V+ G A + ++ L++ D ++PEM
Sbjct: 1 MEAMLLLVDDEPRVLDVMATFLQGEGFRIVTAQTGREALEVFQKHQPDLVVLDWMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + + ++ +T A ++KPF LR+L + +L
Sbjct: 61 GLDVCRELRRMGS-VGIIMVTARTEEADKIVGLEVGADDYITKPFSLRELAARIRSVLRR 119
>gi|228476127|ref|ZP_04060835.1| transcriptional regulatory protein ResD [Staphylococcus hominis
SK119]
gi|314936381|ref|ZP_07843728.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
hominis C80]
gi|228269950|gb|EEK11430.1| transcriptional regulatory protein ResD [Staphylococcus hominis
SK119]
gi|313655000|gb|EFS18745.1| DNA-binding response regulator SrrA [Staphylococcus hominis subsp.
hominis C80]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+D +RR L L + + + ++G AY+ E ++ +L D+++PEMD
Sbjct: 1 MTNEILIVDDEDRIRRLLKLYLERESFTIHEASDGKEAYELAMENDYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE++ + E D ++ +T + + KPF R++V V LL
Sbjct: 61 GIEMSSKLRE-HKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|261252149|ref|ZP_05944722.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
orientalis CIP 102891]
gi|260935540|gb|EEX91529.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
orientalis CIP 102891]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332707455|ref|ZP_08427504.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
gi|332353806|gb|EGJ33297.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
Length = 236
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + L GY+V +G A + + P L+++D++MPEMDG+
Sbjct: 2 KKILVVDDDKTLLTLLKRYLEHRGYQVEQVCSGTEALEACVKNPPDLVVSDVLMPEMDGL 61
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR + + +F++ A + + ++ L+KP R+L ++ LL
Sbjct: 62 EFCRRLRNIPNGRLMPFIFLSSKAELEDRINGHSMGADDYLTKPVAPRELEAKIEALLER 121
Query: 121 KN 122
+
Sbjct: 122 SH 123
>gi|209526757|ref|ZP_03275279.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209492801|gb|EDZ93134.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 253
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+A+D+ +RR L L GY VV+ +G A + E L++ D++MP ++G
Sbjct: 14 EKILIADDESAIRRILTTRLSMVGYSVVAAADGLQAIEMFDRESPDLVVLDVMMPRLNGY 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + D+ ++ +T VA L+KPF ++L ++ +L
Sbjct: 74 GVCQKIRAI-SDIPIIMLTALGDVADRITGLELGADDYLTKPFSPKELEARIHAILRR 130
>gi|332143338|ref|YP_004429076.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
ecotype']
gi|327553360|gb|AEB00079.1| osmolarity response regulator [Alteromonas macleodii str. 'Deep
ecotype']
Length = 240
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F L++ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLLEQGYQVRSAANAEQMDRLLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + D+ ++ +T L KPF+ R+L+ +L ++
Sbjct: 67 ICRRLRQQENDMPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARAKAVLRRRS 125
>gi|153815879|ref|ZP_01968547.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
gi|317500635|ref|ZP_07958854.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089885|ref|ZP_08338778.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846698|gb|EDK23616.1| hypothetical protein RUMTOR_02124 [Ruminococcus torques ATCC 27756]
gi|316897953|gb|EFV20005.1| hypothetical protein HMPREF1026_00797 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403582|gb|EGG83140.1| hypothetical protein HMPREF1025_02361 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 230
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED++ + L + +EV N+G + K F L++ D+++P +D
Sbjct: 1 MSKRILIVEDEESIADLEKDYLELSNFEVEVANDGDTGLQKGLGGDFDLIILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ ++ ++KPF +LV V L
Sbjct: 61 GFEICRQIRDQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 119
>gi|312880968|ref|ZP_07740768.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
gi|310784259|gb|EFQ24657.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
Length = 235
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ + + +AL + GY V + +G A + L++ D+++P++DG
Sbjct: 4 ERILVVEDERSIADLVAEALRRQGYRVETAGDGDQALEVAETTLPDLVILDLMLPKLDGW 63
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E + ++ +T L KPF L +L+ V L
Sbjct: 64 EVCRRLREEETTRRIPIIMLTARRDEKDVVAGLELGADDYLRKPFSLAELLARVKAHLRA 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|296111785|ref|YP_003622167.1| alkaline phosphatase synthesis transcriptional regulatory
proteinPhoP [Leuconostoc kimchii IMSNU 11154]
gi|295833317|gb|ADG41198.1| alkaline phosphatase synthesis transcriptional regulatory
proteinPhoP [Leuconostoc kimchii IMSNU 11154]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L L + GY V +G +AY+ + ++ F +L D+++P MDG+
Sbjct: 3 KILVVDDETSISTLLKYNLEQNGYTVTVAADGQTAYELIGKQNFDAILLDLMLPVMDGMT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T ++KPF R+++ + +L
Sbjct: 63 VLKTIRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRR 119
>gi|258405968|ref|YP_003198710.1| two component transcriptional regulator, winged helix family
[Desulfohalobium retbaense DSM 5692]
gi|257798195|gb|ACV69132.1| two component transcriptional regulator, winged helix family
[Desulfohalobium retbaense DSM 5692]
Length = 236
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED++ + L L + GY V +G A + F L++ D+++P +DG E
Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+AR + P L ++ +T L+KPFHL++L+ V +L K
Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFHLKELLLRVQGMLKRK 125
>gi|187779465|ref|ZP_02995938.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
15579]
gi|187773090|gb|EDU36892.1| hypothetical protein CLOSPO_03061 [Clostridium sporogenes ATCC
15579]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ ++F++ + + + KPF +++L V L
Sbjct: 60 GFQVCQKIRNKVS-CPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|254418732|ref|ZP_05032456.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
gi|196184909|gb|EDX79885.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
Length = 240
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD +R L AL KAG +G +A + +L++ DI MP MD
Sbjct: 4 MQSTVLVVDDDPHIRDLLTFALQKAGLATREAADGEAALADIALYRPNLVVLDINMPRMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE RR DL V+F++ ++KPF R++V V +L
Sbjct: 64 GIEACRRIRAQG-DLPVLFLSSRDDEIDRILGMELGADDYVTKPFSPREVVARVAAILRR 122
>gi|315613222|ref|ZP_07888132.1| response regulator [Streptococcus sanguinis ATCC 49296]
gi|315314784|gb|EFU62826.1| response regulator [Streptococcus sanguinis ATCC 49296]
Length = 252
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 19 KKILIVDDEKPISDIIKFNMAKEGYEVVTAFNGREAIELFEAEQPDIIILDLMLPEIDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 79 EVAKSIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 135
>gi|289450472|ref|YP_003474684.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185019|gb|ADC91444.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 239
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +DD ++ + K G++V + N+G A +++ + ++++ D+++P DG
Sbjct: 2 KKVLVVDDDRNICELVQLYFEKDGFQVKTVNDGEMALEEIDKYNPNVVILDLMLPGKDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++ ++ +T +SKPF ++LV +L
Sbjct: 62 EVCREIRK-TSNVPILMLTARGDTLDKIVGLELGADDYISKPFDPKELVVRAKTVLRR 118
>gi|262273559|ref|ZP_06051373.1| two-component system response regulator OmpR [Grimontia hollisae
CIP 101886]
gi|262222537|gb|EEY73848.1| two-component system response regulator OmpR [Grimontia hollisae
CIP 101886]
Length = 238
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRSLLERYLSEQGFQVRSVANAEQMDRLLSRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRQANNQLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|239995182|ref|ZP_04715706.1| putative DNA-binding response regulator PhoB [Alteromonas macleodii
ATCC 27126]
Length = 229
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +L+ ED+ +R L L ++G+ ++ + A +K+ E L+L D ++P
Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDFDIAQEKICEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LA+ + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|206968529|ref|ZP_03229485.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|206737449|gb|EDZ54596.1| DNA-binding response regulator [Bacillus cereus AH1134]
Length = 225
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L+ L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLMLYLTPIGYNCVCATSGEEAILHIENRNFKFILLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|229061164|ref|ZP_04198514.1| Two-component response regulator [Bacillus cereus AH603]
gi|228718035|gb|EEL69675.1| Two-component response regulator [Bacillus cereus AH603]
Length = 225
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|117928656|ref|YP_873207.1| two component transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117649119|gb|ABK53221.1| two component transcriptional regulator, winged helix family
[Acidothermus cellulolyticus 11B]
Length = 246
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ + AL G++V + + G A + L++ D+++P++DG E
Sbjct: 7 RVLVVDDEQNITDLVATALRYEGFQVATAHTGVQALQTAAKTHPDLVILDVMLPDIDGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR V+F+T A ++KPF L +LV V+ +L
Sbjct: 67 VARRLGREGVPTPVLFLTARDATEDKVRGLTVGGDDYVTKPFSLAELVARVHAILRR 123
>gi|330998526|ref|ZP_08322347.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
gi|329568257|gb|EGG50073.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
Length = 1341
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ + + K L Y V++ NG A ++++ L+++D++MP MDG L
Sbjct: 1094 ILLVDDNTQLLEMMEKILATK-YRVLTAENGLEALEQLKASAVDLIVSDVMMPGMDGFAL 1152
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R+ + V+ +T + D L+KPF L+ L ++ LL
Sbjct: 1153 CRKLKSQLETSHIPVIMLTAKQSADDRVDCYEAGADGYLAKPFELKVLAARIDNLL 1208
>gi|253995872|ref|YP_003047936.1| two component transcriptional regulator PhoB [Methylotenera mobilis
JLW8]
gi|253982551|gb|ACT47409.1| two component transcriptional regulator PhoB, winged helix family
[Methylotenera mobilis JLW8]
Length = 235
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ L + +AG+ + +G A D +RE L+L D ++P M+
Sbjct: 1 MPANILVIEDEPAIQELLALNITQAGHNAIRALSGEIALDLMRETVPDLILLDWMLPGMN 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ELAR+ ++ ++ +T ++KPF R+L + +L
Sbjct: 61 GLELARKLKSDTYTKNIPIIMLTARGEEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|88861074|ref|ZP_01135709.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
gi|88817002|gb|EAR26822.1| osmolarity response regulator [Pseudoalteromonas tunicata D2]
Length = 241
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY V S N + E F LL+ D+++P DG+
Sbjct: 9 KILVVDDDMRLRSLLERYLVEQGYIVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + D+ ++ +T + KPF+ R+L+ + +L ++
Sbjct: 69 ICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRRS 127
>gi|125974309|ref|YP_001038219.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum ATCC 27405]
gi|256003472|ref|ZP_05428462.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum DSM 2360]
gi|281418364|ref|ZP_06249384.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum JW20]
gi|125714534|gb|ABN53026.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum ATCC 27405]
gi|255992496|gb|EEU02588.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum DSM 2360]
gi|281409766|gb|EFB40024.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum JW20]
gi|316941457|gb|ADU75491.1| response regulator receiver modulated diguanylate cyclase
[Clostridium thermocellum DSM 1313]
Length = 310
Score = 154 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D + M + + L GYEVV+ +NG + VR E L+L D+VMP+MDG
Sbjct: 3 KKKILVIDDTEFMTKLISDVLMNEGYEVVTASNGRQGIEMVRIEKPDLVLLDVVMPDMDG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R E + + + ++ +T ++KPF+ R+LV+ V L
Sbjct: 63 FEVCRILREDEGNNLMPIIMLTAQDNEDDKLTGLELGADDYITKPFNTRELVSRVRNTLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|309386157|gb|ADO67022.1| response regulator [Enterococcus faecium]
Length = 228
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D++ + + L Y V +GA A +K + L++ D+++P+ D
Sbjct: 1 MSMKILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R+ E+ ++ ++ +T + + KPF ++LV + +L
Sbjct: 61 GLTVCRKIREV-SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 119
>gi|258512529|ref|YP_003185963.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257479255|gb|ACV59574.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 239
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+L+ +D+ +R + ++G++V + ++G AY+K+++ + L++ D+++P MDG
Sbjct: 3 TVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + ++ +T ++KPF R+LV +L
Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRR 121
>gi|238063933|ref|ZP_04608642.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
gi|237885744|gb|EEP74572.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
Length = 318
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L G+EV+ ++G A + + + L + D++MP +DG+EL
Sbjct: 11 ILVVDDDADIARFVEFNLRLHGFEVIHASDGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + L V+ +T + L KPF +LV V+ L
Sbjct: 71 TRRLRANPMTSALPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128
>gi|224825947|ref|ZP_03699050.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
gi|224601584|gb|EEG07764.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
Length = 241
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L++ LG+ GY V + + K+ L++ D++MP DG
Sbjct: 3 NSKILVVDDDAKLRDLLVRYLGQQGYTVDTLPDARELQRKLARNRPDLMVLDVMMPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + V+ +T L KPF+ R+LV + +L
Sbjct: 63 LAVVRRLRAQGEMVPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELVARIQSVLRRH 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|167622181|ref|YP_001672475.1| osmolarity response regulator [Shewanella halifaxensis HAW-EB4]
gi|167352203|gb|ABZ74816.1| two component transcriptional regulator, winged helix family
[Shewanella halifaxensis HAW-EB4]
Length = 241
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQMGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|153954968|ref|YP_001395733.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219855413|ref|YP_002472535.1| hypothetical protein CKR_2070 [Clostridium kluyveri NBRC 12016]
gi|146347826|gb|EDK34362.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219569137|dbj|BAH07121.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 227
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ +D++ MR + L + G +V+ NG A K +E L++ DI+MP MD
Sbjct: 1 MNKTVLMVDDEERMRLLIEAYLKREGLKVLLAENGEEALRKFKENHVDLVVLDIMMPLMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R ++ ++ ++ +T ++KP + LV ++ LL
Sbjct: 61 GWTVCRELRKI-SNVPIIMLTARGEDEDQLLGFQLGTDSYVTKPVSPKILVAKIKALLRR 119
>gi|156742456|ref|YP_001432585.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156233784|gb|ABU58567.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 224
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ ++ +L + L GY V +G A + RE P L++ D+++P +D
Sbjct: 1 MSA-ILIVEDEAEIAGYLRRGLTFEGYNVEIAADGRQALEIARERPPDLVVLDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR D+ ++ +T AV L KPF +L+ + L
Sbjct: 60 GLEVARRLRAA-SDVPIIMLTARDAVPDRVAGLEAGADDYLIKPFAFEELLARIRVQLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|126173616|ref|YP_001049765.1| two component transcriptional regulator [Shewanella baltica OS155]
gi|152999896|ref|YP_001365577.1| two component transcriptional regulator [Shewanella baltica OS185]
gi|160874521|ref|YP_001553837.1| two component transcriptional regulator [Shewanella baltica OS195]
gi|217974139|ref|YP_002358890.1| two component transcriptional regulator PhoB, winged helix family
[Shewanella baltica OS223]
gi|304409488|ref|ZP_07391108.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|307303846|ref|ZP_07583599.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|125996821|gb|ABN60896.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS155]
gi|151364514|gb|ABS07514.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS185]
gi|160860043|gb|ABX48577.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS195]
gi|217499274|gb|ACK47467.1| two component transcriptional regulator PhoB, winged helix family
[Shewanella baltica OS223]
gi|304352006|gb|EFM16404.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|306912744|gb|EFN43167.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|315266760|gb|ADT93613.1| two component transcriptional regulator PhoB, winged helix family
[Shewanella baltica OS678]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + + SA ++E L+L D + P
Sbjct: 1 MTARILIVEDELAIREMLTFVMEQHGFTTSAAEDFDSAIALLKEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|160879116|ref|YP_001558084.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160427782|gb|ABX41345.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD D+ + L Y V +G A ++E F L++ DI+MP+MD
Sbjct: 1 MKKNILIVDDDKDISELIAVYLKSEDYYVDKACSGLEALQLIKENNFDLVILDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E + ++ ++F+T + +SKPF +L+ V L
Sbjct: 61 GLETLIHIRKDF-NMPIIFLTAKNQEIDLIRGLSLGADDYISKPFSSMELIARVKAQLRR 119
>gi|254228565|ref|ZP_04921990.1| osmolarity response regulator [Vibrio sp. Ex25]
gi|151938947|gb|EDN57780.1| osmolarity response regulator [Vibrio sp. Ex25]
Length = 237
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|291535462|emb|CBL08574.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
Length = 234
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ N+G A + +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALKAFEQYSPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREVRAK-ANVPIIMLSAKGEIFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121
>gi|313636362|gb|EFS02144.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria seeligeri FSL S4-171]
Length = 240
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G++ Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + D+ ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|300172950|ref|YP_003772116.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Leuconostoc gasicomitatum LMG 18811]
gi|299887329|emb|CBL91297.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Leuconostoc gasicomitatum LMG 18811]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L L + GY+V +G SAY+ + E+ F +L D+++P MD
Sbjct: 1 MT-KILVVDDEPAISTLLKYNLEQNGYQVTIATDGQSAYELIGEQTFDAILLDLMLPVMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+ +T ++KPF LR+++ + +L
Sbjct: 60 GMTVLKNLRQDKIATPVLLVTAKGDEFDRVFGLELGADDYITKPFSLREVLARLKAVLRR 119
>gi|238028314|ref|YP_002912545.1| putative two-component system, response regulator [Burkholderia
glumae BGR1]
gi|237877508|gb|ACR29841.1| Putative two-component system, response regulator [Burkholderia
glumae BGR1]
Length = 241
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ RR D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRRLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|269928581|ref|YP_003320902.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269787938|gb|ACZ40080.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 233
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+A+DD + R + L GY VV+ NG A + E +++ D++MP MDG E
Sbjct: 6 VLVADDDAPILRLVRTKLQADGYSVVTAMNGREAVEIFERERPDIVILDLMMPVMDGFEA 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R ++ + V+ +T + A ++KPF +L V +L
Sbjct: 66 MQRIRQM-SNAPVIMLTARSGQADKIRGLDLGADDYVTKPFSPDELSARVAAVLRR 120
>gi|229015978|ref|ZP_04172939.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229022195|ref|ZP_04178745.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228739126|gb|EEL89572.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228745338|gb|EEL95379.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQKVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|226310515|ref|YP_002770409.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093463|dbj|BAH41905.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 261
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+A+DD ++R + K E+++ +G A + + +E +++ D++MP++DG E
Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D ++ +T ++KPF R++V + ++
Sbjct: 94 ACREIRKKW-DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRR 149
>gi|210613371|ref|ZP_03289691.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
gi|210151213|gb|EEA82221.1| hypothetical protein CLONEX_01898 [Clostridium nexile DSM 1787]
Length = 233
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTMMVHDGEDALSAFDTYAPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++L+ V +L
Sbjct: 64 YQVCRDIRSR-SNTPIIMLSAKGEVFDKVLGLELGADDYIIKPFDAKELIARVKAVLRR 121
>gi|196035783|ref|ZP_03103186.1| DNA-binding response regulator [Bacillus cereus W]
gi|195991750|gb|EDX55715.1| DNA-binding response regulator [Bacillus cereus W]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|170724520|ref|YP_001758546.1| osmolarity response regulator [Shewanella woodyi ATCC 51908]
gi|169809867|gb|ACA84451.1| two component transcriptional regulator, winged helix family
[Shewanella woodyi ATCC 51908]
Length = 241
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQNGSPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|56750160|ref|YP_170861.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|56685119|dbj|BAD78341.1| two-component response regulator [Synechococcus elongatus PCC 6301]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D++ + + L + GY+V ++G + +P+ LL+ D ++PE G++
Sbjct: 2 RILLVDDEEALTAPPHRMLRREGYDVDVASDGQTGEQLATHQPYDLLILDWMLPERSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D + V+F+T V L KPF L++L+ V LL
Sbjct: 62 LCRSVRQRDRQVPVLFLTARDTVDDRVQGLDAGADDYLVKPFELKELLARVRALLRR 118
>gi|163938276|ref|YP_001643160.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163860473|gb|ABY41532.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 237
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L + L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDTT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|163939390|ref|YP_001644274.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229010879|ref|ZP_04168076.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
2048]
gi|229132382|ref|ZP_04261236.1| Transcriptional regulatory protein srrA [Bacillus cereus
BDRD-ST196]
gi|229166418|ref|ZP_04294174.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
gi|163861587|gb|ABY42646.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228616992|gb|EEK74061.1| Transcriptional regulatory protein srrA [Bacillus cereus AH621]
gi|228651088|gb|EEL07069.1| Transcriptional regulatory protein srrA [Bacillus cereus
BDRD-ST196]
gi|228750553|gb|EEM00382.1| Transcriptional regulatory protein srrA [Bacillus mycoides DSM
2048]
Length = 238
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L DI+MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGIREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|323491596|ref|ZP_08096775.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
gi|323314172|gb|EGA67257.1| DNA-binding response regulator PhoB [Vibrio brasiliensis LMG 20546]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQTVEAEDYDTAVTKLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|169831576|ref|YP_001717558.1| two component transcriptional regulator [Candidatus Desulforudis
audaxviator MP104C]
gi|169638420|gb|ACA59926.1| two component transcriptional regulator, winged helix family
[Candidatus Desulforudis audaxviator MP104C]
Length = 231
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + L K G++VV N+G A + V L++ DI++P +DG+
Sbjct: 3 RILVVEDEKHIVELMRYGLEKEGFQVVEANDGDRALEMVHTGRIDLVVLDIMLPGLDGLT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E D+ V+ ++ ++KPF +R+LV V L
Sbjct: 63 VCRLLRQNERTRDIPVIILSARGQELDRVLGLELGADDYITKPFSVRELVARVKARLRR 121
>gi|148980999|ref|ZP_01816248.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
gi|145961039|gb|EDK26361.1| DNA-binding response regulator PhoB [Vibrionales bacterium SWAT-3]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A +K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVNKLCEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GVNFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|144897363|emb|CAM74227.1| two-component transcriptional regulator, winged helix family
[Magnetospirillum gryphiswaldense MSR-1]
Length = 243
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L K G V + +GA + L++ D++MP DG+
Sbjct: 6 HILVVDDDHEIRDLLARFLAKHGLHVSTARDGAEMTKLLDAHGIDLVVLDLMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L ++ +T A L KPF+ R+L+ + +L
Sbjct: 66 LTRRLRAQGCTLPIIMLTAMAEDTDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR 122
>gi|91225176|ref|ZP_01260398.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
gi|254228694|ref|ZP_04922118.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. Ex25]
gi|262395154|ref|YP_003287008.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. Ex25]
gi|269965135|ref|ZP_06179269.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
gi|91190119|gb|EAS76390.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 12G01]
gi|151938873|gb|EDN57707.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. Ex25]
gi|262338748|gb|ACY52543.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. Ex25]
gi|269830121|gb|EEZ84348.1| DNA-binding response regulator PhoB [Vibrio alginolyticus 40B]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|163848057|ref|YP_001636101.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525947|ref|YP_002570418.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163669346|gb|ABY35712.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449826|gb|ACM54092.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ FL + L GY+V +G + + L++ D+++P +DG+E
Sbjct: 3 RILVIEDETEIASFLRRGLSLEGYQVDVAFDGTRGLELASTGTYDLIVLDLMLPGIDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ARR D ++ ++ +T AV L KPF +L+ + L +
Sbjct: 63 VARRLRA-DSNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRR 119
>gi|307711284|ref|ZP_07647705.1| response regulator [Streptococcus mitis SK321]
gi|307616935|gb|EFN96114.1| response regulator [Streptococcus mitis SK321]
Length = 232
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + + + L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVLVAHDGVEALEIFKRKAIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILRR 120
>gi|304406669|ref|ZP_07388324.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304344202|gb|EFM10041.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 242
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ + + L AGYEV ++G + ++ ++ L++ D+++P+MDG
Sbjct: 3 KKKILIVDDEPSISMLIEFNLKLAGYEVRCVHDGEAVFEHLKPFRPDLIVLDLMLPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I++ R + + ++ +T V ++KPF ++L++ + +
Sbjct: 63 IQVCRELRRQNNAVPIVMLTALQDVTDKISGLDNGADDYMTKPFSPQELISRIQAIFRR 121
>gi|283768598|ref|ZP_06341510.1| putative regulatory protein VanR [Bulleidia extructa W1219]
gi|283104990|gb|EFC06362.1| putative regulatory protein VanR [Bulleidia extructa W1219]
Length = 232
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ D+ L L K +E+++ NG A + V++E L+L DI+MP MDG++
Sbjct: 3 RILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDGVK 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ ++F++ + ++KPFH +++ + L
Sbjct: 63 ATKEIRK-NQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRR 118
>gi|229134404|ref|ZP_04263217.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|229168317|ref|ZP_04296042.1| Two-component response regulator [Bacillus cereus AH621]
gi|228615143|gb|EEK72243.1| Two-component response regulator [Bacillus cereus AH621]
gi|228649025|gb|EEL05047.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|153834652|ref|ZP_01987319.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
harveyi HY01]
gi|156973339|ref|YP_001444246.1| response regulator [Vibrio harveyi ATCC BAA-1116]
gi|269962450|ref|ZP_06176800.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
gi|148868964|gb|EDL68018.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
harveyi HY01]
gi|156524933|gb|ABU70019.1| hypothetical protein VIBHAR_01026 [Vibrio harveyi ATCC BAA-1116]
gi|269832946|gb|EEZ87055.1| DNA-binding response regulator PhoB [Vibrio harveyi 1DA3]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|300088282|ref|YP_003758804.1| winged helix family two component transcriptional regulator
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528015|gb|ADJ26483.1| two component transcriptional regulator, winged helix family
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 229
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ EDD ++ + L L K Y+VV +G A + R+E L+L DI++P++
Sbjct: 1 MQNKVLIVEDDPNLLKTLKYNLNKESYDVVIAADGEQALEVARKEKPDLILLDIMLPKLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T A ++KPF +R+L+ V +L
Sbjct: 61 GFEVCRILRKEMNS-PILMLTAKADETDKIVGLEIGADDYVTKPFSMRELIARVRAMLRR 119
>gi|262392644|ref|YP_003284498.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
gi|262336238|gb|ACY50033.1| two-component system response regulator OmpR [Vibrio sp. Ex25]
Length = 239
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|229012775|ref|ZP_04169944.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|228748456|gb|EEL98312.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 225
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHTIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|229020106|ref|ZP_04176887.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1273]
gi|229026335|ref|ZP_04182694.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1272]
gi|228735051|gb|EEL85687.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1272]
gi|228741216|gb|EEL91433.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1273]
Length = 232
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+MDG E+
Sbjct: 6 ILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAMHIIQTQPIELVVLDIMMPKMDGYEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++F++ + ++KPF +LV VN L
Sbjct: 66 TRQIRAKH-HMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120
>gi|218289692|ref|ZP_03493900.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|218240149|gb|EED07333.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
Length = 239
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+L+ +D+ +R + ++G++V + ++G AY+K+++ + L++ D+++P MDG
Sbjct: 3 TVLVVDDEASIRTLVEYNFSRSGFDVETVDDGRVAYEKLKQGASKYDLVVLDLMLPGMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + + ++ +T ++KPF R+LV +L
Sbjct: 63 LEVCRRLRQEGVKIPIILLTARDEEVDLVLGLELGADDYVTKPFSPRELVARARAVLRR 121
>gi|116253342|ref|YP_769180.1| two-component response regulator transcriptional regulatory protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|115257990|emb|CAK09088.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 297
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD ++ R + L + G++V + NG D +R+ L++ D+++P D
Sbjct: 63 MARTILVVDDDPEIGRLVAALLSREGFDVRTAENGMELDDVLRKVRPDLIILDLMLPGED 122
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + RR ++ +T +SKPF R+L+ V LL
Sbjct: 123 GLSICRRMRSEGA-FPILMLTAKNDEMDRVVGLEVGADDYVSKPFGPRELLARVRALLRR 181
>gi|89096579|ref|ZP_01169471.1| two-component response regulator [Bacillus sp. NRRL B-14911]
gi|89088594|gb|EAR67703.1| two-component response regulator [Bacillus sp. NRRL B-14911]
Length = 228
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD ++R + L G + N A K+ E+ F L++ DI+MPEMD
Sbjct: 1 MDGNILIVDDDKEIRHLISVYLENEGLKTSQAENALEALGKLEEQAFDLIILDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + E + ++ ++ + +SKPF+ +L+ V L
Sbjct: 61 GIEACMKIREEQ-HMPIIMLSAKSEDMDKIQGLTSGADDYISKPFNPLELIARVKSHLRR 119
>gi|158318242|ref|YP_001510750.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158113647|gb|ABW15844.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 270
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ + AL G++VV+ G A + + LL+ D+++P+ DG E
Sbjct: 22 RVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGFE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ V+++T A ++KPF + +L+ V +L
Sbjct: 82 VCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRR 138
>gi|157963828|ref|YP_001503862.1| osmolarity response regulator [Shewanella pealeana ATCC 700345]
gi|157848828|gb|ABV89327.1| two component transcriptional regulator, winged helix family
[Shewanella pealeana ATCC 700345]
Length = 241
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|163815699|ref|ZP_02207071.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
gi|238925901|ref|YP_002939419.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
gi|253578345|ref|ZP_04855617.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|158449004|gb|EDP25999.1| hypothetical protein COPEUT_01880 [Coprococcus eutactus ATCC 27759]
gi|238877578|gb|ACR77285.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
gi|251850663|gb|EES78621.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
gi|291522656|emb|CBK80949.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 233
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ L L GY V C NG A +++ L + DI++P++D
Sbjct: 1 MNKKILIVDDEKEIVDLLEVYLSNDGYSVYKCYNGLEAMKCIKQSQIDLAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E ++ +T + ++KPF+ ++V V L
Sbjct: 61 GFRLCQKIREKFY-FPIIMLTAKIEDSDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|291522156|emb|CBK80449.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 226
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K G+ V+ +G A DK E + +L++ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVRDFLTKKGFTVIEAGDGEEAVDKFFEVKDIALIILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R + + ++ +T + + ++KPF + LV V +L N
Sbjct: 65 QVCREIRQ-YSKVPIIMLTAKSDEKDELQGFDLGVDEYITKPFSPKILVARVEAILRRSN 123
>gi|326391416|ref|ZP_08212953.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|325992551|gb|EGD51006.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KI + +D+ + + L G+ V++ NG + + +++E L++ D+++P +
Sbjct: 1 MNKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTLKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|315222867|ref|ZP_07864751.1| response regulator receiver domain protein [Streptococcus anginosus
F0211]
gi|315188061|gb|EFU21792.1| response regulator receiver domain protein [Streptococcus anginosus
F0211]
Length = 228
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D+ ++ + L +AGYEV ++G A + ++ L++TDI+MP MD
Sbjct: 1 MAKRILLVDDEVEITEINKRYLIQAGYEVNVAHDGQEALEIFQKYSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + S + ++KPF R+LV VN +L
Sbjct: 61 GYDLIGEVQYLSPEQPFLFITAKTSEPDKIYSLSMGADDFITKPFSPRELVLRVNNILRR 120
>gi|159898013|ref|YP_001544260.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891052|gb|ABX04132.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 228
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL +D+ +R+ + +L + GY VV +NG A + R E L++ D++MPEM+
Sbjct: 1 MDYTILLIDDEAKLRQVIRLSLEQEGYRVVEASNGREALYRARIEKPDLVVLDLMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + V+ +T ++KPF++R+L+ + +L
Sbjct: 61 GTEFLLAF-SKESNTPVIMLTARVEDHDKIIGLELGADDYITKPFNMRELIARIRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 TH 121
>gi|332994441|gb|AEF04496.1| putative DNA-binding response regulator PhoB [Alteromonas sp. SN2]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +L+ ED+ +R L L ++G+ ++ + A +K+ E L+L D ++P
Sbjct: 1 MSRTVLVVEDEAPIREMLKFVLEQSGFNIIEAEDYDIAQEKICEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LA+ + D+ V+ +T ++KPF ++L+ + ++
Sbjct: 61 GVQLAKSLKQHEFTRDIPVIMLTARGEEEDKIRGLDAGADDYVTKPFSPKELIARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|257867536|ref|ZP_05647189.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257873865|ref|ZP_05653518.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257877616|ref|ZP_05657269.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|257801592|gb|EEV30522.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257808029|gb|EEV36851.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257811782|gb|EEV40602.1| transcriptional regulator [Enterococcus casseliflavus EC20]
Length = 235
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+VVS ++G A+D +PF ++ D+++P +DGI
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVVSASDGQKAFDLALSKPFDFIILDVMLPNLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|187776729|ref|ZP_02993202.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
15579]
gi|187775388|gb|EDU39190.1| hypothetical protein CLOSPO_00244 [Clostridium sporogenes ATCC
15579]
Length = 230
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD + FL L K GYEV NG A +K++ E F L+L DI+MP++D
Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIKNEKFDLILMDIMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + + ++F+T ++KPF L +L ++ +L
Sbjct: 61 GFEAIKVIRKFT-NTPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLIELSLRMSAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|144900225|emb|CAM77089.1| phosphate regulon transcriptional regulatory protein phoB
[Magnetospirillum gryphiswaldense MSR-1]
Length = 233
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + L L K GY V +G A V E L++ D ++P +
Sbjct: 3 MKPLILIVEDEAALATMLRYNLEKEGYRVCEAGDGEEALTLVSERKPDLMVLDWMLPSLS 62
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R+ +L ++ +T ++KPF L +L+ + +L
Sbjct: 63 GIEVCRQLRRKPATRELPIIMLTARGEEGDKIRGLNTGADDYMTKPFSLPELMARIRAML 122
Query: 119 TI 120
Sbjct: 123 RR 124
>gi|46810476|gb|AAT01619.1| PhoB [Pseudomonas stutzeri]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN K IL+ +D+ +R ++ AL AGY+ + N A+ + + L+L D ++P
Sbjct: 1 MNGKSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR EL D ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|54307405|ref|YP_128425.1| osmolarity response regulator [Photobacterium profundum SS9]
gi|46911825|emb|CAG18623.1| putative transcriptional regulator OmpR [Photobacterium profundum
SS9]
Length = 239
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNKLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|300715551|ref|YP_003740354.1| Response regulator in two-component regulatory system with PhoR
[Erwinia billingiae Eb661]
gi|299061387|emb|CAX58497.1| Response regulator in two-component regulatory system with PhoR
[Erwinia billingiae Eb661]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA + + E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVNLLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|228906049|ref|ZP_04069939.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
200]
gi|228853596|gb|EEM98363.1| hypothetical protein bthur0013_2340 [Bacillus thuringiensis IBL
200]
Length = 237
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|153833922|ref|ZP_01986589.1| osmolarity response regulator [Vibrio harveyi HY01]
gi|269959399|ref|ZP_06173782.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
gi|148869760|gb|EDL68737.1| osmolarity response regulator [Vibrio harveyi HY01]
gi|269835836|gb|EEZ89912.1| Transcriptional regulatory protein ompR [Vibrio harveyi 1DA3]
Length = 239
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|68536618|ref|YP_251323.1| two-component system response regulator TcsR5 [Corynebacterium
jeikeium K411]
gi|68264217|emb|CAI37705.1| two-component system response regulator TcsR5 [Corynebacterium
jeikeium K411]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L ++L GY V+ +G A + EE L + D++MP+ DG++
Sbjct: 2 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R DL ++ +T +V L KPF L +L+ L
Sbjct: 62 VCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118
>gi|220904004|ref|YP_002479316.1| winged helix family two component transcriptional regulator
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219868303|gb|ACL48638.1| two component transcriptional regulator, winged helix family
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
Length = 259
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL ED++D+ L L GY + NG + + F ++ D+++P MD
Sbjct: 1 MSCSLLLVEDNEDILANLYAYLEPLGYTLDCARNGKAGLEMALGRGFDCIVLDVMLPGMD 60
Query: 61 GIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI L RR + V+ +T AVA L KPF L++L + LL
Sbjct: 61 GISLCRRLRQEYRVSTPVIMLTARDAVADRVAGLEAGADDYLVKPFALKELEARIRALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|302553272|ref|ZP_07305614.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302470890|gb|EFL33983.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 240
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +LLAEDD +R L +AL GY+V++ +G A + +L+ D++MP +D
Sbjct: 1 MPQTVLLAEDDRAIRNALERALTLEGYQVMAVADGVEALAQAHRNRPDVLVLDVMMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R V+ +T A + KPF + ++ + LL
Sbjct: 61 GLQVCRVLRAEGDRTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 120
>gi|291298248|ref|YP_003509526.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290567468|gb|ADD40433.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 233
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ EDD ++ + + L + GY V +G S + R L++ D+++P
Sbjct: 1 MTQQIAHILVVEDDPNVSDVVRRYLEREGYRVTLAADGLSGLAEYRSGRPDLVVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ GIE+ R ++ ++ V+ +T + + LSKPF R+LV V +
Sbjct: 61 KLPGIEVCRALR-IESEVPVIMLTALGDESDRIAGLSVGADDYLSKPFSPRELVLRVAAV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|228996687|ref|ZP_04156324.1| Transcriptional regulatory protein srrA [Bacillus mycoides
Rock3-17]
gi|228763006|gb|EEM11916.1| Transcriptional regulatory protein srrA [Bacillus mycoides
Rock3-17]
Length = 247
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A +K + + L+L DI+MP DGIE
Sbjct: 15 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEKALQNDYDLILLDIMMPGKDGIE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + + KPF R++V V +L
Sbjct: 75 VCKGIREK-KATPIIMLTAKGEEVNRVQGFEVGSDDYIVKPFSPREVVLRVKAVLRR 130
>gi|91794040|ref|YP_563691.1| phosphate regulon transcriptional regulatory protein phoB
[Shewanella denitrificans OS217]
gi|91716042|gb|ABE55968.1| two component transcriptional regulator, winged helix family
[Shewanella denitrificans OS217]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R LI + + G+ V+ + SA ++E L+L D + P
Sbjct: 1 MTARILIVEDESAIREMLIFVMEQHGFTTVAAEDFDSAIGLLQEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R + + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDKFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|308188627|ref|YP_003932758.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
gi|308059137|gb|ADO11309.1| Transcriptional regulatory protein srrA [Pantoea vagans C9-1]
Length = 232
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EVV ++G A + + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLL-DNSIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|330817959|ref|YP_004361664.1| Putative two-component system, response regulator [Burkholderia
gladioli BSR3]
gi|327370352|gb|AEA61708.1| Putative two-component system, response regulator [Burkholderia
gladioli BSR3]
Length = 241
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ A+ ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|289578186|ref|YP_003476813.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|289527899|gb|ADD02251.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + + L + G+ V++ NG + D ++E +L++ D+++P +
Sbjct: 1 MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|218232857|ref|YP_002365106.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|229148674|ref|ZP_04276925.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
gi|218160814|gb|ACK60806.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228634796|gb|EEK91374.1| hypothetical protein bcere0011_2470 [Bacillus cereus m1550]
Length = 237
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|317968518|ref|ZP_07969908.1| two-component system response regulator [Synechococcus sp. CB0205]
Length = 268
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++ +D+ +RR L+ L AGY+VV +G A +E L++ D+++P++DG
Sbjct: 24 TVMVVDDEPAVRRVLVMRLQLAGYQVVCAEDGEEALALFHKEQPDLVVLDVMLPKLDGFA 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A+A L KPF ++L + +L
Sbjct: 84 VCRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 139
>gi|289579246|ref|YP_003477873.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|289528959|gb|ADD03311.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KI + +D+ + + L + G+ V++ NG + D ++E L++ D+++P +
Sbjct: 1 MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
Query: 121 KN 122
N
Sbjct: 120 TN 121
>gi|289178438|gb|ADC85684.1| Two-component response regulator [Bifidobacterium animalis subsp.
lactis BB-12]
Length = 250
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AGYEV + +G+ A + + +++ D+++
Sbjct: 6 MSKATEATIVVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVML 65
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+F+T ++KPF L ++V +
Sbjct: 66 PDIDGFTVTRRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125
Query: 117 LLTI 120
+L
Sbjct: 126 ILRR 129
>gi|254506701|ref|ZP_05118841.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus 16]
gi|323499854|ref|ZP_08104813.1| response regulator [Vibrio sinaloensis DSM 21326]
gi|219550282|gb|EED27267.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus 16]
gi|323315095|gb|EGA68147.1| response regulator [Vibrio sinaloensis DSM 21326]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|158321804|ref|YP_001514311.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158142003|gb|ABW20315.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + + L K GY+V+ +G +K L+L D+++P++D
Sbjct: 1 MAKNILIVEDEKPISDIVRFNLEKEGYKVLVAYDGEDGVNKALTLNPDLVLLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + ++ +T ++KPF +R+L+ V L
Sbjct: 61 GFQVCRKIRA-SSSVPILMLTAKEEEVDKVLGLEMGADDYITKPFGMRELLARVKANLRR 119
>gi|289450569|ref|YP_003475161.1| response regulator receiver domain-containing protein
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185116|gb|ADC91541.1| response regulator receiver domain protein [Clostridiales genomosp.
BVAB3 str. UPII9-5]
Length = 232
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD + L G++ S NG+ A + + L++ D++MPE
Sbjct: 1 MAKGPHILICDDDPVVHESLSLYFDNEGFKHSSAYNGSEAIEHFHSDNPDLIVLDMMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G+++ R + ++ ++ +T + ++KPF +R++V + +L
Sbjct: 61 MNGVDVCREIRRM-SNVPIIMLTAKSEEIDKVVCLEIGADDYITKPFSVREVVARIKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|256826677|ref|YP_003150636.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
gi|256582820|gb|ACU93954.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ +IL+ +D+ + F+ AL K +E +NG A + ++ + L + DI++P
Sbjct: 1 MNEKPSRILVVDDEQTITDFVSYALQKENFESDVVHNGEDALEAAKKTDYDLFILDIMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG EL RR V+F++ LSKPF LR+L+ V L
Sbjct: 61 GMDGYELCRRLRSFTS-APVLFLSARDTELDKVVGLEIGGDDYLSKPFGLRELIARVRAL 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|254415706|ref|ZP_05029464.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196177412|gb|EDX72418.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 236
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ + + L + G+ SC +G +A + + +++ D+++P +DG+E+
Sbjct: 3 ILIVEDEAEIAKLIQLTLEREGFTCYSCRDGLAAIQAFQSQQPDVIILDLMLPGLDGLEV 62
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D ++ +T + L KPF +LV V LL
Sbjct: 63 CARIRQKPGPKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPTELVARVRALLRR 120
>gi|153939281|ref|YP_001392698.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152935177|gb|ABS40675.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295320679|gb|ADG01057.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 230
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + FL L K GYEV NG A +K+ E F L+L DI+MP++D
Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R L ++ ++F+T ++KPF L +L ++ +L
Sbjct: 61 GFEAIKRIRRLT-NIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKR 119
>gi|28210332|ref|NP_781276.1| two-component response regulator [Clostridium tetani E88]
gi|28202769|gb|AAO35213.1| two-component response regulator [Clostridium tetani E88]
Length = 234
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD+++ + + + K GYEV+ + G Y++ + E FSLL+ DI+MPEMD
Sbjct: 1 MKERILIVEDDEEIALCIKEYVEKTGYEVLWASTGKEGYEEFKRENFSLLMIDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + L D+ ++ I+ ++KPF L +L + L
Sbjct: 61 GLTLCKNIR-LTSDVPILIISAKNEDGYKVKGLNIGADDYITKPFSLVELQARLESHLRR 119
>gi|28897343|ref|NP_796948.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
2210633]
gi|153838075|ref|ZP_01990742.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AQ3810]
gi|260364511|ref|ZP_05777132.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus K5030]
gi|260876305|ref|ZP_05888660.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AN-5034]
gi|260898576|ref|ZP_05907072.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus Peru-466]
gi|260903268|ref|ZP_05911663.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AQ4037]
gi|28805552|dbj|BAC58832.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus RIMD
2210633]
gi|149748542|gb|EDM59401.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AQ3810]
gi|308086888|gb|EFO36583.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus Peru-466]
gi|308092989|gb|EFO42684.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AN-5034]
gi|308107972|gb|EFO45512.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus AQ4037]
gi|308114699|gb|EFO52239.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
parahaemolyticus K5030]
gi|328472632|gb|EGF43495.1| DNA-binding response regulator PhoB [Vibrio parahaemolyticus 10329]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + +A K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDTAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|318042861|ref|ZP_07974817.1| two-component system response regulator [Synechococcus sp. CB0101]
Length = 269
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +RR L+ L AGY VV +G A +E L++ D+++P++DG
Sbjct: 25 TLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFA 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A+A L KPF ++L + +L
Sbjct: 85 VCRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140
>gi|312792508|ref|YP_004025431.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179648|gb|ADQ39818.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G
Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R+ + ++ ++ +T + ++KPF + +L+ + L
Sbjct: 63 IEICRKIRQ-HSNVPIIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119
>gi|331656451|ref|ZP_08357413.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA206]
gi|315299630|gb|EFU58878.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli MS 16-3]
gi|331054699|gb|EGI26708.1| phosphate regulon transcriptional regulatory protein PhoB
[Escherichia coli TA206]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T + KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYIIKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|288555847|ref|YP_003427782.1| winged helix family two component transcriptional regulator
[Bacillus pseudofirmus OF4]
gi|288547007|gb|ADC50890.1| two component transcriptional regulator, winged helix family
protein [Bacillus pseudofirmus OF4]
Length = 231
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ M+R L L K G+E ++ ++G A + L + D++MP MDG +
Sbjct: 3 TILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E L V+F+T + + LSKPF +L+ + +L
Sbjct: 63 FVKKLRE-TSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRR 118
>gi|163802439|ref|ZP_02196332.1| recombination associated protein [Vibrio sp. AND4]
gi|159173740|gb|EDP58555.1| recombination associated protein [Vibrio sp. AND4]
Length = 229
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAVTKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI + EL ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINFIKHMKREELTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|53725149|ref|YP_102516.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
23344]
gi|67639865|ref|ZP_00438695.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
4]
gi|121599948|ref|YP_992333.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
gi|124384760|ref|YP_001028967.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
10229]
gi|126449935|ref|YP_001081118.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
10247]
gi|166999933|ref|ZP_02265762.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
gi|254177571|ref|ZP_04884226.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
10399]
gi|254199424|ref|ZP_04905790.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
gi|254205739|ref|ZP_04912091.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
gi|254357895|ref|ZP_04974168.1| DNA-binding response regulator OmpR [Burkholderia mallei
2002721280]
gi|52428572|gb|AAU49165.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
23344]
gi|121228758|gb|ABM51276.1| DNA-binding response regulator OmpR [Burkholderia mallei SAVP1]
gi|124292780|gb|ABN02049.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
10229]
gi|126242805|gb|ABO05898.1| DNA-binding response regulator OmpR [Burkholderia mallei NCTC
10247]
gi|147749020|gb|EDK56094.1| DNA-binding response regulator OmpR [Burkholderia mallei FMH]
gi|147753182|gb|EDK60247.1| DNA-binding response regulator OmpR [Burkholderia mallei JHU]
gi|148027022|gb|EDK85043.1| DNA-binding response regulator OmpR [Burkholderia mallei
2002721280]
gi|160698610|gb|EDP88580.1| DNA-binding response regulator OmpR [Burkholderia mallei ATCC
10399]
gi|238520472|gb|EEP83932.1| DNA-binding response regulator OmpR [Burkholderia mallei GB8 horse
4]
gi|243064054|gb|EES46240.1| DNA-binding response regulator OmpR [Burkholderia mallei PRL-20]
Length = 232
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTVLRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|325067651|ref|ZP_08126324.1| two-component system response regulator [Actinomyces oris K20]
gi|326772054|ref|ZP_08231339.1| DNA-binding response regulator [Actinomyces viscosus C505]
gi|326638187|gb|EGE39088.1| DNA-binding response regulator [Actinomyces viscosus C505]
Length = 226
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L Y C++GA A D E L+L D+++P +D
Sbjct: 1 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVNPDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R D+ ++ +T ++KPF ++L+ V+ L
Sbjct: 61 GVEICRLIRSE-SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 119
Query: 121 KN 122
N
Sbjct: 120 TN 121
>gi|16078390|ref|NP_389208.1| two-component response regulator YkoH [Bacillus subtilis subsp.
subtilis str. 168]
gi|221309187|ref|ZP_03591034.1| hypothetical protein Bsubs1_07341 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313513|ref|ZP_03595318.1| hypothetical protein BsubsN3_07282 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318435|ref|ZP_03599729.1| hypothetical protein BsubsJ_07216 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322709|ref|ZP_03604003.1| hypothetical protein BsubsS_07327 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|23396975|sp|O34903|YKOG_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
ykoG
gi|2632045|emb|CAA05604.1| YkoG [Bacillus subtilis]
gi|2633679|emb|CAB13182.1| two-component response regulator [YkoH] [Bacillus subtilis subsp.
subtilis str. 168]
gi|291483853|dbj|BAI84928.1| hypothetical protein BSNT_02229 [Bacillus subtilis subsp. natto
BEST195]
Length = 228
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ ED++ + R L L GY V +NG D E +SL+L D+++P +
Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + D V+ +T ++ ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120
>gi|53718676|ref|YP_107662.1| putative two-component system, response regulator [Burkholderia
pseudomallei K96243]
gi|76812145|ref|YP_332663.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
1710b]
gi|126441195|ref|YP_001058144.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
gi|126452418|ref|YP_001065379.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|134281110|ref|ZP_01767819.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
gi|167823237|ref|ZP_02454708.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 9]
gi|167851424|ref|ZP_02476932.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
B7210]
gi|167900223|ref|ZP_02487624.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
7894]
gi|167916733|ref|ZP_02503824.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 112]
gi|167918062|ref|ZP_02505153.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
BCC215]
gi|217419788|ref|ZP_03451294.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|226194482|ref|ZP_03790080.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
9]
gi|237811364|ref|YP_002895815.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
MSHR346]
gi|242317517|ref|ZP_04816533.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
gi|254181365|ref|ZP_04887962.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
gi|254190765|ref|ZP_04897272.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
52237]
gi|254196970|ref|ZP_04903394.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
gi|254260088|ref|ZP_04951142.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
gi|254298308|ref|ZP_04965760.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
gi|52209090|emb|CAH35031.1| putative two-component system, response regulator [Burkholderia
pseudomallei K96243]
gi|76581598|gb|ABA51073.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
1710b]
gi|126220688|gb|ABN84194.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
gi|126226060|gb|ABN89600.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|134247416|gb|EBA47501.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei 305]
gi|157808251|gb|EDO85421.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
gi|157938440|gb|EDO94110.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
52237]
gi|169653713|gb|EDS86406.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
gi|184211903|gb|EDU08946.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
gi|217397092|gb|EEC37108.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|225933567|gb|EEH29556.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
9]
gi|237503023|gb|ACQ95341.1| DNA-binding response regulator OmpR [Burkholderia pseudomallei
MSHR346]
gi|242140756|gb|EES27158.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
gi|254218777|gb|EET08161.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
Length = 241
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|325663166|ref|ZP_08151616.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470620|gb|EGC73850.1| hypothetical protein HMPREF0490_02357 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 241
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLLKECFDTMMVHDGEEALAAFDSYSPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SDTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|158339404|ref|YP_001520581.1| two component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158309645|gb|ABW31262.1| two component transcriptional regulator, winged helix family
[Acaryochloris marina MBIC11017]
Length = 238
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ + + L G+ + +NGA A V L++ D+++P +D
Sbjct: 1 MKPTILIVEDEKEIAQLVRNMLETEGFICETLSNGADALRVVTVLQPDLVILDLMLPGLD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + D ++ +T A L+KPF R+L+ V LL
Sbjct: 61 GLEVCTRIRQQSLAKDPYILMLTARAEELDRIIGLTTGADDYLTKPFSPRELIARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|258620420|ref|ZP_05715458.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
gi|258626035|ref|ZP_05720891.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
gi|262166718|ref|ZP_06034455.1| DNA-binding response regulator [Vibrio mimicus VM223]
gi|262170359|ref|ZP_06038037.1| DNA-binding response regulator [Vibrio mimicus MB-451]
gi|297581549|ref|ZP_06943472.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
gi|258581686|gb|EEW06579.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM603]
gi|258587299|gb|EEW12010.1| Transcriptional regulatory protein ompR [Vibrio mimicus VM573]
gi|261891435|gb|EEY37421.1| DNA-binding response regulator [Vibrio mimicus MB-451]
gi|262026434|gb|EEY45102.1| DNA-binding response regulator [Vibrio mimicus VM223]
gi|297534387|gb|EFH73225.1| transcriptional regulator OmpR [Vibrio cholerae RC385]
Length = 240
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|315304718|ref|ZP_07874912.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria ivanovii FSL F6-596]
gi|313626910|gb|EFR95849.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria ivanovii FSL F6-596]
Length = 236
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGKAGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQNKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|229095303|ref|ZP_04226295.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|228688162|gb|EEL42048.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 242
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 21 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 81 CKKIRS-FSNIPIIMVTARDQTVAVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 137
>gi|254432753|ref|ZP_05046456.1| two-component response regulator [Cyanobium sp. PCC 7001]
gi|197627206|gb|EDY39765.1| two-component response regulator [Cyanobium sp. PCC 7001]
Length = 240
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+I + +DD ++R+ L + LG GYEV NG ++ + L++ D+++P DG+
Sbjct: 5 HRIWVVDDDPELRQMLQRYLGDQGYEVRCLANGQQLTARLESQRPDLVVLDLMLPGDDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + DL V+ +TG L+KPF R+L + +L +
Sbjct: 65 CLLRRLRDGGDDLPVLMLTGKGDAVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRR 123
>gi|291326977|ref|ZP_06574149.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
1131]
gi|291312096|gb|EFE52549.1| transcriptional regulatory protein OmpR [Providencia rettgeri DSM
1131]
Length = 249
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 14 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 74 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 133
>gi|183597003|ref|ZP_02958496.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
gi|188023658|gb|EDU61698.1| hypothetical protein PROSTU_00234 [Providencia stuartii ATCC 25827]
Length = 239
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 4 SYKVLVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRILTRESIHLIVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|160893495|ref|ZP_02074280.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
gi|156864890|gb|EDO58321.1| hypothetical protein CLOL250_01046 [Clostridium sp. L2-50]
Length = 227
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 64/122 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ ED++ + RF+ L GYEV+ +G + D E L++ D+++P ++
Sbjct: 1 MSRKILIVEDEEKIARFVELELVHEGYEVIKAFDGRTGLDLALSEHADLIVLDVMLPRLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ ++ +T AV ++KPF + +L+ + L
Sbjct: 61 GLEVLRRIRKEGNNVPILLLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRVALKR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|125974351|ref|YP_001038261.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256005570|ref|ZP_05430530.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281418898|ref|ZP_06249916.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|125714576|gb|ABN53068.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|255990478|gb|EEU00600.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281407355|gb|EFB37615.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|316941509|gb|ADU75543.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 234
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ +D+ + + L +GYEV G A + P SL++ D+++P++ G
Sbjct: 5 SKKILVVDDEKKIVEVVKSYLEHSGYEVYEAFTGKEALYVFEKVPLSLIVLDLMLPDLSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ +T A ++KPF + LV V +L
Sbjct: 65 EEICKIIRKK-SRVPIIMLTAKAEEEDILKGLNIGADDYITKPFSPKQLVARVTAVLRR 122
>gi|322391842|ref|ZP_08065307.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
gi|321145322|gb|EFX40718.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
Length = 234
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|49480229|ref|YP_034909.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49331785|gb|AAT62431.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 225
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|253577429|ref|ZP_04854745.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843229|gb|EES71261.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 228
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M Q KILL +D+ + +FL L G+EV + +G +A E +++ D++M
Sbjct: 1 MKQVKGAKILLVDDEPHIVQFLELGLQNEGFEVRTAGDGMTAVAIAAEFQPHVIVLDVMM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG E+ R + ++ ++ +T V + KPF +L+ +
Sbjct: 61 PGMDGFEVCRLLRKNGENVSIIMLTAKDEVEDRVKGLTIGADDYVVKPFSFEELLARIGA 120
Query: 117 LLTIK 121
L +
Sbjct: 121 RLRNQ 125
>gi|229167840|ref|ZP_04295572.1| Two-component response regulator [Bacillus cereus AH621]
gi|228615656|gb|EEK72749.1| Two-component response regulator [Bacillus cereus AH621]
Length = 228
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|198274194|ref|ZP_03206726.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
gi|198272869|gb|EDY97138.1| hypothetical protein BACPLE_00334 [Bacteroides plebeius DSM 17135]
Length = 1312
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+R ++ + + YEV++ NG +D + + +++++DI+MP MDGIEL
Sbjct: 1057 ILVVEDNRDIREYVRSSFEEM-YEVLTAANGKEGWDIAQSQIPNIIISDIMMPVMDGIEL 1115
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E + V+ +T + + A ++KPF R L + +N +L +
Sbjct: 1116 CRHIKEDMRTSHIPVILLTAKDTLQDKEEGYAAGADSFITKPFSARLLNSRINNILENR 1174
>gi|147668884|ref|YP_001213702.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
gi|146269832|gb|ABQ16824.1| two component transcriptional regulator, winged helix family
[Dehalococcoides sp. BAV1]
Length = 230
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD +R L L K GY++ +G A R +L++ D+++P +DG
Sbjct: 4 HKILVVEDDATLRELLCYNLAKEGYQLECAEDGLKALSVYRLFKPALVILDVMIPGIDGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + ++ +T ++ A + LSKPF +++L+ + LL
Sbjct: 64 ELCRLIRAE-SSVPILMLTARSSEADKVNGLEAGADDYLSKPFGMKELLARMRALLRR 120
>gi|312864518|ref|ZP_07724749.1| transcriptional regulatory protein WalR [Streptococcus downei
F0415]
gi|311099645|gb|EFQ57858.1| transcriptional regulatory protein WalR [Streptococcus downei
F0415]
Length = 235
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L K GYEVV+ +G A + +E L++ D ++PE++G+
Sbjct: 2 KKVLVVDDEKPISDIIKFNLIKEGYEVVTAFDGKEALKQFEDENPDLIILDWMLPELEGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ + L
Sbjct: 62 EVAKEIRK-SSHVPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARIKAHLRR 118
>gi|229524692|ref|ZP_04414097.1| two-component system response regulator OmpR [Vibrio cholerae bv.
albensis VL426]
gi|229338273|gb|EEO03290.1| two-component system response regulator OmpR [Vibrio cholerae bv.
albensis VL426]
Length = 240
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|153002704|ref|YP_001368385.1| osmolarity response regulator [Shewanella baltica OS185]
gi|160877440|ref|YP_001556756.1| osmolarity response regulator [Shewanella baltica OS195]
gi|217975277|ref|YP_002360028.1| osmolarity response regulator [Shewanella baltica OS223]
gi|304412087|ref|ZP_07393697.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|307305982|ref|ZP_07585728.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|151367322|gb|ABS10322.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS185]
gi|160862962|gb|ABX51496.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS195]
gi|217500412|gb|ACK48605.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS223]
gi|304349637|gb|EFM14045.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|306911475|gb|EFN41901.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|315269642|gb|ADT96495.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS678]
Length = 241
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|88855607|ref|ZP_01130270.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
gi|88814931|gb|EAR24790.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
Length = 226
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +DD + + L GYE C +GA A D + L+L D+++P MD
Sbjct: 1 MNPRILVVDDDTALAEMIGIVLRTEGYEPFFCQDGALALDAFKSAAPDLVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R E + ++ +T + A + KPF+ ++LV V L
Sbjct: 61 GIEICARIREE-SGVPIIMLTAKSDTADVVKGLESGADDYVVKPFNPKELVARVRTRLR 118
>gi|205372167|ref|ZP_03224982.1| two component transcriptional regulator [Bacillus coahuilensis
m4-4]
Length = 225
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD +R + L K GY V N+G A + ++ L L D++MP +G E
Sbjct: 3 TILVADDDQFIRELITLYLKKEGYTVFEANDGEEASSILSQQTIHLCLIDVMMPNKNGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R +L DL ++ +T +SKPF +L+ V LL
Sbjct: 63 LCREIRDLY-DLPILMVTAKGESEDKIKGFQQGTDDYISKPFDPHELIMRVKALLRR 118
>gi|167561993|ref|ZP_02354909.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
EO147]
gi|167569245|ref|ZP_02362119.1| DNA-binding response regulator OmpR [Burkholderia oklahomensis
C6786]
Length = 241
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|127514565|ref|YP_001095762.1| osmolarity response regulator [Shewanella loihica PV-4]
gi|126639860|gb|ABO25503.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 241
Score = 153 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQNGNTIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|253990976|ref|YP_003042332.1| phosphate regulon transcriptional regulatory protein phob
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253782426|emb|CAQ85590.1| phosphate regulon transcriptional regulatory protein phob
[Photorhabdus asymbiotica]
Length = 229
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L K GY+ V + SA + E L+L D ++P
Sbjct: 1 MTRRILVVEDETPIREMVCFVLEKNGYQPVEAEDYDSALACLSEPYPDLVLLDWMIPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ ++ + D+ VM +T ++KPF ++LV V +L
Sbjct: 61 GLQIIKQMKRDNNVRDIPVMMLTARGEEEDRVRGLEIGADDYITKPFSPKELVARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|297191203|ref|ZP_06908601.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|197718520|gb|EDY62428.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 244
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + + L +AG+ V +G A L++ D+++P MDG+E+
Sbjct: 15 ILVVDDDPTVAEVVTGYLERAGFAVDRAADGPQALRLAAGRRPDLVVLDLMLPGMDGLEV 74
Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR + V+ +T ++KPF R+LV V +L
Sbjct: 75 CRRLRAGEQARVPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVL 129
>gi|307592311|ref|YP_003899902.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306985956|gb|ADN17836.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 1403
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ DMR +L + L + YEV + +G +A + L+LTD++MP +DG E
Sbjct: 629 RILIADDNADMRDYLKRLLSQQ-YEVEAVVDGLTALKAIHSCHPDLVLTDVMMPGLDGFE 687
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ ++ A + L KPF R+L+ V L +
Sbjct: 688 LLKSLRADLSTQHIPIILLSARAGEESRVEGLEAGADDYLIKPFSARELLARVEATLKL 746
Score = 112 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 5/115 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+D R FL AL ++G V + + + A + +++++D+ MP+MDG L
Sbjct: 1279 ILVVDDDEDTRYFLAFALQQSGATVTTVGSASEALQVLVRSAPNVIVSDVGMPDMDGYML 1338
Query: 65 ARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++ L+ +K + +T +A + + + KP + L+ +
Sbjct: 1339 IQQIRMLEAQQGREKIKAIALTAYAGEIDRQQALREGFQRHIIKPINPSVLIKTI 1393
>gi|88799154|ref|ZP_01114734.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
sp. MED297]
gi|88778137|gb|EAR09332.1| phosphate regulon transcriptional regulatory protein PhoB [Reinekea
sp. MED297]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + IL+ +D+ +R + AL AGY + +N A+ V ++ L+L D +MP++
Sbjct: 6 MSSRSILIVDDEAPIREVIAAALEMAGYRTLEASNAQDAHSIVVDQKPDLILLDWMMPQV 65
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E ARR L ++ ++ +T ++KPF R+LV + +
Sbjct: 66 SGVEFARRLKRDPLTAEIPIIMLTAKGEEDHKITGLEAGADDYITKPFSPRELVARLKAV 125
Query: 118 LTI 120
L
Sbjct: 126 LRR 128
>gi|152966980|ref|YP_001362764.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
gi|151361497|gb|ABS04500.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
Length = 273
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L L G+EV + NG A R ++ DI++P++DG+E
Sbjct: 42 RVLVVDDESTLSELLSMTLRYEGWEVQTAGNGLDAVRAARSFRPDAVILDIMLPDIDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D+ V+F+T AV ++KPF L ++V + LL
Sbjct: 102 VLRRLRADATDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRSLLRR 158
>gi|47568103|ref|ZP_00238808.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
gi|47555257|gb|EAL13603.1| DNA-binding response regulator RegX3 [Bacillus cereus G9241]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|325982918|ref|YP_004295320.1| two component transcriptional regulator PhoB, winged helix family
[Nitrosomonas sp. AL212]
gi|325532437|gb|ADZ27158.1| two component transcriptional regulator PhoB, winged helix family
[Nitrosomonas sp. AL212]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R + L +AGYE + + A + + L+L D ++P M
Sbjct: 1 MSAKILIVEDEAAIRELIAYNLQQAGYESICAEDAEKAMTIIHDALPDLILLDWMLPNMT 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ AR + + ++ +T A ++KPF R+L+ +N +L
Sbjct: 61 GIDFARLLRRNERTRIIPIIMLTARTQEADKVAGLEIGADDYVTKPFSPRELIARINAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|163940843|ref|YP_001645727.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163863040|gb|ABY44099.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 228
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|317129755|ref|YP_004096037.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315474703|gb|ADU31306.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 230
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL +D+ +MR+ L L Y + +NG A DK+ + + L+L DI+MPE+D
Sbjct: 1 MNDRILLVDDEQEMRKLLRVCLTPYSYLLDEASNGEEAIDKISADFYDLILLDIMMPEVD 60
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL + E LD V+ +T + L KPF ++L V ++
Sbjct: 61 GFELLKTLREHLDNKTPVILLTALGDTERIVEGLKLGADDYLVKPFEPKELAARVESVIR 120
Query: 120 I-KN 122
KN
Sbjct: 121 RTKN 124
>gi|229171119|ref|ZP_04298714.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
gi|228612357|gb|EEK69584.1| hypothetical protein bcere0006_2500 [Bacillus cereus MM3]
Length = 237
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAVNGEEALQLFNQNNYNLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|163941207|ref|YP_001646091.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163863404|gb|ABY44463.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|229191197|ref|ZP_04318186.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
gi|228592347|gb|EEK50177.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP++
Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+AR+ + ++ ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVARQIR-IKHNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFSPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|217970660|ref|YP_002355894.1| osmolarity response regulator [Thauera sp. MZ1T]
gi|217507987|gb|ACK54998.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
Length = 257
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MNQ +IL+ +DD +R L + L + G+ V + + + E + L++ D+++
Sbjct: 1 MNQKNRYRILVVDDDARLRELLSRYLQEQGFSVKAVGDAPMMDRALHREHYDLIVLDLML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DG+ + RR + + V+ +T ++KPF+ R+LV +
Sbjct: 61 PGEDGLSICRRLRAAENQIPVIMLTAKGDDVDRIVGLEMGADDYVAKPFNPRELVARIQA 120
Query: 117 LLTIK 121
++ +
Sbjct: 121 VMRRQ 125
>gi|119490790|ref|ZP_01623122.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119453774|gb|EAW34932.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 1111
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
KIL+ +D+ + + L Y + NG A + + L+L D++MP M G
Sbjct: 717 KILVVDDEPVNIQVIANNLSLQNYAITQATNGLEALTLIEKGFKPDLILLDVMMPRMTGY 776
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ E L +L ++ +T V D + LSKPF ++L+ + L +
Sbjct: 777 EVCQKLREKYLHSELPILMLTAKNQVTDLVDGLSSGANDYLSKPFSKQELLARIKTHLRL 836
>gi|219848261|ref|YP_002462694.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219542520|gb|ACL24258.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ +L + L GY V +G + + L++ D+++P +DG E
Sbjct: 3 RILIIEDETEIASYLRRGLSLEGYHVDVAFDGLQGLEMASTGNYDLVVLDLMLPVIDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ARR ++ ++ +T AV L KPF +L+ + L +
Sbjct: 63 VARRIRAA-SNVPIIMLTARDAVRDRVAGLEAGADDYLVKPFAFEELLARIRAQLRRQ 119
>gi|86605502|ref|YP_474265.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86554044|gb|ABC99002.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 245
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L +G+EV+ N A + L+++DI+MP MDG +
Sbjct: 17 RILLVDDEPGLREAVQAYLEDSGFEVIPAANAQQALQLLSTTQPQLIISDIMMPGMDGYQ 76
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +LDP L V+F+T A L KPF +LV V+ L+
Sbjct: 77 FLAQVRKLDPYSHLPVVFLTAKGMTADRIQGYRAGVDAYLPKPFDPEELVAIVSNLIER 135
>gi|134300477|ref|YP_001113973.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134053177|gb|ABO51148.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 239
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDG 61
QKIL+ ED++ +R F+ L + G++ V +G A +KV + P ++ L D+++P +DG
Sbjct: 2 QKILVLEDEESIRSFIRVNLKRNGFQAVEACSGEEALEKVEQAGPITVALLDVMLPGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R E P L ++ +T A + KPF ++L+ +N L+
Sbjct: 62 FEVCRILKERYPGLGIIMLTAKGQEADKVSGLVLGADDYVVKPFSPKELIARINALIRR 120
>gi|229012380|ref|ZP_04169557.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|228749016|gb|EEL98864.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 228
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|227504192|ref|ZP_03934241.1| response regulator [Corynebacterium striatum ATCC 6940]
gi|227199236|gb|EEI79284.1| response regulator [Corynebacterium striatum ATCC 6940]
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L ++L GY+V+ ++G A + VR E LL+ D++MP MDG+E
Sbjct: 2 KILVVDDEQAVRESLRRSLRFNGYDVLIASDGVEAVETVRSENPELLILDVMMPNMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T V+ L KPF L +L+ V L+
Sbjct: 62 VCRTLRSEGWDRSILVLTARDGVSDRVAGLDAGADDYLPKPFALEELLARVRSLVRR 118
>gi|116073933|ref|ZP_01471195.1| two-component response regulator [Synechococcus sp. RS9916]
gi|116069238|gb|EAU74990.1| two-component response regulator [Synechococcus sp. RS9916]
Length = 248
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ RR L L GY V++ +G A + R L++ D++MP++DG
Sbjct: 8 KETILVVDDEASSRRILETRLSMIGYNVITACDGNEALECFRNVEPDLVVLDVMMPKLDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T VA + KPF ++L + +L
Sbjct: 68 YGVCQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|86609935|ref|YP_478697.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558477|gb|ABD03434.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 233
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMD 60
+ILL +D+ ++ L + L + GY V G A++ +++ P++LL+ D ++PE+
Sbjct: 3 RILLVDDEVELADSLAQQLRREGYTVDVAYTGGRAWELLQKTGSLPYNLLVLDWMLPELS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L +R ++D ++F+T + + L KPF LR+L+ V LL
Sbjct: 63 GLSLCQRVRQVDCTTPILFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 122
>gi|15640738|ref|NP_230368.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121590901|ref|ZP_01678224.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
gi|121728615|ref|ZP_01681635.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
gi|147674650|ref|YP_001216209.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
gi|153216130|ref|ZP_01950285.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
gi|153803530|ref|ZP_01958116.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
gi|153818850|ref|ZP_01971517.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
gi|153823136|ref|ZP_01975803.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
gi|153827132|ref|ZP_01979799.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MZO-2]
gi|153831184|ref|ZP_01983851.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
gi|227080898|ref|YP_002809449.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
gi|229505665|ref|ZP_04395175.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae BX 330286]
gi|229510663|ref|ZP_04400142.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae B33]
gi|229513140|ref|ZP_04402606.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae TMA 21]
gi|229517785|ref|ZP_04407229.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae RC9]
gi|229523456|ref|ZP_04412863.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae TM 11079-80]
gi|229525367|ref|ZP_04414772.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae bv. albensis VL426]
gi|229530150|ref|ZP_04419540.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae 12129(1)]
gi|229608683|ref|YP_002879331.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MJ-1236]
gi|254224992|ref|ZP_04918606.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
gi|254285442|ref|ZP_04960406.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
gi|254847860|ref|ZP_05237210.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
gi|255744531|ref|ZP_05418482.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholera CIRS 101]
gi|258623634|ref|ZP_05718625.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
gi|258626940|ref|ZP_05721742.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
gi|262161335|ref|ZP_06030446.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae INDRE 91/1]
gi|262168827|ref|ZP_06036522.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae RC27]
gi|262172206|ref|ZP_06039884.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
mimicus MB-451]
gi|297581122|ref|ZP_06943046.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
gi|298499143|ref|ZP_07008950.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MAK 757]
gi|9655162|gb|AAF93884.1| DNA-binding response regulator PhoB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|99031006|gb|ABF61789.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
gi|121547266|gb|EAX57389.1| DNA-binding response regulator PhoB [Vibrio cholerae 2740-80]
gi|121629123|gb|EAX61567.1| DNA-binding response regulator PhoB [Vibrio cholerae V52]
gi|124114445|gb|EAY33265.1| DNA-binding response regulator PhoB [Vibrio cholerae 1587]
gi|124120940|gb|EAY39683.1| DNA-binding response regulator PhoB [Vibrio cholerae MZO-3]
gi|125622379|gb|EAZ50699.1| DNA-binding response regulator PhoB [Vibrio cholerae V51]
gi|126510632|gb|EAZ73226.1| DNA-binding response regulator PhoB [Vibrio cholerae NCTC 8457]
gi|126519353|gb|EAZ76576.1| DNA-binding response regulator PhoB [Vibrio cholerae B33]
gi|146316533|gb|ABQ21072.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
gi|148873340|gb|EDL71475.1| DNA-binding response regulator PhoB [Vibrio cholerae 623-39]
gi|149738998|gb|EDM53310.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MZO-2]
gi|150424304|gb|EDN16241.1| DNA-binding response regulator PhoB [Vibrio cholerae AM-19226]
gi|227008786|gb|ACP04998.1| DNA-binding response regulator PhoB [Vibrio cholerae M66-2]
gi|227012543|gb|ACP08753.1| DNA-binding response regulator PhoB [Vibrio cholerae O395]
gi|229333924|gb|EEN99410.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae 12129(1)]
gi|229338948|gb|EEO03965.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae bv. albensis VL426]
gi|229339819|gb|EEO04834.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae TM 11079-80]
gi|229344500|gb|EEO09474.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae RC9]
gi|229350033|gb|EEO14987.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae TMA 21]
gi|229350628|gb|EEO15569.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae B33]
gi|229357888|gb|EEO22805.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae BX 330286]
gi|229371338|gb|ACQ61761.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MJ-1236]
gi|254843565|gb|EET21979.1| DNA-binding response regulator PhoB [Vibrio cholerae MO10]
gi|255737562|gb|EET92956.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholera CIRS 101]
gi|258580764|gb|EEW05711.1| DNA-binding response regulator PhoB [Vibrio mimicus VM603]
gi|258584085|gb|EEW08843.1| DNA-binding response regulator PhoB [Vibrio mimicus VM573]
gi|261893282|gb|EEY39268.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
mimicus MB-451]
gi|262022945|gb|EEY41651.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae RC27]
gi|262029085|gb|EEY47738.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae INDRE 91/1]
gi|297534438|gb|EFH73275.1| DNA-binding response regulator PhoB [Vibrio cholerae RC385]
gi|297543476|gb|EFH79526.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
cholerae MAK 757]
gi|327483513|gb|AEA77920.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Vibrio cholerae LMA3894-4]
Length = 229
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E+ ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|298249773|ref|ZP_06973577.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297547777|gb|EFH81644.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED++D+ + +++ L AGYEV +G A D ++L D ++P ++G+
Sbjct: 11 EKILLVEDENDLAKIVMRELRGAGYEVFHAEDGLKALDLHERHQPDVVLLDWMLPRLNGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + V+ +T + A L+KPF +R+LV V LL
Sbjct: 71 EVLRRLRQ-SSATPVLMLTARSEEADRVIGLEIGADDYLTKPFSMRELVARVRALLRR 127
>gi|153825536|ref|ZP_01978203.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
gi|153828342|ref|ZP_01981009.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
gi|261211276|ref|ZP_05925565.1| DNA-binding response regulator [Vibrio sp. RC341]
gi|148876172|gb|EDL74307.1| transcriptional regulator OmpR [Vibrio cholerae 623-39]
gi|149740821|gb|EDM54912.1| transcriptional regulator OmpR [Vibrio cholerae MZO-2]
gi|260839777|gb|EEX66388.1| DNA-binding response regulator [Vibrio sp. RC341]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|28377603|ref|NP_784495.1| response regulator [Lactobacillus plantarum WCFS1]
gi|254555781|ref|YP_003062198.1| response regulator [Lactobacillus plantarum JDM1]
gi|300767564|ref|ZP_07077474.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308179756|ref|YP_003923884.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|28270436|emb|CAD63338.1| response regulator [Lactobacillus plantarum WCFS1]
gi|254044708|gb|ACT61501.1| response regulator [Lactobacillus plantarum JDM1]
gi|300494549|gb|EFK29707.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308045247|gb|ADN97790.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 242
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L L +AGYEVV+ +GA A + F+ +L D+++P++DG+E
Sbjct: 5 KILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDGME 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ +T ++KPF R+++ + ++
Sbjct: 65 VTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRR 121
>gi|332977099|gb|EGK13903.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 227
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL +D++ + +F+ L + G+++++ G+ A +K E+ +L++ D ++PEM
Sbjct: 1 MSHTLLLVDDEEQVLQFMEPFLRQEGFQILTAQTGSEALEKAGEKKPALVVLDWMLPEMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R ++ + ++ +T ++KPF LR+L + +L
Sbjct: 61 GIEVCRELRKM-SRMGIIMVTARTEETDKIIGLEVGADDYITKPFSLRELAARIRSVLRR 119
>gi|270291731|ref|ZP_06197947.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
gi|270279816|gb|EFA25657.1| DNA-binding response regulator SaeR [Streptococcus sp. M143]
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQHRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|168334600|ref|ZP_02692753.1| two component transcriptional regulator, winged helix family
protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ + + L K GYEV+ +G + + ++L DI+MP+MDG+
Sbjct: 3 KVVVVEDEKAISDIIKYNLEKEGYEVLVAYDGEEGLEMILTTNPDIVLLDIMMPKMDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ ++ +T A ++KPF +R+L+ V L
Sbjct: 63 VCKLVRK-TKNMPIIMLTAKAEEIDKVVGLELGADDYITKPFGMRELIARVKAQLRR 118
>gi|152998395|ref|YP_001343230.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150839319|gb|ABR73295.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 236
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ +R + AL AGYE + N A++ + + L+L D +MP GI
Sbjct: 9 KKVLIIDDESSIREMIAIALEMAGYEYLEAENIQQAHEIIVDHRPDLILVDWMMPGGSGI 68
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + ++ V+ +T + ++KPF R+LV + +L
Sbjct: 69 ELTRRLKKDTTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 128
>gi|116619216|ref|YP_821372.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116222378|gb|ABJ81087.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 228
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ +DD +RR + L YEV+ G A + + E +L+L D+ MP M
Sbjct: 1 MSIAKILVVDDDPQIRRVMKATLVGHSYEVIEARTGEDALEALPHEMPNLVLLDMNMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E R D+ V+ ++ + ++KPF + +L+ + L
Sbjct: 61 GGLETCRAIRS-GTDIPVIILSVRNTEKDKVAALDAGADDYVTKPFGIEELLARIRAALR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|294340410|emb|CAZ88791.1| Phosphate regulon transcriptional regulatory protein phoB
[Thiomonas sp. 3As]
Length = 244
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L AG+ + + A +R+ +LL D ++P M G+ L
Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
AR + ++ +T + ++KPF ++L+ + +L +
Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRR 125
>gi|258593741|emb|CBE70082.1| putative response regulator in two-component reguatory system,
sigma54 dependent transcriptional regulator [NC10
bacterium 'Dutch sediment']
Length = 460
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 63/116 (54%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R FL L K GY V++ ++G A + + + L+++D+ MP+MDGI
Sbjct: 2 ETILVVDDEQGIREFLTVLLEKQGYRVITASDGERALELIAHQSPDLVISDVRMPKMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + DP L V+ +T +A++ + ++KPF + ++ V + L
Sbjct: 62 GLLTGIRKTDPHLPVIMVTAYASMDSTIQAMRLGAHDYITKPFRIDEIRLVVEKAL 117
>gi|239833775|ref|ZP_04682103.1| two component response regulator [Ochrobactrum intermedium LMG
3301]
gi|239821838|gb|EEQ93407.1| two component response regulator [Ochrobactrum intermedium LMG
3301]
Length = 314
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +DD D+R L + L + G V ++G +D + L++ D+++P G
Sbjct: 80 DAHVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSG 139
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ + + ++ +T A A L+KPF R+L+ + +L
Sbjct: 140 IEICQDIR-RHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRR 197
>gi|229188543|ref|ZP_04315583.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
gi|228594937|gb|EEK52716.1| hypothetical protein bcere0002_2390 [Bacillus cereus ATCC 10876]
Length = 237
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|238789578|ref|ZP_04633362.1| Transcriptional regulator in 2-component system [Yersinia
frederiksenii ATCC 33641]
gi|238722331|gb|EEQ13987.1| Transcriptional regulator in 2-component system [Yersinia
frederiksenii ATCC 33641]
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + + + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLL-DNSIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|331002565|ref|ZP_08326081.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330408293|gb|EGG87769.1| hypothetical protein HMPREF0491_00943 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 235
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K YE +G SA E L+L D+++P +DG
Sbjct: 4 KQRILIVDDDENIAELISLYLMKECYETKIVGDGESALADFDEFKPHLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R ++ ++ V + KPF ++L+ V ++
Sbjct: 64 YQVCREIRAK-SGTPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRY 122
Query: 122 N 122
+
Sbjct: 123 H 123
>gi|315506484|ref|YP_004085371.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|315413103|gb|ADU11220.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 238
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +DD + + + L + G V +G A EEP L++ D++MP +D
Sbjct: 7 MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALAAAEEEPPDLVVLDLMMPGLD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR P L V+ +T A ++KPF R+LV + +L
Sbjct: 67 GIEVCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRR 126
>gi|229165252|ref|ZP_04293041.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
gi|228618223|gb|EEK75259.1| hypothetical protein bcere0007_2430 [Bacillus cereus AH621]
Length = 237
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L + L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNQNNYNLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDTT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|149197475|ref|ZP_01874526.1| response regulator [Lentisphaera araneosa HTCC2155]
gi|149139493|gb|EDM27895.1| response regulator [Lentisphaera araneosa HTCC2155]
Length = 223
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + AL G++ + A A + + E +L++ DI +P+ +G +
Sbjct: 3 KILIVEDEPSIADNIRMALDLEGFQHRWASTLAQADEYLAENTINLIILDIGLPDGNGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ V+ +T + ++KPF R+L + +L
Sbjct: 63 FCRKLRASQ-NIPVIMLTARSDEVDRIVGLEIGADDYVTKPFSPRELSARIKSVLRR 118
>gi|52144660|ref|YP_082168.1| response regulator [Bacillus cereus E33L]
gi|51978129|gb|AAU19679.1| response regulator [Bacillus cereus E33L]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|209168557|gb|ACI42274.1| OmpR [Vibrio alginolyticus]
Length = 239
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|121726691|ref|ZP_01679916.1| transcriptional regulator OmpR [Vibrio cholerae V52]
gi|147673571|ref|YP_001218202.1| osmolarity response regulator [Vibrio cholerae O395]
gi|262170044|ref|ZP_06037733.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
gi|4433393|gb|AAD20723.1| response regulator homolog OmpR [Vibrio cholerae]
gi|121630852|gb|EAX63234.1| transcriptional regulator OmpR [Vibrio cholerae V52]
gi|146315454|gb|ABQ19993.1| transcriptional regulator OmpR [Vibrio cholerae O395]
gi|227014600|gb|ACP10810.1| transcriptional regulator OmpR [Vibrio cholerae O395]
gi|262021452|gb|EEY40164.1| two-component system response regulator OmpR [Vibrio cholerae RC27]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|317054847|ref|YP_004103314.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315447116|gb|ADU20680.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 234
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD ++ L L K GY V+ ++G A K ++L DI++P +DG +
Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + KPF ++++ + +
Sbjct: 65 VCREIRKK-SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120
>gi|229018790|ref|ZP_04175639.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229025034|ref|ZP_04181462.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228736240|gb|EEL86807.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228742540|gb|EEL92691.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|225574441|ref|ZP_03783051.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
10507]
gi|225038326|gb|EEG48572.1| hypothetical protein RUMHYD_02510 [Blautia hydrogenotrophica DSM
10507]
Length = 232
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V + A + + E L + DI++P +D
Sbjct: 1 MSEKILVVDDEHDIADLLEVYLKNENYTVYKYYSAMEALECIEREELDLAILDIMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF +LV V L
Sbjct: 61 GFSICQKIRERY-TYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQLRR 119
>gi|254413172|ref|ZP_05026943.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196179792|gb|EDX74785.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 467
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 7/129 (5%)
Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M++K +L+ ED+ FL L K+G++V+ +G +A +V L+L D++
Sbjct: 1 MDKKAAQGNLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVM 60
Query: 56 MPEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
MP MDG E+ +R D+ V+F+T + ++KP ++V+
Sbjct: 61 MPGMDGFEVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQPEEVVSR 120
Query: 114 VNRLLTIKN 122
+ LT++N
Sbjct: 121 IQTHLTLRN 129
>gi|91779864|ref|YP_555072.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
gi|91692524|gb|ABE35722.1| GAF sensor hybrid histidine kinase [Burkholderia xenovorans LB400]
Length = 1651
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D+R ++ + L AG+EV +G +A + R+E L+L+D++MP +DG
Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L R D V+ ++ A D L+KPF R+L+ V
Sbjct: 721 LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773
Score = 101 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59
+ +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP +
Sbjct: 1376 TETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPL 1435
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L
Sbjct: 1436 RSTELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQ 1495
Query: 120 IKN 122
+N
Sbjct: 1496 TQN 1498
Score = 79.8 bits (197), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ +R + L ++++ A + E S++LTD+ + G++
Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
LA PDL+V+F+TG+ V +A +L KP+ L DL++ + L
Sbjct: 1596 LALEVCAGRPDLRVIFLTGYDLVLTPEQRKVLPHAILLRKPYDLLDLIDALKTPLR 1651
>gi|296133811|ref|YP_003641058.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296032389|gb|ADG83157.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 235
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L K G++V +G +A + L+L D+++P +DG+E
Sbjct: 3 KILIVDDEHHIIELVRFVLQKEGFDVKVAQDGLTAIKETENYRPDLILLDLMLPGIDGLE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D+ V+ +T + ++KPF R+LV V L +
Sbjct: 63 VCRTLRKKPETADIPVIMVTAKSDEMDKIIGLELGADDYVTKPFSPRELVARVKARLRRR 122
>gi|260577819|ref|ZP_05845753.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
gi|258604046|gb|EEW17289.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
Length = 234
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L ++L GY V+ +G A + EE L + D++MP+ DG++
Sbjct: 5 KILVVDDDQAVRESLRRSLIFNGYTVILATDGEEALKLIAEERPDLAILDVMMPKKDGLD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R DL ++ +T +V L KPF L +L+ L
Sbjct: 65 VCRELRSHGDDLPILLLTARDSVEERVAGLDAGADDYLPKPFALEELLARTRSLFRR 121
>gi|237736770|ref|ZP_04567251.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
gi|229420632|gb|EEO35679.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
Length = 223
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D++ +R L L K GYEV +G E+PF L++ D+++P+ DG
Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + + V+ +T ++KPF+ + L+ V LL N
Sbjct: 67 SILREIKK-YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRKTN 125
>gi|51891869|ref|YP_074560.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855558|dbj|BAD39716.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 231
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ ++IL+A+DD + L AL G+ V+ ++G A D + L++ D++MP+
Sbjct: 1 MSVARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R + ++ +T ++KPF L +LV V+ +L
Sbjct: 61 VDGFAVCGRIRAA-SAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|119776642|ref|YP_929382.1| osmolarity response regulator [Shewanella amazonensis SB2B]
gi|119769142|gb|ABM01713.1| two component transcriptional regulator, winged helix family
[Shewanella amazonensis SB2B]
Length = 241
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V + N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLVEQGFQVRAAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + L ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQTGSPLPIIMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|284047483|ref|YP_003397822.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
gi|283951704|gb|ADB46507.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
Length = 224
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + K L Y V NG A D + + LL+ DI+MPEMDG+
Sbjct: 2 KILVVEDEPTLNKIIAKRLKIEAYSVDCAFNGKEALDYLDAAEYDLLIVDIMMPEMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L ++ + + V+F+T + L KPF +L+ + LL N
Sbjct: 62 LVKKLRDGGSRVPVLFLTALDSTQDKVTGLDSGGDDYLVKPFEFDELLARIRSLLRRSN 120
>gi|253574045|ref|ZP_04851387.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251846522|gb|EES74528.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 233
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+D+ ++ + L + GY + +NG A D ++ + L + DI+MP++DG E
Sbjct: 5 TVLIADDEPEIADLIELHLAREGYRCIKASNGQEALDVIQTQSVDLAILDIMMPKIDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E L ++F++ A ++KPF+ +LV VN L
Sbjct: 65 VTRQIREKH-HLPIIFLSAKATDLDKITGLVRGADDYMTKPFNPMELVARVNAQLRR 120
>gi|170695744|ref|ZP_02886886.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170139349|gb|EDT07535.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 247
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD +R + + L G++V + +G + K+++E +L++ DI+MPE+D
Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|297583440|ref|YP_003699220.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297141897|gb|ADH98654.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 238
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +L+ +D++ MR + L GY V+ +G A ++ ++ D++MP
Sbjct: 1 MTEQPITVLIVDDEEQMREMIRNILTNEGYHVLEAADGFEAIQRIEYHKIHFVILDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++DG E + L V+ +T + + D L+KPF +L+ + +
Sbjct: 61 KLDGYETLDILRKQ-SGLPVLMLTAKSEESDKVDGLRAGADDYLTKPFGRNELLARMEAI 119
Query: 118 LTIKN 122
L +
Sbjct: 120 LRRSD 124
>gi|324327498|gb|ADY22758.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 225
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|313631991|gb|EFR99109.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria seeligeri FSL N1-067]
Length = 236
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G++ Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGSAGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + D+ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|260587734|ref|ZP_05853647.1| regulatory protein VanR [Blautia hansenii DSM 20583]
gi|260541999|gb|EEX22568.1| regulatory protein VanR [Blautia hansenii DSM 20583]
Length = 299
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L + V + A++ + +E L L DI+MP++
Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ E + ++ +T A ++KPF ++V V L
Sbjct: 129 GLELCKKIRERY-NYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRR 187
>gi|159036071|ref|YP_001535324.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157914906|gb|ABV96333.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 227
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED++ L L K G+EV G SA + ++L D+++PEM
Sbjct: 1 MS-RVLVVEDEESFSDALSYMLRKEGFEVSVAATGTSALTEFDRTGADIVLLDLMLPEMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ +T + ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQLRQR-SYVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 QS 120
>gi|148238512|ref|YP_001223899.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147847051|emb|CAK22602.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 269
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L AGY VV +G A + E L++ D+++P++DG
Sbjct: 23 KATLLVVDDEPAVRRVLVMRLQLAGYRVVCAEDGEQALEVFSRESPDLVVLDVMLPKLDG 82
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 83 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 140
>gi|114566483|ref|YP_753637.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114337418|gb|ABI68266.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 239
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D+ + + L K GY V +G A + V++ P L+L DI++P+MDG
Sbjct: 3 NAKILVVDDETHIVELVKFNLEKEGYRVAVAYDGQCALEMVKDAPPDLILLDIMLPQMDG 62
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R + + ++ +T + KPF R++V V L
Sbjct: 63 LEVCRTLKQHSEYKTIPIIMLTAKGEEIDTILGLEMGADDYIKKPFSPREMVARVKARLR 122
>gi|158320763|ref|YP_001513270.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140962|gb|ABW19274.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 229
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + + L +L + GYE+++ +G A +K + L+L D+++P++D
Sbjct: 1 MGYKILIVDDEPLLVKGLKYSLEQDGYEILTAFDGEEALEKAKIANADLILLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ L+ ++ +T L+KPF++ +L + +L
Sbjct: 61 GLQVCQQIR-LNSQTPIIMLTAKGEDMSKILGLEYGADDYLTKPFNILELKARIKAVLRR 119
>gi|301059412|ref|ZP_07200334.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300446493|gb|EFK10336.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 231
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + +L+ +D++D+ + L + GY V G A ++ + L++ D+++P +
Sbjct: 1 MSGKHVLVVDDEEDILELVRFNLSREGYRVDCVGTGEEAIKIIKSKQPDLMVLDLMLPGI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+AR ++ ++ +T A ++KPF R L + +
Sbjct: 61 DGFEVARFLKRDPETSNIPIVMLTAKTEEADVLTGLEMGADDYVTKPFSPRILTARIKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|146280822|ref|YP_001170975.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
gi|145569027|gb|ABP78133.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri A1501]
gi|327479090|gb|AEA82400.1| DNA-binding response regulator PhoB [Pseudomonas stutzeri DSM 4166]
Length = 229
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN K IL+ +D+ +R ++ AL AGY+ + N A+ + + L+L D ++P
Sbjct: 1 MNGKSILIVDDEAPIREMIVVALEMAGYDCLEAENTQQAHALIIDRKPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR EL D ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDELTADTPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|262401995|ref|ZP_06078560.1| two-component system response regulator OmpR [Vibrio sp. RC586]
gi|262351967|gb|EEZ01098.1| two-component system response regulator OmpR [Vibrio sp. RC586]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|224024107|ref|ZP_03642473.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
18228]
gi|224017329|gb|EEF75341.1| hypothetical protein BACCOPRO_00826 [Bacteroides coprophilus DSM
18228]
Length = 228
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED++ + L L + GY+ +GA ++ F L+++D+++P+MD
Sbjct: 1 MN-TILIIEDEERVAGLLKAGLEENGYQTWVAYDGAMGLRLFKQHTFQLVISDVILPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + +++P + ++ +T + + + KPF R+L + LL
Sbjct: 60 GFELCKEIRKINPSVPILMLTALGSTDDKLEGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|188587493|ref|YP_001919038.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179352180|gb|ACB86450.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 234
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED+ + + L K GYE NG +K +++ D+++P D
Sbjct: 1 MSYRVLIVEDEQPIADIINFNLVKEGYETEVAYNGEDGLEKFASFSPHIIVLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T + ++KPF R+L+ + LL
Sbjct: 61 GFSVCKEIRSQ-SSVPILVLTAKDSEVDKVLGLELGADDYVTKPFGNRELLARIKALLRR 119
Query: 121 KN 122
N
Sbjct: 120 VN 121
>gi|253752080|ref|YP_003025221.1| response regulator protein [Streptococcus suis SC84]
gi|251816369|emb|CAZ52000.1| response regulator protein [Streptococcus suis SC84]
Length = 234
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + + GYEVV+ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|229143070|ref|ZP_04271504.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
gi|296501093|ref|YP_003662793.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|228640399|gb|EEK96795.1| hypothetical protein bcere0012_2450 [Bacillus cereus BDRD-ST24]
gi|296322145|gb|ADH05073.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 237
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|224476605|ref|YP_002634211.1| respiratory response regulator receiver SrrA [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222421212|emb|CAL28026.1| staphylococcal respiratory response regulator receiver SrrA
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 240
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D++ +RR L L + +++ +G A D ++ +L D+++PE+D
Sbjct: 1 MT-KILVVDDEERIRRLLKLYLERESFDIEEAQDGKEALDMALNTDYACILLDLMLPELD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+A R E D ++ +T + + KPF R++V V LL
Sbjct: 60 GIEVANRLRE-YKDTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 118
>gi|323527540|ref|YP_004229693.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323384542|gb|ADX56633.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 247
Score = 153 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD +R + + L G++V + +G + K+++E +L++ DI+MPE+D
Sbjct: 1 MNQSILVVDDDPVVRELVSQYLEGRGFKVATLEHGMALQRKLQDERPALVVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|297544467|ref|YP_003676769.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842242|gb|ADH60758.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 231
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ + + L + G+ V++ NG + D ++E +L++ D+++P +
Sbjct: 1 MDKKILVVDDEIKILEVVKSYLEREGFSVITETNGNNVLDTFKKEKPNLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|182416794|ref|ZP_02948188.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237667398|ref|ZP_04527382.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182379374|gb|EDT76871.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237655746|gb|EEP53302.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 224
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R L L K + V +NG + L++ DI+MP MD
Sbjct: 1 MKKSILIVEDELRIRFLLRDYLTKDDFNVFEASNGEEGLFVFSTQKIDLVILDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + E+ + V+ +T + ++KPF + L+ +V LL
Sbjct: 61 GMTMLEKLREV-STVPVILLTAKSEEDDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119
>gi|15642708|ref|NP_232341.1| osmolarity response regulator [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121586637|ref|ZP_01676422.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
gi|153212533|ref|ZP_01948280.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
gi|153802199|ref|ZP_01956785.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
gi|153817423|ref|ZP_01970090.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
gi|153821289|ref|ZP_01973956.1| transcriptional regulator OmpR [Vibrio cholerae B33]
gi|227082828|ref|YP_002811379.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
gi|229507238|ref|ZP_04396743.1| two-component system response regulator OmpR [Vibrio cholerae BX
330286]
gi|229509841|ref|ZP_04399322.1| two-component system response regulator OmpR [Vibrio cholerae B33]
gi|229516962|ref|ZP_04406408.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
gi|229527361|ref|ZP_04416753.1| two-component system response regulator OmpR [Vibrio cholerae
12129(1)]
gi|229606744|ref|YP_002877392.1| osmolarity response regulator [Vibrio cholerae MJ-1236]
gi|254225437|ref|ZP_04919048.1| transcriptional regulator OmpR [Vibrio cholerae V51]
gi|254285903|ref|ZP_04960865.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
gi|254851251|ref|ZP_05240601.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
gi|255744328|ref|ZP_05418280.1| two-component system response regulator OmpR [Vibrio cholera CIRS
101]
gi|262158562|ref|ZP_06029677.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
91/1]
gi|262190727|ref|ZP_06048957.1| two-component system response regulator OmpR [Vibrio cholerae CT
5369-93]
gi|9657311|gb|AAF95854.1| transcriptional regulator OmpR [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121549196|gb|EAX59229.1| transcriptional regulator OmpR [Vibrio cholerae 2740-80]
gi|124116404|gb|EAY35224.1| transcriptional regulator OmpR [Vibrio cholerae 1587]
gi|124122273|gb|EAY41016.1| transcriptional regulator OmpR [Vibrio cholerae MZO-3]
gi|125622071|gb|EAZ50394.1| transcriptional regulator OmpR [Vibrio cholerae V51]
gi|126512009|gb|EAZ74603.1| transcriptional regulator OmpR [Vibrio cholerae NCTC 8457]
gi|126521221|gb|EAZ78444.1| transcriptional regulator OmpR [Vibrio cholerae B33]
gi|150424085|gb|EDN16024.1| transcriptional regulator OmpR [Vibrio cholerae AM-19226]
gi|227010716|gb|ACP06928.1| transcriptional regulator OmpR [Vibrio cholerae M66-2]
gi|229334993|gb|EEO00478.1| two-component system response regulator OmpR [Vibrio cholerae
12129(1)]
gi|229346025|gb|EEO10997.1| two-component system response regulator OmpR [Vibrio cholerae RC9]
gi|229353315|gb|EEO18254.1| two-component system response regulator OmpR [Vibrio cholerae B33]
gi|229354743|gb|EEO19664.1| two-component system response regulator OmpR [Vibrio cholerae BX
330286]
gi|229369399|gb|ACQ59822.1| two-component system response regulator OmpR [Vibrio cholerae
MJ-1236]
gi|254846956|gb|EET25370.1| transcriptional regulator OmpR [Vibrio cholerae MO10]
gi|255737853|gb|EET93246.1| two-component system response regulator OmpR [Vibrio cholera CIRS
101]
gi|262029723|gb|EEY48372.1| two-component system response regulator OmpR [Vibrio cholerae INDRE
91/1]
gi|262033404|gb|EEY51912.1| two-component system response regulator OmpR [Vibrio cholerae CT
5369-93]
gi|327485184|gb|AEA79591.1| Two-component system response regulator OmpR [Vibrio cholerae
LMA3894-4]
Length = 240
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|322387744|ref|ZP_08061353.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
gi|321141611|gb|EFX37107.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
Length = 234
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREAIELFEAEKPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPIIMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|260437716|ref|ZP_05791532.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
gi|292809739|gb|EFF68944.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
Length = 235
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E + N+G +A L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFETLIVNDGENALTAFFRFKPDLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREIRREN-NTPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|262197840|ref|YP_003269049.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
gi|262081187|gb|ACY17156.1| two component transcriptional regulator, winged helix family
[Haliangium ochraceum DSM 14365]
Length = 235
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ D+ R L AL G++V + G D E +L D+++P+ +G
Sbjct: 11 RKILIVEDEPDIVRGLRDALQFEGFQVEARGTGMEGLDAAAEWGPDCVLLDLMLPDENGY 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ DP + ++ +T + ++KPF + +L+ +N + +
Sbjct: 71 RVCETLRSRDPVVPIIILTAKSQDVDKVRGLEAGADDYVTKPFSVAELIARINAIFRRQ 129
>gi|251779288|ref|ZP_04822208.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083603|gb|EES49493.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 236
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY V NG A + +RE+ L++ D++MP+++G
Sbjct: 4 NKTILIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I+ + E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 64 IDTCLKIREER-EMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121
>gi|298500471|ref|ZP_07010275.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
gi|297540640|gb|EFH76697.1| transcriptional regulator OmpR [Vibrio cholerae MAK 757]
Length = 241
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|150391003|ref|YP_001321052.1| two component, sigma54 specific, Fis family transcriptional
regulator [Alkaliphilus metalliredigens QYMF]
gi|149950865|gb|ABR49393.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Alkaliphilus metalliredigens QYMF]
Length = 449
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+ +MR + KAL Y+V NG +K +E L+L D+ MP MD
Sbjct: 1 MN-KILIVDDEKNMRWAMKKALKTEDYQVFEAANGQEGVEKFQELQPDLVLLDLKMPVMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E ++ +D + V+ IT ++ +SKPF + +L +++ L +
Sbjct: 60 GLEALQKMKGIDEHIPVIMITAHGTTESAVEAMKLGAIDYISKPFDIEELKIVIHKALQV 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|259909297|ref|YP_002649653.1| Response regulator in two-component regulatory system with PhoR
[Erwinia pyrifoliae Ep1/96]
gi|224964919|emb|CAX56442.1| Response regulator in two-component regulatory system with PhoR
[Erwinia pyrifoliae Ep1/96]
gi|283479352|emb|CAY75268.1| Phosphate regulon transcriptional regulatory protein phoB [Erwinia
pyrifoliae DSM 12163]
Length = 229
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + A + + E L+L D ++P
Sbjct: 1 MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEAGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|206967797|ref|ZP_03228753.1| regulatory protein VanR [Bacillus cereus AH1134]
gi|206736717|gb|EDZ53864.1| regulatory protein VanR [Bacillus cereus AH1134]
Length = 232
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD + + L K GY+VV +G +A + ++ + L++ DI+MP+MDG E
Sbjct: 5 TILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ ++F++ + ++KPF +LV VN L
Sbjct: 65 VTRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120
>gi|152969448|ref|YP_001334557.1| putative positive response regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238893919|ref|YP_002918653.1| putative positive response regulator [Klebsiella pneumoniae
NTUH-K2044]
gi|262041045|ref|ZP_06014264.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329999872|ref|ZP_08303542.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
gi|150954297|gb|ABR76327.1| putative positive response regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238546235|dbj|BAH62586.1| putative positive response regulator [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259041603|gb|EEW42655.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538191|gb|EGF64343.1| transcriptional regulatory protein WalR [Klebsiella sp. MS 92-3]
Length = 238
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD+D+ L L GY++V +G A ++ + + ++ D+++P +D
Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGGQALARLETQVWDAVILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L
Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|332982072|ref|YP_004463513.1| Fis family two component sigma-54 specific transcriptional
regulator [Mahella australiensis 50-1 BON]
gi|332699750|gb|AEE96691.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Mahella australiensis 50-1 BON]
Length = 449
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 64/118 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D++ MR L KAL + YE + +G + + L+L D+ +P MD
Sbjct: 1 MPHRILIIDDEERMRWVLCKALEQESYEAEAAGDGIEGLKMLDKHSIDLVLLDMRLPIMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ +R EL P L V+ IT + ++ + + ++KPF + +LV ++ + L
Sbjct: 61 GMEVLKRIKELYPSLPVIIITAYGSIEMAVAAVKAGATDYITKPFDIDELVIQIKKAL 118
>gi|306828529|ref|ZP_07461724.1| response regulator [Streptococcus mitis ATCC 6249]
gi|304429328|gb|EFM32413.1| response regulator [Streptococcus mitis ATCC 6249]
Length = 232
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|295702506|ref|YP_003595581.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294800165|gb|ADF37231.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 230
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ ED+ + R + L GYE G + +E + LLL D+++PE+
Sbjct: 1 MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR D V+ +T A+ ++KPF + +L + L
Sbjct: 61 SGLEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLR 120
>gi|294497140|ref|YP_003560840.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294347077|gb|ADE67406.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 230
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ ED+ + R + L GYE G + +E + LLL D+++PE+
Sbjct: 1 MSKGRILIVEDERKIARLIQLELEHEGYETGMAYTGTEGLAEFQEHDWDLLLLDVMLPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR D V+ +T A+ ++KPF + +L + L
Sbjct: 61 SGLEVLRRIRANDDQTPVILLTARDALPDKVSGLDLGANDYITKPFQIEELFARIRVWLR 120
>gi|238760009|ref|ZP_04621161.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
aldovae ATCC 35236]
gi|238701762|gb|EEP94327.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
aldovae ATCC 35236]
Length = 260
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 32 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVMRLSEPFPDLVLLDWMLPGGS 91
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 92 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 151
Query: 119 TI 120
Sbjct: 152 RR 153
>gi|327193856|gb|EGE60733.1| two component transcriptional regulator, winged helix family
protein [Rhizobium etli CNPAF512]
Length = 234
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + A+ +AG + +G+ A R L++ DI MP+MD
Sbjct: 1 MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + L ++F++ ++KPF R+L+ V +L
Sbjct: 61 GLEVCRQIRK-TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119
>gi|323492021|ref|ZP_08097186.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
brasiliensis LMG 20546]
gi|323313750|gb|EGA66849.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
brasiliensis LMG 20546]
Length = 1128
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ R L L GY V + +G A + V +E LLL DI+MP M G ++
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALEAVEKEKPELLLLDIMMPGMSGYQVC 784
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L V+ +T LSKPF+ ++L + LT
Sbjct: 785 ETLRKSYDHAALPVIMLTALNQTDDRIRGFNAGANDYLSKPFNKQELAARIIAHLT 840
>gi|196047257|ref|ZP_03114472.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225863933|ref|YP_002749311.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|196021882|gb|EDX60574.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225788837|gb|ACO29054.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 229
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVIEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|51595267|ref|YP_069458.1| two-component regulatory system response regulator [Yersinia
pseudotuberculosis IP 32953]
gi|108808689|ref|YP_652605.1| phosphate regulon transcriptional regulator [Yersinia pestis
Antiqua]
gi|108811049|ref|YP_646816.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Nepal516]
gi|149364950|ref|ZP_01886985.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis CA88-4125]
gi|153946834|ref|YP_001402096.1| PhoB family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|165935944|ref|ZP_02224514.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. IP275]
gi|167468099|ref|ZP_02332803.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis FV-1]
gi|170025493|ref|YP_001721998.1| two component transcriptional regulator [Yersinia
pseudotuberculosis YPIII]
gi|186894284|ref|YP_001871396.1| two component transcriptional regulator [Yersinia
pseudotuberculosis PB1/+]
gi|218930234|ref|YP_002348109.1| phosphate regulon transcriptional regulator [Yersinia pestis CO92]
gi|229838810|ref|ZP_04458969.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896037|ref|ZP_04511207.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis Pestoides A]
gi|229899378|ref|ZP_04514521.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis biovar Orientalis
str. India 195]
gi|229901275|ref|ZP_04516397.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis Nepal516]
gi|51588549|emb|CAH20157.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulates Pi uptake (OmpR family) [Yersinia
pseudotuberculosis IP 32953]
gi|108774697|gb|ABG17216.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Nepal516]
gi|108780602|gb|ABG14660.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Antiqua]
gi|115348845|emb|CAL21800.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis CO92]
gi|149291363|gb|EDM41437.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis CA88-4125]
gi|152958329|gb|ABS45790.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pseudotuberculosis IP 31758]
gi|165916089|gb|EDR34696.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. IP275]
gi|169752027|gb|ACA69545.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186697310|gb|ACC87939.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229681204|gb|EEO77298.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis Nepal516]
gi|229687780|gb|EEO79853.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695176|gb|EEO85223.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700960|gb|EEO88989.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Yersinia pestis Pestoides A]
gi|320016389|gb|ADV99960.1| osmolarity response regulator [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 229
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|50120049|ref|YP_049216.1| phosphate regulon response regulator [Pectobacterium atrosepticum
SCRI1043]
gi|227113361|ref|ZP_03827017.1| phosphate regulon response regulator [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
gi|227327489|ref|ZP_03831513.1| phosphate regulon response regulator [Pectobacterium carotovorum
subsp. carotovorum WPP14]
gi|253687403|ref|YP_003016593.1| two component transcriptional regulator PhoB, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261822544|ref|YP_003260650.1| two component transcriptional regulator PhoB, winged helix family
[Pectobacterium wasabiae WPP163]
gi|49610575|emb|CAG74020.1| phosphate regulon response regulator [Pectobacterium atrosepticum
SCRI1043]
gi|251753981|gb|ACT12057.1| two component transcriptional regulator PhoB, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261606557|gb|ACX89043.1| two component transcriptional regulator PhoB, winged helix family
[Pectobacterium wasabiae WPP163]
Length = 229
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA ++ E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTQLSEPFPELVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|260771832|ref|ZP_05880750.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
metschnikovii CIP 69.14]
gi|260613124|gb|EEX38325.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
metschnikovii CIP 69.14]
Length = 1139
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + + +E LLL D++MP M G ++
Sbjct: 735 LIADDEPVNLRVLDSFLRLEGYRVRTALDGHEVIEAIAKEKPELLLLDVMMPGMSGYQVC 794
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E L ++ +T A LSKPF+ ++L + L+
Sbjct: 795 EQLREQYDHAQLPIIMLTALTQSDDRIRGFAAGANDYLSKPFNKQELAARIKAHLS 850
>gi|261414846|ref|YP_003248529.1| two component transcriptional regulator, winged helix family
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|261371302|gb|ACX74047.1| two component transcriptional regulator, winged helix family
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|302327318|gb|ADL26519.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 238
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ ED++ +R L YEV + +G A K L+L D+++P+ G
Sbjct: 4 HRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + P+ ++ +T ++KPF + +L+ V L
Sbjct: 64 EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRR 121
>gi|218441910|ref|YP_002380239.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218174638|gb|ACK73371.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 226
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+ + +++ L Y V ++G A++ V + L+L D+++P+MDGI
Sbjct: 2 KILLVEDDERISDAIVEDLSDQHYLVEVAHDGQEAWELVDVFSYDLILLDVMLPKMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ ++ IT V L KPF L++L V LL
Sbjct: 62 LCRKLRSGGCQTPILMITARDTVEDRVSGLDVGADDYLVKPFALQELSARVRALLRR 118
>gi|95930319|ref|ZP_01313056.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
DSM 684]
gi|95133571|gb|EAT15233.1| multi-sensor hybrid histidine kinase [Desulfuromonas acetoxidans
DSM 684]
Length = 1152
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L+ L A Y V N+G A D V EE L+L DI+MP M G E+
Sbjct: 719 ILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEV 778
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R L V+ +T + V+ ++KPF L+ V L +
Sbjct: 779 CQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSRDILLARVRTQLQL 836
>gi|331090746|ref|ZP_08339593.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330399854|gb|EGG79513.1| hypothetical protein HMPREF9477_00236 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 229
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A +K + + + L+L DI++P+
Sbjct: 1 MGKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEKAKAQEYDLILLDIMLPKYT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ V+ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQMIRE-FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|307718247|ref|YP_003873779.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
gi|306531972|gb|ADN01506.1| transcriptional regulatory protein [Spirochaeta thermophila DSM
6192]
Length = 226
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ D+ + L + GY+VVS G A +K R ++ D+++P M G+E
Sbjct: 2 TILVVDDEPDIVELVRFHLEREGYDVVSTGEGRDALEKARNLLPDAIILDLMLPGMSGLE 61
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D + ++ +T + ++KPF R L+ + +L
Sbjct: 62 VCRLLRQQDRTSHIPILMLTAKSEETDVVVGLELGADDYITKPFSPRILLARLKAVLKR 120
>gi|228990093|ref|ZP_04150065.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
gi|228769621|gb|EEM18212.1| Two component transcriptional regulator, winged helix [Bacillus
pseudomycoides DSM 12442]
Length = 232
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+A+D+ ++ + L K GY V+ +G A + +P L++ DI+MP+M
Sbjct: 1 MNRISILIADDEAEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAQY-HMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|229092565|ref|ZP_04223721.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228690852|gb|EEL44627.1| Two-component response regulator [Bacillus cereus Rock3-42]
Length = 225
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|227872835|ref|ZP_03991146.1| two component response regulator [Oribacterium sinus F0268]
gi|227841305|gb|EEJ51624.1| two component response regulator [Oribacterium sinus F0268]
Length = 228
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 63/118 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + + + L +A YEV + +G A + + + L++ D++MP+++G +
Sbjct: 2 RILLVEDEKILSKSIKMILERAEYEVDTAYDGEEALEYAKTAIYDLMILDVMMPKLNGYQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+AR+ + L ++ +T + + + L+KPF R+L+ ++ LL +
Sbjct: 62 VARQLRKEKNGLPILMLTAKSQLEDRIEGLEGGADYYLTKPFDKRELLACISALLRRQ 119
>gi|218886726|ref|YP_002436047.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218757680|gb|ACL08579.1| two component transcriptional regulator, winged helix family
[Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 275
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN + IL+ +DD ++R L L K G+ S +G+ + + + L++ D+++P
Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R+ +L V+ +T ++KPF+ R+LV + +L
Sbjct: 61 DDGLTLCRKLRAR-SELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|315652944|ref|ZP_07905910.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
gi|315484802|gb|EFU75218.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
Length = 235
Score = 153 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K YE +G SA + E +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDENIAELISLYLMKECYETKIVGDGESALNDFDEFKPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R V+ ++ V + KPF ++L+ V ++
Sbjct: 64 YQVCREIRAK-SGTPVIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELIARVKAVIRRY 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|227547950|ref|ZP_03977999.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
gi|227079961|gb|EEI17924.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
Length = 235
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ K+L+ +D+ ++ L +L G+EV S N+G+ A RE + D++MP
Sbjct: 4 MNEGVKVLVVDDEPNIVELLTVSLRFQGFEVESVNSGSEALKVAREFRPDAYILDVMMPG 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG EL + D V+F+T AV ++KPF L +++ + +L
Sbjct: 64 MDGFELLSKLRADGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVIL 123
Query: 119 TIKN 122
N
Sbjct: 124 RRGN 127
>gi|145600097|ref|YP_001164173.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Pestoides F]
gi|145211793|gb|ABP41200.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Pestoides F]
Length = 229
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|124112128|ref|YP_001019064.1| regulatory component of sensory transduction system [Chlorokybus
atmophyticus]
gi|124012235|gb|ABM87971.1| regulatory component of sensory transduction system [Chlorokybus
atmophyticus]
Length = 241
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI++ +D+ +R+ + L GY V++ N+G A +E L++ D++MP++DG
Sbjct: 7 NEKIMVVDDEAIVRQIIQTRLSMIGYNVITANDGEEAIKMFFKEQPQLVVLDVMMPKLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ ++ +T VA + KPF ++L + +
Sbjct: 67 YSVCQQLRRE-SDVPIIMLTALEDVADRITGLELGADDYIMKPFSPKELEARIRSVFRRS 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|330719359|ref|ZP_08313959.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
Length = 232
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + L L + GY V +GA+A V +E + +L D+++PE+D
Sbjct: 1 MS-RILVVDDEQAITTLLQFNLEQNGYHVTIAADGATALQLVEQEQYDAVLLDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R+ E + V+ +T ++KPF R+++ + +L
Sbjct: 60 GMSVLRQMRENSIRIPVILVTAKGDEFDRIFGLEIGADDYITKPFSPREVIARLKAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 YH 121
>gi|304398989|ref|ZP_07380858.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|304353449|gb|EFM17827.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
Length = 231
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EVV ++G A + + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFEVVVASDGEQALNLI-DNSIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|296136175|ref|YP_003643417.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
gi|295796297|gb|ADG31087.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
Length = 244
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L AG+ + + A +R+ +LL D ++P M G+ L
Sbjct: 7 ILIVEDEPAIAELLAMNLQHAGHCPIRAGSAEEALRVIRDVLPDVLLIDWMLPGMSGVAL 66
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
AR + ++ +T + ++KPF ++L+ + +L +
Sbjct: 67 ARALRTDARTKAIPIIMLTARSEEGDKVQGLDAGADDYITKPFSPKELLARIRAVLRRR 125
>gi|228909410|ref|ZP_04073235.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228850187|gb|EEM95016.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 225
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|220932997|ref|YP_002509905.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
gi|219994307|gb|ACL70910.1| two component transcriptional regulator, winged helix family
[Halothermothrix orenii H 168]
Length = 226
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++++R + L AGY V +G +D++ + L++ D+++P +DG+
Sbjct: 2 EKILVIDDEENIRELIKFNLETAGYRVELAADGEEGWDRL-NDSIDLIILDLMLPRIDGL 60
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D+ ++ +T ++KPF R+LV + +L
Sbjct: 61 SFCRQVRSNNRFKDIPIIMLTAKGEEVDKIIGLEMGADDYITKPFSPRELVARIKAVLRR 120
>gi|150389310|ref|YP_001319359.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949172|gb|ABR47700.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 227
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ ED+ + RFL L GY+V ++G + E F L++ DI++P M
Sbjct: 1 MSGKKILIIEDEVKIARFLELELMHEGYQVAQAHDGRKGLEMAERETFDLIILDIMLPYM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GIE+ R+ + ++ ++ +T V ++KPF + +L+ + L
Sbjct: 61 NGIEVLRKIR-HNSEVPIIMLTAKDEVMDKVIGLDMGANDYITKPFAIEELLARIRSALK 119
Query: 120 IKN 122
KN
Sbjct: 120 TKN 122
>gi|90412688|ref|ZP_01220689.1| putative transcriptional regulator OmpR [Photobacterium profundum
3TCK]
gi|90326263|gb|EAS42682.1| putative transcriptional regulator OmpR [Photobacterium profundum
3TCK]
Length = 239
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLSRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANSVLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|254976863|ref|ZP_05273335.1| DNA-binding response regulator [Clostridium difficile QCD-66c26]
gi|255094250|ref|ZP_05323728.1| DNA-binding response regulator [Clostridium difficile CIP 107932]
gi|255316003|ref|ZP_05357586.1| DNA-binding response regulator [Clostridium difficile QCD-76w55]
gi|255518660|ref|ZP_05386336.1| DNA-binding response regulator [Clostridium difficile QCD-97b34]
gi|255651782|ref|ZP_05398684.1| DNA-binding response regulator [Clostridium difficile QCD-37x79]
gi|260684808|ref|YP_003216093.1| hypothetical protein CD196_3079 [Clostridium difficile CD196]
gi|260688466|ref|YP_003219600.1| hypothetical protein CDR20291_3125 [Clostridium difficile R20291]
gi|306521572|ref|ZP_07407919.1| hypothetical protein CdifQ_18911 [Clostridium difficile QCD-32g58]
gi|260210971|emb|CBA66245.1| putative uncharacterized protein [Clostridium difficile CD196]
gi|260214483|emb|CBE06963.1| putative uncharacterized protein [Clostridium difficile R20291]
Length = 232
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ D+ + L Y V +G A + + F L + D+++P ++
Sbjct: 1 MSGKILVVDDERDIADLIEVYLTNENYIVYKFYSGLDALNCINLNEFDLAILDVMLPGVN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E ++ +T ++KPF +LV V +
Sbjct: 61 GFSLCQKIREKY-TYPIIMLTAKDEETDKITGLTLGADDYVTKPFRPLELVARVKAQIRR 119
>gi|229188858|ref|ZP_04315891.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228594563|gb|EEK52349.1| Two-component response regulator [Bacillus cereus ATCC 10876]
Length = 225
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCATSGEEAILHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T + KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNIPIIMVTARDQTVDVVQGLKLGADDYVMKPFHEEELFARIEAVLRRTN 120
>gi|254411201|ref|ZP_05024978.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196181702|gb|EDX76689.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 249
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ILL +DD + + L AGYEV +G + L++ D+++P +DG
Sbjct: 2 HRILLIDDDPAISELVSINLEMAGYEVHQAPDGIKGQALALQLQPDLIMLDLMLPRVDGF 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF L +++ V LL
Sbjct: 62 TVCQRLRRDERTTDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 121
>gi|51893145|ref|YP_075836.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51856834|dbj|BAD40992.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 229
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L +L + G++V + ++G A K R F L++ D+++P +DG+
Sbjct: 3 HILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDGLT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ +T A ++KPF+ R+L+ + +L
Sbjct: 63 ICREVRAAGM-TPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRR 118
>gi|30021702|ref|NP_833333.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|75760689|ref|ZP_00740714.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206969120|ref|ZP_03230075.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218235232|ref|YP_002368413.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218898694|ref|YP_002447105.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228902100|ref|ZP_04066264.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228922307|ref|ZP_04085614.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228940685|ref|ZP_04103248.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228953868|ref|ZP_04115907.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228959784|ref|ZP_04121459.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228966495|ref|ZP_04127548.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228973603|ref|ZP_04134185.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228980161|ref|ZP_04140475.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|229047283|ref|ZP_04192882.1| Two-component response regulator [Bacillus cereus AH676]
gi|229071099|ref|ZP_04204325.1| Two-component response regulator [Bacillus cereus F65185]
gi|229075494|ref|ZP_04208483.1| Two-component response regulator [Bacillus cereus Rock4-18]
gi|229080805|ref|ZP_04213323.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|229098043|ref|ZP_04228993.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229104130|ref|ZP_04234804.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|229111024|ref|ZP_04240583.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229117061|ref|ZP_04246443.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|229128872|ref|ZP_04257848.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|229146167|ref|ZP_04274542.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|229151795|ref|ZP_04279994.1| Two-component response regulator [Bacillus cereus m1550]
gi|229179886|ref|ZP_04307232.1| Two-component response regulator [Bacillus cereus 172560W]
gi|229191685|ref|ZP_04318664.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|296504106|ref|YP_003665806.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|29897257|gb|AAP10534.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|74491807|gb|EAO54998.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|206736161|gb|EDZ53319.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218163189|gb|ACK63181.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218541903|gb|ACK94297.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228591847|gb|EEK49687.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228603567|gb|EEK61042.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228631608|gb|EEK88238.1| Two-component response regulator [Bacillus cereus m1550]
gi|228637226|gb|EEK93681.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228654577|gb|EEL10439.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228666465|gb|EEL21925.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228672387|gb|EEL27672.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228679337|gb|EEL33540.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228685480|gb|EEL39408.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|228702539|gb|EEL55007.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228707743|gb|EEL59927.1| Two-component response regulator [Bacillus cereus Rock4-18]
gi|228712039|gb|EEL63988.1| Two-component response regulator [Bacillus cereus F65185]
gi|228724025|gb|EEL75371.1| Two-component response regulator [Bacillus cereus AH676]
gi|228779519|gb|EEM27772.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228786064|gb|EEM34061.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228793217|gb|EEM40767.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228799914|gb|EEM46856.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805836|gb|EEM52416.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228818929|gb|EEM64991.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228837362|gb|EEM82696.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228857526|gb|EEN02022.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|296325158|gb|ADH08086.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 225
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|325262633|ref|ZP_08129370.1| DNA-binding response regulator VicR [Clostridium sp. D5]
gi|324032465|gb|EGB93743.1| DNA-binding response regulator VicR [Clostridium sp. D5]
Length = 249
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ + + + +L + G EV +G A + R + L+L D+++P++
Sbjct: 21 MSEKKILVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALEYARNCEYDLVLLDVMLPKL 80
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ ++ E D+ V+ +T + ++KPF++ ++ + ++
Sbjct: 81 DGFQVCQQIRE-FSDMPVVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMR 139
Query: 120 I 120
Sbjct: 140 R 140
>gi|317494184|ref|ZP_07952600.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917957|gb|EFV39300.1| sigma-54 interaction domain-containing protein [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 464
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 2/124 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +IL+ +D+ ++ R L + G +V +NG A +E ++L DI MP
Sbjct: 1 MSQPCRILIVDDEKNVLRMLNTVFSQEGNQVFCADNGQDALAIFEQERPDVVLMDIRMPT 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G+E +R E D ++ +T +AAV ++ + KPF L +L +NR L
Sbjct: 61 MNGLEALQRMREKWLDTPIILMTAYAAVETAVEALRLGAFDYVIKPFELDELKLLINRAL 120
Query: 119 TIKN 122
++N
Sbjct: 121 QLRN 124
>gi|288555257|ref|YP_003427192.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
gi|288546417|gb|ADC50300.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
Length = 233
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ ED+ ++ R + L GYE +G SA +++ + +SL+L D+++P + G
Sbjct: 3 NARILIVEDEANIARVIELELEHEGYETEIAADGLSALEQIEQGGWSLILLDVMLPRLSG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ RR + V+ +T + ++KPF + +L+ + L
Sbjct: 63 MEVLRRIRKEGNTTPVIMLTARDTIVDKVMGLDQGANDYVTKPFEIEELLARIRACLR 120
>gi|261250559|ref|ZP_05943134.1| two-component system response regulator OmpR [Vibrio orientalis CIP
102891]
gi|260939128|gb|EEX95115.1| two-component system response regulator OmpR [Vibrio orientalis CIP
102891]
Length = 239
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANSTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|255280864|ref|ZP_05345419.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
formatexigens DSM 14469]
gi|255268801|gb|EET62006.1| subtilin biosynthesis regulatory protein SpaR [Bryantella
formatexigens DSM 14469]
Length = 240
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ D+ L + GY V++ +GA A K E+ ++L D+ MPE+DG+E
Sbjct: 20 RILIVDDEPDIVEMLRCFFERRGYFVLTATDGAEALKKA-EQQPDMILLDVNMPELDGME 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + P ++F+T + A + KPF L +L V L +
Sbjct: 79 VCRRIRDFVP-CPILFLTARIEESDRVQGFAAGGDDYILKPFSLAELEARVAAHLRRE 135
>gi|159904286|ref|YP_001551630.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
gi|159889462|gb|ABX09676.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
Length = 269
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ + + L+ L AGY V+S +G A + E L++ D+++P++DG
Sbjct: 24 KATILVVDDEPAVLKVLVTRLELAGYHVISAKDGEEALELFHRESPDLVVLDVMLPKLDG 83
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ LSKPF ++L + +L
Sbjct: 84 FAVCRRIRGESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 141
>gi|91224990|ref|ZP_01260249.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
gi|269965884|ref|ZP_06179977.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
gi|91190236|gb|EAS76506.1| osmolarity response regulator [Vibrio alginolyticus 12G01]
gi|269829437|gb|EEZ83678.1| Transcriptional regulatory protein ompR [Vibrio alginolyticus 40B]
Length = 239
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|22536883|ref|NP_687734.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|25010796|ref|NP_735191.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
gi|76786877|ref|YP_329467.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|76798183|ref|ZP_00780434.1| VicR protein [Streptococcus agalactiae 18RS21]
gi|77406409|ref|ZP_00783468.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|77408360|ref|ZP_00785101.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77410786|ref|ZP_00787144.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|77413081|ref|ZP_00789282.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|22533733|gb|AAM99606.1|AE014224_9 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|23095150|emb|CAD46385.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561934|gb|ABA44518.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|76586446|gb|EAO62953.1| VicR protein [Streptococcus agalactiae 18RS21]
gi|77160874|gb|EAO71984.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|77163165|gb|EAO74118.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|77173041|gb|EAO76169.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77174973|gb|EAO77783.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|319744748|gb|EFV97090.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
13813]
Length = 236
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L K GYE + +G A + E L++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNLTKEGYETATAFDGREALVQYAEFQPDLIILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L+ V L
Sbjct: 62 EVAKEVRK-TSHIPIIMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKAHLRR 118
>gi|83859329|ref|ZP_00952850.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
HTCC2633]
gi|83852776|gb|EAP90629.1| phosphate regulon response regulator PhoB [Oceanicaulis alexandrii
HTCC2633]
Length = 228
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K G+ V +G A V E +++ D ++P++
Sbjct: 1 MQPHVLVVEDEDALSELLSYNLKKEGFRVSLAADGEEAMMLVEERQPDVVVLDWMLPKIS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR +L ++ +T A + KPF +++L V +L
Sbjct: 61 GIEVCRRLRSRHETRNLPIIMLTARGEEADRIRGLDTGADDYIVKPFLMKELFARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|219667720|ref|YP_002458155.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537980|gb|ACL19719.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 233
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+A+D+ ++ + L YE + +G A + R L++ DI+MP +
Sbjct: 1 MTKEKILIADDEVELAELVKDFLSDEQYEALVARDGHEALELFRMNQPQLVILDIMMPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR ++ ++ ++ A + KPF ++V V L
Sbjct: 61 DGMEVCRRIRAE-SNVPIIMLSAKKAEVDKILGLGLGADDYIVKPFSPGEVVARVKAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|157373309|ref|YP_001471909.1| osmolarity response regulator [Shewanella sediminis HAW-EB3]
gi|157315683|gb|ABV34781.1| two component transcriptional regulator, winged helix family
[Shewanella sediminis HAW-EB3]
Length = 241
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANSEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + ++ +T L KPF+ R+L+ + ++ ++
Sbjct: 67 ICRRLRQTGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQS 125
>gi|148273658|ref|YP_001223219.1| putative two component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|170783063|ref|YP_001711397.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
gi|147831588|emb|CAN02556.1| putative two component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|169157633|emb|CAQ02831.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
Length = 230
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R L +L AG+ V + NGA A V EE L++ D+++P+M+G
Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDLIILDVMLPDMNGFG 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++F+T ++KPF L ++V + +L
Sbjct: 66 VTKRLRAAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAILRR 122
>gi|222056727|ref|YP_002539089.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
gi|221566016|gb|ACM21988.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
Length = 226
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ ED+ + + AL G+E + +G + + L++ D+ +P+M
Sbjct: 1 MKPRIMIVEDEPGIVDAIQYALETEGFETLCFPSGTQVVSSLADHAVDLIILDVGLPDMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ +L + ++F+T A ++KPF R++ V +L
Sbjct: 61 GFELCKQIRQLRS-VPIIFLTARADEIDRIVGLEIGADDYITKPFSPREVSARVKAVLRR 119
>gi|145301037|ref|YP_001143878.1| two-component system response regulator CpxR [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142853809|gb|ABO92130.1| two-component system response regulator CpxR [Aeromonas salmonicida
subsp. salmonicida A449]
gi|148292091|emb|CAN84664.1| transcriptional regulatory protein CpxR [Aeromonas salmonicida
subsp. salmonicida]
Length = 231
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ + L + L G++V +G ++ E+ F+L+L D++MP ++G
Sbjct: 2 HKILLVDDDLELTQLLTEILTLEGFQVTVAEDGEEGLLRLAEQDFNLVLLDVMMPRLNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+ +T + L+KPF R+L+ + +L
Sbjct: 62 AMLAKLRETH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARIRAILRR 118
>gi|30263549|ref|NP_845926.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|42782670|ref|NP_979917.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|47528946|ref|YP_020295.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|47567882|ref|ZP_00238589.1| two-component response regulator [Bacillus cereus G9241]
gi|49186400|ref|YP_029652.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49477754|ref|YP_037680.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52141934|ref|YP_084893.1| transcriptional regulatory protein [Bacillus cereus E33L]
gi|118478844|ref|YP_895995.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
Hakam]
gi|165870959|ref|ZP_02215610.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167636464|ref|ZP_02394762.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640572|ref|ZP_02398834.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170688455|ref|ZP_02879663.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170708146|ref|ZP_02898593.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177652476|ref|ZP_02934943.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190564567|ref|ZP_03017488.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196034040|ref|ZP_03101450.1| DNA-binding response regulator [Bacillus cereus W]
gi|196038467|ref|ZP_03105776.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196044699|ref|ZP_03111934.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|206975347|ref|ZP_03236260.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217961002|ref|YP_002339570.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|218904728|ref|YP_002452562.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|222097054|ref|YP_002531111.1| transcriptional regulatory protein [Bacillus cereus Q1]
gi|225865582|ref|YP_002750960.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227813568|ref|YP_002813577.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228916230|ref|ZP_04079800.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228928652|ref|ZP_04091688.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228934872|ref|ZP_04097703.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228947215|ref|ZP_04109509.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228986689|ref|ZP_04146819.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229123117|ref|ZP_04252324.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|229140213|ref|ZP_04268771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|229157173|ref|ZP_04285253.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|229185835|ref|ZP_04313008.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|229197708|ref|ZP_04324428.1| Two-component response regulator [Bacillus cereus m1293]
gi|229604587|ref|YP_002867793.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254686167|ref|ZP_05150026.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254726066|ref|ZP_05187848.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254738640|ref|ZP_05196343.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254744802|ref|ZP_05202480.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254752958|ref|ZP_05204994.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254759230|ref|ZP_05211256.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|301055087|ref|YP_003793298.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|30258184|gb|AAP27412.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|42738596|gb|AAS42525.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|47504094|gb|AAT32770.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|47555360|gb|EAL13704.1| two-component response regulator [Bacillus cereus G9241]
gi|49180327|gb|AAT55703.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49329310|gb|AAT59956.1| transcriptional regulatory protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51975403|gb|AAU16953.1| transcriptional regulatory protein [Bacillus cereus E33L]
gi|118418069|gb|ABK86488.1| transcriptional regulatory protein [Bacillus thuringiensis str. Al
Hakam]
gi|164713170|gb|EDR18696.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511440|gb|EDR86824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167528123|gb|EDR90915.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170126954|gb|EDS95834.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170667625|gb|EDT18380.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172082150|gb|EDT67217.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190563884|gb|EDV17848.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195993114|gb|EDX57072.1| DNA-binding response regulator [Bacillus cereus W]
gi|196024734|gb|EDX63406.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196030875|gb|EDX69473.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|206746249|gb|EDZ57643.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217065228|gb|ACJ79478.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|218538759|gb|ACK91157.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|221241112|gb|ACM13822.1| transcriptional regulatory protein [Bacillus cereus Q1]
gi|225789063|gb|ACO29280.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227007659|gb|ACP17402.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228585785|gb|EEK43883.1| Two-component response regulator [Bacillus cereus m1293]
gi|228597547|gb|EEK55194.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228626237|gb|EEK82984.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228643299|gb|EEK99572.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|228660411|gb|EEL16044.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228773020|gb|EEM21456.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228812462|gb|EEM58789.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228824772|gb|EEM70573.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830971|gb|EEM76572.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843428|gb|EEM88506.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268995|gb|ACQ50632.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|300377256|gb|ADK06160.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 225
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|323706155|ref|ZP_08117723.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534448|gb|EGB24231.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 231
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + L L K GY + +G +E+ L+L D+++P+MD
Sbjct: 1 MS-RILIVDDEKPIVEILKYNLEKNGYSTIEAYDGEEGLKMAQEKNPDLILLDVMLPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T ++KPF +R+L+ V L
Sbjct: 60 GFTVLRILRQ-TMTTPILMLTAKEEEVDKVLGLELGADDYVTKPFSMRELIARVKANLRR 118
>gi|23098049|ref|NP_691515.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
gi|22776274|dbj|BAC12550.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
Length = 229
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ + R L L GYE +NG A +K+ +E + L+L DI++P++
Sbjct: 1 MAERILIVEDEQKISRVLQLELEYEGYESEVASNGKDALNKIEQENWDLVLLDIMIPQLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + ++ +T V ++KPF + +L+ V L
Sbjct: 61 GLEVLRRVRRAENQTPIILLTARDEVHDKVSGLDLGANDYITKPFQIEELLARVRVHLR 119
>gi|261212177|ref|ZP_05926463.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. RC341]
gi|262402893|ref|ZP_06079454.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. RC586]
gi|260838785|gb|EEX65436.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. RC341]
gi|262351675|gb|EEZ00808.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
sp. RC586]
Length = 229
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L L + GY+ V + SA K+ E L+L D ++P
Sbjct: 1 MSRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E+ ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GINLIKHMKREEVTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229058210|ref|ZP_04196598.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
gi|228720074|gb|EEL71658.1| Transcriptional regulatory protein srrA [Bacillus cereus AH603]
Length = 238
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L DI+MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDIMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGIREK-KATPIIMLTAKGEEINRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|206972723|ref|ZP_03233660.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228950826|ref|ZP_04112951.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229068029|ref|ZP_04201338.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
gi|229077630|ref|ZP_04210261.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
gi|229176865|ref|ZP_04304262.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
gi|206732356|gb|EDZ49541.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228606613|gb|EEK64037.1| hypothetical protein bcere0005_2460 [Bacillus cereus 172560W]
gi|228705684|gb|EEL58039.1| hypothetical protein bcere0023_3340 [Bacillus cereus Rock4-2]
gi|228715096|gb|EEL66962.1| hypothetical protein bcere0025_2460 [Bacillus cereus F65185]
gi|228808856|gb|EEM55350.1| hypothetical protein bthur0006_2590 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 237
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNKYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|113478264|ref|YP_724325.1| two component transcriptional regulator [Trichodesmium erythraeum
IMS101]
gi|110169312|gb|ABG53852.1| two component transcriptional regulator, winged helix family
[Trichodesmium erythraeum IMS101]
Length = 257
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGYEV +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIAELVAVNLEMAGYEVSQAEDGIKGQALALQLLPDLIVLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEIEEMLARVRALLRR 121
>gi|332074558|gb|EGI85032.1| response regulator [Streptococcus pneumoniae GA17545]
Length = 234
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ N A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNSREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|291519643|emb|CBK74864.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + + +L + G EV +G A D + ++L D+++P++D
Sbjct: 1 MAKKVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGQEALDLATANHYDMILLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQSIRE-FSTVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|251796647|ref|YP_003011378.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247544273|gb|ACT01292.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+++L+ ED+ + R L L GY V + +G + Y+ + L+L D+++PE++
Sbjct: 1 MNERVLVVEDEAGISRILQLELEHEGYTVGTAADGRTGYEMASTGEWELVLLDVMLPELN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + V+ +T V ++KPF + +L+ V +L I
Sbjct: 61 GIEVLRRLRQAGNPVPVILLTARDTVPDKVSGFEHGANDYITKPFAMEELLARVRNILRI 120
>gi|153931133|ref|YP_001385668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153937245|ref|YP_001389074.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|152927177|gb|ABS32677.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152933159|gb|ABS38658.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 230
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + FL L K GY+V NG A DK+R E F+L+L DI+MP++D
Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYDVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R L ++ ++F+T + ++KPF L +L V+ +L
Sbjct: 61 GFEAIKRIRRLT-NIPIIFLTTKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119
>gi|111220157|ref|YP_710951.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Frankia alni ACN14a]
gi|111147689|emb|CAJ59345.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Frankia alni ACN14a]
Length = 240
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G++V++ G SA + L++ D+++P++DG E
Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTAATGRSALQLAVQARPDLMILDVMLPDVDGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+++T A ++KPF + +LV V +L
Sbjct: 66 VCRTLRAGGQSVPVVYLTARDAHRDKIAGLTYGGDDYVTKPFAVDELVARVRAVLRR 122
>gi|255523846|ref|ZP_05390810.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255512408|gb|EET88684.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 227
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++R + L GY ++ +NGA A + E F L++ D++MP +D
Sbjct: 1 MNINILVVDDDKNIRNLIKVYLENEGYNILEASNGAEALVMINENDFDLVILDVMMPILD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E + ++F++ +SKPF +L+ V L
Sbjct: 61 GISACIKIRENY-TMPIIFLSAKDEEIDKIQGLTVGADDYVSKPFGSMELIARVKAQLRR 119
>gi|89092214|ref|ZP_01165168.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanospirillum sp. MED92]
gi|89083302|gb|EAR62520.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanospirillum sp. MED92]
Length = 231
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ +L+ +D+ +R + AL AGY+ + N A+ + ++ ++L D +MP G
Sbjct: 4 SKSVLIVDDEAPIREMIAVALEMAGYQCLEAENANQAHGLIVDDKPDMVLLDWMMPGASG 63
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE ARR E D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 IEFARRLRKDETTADIPIIMLTAKGDEDNKIKGLEAGVDDYITKPFSPRELVARLKAVLR 123
Query: 120 I 120
Sbjct: 124 R 124
>gi|298250725|ref|ZP_06974529.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297548729|gb|EFH82596.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R F+ + L ++V+ ++G A + L++ DI++P MDG+E+
Sbjct: 7 ILVVDDEPGIRNFIRRNLELRAFKVLLASDGLEALAHFDQANVVLVILDIMLPNMDGLEV 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + + ++ +T A + L+KPF + +L+ V +L +
Sbjct: 67 CRRIRQK-STVPIVMLTALGEDADKIAALDQGADDYLTKPFSVGELMARVKAVLRRSH 123
>gi|293364634|ref|ZP_06611355.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
gi|307702891|ref|ZP_07639839.1| response regulator [Streptococcus oralis ATCC 35037]
gi|291316892|gb|EFE57324.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037]
gi|307623571|gb|EFO02560.1| response regulator [Streptococcus oralis ATCC 35037]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|228477380|ref|ZP_04062016.1| response regulator SaeR [Streptococcus salivarius SK126]
gi|228250815|gb|EEK10003.1| response regulator SaeR [Streptococcus salivarius SK126]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEINILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + P+ +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPNQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|121535008|ref|ZP_01666826.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121306421|gb|EAX47345.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 231
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+ + + L L K GY V++ +G A DK R+ ++L D+++P +DG
Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T A + KPF ++++ + +
Sbjct: 62 VCKEIR-RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRR 117
>gi|325264640|ref|ZP_08131370.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324030302|gb|EGB91587.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 233
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ NG A L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLVKECFDTKIVYNGEDALSAYETYHPGLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ V + KPF +++V V +L
Sbjct: 64 YQVCREIRAK-SSTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121
>gi|320533912|ref|ZP_08034489.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133876|gb|EFW26247.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 239
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L Y C++GA A D E L+L D+++P +D
Sbjct: 14 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDTFHEVNPDLVLLDLMLPGLD 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R D+ ++ +T ++KPF ++L+ V+ L
Sbjct: 74 GVEICRLIRSE-SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 132
Query: 121 KN 122
N
Sbjct: 133 TN 134
>gi|217958237|ref|YP_002336783.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229137451|ref|ZP_04266062.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|217067440|gb|ACJ81690.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228646009|gb|EEL02232.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 225
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A + + F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPTGYNCICARSGEEAISHIENQNFKFVLLDIMMPTMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKKIRS-FSNVPIIMVTARDQTIDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|187779154|ref|ZP_02995627.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
15579]
gi|187772779|gb|EDU36581.1| hypothetical protein CLOSPO_02749 [Clostridium sporogenes ATCC
15579]
Length = 230
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ ED+ + RFL L GYE+ +G DK E + L+L DI++P+++G
Sbjct: 6 KERILIVEDEVKISRFLQLELQYEGYEIEQAYDGREGLDKALNEKYDLILLDIMLPKLNG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ RR ++ D+ ++ +T ++KPF + +L+ + L K
Sbjct: 66 MEVCRRIRQI-SDIPIIMLTAKDETTDIVMGLDTGADDYITKPFAIEELLARIRVALKRK 124
>gi|163840387|ref|YP_001624792.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
gi|162953863|gb|ABY23378.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
Length = 242
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+E C +G+ A + R L+L D+++P +D
Sbjct: 19 MKARILVVDDDEALAEMIGIVLRNDGFEPFFCADGSQALEVFRAGKPDLVLLDLMLPGID 78
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R D+ V+ +T A + + KPF +LV V L
Sbjct: 79 GIEVCRLIRAE-SDVPVVMLTAKADTSDVVRGLESGGDDYVPKPFKPAELVARVRARLR 136
>gi|322376033|ref|ZP_08050543.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
gi|331265516|ref|YP_004325146.1| DNA-binding response regulator [Streptococcus oralis Uo5]
gi|321278983|gb|EFX56026.1| DNA-binding response regulator SaeR [Streptococcus sp. C300]
gi|326682188|emb|CBY99804.1| DNA-binding response regulator [Streptococcus oralis Uo5]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|326778918|ref|ZP_08238183.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|326659251|gb|EGE44097.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 267
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 43 MT-RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMD 101
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 102 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 161
>gi|229009770|ref|ZP_04166991.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
gi|228751506|gb|EEM01311.1| hypothetical protein bmyco0001_2410 [Bacillus mycoides DSM 2048]
Length = 266
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L + L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 34 RILIADDDKEIRDLLKRYLERELYMVDTAINGEEALCLFNKNNYNLVILDLMMPKVDGIE 93
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 94 VCRKLRDTT-NIPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 149
>gi|256833265|ref|YP_003161992.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
gi|256686796|gb|ACV09689.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
Length = 236
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++++ +D+ ++R L +L AG+EV + +G SA + + L++ D+++P++
Sbjct: 1 MSEARLVVVDDEPNIRELLATSLRFAGFEVFAAADGLSAIQLITDTTPDLVVLDVMLPDL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RR D V+F+T ++KPF L ++V + +L
Sbjct: 61 DGFEVTRRLRSKDIHSPVLFLTAKDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILR 120
Query: 120 IKN 122
N
Sbjct: 121 RTN 123
>gi|38234503|ref|NP_940270.1| putative two component system response regulator protein
[Corynebacterium diphtheriae NCTC 13129]
gi|38200766|emb|CAE50470.1| Putative two component system response regulator protein
[Corynebacterium diphtheriae]
Length = 236
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ ++L+ +D+ ++ L +L G+EV + +G A +K R + D++MP
Sbjct: 4 MNEYATRVLVVDDEPNIVELLKVSLKFQGFEVETAQSGIEALEKARSFQPDAFILDVMMP 63
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG EL + + V+++T AV ++KPF L +++ + +
Sbjct: 64 GMDGYELLPKLRADGFEGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVI 123
Query: 118 LTI 120
L
Sbjct: 124 LRR 126
>gi|322830982|ref|YP_004211009.1| transcriptional regulator [Rahnella sp. Y9602]
gi|321166183|gb|ADW71882.1| two component transcriptional regulator, winged helix family
[Rahnella sp. Y9602]
Length = 239
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|238925262|ref|YP_002938779.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
gi|238876938|gb|ACR76645.1| hypothetical protein EUBREC_2916 [Eubacterium rectale ATCC 33656]
gi|291524452|emb|CBK90039.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
gi|291527504|emb|CBK93090.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 233
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K Y+ N+G A ++LL D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECYDTKIVNDGEQALIAFEHYKPNMLLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SDVPIIMLSAKGEVFDKVLGLELGADDYILKPFDSKELVARVKAVLRR 121
>gi|146321223|ref|YP_001200934.1| response regulator [Streptococcus suis 98HAH33]
gi|253753905|ref|YP_003027046.1| response regulator protein [Streptococcus suis P1/7]
gi|253755220|ref|YP_003028360.1| response regulator protein [Streptococcus suis BM407]
gi|330832445|ref|YP_004401270.1| response regulator [Streptococcus suis ST3]
gi|145692029|gb|ABP92534.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Streptococcus suis
98HAH33]
gi|251817684|emb|CAZ55432.1| response regulator protein [Streptococcus suis BM407]
gi|251820151|emb|CAR46488.1| response regulator protein [Streptococcus suis P1/7]
gi|292558663|gb|ADE31664.1| Response regulator receiver: Transcriptional regulatory protein,
C-terminal [Streptococcus suis GZ1]
gi|319758447|gb|ADV70389.1| response regulator [Streptococcus suis JS14]
gi|329306668|gb|AEB81084.1| response regulator [Streptococcus suis ST3]
Length = 234
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + + GYEVV+ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|28493014|ref|NP_787175.1| two-component system response regulator [Tropheryma whipplei str.
Twist]
gi|28476054|gb|AAO44144.1| two-component system response regulator [Tropheryma whipplei str.
Twist]
Length = 251
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q KIL+ +D+ ++R L +L AGY VV+ NGA A V E L++ D+++P+M
Sbjct: 25 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 84
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G +R E V+F++ + ++KPF L +++ V +L
Sbjct: 85 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILR 144
Query: 120 I 120
Sbjct: 145 R 145
>gi|125974418|ref|YP_001038328.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256005869|ref|ZP_05430817.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281418944|ref|ZP_06249962.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|125714643|gb|ABN53135.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|255990173|gb|EEU00307.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281407401|gb|EFB37661.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|316941557|gb|ADU75591.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 228
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED++D+ F+++ L + G+ + G A V E ++L DI++P++D
Sbjct: 1 MGAKILIVEDENDIGSFMVRTLNRKGFNAIRAETGKEALRLVELEKPEVILLDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R + P++ ++ +T + KPF+ +L+ + ++
Sbjct: 61 GFEICKRVSRQHPEISIIMVTARGEDVDKIRGLELGADDYIIKPFNPMELIARIKAVIRR 120
Query: 121 KN 122
N
Sbjct: 121 TN 122
>gi|332666462|ref|YP_004449250.1| winged helix family two component transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
gi|332335276|gb|AEE52377.1| two component transcriptional regulator, winged helix family
[Haliscomenobacter hydrossis DSM 1100]
Length = 226
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 63/117 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED++++R + L +EVV+ NG A +E+ F L++ D+++PE+DG +
Sbjct: 2 RILLVEDEENIRDVVKLNLELENFEVVATGNGRDAIRYFQEQHFDLIILDVMLPEIDGFQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D ++ V+F+T AV L+KPF L +L+ +N L+
Sbjct: 62 ICEQIRLTDMEVPVIFLTAKDAVGDRISGLKRGADDYLTKPFVLEELLLRINNLIKR 118
>gi|302867106|ref|YP_003835743.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|302569965|gb|ADL46167.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
Length = 238
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +DD + + + L + G V +G A EEP L++ D++MP +D
Sbjct: 7 MGRYVLVVDDDRTVSDVVRRYLEQDGCRVRLSFDGPDALATAEEEPPDLVVLDLMMPGLD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR P L V+ +T A ++KPF R+LV + +L
Sbjct: 67 GIEVCRRLRRRLPGLPVVMLTALGDEADRVAGLEVGADDYVTKPFSPRELVLRIRSVLRR 126
>gi|270263528|ref|ZP_06191797.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270042412|gb|EFA15507.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 229
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229177365|ref|ZP_04304748.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|228606088|gb|EEK63526.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
Length = 232
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD + + L K GY+VV +G +A + ++ + L++ DI+MP+MDG E
Sbjct: 5 TILIADDDLKIAELIEIHLKKEGYQVVKATDGEAAIEIIQSQAIDLVVLDIMMPKMDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ ++F++ + ++KPF +LV VN L
Sbjct: 65 VTRQIR-TKQNMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120
>gi|227432429|ref|ZP_03914417.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227351795|gb|EEJ42033.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 234
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L L + GYEV ++G SAY K +E+ F+ +L D+++PEMD
Sbjct: 5 MT-KILVVDDETAIATLLQYNLQQNGYEVTVASDGLSAYQKAKEQQFNAILLDLMLPEMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF R++V + +L
Sbjct: 64 GMTVLKQLRQDKVSTPIILVTAKGDELDRVLGLELGADDYITKPFSPREVVARLKAVLRR 123
>gi|261408536|ref|YP_003244777.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261284999|gb|ACX66970.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 231
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL +D++++ F+ +L GY V++ +G A + + SL++ D++MPEMDG
Sbjct: 5 NETILLVDDEEEIISFIQDSLELEGYHVLTAGSGQEALIQ-SKRQPSLIILDVMMPEMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE+ ++ E ++F++ + A L KPF L +L ++ L +
Sbjct: 64 IEVCKQLRETT-QCPIVFLSARQSEVDRIKGLAAGGDDYLLKPFSLAELKARIHAHLRRE 122
>gi|150392434|ref|YP_001322483.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149952296|gb|ABR50824.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 229
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + L L K GY + ++G A KV E L+L D+++P++D
Sbjct: 1 MEKKILIVEDEKPIADILKFNLEKEGYRIEMAHDGEDALKKVSEFIPDLVLLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E + ++ +T ++KPF +R+L+ VN
Sbjct: 61 GFQVCRKIRESFS-MPILMLTAKEEEVDKVLGLEIGADDYITKPFGMRELLARVNANFRR 119
>gi|167038191|ref|YP_001665769.1| two component transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039100|ref|YP_001662085.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|256750939|ref|ZP_05491823.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|300913310|ref|ZP_07130627.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307723676|ref|YP_003903427.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|320116600|ref|YP_004186759.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166853340|gb|ABY91749.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|166857025|gb|ABY95433.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|256750274|gb|EEU63294.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|300889995|gb|EFK85140.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307580737|gb|ADN54136.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
gi|319929691|gb|ADV80376.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 225
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D++ + L +L + G+EV + +G DKVR + L++ DI++P++DG
Sbjct: 2 EKLLIIDDEEMFVKGLKLSLEEEGFEVDAAYDGEEGLDKVRLGNYDLVILDIMLPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T L+KPF+ R+L + LL
Sbjct: 62 SVCREIR-TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELTARIRALLRR 118
>gi|120406123|ref|YP_955952.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958941|gb|ABM15946.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 236
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + +NG +A DK RE ++ D++MP MDG
Sbjct: 11 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 71 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 127
>gi|2108342|emb|CAA70146.1| OmpR protein [Yersinia enterocolitica]
Length = 239
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|28572226|ref|NP_789006.1| two component system response regulator [Tropheryma whipplei
TW08/27]
gi|28410357|emb|CAD66743.1| putative two component system response regulator [Tropheryma
whipplei TW08/27]
Length = 227
Score = 153 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q KIL+ +D+ ++R L +L AGY VV+ NGA A V E L++ D+++P+M
Sbjct: 1 MSQTKILVVDDEANIRDLLAASLRFAGYGVVTAGNGAGAVSAVLAEEPDLIIMDVMLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G +R E V+F++ + ++KPF L +++ V +L
Sbjct: 61 SGFAATKRLREAGFRCPVIFLSARDSTEDKITGLTVGGDDYVTKPFSLDEILARVAAILR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|156743164|ref|YP_001433293.1| response regulator receiver modulated diguanylate cyclase
[Roseiflexus castenholzii DSM 13941]
gi|156234492|gb|ABU59275.1| response regulator receiver modulated diguanylate cyclase
[Roseiflexus castenholzii DSM 13941]
Length = 443
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+A+D+ +R+ L L GYEV NG +E L++ D++MP+MD
Sbjct: 1 MTKRILIADDEPAVRQLLELVLRSQGYEVFVTQNGDQLVRTAQEWIPDLVIVDLMMPQMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E R+ + ++ +T + ++KPF++ +L+ + L
Sbjct: 61 GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYITKPFNIPELLARIRAHL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|47096094|ref|ZP_00233695.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
1/2a F6854]
gi|258611481|ref|ZP_05232763.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
N3-165]
gi|258612273|ref|ZP_05269478.2| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
gi|293596673|ref|ZP_05263412.2| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
gi|17351932|gb|AAL38202.1|AF319446_1 putative response regulator RR62 [Listeria monocytogenes]
gi|47015555|gb|EAL06487.1| DNA-binding response regulator PhoP [Listeria monocytogenes str.
1/2a F6854]
gi|258600460|gb|EEW13785.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
N3-165]
gi|258610384|gb|EEW22992.1| DNA-binding response regulator PhoP [Listeria monocytogenes F6900]
gi|293591406|gb|EFF99740.1| DNA-binding response regulator PhoP [Listeria monocytogenes J2818]
Length = 240
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|226327576|ref|ZP_03803094.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
gi|225204102|gb|EEG86456.1| hypothetical protein PROPEN_01447 [Proteus penneri ATCC 35198]
Length = 240
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +DD +R L + L + G+++ + N + E L++ D+++P DG
Sbjct: 4 SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANADQMDRLLTRESIHLIVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T +SKPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQ 123
>gi|254456179|ref|ZP_05069608.1| phosphate regulon transcriptional regulatory protein PhoB
[Candidatus Pelagibacter sp. HTCC7211]
gi|207083181|gb|EDZ60607.1| phosphate regulon transcriptional regulatory protein PhoB
[Candidatus Pelagibacter sp. HTCC7211]
Length = 227
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ + +AED+ + L L K G++V C NG A +++++ L+L D ++P++
Sbjct: 1 MSAHVFIAEDETSIVTLLKYNLEKEGHKVSFCENGEEALKQIKDKQPDLILMDWMLPDLS 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ + + D+ ++ +T + ++KPF ++L + LL
Sbjct: 61 GVDICKNLKKDKKFNDIPIIMLTAKGEEEDKLKAFDTGADDYVTKPFSQKELNARIKSLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|261408699|ref|YP_003244940.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261285162|gb|ACX67133.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 243
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ ED+ + R L L + G++V +G + Y+K + + L+L D+++P M+
Sbjct: 1 MTQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + ++ +T A ++KPF + +L+ V+ ++
Sbjct: 61 GFQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 120
>gi|148378355|ref|YP_001252896.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153933802|ref|YP_001382754.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153934962|ref|YP_001386305.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|153938363|ref|YP_001389720.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|168177695|ref|ZP_02612359.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|148287839|emb|CAL81905.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152929846|gb|ABS35346.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152930876|gb|ABS36375.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|152934259|gb|ABS39757.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|182670981|gb|EDT82955.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|295317808|gb|ADF98185.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 228
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K R+ +++ DI++P +DG+E
Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + P++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|325294901|ref|YP_004281415.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065349|gb|ADY73356.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 223
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL EDD+D+ L L K ++V +G A +K++ + L++ D+++P G+++
Sbjct: 3 VLLVEDDEDLGELLKYNLEKNQFKVDWTLDGKEALEKIKTNSYDLIILDLMLPGASGLDI 62
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ D+ V+ +T + + ++KPF +++L+ + +L
Sbjct: 63 CKEIRENSINKDVPVIVLTALSDEDTKVKGFSIGADDYVTKPFSMKELLARIEAVLRR 120
>gi|304404458|ref|ZP_07386119.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304346265|gb|EFM12098.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 232
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ ED++ + R L L Y V +G + + + L+L D+++P ++
Sbjct: 1 MNERILVIEDEEGISRVLQLELEHESYTVGVAEDGRKGLEMAQSGEWDLVLLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + V+ +T V + ++KPF + +L+ V +L I
Sbjct: 61 GIEVLRRLRQGGNTVPVILLTARDTVPDKVSGFEHGASDYVTKPFAMEELLARVRNILRI 120
>gi|323340181|ref|ZP_08080445.1| response regulator [Lactobacillus ruminis ATCC 25644]
gi|323092372|gb|EFZ34980.1| response regulator [Lactobacillus ruminis ATCC 25644]
Length = 245
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L KAGY V + + G SAY+ + +L D+++P MDGI
Sbjct: 8 KKILVVDDEKAIVTLLEYNLKKAGYSVDTVSEGVSAYNMAVTGKYDFILLDLMLPGMDGI 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR + + ++ +T L+KPF R+++ + ++ +
Sbjct: 68 EITRRLRQERIETPIIILTARDQEYDKIIGLELGADDYLTKPFSPREVIARIKA-ISRR 125
>gi|187925552|ref|YP_001897194.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|187716746|gb|ACD17970.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 242
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD +R + L G++V + NG + ++++E +L++ DI+MPE+D
Sbjct: 1 MNQSILVVDDDPVVRELVSGYLQGRGFKVDTLQNGLALQRRLQDERPALIVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T + L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARSDPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|145594416|ref|YP_001158713.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145303753|gb|ABP54335.1| response regulator receiver modulated diguanylate cyclase
[Salinispora tropica CNB-440]
Length = 326
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+D+ RF+ L GYEV+ +G A + + L + D++MP +DG+EL
Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGYEVIHAGDGQEALEVIARHRPDLAVVDLMMPRVDGLEL 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + L V+ +T + L KPF +LV V+ L
Sbjct: 71 TRRLRADPMTAVLPVIMLTAKGMTVDKVHGLSAGADDYLVKPFDTAELVARVSSTLRR 128
>gi|304439017|ref|ZP_07398937.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372506|gb|EFM26092.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 228
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +D+ + + L + GYE +C+NG + +++ + LL+ D++MP++D
Sbjct: 1 MN-RVLVCDDETAIADIIKFNLKREGYEADTCSNGEECLEILKDNEYDLLILDVMMPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R + + V+ +T + KPF +R+L+ V L
Sbjct: 60 GFETLRELRK-FSYIPVIMLTAKDDEVDRVLGLELGADDYVVKPFSMRELIARVKANLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|160937676|ref|ZP_02085036.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
BAA-613]
gi|158439321|gb|EDP17073.1| hypothetical protein CLOBOL_02566 [Clostridium bolteae ATCC
BAA-613]
Length = 236
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD ++ + L K YE + +G A E +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDANIAELISLYLMKECYETMIVGDGEEALKVFPEFKPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + V+ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCRELRA-SSQVPVIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator
[Prochlorococcus marinus str. NATL2A]
gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family
[Prochlorococcus marinus str. NATL2A]
Length = 242
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G++V + +G ++K ++ ++++D++MP DG
Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E + V+F+T A + KPF +LV V ++ +
Sbjct: 76 LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQRQ 135
>gi|147669577|ref|YP_001214395.1| two component transcriptional regulator [Dehalococcoides sp. BAV1]
gi|146270525|gb|ABQ17517.1| two component transcriptional regulator, winged helix family
[Dehalococcoides sp. BAV1]
Length = 227
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+A+D+ + L L + G+ V++ +G +A K EE L++ D+++PE+
Sbjct: 1 MPKKILIADDEKRIAEILQAYLEREGFRVIATYDGKTALAKFHEENPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + ++ +T + ++KPF ++LV V L
Sbjct: 61 GWDVCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFESKELVARVKVQLRR 119
>gi|186686379|ref|YP_001869575.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468831|gb|ACC84632.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 232
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L + GY V + +G + + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTEPLSRLLTREGYIVDAAFDGTIGSEYAQAGSYDLLILDWMLPGKTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQQLRRQGKTTPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|329944314|ref|ZP_08292573.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
str. F0386]
gi|328531044|gb|EGF57900.1| DNA-binding response regulator MtrA [Actinomyces sp. oral taxon 170
str. F0386]
Length = 226
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + + L Y C++GA A D E L+L D+++P +D
Sbjct: 1 MSTRILVVDDDASLAEMIGIMLESESYTPTLCHDGAKALDAFHEVSPDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R D+ ++ +T ++KPF ++L+ V+ L
Sbjct: 61 GVEICRLIRSE-SDVPIIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVSTRLRR 119
Query: 121 KN 122
N
Sbjct: 120 TN 121
>gi|154482504|ref|ZP_02024952.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
27560]
gi|149736634|gb|EDM52520.1| hypothetical protein EUBVEN_00171 [Eubacterium ventriosum ATCC
27560]
Length = 231
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M Q KIL+ +D+D MR+ + L + YEVV +NG A D L++ D++MP+
Sbjct: 7 MKQLKILVVDDEDRMRKLVRDFLVRKQYEVVEASNGEEAVDVFVESNDIDLIILDVMMPK 66
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E R ++ + ++ +T + + + +SKPF R LV V+ +L
Sbjct: 67 MDGWEACREIRKI-SKVPIIMLTAKSEESDELLGFELGVDEYISKPFSPRILVARVDAIL 125
Query: 119 TIKN 122
N
Sbjct: 126 RRTN 129
>gi|65320879|ref|ZP_00393838.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
Length = 225
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKKALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|332638568|ref|ZP_08417431.1| DNA-binding response regulator [Weissella cibaria KACC 11862]
Length = 237
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L L K+G+EVV+ +G A +++ P L+L D+++P G++
Sbjct: 3 TILVVDDEPSLVTLLSYNLTKSGFEVVTATSGDEARNQLANHPIDLMLLDVMLPGKSGVD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ IT ++KPF R+++ V +L
Sbjct: 63 LTRELRGEQNRIPIIMITALDDEVDKILGLEIGADDYVTKPFSPREVIARVRAVLRR 119
>gi|226941119|ref|YP_002796193.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
gi|226716046|gb|ACO75184.1| DNA-binding response regulator [Laribacter hongkongensis HLHK9]
Length = 233
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD D+R L L + G+ V +G +A D + + LL+ D+ MP D
Sbjct: 1 MN-HILVVDDDSDIRDVLGLLLQRHGFAVTCVADGVAALDLLARQHVDLLVLDVNMPGPD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ E L ++F++ A L KPF +LV + L
Sbjct: 60 GLEVCRQLRERAAVLPILFLSALGREADKVAGLMAGGDDYLVKPFSSAELVARITAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 VN 121
>gi|188585611|ref|YP_001917156.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350298|gb|ACB84568.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 246
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ILL ED+ + + + L K GYEV +G A++K E + L++ D+++P +DG+
Sbjct: 2 HRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDGL 61
Query: 63 ELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R+ + V+ +T + ++KPF R+L+ V L +
Sbjct: 62 EVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRGR 121
>gi|238794386|ref|ZP_04637997.1| Transcriptional regulator in 2-component system [Yersinia
intermedia ATCC 29909]
gi|238726287|gb|EEQ17830.1| Transcriptional regulator in 2-component system [Yersinia
intermedia ATCC 29909]
Length = 232
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A + + + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|262200820|ref|YP_003272028.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262084167|gb|ACY20135.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length = 241
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++++R+ L +L GYEV + +G +A D+ R L+ D++MP MDG
Sbjct: 15 KILVVDDEENIRQLLSVSLKFQGYEVETAESGPAAIDRCRTFKPDALILDVMMPGMDGFG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + +F++ +V + ++KPF L ++V + LL
Sbjct: 75 LLRRLRADGIEAPALFLSARDSVEDKINGLTIGGDDYVTKPFSLEEVVARLQVLLRR 131
>gi|260494747|ref|ZP_05814877.1| phosphate regulon transcriptional regulatory protein PhoB
[Fusobacterium sp. 3_1_33]
gi|260197909|gb|EEW95426.1| phosphate regulon transcriptional regulatory protein PhoB
[Fusobacterium sp. 3_1_33]
Length = 224
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L K + V S +G A + + + L++ DI++P+M+G E
Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T A+ L KPF +L+ + ++ K
Sbjct: 62 VVKNLRANKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRK 119
>gi|170754525|ref|YP_001780005.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169119737|gb|ACA43573.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 228
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K R+ +++ DI++P +DG+E
Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPDVVVLDIMLPGVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + P++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|78101053|pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
gi|78101054|pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
gi|78101055|pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|33312479|gb|AAQ04067.1|AF432143_2 two-component response regulator [Paenibacillus popilliae]
gi|40363826|gb|AAR84672.1| two-component response regulator [Paenibacillus popilliae]
Length = 231
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+A+DD ++ + L K GY V+ ++G D ++ +P LL+ DI+MP+MDG
Sbjct: 3 NITILIADDDAEIADLVAIHLEKEGYRVIKVSDGQETIDVIQNQPIDLLILDIMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E ++ ++F++ + ++KPF +LV VN L
Sbjct: 63 FEVTRRIREKH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFIPIELVARVNAQLRR 120
>gi|71277926|ref|YP_271244.1| osmolarity response regulator [Colwellia psychrerythraea 34H]
gi|71143666|gb|AAZ24139.1| transcriptional regulatory protein OmpR [Colwellia psychrerythraea
34H]
Length = 240
Score = 153 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q KIL+ +DD +R L + L + G+ V S N + E F LL+ D+++P
Sbjct: 1 MTQETPKILVVDDDMRLRSLLERYLVEQGFTVRSAANSEQMDRLLERENFHLLVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR + ++ ++ +T + KPF+ R+L+ + +
Sbjct: 61 GEDGLSICRRLRQNSNNIPIVMLTAKGDEVDRIIGLELGADDYMPKPFNPRELLARIKAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRR 124
>gi|322385035|ref|ZP_08058685.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
gi|321270945|gb|EFX53855.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
Length = 233
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEV++ +G A + E +L+ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++AR + ++ ++ ++ + ++KPF R+L+ V LL
Sbjct: 62 DVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELLARVKALLRR 118
>gi|298247426|ref|ZP_06971231.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297550085|gb|EFH83951.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 239
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL A+DD + R + + L YEV++ ++G A V ++ L+L D++MP +DG +
Sbjct: 8 ILTADDDSQLLRLVSRNLELEDYEVLTASDGEQALAIVEKQLPDLILLDVMMPRVDGFTV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ IT L+KPF + +L+ V +L
Sbjct: 68 CKHIRE-FSMVPIIIITARGQDRDKVKGLDLGADDYLTKPFSIEELLARVRAVLRR 122
>gi|225567872|ref|ZP_03776897.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
15053]
gi|225163350|gb|EEG75969.1| hypothetical protein CLOHYLEM_03945 [Clostridium hylemonae DSM
15053]
Length = 229
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +D+ + + + +L + G +V +G A RE + ++L D+++P+ D
Sbjct: 1 MSKRVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLSRENAYDMILLDVMLPKYD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E D+ V+ +T ++KPF++ ++ + ++
Sbjct: 61 GFQVCQQIRE-FSDVPVVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|197335063|ref|YP_002156819.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
fischeri MJ11]
gi|197316553|gb|ACH66000.1| phosphate regulon transcriptional regulatory protein PhoB [Vibrio
fischeri MJ11]
Length = 230
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GYE + + SA + E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|145301083|ref|YP_001143924.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142853855|gb|ABO92176.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 240
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ +DD ++R L + L +AG++V++ G ++ L++ DI+MP DG
Sbjct: 4 SKQLLIVDDDQEIRELLNEYLTRAGFQVLTAAEGNEMRQQLALHSPDLIILDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ D + ++ +T + A ++KPF R+L + LL
Sbjct: 64 FTLCQQIR-RDSQVPIIMLTAASDEADRVIGLELGADDYIAKPFSPRELQARIKALLRR 121
>gi|83816273|ref|YP_446921.1| response regulator receiver domain-containing protein [Salinibacter
ruber DSM 13855]
gi|294508860|ref|YP_003572919.1| Response regulator receiver, transcriptional regulatory protein
[Salinibacter ruber M8]
gi|83757667|gb|ABC45780.1| response regulator receiver domain protein [Salinibacter ruber DSM
13855]
gi|294345188|emb|CBH25966.1| Response regulator receiver, transcriptional regulatory protein
[Salinibacter ruber M8]
Length = 247
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ D+ F+ + L + GYEV G D R+ L+L DI +P++ G+E
Sbjct: 6 HLLLVEDEPDVASFVQQGLNEEGYEVSWVEAGRRGLDYARQGGIDLVLLDIRLPDLSGLE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P+L ++ +T AV L KPF +L+ + LL
Sbjct: 66 VCERLRLHRPELPILMLTALDAVEDRVRGLRAGADDYLPKPFAFDELLARIEALLRR 122
>gi|148976493|ref|ZP_01813189.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
gi|145964069|gb|EDK29326.1| osmolarity response regulator [Vibrionales bacterium SWAT-3]
Length = 239
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
Length = 242
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G++V + +G ++K ++ ++++D++MP DG
Sbjct: 16 RILLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEEGWEKAQKMIPDVIISDVMMPRCDGYG 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E + V+F+T A + KPF +LV V ++ +
Sbjct: 76 LLKKIREDERLGGTPVIFLTAKGMTADRTQGYQAGVDDYMPKPFDPDELVARVKNVVQRQ 135
>gi|59712595|ref|YP_205371.1| DNA-binding response regulator in two-component regulatory system
with PhoR [Vibrio fischeri ES114]
gi|59480696|gb|AAW86483.1| DNA-binding response regulator in two-component regulatory system
with PhoR [Vibrio fischeri ES114]
Length = 230
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GYE + + SA + E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMLCFVLEQKGYEPIEAEDYDSALSLLCEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDEFTKKIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|331000973|ref|ZP_08324610.1| transcriptional regulatory protein OmpR [Parasutterella
excrementihominis YIT 11859]
gi|329569932|gb|EGG51689.1| transcriptional regulatory protein OmpR [Parasutterella
excrementihominis YIT 11859]
Length = 260
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L + L G+ V N E F ++ D++MP DGI
Sbjct: 21 RILVVDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGIS 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T L KP++ R+L+ ++ +L +
Sbjct: 81 ILKRIRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRR 138
>gi|229074320|ref|ZP_04207360.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
gi|229094989|ref|ZP_04225986.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
gi|229113942|ref|ZP_04243369.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
gi|228669516|gb|EEL24931.1| hypothetical protein bcere0017_2490 [Bacillus cereus Rock1-3]
gi|228688433|gb|EEL42314.1| hypothetical protein bcere0020_2480 [Bacillus cereus Rock3-29]
gi|228708807|gb|EEL60940.1| hypothetical protein bcere0024_2450 [Bacillus cereus Rock4-18]
Length = 237
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ DI+MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDIMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|150378255|ref|YP_001314850.1| two component transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150032802|gb|ABR64917.1| two component transcriptional regulator, winged helix family
[Sinorhizobium medicae WSM419]
Length = 239
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I + +D D+R + K L GY V +G + + + L++ DI+MP DG+
Sbjct: 6 HIAVVDDHRDIRDLVGKYLTHQGYRVSVAESGEALRRILEKGAPDLVVLDIMMPGEDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ +L V+F+T A ++KPF+ R+L+ + +L N
Sbjct: 66 VCRQLRTTT-ELPVIFLTAMADGTDRIVGLELGADDYITKPFNPRELLARIRAVLRRVN 123
>gi|116750317|ref|YP_847004.1| two component transcriptional regulator [Syntrophobacter
fumaroxidans MPOB]
gi|116699381|gb|ABK18569.1| two component transcriptional regulator, winged helix family
[Syntrophobacter fumaroxidans MPOB]
Length = 227
Score = 152 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ EDD D+ L + AG++VV +G +A + VR P L++ D+++P +DG
Sbjct: 3 KARILIVEDDSDILHLLAYNIEAAGFDVVKAMDGNTALEMVRRHPPDLVVLDLMIPGIDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + + V+ +T + KPF R+L+ + +L
Sbjct: 63 FEVCKELKRGAETRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAILR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|317484883|ref|ZP_07943773.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923865|gb|EFV45061.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R L L K GY V +G + R L+L D+++P+MDG
Sbjct: 5 SATILIVEDEQDIRELLAYNLEKEGYATVQAADGKEGLELARSRKPDLILLDLMLPKMDG 64
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + R E D + ++ +T + KPF++R+L+ + +L
Sbjct: 65 LAVCREL-ERDSGTVRIPIIMLTARGEDVDRILGFELGADDYVVKPFNIRELLLRIRAIL 123
Query: 119 TIK 121
+
Sbjct: 124 RRQ 126
>gi|188534673|ref|YP_001908470.1| Response regulator in two-component regulatory system with PhoR
[Erwinia tasmaniensis Et1/99]
gi|188029715|emb|CAO97594.1| Response regulator in two-component regulatory system with PhoR
[Erwinia tasmaniensis Et1/99]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y + + SA + E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYHPIEAADYDSAVSLLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|154686839|ref|YP_001422000.1| YrkP [Bacillus amyloliquefaciens FZB42]
gi|154352690|gb|ABS74769.1| YrkP [Bacillus amyloliquefaciens FZB42]
Length = 231
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD D+ L ++L ++GYEV++ +G A V + L++ DI+MP +
Sbjct: 1 MTHRILVVEDDRDIGDLLEESLTRSGYEVLTAKDGKRALQLV-NDSLDLVILDIMMPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + + ++ ++F+T ++ + ++KPF +L V L
Sbjct: 60 GIETCQHIRK-TSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>gi|152975591|ref|YP_001375108.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152024343|gb|ABS22113.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 232
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY++ +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYDIYKAYDGDEALQMLSMYEIDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E + + ++ ++ A + KPF+ +L+ V LL
Sbjct: 61 GLEVCQQVREHNNTVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELMARVKALLRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|114563933|ref|YP_751447.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114335226|gb|ABI72608.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L + + G+ + + SA + ++E L+L D + P
Sbjct: 1 MTARILIVEDESAIREMLTFVMDQHGFTTAAAEDFDSAIELLKEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA+R E + ++ +T ++KPF ++LV + +L
Sbjct: 61 GIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|269216256|ref|ZP_06160110.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
gi|269130515|gb|EEZ61593.1| DNA-binding response regulator RegX3 [Slackia exigua ATCC 700122]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + F+ +L K G+ V + NG + + L + DI++P MDG EL
Sbjct: 8 ILIVDDEQSITDFVSYSLKKEGFSVDTAANGEEGLAAAMRKDYDLFILDIMLPGMDGYEL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+F++ L+KPF +R+L+ V LL
Sbjct: 68 CRRLRARTAS-PVLFLSARDTELDKVVGLEIGGDDYLAKPFGVRELIARVRALLRR 122
>gi|118471457|ref|YP_890099.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
MC2 155]
gi|118172744|gb|ABK73640.1| DNA-binding response regulator PhoP [Mycobacterium smegmatis str.
MC2 155]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + +NGA+A DK RE ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGAAALDKAREVRPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|157369284|ref|YP_001477273.1| two component transcriptional regulator [Serratia proteamaculans
568]
gi|157321048|gb|ABV40145.1| two component transcriptional regulator, winged helix family
[Serratia proteamaculans 568]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|225016728|ref|ZP_03705920.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
DSM 5476]
gi|224950532|gb|EEG31741.1| hypothetical protein CLOSTMETH_00638 [Clostridium methylpentosum
DSM 5476]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD ++ L L K GY V+ ++G A K +L D+++P +DG
Sbjct: 4 EKILVVDDDKNICELLRLYLEKEGYGVILSHDGEEALVKFNALKPDFVLLDVMLPGLDGW 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ V+ +T + KPF ++++ + +
Sbjct: 64 QVCREIRKK-SNVPVIMLTAKGETFDKVLGLELGADDYVVKPFDTKEIIARIKAIHRR 120
>gi|313900973|ref|ZP_07834463.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312954393|gb|EFR36071.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ ++R + L GYEV +G +A K E L++ D++MP+MD
Sbjct: 11 MGSRILIVDDNQEIREVVTVLLENEGYEVEEAGDGEAAVAKA--EDMDLIILDVMMPKMD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E+ + ++F+T + L+KPF +L+ V LL
Sbjct: 69 GFKACRQIREVT-NAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 127
>gi|228924395|ref|ZP_04087631.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228835257|gb|EEM80662.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+D +R + L GYE++ +G A E L++ DI++PE+D
Sbjct: 1 MQRKILIVEDEDILREIVKDYLLNDGYEILEATDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWSVCRRIRK-TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|221195251|ref|ZP_03568307.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
49626]
gi|221185154|gb|EEE17545.1| transcriptional regulatory protein ResD [Atopobium rimae ATCC
49626]
Length = 241
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ +R + L + Y V +G SA ++ ++ F L++ D+++P++ G
Sbjct: 6 KRILIVEDETVIRDAVSAYLERENYAVRGVGDGQSAVEEFQKHSFDLVILDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ ++ ++ +T V L KPF R+LV V L +
Sbjct: 66 RVCRAIRDV-SNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRRAH 124
>gi|251796137|ref|YP_003010868.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247543763|gb|ACT00782.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 224
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L G+EV+ ++G A + L++ D++MP MDG EL
Sbjct: 4 ILVVDDDLHIRELISHYLKVEGFEVLEASDGVEALTILDSAKADLVIMDVMMPNMDGWEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ DL + +T A L KPF +L+ V LL
Sbjct: 64 CAEIRDHY-DLPRLMLTAKGETAQKLKGFELGADDYLVKPFEPLELIARVKALLKR 118
>gi|73662569|ref|YP_301350.1| respiratory response protein SrrA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495084|dbj|BAE18405.1| staphylococcal respiratory response protein SrrA [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 241
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +RR L L + +E+ N+G AY E ++ +L D+++PEMD
Sbjct: 1 MSNEILIVDDEDRIRRLLKLYLERESFEIHEANDGNEAYRMAMEHDYACILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI +A + E + ++ +T + + KPF R++V V LL
Sbjct: 61 GITVASKLRE-HKETPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRR 119
>gi|223932685|ref|ZP_03624684.1| two component transcriptional regulator, winged helix family
[Streptococcus suis 89/1591]
gi|223898655|gb|EEF65017.1| two component transcriptional regulator, winged helix family
[Streptococcus suis 89/1591]
Length = 234
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + + GYEVV+ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|162419398|ref|YP_001607632.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis Angola]
gi|162352213|gb|ABX86161.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis Angola]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 2 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 61
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 62 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 121
Query: 119 TI 120
Sbjct: 122 RR 123
>gi|37520429|ref|NP_923806.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35211423|dbj|BAC88801.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 238
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 48/116 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + + + L AG+ +G A L++ D ++P +DG+ L
Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + A L KPF ++LV V LL
Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR 129
>gi|83648723|ref|YP_437158.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83636766|gb|ABC32733.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 242
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ I++ +DD ++R+ L + L K G++V +G + + + L++ DI++P DG
Sbjct: 5 NKHIVVVDDDLEIRQLLSQYLSKNGFDVSPAEDGETLFKLLEGVTPDLIILDIMLPGDDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + ++ +T A ++KPF+ R+L+ + +L
Sbjct: 65 FTICQRLRK-SSTVPIIMLTANADDTDRIVGLEMGADDYIAKPFNPRELLARMKAILRR 122
>gi|17229228|ref|NP_485776.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17130826|dbj|BAB73435.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 231
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + L ++G+ V +N +D +++ L+++D++MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVKDYLQESGFSVQVASNAREGWDLMQQSTPDLVISDVMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E L V+F+T + L KPF +LV V LL
Sbjct: 61 GYQFLKQLREDPRFQSLPVVFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELVAIVENLL 120
Query: 119 TIKN 122
+N
Sbjct: 121 IRRN 124
>gi|89893823|ref|YP_517310.1| hypothetical protein DSY1077 [Desulfitobacterium hafniense Y51]
gi|89333271|dbj|BAE82866.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ M+ + L GY+ ++ +G A + + + L+L DI+MP++D
Sbjct: 2 MKKIILIVEDEPRMQTIIADYLEDEGYQTLAAAHGIEALELFKSKRVDLILLDIMMPKLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + D + ++ +T +A ++KPF L+ LV ++N LL
Sbjct: 62 GLSVCRTIRKQDSRVLIIMLTAKSAENDKLLGYEYGADDYITKPFSLKVLVAKINALLKR 121
>gi|303241736|ref|ZP_07328233.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302590737|gb|EFL60488.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN K +L+ +DD ++ + + K G+EV++ NG A + + ++++ DI++P
Sbjct: 1 MNNKTKVLVIDDDVNICELIRLYMEKEGFEVLTIYNGIKAIEAFKTFAPNIVVLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG ++ R ++ ++ ++ ++ + KPF ++LV V +L
Sbjct: 61 ADGWQVCREIRQV-SNIPIIMLSAKGETFDKVLGLELGADDYIVKPFESKELVARVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|290958330|ref|YP_003489512.1| two component response regulator [Streptomyces scabiei 87.22]
gi|260647856|emb|CBG70961.1| putative two component response regulator [Streptomyces scabiei
87.22]
Length = 246
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +LLAEDD +R L +AL GYEV + +G A + +L+ D++MP +D
Sbjct: 1 MPQNVLLAEDDRAIRHALERALTLEGYEVTAVADGVEALAQAHRTRPDVLVLDVMMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T A + KPF + ++ + LL
Sbjct: 61 GLQVCRVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 120
>gi|229080343|ref|ZP_04212868.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228703012|gb|EEL55473.1| Two-component response regulator [Bacillus cereus Rock4-2]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAMDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWTVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|224370278|ref|YP_002604442.1| two-component response regulator [Desulfobacterium autotrophicum
HRM2]
gi|223692995|gb|ACN16278.1| two-component response regulator [Desulfobacterium autotrophicum
HRM2]
Length = 244
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ ED+ + + L GY V +G + + R+ L++ DI++P +DG
Sbjct: 6 KKRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLPMIDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ D L V+ ++ L+KPF L + + V+RLL K
Sbjct: 66 LTVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKPFDLDEFLLRVDRLLARK 125
Query: 122 N 122
+
Sbjct: 126 S 126
>gi|221636014|ref|YP_002523890.1| response regulator [Thermomicrobium roseum DSM 5159]
gi|221157462|gb|ACM06580.1| response regulator [Thermomicrobium roseum DSM 5159]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + L + L G+ V +G A V E L++ D ++P MDG+
Sbjct: 3 HVLVVDDDTRLVEMLRRTLSYEGFTVSVAQSGDEALRLVAERRPDLIVLDWLLPGMDGLA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ +T AV L KPF +L+ + LL
Sbjct: 63 VVQRLRAAGDGTPILMLTARDAVEDRVLGLDSGADDYLVKPFAPAELLARIRALLRR 119
>gi|189426125|ref|YP_001953302.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
gi|189422384|gb|ACD96782.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
Length = 454
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 62/118 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD +RR L L +AGYEV + +G + + L+++D+ MP MD
Sbjct: 1 MHPTILIIDDDASLRRVLEYQLQEAGYEVATAASGEEGLARFSDLAPQLVISDMQMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ + E P+ V+ IT F +V + + ++KPF+ +L V R L
Sbjct: 61 GMQVLKTVKERSPETPVIIITAFGSVDVAVQAMKQGAYDYITKPFNRDELHLTVARAL 118
>gi|126699731|ref|YP_001088628.1| two-component system response regulator [Clostridium difficile 630]
gi|254975704|ref|ZP_05272176.1| two-component system response regulator [Clostridium difficile
QCD-66c26]
gi|255093090|ref|ZP_05322568.1| two-component system response regulator [Clostridium difficile CIP
107932]
gi|255101245|ref|ZP_05330222.1| two-component system response regulator [Clostridium difficile
QCD-63q42]
gi|255307120|ref|ZP_05351291.1| two-component system response regulator [Clostridium difficile ATCC
43255]
gi|255314833|ref|ZP_05356416.1| two-component system response regulator [Clostridium difficile
QCD-76w55]
gi|255517507|ref|ZP_05385183.1| two-component system response regulator [Clostridium difficile
QCD-97b34]
gi|255650618|ref|ZP_05397520.1| two-component system response regulator [Clostridium difficile
QCD-37x79]
gi|255656088|ref|ZP_05401497.1| two-component system response regulator [Clostridium difficile
QCD-23m63]
gi|260683714|ref|YP_003214999.1| two-component system response regulator [Clostridium difficile
CD196]
gi|260687374|ref|YP_003218508.1| two-component system response regulator [Clostridium difficile
R20291]
gi|296450481|ref|ZP_06892237.1| response regulator [Clostridium difficile NAP08]
gi|296879395|ref|ZP_06903389.1| response regulator [Clostridium difficile NAP07]
gi|115251168|emb|CAJ68999.1| Two-component response regulator [Clostridium difficile]
gi|260209877|emb|CBA63796.1| two-component system response regulator [Clostridium difficile
CD196]
gi|260213391|emb|CBE05019.1| two-component system response regulator [Clostridium difficile
R20291]
gi|296260742|gb|EFH07581.1| response regulator [Clostridium difficile NAP08]
gi|296429541|gb|EFH15394.1| response regulator [Clostridium difficile NAP07]
Length = 222
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L GY+V + N+G K ++ + L++ DI+MP +D
Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++F+T + ++KPF L+ V +L
Sbjct: 61 GYGVCKMIRK-SSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|75910288|ref|YP_324584.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75704013|gb|ABA23689.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD+ + L +AL Y + +G +D + + L+L D+++P+++GIEL
Sbjct: 4 LLVEDDERIAASLTEALTDNNYAIDVAGDGEEGWDFITAFDYDLILLDVMLPKLNGIELC 63
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R + L V+ +T + + KPF L++L+ + LL N
Sbjct: 64 QRLRQRGYGLPVLMLTARDSSTDKVLGLDAGADDYVIKPFDLKELLARIRALLRRGN 120
>gi|15600553|ref|NP_254047.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
gi|116053507|ref|YP_793834.1| two-component response regulator PhoB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152987707|ref|YP_001351454.1| two-component response regulator PhoB [Pseudomonas aeruginosa PA7]
gi|218894463|ref|YP_002443333.1| two-component response regulator PhoB [Pseudomonas aeruginosa
LESB58]
gi|254237949|ref|ZP_04931272.1| two-component response regulator PhoB [Pseudomonas aeruginosa
C3719]
gi|254243755|ref|ZP_04937077.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
gi|296392220|ref|ZP_06881695.1| two-component response regulator PhoB [Pseudomonas aeruginosa PAb1]
gi|313106787|ref|ZP_07793002.1| two-component response regulator PhoB [Pseudomonas aeruginosa
39016]
gi|12230950|sp|P23620|PHOB_PSEAE RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|9951681|gb|AAG08745.1|AE004948_1 two-component response regulator PhoB [Pseudomonas aeruginosa PAO1]
gi|115588728|gb|ABJ14743.1| two-component response regulator PhoB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169880|gb|EAZ55391.1| two-component response regulator PhoB [Pseudomonas aeruginosa
C3719]
gi|126197133|gb|EAZ61196.1| two-component response regulator PhoB [Pseudomonas aeruginosa 2192]
gi|150962865|gb|ABR84890.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas aeruginosa PA7]
gi|218774692|emb|CAW30509.1| two-component response regulator PhoB [Pseudomonas aeruginosa
LESB58]
gi|310879504|gb|EFQ38098.1| two-component response regulator PhoB [Pseudomonas aeruginosa
39016]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P GI
Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|157363824|ref|YP_001470591.1| two component transcriptional regulator [Thermotoga lettingae TMO]
gi|157314428|gb|ABV33527.1| two component transcriptional regulator, winged helix family
[Thermotoga lettingae TMO]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 61/121 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ ED++D+ + + L K GY+V + A+D V E+ + L+ D+++P ++G
Sbjct: 5 KEKVLIVEDNEDLLNSIKEFLLKEGYDVSCAVDAEQAFDMVIEDHYDCLVVDVLLPGING 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E E ++ ++ +T A+ + L+KPF R+L+ + L+
Sbjct: 65 FEFVEHLRESLINVPILILTALDAINDKVRGLSCGADDYLTKPFDFRELLARIKSLIRRS 124
Query: 122 N 122
N
Sbjct: 125 N 125
>gi|300868611|ref|ZP_07113225.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
gi|300333370|emb|CBN58417.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
Length = 245
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L AGYEV +G + L++ D+++P +D
Sbjct: 1 MMPRILVIDDDPTIAELVAVNLEMAGYEVTQAEDGIKGQALAIQMLPDLIMLDLMLPRVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R D+ V+ +T + L+KPF L +++ V LL
Sbjct: 61 GFTVCQRLRRDDRTADIPVLMLTALGQTQDKVEGFNSGADDYLTKPFELEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|269217323|ref|ZP_06161177.1| regulatory protein VanR [Slackia exigua ATCC 700122]
gi|269129460|gb|EEZ60545.1| regulatory protein VanR [Slackia exigua ATCC 700122]
Length = 238
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+DD D+ + L GY V + +G A R PF L + D++MP+ G+E
Sbjct: 12 RILLADDDPDILEVVSVLLASEGYRVDAARDGLEALALAR-HPFDLAILDVMMPKASGLE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R L + ++F+T + A A L KPF +L+ V +L
Sbjct: 71 VCERLR-LSSNAPILFLTARSQDADKVAGLAAGGDDYLVKPFSTPELLARVKAMLRR 126
>gi|212637546|ref|YP_002314071.1| osmolarity response regulator [Shewanella piezotolerans WP3]
gi|212559030|gb|ACJ31484.1| Response regulator receiver:Transcriptional regulatory protein
[Shewanella piezotolerans WP3]
Length = 241
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQVGNPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|91777087|ref|YP_546843.1| two component transcriptional regulator [Methylobacillus
flagellatus KT]
gi|91711074|gb|ABE51002.1| two component transcriptional regulator, winged helix family
[Methylobacillus flagellatus KT]
Length = 241
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L L AG+ V NG + V +EP +L++ D+++P DG+
Sbjct: 6 HILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI-KN 122
L R DL ++ +T + L KPF R+L+ + +L +N
Sbjct: 66 LCREVRAQG-DLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124
>gi|238755122|ref|ZP_04616469.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
ruckeri ATCC 29473]
gi|238706682|gb|EEP99052.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
ruckeri ATCC 29473]
Length = 234
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 6 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 65
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++LV + ++
Sbjct: 66 GIQFIKHMKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 125
Query: 119 TI 120
Sbjct: 126 RR 127
>gi|188589285|ref|YP_001922199.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
gi|188499566|gb|ACD52702.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
Length = 236
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +L+ +D+ ++R + L GY V NG A + +RE+ L++ D++MP+++G
Sbjct: 4 NKTVLIVDDEKEIRDLVEIYLKSEGYLTVKACNGEEALNMIREQNVDLVILDVMMPKLNG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I+ + E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 64 IDTCLKIREER-EMPIIMLSAKSEDIDKILGLNMGADDYITKPFNPLELVARVKSQLRR 121
>gi|156972943|ref|YP_001443850.1| osmolarity response regulator [Vibrio harveyi ATCC BAA-1116]
gi|156524537|gb|ABU69623.1| hypothetical protein VIBHAR_00621 [Vibrio harveyi ATCC BAA-1116]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRHANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|189424753|ref|YP_001951930.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
gi|189421012|gb|ACD95410.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
Length = 472
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 71/119 (59%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ +R + + L ++V + NG +A +++++EPF L++TD+ MP + G+
Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + E+ PDL V+FITG+++V + ++KPF ++++ + L +
Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQR 123
>gi|117928802|ref|YP_873353.1| two component transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117649265|gb|ABK53367.1| two component transcriptional regulator, winged helix family
[Acidothermus cellulolyticus 11B]
Length = 227
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L ++L GY+V ++G A + +++ D++MP +DG+E
Sbjct: 2 RVLVVDDDPAVRESLRRSLVFNGYDVELADDGQRALAMINMRRPDVVILDVLMPGLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ V+ +T AV+ L KPF L +L+ + L+
Sbjct: 62 TCRRLRAAGDDVPVLMLTAREAVSDRVAGLDAGADDYLVKPFALEELLARLRALVRR 118
>gi|42780675|ref|NP_977922.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
gi|65318844|ref|ZP_00391803.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|118477032|ref|YP_894183.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|170689223|ref|ZP_02880419.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
gi|196036824|ref|ZP_03104213.1| DNA-binding response regulator ResD [Bacillus cereus W]
gi|217959052|ref|YP_002337600.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
gi|218902686|ref|YP_002450520.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
gi|229138269|ref|ZP_04266864.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
gi|229155143|ref|ZP_04283255.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
gi|229602173|ref|YP_002865982.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
gi|254682360|ref|ZP_05146221.1| DNA-binding response regulator ResD [Bacillus anthracis str.
CNEVA-9066]
gi|254721256|ref|ZP_05183046.1| DNA-binding response regulator ResD [Bacillus anthracis str. A1055]
gi|254733775|ref|ZP_05191489.1| DNA-binding response regulator ResD [Bacillus anthracis str.
Western North America USA6153]
gi|254740534|ref|ZP_05198225.1| DNA-binding response regulator ResD [Bacillus anthracis str. Kruger
B]
gi|254753923|ref|ZP_05205958.1| DNA-binding response regulator ResD [Bacillus anthracis str.
Vollum]
gi|254759019|ref|ZP_05211046.1| DNA-binding response regulator ResD [Bacillus anthracis str.
Australia 94]
gi|300117496|ref|ZP_07055286.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
gi|42736595|gb|AAS40530.1| DNA-binding response regulator ResD [Bacillus cereus ATCC 10987]
gi|118416257|gb|ABK84676.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|170666778|gb|EDT17545.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0465]
gi|195990553|gb|EDX54532.1| DNA-binding response regulator ResD [Bacillus cereus W]
gi|217068293|gb|ACJ82543.1| DNA-binding response regulator ResD [Bacillus cereus AH187]
gi|218535347|gb|ACK87745.1| DNA-binding response regulator ResD [Bacillus cereus AH820]
gi|228628270|gb|EEK84985.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC 4342]
gi|228645161|gb|EEL01398.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST26]
gi|229266581|gb|ACQ48218.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0248]
gi|298725331|gb|EFI65983.1| DNA-binding response regulator ResD [Bacillus cereus SJ1]
gi|324325592|gb|ADY20852.1| DNA-binding response regulator ResD [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 250
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 18 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 78 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 133
>gi|291616506|ref|YP_003519248.1| PhoB [Pantoea ananatis LMG 20103]
gi|291151536|gb|ADD76120.1| PhoB [Pantoea ananatis LMG 20103]
Length = 245
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA K+ E L+L D ++P
Sbjct: 17 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAISKLIEPWPDLILLDWMLPGGS 76
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++L+ + ++
Sbjct: 77 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136
Query: 119 TI 120
Sbjct: 137 RR 138
>gi|283783193|ref|YP_003373947.1| response regulator receiver domain protein [Gardnerella vaginalis
409-05]
gi|298253961|ref|ZP_06977548.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis 5-1]
gi|283441704|gb|ADB14170.1| response regulator receiver domain protein [Gardnerella vaginalis
409-05]
gi|297532104|gb|EFH71079.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis 5-1]
Length = 246
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MNQK----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + +L++ D+++
Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|262282637|ref|ZP_06060405.1| response regulator [Streptococcus sp. 2_1_36FAA]
gi|262261928|gb|EEY80626.1| response regulator [Streptococcus sp. 2_1_36FAA]
Length = 233
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ +G A + E +L+ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V +L
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118
>gi|159899908|ref|YP_001546155.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892947|gb|ABX06027.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 227
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R + AL +AGY VV +G A + E L++ D+ MP +DG E
Sbjct: 2 KILVVDDDAELRGLIGFALSQAGYAVVQAADGTQALTQFAAEQPELVILDVNMPGLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + VM +T + L+KPF R L V LL
Sbjct: 62 VCRRIRAQSI-VPVMLLTVRNSEDDLIRGLDGGADDYLNKPFSPRTLTARVRALLRR 117
>gi|326789171|ref|YP_004306992.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326539935|gb|ADZ81794.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY V G A V E L++ D++MP ++GI
Sbjct: 4 ETILIVDDEKEIRDLIEIYLKNEGYIVEKAGTGLEALQLVEERQIDLIILDVMMPVVNGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + ++ ++ + L+KPF+ +L+ V L
Sbjct: 64 DACIKIREQY-NTPIIMLSAKVEDIDKILGLSVGADDYLAKPFNPLELIARVKAQLRR 120
>gi|291302594|ref|YP_003513872.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290571814|gb|ADD44779.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 236
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++ L +LG AG+ V G A V L++ D+++P+ DG E
Sbjct: 13 TLLVVEDDPNICELLATSLGYAGFTVHRAEGGEEAVRAVARHRPDLVVLDVMLPDFDGFE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR ++++T A+ ++KPF L +++ + +L
Sbjct: 73 VARRIRSGSDRTPIVYLTARDALEDKVRGLTLGGDDYVTKPFSLEEVIARIRAVLRR 129
>gi|42781109|ref|NP_978356.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42737030|gb|AAS40964.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|323494579|ref|ZP_08099683.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
gi|323311182|gb|EGA64342.1| osmolarity response regulator [Vibrio brasiliensis LMG 20546]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNTLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|293392590|ref|ZP_06636910.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
gi|291424992|gb|EFE98201.1| phosphate regulon response regulator [Serratia odorifera DSM 4582]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|241554112|ref|YP_002979325.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240863418|gb|ACS61080.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 234
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + AL +AG ++ NG A R L++ DI MPEMD
Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLAWMAARNGTEAMAAFRRGNIDLIILDIGMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + L ++F++ ++KPF R+LV V +L
Sbjct: 61 GLEVCRQIRK-TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVKAILKR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|330505652|ref|YP_004382521.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328919938|gb|AEB60769.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P GI
Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|327392936|dbj|BAK10358.1| phosphate regulon transcriptional regulatory protein PhoB [Pantoea
ananatis AJ13355]
Length = 245
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA K+ E L+L D ++P
Sbjct: 17 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVSKLIEPWPDLILLDWMLPGGS 76
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++L+ + ++
Sbjct: 77 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 136
Query: 119 TI 120
Sbjct: 137 RR 138
>gi|302544103|ref|ZP_07296445.1| DNA-binding response regulator TrcR [Streptomyces hygroscopicus
ATCC 53653]
gi|302461721|gb|EFL24814.1| DNA-binding response regulator TrcR [Streptomyces himastatinicus
ATCC 53653]
Length = 290
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + +GA A RE ++ D+++P+MDG+
Sbjct: 66 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRTTRELRPDAVVLDVMLPDMDGLT 125
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 126 VLGRLRRELPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRR 182
>gi|225869229|ref|YP_002745177.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
gi|225702505|emb|CAX00433.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L++TD++MP MD
Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIITDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + PD +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120
>gi|119512472|ref|ZP_01631553.1| two-component system response regulator [Nodularia spumigena
CCY9414]
gi|119462876|gb|EAW43832.1| two-component system response regulator [Nodularia spumigena
CCY9414]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L + GY V +GA+ + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYSVDMAYDGATGSEFAAGGTYDLLILDWMLPGKTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+F+T + + L KPF LR+L+ V LL
Sbjct: 62 ICQELRRQGKATPVLFLTAKDTLDDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|221134917|ref|ZP_03561220.1| putative DNA-binding response regulator PhoB [Glaciecola sp.
HTCC2999]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL ED+ +R + L +AG+ V + A DK+ E L+L D ++P
Sbjct: 1 MSRSILLVEDEAPIREMIKIILEQAGFTVNEAEDFDIALDKMVEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LAR+ E ++ V+ +T ++KPF ++LV + ++
Sbjct: 61 GVQLARKFKEHEFTREIPVILLTARGEEDDKIRGLDAGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|54022513|ref|YP_116755.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
gi|54014021|dbj|BAD55391.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L +L G+EV + +GA A DK R ++ D++MP +DG
Sbjct: 13 RVLVVDDEPMIVELLSVSLRFQGFEVETAVDGAQALDKARSFRPQAMIVDVMMPGIDGFG 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D V+F+T V ++KPF L ++V + +L
Sbjct: 73 LLPRLRADGIDAPVLFLTARDDVQDKVAGLTLGADDYITKPFSLEEVVARLRVVLRR 129
>gi|87123222|ref|ZP_01079073.1| two-component response regulator [Synechococcus sp. RS9917]
gi|86168942|gb|EAQ70198.1| two-component response regulator [Synechococcus sp. RS9917]
Length = 256
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ +RR L+ L AGY+V+ +G A + + L++ D+++P++DG
Sbjct: 11 KATILVVDDEPAVRRVLVMRLQLAGYQVICAEDGEKALELFHRDSPDLVVLDVMLPKLDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 71 FAVCRRLRAE-SCVPIIFLSALEAISERVAGLDLGADDYLPKPFSPKELEARIASILRR 128
>gi|123444180|ref|YP_001008150.1| osmolarity response regulator [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|157372853|ref|YP_001480842.1| osmolarity response regulator [Serratia proteamaculans 568]
gi|238751147|ref|ZP_04612642.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
43380]
gi|238788973|ref|ZP_04632763.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
ATCC 33641]
gi|238792875|ref|ZP_04636505.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
29909]
gi|238797301|ref|ZP_04640802.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
43969]
gi|270264440|ref|ZP_06192706.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|293393393|ref|ZP_06637705.1| response regulator OmpR [Serratia odorifera DSM 4582]
gi|332163326|ref|YP_004299903.1| osmolarity response regulator [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|122091141|emb|CAL14024.1| transcriptional regulatory protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|157324617|gb|ABV43714.1| two component transcriptional regulator, winged helix family
[Serratia proteamaculans 568]
gi|238710625|gb|EEQ02848.1| Transcriptional regulatory protein ompR [Yersinia rohdei ATCC
43380]
gi|238718938|gb|EEQ10753.1| Transcriptional regulatory protein ompR [Yersinia mollaretii ATCC
43969]
gi|238723000|gb|EEQ14650.1| Transcriptional regulatory protein ompR [Yersinia frederiksenii
ATCC 33641]
gi|238727729|gb|EEQ19253.1| Transcriptional regulatory protein ompR [Yersinia intermedia ATCC
29909]
gi|270041576|gb|EFA14674.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|291424130|gb|EFE97347.1| response regulator OmpR [Serratia odorifera DSM 4582]
gi|318607817|emb|CBY29315.1| two-component system response regulator OmpR [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667556|gb|ADZ44200.1| osmolarity response regulator [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862979|emb|CBX73112.1| transcriptional regulatory protein ompR [Yersinia enterocolitica
W22703]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|304309784|ref|YP_003809382.1| Two-component transcriptional regulatory protein [gamma
proteobacterium HdN1]
gi|301795517|emb|CBL43715.1| Two-component transcriptional regulatory protein [gamma
proteobacterium HdN1]
Length = 246
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L + L + GY V + + + E ++L++ D+++P DG+
Sbjct: 13 RILVVDDDARLRSLLQRYLEEQGYAVKAVADAPQMDKALSRELYNLMVLDLMLPGEDGLS 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E + ++ +T + L KPF+ R+L+ + +L +
Sbjct: 73 ICRRLREATNRIPIIMLTAKGDDNDRINGLDAGADDYLPKPFNPRELMARIKAVLRRQ 130
>gi|229059658|ref|ZP_04197036.1| DNA-binding response regulator [Bacillus cereus AH603]
gi|229166864|ref|ZP_04294611.1| DNA-binding response regulator [Bacillus cereus AH621]
gi|228616492|gb|EEK73570.1| DNA-binding response regulator [Bacillus cereus AH621]
gi|228719671|gb|EEL71270.1| DNA-binding response regulator [Bacillus cereus AH603]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E + + DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVDMAILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDLCYELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119
>gi|157151157|ref|YP_001450078.1| response regulator [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075951|gb|ABV10634.1| response regulator [Streptococcus gordonii str. Challis substr.
CH1]
Length = 233
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ +G A + E +L+ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAENPDILILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V +L
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKAILRR 118
>gi|158319979|ref|YP_001512486.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140178|gb|ABW18490.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 227
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ ED+ + RFL L GY+V ++G K + EPF L++ DI++P ++G
Sbjct: 3 KKKILIVEDEIKIARFLELELTHEGYDVEQAHDGREGVQKAQNEPFDLIILDIMLPHING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R+ + + ++ +T V ++KPF + +L+ + L
Sbjct: 63 IEVLRKIRQ-TSTIPIIMLTAKDEVMDKVIGLDMGANDYMTKPFAIEELLARIRAALK 119
>gi|213498008|emb|CAR92187.1| PhoB protein [Serratia sp. ATCC 39006]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAINQLTEPYPELVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHMKRETLTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|324326021|gb|ADY21281.1| response regulator [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MLPKILIVDDDPHIRELVSIFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|300868441|ref|ZP_07113062.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300333575|emb|CBN58250.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 382
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D D + L GYE+ S NG SA ++ + P L+L D++MP MDG E
Sbjct: 14 RILVVDDAPDNVLLVQTILEDEGYEISSAENGFSALAQIEQSPPDLVLLDVMMPGMDGYE 73
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E P + ++ IT + + KP + +L+ V LL +K
Sbjct: 74 VTQRIRQNEKLPFIPILLITAHDQPS-VVQGLDTGADDFIRKPVEMDELLARVRSLLRLK 132
Query: 122 N 122
+
Sbjct: 133 H 133
>gi|291568591|dbj|BAI90863.1| two-component system response regulator (OmpR subfamily)
[Arthrospira platensis NIES-39]
Length = 227
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L +AL + GY V G A + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++F+T + L KPF LR+L+ V LL
Sbjct: 62 ICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|229165596|ref|ZP_04293370.1| Two-component response regulator [Bacillus cereus AH621]
gi|228617879|gb|EEK74930.1| Two-component response regulator [Bacillus cereus AH621]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVYAVSGEEAISHIENRNFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVVQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|119510886|ref|ZP_01630010.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
gi|119464495|gb|EAW45408.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
Length = 250
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
+IL+ ED++ ++ L AL + G+ V++ +G SA + ++ E PF L++ D+++
Sbjct: 20 RILVVEDEELIQEMLAVALEEEGFGVITAPDGRSAVEYLKSCEPNSGEPPFDLIILDLML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P ++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 80 PHINGLDICRLLRHQGNPVPILILSAKGSETDRVLGLEVGADDYLTKPFSMRELVARCRA 139
Query: 117 LLTIK 121
LL +
Sbjct: 140 LLRRQ 144
>gi|154503469|ref|ZP_02040529.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
gi|153795569|gb|EDN77989.1| hypothetical protein RUMGNA_01293 [Ruminococcus gnavus ATCC 29149]
Length = 233
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ +NG A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLMKECFDTKIVSNGEDALSAFETYQPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF +++V V +L
Sbjct: 64 YQVCRELRAK-SQVPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKEMVARVRAVLRR 121
>gi|153868898|ref|ZP_01998627.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152074527|gb|EDN71372.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 378
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D D R LI L + GY+V NG A R P L+L DI+MPEM
Sbjct: 1 MKPETILVVDDLADNLRVLIGILSQQGYKVRPARNGQQALLMARTSPPDLILLDIMMPEM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ ++ + + ++FI+ V + + ++KPF +++ V
Sbjct: 61 DGYEVCQQLKADQKTHHIPIIFISALNEVLDKIKAFSLGAVDYITKPFQAEEVLARVETH 120
Query: 118 LTI 120
L +
Sbjct: 121 LKL 123
>gi|325681015|ref|ZP_08160547.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
gi|324107244|gb|EGC01528.1| transcriptional regulatory protein ResD [Ruminococcus albus 8]
Length = 233
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD ++ L L K GY V+ ++G A K ++L DI++P +DG +
Sbjct: 5 RVLVVDDDKNICELLRLYLEKDGYGVILAHDGEEAVVKFNALKPDIILLDIMLPGIDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + KPF ++++ + +
Sbjct: 65 VCREIRKK-SNVPIIMITAKVETFDKVLGLELGADDYIVKPFDTKEVIARIKAVYRR 120
>gi|33864662|ref|NP_896221.1| two-component response regulator [Synechococcus sp. WH 8102]
gi|33632185|emb|CAE06641.1| two-component response regulator [Synechococcus sp. WH 8102]
Length = 253
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L +GY VV +G A + E L++ D+++P++DG
Sbjct: 10 KATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLVVLDVMLPKLDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L ++ +L
Sbjct: 70 FAVCRRLRAE-SCVPIIFLSAVDAISEKVAGLDLGADDYLPKPFSPKELEARISTILRR 127
>gi|11465394|ref|NP_045215.1| Ycf27 [Cyanidium caldarium]
gi|14548002|sp|Q9TLQ4|YCF27_CYACA RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|6466297|gb|AAF12879.1|AF022186_1 unknown [Cyanidium caldarium]
Length = 249
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ +D++++R+ L L GY V + NG A L++ D++MP++DG
Sbjct: 12 HHLLIVDDENNIRKILQTRLTLLGYSVSTACNGEEALKIFTTHSIDLIILDVMMPKLDGY 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T V + KPF R+L + +L
Sbjct: 72 GVCQEIRKE-SDIPIIMLTALEDVLDKVTGLELGADDYVIKPFSPRELEARIQSILRR 128
>gi|186683796|ref|YP_001866992.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186466248|gb|ACC82049.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 247
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ V+ +T + + L+KPF + +L+ V LL
Sbjct: 63 VCQRLRRDDRTSEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEELLARVRALLRR 121
>gi|223984503|ref|ZP_03634635.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
12042]
gi|223963489|gb|EEF67869.1| hypothetical protein HOLDEFILI_01930 [Holdemania filiformis DSM
12042]
Length = 224
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + K G+ V +G A DK +E + L++ DI+MP +DG
Sbjct: 3 KILVVDDEQRIREMIRKYAEYEGFAVDEACDGLEAVDKAMKENYDLIVMDIMMPNLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ V+ ++ + KPF ++L+ ++ +L
Sbjct: 63 ACREIRKTHENVPVILLSALGEEYDKIHGFDLGVDDYVVKPFSPKELMMRIHAILKR 119
>gi|218779424|ref|YP_002430742.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
gi|218760808|gb|ACL03274.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
Length = 236
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I++ +DD +R + AL K G++ + +G A + E L++ DI+MPE
Sbjct: 1 MAKAPTIMVVDDDAHIREVVGFALKKEGFQTIPAKDGLQAVEMFAEATPDLVILDILMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ ++ D+ ++F++ ++KPF R+L+ V L
Sbjct: 61 MDGTEVCKKIRA-HSDVPIIFLSSKDDEIDRILGLELGGDDYVTKPFSPRELIARVKARL 119
Query: 119 TIK 121
+
Sbjct: 120 RRR 122
>gi|326389588|ref|ZP_08211154.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|325994303|gb|EGD52729.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D++ + L +L + G+EV + +G DKVR + L++ DI++P++DG
Sbjct: 2 EKLLIIDDEEMFVKGLKLSLEEEGFEVDTAYDGEKGLDKVRLGNYDLVILDIMLPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T L+KPF+ R+L+ + LL
Sbjct: 62 SVCREIR-TFSNIPIIMLTARGDDIDKIVGIEIGADDYLAKPFNTRELIARIRALLRR 118
>gi|320355415|ref|YP_004196754.1| winged helix family two component transcriptional regulator
[Desulfobulbus propionicus DSM 2032]
gi|320123917|gb|ADW19463.1| two component transcriptional regulator, winged helix family
[Desulfobulbus propionicus DSM 2032]
Length = 231
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+++ + L KAG+ V ++G A + EP ++ D+++P DG E+
Sbjct: 6 ILVVEDDADIQQLVSYNLIKAGFNVTCADSGEEALQLLAREPIDAMVLDLMLPGKDGNEV 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L ++ +T + ++KPF R L+ + L
Sbjct: 66 CRAVRGQEAIKGLPIIMLTAKSEEDDIVSGLECGADDYVTKPFSPRVLIARLEAALRR 123
>gi|302876607|ref|YP_003845240.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307687281|ref|ZP_07629727.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302579464|gb|ADL53476.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 224
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + L +GYE A D+V+ L+L DI+MPE D
Sbjct: 1 MS-KILIVDDDLNICEVIKMYLENSGYETSLAYCAQEAQDQVKGFKPDLILLDIIMPETD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + V+ +T + + KPF ++L+ V +L
Sbjct: 60 GYEILKWIRREH-QTPVIMLTAKSDTFDKVLGLELGADDYIVKPFDPKELIARVKAVLRR 118
>gi|229060772|ref|ZP_04198127.1| Two-component response regulator [Bacillus cereus AH603]
gi|228718419|gb|EEL70051.1| Two-component response regulator [Bacillus cereus AH603]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFEMGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|227494381|ref|ZP_03924697.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
gi|226832115|gb|EEH64498.1| response regulator PhoP [Actinomyces coleocanis DSM 15436]
Length = 252
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L AG+EV++ +GASA+ E L++ D+++P+MDG
Sbjct: 29 RLLVVDDEPNIRDLLASSLRFAGFEVITAADGASAFHLATTENPDLIVLDVMLPDMDGFT 88
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T + ++KPF L ++V + +L
Sbjct: 89 VTRRLRNAGTRIPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 145
>gi|218439203|ref|YP_002377532.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218171931|gb|ACK70664.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 224
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + +F+ L GY+V +G S RE L+L D ++P +
Sbjct: 1 MAAHILVVEDEGKLAQFIELELKYEGYQVTVAPDGLSGLTTARESNPDLILLDWMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + + ++ +T ++ + KPF L +L+ V L
Sbjct: 61 GLEICKRLRQTGNKVPIILLTAKDEISDRVTGLDAGADDYIIKPFSLEELLARVRANLRR 120
>gi|89094516|ref|ZP_01167455.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
gi|89081252|gb|EAR60485.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
Length = 230
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AEDD ++R L L GYE + +NG AY L+L DI+MP MDG
Sbjct: 2 KVLIAEDDLNIRLGLSDLLEDEGYECLQASNGDEAYSLFAMHQPDLVLLDIMMPGMDGYA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ +L+ + V+FIT + + KPF R+++ +N ++
Sbjct: 62 VCRKIRQLNEQVPVIFITAKSEEIDQVLGLELGADDYIKKPFGTREVIARINAVIRR 118
>gi|315612077|ref|ZP_07886994.1| response regulator [Streptococcus sanguinis ATCC 49296]
gi|315315879|gb|EFU63914.1| response regulator [Streptococcus sanguinis ATCC 49296]
Length = 232
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLIQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|146309422|ref|YP_001189887.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
gi|145577623|gb|ABP87155.1| two component transcriptional regulator, winged helix family
[Pseudomonas mendocina ymp]
Length = 229
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P GI
Sbjct: 4 KNILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTSDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|154247331|ref|YP_001418289.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154161416|gb|ABS68632.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 236
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++RR K L + G++V + + + ++ P L++ DI++P G++
Sbjct: 6 HILIVDDDAEIRRLAGKFLREHGHKVTTAQDAREMREAMKAGPVDLIILDIMLPGASGLD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T + LSKPF+ R+L+ ++ +L
Sbjct: 66 LCRDIR-RTSSVPIIMLTARGSDVDRIVGLELGADDYLSKPFNPRELLARIHAVLRR 121
>gi|126659727|ref|ZP_01730855.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
gi|126618975|gb|EAZ89716.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
Length = 224
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L +L + Y V +G ++ + + L+L D+++P+++GI
Sbjct: 2 RILLVEDDERIANVLAASLTEQRYTVDMAGDGEKGWEFIEAFSYDLILLDVMLPKLNGIG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + + V+ +T + KPF + +L+ + LL N
Sbjct: 62 LCQRIRQSGCSIPVLMLTAKDTSEDKVTGLDVGADDYVVKPFDVPELLARIRALLRRGN 120
>gi|46908673|ref|YP_015062.1| DNA-binding response regulator PhoP [Listeria monocytogenes
serotype 4b str. F2365]
gi|47092787|ref|ZP_00230572.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
H7858]
gi|290892664|ref|ZP_06555656.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J2-071]
gi|293596309|ref|ZP_05230378.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J1-194]
gi|293596921|ref|ZP_05265617.2| DNA-binding response regulator PhoP [Listeria monocytogenes
HPB2262]
gi|46881945|gb|AAT05239.1| DNA-binding response regulator PhoP [Listeria monocytogenes
serotype 4b str. F2365]
gi|47018875|gb|EAL09623.1| DNA-binding response regulator PhoP [Listeria monocytogenes str. 4b
H7858]
gi|290557724|gb|EFD91246.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J2-071]
gi|293583815|gb|EFF95847.1| DNA-binding response regulator PhoP [Listeria monocytogenes
HPB2262]
gi|293594620|gb|EFG02381.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J1-194]
Length = 240
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|332828802|gb|EGK01494.1| hypothetical protein HMPREF9455_02327 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1473
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ EDD D+RRF++ L Y V+ +G YDK +++DI+MPEMDG
Sbjct: 1213 KETILVVEDDSDLRRFIVNILEPY-YNVLDAADGKEGYDKAVANVPDFIVSDIMMPEMDG 1271
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ + V+ +T + DS ++KPF ++ L + ++
Sbjct: 1272 TELLQKIRSTTEISHIPVILLTAKTDMESKLDSLDYGADDYITKPFSVKYLRARIENIIR 1331
Query: 120 IK 121
+
Sbjct: 1332 QR 1333
>gi|329929475|ref|ZP_08283209.1| response regulator MprA [Paenibacillus sp. HGF5]
gi|328936363|gb|EGG32810.1| response regulator MprA [Paenibacillus sp. HGF5]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++LL +D+ + +FL L G+EV + ++G A + +++ D++MP M
Sbjct: 4 MHRIRVLLVDDEPHILQFLELGLHNEGFEVRTASDGECALREAASFEPHVIVLDVMMPGM 63
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + RR E D+ V+ +T + ++KPF +L+ + L
Sbjct: 64 DGLAVCRRLKEEGRDIAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123
Query: 120 IK 121
+
Sbjct: 124 NQ 125
>gi|291295489|ref|YP_003506887.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
gi|290470448|gb|ADD27867.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
Length = 227
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY +G + + RE +L++ D+++P MDG+E+
Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVMDLMLPVMDGLEV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ ++ +T V + L KPF + +L+ + L
Sbjct: 69 ARRIRK-TSNVPIVILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123
>gi|225017711|ref|ZP_03706903.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
DSM 5476]
gi|224949504|gb|EEG30713.1| hypothetical protein CLOSTMETH_01640 [Clostridium methylpentosum
DSM 5476]
Length = 232
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L YE+ + A + E+P L + D++MP MD
Sbjct: 1 MKTKILVVDDEKEIADLVELYLKNENYEIYKFYDPLQALACIEEQPVDLAILDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + V+ +T ++KPFH ++V V L
Sbjct: 61 GFALCAKIRDKY-TFPVLMLTAKVEDIDKITGLTIGADDYITKPFHPLEMVARVKAQLRR 119
>gi|219848013|ref|YP_002462446.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219542272|gb|ACL24010.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 236
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + L L + GY V+ +G D+ R + L++ DI++P +DG
Sbjct: 3 TVLIVEDETTLAETLRYNLEREGYAVIIAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ ++ +T +SKPF L + + V +L
Sbjct: 63 VCRILRQE-SDVPIIMLTARQDEVDRIAGLELGADDYISKPFSLGEFLARVRAILRR 118
>gi|33241229|ref|NP_876171.1| two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33238759|gb|AAQ00824.1| Two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 269
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ + + L+ L AGY+VVS ++G A D E L++ D+++P++DG
Sbjct: 25 SATILVVDDEPAVLKVLVTRLELAGYKVVSASDGEEALDVFHREIPDLVVLDVMLPKLDG 84
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ LSKPF ++L + +L
Sbjct: 85 FAVCRRLRAESI-VPIIFLSALEAISERVAGLDLGADDYLSKPFSPKELEARIATILRR 142
>gi|315127978|ref|YP_004069981.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
gi|315016492|gb|ADT69830.1| osmolarity response regulator [Pseudoalteromonas sp. SM9913]
Length = 239
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+ V + + + E F L++ D+++P DG+
Sbjct: 7 KVLVVDDDKRLRSLLERYLVEQGFIVRTAADSQQMDRLIERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + + ++ +T + KPF+ R+L+ + +L ++
Sbjct: 67 ICRRLRQKENQIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRQS 125
>gi|312198931|ref|YP_004018992.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311230267|gb|ADP83122.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 257
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R+ L ++L GYEV + +G +A + + E + + D++MP MDG+E
Sbjct: 12 RVLVVDDDAAVRQSLERSLRFEGYEVATAADGLAALELISRERPDIAVLDVMMPRMDGLE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
R+ DL V+ +T +A L KPF L +L
Sbjct: 72 ACRQLRARGDDLPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 118
>gi|313115296|ref|ZP_07800772.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622380|gb|EFQ05859.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 231
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N KILL +DD D+ L+ +AGY + + +GA A +EE SL++ D++MP+MD
Sbjct: 3 NHKILLVDDDRDVLEMLLSIFRRAGYTNLRTAASGAEALRIWQEEQPSLIVLDVMMPDMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ + V+ +T + L+KPF ++L+ V +L+
Sbjct: 63 GFSVLKKIR-RTSRVPVLMLTARGEAEDRIEGLEIGADDYLAKPFLPKELLLRVGAILSR 121
>gi|308070894|ref|YP_003872499.1| regulatory protein vanR [Paenibacillus polymyxa E681]
gi|305860173|gb|ADM71961.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
Length = 226
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++R + L GY V+ +G A D ++ L++ D++MP MD
Sbjct: 1 MN-TILVVDDDSEIRDVIHVYLRNEGYHVIEAADGEEALDAIKTTSIQLVILDVMMPRMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E+ + ++ ++ + + KPF+ +L+ V L
Sbjct: 60 GIRACLKIREI-SNTPIIMLSAKEEDIDKINGLTTGADDYMIKPFNPLELLARVKAQLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|229031256|ref|ZP_04187262.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228730014|gb|EEL80988.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 225
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|229070657|ref|ZP_04203894.1| Two-component response regulator [Bacillus cereus F65185]
gi|228712479|gb|EEL64417.1| Two-component response regulator [Bacillus cereus F65185]
Length = 228
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWTVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|116329429|ref|YP_799149.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116329967|ref|YP_799685.1| response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116122173|gb|ABJ80216.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116123656|gb|ABJ74927.1| Response regulator [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
Length = 234
Score = 152 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QK+L+ +D++D+ + L + GY+V +C NG K+ + L++ D+++P + G+
Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L ++ E + ++ +T + + KPF R+L+ V +L
Sbjct: 70 DLCKKIKEKYS-MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126
>gi|238922143|ref|YP_002935657.1| two-component system, OmpR family, copper resistance phosphate
regulon response regulator CusR [Eubacterium eligens
ATCC 27750]
gi|238873815|gb|ACR73523.1| two-component system, OmpR family, copper resistance phosphate
regulon response regulator CusR [Eubacterium eligens
ATCC 27750]
Length = 223
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + R + L K Y V NG A D + E+ + ++ DI+MP MDGI
Sbjct: 2 RILLVEDDRSLSRAVSTILQKNNYSVDCVENGQMALDYLEEDIYDAVIMDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ +T + + L+KPF R+L+ + +LT
Sbjct: 62 ALKNLRKCGSNIPVLMLTAKTEIDDKVEGLDNGANDYLTKPFDTRELLARIR-VLTR 117
>gi|224541344|ref|ZP_03681883.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
15897]
gi|224525781|gb|EEF94886.1| hypothetical protein CATMIT_00504 [Catenibacterium mitsuokai DSM
15897]
Length = 223
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ +D+ +R + L KAG++ + N A D V + L + DI+MP MD
Sbjct: 1 MKSKIMVVDDEMHIRELVRFYLDKAGFDTIEAANAEEALDIVENQYIDLAVVDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + + V+ +T + + ++KPF +L+ V +L
Sbjct: 61 GFELVEQMRQ-YREFPVIMLTAKSQSKDKLRGFSLGIDDYVTKPFDPDELMARVKTILKR 119
>gi|149190144|ref|ZP_01868420.1| sensory box sensor histidine kinase/response regulator [Vibrio
shilonii AK1]
gi|148836033|gb|EDL52994.1| sensory box sensor histidine kinase/response regulator [Vibrio
shilonii AK1]
Length = 1128
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY+V +G D + E LLL DI+MP M G E+
Sbjct: 725 LVADDEPVNLRILESFLRLEGYQVKLAKDGLETLDIIEHEKPDLLLLDIMMPGMSGFEVC 784
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E L ++ +T L+KPF +L + L
Sbjct: 785 ETIREQYDHAALPIIMLTALNQSEDRVRGFELGANDYLAKPFSKPELAARIAAHL 839
>gi|75907309|ref|YP_321605.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
gi|75701034|gb|ABA20710.1| multi-sensor hybrid histidine kinase [Anabaena variabilis ATCC
29413]
Length = 1431
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILL +D+ DMR ++ + L + Y V + +G +A + + + L+LTD++MP +DG
Sbjct: 606 SARILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLDG 664
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L ++ ++ ++ A + L KPF R+L+ V L
Sbjct: 665 FGLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFSARELLARVEATLK 724
Query: 120 I 120
+
Sbjct: 725 L 725
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D R F+ L +AG V++ + A + P +LL+DI MP+MDG L
Sbjct: 1310 VLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDMDGYML 1369
Query: 65 ARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L PD + + +T +A + + +SKP +L+ + L+ I
Sbjct: 1370 MRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVNLIDI 1429
Query: 121 K 121
K
Sbjct: 1430 K 1430
>gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 242
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ILL +D+ +R + L G++V++ +G K ++ +++TD++MP+ DG
Sbjct: 14 KARILLVDDEPGIRTAVQAYLNDEGFDVLTAIDGEDGLQKAKQFMPDVVITDVMMPQCDG 73
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F+T + KPF +LV V ++
Sbjct: 74 YELLRQLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELVARVKNVVK 133
Query: 120 IK 121
+
Sbjct: 134 RQ 135
>gi|153947217|ref|YP_001402928.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
31758]
gi|238754106|ref|ZP_04615464.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
29473]
gi|238765203|ref|ZP_04626134.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
33638]
gi|238783102|ref|ZP_04627128.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
43970]
gi|152958712|gb|ABS46173.1| transcriptional regulatory protein OmpR [Yersinia
pseudotuberculosis IP 31758]
gi|238696586|gb|EEP89372.1| Transcriptional regulatory protein ompR [Yersinia kristensenii ATCC
33638]
gi|238707602|gb|EEP99961.1| Transcriptional regulatory protein ompR [Yersinia ruckeri ATCC
29473]
gi|238715898|gb|EEQ07884.1| Transcriptional regulatory protein ompR [Yersinia bercovieri ATCC
43970]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|320352850|ref|YP_004194189.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
gi|320121352|gb|ADW16898.1| adenylate/guanylate cyclase [Desulfobulbus propionicus DSM 2032]
Length = 357
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED +R L K LGK GY V + ++G A +R L+L DI+MP+MDG+EL
Sbjct: 8 ILVVEDSPINQRLLCKLLGKEGYAVRTADHGQEALALLRTFRPDLILLDILMPQMDGLEL 67
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E D+ V+FI+ + ++KPFH +++ ++ L +
Sbjct: 68 CRLLKVGEATRDIPVIFISSLDDTSDKLSGFEAGGVDYITKPFHPAEVLARISTHLKL 125
>gi|313606840|gb|EFR83490.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes FSL F2-208]
gi|332312931|gb|EGJ26026.1| Response regulator [Listeria monocytogenes str. Scott A]
Length = 246
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 13 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 73 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 129
>gi|238758700|ref|ZP_04619874.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
35236]
gi|238702997|gb|EEP95540.1| Transcriptional regulatory protein ompR [Yersinia aldovae ATCC
35236]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|90407312|ref|ZP_01215498.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
CNPT3]
gi|90311595|gb|EAS39694.1| hypothetical DNA-binding response regulator OmpR [Psychromonas sp.
CNPT3]
Length = 242
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +L+ +D ++R L + L + Y V NG K++ L++ D+++P DG
Sbjct: 3 NKHLLIVDDHQEIRELLQRFLKQHQYRVSVAINGQEMKKKLKTAQIDLIILDLMLPGEDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R ++ V+ ++ +SKPF+ +L+ + +L
Sbjct: 63 LTLCRNLRAQ-SNIPVIMLSAMGEEMDKIIGLEMGADDYISKPFNPHELLARIKAVLRR 120
>gi|294495497|ref|YP_003541990.1| response regulator receiver protein [Methanohalophilus mahii DSM
5219]
gi|292666496|gb|ADE36345.1| response regulator receiver protein [Methanohalophilus mahii DSM
5219]
Length = 170
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +D+ D +AL GY V+ NG + + + E+ L+L D++MP+MDG
Sbjct: 48 QTILIIDDEPDAIIAAKRALQSEGYNVIEAYNGKTGLEAIEEKTPDLILLDVMMPDMDGF 107
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ EL + ++ +T V + ++KPF+LR+L + +L
Sbjct: 108 EICKQLKKDELYNHIPIIMLTAKGEVDDRIEGIETGADDYITKPFNLRELKARIRMVLRR 167
>gi|288961886|ref|YP_003452196.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288914166|dbj|BAI75652.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 230
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD +R + AL + G+ VV +G + + L+L DI MPE+DG E
Sbjct: 3 KILLIDDDPHIRDIVRFALKREGFAVVEAGDGVQGLALAQADSPDLILLDIGMPEIDGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ ++KPF R+L V +L
Sbjct: 63 VCRRLRRE-SRVPIIFLSSRDDEIDRILGLELGGDDYVTKPFSPRELTARVKAVLRR 118
>gi|326797358|ref|YP_004315178.1| PhoB family transcriptional regulator [Marinomonas mediterranea
MMB-1]
gi|326548122|gb|ADZ93342.1| two component transcriptional regulator PhoB, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 231
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+L+ +D+ +R + AL AGYE + N ++ + + L+L D +MP
Sbjct: 1 MTGKKVLIIDDEAPIREMIAVALEMAGYEYLEAENAQHGHEIIVDHRPDLILVDWMMPGG 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIEL RR + ++ V+ +T + ++KPF R+LV + +
Sbjct: 61 SGIELTRRLKKDSTTAEIPVIMLTAKSEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|313622401|gb|EFR92865.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria innocua FSL J1-023]
Length = 240
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|291568228|dbj|BAI90500.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
Length = 1336
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD + L L Y V NG A + + L+L D++MP M G
Sbjct: 872 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 931
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E P L +M +T ++ LSKP + +L+ + + I
Sbjct: 932 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 991
Query: 121 K 121
K
Sbjct: 992 K 992
>gi|300854624|ref|YP_003779608.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
gi|300434739|gb|ADK14506.1| regulatory protein VanR [Clostridium ljungdahlii DSM 13528]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + + L G+ + NG A V E L + D+++P++D
Sbjct: 1 MSINILVVDDEQSIADLIEVYLKNEGFTIYKFYNGQDALRCVESEQLELAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E + V+ +T ++KPF +LV V L
Sbjct: 61 GFTICQKIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119
>gi|291562685|emb|CBL41501.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + +L + GYEV +G A ++ +E + ++L D+++P DG E
Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGYEVDCAYDGDEAIERAKEREYDVVLLDVMLPGHDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E ++ ++ +T ++KPF++ ++ + ++ N
Sbjct: 63 VCQTIRE-FSEMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRRNN 120
>gi|121535017|ref|ZP_01666835.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121306430|gb|EAX47354.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 231
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +L+ +DD + L K G+ ++G A DK+RE+ +++ D+++P +
Sbjct: 1 MSKNSVLIVDDDVKIAALLKAYFEKDGFITYIAHDGYQALDKIREQKPDIVVLDLMLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RRA ++ D+ ++ +T A ++KPF R++V V +L
Sbjct: 61 DGWEVCRRARKIG-DIPILMLTARDEEADRLIGLEMGADDYVTKPFSAREVVARVRAILR 119
Query: 120 IKN 122
+
Sbjct: 120 RSH 122
>gi|114794859|pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
gi|114794860|pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
gi|114794861|pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 124
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|145222173|ref|YP_001132851.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315442611|ref|YP_004075490.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145214659|gb|ABP44063.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315260914|gb|ADT97655.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length = 238
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + +NG +A DK RE ++ D++MP MDG
Sbjct: 13 RVLVVDDEANIVELLSVSLKFQGFEVHTASNGPAALDKAREVRPDAIILDVMMPGMDGFG 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 73 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 129
>gi|269124841|ref|YP_003298211.1| winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268309799|gb|ACY96173.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length = 244
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++R L +L AG+EVV+ +G +A + L++ D+++P+ DG
Sbjct: 18 RLLVVEDDANIRELLAGSLRFAGFEVVTATSGTTAVEAAHRHRPDLIVLDVMLPDFDGFA 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+F+T AV ++KPF L +++ ++ +L
Sbjct: 78 VVRRLRSGGTHTPVLFLTARDAVGDRITGLTIGGDDYVTKPFSLEEVIARIHAILRR 134
>gi|159899580|ref|YP_001545827.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892619|gb|ABX05699.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 227
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + L L GY ++ ++G + D R E L+L D+++P +D
Sbjct: 1 MSAKILIVEDERKIAVGLQNYLEGVGYSTITASDGQAGLDMARREQPDLVLLDLMLPMVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T + ++KPF R +V + +L
Sbjct: 61 GFTVCRTLRAE-SSVPIIMLTARVEEVDSLAGLELGADDYITKPFSPRQVVARIKAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 VN 121
>gi|317492787|ref|ZP_07951211.1| phosphate regulon transcriptional regulatory protein PhoB
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918909|gb|EFV40244.1| phosphate regulon transcriptional regulatory protein PhoB
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA + + E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNSLSEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L ++ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332653992|ref|ZP_08419736.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
gi|332517078|gb|EGJ46683.1| DNA-binding response regulator ArlR [Ruminococcaceae bacterium D16]
Length = 224
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL ED++ + R + L GYEV +G S ++ + L+L DI++P++
Sbjct: 1 MAEKILLVEDEEKLARMVEMELRYEGYEVTKAFDGRSGLEQALSGKYDLVLLDIMLPQLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR DL V+ +T +V ++KPF + +L+ + L
Sbjct: 61 GMEVLRRLRRE-SDLPVIMLTARDSVIDKVSGLDSGADDYITKPFAIEELLARIRAALRK 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|86739024|ref|YP_479424.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86565886|gb|ABD09695.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G++V++ G +A + L++ D+++P++DG E
Sbjct: 6 RVLVVDDEPNIVDLLRMALRFHGFDVLTATTGRAALELAVAARPDLMILDVMLPDIDGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V++++ A ++KPF + +L+ V +L
Sbjct: 66 ICRRLRADGHPVPVVYLSARNAHRDKIAGLTYGGDDYVTKPFAVDELLARVRAVLRR 122
>gi|22127786|ref|NP_671209.1| osmolarity response regulator [Yersinia pestis KIM 10]
gi|45439999|ref|NP_991538.1| osmolarity response regulator [Yersinia pestis biovar Microtus str.
91001]
gi|51598054|ref|YP_072245.1| osmolarity response regulator [Yersinia pseudotuberculosis IP
32953]
gi|108809324|ref|YP_653240.1| osmolarity response regulator [Yersinia pestis Antiqua]
gi|108814089|ref|YP_649856.1| osmolarity response regulator [Yersinia pestis Nepal516]
gi|145597386|ref|YP_001161461.1| osmolarity response regulator [Yersinia pestis Pestoides F]
gi|150260818|ref|ZP_01917546.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
gi|162420395|ref|YP_001608057.1| osmolarity response regulator [Yersinia pestis Angola]
gi|165928014|ref|ZP_02223846.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936270|ref|ZP_02224839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010577|ref|ZP_02231475.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213187|ref|ZP_02239222.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398927|ref|ZP_02304451.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418957|ref|ZP_02310710.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425688|ref|ZP_02317441.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170022433|ref|YP_001718938.1| osmolarity response regulator [Yersinia pseudotuberculosis YPIII]
gi|186897254|ref|YP_001874366.1| osmolarity response regulator [Yersinia pseudotuberculosis PB1/+]
gi|218927347|ref|YP_002345222.1| osmolarity response regulator [Yersinia pestis CO92]
gi|229836383|ref|ZP_04456550.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis Pestoides A]
gi|229839992|ref|ZP_04460151.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842073|ref|ZP_04462228.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis biovar Orientalis str. India
195]
gi|229904626|ref|ZP_04519737.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis Nepal516]
gi|270488161|ref|ZP_06205235.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
gi|294502226|ref|YP_003566288.1| osmolarity response regulator [Yersinia pestis Z176003]
gi|21960915|gb|AAM87460.1|AE013996_5 response regulator (sensor, EnvZ) [Yersinia pestis KIM 10]
gi|45434854|gb|AAS60415.1| transcriptional regulatory protein [Yersinia pestis biovar Microtus
str. 91001]
gi|51591336|emb|CAH23002.1| transcriptional regulatory protein [Yersinia pseudotuberculosis IP
32953]
gi|108777737|gb|ABG20256.1| transcriptional regulatory protein [Yersinia pestis Nepal516]
gi|108781237|gb|ABG15295.1| transcriptional regulatory protein [Yersinia pestis Antiqua]
gi|115345958|emb|CAL18822.1| transcriptional regulatory protein [Yersinia pestis CO92]
gi|145209082|gb|ABP38489.1| transcriptional regulatory protein [Yersinia pestis Pestoides F]
gi|149290226|gb|EDM40303.1| transcriptional regulatory protein [Yersinia pestis CA88-4125]
gi|162353210|gb|ABX87158.1| transcriptional regulatory protein OmpR [Yersinia pestis Angola]
gi|165915884|gb|EDR34492.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919963|gb|EDR37264.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990667|gb|EDR42968.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205485|gb|EDR49965.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962951|gb|EDR58972.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051431|gb|EDR62839.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055378|gb|EDR65172.1| transcriptional regulatory protein OmpR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169748967|gb|ACA66485.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186700280|gb|ACC90909.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229678744|gb|EEO74849.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis Nepal516]
gi|229690383|gb|EEO82437.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis biovar Orientalis str. India
195]
gi|229696358|gb|EEO86405.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706451|gb|EEO92458.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis Pestoides A]
gi|262360305|gb|ACY57026.1| osmolarity response regulator [Yersinia pestis D106004]
gi|262364256|gb|ACY60813.1| osmolarity response regulator [Yersinia pestis D182038]
gi|270336665|gb|EFA47442.1| transcriptional regulatory protein OmpR [Yersinia pestis KIM D27]
gi|294352685|gb|ADE63026.1| osmolarity response regulator [Yersinia pestis Z176003]
gi|320013272|gb|ADV96843.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|228993566|ref|ZP_04153474.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228766157|gb|EEM14803.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y+V+ +G A EE L++ DI++PE+D
Sbjct: 1 MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|261856844|ref|YP_003264127.1| PhoB family transcriptional regulator [Halothiobacillus
neapolitanus c2]
gi|261837313|gb|ACX97080.1| two component transcriptional regulator PhoB, winged helix family
[Halothiobacillus neapolitanus c2]
Length = 230
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +R + ALG+AGY+++ ++ + A++++ + L+L D ++P GI
Sbjct: 4 KTILIVEDEKPIREMVTFALGRAGYDLIEASDVSEAFEQLSHKLPDLVLLDWMLPGASGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ARR E+ D+ ++ +T ++KPF R+L+ + +L
Sbjct: 64 EFARRMKRDEITRDVPIVMLTARGEEEDKVSGLEAGADDYITKPFSPRELMARIKAVLRR 123
>gi|6862579|gb|AAD30119.2| DNA binding response regulator RpaB [Tolypothrix sp. PCC 7601]
Length = 233
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+D+ +RR L L GY+VV+ +G A + R+ L++ D++MP++DG + +
Sbjct: 2 VDDEASIRRILETRLSMIGYDVVTAGDGEEALETFRKADPDLVVLDVMMPKLDGYGVCQE 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T VA + KPF ++L + +L
Sbjct: 62 LRKE-SDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113
>gi|330820065|ref|YP_004348927.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia gladioli BSR3]
gi|327372060|gb|AEA63415.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia gladioli BSR3]
Length = 243
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV C NG ++ + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIAEVLALHLRDERYEVVHCANGDDGLRRLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA ++ ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMERYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122
>gi|271970052|ref|YP_003344248.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270513227|gb|ACZ91505.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 234
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R L +L ++G+EVV+ +G A L++ D+++P+MDG
Sbjct: 10 RLLVVDDEPNIRELLSASLRRSGFEVVTAADGREAVHFAERIRPDLVVLDVMLPDMDGFA 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A R E+ + V+F+T A ++KPF L +++ + +L
Sbjct: 70 VAGRLREMGGQMPVVFLTARDATDDKVAGLRV-ADDYVTKPFSLEEVLARIRAVLRR 125
>gi|256830427|ref|YP_003159155.1| winged helix family two component transcriptional regulator
[Desulfomicrobium baculatum DSM 4028]
gi|256579603|gb|ACU90739.1| two component transcriptional regulator, winged helix family
[Desulfomicrobium baculatum DSM 4028]
Length = 231
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ ED+ D+ L L GY+ +G V+ E L+L D+++P M
Sbjct: 1 MAHKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + + ++ +T + KPF R+L+ + +L
Sbjct: 61 GTDVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|225570802|ref|ZP_03779825.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
15053]
gi|225160264|gb|EEG72883.1| hypothetical protein CLOHYLEM_06905 [Clostridium hylemonae DSM
15053]
Length = 226
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + LG+ GY V+ +G A + E+ +L++ D++MP+
Sbjct: 1 MDKVKILVVDDESRMRKLVRDFLGREGYTVLEAGDGMEAMEIFYEDKEIALVILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + V+ +T + + +SKPF + LV V +L
Sbjct: 61 MDGWQVCREIRQ-SSQTPVIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSH 123
>gi|218460387|ref|ZP_03500478.1| two component transcriptional regulator, winged helix family
protein [Rhizobium etli Kim 5]
Length = 218
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + AL +AG + G A R L++ DI MP+MD
Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLTSTAVRTGTEAMAAFRRGNIDLIILDIGMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + L ++F++ ++KPF R+L+ V +L
Sbjct: 61 GLEVCRQIRK-TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119
>gi|159037874|ref|YP_001537127.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157916709|gb|ABV98136.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 248
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + NG +A R+ ++ D+++P++DG
Sbjct: 23 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGNGMAALSTARQFQPDAVVLDVMLPDLDGFA 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E+ P + V+F+T AV ++KPF L +++ + LL
Sbjct: 83 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 139
>gi|322391284|ref|ZP_08064755.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
gi|321145888|gb|EFX41278.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|308185867|ref|YP_003929998.1| phosphate regulon transcriptional regulatory protein phoB [Pantoea
vagans C9-1]
gi|317047132|ref|YP_004114780.1| winged helix family two component transcriptional regulator
[Pantoea sp. At-9b]
gi|308056377|gb|ADO08549.1| Phosphate regulon transcriptional regulatory protein phoB [Pantoea
vagans C9-1]
gi|316948749|gb|ADU68224.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA K+ E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGKLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++L+ + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229088212|ref|ZP_04220152.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-44]
gi|228695108|gb|EEL48144.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-44]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+A+D+ ++ + L K GY V+ +G A + +P L++ DI+MP+M
Sbjct: 1 MNRISILIADDEVEVADLIAIHLEKEGYHVIKVADGKEAIRVIHSQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ + ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRAQY-HMPIIFLSAKTSDFDKVTGLVIGADDYMTKPFTPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|229012369|ref|ZP_04169546.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
gi|229167829|ref|ZP_04295561.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|228615645|gb|EEK72738.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH621]
gi|228749005|gb|EEL98853.1| Two component transcriptional regulator, winged helix [Bacillus
mycoides DSM 2048]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q IL+A+D+ ++ + L K GY VV +G A ++ +P L++ DI+MP+M
Sbjct: 1 MKQISILIADDEVEIAELIGIHLEKEGYHVVKATDGEEAVLIIQSQPIDLVILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R+ ++ ++F++ + ++KPF +LV VN L
Sbjct: 61 DGYEVTRQIRVKY-NMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFAPIELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|196231912|ref|ZP_03130768.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196224034|gb|EDY18548.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 234
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+A+D+ D+ + + L AGY V+ +G SA ++ R+ +L++ D+++PEM G
Sbjct: 7 NKRILVADDEPDVLQLVSTNLKNAGYNVLKAEDGLSALEQARQTSPALIVLDLMLPEMSG 66
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + + V+ +T A ++KPF R+LV V +L
Sbjct: 67 LEVCKVLKRETATNRIPVIMLTAKAEEVDRIVGLELGADDYMTKPFSPRELVLRVKSVLR 126
Query: 120 I 120
Sbjct: 127 R 127
>gi|158338214|ref|YP_001519391.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
marina MBIC11017]
gi|158308455|gb|ABW30072.1| PAS/PAC sensor signal transduction histidine kinase [Acaryochloris
marina MBIC11017]
Length = 545
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D + + L AGY V + +G A ++ P +L+L DI MP MDG E+
Sbjct: 7 IMVVDDTPANLEVISETLSSAGYRVAAAISGERALKRLHTHPPALILLDIQMPVMDGFEV 66
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ ++FIT + +SKPF +L+ V L +
Sbjct: 67 CRQIKANAATANIPIIFITARSDTQSILHGFEMGAVDYISKPFQEAELLARVRTHLQL 124
>gi|229160526|ref|ZP_04288521.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
gi|228622936|gb|EEK79767.1| Transcriptional regulatory protein srrA [Bacillus cereus R309803]
Length = 238
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIDEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|172038873|ref|YP_001805374.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|171700327|gb|ACB53308.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 252
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---------FSLLLT 52
+IL+ ED+D +R ++ AL GYE+ + N+G SA + +++E F LL+
Sbjct: 18 THRILVVEDEDVIRDMIVLALEDEGYEITAVNDGRSALNLLQQEDKNSQATETEFDLLVL 77
Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
D+++P+++G+++ R + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 DLMLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137
Query: 113 EVNRLLTIKN 122
L+ +N
Sbjct: 138 RCRALIRRQN 147
>gi|256376753|ref|YP_003100413.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255921056|gb|ACU36567.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + + L GYEV + ++GA A D VR ++ D+ MP + G++
Sbjct: 2 HILVVDDEVAVAEAVTRTLRFEGYEVTTAHDGAQALDLVRSLRPDGVILDVTMPVLGGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R V+ +T A V+ L+KPF L++L+ V L+
Sbjct: 62 ACRALRASGDTTPVLMLTARAEVSDRVAGLDAGADDYLAKPFALQELLARVRALVRR 118
>gi|254417391|ref|ZP_05031133.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196175826|gb|EDX70848.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 684
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 1 MNQK--------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLT 52
M+++ IL+ +D D R L L GYEV +G A + V +P L+L
Sbjct: 1 MSERQSQAIKGDILIVDDIPDNLRILFTMLANQGYEVRRVISGKQALNAVNTDPPDLILL 60
Query: 53 DIVMPEMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
DI MPEMDG E+ +R E ++ V+F++ V + ++KPF L ++
Sbjct: 61 DIKMPEMDGYEVCQRLKADEKTAEIPVIFLSALDEVWDKVKAFEVGGVDYITKPFQLEEV 120
Query: 111 VNEVNRLLTIKN 122
+ V LT+++
Sbjct: 121 IARVKTQLTLRH 132
Score = 124 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ ++ + L + GY+ +NG D + + + ++L D+ MPEMDG+
Sbjct: 562 RILLAEDNIVNQKVELLLLKRLGYQADLVSNGQEVLDAISRQSYDVILMDVQMPEMDGLT 621
Query: 64 LARRATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + ++ +T A +SKP DL+ V +++ ++
Sbjct: 622 ATRYICQNYSQRPWIIALTANAMQEDRETCLKAGMDDYISKPIRQADLI-RVFKMIPLR 679
Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61
+++L+ +D+ + L + G S +G A + ++E F + + D MPEM+G
Sbjct: 416 KRVLIIDDNPTSCQILTQQTQCWGMIARSTQSGNEALAWLNQKEAFDVAIIDRQMPEMNG 475
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L + +L ++ +T + A L KP L L N + ++L
Sbjct: 476 LTLGLQIHNQSGFKELPLVLLTPIGKMTTKTSLIERHFAACLPKPIKLGQLYNTLTQVLG 535
Query: 120 IK 121
+
Sbjct: 536 RQ 537
>gi|129157|sp|P28257|YCF27_GALSU RecName: Full=Probable transcriptional regulator ycf27; AltName:
Full=OmpR-like protein
gi|73047|pir||RGKKOR regulatory protein ompR - red alga (Cyanidium caldarium)
chloroplast
gi|11279|emb|CAA44458.1| regulatory protein [Cyanidium caldarium]
gi|254505|gb|AAA10400.1| OmpR-like protein [Cyanidium caldarium]
Length = 255
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+A+D+ +RR L L GYEV++ +G SA +E +L++ D++MP++DG
Sbjct: 7 KEKILIADDESSIRRILETRLSIIGYEVLTAPDGRSALFLFHKEHPNLVVLDVMMPKIDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T V + KPF ++L + +L
Sbjct: 67 YGVCQEIRKE-SDIPIIMLTALGDVTDRITGLELGADDYVVKPFSPKELEARIRCVLRR 124
>gi|310766801|gb|ADP11751.1| Response regulator in two-component regulatory system with PhoR
[Erwinia sp. Ejp617]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + A + + E L+L D ++P
Sbjct: 1 MVKRILVVEDEAPIREMLCFVLEQNDYQPIEAADYDRAVNLLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|297243563|ref|ZP_06927494.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis AMD]
gi|296888314|gb|EFH27055.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis AMD]
Length = 246
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MNQK----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + +L++ D+++
Sbjct: 1 MSKNVEASIVVVDDEPSIRELLVASLHFAGFEVETAASGSEAVEVIERVNPNLIVMDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQNGIKVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|27364306|ref|NP_759834.1| osmolarity response regulator [Vibrio vulnificus CMCP6]
gi|320157697|ref|YP_004190076.1| two-component system response regulator OmpR [Vibrio vulnificus
MO6-24/O]
gi|27360424|gb|AAO09361.1| Two-component system response regulator OmpR [Vibrio vulnificus
CMCP6]
gi|319933009|gb|ADV87873.1| two-component system response regulator OmpR [Vibrio vulnificus
MO6-24/O]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG+
Sbjct: 6 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|197286720|ref|YP_002152592.1| osmolarity transcriptional regulator [Proteus mirabilis HI4320]
gi|227355090|ref|ZP_03839501.1| two-component system response regulator [Proteus mirabilis ATCC
29906]
gi|194684207|emb|CAR45696.1| osmolarity transcriptional regulator (two-component system response
regulator) [Proteus mirabilis HI4320]
gi|227164877|gb|EEI49724.1| two-component system response regulator [Proteus mirabilis ATCC
29906]
Length = 240
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +DD +R L + L + G+++ + N + E L++ D+++P DG
Sbjct: 4 SYKVLIVDDDLRLRSLLERYLTEQGFQIRTAANSDQMDRLLTRESIHLIVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T +SKPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYISKPFNPRELLARIRAVLRRQ 123
>gi|206977475|ref|ZP_03238370.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217959463|ref|YP_002338015.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229138688|ref|ZP_04267270.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
gi|206744325|gb|EDZ55737.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217066890|gb|ACJ81140.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228644807|gb|EEL01057.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
Length = 225
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|1653495|dbj|BAA18408.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 234
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+D+ +RR L L GYEVV+ +G A E L++ D++MP++DG + +
Sbjct: 2 VDDEASIRRILETRLSMIGYEVVTAADGEEAIATFHESDPDLVVLDVMMPKLDGYGVCQE 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T VA + KPF ++L + +L
Sbjct: 62 LRKE-SDIPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRSVLRR 113
>gi|22124885|ref|NP_668308.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis KIM 10]
gi|45440577|ref|NP_992116.1| phosphate regulon transcriptional regulator [Yersinia pestis biovar
Microtus str. 91001]
gi|165926563|ref|ZP_02222395.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. F1991016]
gi|166011007|ref|ZP_02231905.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166212953|ref|ZP_02238988.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167399213|ref|ZP_02304737.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167421696|ref|ZP_02313449.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167423518|ref|ZP_02315271.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|270489463|ref|ZP_06206537.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis KIM D27]
gi|294504931|ref|YP_003568993.1| positive response regulator for pho regulon [Yersinia pestis
Z176003]
gi|21957719|gb|AAM84559.1|AE013701_4 positive response regulator for pho regulon [Yersinia pestis KIM
10]
gi|45435434|gb|AAS60993.1| phosphate regulon transcriptional regulatory protein [Yersinia
pestis biovar Microtus str. 91001]
gi|165921491|gb|EDR38688.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165990007|gb|EDR42308.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166205740|gb|EDR50220.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166960615|gb|EDR56636.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167051717|gb|EDR63125.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167057688|gb|EDR67434.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|262362995|gb|ACY59716.1| positive response regulator for pho regulon [Yersinia pestis
D106004]
gi|262366919|gb|ACY63476.1| positive response regulator for pho regulon [Yersinia pestis
D182038]
gi|270337967|gb|EFA48744.1| phosphate regulon transcriptional regulatory protein PhoB [Yersinia
pestis KIM D27]
gi|294355390|gb|ADE65731.1| positive response regulator for pho regulon [Yersinia pestis
Z176003]
Length = 239
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|332981484|ref|YP_004462925.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332699162|gb|AEE96103.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ M + L +L + GYE + +G +K E + L++ DI++P+++
Sbjct: 1 MAKKILIIDDERIMVKGLKFSLEQDGYETDAAYDGEEGLNKALNEHYDLIILDIMLPKIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ E + ++ +T L+KPF++ +L V +
Sbjct: 61 GLEVCRQVREQ-SSVPIIMLTAKGDDMDKILGLEYGADDYLAKPFNILELKARVKAIFRR 119
>gi|237799889|ref|ZP_04588350.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806381|ref|ZP_04593085.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022744|gb|EGI02801.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027494|gb|EGI07549.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 245
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA E LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEASSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|256823535|ref|YP_003147498.1| winged helix family two component transcriptional regulator
[Kangiella koreensis DSM 16069]
gi|256797074|gb|ACV27730.1| two component transcriptional regulator, winged helix family
[Kangiella koreensis DSM 16069]
Length = 240
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + KIL+ +DD +R L + L + + V + N + E + L++ D+++P
Sbjct: 1 MTEETPKILVVDDDVRLRSLLERYLKEQDFMVRTVENAEQMDRFLERENYHLMVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR + + ++ +T L+KPF+ R+L+ + +
Sbjct: 61 GEDGLSICRRLRSQNNPIPIIMLTAKGDEVDRIVGLEVGADDYLAKPFNPRELLARIRAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRQ 124
>gi|34495671|ref|NP_899886.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
gi|34101526|gb|AAQ57895.1| response regulator OmpR [Chromobacterium violaceum ATCC 12472]
Length = 243
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY V + + K+ L++ D++MP DG+
Sbjct: 5 KILVVDDDAKLRELLTRYLTQQGYIVETLPDPKDLDRKLARNRPDLIVLDVMMPGEDGLA 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR L V+ +T L KPF+ R+L + +L +
Sbjct: 65 VVRRLRAQGETLPVIMLTARGEDIDRILGLEMGADDYLPKPFNPRELTARIQSVLRRHH 123
>gi|261346810|ref|ZP_05974454.1| transcriptional regulatory protein CpxR [Providencia rustigianii
DSM 4541]
gi|282565210|gb|EFB70745.1| transcriptional regulatory protein CpxR [Providencia rustigianii
DSM 4541]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A ++ LLL D++MP+ +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + +L V+ +T + L KPF+ R+LV + LL N
Sbjct: 61 ETLKELRQLH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119
>gi|78183737|ref|YP_376171.1| two component transcriptional regulator [Synechococcus sp. CC9902]
gi|78168031|gb|ABB25128.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9902]
Length = 253
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L +GY VV +G A + E L++ D+++P++DG
Sbjct: 10 KATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 70 FAVCRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 127
>gi|15893854|ref|NP_347203.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15023431|gb|AAK78543.1|AE007571_9 Response regulator (REC, HTH domains) [Clostridium acetobutylicum
ATCC 824]
gi|325507981|gb|ADZ19617.1| Response regulator (REC, HTH domains) [Clostridium acetobutylicum
EA 2018]
Length = 233
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ +L+ +D+ ++R + L G+ V+ NG A + +++ L+L DI+MP+MDG
Sbjct: 3 SRTVLVVDDEKEIRDLIGIYLNNEGFNVIKAENGVEALEILKDTEVQLVLLDIMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + E D + ++ ++ +SKPF+ +L+ V +
Sbjct: 63 ITTCMKIRE-DKNTPIIMLSAKGEDMDKILGLTTGADDYISKPFNPLELIARVKSQIRR 120
>gi|229101090|ref|ZP_04231857.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
gi|228682333|gb|EEL36443.1| hypothetical protein bcere0019_2780 [Bacillus cereus Rock3-28]
Length = 237
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ DI+MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNKNNYNLVILDIMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALMRR 120
>gi|90408203|ref|ZP_01216371.1| elongation factor P [Psychromonas sp. CNPT3]
gi|90310733|gb|EAS38850.1| elongation factor P [Psychromonas sp. CNPT3]
Length = 241
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +L+ +DD D+R L + L K + V++ +G + + L++ D+++P
Sbjct: 1 MTETKQVLVVDDDKDIRELLAEYLTKNNFSVITAGDGIEMDAHLAQTEPDLIILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG L +R + + ++ +T + ++KPF R+L+ + LL
Sbjct: 61 DDGFILCQRIRQ-TSMVPIIMLTANSDELDRILGLEIGADDYIAKPFSPRELLARIKALL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRNH 123
>gi|284052127|ref|ZP_06382337.1| two component transcriptional regulator, winged helix family
protein [Arthrospira platensis str. Paraca]
Length = 227
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L +AL + GY V G A + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++F+T + L KPF LR+L+ V LL
Sbjct: 62 ICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|297569043|ref|YP_003690387.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
AHT2]
gi|296924958|gb|ADH85768.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfurivibrio alkaliphilus AHT2]
Length = 461
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L + L GYE + + + R L++TD+ MP MDG+
Sbjct: 2 KTILVVDDEPNYLVILSELLRDEGYETFTAGSAEEGLEIARHTDLDLIITDMRMPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + ++P L V+ IT F V + L+KPF +L+ + + L
Sbjct: 62 ELLKTIKGINPSLPVIMITAFGEVDKAVAAMRAGAFNYLTKPFDNDELLVSIRKALE 118
>gi|229590586|ref|YP_002872705.1| putative sensory box GGDEF/EAL domain-containing protein
[Pseudomonas fluorescens SBW25]
gi|229362452|emb|CAY49358.1| putative sensory box GGDEF/EAL domain protein [Pseudomonas
fluorescens SBW25]
Length = 409
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +R+ L L GY+ ++ +G A V ++P L+L DI+MP MDG E
Sbjct: 7 TLLIVDDEPQVRKLLETLLQHEGYQTLTAGSGEEALQLVAQQPPDLILLDIMMPGMDGYE 66
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A + E + ++ ++ + + + + +SKP +L V LL +K
Sbjct: 67 VASQLKGDETTAGIPIIMLSALSEPSARVNGLEAGAEEFISKPVERVELWLRVRNLLRLK 126
>gi|210609810|ref|ZP_03288117.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
gi|210152737|gb|EEA83743.1| hypothetical protein CLONEX_00301 [Clostridium nexile DSM 1787]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ + + + +L + G EV +G A + + + LLL D+++P+MD
Sbjct: 1 MGKRVLVVDDEKLIVKGIRFSLMQDGMEVDCAYDGEEALELAKNNEYDLLLLDVMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ + D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFAVCQQIRD-FSDVPIVMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|150389552|ref|YP_001319601.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949414|gb|ABR47942.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 234
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD+D+R + L K GY+V+ +G A + L++ D+++P +DGI
Sbjct: 4 ETILVVDDDEDIREIITLYLEKEGYQVILAMDGHQALECAFSFNPDLVILDMMIPGLDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++F++ + + +SKPF +L+ + L
Sbjct: 64 EVCQALRKNLS-TPIIFLSCKSTPSDKSIGLIAGGDDYMSKPFDTMELLARIKAHLRR 120
>gi|313617204|gb|EFR89697.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria innocua FSL S4-378]
Length = 240
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|229162433|ref|ZP_04290394.1| Two-component response regulator [Bacillus cereus R309803]
gi|228620912|gb|EEK77777.1| Two-component response regulator [Bacillus cereus R309803]
Length = 225
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|260906859|ref|ZP_05915181.1| putative two-component system response regulator [Brevibacterium
linens BL2]
Length = 226
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +DD + + L G+E C G A+D+ ++ L+L D+++P D
Sbjct: 1 MNARILVVDDDTALAEMIGIVLKSEGFEPFFCATGDQAFDEFQKVNPDLVLLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E+ + ++ +T + + KPF ++L+ V L I
Sbjct: 61 GLEVCREIREI-SSVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELIARVRARLRI 119
>gi|92116259|ref|YP_575988.1| two component transcriptional regulator [Nitrobacter hamburgensis
X14]
gi|91799153|gb|ABE61528.1| two component transcriptional regulator, winged helix family
[Nitrobacter hamburgensis X14]
Length = 233
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L GYEV + G A ++E L++ D ++P +
Sbjct: 1 MSARILVVEDEEALTTLLRYNLDAEGYEVETVARGDEADTWLKERTPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|16804539|ref|NP_466024.1| two-component response phosphate regulator [Listeria monocytogenes
EGD-e]
gi|224503258|ref|ZP_03671565.1| two-component response phosphate regulator [Listeria monocytogenes
FSL R2-561]
gi|254900361|ref|ZP_05260285.1| two-component response phosphate regulator [Listeria monocytogenes
J0161]
gi|16411989|emb|CAD00579.1| two-component response phosphate regulator [Listeria monocytogenes
EGD-e]
Length = 236
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|323701350|ref|ZP_08113024.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323533609|gb|EGB23474.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 235
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ + L K + V++ +G ++EP L++ D+++P++DG+E
Sbjct: 3 KILVVDDETNILELIKYNLEKDNHRVITALDGEEGLRLAQQEPPDLIILDVMLPKVDGLE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R L ++ ++ + ++KPF R+L V L
Sbjct: 63 VCRCLRSHPSTSRLPILMVSARRETVDHVVGLEMGADDYITKPFSPRELAARVKANLRR 121
>gi|323495068|ref|ZP_08100157.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
gi|323310725|gb|EGA63900.1| DNA-binding response regulator [Vibrio brasiliensis LMG 20546]
Length = 240
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M+ KIL+ +DD ++ L + L K GY+V + N+G + ++ L+L D+++P
Sbjct: 1 MSAKILVVDDDQEICELLEEYLTKQGYQVDAVNDGEQMKATLEQQGYPDLILLDVMLPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ + ++ +T + ++KPF+ R L + +L
Sbjct: 61 DGFTLCQQVR-RHSSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|289644642|ref|ZP_06476707.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289505542|gb|EFD26576.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ L + L + G+ V +G A + E + +++ D+++P +DG E
Sbjct: 2 RVLVVEDETRTATLLRRGLTEEGFAVDIVADGLEAVWQASEIAYDVIVLDLMLPGLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ ++ + V L+KPF +L + L+
Sbjct: 62 VCRRLRAAGRWAPVLMLSARSEVTDRVRGLDVGADDYLAKPFSFDELFARIRALIRR 118
>gi|218508381|ref|ZP_03506259.1| two component transcriptional regulator, winged helix family
protein [Rhizobium etli Brasil 5]
Length = 228
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + A+ +AG + +G+ A R L++ DI MP+MD
Sbjct: 1 MAPRILVVDDEPHIRDVICFAVERAGLTPTAVRSGSEAMAAFRRGNIDLIILDIGMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + L ++F++ ++KPF R+L+ V +L
Sbjct: 61 GLEVCRQIRK-TSGLPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119
>gi|116071684|ref|ZP_01468952.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
gi|116065307|gb|EAU71065.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
Length = 255
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ +RR L+ L +GY VV +G A + E L++ D+++P++DG
Sbjct: 12 KATVLVVDDEAAVRRVLVMRLQLSGYRVVCAEDGEQALELFHSESPDLIVLDVMLPKLDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L + +L
Sbjct: 72 FAVCRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 129
>gi|186686849|ref|YP_001870042.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186469201|gb|ACC85001.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 448
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L L + GY V +G +A +V+ ++L D++MP +DG E
Sbjct: 11 TILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQSYHPDIILLDVMMPGIDGFE 70
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R D+ V+F+T + + ++KP + + + L ++
Sbjct: 71 TCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQLR 130
>gi|329934250|ref|ZP_08284329.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
griseoaurantiacus M045]
gi|329305846|gb|EGG49701.1| PAS/PAC sensor hybrid histidine kinase precursor [Streptomyces
griseoaurantiacus M045]
Length = 1389
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+A+D+ DMR +L + L AGY+V +G A R L+++D++MP +DG
Sbjct: 639 SARVLVADDNADMREYLARLLTAAGYQVTEVTDGVEALAAARRRTPDLVVSDVMMPRLDG 698
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+EL R + V+ ++ A + + L KPF +L+ V
Sbjct: 699 LELVSRLRADPRTASVPVVLLSARAGQEASIEGLRAGADDYLVKPFAAAELLARVRA 755
>gi|238923834|ref|YP_002937350.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
gi|238875509|gb|ACR75216.1| hypothetical protein EUBREC_1462 [Eubacterium rectale ATCC 33656]
Length = 226
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + GYEV+ +G A D +++ +LL+ DI+MP
Sbjct: 1 MDKIKILVVDDESRMRKLVHDFLAREGYEVLEAGDGEEALDIFYQQKDIALLVLDIMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G E+ R + + ++ +T + + +SKPF + LV VN LL
Sbjct: 61 INGFEVCREIRQ-TSKVPIIMLTAKGDERDELNGFDIGADEYISKPFSPKILVARVNALL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRAN 123
>gi|238919113|ref|YP_002932627.1| phosphate regulon transcriptional regulatory protein PhoB,
[Edwardsiella ictaluri 93-146]
gi|238868681|gb|ACR68392.1| phosphate regulon transcriptional regulatory protein PhoB, putative
[Edwardsiella ictaluri 93-146]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R + L + GY+ + + A ++ E L+L D ++P
Sbjct: 1 MTIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L ++ D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQLIKQLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|212712531|ref|ZP_03320659.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
30120]
gi|212684747|gb|EEB44275.1| hypothetical protein PROVALCAL_03626 [Providencia alcalifaciens DSM
30120]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A ++ LLL D++MP+ +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + ++ V+ +T + L KPF+ R+LV + LL N
Sbjct: 61 ETLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119
>gi|195977456|ref|YP_002122700.1| DNA-binding response regulator [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974161|gb|ACG61687.1| DNA-binding response regulator [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 228
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L +AGY V + ++G+ A + ++ + L+++D++MP MD
Sbjct: 1 MTYKILLVDDELEIIDINERYLQQAGYRVTTASDGSQALELFHKDQYDLIISDVMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + PD +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFIGEVLLEKPDQPFLFITAKTSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120
>gi|306520551|ref|ZP_07406898.1| two-component system response regulator [Clostridium difficile
QCD-32g58]
Length = 210
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L GY+V + N+G K ++ + L++ DI+MP +D
Sbjct: 1 MNSSILVIEDDSNIQELISEFLSAEGYQVDTANDGLEGIQKFKQGSYDLVILDIMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++F+T + ++KPF L+ V +L
Sbjct: 61 GYGVCKMIRK-SSSVPIIFLTALNDEGDQLKGFDLECDDYITKPFSFNLLIKRVEAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|294787493|ref|ZP_06752746.1| DNA-binding response regulator PhoP [Parascardovia denticolens
F0305]
gi|315226931|ref|ZP_07868719.1| DNA-binding response regulator [Parascardovia denticolens DSM
10105]
gi|294484849|gb|EFG32484.1| DNA-binding response regulator PhoP [Parascardovia denticolens
F0305]
gi|315121063|gb|EFT84195.1| DNA-binding response regulator [Parascardovia denticolens DSM
10105]
Length = 245
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I++ +D+ +R + +L +G+EV + +G A D + + L++ D+++P++DG
Sbjct: 11 TIVVVDDEPSIRELVSASLHFSGFEVKTAASGTEAIDVITKTDPDLIVLDVMLPDIDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+F+T ++KPF L ++V + +L
Sbjct: 71 VTRRIRQQGIEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 127
>gi|271499555|ref|YP_003332580.1| winged helix family two component transcriptional regulator
[Dickeya dadantii Ech586]
gi|270343110|gb|ACZ75875.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech586]
Length = 229
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVNRLAEPYPELVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|206579530|ref|YP_002239491.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
gi|288936339|ref|YP_003440398.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|206568588|gb|ACI10364.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
gi|288891048|gb|ADC59366.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
Length = 238
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD+D+ L L GY++V +G A ++ ++ + ++ D+++P +D
Sbjct: 1 MAKTILLVEDDEDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L
Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|218441529|ref|YP_002379858.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218174257|gb|ACK72990.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 224
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L + L Y V +G +D ++ + L++ D+++P+++G++
Sbjct: 2 RILLVEDDERIAKALGETLKDRQYVVDLAFDGEQGWDFIQSFSYDLIILDVMLPKLNGVD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R V+ +T + + KPF L +L + LL N
Sbjct: 62 LCQRLRSAGQMTPVLMLTARDTSSDKVKGLDAGADDYVVKPFDLPELTARIRALLRRGN 120
>gi|171911993|ref|ZP_02927463.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 235
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K IL+A+D++D+R + L +AGY+ V +G +VR ++ D++MP
Sbjct: 1 MSDKSLILIADDEEDVRELVGMNLRRAGYDTVEAADGLQTLAQVRRRKPDAIVLDVMMPG 60
Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
DG + + E + + V+ +T LSKPF ++LV V
Sbjct: 61 RDGFGVCQELREDESTRHIPVIMLTAKGQTQDRIAGLERGADDYLSKPFSPKELVLRVQA 120
Query: 117 LLTI 120
LL
Sbjct: 121 LLRR 124
>gi|189426613|ref|YP_001953790.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
gi|189422872|gb|ACD97270.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
Length = 235
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I+L ED+ + R + L + GY V + G +A + +R E L++ D+++P MDG
Sbjct: 5 KPRIMLVEDELHLARGICFNLEQDGYAVSHFDRGETALEALRVERCDLIILDVMLPGMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + ELD + ++ +T + L+KPF+L + + V +L
Sbjct: 65 FQVCKAMRELDSRVPILMLTARSEDVDRVSGLESGADDYLTKPFNLAEFLLRVKGMLRRS 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|238917773|ref|YP_002931290.1| two-component system, OmpR family, response regulator ResD
[Eubacterium eligens ATCC 27750]
gi|238873133|gb|ACR72843.1| two-component system, OmpR family, response regulator ResD
[Eubacterium eligens ATCC 27750]
Length = 233
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K YE +G SA ++ +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDENIAELISLYLTKECYETKIVYDGESALSELSVFKPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R + + ++ ++ ++ + KPF +++V V +L
Sbjct: 64 YQVCREIRKNN-NVPIIMLSAKGETFDKVLGLELGADDYIIKPFETKEMVARVKAVLRRY 122
Query: 122 N 122
+
Sbjct: 123 H 123
>gi|261404682|ref|YP_003240923.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261281145|gb|ACX63116.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 228
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++LL +D+ + +FL L G+EV + ++G A + +++ D++MP M
Sbjct: 4 MHRIRVLLVDDEPHILQFLELGLQNEGFEVRTASDGECALREAAGFEPHVIVLDVMMPGM 63
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + RR E D+ V+ +T + ++KPF +L+ + L
Sbjct: 64 DGLAVCRRLKEEGRDVAVIMLTAKDEIDDRVTGLMTGADDYMAKPFSFEELLARIQARLR 123
Query: 120 IK 121
+
Sbjct: 124 NQ 125
>gi|150388383|ref|YP_001318432.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149948245|gb|ABR46773.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 236
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +KILL EDD+++ + + L K G+ V C +G A + + + L+L D+++P +
Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ ++ E ++ +T + ++KPF + +L+ ++ +L
Sbjct: 61 DGYQVCQKIRE-TSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|296162067|ref|ZP_06844865.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
gi|295887688|gb|EFG67508.1| multi-sensor hybrid histidine kinase [Burkholderia sp. Ch1-1]
Length = 1648
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D+R ++ + L AG++V +G +A + R+E L+L+D++MP +DG
Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHDVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L R D V+ ++ A D L+KPF R+L+ V
Sbjct: 721 LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFSARELLARV 773
Score = 101 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59
+ +L+ EDD+++R +++ L GY V+ + SA V P +L TD+VMP +
Sbjct: 1376 TETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPL 1435
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ +L
Sbjct: 1436 RSTELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIELLSKPYTHEALARKIRYVLQ 1495
Query: 120 IKN 122
+N
Sbjct: 1496 TQN 1498
Score = 82.1 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ +R + L ++++ A + E S++LTD+ + G++
Sbjct: 1533 RILLVEDDELIRASTAELLRMFDFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1592
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
LA + PDL+V+F+TG+ V +A +L KP+ L DL++ + L
Sbjct: 1593 LALEVCAVRPDLRVIFLTGYDLVLTPAQRKVLPHAILLRKPYDLLDLIDALKTPLR 1648
>gi|197302877|ref|ZP_03167929.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
29176]
gi|197298114|gb|EDY32662.1| hypothetical protein RUMLAC_01606 [Ruminococcus lactaris ATCC
29176]
Length = 233
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ NG A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTKMVYNGEDALAAFDTYQPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ + V + KPF +++V V +L
Sbjct: 64 YQVCREIRAK-SVTPIIMLSAKSEVFDKVLGLELGADDYIMKPFDAKEMVARVRAVLRR 121
>gi|169627776|ref|YP_001701425.1| putative DNA-binding response regulator PhoP [Mycobacterium
abscessus ATCC 19977]
gi|169239743|emb|CAM60771.1| Putative DNA-binding response regulator PhoP [Mycobacterium
abscessus]
Length = 247
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G++V + ++GA+A D R ++ D++MP MDG
Sbjct: 22 KVLVVDDESNIVELLSVSLKFQGFDVYTADSGAAALDLARTVRPDAVILDVMMPGMDGFG 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D +F+T + ++KPF L ++V + +L
Sbjct: 82 VLRRLRADGIDAPTLFLTARDGLQDKIAGLTLGADDYVTKPFSLEEVVARLRVILRR 138
>gi|317050079|ref|YP_004117727.1| winged helix family two component transcriptional regulator
[Pantoea sp. At-9b]
gi|316951696|gb|ADU71171.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
Length = 232
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EV+ ++G A + + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFEVMVASDGEQALNLL-DNTVDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|157692001|ref|YP_001486463.1| response regulator [Bacillus pumilus SAFR-032]
gi|157680759|gb|ABV61903.1| possible response regulator [Bacillus pumilus SAFR-032]
Length = 228
Score = 152 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ ED+ + R L L GYEV G + EE F L+L D+++PE+
Sbjct: 1 MNKGKILVVEDEKKIARVLSLELQYEGYEVTVKETGIDGLQALEEESFDLVLLDVMLPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + + +M IT +V ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRVRKTNTATPIMLITARDSVPDKVSGLDLGANDYITKPFDIEELLARIRAQLR 120
Query: 120 I 120
+
Sbjct: 121 L 121
>gi|308234693|ref|ZP_07665430.1| response regulator receiver domain protein [Gardnerella vaginalis
ATCC 14018]
Length = 246
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ +R L+ +L AG++V + +G+ A D + L++ D+++P++DG +
Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+F+T ++KPF L ++V + +L
Sbjct: 69 TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124
>gi|302382814|ref|YP_003818637.1| PhoB family transcriptional regulator [Brevundimonas subvibrioides
ATCC 15264]
gi|302193442|gb|ADL01014.1| two component transcriptional regulator PhoB, winged helix family
[Brevundimonas subvibrioides ATCC 15264]
Length = 229
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+D + L L K GY+VV +G ++ E L+L D ++P++
Sbjct: 1 MQPYILVMEDEDALATLLQYNLEKEGYDVVVAADGEEGLVQIDERQPDLVLLDWMLPKVS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR +L V+ +T + L+KPF + +L+ + +L
Sbjct: 61 GIEVCRRLRGRPETRNLPVIMLTARGEESDRVRGLDTGADDYLTKPFSMTELIARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|168213412|ref|ZP_02639037.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|170715032|gb|EDT27214.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
Length = 228
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V ++G +A ++ +L++ D+++P +DG+E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|167633009|ref|ZP_02391335.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|229601325|ref|YP_002866373.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|167531821|gb|EDR94486.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|229265733|gb|ACQ47370.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 230
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 1 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 61 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 120
>gi|329767923|ref|ZP_08259435.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
gi|328838586|gb|EGF88189.1| hypothetical protein HMPREF0428_01132 [Gemella haemolysans M341]
Length = 221
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R + K L K Y V SC +G A D V + L++TDI+MP +DG E
Sbjct: 2 KILVVEDERDLNRIITKHLKKNNYSVDSCFDGEEALDFVSYSEYDLIITDIMMPNVDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + V+ +T + + KPF +L+ + L+
Sbjct: 62 FIARLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118
>gi|311744416|ref|ZP_07718217.1| response regulator [Aeromicrobium marinum DSM 15272]
gi|311312221|gb|EFQ82137.1| response regulator [Aeromicrobium marinum DSM 15272]
Length = 249
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ +R + + L GY V +G + + R L++ DI++P +DG++
Sbjct: 11 HVLVVEDEPAVRDVVRRYLEAEGYRVTVAADGITGLETARTAEPDLIVLDIMLPGLDGLQ 70
Query: 64 LARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D + ++ +T + KPF +++LV V +L
Sbjct: 71 ICERLRREDGSAVPIVMLTALGETDDRIAGLTSGADDYVVKPFSVKELVLRVESVLRR 128
>gi|261408624|ref|YP_003244865.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|329927373|ref|ZP_08281632.1| heme response regulator HssR [Paenibacillus sp. HGF5]
gi|261285087|gb|ACX67058.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
gi|328938512|gb|EGG34897.1| heme response regulator HssR [Paenibacillus sp. HGF5]
Length = 224
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ V +G A P L++ DI+MP MDG
Sbjct: 3 TILVADDDANIRELVCLFLRNDGFTTVEAADGKEALSVYGSTPVDLVVLDIMMPMMDGWT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +PDL ++ +T L+KPF +L V LL
Sbjct: 63 LCKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKR 119
>gi|314950224|ref|ZP_07853508.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
gi|313643451|gb|EFS08031.1| response regulator receiver domain protein [Enterococcus faecium
TX0082]
Length = 239
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 18 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D V+ IT A ++KP + +++ V LL
Sbjct: 77 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136
>gi|269119755|ref|YP_003307932.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
gi|268613633|gb|ACZ08001.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
Length = 217
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ +R+ + L K GY V +G D E L+L D++MP+ DG E
Sbjct: 2 KILIVEDEERIRKVVRSFLVKNGYIVREAADGEEGLDLFYEWNPDLVLLDVMMPKKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R V+ +T + KPF L+ L + LL
Sbjct: 62 VCRAIKSE-KTTPVLMLTAKTQEEDEIRGLEIGADDYIRKPFSLKILELRLKNLL 115
>gi|139438317|ref|ZP_01771870.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
25986]
gi|133776514|gb|EBA40334.1| Hypothetical protein COLAER_00859 [Collinsella aerofaciens ATCC
25986]
Length = 231
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ +D+ + + L K G++V +GA A + E+ F L L D+++P++D
Sbjct: 1 MNERILVVDDEKAIADLVGIYLTKEGFDVQIAYSGADAAKAILEQEFDLALLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R V+ +T A + + KPF +L+ V+ L
Sbjct: 61 GFELLRTIRSSH-TYPVIMLTARDAQQDKIGGLSLGADDYVVKPFRPLELIARVHAQLRR 119
>gi|148261933|ref|YP_001236060.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
gi|326405441|ref|YP_004285523.1| phosphate regulon transcriptional regulatory protein PhoB
[Acidiphilium multivorum AIU301]
gi|146403614|gb|ABQ32141.1| two component transcriptional regulator, winged helix family
[Acidiphilium cryptum JF-5]
gi|325052303|dbj|BAJ82641.1| phosphate regulon transcriptional regulatory protein PhoB
[Acidiphilium multivorum AIU301]
Length = 236
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L K+G+ V +G A ++ E L+L D ++P M GIE+
Sbjct: 9 VLVVEDEAPLVTLLRYNLEKSGFRVDEAGDGGEALGRINEAMPDLVLLDWMLPTMSGIEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L V+ +T A ++KPF L+ + LL
Sbjct: 69 CRQLRRKPSTRHLPVIMLTARAEDQDTVRGLETGADDYITKPFSPEALIARIRALLRR 126
>gi|329296532|ref|ZP_08253868.1| winged helix family two component transcriptional regulator
[Plautia stali symbiont]
Length = 229
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA K+ E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAIGKLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++L+ + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTALGEEEDRVRGLELGADDYITKPFSPKELMARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|320181895|gb|EFW56801.1| Two-component system response regulator OmpR [Shigella boydii ATCC
9905]
Length = 239
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQNNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|300859158|ref|YP_003784141.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|300686612|gb|ADK29534.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|302206852|gb|ADL11194.1| Two-component system, OmpR family, response regulator PhoP
[Corynebacterium pseudotuberculosis C231]
gi|302331414|gb|ADL21608.1| Two component system response regulator protein [Corynebacterium
pseudotuberculosis 1002]
gi|308277104|gb|ADO27003.1| Two component system response regulator protein [Corynebacterium
pseudotuberculosis I19]
Length = 237
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ ++ L +L G++V + N+G A + +E + D++MP MDG
Sbjct: 8 TKRILVVDDEPNIVELLNVSLKFQGFDVATANSGVEALEIAKEFKPDAFILDVMMPGMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + D V+++T AV ++KPF L +++ + +L
Sbjct: 68 YELLPKLRAEGLDGPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|229174262|ref|ZP_04301795.1| Two-component response regulator [Bacillus cereus MM3]
gi|228609119|gb|EEK66408.1| Two-component response regulator [Bacillus cereus MM3]
Length = 225
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +LL ED+ +R + G+EV+ +G A + E L++ DI++PE+D
Sbjct: 1 MNKTVLLVEDERRLREIVSDYFRNEGFEVIEAEDGKIALELFAEHEIDLIMLDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T + + ++KPF + LV LL
Sbjct: 61 GWSVCRRIRKE-SAVPIIMLTARSDEDDTLLGFELGADEYVTKPFSPKVLVARAKTLLKR 119
>gi|289208144|ref|YP_003460210.1| PhoB family transcriptional regulator [Thioalkalivibrio sp. K90mix]
gi|288943775|gb|ADC71474.1| two component transcriptional regulator PhoB, winged helix family
[Thioalkalivibrio sp. K90mix]
Length = 229
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL EDD +R L L KAGY V + +A + E+P L+L D ++P+
Sbjct: 1 MAVKILLVEDDTAIREMLQLPLHKAGYAVREAGDVRAAKGLLLEDPPDLILLDWMLPDTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ AR + D+ ++ +T ++KPF R+LV + +L
Sbjct: 61 GLDWARTLKASPITKDIPIIMLTARGEEEDRVRGLDVGTDDYVTKPFSPRELVARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|153934205|ref|YP_001384185.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153934696|ref|YP_001387726.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|226949224|ref|YP_002804315.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|152930249|gb|ABS35749.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152930610|gb|ABS36109.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|226844186|gb|ACO86852.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 228
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQVCQKIRDKVS-CPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|152986115|ref|YP_001350288.1| putative two-component response regulator [Pseudomonas aeruginosa
PA7]
gi|150961273|gb|ABR83298.1| probable two-component response regulator [Pseudomonas aeruginosa
PA7]
Length = 227
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ L L GY V +G S E + L++ D+++P +DG
Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119
>gi|317121610|ref|YP_004101613.1| transcriptional regulator [Thermaerobacter marianensis DSM 12885]
gi|315591590|gb|ADU50886.1| two component transcriptional regulator, winged helix family
[Thermaerobacter marianensis DSM 12885]
Length = 224
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/105 (33%), Positives = 53/105 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + L + L G+ V + +G A RE+P L++ DI+MP MDG+E
Sbjct: 3 RILVVDDDPSVTSLLKRGLAYEGFAVDTAASGEEALKIAREQPPDLVILDIMMPGMDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108
+ RR DP+L V+F+T A A + KPF
Sbjct: 63 VLRRLRAADPELPVLFLTARDAPADQVRGLEAGADDYVVKPFTFE 107
>gi|312127220|ref|YP_003992094.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311777239|gb|ADQ06725.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 234
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + + +D+ D+ + + L + GY V + NG ++ + +++ DI++P++
Sbjct: 1 MSAYTVYVVDDEKDILELVSEYLTQKGYAVKTFENGEGFLEEFEKSEPDIVILDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ +R + + D+ ++ ++ + +SKPF L +L + ++L
Sbjct: 61 DGYEICKRIRK-NSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|228999603|ref|ZP_04159180.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229007150|ref|ZP_04164773.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228754098|gb|EEM03520.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228760129|gb|EEM09098.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 229
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y+V+ +G A EE L++ DI++PE+D
Sbjct: 1 MTKTILIVEDEDILREILKDYFLNEQYKVLEARDGKEALSLFEEEEVHLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSQVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|116873865|ref|YP_850646.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742743|emb|CAK21867.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 236
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGKTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|37678420|ref|NP_933029.1| osmolarity response regulator [Vibrio vulnificus YJ016]
gi|37197159|dbj|BAC93000.1| transcriptional regulator OmpR [Vibrio vulnificus YJ016]
Length = 243
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG+
Sbjct: 10 KILVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 70 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 127
>gi|328949779|ref|YP_004367114.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
gi|328450103|gb|AEB11004.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
Length = 221
Score = 152 bits (386), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L L + +EV+ +G A ++ L++ D+++P MDG
Sbjct: 3 RVLVVDDDPAIREVLAAYLARERFEVLEAEDGLQALEQAPGA--DLVILDLMLPGMDGWR 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A+ PDL ++ +T ++KPF R++V V LL
Sbjct: 61 VAQELRRDWPDLPILMLTARGEEEERVRGFELGADDYVTKPFSPREVVARVRALLRR 117
>gi|324999382|ref|ZP_08120494.1| two component transcriptional regulator, winged helix family
protein [Pseudonocardia sp. P1]
Length = 246
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + +GA+A RE ++ D+++P++DG E
Sbjct: 21 RVLVVDDESTLSDLLSMALRYEGWEVRTAGDGATAVRHAREFRPDAIVLDVMLPDVDGFE 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P++ V+F+T AV ++KPF L +LV + LL
Sbjct: 81 VLRRVRAGTPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRR 137
>gi|317495700|ref|ZP_07954065.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
gi|316914153|gb|EFV35634.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L + GY+V N+G A +K ++ +SL++TDI+MP MD
Sbjct: 1 MVNKILLVDDEIEITEINKRYLEQDGYDVDIANDGKEALEKYKKNKYSLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L LD + +FIT + + + KPF R+LV V +L
Sbjct: 61 GYDLISEVQYLDEEQPFLFITAKTTEPDKIYALSLGADDYIVKPFSPRELVLRVKNILRR 120
>gi|300867618|ref|ZP_07112266.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
gi|300334379|emb|CBN57436.1| two component transcriptional regulator [Oscillatoria sp. PCC 6506]
Length = 233
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L + L + GYEV +NGA+ + + + LL+ D ++P G+
Sbjct: 2 KILLVDDEIELTDPLSRVLTREGYEVDVADNGATGSEFATQGNYDLLILDWMLPGKTGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQKLRSEGRATPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|320012873|gb|ADW07723.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 244
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+AEDD + + L G+EV ++G +A + P LL+ D ++P +D
Sbjct: 1 MSTYVLVAEDDRKQAELIRRYLAHDGHEVSVVHDGRTALGEATRRPPDLLVLDWMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR +L ++ +T + ++KPF R+LV + LL
Sbjct: 61 GLEVCRRLRGAG-ELPILMLTARSTEDDLLRGLDLGADDYMTKPFRPRELVARIRTLLRR 119
>gi|126658415|ref|ZP_01729564.1| two-component response regulator [Cyanothece sp. CCY0110]
gi|126620347|gb|EAZ91067.1| two-component response regulator [Cyanothece sp. CCY0110]
Length = 252
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 67/130 (51%), Gaps = 9/130 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---------FSLLLT 52
+IL+ ED+D +R ++ AL GY++ + NNG SA + ++EE F LL+
Sbjct: 18 THRILVVEDEDVIRDMIVLALEDEGYDITAVNNGRSALNLLQEENKNAKVTETEFDLLIL 77
Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
D+++P+++G+++ R + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 DLMLPQVNGLDICRLLRYQGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137
Query: 113 EVNRLLTIKN 122
L+ +N
Sbjct: 138 RCRALIRRQN 147
>gi|75907014|ref|YP_321310.1| response regulator receiver domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|75700739|gb|ABA20415.1| Response regulator receiver domain protein (CheY) [Anabaena
variabilis ATCC 29413]
Length = 125
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D+ + L L K GY V + +G SA + ++ ++L D+++PE+ G+E
Sbjct: 3 HVLLVDDEVALCESLAYTLQKEGYTVTTVADGQSAIKQFHKQVPDVILLDLMLPEVSGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D+ ++ +T ++KPF+ R+L+ + +L +
Sbjct: 63 VCWRIRA-FSDVPIVMLTAKDQDIDKIWGLEAGADDYVTKPFNTRELLARIKAVLRRR 119
>gi|302866838|ref|YP_003835475.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315503253|ref|YP_004082140.1| response regulator receiver modulated diguanylate cyclase
[Micromonospora sp. L5]
gi|302569697|gb|ADL45899.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315409872|gb|ADU07989.1| response regulator receiver modulated diguanylate cyclase
[Micromonospora sp. L5]
Length = 318
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+D+ RF+ L G+EV+ +G A + + + L + D++MP +DG+EL
Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFEVLHAADGQEALEVIERQRPDLAVVDLMMPRIDGLEL 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + L V+ +T + + L KPF +LV VN L
Sbjct: 71 TRRLRADPMTSALPVIMLTAKGMTQDKVNGLSVGADDYLVKPFDTLELVARVNSTLRR 128
>gi|187777045|ref|ZP_02993518.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
15579]
gi|187773973|gb|EDU37775.1| hypothetical protein CLOSPO_00590 [Clostridium sporogenes ATCC
15579]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K RE +++ DI++P MDG+E
Sbjct: 3 KILIVEDEPSIRGFVKVNLKMNNFDVIEAETGEEGVEKAREHKPEVVILDIMLPGMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKILRQEFTNMGIIMLTAKSQDTDKVLGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|332686791|ref|YP_004456565.1| two-component response regulator [Melissococcus plutonius ATCC
35311]
gi|332370800|dbj|BAK21756.1| two-component response regulator [Melissococcus plutonius ATCC
35311]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ +D+ + + L K GYEV + +G A +KV E L+L D+++P+MDG+E+A
Sbjct: 1 MVVDDEKPISEIVKYNLVKEGYEVYTAFDGEEALEKVTEVEPDLVLLDLMLPKMDGLEVA 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + ++ ++ +T + ++KPF R+LV V L +
Sbjct: 61 REIRKTY-NMPIIMVTAKDSEIDKVLGLELGADDYVTKPFSNRELVARVKANLRRE 115
>gi|313887875|ref|ZP_07821554.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312846041|gb|EFR33423.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 227
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL ED++ +R+F+ L + GY + +G + R E +++ DI++P +D
Sbjct: 1 MKTKVLLVEDEESIRKFVKINLEREGYTIFEAGSGEEGIEIARRELPDIVVLDIMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P L ++ +T A L+KPF+ +L + +
Sbjct: 61 GFEVCKTLRGEFPSLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS-IER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|149371968|ref|ZP_01891287.1| two-component response regulator [unidentified eubacterium SCB49]
gi|149355108|gb|EDM43669.1| two-component response regulator [unidentified eubacterium SCB49]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY+V++ NG +K ++E L++ D++MP
Sbjct: 13 MKKKDIKILLVDDEPDILEIVGYNLSNEGYQVITAENGREGVEKAKKEKPHLIILDVMMP 72
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + + + + F+T ++KP + L+++V
Sbjct: 73 EMDGIEACEKIRSIPELSETVITFLTARGEDYSQVAGFDAGADDYITKPIKPKILLSKVK 132
Query: 116 RLLTI 120
LL
Sbjct: 133 ALLRR 137
>gi|28872582|ref|NP_795201.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato str. DC3000]
gi|213968546|ref|ZP_03396689.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato T1]
gi|301383518|ref|ZP_07231936.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato Max13]
gi|302062568|ref|ZP_07254109.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato K40]
gi|302130235|ref|ZP_07256225.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28855837|gb|AAO58896.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato str. DC3000]
gi|213926834|gb|EEB60386.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tomato T1]
gi|330878107|gb|EGH12256.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
gi|330967971|gb|EGH68231.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. actinidiae str. M302091]
gi|331017829|gb|EGH97885.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P
Sbjct: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR EL D+ ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|228899004|ref|ZP_04063278.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
4222]
gi|228963367|ref|ZP_04124529.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228796327|gb|EEM43773.1| hypothetical protein bthur0004_2510 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228860638|gb|EEN05024.1| hypothetical protein bthur0014_2330 [Bacillus thuringiensis IBL
4222]
Length = 237
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRYKT-NVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|297517635|ref|ZP_06936021.1| transcriptional regulator PhoB [Escherichia coli OP50]
gi|6573458|pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
gi|6573459|pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
Length = 127
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|326693642|ref|ZP_08230647.1| response regulator [Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + L L + Y+V +G +AY ++ F +L D+++P MD
Sbjct: 1 MT-KILVVDDEAAISTLLQYNLEENNYDVTVAEDGQTAYQLASQQQFDAILLDLMLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+ +T ++KPF R+++ + +L
Sbjct: 60 GMTVLKTLRQDKISTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVIARLKAVLRR 119
>gi|303239291|ref|ZP_07325819.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302593077|gb|EFL62797.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 225
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPE 58
MN KIL+A+D+ MR+ L L K G++V+ NG A D + L++ DI+MPE
Sbjct: 1 MNGMKILIADDEARMRKLLSDFLKKEGFQVLEAKNGKEALDIFNSDQSIDLIILDIMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R+ + + V+ +T + + + ++KPF LV V LL
Sbjct: 61 LDGWSVCRQIRK-SSRVPVIMLTARSDESDELFGFDLGADEYITKPFSPMILVARVQALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|291543615|emb|CBL16724.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ L L K GY V+ ++G A K ++L D+++P +DG +
Sbjct: 5 KVLIVDDDKNICDLLRLYLEKEGYSVILSHDGEEAVVKFNALKPDIVLLDVMLPGLDGWQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + + KPF ++++ + ++
Sbjct: 65 VCREIRKK-SNIPILMITAKSDTFDKVLGLELGADDYIVKPFDSKEVIARIKAVVRR 120
>gi|229107947|ref|ZP_04237575.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
gi|228675509|gb|EEL30725.1| hypothetical protein bcere0018_2410 [Bacillus cereus Rock1-15]
Length = 237
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + NG A + ++L++ D +MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDFMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|229191256|ref|ZP_04318244.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228592271|gb|EEK50102.1| Two-component response regulator [Bacillus cereus ATCC 10876]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MKRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWTVCRRIRKK-SNVPIIMLTARVDEHDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|217963397|ref|YP_002349075.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|217332667|gb|ACK38461.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Listeria monocytogenes HCC23]
gi|307572028|emb|CAR85207.1| two-component response regulator [Listeria monocytogenes L99]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G S Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|166032765|ref|ZP_02235594.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
27755]
gi|166027122|gb|EDR45879.1| hypothetical protein DORFOR_02480 [Dorea formicigenerans ATCC
27755]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ + + + +L + G +V +G A +RE ++++L D+++P++D
Sbjct: 1 MSRKVLVVDDEKLIVKGIRFSLEQDGMDVDCAYDGEEALKLIRENKYNIILLDVMLPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFQVCQQVRE-FSDVPIVMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|297582974|ref|YP_003698754.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297141431|gb|ADH98188.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++ + + K G+ V ++G + LL+ DI++PE++G++
Sbjct: 2 HVLIIEDDANIAELVSLYMEKEGWRVTIASDGEEGLSCYYDSEPDLLIVDIMLPEVNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D + ++ +TG L KPF ++L+ V LL
Sbjct: 62 ICRDVRQDDRLVPILILTGKGETDDIVRGLDAGADDYLVKPFEPKELLARVKSLLRR 118
>gi|71066375|ref|YP_265102.1| two component transcriptional regulator [Psychrobacter arcticus
273-4]
gi|71039360|gb|AAZ19668.1| two component transcriptional regulator, winged helix family
[Psychrobacter arcticus 273-4]
Length = 240
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M+++ILL EDD D+ + L Y+V G D + +E L++ D+++P+
Sbjct: 1 MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLNTKERDIDLVVLDLMLPD 60
Query: 59 MDGIELARRAT----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+++ ++ + + ++ +T ++KPF R+L+ +
Sbjct: 61 MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120
Query: 115 NRLLTI 120
++
Sbjct: 121 RAVIRR 126
>gi|152974374|ref|YP_001373891.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023126|gb|ABS20896.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + ++ F +L DI+MP MDG E
Sbjct: 4 ILLVDDEPKMLELLTLYLTPKGYNCVCATSGQEAISYIEKQNFKFVLLDIMMPNMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T ++KPFH +L+ + +L N
Sbjct: 64 CKNIRS-FSRIPILMVTARDQKIDVVHGLKIGADDYITKPFHEEELLARIEAVLRRTN 120
>gi|325281460|ref|YP_004254002.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
gi|324313269|gb|ADY33822.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAEDD ++ L + L G+E V C +G AY+ +PF + + D++MP+ DG
Sbjct: 6 KILLAEDDTNLGMLLKEYLRAKGFETVLCEDGEVAYEAFLNQPFDICILDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ +++ ++ ++F+T + +SKPF + +L+ + +L
Sbjct: 66 LAKEIRQINSEIPIIFLTAKNMKEDVLEGFKLGADDYMSKPFSMEELLLRIEAVLRR 122
>gi|294775873|ref|ZP_06741372.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294450242|gb|EFG18743.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1344
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|304315710|ref|YP_003850855.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777212|gb|ADL67771.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 227
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI + +DD ++ + L K G+ V +G +A +K++EE L++ D+++P +DG
Sbjct: 4 NKKIYIVDDDRNICEIISLYLEKEGFATVRIGDGVTALNKIKEELPLLIILDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L + + D+ ++ +T + KPF ++LV V +L
Sbjct: 64 MTLCKEVRKFT-DVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|254831076|ref|ZP_05235731.1| two-component response phosphate regulator [Listeria monocytogenes
10403S]
gi|255025953|ref|ZP_05297939.1| two-component response phosphate regulator [Listeria monocytogenes
FSL J2-003]
gi|284802939|ref|YP_003414804.1| two-component response phosphate regulator [Listeria monocytogenes
08-5578]
gi|284996080|ref|YP_003417848.1| two-component response phosphate regulator [Listeria monocytogenes
08-5923]
gi|284058501|gb|ADB69442.1| two-component response phosphate regulator [Listeria monocytogenes
08-5578]
gi|284061547|gb|ADB72486.1| two-component response phosphate regulator [Listeria monocytogenes
08-5923]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|253771766|ref|YP_003034597.1| osmolarity response regulator [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253322810|gb|ACT27412.1| two component transcriptional regulator, winged helix family
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|229044254|ref|ZP_04191927.1| Sensor histidine kinase [Bacillus cereus AH676]
gi|228725079|gb|EEL76363.1| Sensor histidine kinase [Bacillus cereus AH676]
Length = 231
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A KV L++ DI+MP+++
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|256833297|ref|YP_003162024.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
gi|256686828|gb|ACV09721.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
Length = 237
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L L + GY+VV+ G A +E L+L D+++P +
Sbjct: 1 MT-RILVVEDEESYREPLTYQLTREGYDVVAVATGTEALSAYDDEQPDLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R D+ V+ +T ++KP+ R+L+ + +L
Sbjct: 60 GTEVCRELRSRG-DVPVIMLTAKDGEIDKVVGLELGADDYVTKPYSFRELLARMRAVLRR 118
>gi|229816268|ref|ZP_04446577.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
13280]
gi|229808119|gb|EEP43912.1| hypothetical protein COLINT_03319 [Collinsella intestinalis DSM
13280]
Length = 250
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ +R + L + GY VV +G SA ++ + F L++ D+++P++ G
Sbjct: 17 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + D+ ++ +T V L KPF R+LV V L +
Sbjct: 77 RVCRAIRD-TSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAH 135
>gi|150003100|ref|YP_001297844.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931524|gb|ABR38222.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1340
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1090 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1148
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1149 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1207
>gi|126658291|ref|ZP_01729441.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
gi|126620440|gb|EAZ91159.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
Length = 225
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ ED+ + +F+ L GY + N+G S RE L+L D ++P + G
Sbjct: 3 NPRILVVEDEAKLAQFIELELKYEGYNITVVNDGLSGLTTARESNPDLILLDWMLPGISG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ +R + + ++ +T ++ + KPF+L +L+ V L
Sbjct: 63 LEICKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121
>gi|212691763|ref|ZP_03299891.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
gi|212665664|gb|EEB26236.1| hypothetical protein BACDOR_01258 [Bacteroides dorei DSM 17855]
Length = 1344
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|229916985|ref|YP_002885631.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229468414|gb|ACQ70186.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ MR + L GY + ++ SA DK+ EE L+L DI+MPE+DGI
Sbjct: 2 KILIVDDEEKMRHLIRLFLESDGYFCIEASDARSALDKI-EERPDLVLLDIMMPEVDGIS 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ +DP L V+ +T + ++KPF L+ + +L
Sbjct: 61 LCRQLKTMDPALPVVLLTARSDNETTIQGLDAGADDYVTKPFDGNVLLARIRAVLRR 117
>gi|114567196|ref|YP_754350.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338131|gb|ABI68979.1| response regulator receiver protein [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 227
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL ED+ +R L K L + G+ V +G A ++ L++ D+++P +
Sbjct: 1 MDSLILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + + + ++ +T ++KPF R+L + +L
Sbjct: 61 GWEVMKKIRQKN-NTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRR 119
>gi|187777031|ref|ZP_02993504.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
15579]
gi|187773959|gb|EDU37761.1| hypothetical protein CLOSPO_00576 [Clostridium sporogenes ATCC
15579]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ ++R + L GY + +NG A + ++ L++ DI+MP+M
Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYTTLKASNGIEALELLKTNNVHLIILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E + ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIEACMKIREEKS-MPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|171910123|ref|ZP_02925593.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 242
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+ +D ++R +++ L + G+ V + + ++ E L++ DI+MP DG+ L R
Sbjct: 12 VVDDHGEIRELVVRYLSQHGFRVTAAQDATDFRQQLEREKPDLVVLDIMMPGEDGLALCR 71
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++F+T A A L KPF+ R+L+ + +L
Sbjct: 72 HLRAET-QIPIIFLTAMAEDADRIVGLELGADDYLVKPFNPRELLARIRAVLRR 124
>gi|239825747|ref|YP_002948371.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239806040|gb|ACS23105.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + K+L+ EDD ++ + + KAGY +S ++G + E ++ DI++P+
Sbjct: 1 MKRPIKVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G E+ + D + ++ +TG + KPF +L+ V +L
Sbjct: 61 LNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|159896979|ref|YP_001543226.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159890018|gb|ABX03098.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59
M+ +IL+ +DD + + L +AGYE+ + A A ++ P SL++ D+++P+
Sbjct: 1 MS-RILIVDDDPAILSGVSTLLEQAGYEIAQAASLAQARSHLQAFNPPSLVILDLMLPDG 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG EL R+ + L ++ ++ + + L+KPF +LV V +L
Sbjct: 60 DGFELCRQIRQGGQYLPILMLSARDELQDRVEGLTVGADDYLTKPFAPAELVARVRAILR 119
Query: 120 I 120
+
Sbjct: 120 L 120
>gi|78485313|ref|YP_391238.1| two component transcriptional regulator [Thiomicrospira crunogena
XCL-2]
gi|78363599|gb|ABB41564.1| two component transcriptional regulator, winged helix family
[Thiomicrospira crunogena XCL-2]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ IL+ ED+ + + + L +G++ V +NG+ V+ P L+L DI++P DG
Sbjct: 3 SETILIVEDEIKIANIVQEYLQDSGFKTVCIDNGSDVLSWVQNHPVDLILLDIMLPGKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ + + + ++ +T + KPF R+LV V LL
Sbjct: 63 LQVCKEVRTI-SQVPIIMLTAKVEEIDRILGLELGADDYICKPFSPRELVARVKALLRRS 121
Query: 122 N 122
+
Sbjct: 122 S 122
>gi|120596940|ref|YP_961514.1| osmolarity response regulator [Shewanella sp. W3-18-1]
gi|146294927|ref|YP_001185351.1| osmolarity response regulator [Shewanella putrefaciens CN-32]
gi|120557033|gb|ABM22960.1| two component transcriptional regulator, winged helix family
[Shewanella sp. W3-18-1]
gi|145566617|gb|ABP77552.1| two component transcriptional regulator, winged helix family
[Shewanella putrefaciens CN-32]
gi|319424531|gb|ADV52605.1| two component transcriptional regulator for porins, OmpR
[Shewanella putrefaciens 200]
Length = 241
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + GY+V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRALLERYLMEQGYQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQGSLIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|237708643|ref|ZP_04539124.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229457343|gb|EEO63064.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1344
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQARIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|331083978|ref|ZP_08333085.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
gi|330402340|gb|EGG81910.1| regulatory protein vanR [Lachnospiraceae bacterium 6_1_63FAA]
Length = 231
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L + V + A++ + +E L L DI+MP++
Sbjct: 1 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ E + ++ +T ++KPF ++V V L
Sbjct: 61 GLELCKKIRERY-NYPIIMLTAKGTEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRR 119
>gi|210621261|ref|ZP_03292567.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
gi|210154872|gb|EEA85878.1| hypothetical protein CLOHIR_00510 [Clostridium hiranonis DSM 13275]
Length = 222
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD ++ + + L GY V + N+G K +E + L++ DI+MP +D
Sbjct: 1 MNSSILVIEDDASIQDLITEFLSAEGYNVDAANDGIEGIQKFKENNYDLIILDIMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++F+T + + ++KPF LV V +L
Sbjct: 61 GYGVCKMIRK-TSSVPIIFLTALNQESDQLKGFEIECDDYITKPFSFNLLVKRVEAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|239827570|ref|YP_002950194.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239807863|gb|ACS24928.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 240
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ KIL+ +D++ +RR L L + Y + +NG A +K E + ++L D+++
Sbjct: 1 MDKDQQVKILVVDDEERIRRLLKMYLERENYIIDEADNGDDALEKALENDYDVILLDLML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DGIE+ + E ++ +T + + KPF R++V V
Sbjct: 61 PGRDGIEVCKGIREK-KATPIIMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVKA 119
Query: 117 LLTI 120
LL
Sbjct: 120 LLRR 123
>gi|126702211|gb|ABO26809.1| CpxR [Legionella feeleii]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ L++ L G+ VV ++G SA K + F ++ D+++P+++
Sbjct: 1 MNNNILIVDDDTELTDLLVQYLEPEGFHVVCVHDGESAVKKALNQAFDAIILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKAIREHL-QTPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|119468896|ref|ZP_01611921.1| phosphate regulon transcriptional regulatory protein phoB
[Alteromonadales bacterium TW-7]
gi|119447548|gb|EAW28815.1| phosphate regulon transcriptional regulatory protein phoB
[Alteromonadales bacterium TW-7]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ +R L+ L + G++ + + SA + E ++L D ++P
Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A++ E + ++ +T ++KPF ++L+ + ++
Sbjct: 61 GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|312128528|ref|YP_003993402.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311778547|gb|ADQ08033.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 217
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R+ + L K G+EV ++G A +K + +S+++ D+++P+ DG
Sbjct: 2 KILLVEDEEKLRKVIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D D V+ +T + KP +++V V +L
Sbjct: 62 VLREIRKKD-DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117
>gi|309775090|ref|ZP_07670103.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308917204|gb|EFP62931.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++R + L GYEV +G A K ++ L++ D++MP+MD
Sbjct: 1 MGSKILIVDDNQEIREVVSVLLENEGYEVQEAEDGEIAIAKAKDM--DLIILDVMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E+ + ++F+T + L+KPF +L+ V LL
Sbjct: 59 GFKACRQIREV-SNAPILFLTAKTMDQDKALGFSSGGDDYLAKPFSYNELIARVKALLRR 117
>gi|148379888|ref|YP_001254429.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|148289372|emb|CAL83468.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQVCQKIRDKVS-CPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|133757060|ref|YP_001096296.1| hypothetical protein pLEW6932_p27 [Staphylococcus sp. 693-2]
gi|110084108|gb|ABG49262.1| hypothetical protein [Staphylococcus sp. 693-2]
gi|281336140|gb|ADA62689.1| DNA-binding response regulator [Staphylococcus sp. 693-7]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ ++R L K L + Y+V NG A + ++LL+ D++MP++DGIE
Sbjct: 5 RILIADDEKEIRNLLKKYLERELYKVDVAVNGEEALRLFDKNQYNLLILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T ++KPF + +++ V L+
Sbjct: 65 VCRRLRNKT-NIPILMLTAKDQEVDKVLGLGIGADDYITKPFSINEVIARVKSLMRR 120
>gi|90020314|ref|YP_526141.1| response regulator receiver domain-containing protein [Saccharophagus
degradans 2-40]
gi|89949914|gb|ABD79929.1| GGDEF domain [Saccharophagus degradans 2-40]
Length = 1526
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
IL+ +D+ R+ L L Y V +G A VR P L+L DI+MP+M
Sbjct: 1143 TYHILIVDDEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMS 1202
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E ++ + +L ++ +T + V+ ++KP +L+ V+ L
Sbjct: 1203 GYEACKQLRQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHL 1262
Query: 119 TIKN 122
+++
Sbjct: 1263 QLRD 1266
>gi|325661912|ref|ZP_08150532.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331085778|ref|ZP_08334861.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325471764|gb|EGC74982.1| hypothetical protein HMPREF0490_01270 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330406701|gb|EGG86206.1| hypothetical protein HMPREF0987_01164 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + + + +L + G EV + +G A + F L+L D+++P++
Sbjct: 1 MGNKILVVDDEKLIVKGIRFSLEQDGMEVTAAYDGEEALALAKSGEFDLILLDVMLPKLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQQVRE-FSDVPIIMLTAKGDDIDKIMGLEYGADDYVTKPFNILEVKARIKAIIRR 119
>gi|302671163|ref|YP_003831123.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302395636|gb|ADL34541.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K L+ +D+ + + + +L + V +G A DK R + ++L D+++P M
Sbjct: 1 MSKKALVVDDEKVIVKGIKFSLEQDDIIVDCAYDGQEALDKARANEYDIILLDVMLPIMT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQQIRE-FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|241888630|ref|ZP_04775937.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
gi|241864653|gb|EER69028.1| response regulator ArlR [Gemella haemolysans ATCC 10379]
Length = 223
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R + K L + Y V SC +G A D V + L++TDI+MP +DG E
Sbjct: 2 KILVVEDERDLNRIITKHLKRNNYSVDSCFDGEEALDFVGYSDYDLIITDIMMPNVDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T + + KPF +L + L+
Sbjct: 62 FIKRLRESKNNTPVIMLTAKDTLEDKIVGLDSGADDYIVKPFEFDELFARIRVLMRR 118
>gi|226315263|ref|YP_002775159.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226098213|dbj|BAH46655.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD ++ + L GYE+ +G A +K+ ++ L++ D++MP +D
Sbjct: 1 MSVRILIVDDDKEIVELMAIYLSNEGYEIEKAFDGLEAMEKLEQKSIDLVILDVMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + + + ++ + ++KPF+ +++ V LL
Sbjct: 61 GLEVTKRIRK-NSTIPILMASAKTNDMDKILGLMTGADDYVAKPFNPLEVIARVKSLLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|119945946|ref|YP_943626.1| response regulator GltR [Psychromonas ingrahamii 37]
gi|119864550|gb|ABM04027.1| response regulator GltR [Psychromonas ingrahamii 37]
Length = 241
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+++L+ +DD +R L + L K ++V++ +G + L++ DI++P DG
Sbjct: 4 NKQVLVIDDDQAIRELLAEYLSKNNFDVITAEDGLEMDKQRLIHQPDLIILDIMLPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + + ++ +T + ++KPF R+L+ + LL
Sbjct: 64 FILCQRIRQ-TSHVPIIMLTANSDEMDRVLGLEIGADDYIAKPFSPRELLARIKALLRR 121
>gi|329296470|ref|ZP_08253806.1| DNA-binding transcriptional regulator CpxR [Plautia stali symbiont]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EV+ ++G A + + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMDGFEVIVASDGEQALNLL-DNTVDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|301645844|ref|ZP_07245759.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
gi|301075922|gb|EFK90728.1| transcriptional regulatory protein OmpR [Escherichia coli MS 146-1]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|26991996|ref|NP_747421.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|24987128|gb|AAN70885.1|AE016732_10 DNA-binding response regulator PhoB [Pseudomonas putida KT2440]
Length = 242
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GI
Sbjct: 17 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 76
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 77 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 136
>gi|332706171|ref|ZP_08426240.1| two component transcriptional regulator, LuxR family [Lyngbya
majuscula 3L]
gi|332355008|gb|EGJ34479.1| two component transcriptional regulator, LuxR family [Lyngbya
majuscula 3L]
Length = 249
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+LL +D+ +R + + L + G+ V +N A+ +++ L+++DI+MP++D
Sbjct: 22 MSAKLLLVDDEPGVREAVKEYLAEFGFTVQVASNANDAWQMLQQNTPELVISDIMMPKVD 81
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ + L V+F+T + L KPF +LV V LL
Sbjct: 82 GYQFLQQLRDDPRFKALPVVFLTARGMTSDRIQGYQAGCDAYLPKPFDPDELVAIVQNLL 141
Query: 119 TIK 121
+
Sbjct: 142 ERR 144
>gi|323706233|ref|ZP_08117800.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534397|gb|EGB24181.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 227
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KI + +DD ++ + L K G+ V ++G +A +K++EE L++ D+++P +DG
Sbjct: 4 NKKIYIVDDDRNICEIISLYLEKEGFATVKISDGITALNKIKEELPLLIILDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L + + ++ ++ +T + KPF ++LV V +L
Sbjct: 64 MTLCKEVRKFT-NVPIIMLTAKGDTFDKVLGLEIGADDYIVKPFDGKELVARVKAVLRR 121
>gi|309798826|ref|ZP_07693089.1| response regulator SaeR [Streptococcus infantis SK1302]
gi|308117552|gb|EFO54965.1| response regulator SaeR [Streptococcus infantis SK1302]
Length = 205
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V ++G A + + +P L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRYLVQAGYQVFVAHDGVEALEIFKRKPIDLIITDIMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L PD +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYQSPDQPFLFITAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVHNILHR 120
>gi|226225049|ref|YP_002759156.1| two-component response phosphate regulator [Listeria monocytogenes
Clip81459]
gi|254993857|ref|ZP_05276047.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J2-064]
gi|255520613|ref|ZP_05387850.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
J1-175]
gi|225877511|emb|CAS06225.1| two-component response phosphate regulator [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328465109|gb|EGF36377.1| DNA-binding response regulator PhoP [Listeria monocytogenes 1816]
gi|328471114|gb|EGF42018.1| DNA-binding response regulator PhoP [Listeria monocytogenes 220]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|119476351|ref|ZP_01616702.1| two-component response regulator PhoB [marine gamma proteobacterium
HTCC2143]
gi|119450215|gb|EAW31450.1| two-component response regulator PhoB [marine gamma proteobacterium
HTCC2143]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + +L AG+ + AY + + L+L D ++P GI
Sbjct: 4 KTILIVDDEAPIREMIRMSLDMAGFNCREAADTREAYRVIADSKPDLVLLDWMLPGGSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR EL DL V+ +T ++KPF R++++ + LL
Sbjct: 64 ELLRRLRKEELTADLPVIMLTAKTDEDNKIQGLDVGADDYITKPFAPREMLSRIKALLRR 123
>gi|57234165|ref|YP_181773.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
gi|57224613|gb|AAW39670.1| DNA-binding response regulator [Dehalococcoides ethenogenes 195]
Length = 227
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D++ + L L + G++V NG A K REE L++ D+++PE+
Sbjct: 1 MSKKILIADDENKIAEILKAYLEREGFKVSVTYNGKEALAKFREENPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + ++ +T + ++KPF ++LV L
Sbjct: 61 GWDVCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARAKVQLRR 119
>gi|237784979|ref|YP_002905684.1| two-component system response regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237757891|gb|ACR17141.1| two-component system, response regulator [Corynebacterium
kroppenstedtii DSM 44385]
Length = 234
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + ++G A D R + D++MP MDG
Sbjct: 9 RVLVVDDEANIVELLKVSLKFQGFEVATASDGGEALDIARSFHPDAFILDVMMPRMDGFT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+F+T AV ++KPF L ++V + +L
Sbjct: 69 LLSKLRADGHDAPVLFLTAKDAVDDRIHGLTIGADDYVTKPFSLEEVVTRLKVILRR 125
>gi|117927299|ref|YP_871850.1| two component transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117647762|gb|ABK51864.1| two component transcriptional regulator, winged helix family
[Acidothermus cellulolyticus 11B]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G+ V + +G + + L+L D+++P +
Sbjct: 1 MVTQLLVIEDEESFSETLAYMLRREGFVVHTAGSGTEGLELFERQGADLVLLDLMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ RR E ++ ++ +T + ++KPF R+LV + +L
Sbjct: 61 GTDVCRRLRER-SNVPIIMLTARDSEVDKVVGLELGADDYVTKPFSSRELVARIRAVLRR 119
Query: 121 KN 122
++
Sbjct: 120 RD 121
>gi|30261572|ref|NP_843949.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
gi|47526771|ref|YP_018120.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
Ancestor']
gi|47569149|ref|ZP_00239837.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
gi|49184403|ref|YP_027655.1| DNA-binding response regulator ResD [Bacillus anthracis str.
Sterne]
gi|49477248|ref|YP_035693.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143871|ref|YP_082957.1| response regulator [Bacillus cereus E33L]
gi|165872643|ref|ZP_02217273.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
gi|167634461|ref|ZP_02392782.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
gi|167641616|ref|ZP_02399862.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
gi|170706385|ref|ZP_02896846.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
gi|177651599|ref|ZP_02934388.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
gi|190568062|ref|ZP_03020972.1| DNA-binding response regulator ResD [Bacillus anthracis
Tsiankovskii-I]
gi|196038975|ref|ZP_03106282.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
gi|206978271|ref|ZP_03239149.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
gi|222095206|ref|YP_002529266.1| response regulator [Bacillus cereus Q1]
gi|225863439|ref|YP_002748817.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
gi|227815677|ref|YP_002815686.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
684]
gi|228914150|ref|ZP_04077768.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228926607|ref|ZP_04089676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228932862|ref|ZP_04095729.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228945176|ref|ZP_04107532.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228984655|ref|ZP_04144828.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229029255|ref|ZP_04185346.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
gi|229090537|ref|ZP_04221773.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
gi|229121118|ref|ZP_04250355.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
gi|229172214|ref|ZP_04299778.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
gi|229183771|ref|ZP_04310988.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
gi|229195776|ref|ZP_04322536.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
gi|301053115|ref|YP_003791326.1| response regulator [Bacillus anthracis CI]
gi|30255426|gb|AAP25435.1| DNA-binding response regulator ResD [Bacillus anthracis str. Ames]
gi|47501919|gb|AAT30595.1| DNA-binding response regulator ResD [Bacillus anthracis str. 'Ames
Ancestor']
gi|47554220|gb|EAL12583.1| transcriptional regulatory protein resD [Bacillus cereus G9241]
gi|49178330|gb|AAT53706.1| DNA-binding response regulator ResD [Bacillus anthracis str.
Sterne]
gi|49328804|gb|AAT59450.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51977340|gb|AAU18890.1| response regulator [Bacillus cereus E33L]
gi|164711587|gb|EDR17134.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0488]
gi|167510409|gb|EDR85809.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0193]
gi|167530349|gb|EDR93075.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0442]
gi|170128919|gb|EDS97785.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0389]
gi|172082877|gb|EDT67940.1| DNA-binding response regulator ResD [Bacillus anthracis str. A0174]
gi|190560796|gb|EDV14771.1| DNA-binding response regulator ResD [Bacillus anthracis
Tsiankovskii-I]
gi|196030120|gb|EDX68720.1| DNA-binding response regulator ResD [Bacillus cereus NVH0597-99]
gi|206743520|gb|EDZ54949.1| DNA-binding response regulator ResD [Bacillus cereus H3081.97]
gi|221239264|gb|ACM11974.1| response regulator [Bacillus cereus Q1]
gi|225787803|gb|ACO28020.1| DNA-binding response regulator ResD [Bacillus cereus 03BB102]
gi|227004496|gb|ACP14239.1| DNA-binding response regulator ResD [Bacillus anthracis str. CDC
684]
gi|228587673|gb|EEK45731.1| Transcriptional regulatory protein srrA [Bacillus cereus m1293]
gi|228599620|gb|EEK57223.1| Transcriptional regulatory protein srrA [Bacillus cereus BGSC 6E1]
gi|228611202|gb|EEK68460.1| Transcriptional regulatory protein srrA [Bacillus cereus MM3]
gi|228662237|gb|EEL17840.1| Transcriptional regulatory protein srrA [Bacillus cereus 95/8201]
gi|228692804|gb|EEL46527.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-42]
gi|228732068|gb|EEL82959.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1271]
gi|228775049|gb|EEM23442.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228814411|gb|EEM60676.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228826783|gb|EEM72550.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228832983|gb|EEM78551.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228845483|gb|EEM90516.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|300375284|gb|ADK04188.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 238
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|329947323|ref|ZP_08294588.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Actinomyces sp. oral taxon 170 str. F0386]
gi|328525481|gb|EGF52527.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Actinomyces sp. oral taxon 170 str. F0386]
Length = 249
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG
Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ARR E D ++F+T +A ++KPF L +++ + +L +
Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134
>gi|328954650|ref|YP_004371983.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
gi|328454974|gb|AEB06168.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
Length = 242
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ +R + L + GY VV +G SA ++ + F L++ D+++P++ G
Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + D+ ++ +T V + KPF R+LV V L +
Sbjct: 66 RVCRAIRD-TSDVPIIMLTAKGEVEDRIIGLELGADDYIIKPFSPRELVARVRALFRRTH 124
>gi|291533797|emb|CBL06910.1| two component transcriptional regulator, winged helix family
[Megamonas hypermegale ART12/1]
Length = 230
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + L K GY+ V +G A D + E ++L D++MP++DG E
Sbjct: 2 KVLIVDDNKQIISILEAYAKKEGYQTVIAVDGQEALDVFQRERPDIILLDVMMPKIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + KPF +++ + +L
Sbjct: 62 VCRVIRK-TSNVPIIMITARGEDFEKIMGLEIGADDYIVKPFSPGEIMARIKAILRR 117
>gi|119483445|ref|ZP_01618859.1| adenylate cyclase [Lyngbya sp. PCC 8106]
gi|119458212|gb|EAW39334.1| adenylate cyclase [Lyngbya sp. PCC 8106]
Length = 1361
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD + L+ L Y V ++G A + + L+L D++MP M G
Sbjct: 891 KILIVDDDPINLQVLVNYLCLQNYAVTQASSGIEAMEILEAGYIPDLILLDVMMPRMTGY 950
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E P L +M +T V+ LSKP + +L+ + + I
Sbjct: 951 EVTRRIRETWPPHQLPIMMLTAKNQVSDLVAGLEVGANDYLSKPLNKDELLARIKTHIRI 1010
Query: 121 K 121
K
Sbjct: 1011 K 1011
>gi|332664922|ref|YP_004447710.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
gi|332333736|gb|AEE50837.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
Length = 1603
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
IL+ +D+ ++ L L Y++ S NG A + F L+L D++MP M G
Sbjct: 1192 HILVVDDEPINQQVLKSHLSALKYDITSALNGEDALKALSNGKHFDLVLLDVMMPRMSGY 1251
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ IT V ++KPF + + V L +
Sbjct: 1252 EVCEQIRKKFLPSELPVIMITAKNQVQDLVHGLNTGANDYITKPFTKDEFLARVKTHLNL 1311
>gi|330813170|ref|YP_004357409.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Candidatus Pelagibacter sp. IMCC9063]
gi|327486265|gb|AEA80670.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Candidatus Pelagibacter sp. IMCC9063]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI + ED+ + + L K Y+V NNG ++++ L+L D ++P++
Sbjct: 1 MKAKIFIVEDEPSIATLVKYNLEKENYKVFISNNGEEGLKEIKKIEPDLILLDWMLPDLS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R + + ++ +T L KPF +LV +N LL
Sbjct: 61 GIEICRSLKKDKKFKFIPIIMLTAKGQEEDKVLGLNTGADDYLVKPFSHSELVARINALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|310778503|ref|YP_003966836.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
gi|309747826|gb|ADO82488.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
Length = 219
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILLAEDD +RR L K GY V+ +G A + L++ DI+MP++D
Sbjct: 1 MDKKILLAEDDWKLRRIASDFLKKEGYLVIEAEDGEQAIEFFFNNKIDLVILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R ++ ++ +T K + ++KP L+ L+ +V LL
Sbjct: 61 GWDVCREIRSERKNVPIIMLTAKGDEDDILKGYKLKTDEYVTKPVSLKILMAKVKALLRR 120
Query: 121 KN 122
N
Sbjct: 121 NN 122
>gi|49081910|gb|AAT50355.1| PA4381 [synthetic construct]
Length = 228
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ L L GY V +G S E + L++ D+++P +DG
Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119
>gi|302874199|ref|YP_003842832.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307689539|ref|ZP_07631985.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302577056|gb|ADL51068.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ + RF+ L GYEV ++G + +E + L+L DI++P M+
Sbjct: 1 MKGKILVIEDEVKIARFIELELNYEGYEVEKVHDGRDGFKMAKENDYDLILLDIMLPSMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR E D+ V+ +T ++KPF + +L+ + L
Sbjct: 61 GIEILRRLRE-SSDIPVIMLTAKDETMDKVMGLDMGADDYVTKPFEIEELLARIRVALKR 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|167766653|ref|ZP_02438706.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
gi|317499486|ref|ZP_07957752.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167711776|gb|EDS22355.1| hypothetical protein CLOSS21_01159 [Clostridium sp. SS2/1]
gi|291558666|emb|CBL37466.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
gi|316893260|gb|EFV15476.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + + +L + +V +G A +K +E + ++L D+++P + G
Sbjct: 2 RKVLVVDDEKLIVKGIKFSLEQDEMQVDCAYDGEEALEKAKENQYDIILLDVMLPGLTGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + ++ +T ++KPF++ ++ + +L
Sbjct: 62 EVCQAIRE-FSSVPIIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARIKAILRR 118
>gi|228945616|ref|ZP_04107966.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228814134|gb|EEM60405.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|210634653|ref|ZP_03298205.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
gi|210158725|gb|EEA89696.1| hypothetical protein COLSTE_02129 [Collinsella stercoris DSM 13279]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ +R + L + GY VV +G SA ++ + F L++ D+++P++ G
Sbjct: 6 RKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAVEEFEKHQFDLIVLDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + D+ ++ +T V L KPF R+LV V L +
Sbjct: 66 RVCRAIRD-TSDVPIIMLTAKGEVEDRIIGLELGADDYLIKPFSPRELVARVRALFRRTH 124
>gi|325674850|ref|ZP_08154537.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
gi|325554436|gb|EGD24111.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length = 232
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ ++L+ +D+ + L +L G+EV + NGA DK R L+ D++M
Sbjct: 1 MSETPQVRVLIVDDEPSLVELLSVSLRFQGFEVETGTNGAEGLDKARAFRPDALILDVMM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG + RR D V+F+T AV ++KPF L ++V +
Sbjct: 61 PGMDGFGMLRRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRV 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|291446254|ref|ZP_06585644.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291349201|gb|EFE76105.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 283
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA+A R+ ++ D+++P+MDG+
Sbjct: 57 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 116
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T AV ++KPF L ++V + L+
Sbjct: 117 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 173
>gi|125718372|ref|YP_001035505.1| two-component response transcriptional regulator [Streptococcus
sanguinis SK36]
gi|323351211|ref|ZP_08086867.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
gi|125498289|gb|ABN44955.1| Two-component response transcriptional regulator (CheY-like
receiver and winged-helix DNA-binding domains), putative
[Streptococcus sanguinis SK36]
gi|322122435|gb|EFX94146.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
gi|324991492|gb|EGC23425.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
gi|324993852|gb|EGC25771.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
gi|324994827|gb|EGC26740.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
gi|325687268|gb|EGD29290.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
gi|325690802|gb|EGD32803.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
gi|325694846|gb|EGD36751.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
gi|325696129|gb|EGD38020.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
gi|327461010|gb|EGF07343.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
gi|327463116|gb|EGF09437.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
gi|327470647|gb|EGF16103.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
gi|327474727|gb|EGF20132.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
gi|327490284|gb|EGF22072.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
gi|328946751|gb|EGG40889.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
gi|332358683|gb|EGJ36506.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
gi|332358954|gb|EGJ36775.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
gi|332362447|gb|EGJ40247.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
gi|332367141|gb|EGJ44877.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
Length = 233
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEV++ +G A + E +L+ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALEMFEAEQPDILILDLMLPEVDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|123443385|ref|YP_001007359.1| phosphate regulon transcriptional regulatory protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|122090346|emb|CAL13214.1| phosphate regulon transcriptional regulatory protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|222053517|ref|YP_002535879.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
gi|221562806|gb|ACM18778.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + YEVV+ +G E+ F LL+ D ++P+MDG+
Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVVTAGDGEEGLKMAMEKNFDLLILDWMLPKMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T +V + L+KPF +L+ V LL
Sbjct: 62 VLKELKSQKNTTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRR 118
>gi|331698780|ref|YP_004335019.1| winged helix family two component transcriptional regulator
[Pseudonocardia dioxanivorans CB1190]
gi|326953469|gb|AEA27166.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length = 247
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + +GASA RE ++ D+++P++DG+E
Sbjct: 21 RVLVVDDEATLSDLLGMALRYEGWDVRTEADGASAVRAAREFRPDAVVLDVMLPDLDGLE 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR PD+ V+F+T AV ++KPF L +LV + LL
Sbjct: 81 VLRRMRADTPDVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRGLLRR 137
>gi|226313781|ref|YP_002773675.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226096729|dbj|BAH45171.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I++ +DD +R + L G+ +V +G A DK+ L++ DI+MP MD
Sbjct: 1 MT-TIMVVDDDPHIRELVSVFLRNEGFTIVEAVDGQEALDKLESVAAQLVILDIMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ E D ++ +T + L KPF ++LV V LL
Sbjct: 60 GWELCRKLREHY-DFPLLMLTAKGETSQKIKGFELGTDDYLVKPFDPQELVVRVKALLKR 118
>gi|225377290|ref|ZP_03754511.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
16841]
gi|225210821|gb|EEG93175.1| hypothetical protein ROSEINA2194_02937 [Roseburia inulinivorans DSM
16841]
Length = 223
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ EDD D++ L L +AGYEV N+G A E + L++ DI++P++DG
Sbjct: 2 QRILVVEDDFDIQELLQNFLQEAGYEVAVANDGVEALSLFAGERYDLIVLDIMLPKIDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ ++ +T + + ++KPF + L+ ++ +L N
Sbjct: 62 GVCELIRKQ-SDVPIIMLTALSGEEDQIKGLDLQVDDYITKPFSMPVLLRKIAAVLRRSN 120
>gi|218438325|ref|YP_002376654.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218171053|gb|ACK69786.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L K GY + +NG + + LL+ D ++P + G+E
Sbjct: 2 RILLVDDEVELTEPLRQVLSKEGYTIDVADNGKTGLQLALNHGYDLLILDWMLPYLSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQQLRSQGKTTPVLFLTAKDTLDDRVMGLDVGADDYLIKPFQLRELLARVRALLRR 118
>gi|317494410|ref|ZP_07952824.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917660|gb|EFV39005.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|25027325|ref|NP_737379.1| putative sensor kinase [Corynebacterium efficiens YS-314]
gi|259506537|ref|ZP_05749439.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
gi|23492606|dbj|BAC17579.1| putative sensor kinase [Corynebacterium efficiens YS-314]
gi|259165957|gb|EEW50511.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length = 226
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+
Sbjct: 1 MPQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETAEREQPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + D + ++ +T ++KPF ++LV + L
Sbjct: 61 GIDICRAIRQ-DSAVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLRR 119
>gi|108801553|ref|YP_641750.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119870707|ref|YP_940659.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126437538|ref|YP_001073229.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|108771972|gb|ABG10694.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119696796|gb|ABL93869.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126237338|gb|ABO00739.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+EV + ++GASA DK R+ ++ D++MP MDG
Sbjct: 14 RVLVVDDEANIVELLSVSLKFQGFEVHTASDGASALDKARDVRPDAVILDVMMPGMDGFG 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D +F+T ++ ++KPF L ++V + +L
Sbjct: 74 LLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 130
>gi|37524232|ref|NP_927576.1| osmolarity response regulator [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36783655|emb|CAE12507.1| Two-component response regulator [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 239
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S N + E SL++ D+++P DG+
Sbjct: 6 KILVVDDDMRLRTLLERYLTEQGFQVRSAANAEQMDRLLTRESVSLIVLDLMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T + KPF+ R+L+ + +L +
Sbjct: 66 VCQRLRNQSNPVPIIMVTARGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|283798568|ref|ZP_06347721.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
gi|291073696|gb|EFE11060.1| DNA-binding response regulator SrrA [Clostridium sp. M62/1]
gi|295092881|emb|CBK78988.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 225
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G++VV +G A D ++ +L+L D++MP+MDG
Sbjct: 5 KILVVDDEPRMRKLVKDFLTVKGFQVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + + ++ +T + +SKPF + LV V +L +
Sbjct: 65 EVLKTIRK-YSQVPILMLTARGEEQDELQGFKLGVDEYISKPFSPKILVARVEAILRRSS 123
>gi|163839443|ref|YP_001623848.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
gi|162952919|gb|ABY22434.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
Length = 241
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL ED++ + + + L KAGY+V N+G +A L++ D ++P +DG
Sbjct: 14 NRKILLVEDEELIAQVVRDYLVKAGYQVELANDGFTALHLASASNPDLIILDRMLPGLDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + + ++ +T ++KP R+LV VN +L
Sbjct: 74 AEVCRRIRQTMS-MPIILLTALGTEDDRILGLEMGADDYVTKPVSPRELVLRVNSVLRR 131
>gi|16801706|ref|NP_471974.1| two-component response phosphate regulator [Listeria innocua
Clip11262]
gi|16415181|emb|CAC97871.1| two-component response phosphate regulator [Listeria innocua
Clip11262]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVGVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|291165916|gb|EFE27963.1| DNA-binding response regulator YycF [Filifactor alocis ATCC 35896]
Length = 230
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L + GY++++ +G Y K +E L+L DI++P M+
Sbjct: 1 MKNTILIIEDEKPISDIVKFNLKREGYDIITAFDGLDGYQKGIQENVDLILLDIMLPSMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R E + ++ +T ++KPF LR+L+ V +
Sbjct: 61 GFDVCRHIREK-SSVPIIMVTAKEEEVDKILGLELGADDYITKPFSLRELIARVKANIRR 119
>gi|251790686|ref|YP_003005407.1| two component transcriptional regulator PhoB, winged helix family
[Dickeya zeae Ech1591]
gi|307129884|ref|YP_003881900.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Dickeya dadantii 3937]
gi|247539307|gb|ACT07928.1| two component transcriptional regulator PhoB, winged helix family
[Dickeya zeae Ech1591]
gi|306527413|gb|ADM97343.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Dickeya dadantii 3937]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDSAVTRLAEPYPELVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|237744968|ref|ZP_04575449.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
gi|256028433|ref|ZP_05442267.1| two-component response regulator czcR [Fusobacterium sp. D11]
gi|289766356|ref|ZP_06525734.1| two-component system response regulator czcR [Fusobacterium sp.
D11]
gi|229432197|gb|EEO42409.1| two-component response regulator czcR [Fusobacterium sp. 7_1]
gi|289717911|gb|EFD81923.1| two-component system response regulator czcR [Fusobacterium sp.
D11]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L K + V S +G A + + + L++ DI++P+M+G E
Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVYDGEEALEYLDYGNYDLIILDIMLPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T A+ L KPF +L+ + ++ K
Sbjct: 62 VVKNLRTNKNETPVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIVRRK 119
>gi|24216802|ref|NP_714283.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
gi|45659090|ref|YP_003176.1| response regulator [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
gi|24198167|gb|AAN51301.1| response regulator [Leptospira interrogans serovar Lai str. 56601]
gi|45602336|gb|AAS71813.1| response regulator [Leptospira interrogans serovar Copenhageni str.
Fiocruz L1-130]
Length = 233
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QK+L+ +D++D+ + L + GY+V +C NG K+ + L++ D+++P + G+
Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLIILDLMLPGIGGM 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L ++ E + ++ +T + + KPF R+L+ V +L
Sbjct: 70 DLCKKIKEKYS-MPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRR 126
>gi|269838215|ref|YP_003320443.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269787478|gb|ACZ39621.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 236
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED D+ + + + L AGY VV +G +A D + E L++ D ++P++DG+E
Sbjct: 3 TILLVEDARDLAQVIERELTAAGYRVVLAYDGRTALDLLAREQPDLVVLDWMLPQVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + P V+ +T + L+KPF +R+L+ V LL
Sbjct: 63 VLRRLRQESP-TPVLMLTARSEEVDRVVGLELGADDYLTKPFSMRELLARVRALLRR 118
>gi|209546661|ref|YP_002278579.1| two component winged helix family transcriptional regulator
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537905|gb|ACI57839.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 234
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + AL +AG + NG A R L++ DI MP+MD
Sbjct: 1 MAPRILVVDDEPHIRDVICFALERAGLISTAVRNGTEAMAAFRRGKIDLIILDIGMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + L ++F++ ++KPF R+LV V +L
Sbjct: 61 GLDVCRQIRK-TSGLPILFLSARDEEIDKVLGLEIGGDDYVTKPFSPRELVARVKAILKR 119
>gi|218895392|ref|YP_002443803.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218543363|gb|ACK95757.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 237
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+DD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILLADDDKEIRNLLKIYLERELYMVDTAINGEEALHLFNQNNYNLVILDLMMPKIDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCKKLRYKT-NVPILMLTAKDHEIDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|62182004|ref|YP_218421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|238896872|ref|YP_002921617.1| osmolarity response regulator [Klebsiella pneumoniae NTUH-K2044]
gi|254038572|ref|ZP_04872628.1| osmolarity response regulator [Escherichia sp. 1_1_43]
gi|293416807|ref|ZP_06659444.1| ompR [Escherichia coli B185]
gi|293453711|ref|ZP_06664130.1| transcriptional regulatory protein ompR [Escherichia coli B088]
gi|62129637|gb|AAX67340.1| Transcriptional regulatory protein ompR [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|226839078|gb|EEH71101.1| osmolarity response regulator [Escherichia sp. 1_1_43]
gi|238549199|dbj|BAH65550.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|291321837|gb|EFE61268.1| transcriptional regulatory protein ompR [Escherichia coli B088]
gi|291431383|gb|EFF04368.1| ompR [Escherichia coli B185]
gi|322716492|gb|EFZ08063.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
Length = 244
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 9 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 69 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 128
>gi|327440162|dbj|BAK16527.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 223
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RFL L +E V +G + + E F +L D+++P+++
Sbjct: 1 MKKKILIIEDEKNIARFLELELKHEQFETVVAYDGRTGLELAESEQFDCILLDVMLPQLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + ++ ++ IT V + KPF + +L+ + +L
Sbjct: 61 GIEVCRRIRK-TSNVPILLITARDEVMDRVSGLDAGADDYVVKPFAIEELLARIRSILRR 119
>gi|300932570|ref|ZP_07147826.1| two-component system response regulator TcsR5 [Corynebacterium
resistens DSM 45100]
Length = 231
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+DD +R L ++L GY VV ++GA A + + E L + D++MP DG+E
Sbjct: 2 KILVADDDQAVRESLRRSLIFNGYTVVLASDGAEALEIIASERPDLAILDVMMPRRDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ +T AV+ L KPF L +L+ L
Sbjct: 62 VCRELRSHGDDIPILLLTARDAVSERVAGLDAGADDYLPKPFALEELLARTRSLFRR 118
>gi|218294843|ref|ZP_03495697.1| two component transcriptional regulator, winged helix family
[Thermus aquaticus Y51MC23]
gi|218244751|gb|EED11275.1| two component transcriptional regulator, winged helix family
[Thermus aquaticus Y51MC23]
Length = 224
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY ++G + K RE +L++ D+++P MDGIE+
Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVNPNLVILDLMLPVMDGIEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ ++ +T + L KPF + +L+ V L
Sbjct: 66 ARRIRK-TSNVPILILTAKDRIEDKVQGLDAGADDYLVKPFSIEELLARVRAHLRR 120
>gi|66048256|ref|YP_238097.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|71734112|ref|YP_277191.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|257485715|ref|ZP_05639756.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289628101|ref|ZP_06461055.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. aesculi str. NCPPB3681]
gi|289651289|ref|ZP_06482632.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. aesculi str. 2250]
gi|289677407|ref|ZP_06498297.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. syringae FF5]
gi|298489418|ref|ZP_07007429.1| Phosphate regulon transcriptional regulatory protein phoB
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|302187091|ref|ZP_07263764.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. syringae 642]
gi|63258963|gb|AAY40059.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|71554665|gb|AAZ33876.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. phaseolicola 1448A]
gi|298155992|gb|EFH97101.1| Phosphate regulon transcriptional regulatory protein phoB
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
gi|320321732|gb|EFW77830.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. glycinea str. B076]
gi|320331482|gb|EFW87422.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330870966|gb|EGH05675.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330890623|gb|EGH23284.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. mori str. 301020]
gi|330937451|gb|EGH41417.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330952444|gb|EGH52704.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae Cit 7]
gi|330970220|gb|EGH70286.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. aceris str. M302273PT]
gi|330986909|gb|EGH85012.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331011999|gb|EGH92055.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 229
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P
Sbjct: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR EL D+ ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|304394459|ref|ZP_07376380.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
sp. R2A130]
gi|303293369|gb|EFL87748.1| phosphate regulon transcriptional regulatory protein PhoB [Ahrensia
sp. R2A130]
Length = 233
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + L+ L KAG+ VV+ +G ++E +L++ D ++P + GIE
Sbjct: 8 KILVVEDEPSQQELLVYNLEKAGFRVVATGDGEDGVAAAQDENPALIVLDWMLPGLSGIE 67
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + ++ +T + + KP+ + +L+ V +
Sbjct: 68 VCRQLRRDADTRQIPIIMLTARGEEGDKVRALDTGADDYIVKPYSVAELLARVRAHIRRA 127
Query: 122 N 122
N
Sbjct: 128 N 128
>gi|282900388|ref|ZP_06308338.1| manR (Two component Transcriptional regulator, Winged helix family)
[Cylindrospermopsis raciborskii CS-505]
gi|281194701|gb|EFA69648.1| manR (Two component Transcriptional regulator, Winged helix family)
[Cylindrospermopsis raciborskii CS-505]
Length = 268
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KILL +D+ ++ L + L + GY V NG S + + + LL+ D ++PE G
Sbjct: 32 SMKILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTG 91
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 92 LEICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRS 151
Query: 122 N 122
+
Sbjct: 152 S 152
>gi|284046821|ref|YP_003397161.1| two component transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283951042|gb|ADB53786.1| two component transcriptional regulator, winged helix family
[Conexibacter woesei DSM 14684]
Length = 235
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+DD+RR + L +AG+ V NG A ++ L++ D+ MPE+D
Sbjct: 3 MAE-VLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R +L ++ V+ +T A ++KPF ++L+ V LL
Sbjct: 62 GWQTLERIRDLT-EVPVLMLTARAGELDKVRGLKSGADDYVTKPFGRQELLARVEALLRR 120
>gi|209883802|ref|YP_002287659.1| phosphate regulon transcriptional regulatory protein PhoB
[Oligotropha carboxidovorans OM5]
gi|209871998|gb|ACI91794.1| phosphate regulon transcriptional regulatory protein PhoB
[Oligotropha carboxidovorans OM5]
Length = 234
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MSARILVVEDEEALATLLRYNLDAEGYDVETVARGDEADTRLKERVPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|317495907|ref|ZP_07954270.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
gi|316914084|gb|EFV35567.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
Length = 223
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R + K L K Y V SC +G A D V + L++TDI+MP++DG E
Sbjct: 2 KILVVEDEKDLNRVITKHLKKNNYSVDSCFDGEQALDYVLYGEYDLIITDIMMPKIDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ V+ +T ++ + KPF +L+ + L+
Sbjct: 62 LIKQLRVKGNSTPVIMLTAKDSLDDKILGLDSGADDYIVKPFEFDELLARIRVLMRR 118
>gi|289435762|ref|YP_003465634.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289172006|emb|CBH28552.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
Length = 236
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+ VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRAGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + D+ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQNKVDVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|312197966|ref|YP_004018027.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229302|gb|ADP82157.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 233
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + L + L +AGYEV +G +A L++ D+++P ++G+E
Sbjct: 3 RVLIVDDDPTVADVLSRYLQRAGYEVDLAADGHAALATAAATRPDLVVLDLMLPGLNGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+ +T A ++KPF R+L V +L
Sbjct: 63 VCRRLRETGS-VPVVMLTALGAEHDRIVGLEHGADDYVTKPFSPRELTLRVQSVLRR 118
>gi|297567362|ref|YP_003686334.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296851811|gb|ADH64826.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 256
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ ED+ + L L + G EV +G SA + L++ D+++P +
Sbjct: 1 MRRRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ RR V+F++ + + KPFHL +L+ V +L+
Sbjct: 61 GLDVCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKPFHLPELLLRVQNMLSR 120
>gi|302669419|ref|YP_003829379.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302393892|gb|ADL32797.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+A+D+ ++ L+ L + Y V + NG A D + ++ DI+MP MDG E
Sbjct: 6 KLLIADDETELVNALVAILKHSNYTVDAVYNGTDALDYALAGDYDGIILDIMMPGMDGTE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E V+F+T V L KPF + +L+ V +L K
Sbjct: 66 VLKKIREKGLSTPVLFLTAKTEVDDRIRGLDLGADDYLPKPFDMGELLARVRAMLRRK 123
>gi|282896572|ref|ZP_06304590.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
brookii D9]
gi|281198514|gb|EFA73397.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis
brookii D9]
Length = 231
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + + L ++G+ V +N ++ +++ L+++D++MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDVMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ + L V+F+T + L KPF +L+ +N LL
Sbjct: 61 GYQFLKQLRDDPRFASLPVIFLTAKGMTSDRIQGYQAGVDAYLPKPFDPDELIAIINNLL 120
Query: 119 TIK 121
+
Sbjct: 121 EKR 123
>gi|226309596|ref|YP_002769490.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226092544|dbj|BAH40986.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M I + +DD ++R+ + L K GY + + A +E P L + DI++P M
Sbjct: 1 MKIYHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E RR + ++ ++ + L+KPF R+LV VNR L
Sbjct: 61 NGYEFCRRIRA-GSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQ 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|170017613|ref|YP_001728532.1| response regulator [Leuconostoc citreum KM20]
gi|169804470|gb|ACA83088.1| Response regulator [Leuconostoc citreum KM20]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L L + GY+V ++G +AYD ++E F +L D+++P +DG+
Sbjct: 3 KILVVDDEIAISTLLKYNLEENGYDVTVASDGQTAYDLAKQESFDAILLDLMLPVIDGMT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++KPF R++V V +L
Sbjct: 63 LLKNLRQDKVSTPVILVTAKGDEFDRVFGLELGADDYITKPFSPREVVARVKAVLRR 119
>gi|148658022|ref|YP_001278227.1| response regulator receiver modulated diguanylate cyclase
[Roseiflexus sp. RS-1]
gi|148570132|gb|ABQ92277.1| response regulator receiver modulated diguanylate cyclase
[Roseiflexus sp. RS-1]
Length = 443
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+A+D+ +R+ L L GYEVV+ NG +E L++ D++MP+MD
Sbjct: 1 MTKRILIADDEPAVRQLLELVLRSQGYEVVATQNGDQLVRTAQEWIPDLVIIDLMMPQMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E R+ + ++ +T + ++KPF++ +L+ + L
Sbjct: 61 GYEAIRQLRNDTRTAHVPMLILTARSTAEDVVTGFDTGADDYVTKPFNIPELLARIRAHL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|148253503|ref|YP_001238088.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146405676|gb|ABQ34182.1| two component transcriptional regulator, winged helix family
[Bradyrhizobium sp. BTAi1]
Length = 235
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GYEV + G A +++E L++ D ++P +
Sbjct: 1 MTARILVVEDEEALTTLLRYNLETEGYEVETVGRGDEADTRLKERVPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|238787963|ref|ZP_04631759.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
frederiksenii ATCC 33641]
gi|238723911|gb|EEQ15555.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
frederiksenii ATCC 33641]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|325261172|ref|ZP_08127910.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324032626|gb|EGB93903.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 230
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ ED++ + L + +EV N+G K EE F L++ D+++P +D
Sbjct: 1 MSKKILIIEDEESIADLEKDYLELSDFEVSVANDGEIGRRKALEEDFDLIILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ ++ ++KPF +LV V L
Sbjct: 61 GFEICRQVRDQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 119
>gi|326772529|ref|ZP_08231813.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
gi|326637161|gb|EGE38063.1| DNA-binding response regulator TrcR [Actinomyces viscosus C505]
Length = 248
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E
Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRR 134
>gi|297158650|gb|ADI08362.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 245
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + NGA A RE +L DI++P+MDG+
Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGNGAEALRITRELRPDAVLLDIMLPDMDGLT 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 81 LLGRVRNELPEVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRR 137
>gi|295395813|ref|ZP_06806001.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
gi|294971348|gb|EFG47235.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
Length = 226
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +DD + + L G+E C G A + R L+L D+++P D
Sbjct: 1 MNARILVVDDDTALAEMIGIVLKSEGFEPHFCATGDGAVEAFRSVRPDLILLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ +T + + KPF ++LV V L +
Sbjct: 61 GLEVCREIREE-SGVPIVMLTAKSDTMDVVKGLESGADDYVPKPFKPKELVARVRARLRM 119
>gi|220929080|ref|YP_002505989.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999408|gb|ACL76009.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 230
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D++ + L K G+ + ++G A D + LLL D++MP+ D
Sbjct: 1 MSKYILIADDNEGILDILKTYAAKEGFTPLLAHDGIEAVDIFNKYSPLLLLLDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + ++ ++ IT A A + KPF +++ + +L
Sbjct: 61 GFEVCREIRQ-NSNVPIIMITAKAEEADRIMGLDIGADDYIVKPFSPGEVMARIRAILRR 119
>gi|119963093|ref|YP_948412.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
gi|119949952|gb|ABM08863.1| DNA-binding response regulator [Arthrobacter aurescens TC1]
Length = 253
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+E V C +G A + R L+L D+++P D
Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R+ D+ ++ +T + + + KPF +LV V L
Sbjct: 90 GIEVCRQIRGE-SDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR 147
>gi|53711500|ref|YP_097492.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|253564441|ref|ZP_04841898.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|52214365|dbj|BAD46958.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|251948217|gb|EES88499.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|301161228|emb|CBW20766.1| putative two-component response regulator transcriptional
regulatory protein [Bacteroides fragilis 638R]
Length = 228
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL
Sbjct: 4 ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +P + ++ +T + D + KPF R+L + LL K
Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRK 120
>gi|289524120|ref|ZP_06440974.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
gi|289502776|gb|EFD23940.1| DNA-binding response regulator ArlR [Anaerobaculum hydrogeniformans
ATCC BAA-1850]
Length = 228
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+DD + L + L Y V + +NG A DK+ + F L++ D++MP +DG+
Sbjct: 3 RVLIADDDTSLLEQLREILASERYTVDTASNGIEAMDKLYDAVFDLVILDVMMPHIDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ V+ +T V L+KPF + +L+ V LL
Sbjct: 63 LLEQIRKGGINIPVLMLTAKGDVEDKVKGLNLGADDYLAKPFSIDELLARVRALLRR 119
>gi|242237780|ref|YP_002985961.1| osmolarity response regulator [Dickeya dadantii Ech703]
gi|242129837|gb|ACS84139.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech703]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|238921493|ref|YP_002935008.1| osmolarity response regulator [Edwardsiella ictaluri 93-146]
gi|269140620|ref|YP_003297321.1| osmolarity response regulator [Edwardsiella tarda EIB202]
gi|294638112|ref|ZP_06716369.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
23685]
gi|238871062|gb|ACR70773.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
gi|267986281|gb|ACY86110.1| osmolarity response regulator [Edwardsiella tarda EIB202]
gi|291088744|gb|EFE21305.1| transcriptional regulatory protein OmpR [Edwardsiella tarda ATCC
23685]
gi|304560407|gb|ADM43071.1| Two-component system response regulator OmpR [Edwardsiella tarda
FL6-60]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|257126355|ref|YP_003164469.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
gi|257050294|gb|ACV39478.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
Length = 224
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ D+ + K L K GY V S +G A D + + L++ DI+MP+++G E
Sbjct: 2 KILLAEDEIDLNNIITKYLKKNGYSVDSVLDGEEALDYLEYGEYDLVILDIMMPKVNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + + KPF +L+ + ++ K
Sbjct: 62 VIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELMARIRAVVRRK 119
>gi|257785147|ref|YP_003180364.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
gi|257473654|gb|ACV51773.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
Length = 237
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ +R + L + Y V +G SA ++ + F L++ D+++P++ G
Sbjct: 6 KKILIVEDEKVIRDAVSAYLERENYVVKGVGDGQSAVEEFEKHAFDLVILDLMLPKLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T V L KPF R+LV V L
Sbjct: 66 RVCRAIRD-TSNVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALFRR 122
>gi|145594662|ref|YP_001158959.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145303999|gb|ABP54581.1| response regulator receiver [Salinispora tropica CNB-440]
Length = 252
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + NG +A R+ ++ D+++P++DG
Sbjct: 27 RVLVVDDESTLADLLSMALRYEGWQVRTAGNGMAALSAARQFQPDAVVLDVMLPDLDGFA 86
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E+ P + V+F+T AV ++KPF L +++ + LL
Sbjct: 87 VLRRLREVAPTVPVLFLTARDAVEDRVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 143
>gi|87120074|ref|ZP_01075970.1| DNA-binding response regulator [Marinomonas sp. MED121]
gi|86164776|gb|EAQ66045.1| DNA-binding response regulator [Marinomonas sp. MED121]
Length = 244
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D ++++ L + L GY+V +NG +A + E L+L DI+MPEMD
Sbjct: 17 MSETILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIMMPEMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + DL V+ +T L KPF L +L+ + +L
Sbjct: 77 GYGFIHTMRQTH-DLPVIMVTAKQHEGDLIKGFELGADDYLIKPFKLSELLVRIKAVLRR 135
>gi|269216894|ref|ZP_06160748.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
gi|269129701|gb|EEZ60785.1| DNA-binding response regulator VicR [Slackia exigua ATCC 700122]
Length = 244
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD D+R L L GY V +GA A V+ L+L DI+MP +DG ++
Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L V+ ++ L+KPF+ + + V L
Sbjct: 71 LRRVRE-TSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRR 125
>gi|283797521|ref|ZP_06346674.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
gi|291074890|gb|EFE12254.1| transcriptional activator protein Irlr [Clostridium sp. M62/1]
Length = 223
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL AED+ +R +K L G+ V C +G A D + + +++ DI+MP +DG+
Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R VM +T AVA L+KPF +L + LL
Sbjct: 62 VLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118
>gi|149377172|ref|ZP_01894921.1| two component transcriptional regulator, winged helix family
protein [Marinobacter algicola DG893]
gi|149358590|gb|EDM47063.1| two component transcriptional regulator, winged helix family
protein [Marinobacter algicola DG893]
Length = 228
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDD+++R L + L G+ V NG + L++ DI++P++
Sbjct: 1 MQNRVLLVEDDEELRELLSRYLANQGFTVREAANGQDGLSLALGQHCDLVVLDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ L V+ +T + KP + R+L+ + LL
Sbjct: 61 GLEVLRQLRAKT-HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELIARLQALLRR 119
>gi|126650812|ref|ZP_01723028.1| two-component response regulator [Bacillus sp. B14905]
gi|126592477|gb|EAZ86495.1| two-component response regulator [Bacillus sp. B14905]
Length = 265
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL EDD + R + + + GY V G +E+PF L+L D ++PEMD
Sbjct: 34 MKVKLLLIEDDAAIGRIVKDTMEQEGYLVTWATTGLEGLADFQEQPFDLVLVDWMLPEMD 93
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + D+ ++ ++ A + ++KPF L +L V L
Sbjct: 94 GLTVCQNIR-WESDVPILMMSARKEEADKVEGLQ-GADDYIAKPFSLEELKARVASHLRR 151
>gi|160880258|ref|YP_001559226.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428924|gb|ABX42487.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 231
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M QK IL+ +D+ + + L Y+V NGA A++ +E SL++ D+++P++
Sbjct: 1 MKQKNILVVDDEPKILEVVASFLESQDYQVFQAENGAKAFEIFEKENISLIILDLMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ ++ + + ++ +T + ++KPF L++L+ V +L
Sbjct: 61 TGEEICKKIRK-TSRVPIIMLTAKVEENNLLEGLEIGADDYITKPFRLKELLARVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|260889615|ref|ZP_05900878.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
hofstadii F0254]
gi|260861026|gb|EEX75526.1| DNA-binding heavy metal response regulator CopR [Leptotrichia
hofstadii F0254]
Length = 235
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ ED+ + + + L K Y V SC +G A D + + +L+ DI++P++DG
Sbjct: 7 KMRILIVEDERMINDIIARTLRKENYSVDSCFDGQEALDYIFSAEYDVLILDIMLPKLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ +R V+F+T +V L KPF +L+ + +L K
Sbjct: 67 FEVLKRIRNKGIQTPVLFLTARESVQDRVKGLDYGADDYLVKPFDFEELLARIRVIL-RK 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|311114543|ref|YP_003985764.1| response regulator [Gardnerella vaginalis ATCC 14019]
gi|310946037|gb|ADP38741.1| response regulator [Gardnerella vaginalis ATCC 14019]
Length = 250
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ +R L+ +L AG++V + +G+ A D + L++ D+++P++DG +
Sbjct: 13 IVVVDDEPSIRELLVASLHFAGFDVETAASGSEAIDVIERVHPDLIVMDVMLPDIDGFTV 72
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+F+T ++KPF L ++V + +L
Sbjct: 73 TRRIRQNGVAVPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 128
>gi|91785406|ref|YP_560612.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91689360|gb|ABE32560.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
Length = 246
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|317125629|ref|YP_004099741.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315589717|gb|ADU49014.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 225
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G EV +G A RE L+L D+++P +D
Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRNEGLEVSHVADGTDAVAAFREARPDLVLLDVMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T + KPF ++L+ V L
Sbjct: 61 GMEVCRRIRAE-SGVPIVMLTARTDTVDVVVGLESGADDYVVKPFKPQELIARVRARLRR 119
>gi|269138436|ref|YP_003295136.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
tarda EIB202]
gi|267984096|gb|ACY83925.1| phosphate regulon transcriptional regulatory protein [Edwardsiella
tarda EIB202]
gi|304558462|gb|ADM41126.1| Phosphate regulon transcriptional regulatory protein PhoB
[Edwardsiella tarda FL6-60]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ +R + L + GY+ + + A ++ E L+L D ++P
Sbjct: 1 MSIRILVVEDETPIRDMVSFVLEQNGYQPLEAESYDGALSQLCEPYPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L ++ ++ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254518210|ref|ZP_05130266.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
gi|226911959|gb|EEH97160.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
Length = 230
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V +NG A + + +E L++ DI+MP MD
Sbjct: 1 MNNNILVIDDEKEIRDLLEINLKNEGYNVFKASNGEKALEILDKEEIHLMVLDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR E ++ ++ ++ + KPF+ +L + LL
Sbjct: 61 GLEVCRRVREKY-NIPILMLSAKTEDMDKIQGIMTGADDYVCKPFNHLELTVRIRALLRR 119
>gi|313680468|ref|YP_004058207.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313153183|gb|ADR37034.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 235
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY +G + K RE +L++ D+++P MDG+E+
Sbjct: 17 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ ++ +T AV + L KPF + +L+ V L
Sbjct: 77 ARRIRK-TSNIPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 131
>gi|171911888|ref|ZP_02927358.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ EDD D+RR L+ L + Y V + +GA + + E + +++ D+++P + G
Sbjct: 11 SMRVLVVEDDPDLRRSLVATLREENYAVDAAGDGAEGFQRALENEYDVIVLDVMLPGLSG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ V+ +T AV L+KPF + +L+ + L+
Sbjct: 71 WEFLQKLRP-TKTSPVLMLTARDAVQDRVKGLNQGADDYLTKPFDIEELLARIRALIRR 128
>gi|147676785|ref|YP_001211000.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146272882|dbj|BAF58631.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 225
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L + L G+EV + G L++ D++MP D
Sbjct: 1 MEAKILVIDDDRKITAMLRRCLVFEGFEVQTAAGGEEGLRLAAAWKPDLVVLDVLMPGTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR L ++ +T VA L KPF L +L+ + LL
Sbjct: 61 GWEVCRRLRA-GSSLPILMLTAKDEVADRVKGLDLGADDYLVKPFALEELLARIRALLRR 119
>gi|116490221|ref|YP_809765.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
gi|290889603|ref|ZP_06552693.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
gi|116090946|gb|ABJ56100.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Oenococcus oeni PSU-1]
gi|290480801|gb|EFD89435.1| hypothetical protein AWRIB429_0083 [Oenococcus oeni AWRIB429]
Length = 237
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+VV+ +G A + E L+L D ++PE++
Sbjct: 1 MS-KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIE 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + V+ +T + ++KPF R+LV V L
Sbjct: 60 GTEVLRQIRS-NSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 118
Query: 121 KN 122
++
Sbjct: 119 QD 120
>gi|50955358|ref|YP_062646.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50951840|gb|AAT89541.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 233
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +IL+ +D+ ++R L +L AG+ V + NGA A V EE +++ D+++P+
Sbjct: 4 MNAGPRILIVDDEPNIRDLLTTSLRFAGFAVRAVGNGAQAISAVLEEEPDIIVLDVMLPD 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G + +R ++F+T ++KPF L ++V + +L
Sbjct: 64 MNGFGVTKRLRGAGYTAPILFLTAKDDTEDKITGLTVGGDDYVTKPFSLDEIVARIKAIL 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|75909821|ref|YP_324117.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75703546|gb|ABA23222.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 393
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D D + L + GY V + NG SA +++ P L+L D++MP MDG
Sbjct: 8 SGKILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDG 67
Query: 62 IELARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ RR +L + ++ IT A + KP + +L+ V LL
Sbjct: 68 YEVTRRVRGEMKLQQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLL 126
Query: 119 TIKN 122
+K+
Sbjct: 127 RLKH 130
>gi|89091881|ref|ZP_01164836.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
gi|89083616|gb|EAR62833.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD D+RR L+ AL Y V +G A +E P+ L + D+ +P++ GIE
Sbjct: 2 KLLVVEDDPDLRRQLVTALENKNYTVEETADGEEALYLGQEYPYDLAIVDLGLPKLSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + ++ +T + L KPFH+ +L +N LL
Sbjct: 62 VIRQWRDDGKEFPIIILTARGDWQDKVEGLEAGADDYLVKPFHMEELQARLNALLRR 118
>gi|325295330|ref|YP_004281844.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065778|gb|ADY73785.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 223
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + L K L + GY V +G + R + +++ D+++P++DG+E
Sbjct: 2 KILLVEDEKLLANTLKKGLEEEGYIVDVAYDGEEGFFLGRCYGYDVIILDVMLPKLDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + E ++ +T +V L+KPF +L+ + LL K+
Sbjct: 62 LLLKLREEGVKTPILMLTAKDSVEDKVKGLDSGADDYLTKPFSYDELLARIRALLRRKS 120
>gi|312863278|ref|ZP_07723516.1| response regulator SaeR [Streptococcus vestibularis F0396]
gi|322516455|ref|ZP_08069377.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
gi|311100814|gb|EFQ59019.1| response regulator SaeR [Streptococcus vestibularis F0396]
gi|322125048|gb|EFX96454.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
Length = 232
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|307265844|ref|ZP_07547394.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919119|gb|EFN49343.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 231
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KI + +D+ + + L + G+ V++ NG + + ++E L++ D+++P +
Sbjct: 1 MDKKIFVVDDEIKILEVVKSYLEREGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|291568908|dbj|BAI91180.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 483
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D D R L L K GY+V +G A + L+L DI+MPEMDG +
Sbjct: 14 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 73
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D+ V+F+T + A L+KPF + + + + LT++
Sbjct: 74 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTLR 133
Query: 122 N 122
+
Sbjct: 134 S 134
>gi|254518068|ref|ZP_05130124.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226911817|gb|EEH97018.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 237
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ ++R + L GY+ + NG A + + L++ DI+MP++
Sbjct: 1 MSKERILIVDDEKEIRDLIDIYLKGEGYDTIKAENGEEALNILSSNDVDLIILDIMMPKV 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GIE + E ++ ++ ++ + L+KPF+ +LV V L
Sbjct: 61 NGIEACLKIREER-EMPIIMLSAKSEDMDKILGLNTGADDYLTKPFNPLELVARVRSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|93006927|ref|YP_581364.1| two component transcriptional regulator [Psychrobacter
cryohalolentis K5]
gi|92394605|gb|ABE75880.1| two component transcriptional regulator, winged helix family
[Psychrobacter cryohalolentis K5]
Length = 240
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M+++ILL EDD D+ + L Y+V G D + +E L++ D+++P+
Sbjct: 1 MSKQILLIEDDPDLAELISDYLTMNYYDVHHAGLGQEGLDLLDTKERDIDLVVLDLMLPD 60
Query: 59 MDGIELARRAT----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+++ ++ + + ++ +T ++KPF R+L+ +
Sbjct: 61 MDGMQVCQKIRGNKNNMTNKVPIIMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120
Query: 115 NRLLTI 120
++
Sbjct: 121 RAVIRR 126
>gi|187925557|ref|YP_001897199.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|187716751|gb|ACD17975.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 246
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|87301695|ref|ZP_01084535.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
gi|87283912|gb|EAQ75866.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
Length = 268
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +RR L+ L AGY VV +G A +E L++ D+++P++DG
Sbjct: 25 TVLVVDDEATVRRVLVMRLQLAGYRVVCAEDGEQALSLFHDEQPDLVVLDVMLPKLDGFA 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A+A L KPF ++L + +L
Sbjct: 85 VCRRLRAE-SCVPIIFLSALDAIAERVAGLDLGADDYLPKPFSPKELEARIATILRR 140
>gi|228927067|ref|ZP_04090132.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|229121552|ref|ZP_04250779.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 95/8201]
gi|228662016|gb|EEL17629.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 95/8201]
gi|228832574|gb|EEM78146.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 232
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|186477531|ref|YP_001859001.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184193990|gb|ACC71955.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 245
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L + L GY+ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCRFLQSNGYDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ + +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIIGLSLGADDYLTKPFDPRELLARIQTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|86608522|ref|YP_477284.1| LuxR family DNA-binding response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557064|gb|ABD02021.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DD + L + L + GY V + +G +E ++++D+VMPEMDG
Sbjct: 2 KRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDGF 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R+ + + +F++ + + KPF +LV ++ +
Sbjct: 62 EFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIER 121
>gi|15803909|ref|NP_289945.1| osmolarity response regulator [Escherichia coli O157:H7 EDL933]
gi|15833501|ref|NP_312274.1| osmolarity response regulator [Escherichia coli O157:H7 str. Sakai]
gi|16131282|ref|NP_417864.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K-12 substr. MG1655]
gi|16762785|ref|NP_458402.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|16766790|ref|NP_462405.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|26250005|ref|NP_756045.1| osmolarity response regulator [Escherichia coli CFT073]
gi|29144272|ref|NP_807614.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|30065312|ref|NP_839483.1| osmolarity response regulator [Shigella flexneri 2a str. 2457T]
gi|56415417|ref|YP_152492.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|56480330|ref|NP_709178.2| osmolarity response regulator [Shigella flexneri 2a str. 301]
gi|74313908|ref|YP_312327.1| osmolarity response regulator [Shigella sonnei Ss046]
gi|82545760|ref|YP_409707.1| osmolarity response regulator [Shigella boydii Sb227]
gi|82778778|ref|YP_405127.1| osmolarity response regulator [Shigella dysenteriae Sd197]
gi|89110605|ref|AP_004385.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K-12 substr. W3110]
gi|91212879|ref|YP_542865.1| osmolarity response regulator [Escherichia coli UTI89]
gi|110643638|ref|YP_671368.1| osmolarity response regulator [Escherichia coli 536]
gi|110807237|ref|YP_690757.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
gi|117625672|ref|YP_858995.1| osmolarity response regulator [Escherichia coli APEC O1]
gi|146313450|ref|YP_001178524.1| osmolarity response regulator [Enterobacter sp. 638]
gi|152972283|ref|YP_001337429.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|157155385|ref|YP_001464862.1| osmolarity response regulator [Escherichia coli E24377A]
gi|157162882|ref|YP_001460200.1| osmolarity response regulator [Escherichia coli HS]
gi|161505932|ref|YP_001573044.1| osmolarity response regulator [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|161616542|ref|YP_001590507.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|167549294|ref|ZP_02343053.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990705|ref|ZP_02571804.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232639|ref|ZP_02657697.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235095|ref|ZP_02660153.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168241642|ref|ZP_02666574.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168260774|ref|ZP_02682747.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465230|ref|ZP_02699122.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168747118|ref|ZP_02772140.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4113]
gi|168753157|ref|ZP_02778164.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4401]
gi|168759429|ref|ZP_02784436.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4501]
gi|168765752|ref|ZP_02790759.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4486]
gi|168772704|ref|ZP_02797711.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4196]
gi|168779488|ref|ZP_02804495.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4076]
gi|168785209|ref|ZP_02810216.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC869]
gi|168797175|ref|ZP_02822182.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC508]
gi|168818686|ref|ZP_02830686.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|170018359|ref|YP_001723313.1| osmolarity response regulator [Escherichia coli ATCC 8739]
gi|170082922|ref|YP_001732242.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K-12 substr. DH10B]
gi|170679581|ref|YP_001745653.1| osmolarity response regulator [Escherichia coli SMS-3-5]
gi|187731609|ref|YP_001882082.1| osmolarity response regulator [Shigella boydii CDC 3083-94]
gi|188494829|ref|ZP_03002099.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
gi|188535332|ref|YP_001909129.1| osmolarity response regulator [Erwinia tasmaniensis Et1/99]
gi|191167885|ref|ZP_03029689.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
gi|191171568|ref|ZP_03033116.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
gi|193061647|ref|ZP_03042744.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
gi|193068756|ref|ZP_03049716.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
gi|194426991|ref|ZP_03059543.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
gi|194431316|ref|ZP_03063609.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
gi|194435761|ref|ZP_03067864.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
gi|194444248|ref|YP_002042753.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194451706|ref|YP_002047526.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194470984|ref|ZP_03076968.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194736616|ref|YP_002116444.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|195934894|ref|ZP_03080276.1| osmolarity response regulator [Escherichia coli O157:H7 str.
EC4024]
gi|195940963|ref|ZP_03086345.1| osmolarity response regulator [Escherichia coli O157:H7 str.
EC4024]
gi|197250375|ref|YP_002148425.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197261835|ref|ZP_03161909.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197364347|ref|YP_002143984.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198243980|ref|YP_002217461.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386697|ref|ZP_03213309.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928549|ref|ZP_03219748.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354874|ref|YP_002228675.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206580912|ref|YP_002236223.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
gi|207858742|ref|YP_002245393.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|208808819|ref|ZP_03251156.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4206]
gi|208813810|ref|ZP_03255139.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4045]
gi|208819419|ref|ZP_03259739.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4042]
gi|209400499|ref|YP_002272840.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4115]
gi|209920861|ref|YP_002294945.1| osmolarity response regulator [Escherichia coli SE11]
gi|213426887|ref|ZP_03359637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213852070|ref|ZP_03381602.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|215488686|ref|YP_002331117.1| osmolarity response regulator [Escherichia coli O127:H6 str.
E2348/69]
gi|217324126|ref|ZP_03440210.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. TW14588]
gi|218550663|ref|YP_002384454.1| osmolarity response regulator [Escherichia fergusonii ATCC 35469]
gi|218555954|ref|YP_002388867.1| osmolarity response regulator [Escherichia coli IAI1]
gi|218560463|ref|YP_002393376.1| osmolarity response regulator [Escherichia coli S88]
gi|218691682|ref|YP_002399894.1| osmolarity response regulator [Escherichia coli ED1a]
gi|218697088|ref|YP_002404755.1| osmolarity response regulator [Escherichia coli 55989]
gi|218702150|ref|YP_002409779.1| osmolarity response regulator [Escherichia coli IAI39]
gi|218706996|ref|YP_002414515.1| osmolarity response regulator [Escherichia coli UMN026]
gi|224585296|ref|YP_002639095.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|227883539|ref|ZP_04001344.1| response regulator [Escherichia coli 83972]
gi|237703135|ref|ZP_04533616.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
gi|238902496|ref|YP_002928292.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli BW2952]
gi|238910492|ref|ZP_04654329.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|254795320|ref|YP_003080157.1| osmolarity response regulator [Escherichia coli O157:H7 str.
TW14359]
gi|256020749|ref|ZP_05434614.1| osmolarity response regulator [Shigella sp. D9]
gi|256025867|ref|ZP_05439732.1| osmolarity response regulator [Escherichia sp. 4_1_40B]
gi|259910053|ref|YP_002650409.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
gi|260846189|ref|YP_003223967.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O103:H2 str. 12009]
gi|260857512|ref|YP_003231403.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O26:H11 str. 11368]
gi|260870131|ref|YP_003236533.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O111:H- str. 11128]
gi|261224686|ref|ZP_05938967.1| osmolarity response regulator [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254419|ref|ZP_05946952.1| osmolarity response regulator [Escherichia coli O157:H7 str.
FRIK966]
gi|262045241|ref|ZP_06018267.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|283787961|ref|YP_003367826.1| two-component response regulator [Citrobacter rodentium ICC168]
gi|283835800|ref|ZP_06355541.1| hypothetical protein CIT292_10194 [Citrobacter youngae ATCC 29220]
gi|288933210|ref|YP_003437269.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|289824834|ref|ZP_06544277.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|290512014|ref|ZP_06551382.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Klebsiella sp. 1_1_55]
gi|291284741|ref|YP_003501559.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
CB9615]
gi|291619235|ref|YP_003521977.1| OmpR [Pantoea ananatis LMG 20103]
gi|292489908|ref|YP_003532798.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
gi|292900945|ref|YP_003540314.1| two-component response regulator [Erwinia amylovora ATCC 49946]
gi|293406983|ref|ZP_06650907.1| ompR [Escherichia coli FVEC1412]
gi|293412822|ref|ZP_06655490.1| ompR [Escherichia coli B354]
gi|298382725|ref|ZP_06992320.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
gi|300718778|ref|YP_003743581.1| transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
gi|300815399|ref|ZP_07095624.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
gi|300822798|ref|ZP_07102934.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
gi|300898908|ref|ZP_07117207.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
gi|300907453|ref|ZP_07125098.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
gi|300919310|ref|ZP_07135823.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
gi|300926906|ref|ZP_07142671.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
gi|300931064|ref|ZP_07146418.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
gi|300937298|ref|ZP_07152139.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
gi|300946853|ref|ZP_07161093.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
gi|300956733|ref|ZP_07169004.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
gi|300985401|ref|ZP_07177424.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
gi|300987222|ref|ZP_07178059.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
gi|301019578|ref|ZP_07183738.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
gi|301023125|ref|ZP_07186931.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
gi|301050386|ref|ZP_07197273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
gi|301302283|ref|ZP_07208415.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
gi|301329710|ref|ZP_07222459.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
gi|306816257|ref|ZP_07450395.1| osmolarity response regulator [Escherichia coli NC101]
gi|307140090|ref|ZP_07499446.1| osmolarity response regulator [Escherichia coli H736]
gi|307311931|ref|ZP_07591569.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|309785850|ref|ZP_07680481.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
gi|309794675|ref|ZP_07689097.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
gi|311277661|ref|YP_003939892.1| two component transcriptional regulator, winged helix family
[Enterobacter cloacae SCF1]
gi|312968285|ref|ZP_07782495.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
gi|312972331|ref|ZP_07786505.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
gi|317049901|ref|YP_004117549.1| winged helix family two component transcriptional regulator
[Pantoea sp. At-9b]
gi|330012469|ref|ZP_08307383.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
gi|331644105|ref|ZP_08345234.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
gi|331649203|ref|ZP_08350289.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
gi|331654982|ref|ZP_08355981.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
gi|331659694|ref|ZP_08360632.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
gi|331665010|ref|ZP_08365911.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
gi|331670227|ref|ZP_08371066.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
gi|331679469|ref|ZP_08380139.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
gi|331685045|ref|ZP_08385631.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
gi|332281952|ref|ZP_08394365.1| transcriptional regulatory protein ompR [Shigella sp. D9]
gi|76364198|sp|P0AA16|OMPR_ECOLI RecName: Full=Transcriptional regulatory protein ompR
gi|76364199|sp|P0AA20|OMPR_SALTI RecName: Full=Transcriptional regulatory protein ompR
gi|76364200|sp|P0AA19|OMPR_SALTY RecName: Full=Transcriptional regulatory protein ompR
gi|76364201|sp|P0AA21|OMPR_SHIFL RecName: Full=Transcriptional regulatory protein ompR
gi|85692720|sp|P0AA18|OMPR_ECO57 RecName: Full=Transcriptional regulatory protein ompR
gi|85692721|sp|P0AA17|OMPR_ECOL6 RecName: Full=Transcriptional regulatory protein ompR
gi|25300972|pir||AD0998 two-component response regulator OmpR ompR [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|12518032|gb|AAG58506.1|AE005562_9 response regulator (sensor, EnvZ) affecting transcription of ompC
and ompF: outer membrane protein synthesis [Escherichia
coli O157:H7 str. EDL933]
gi|26110434|gb|AAN82619.1|AE016768_37 Transcriptional Regulatory protein ompR [Escherichia coli CFT073]
gi|453287|gb|AAA16241.1| OmpR protein [Escherichia coli]
gi|602089|emb|CAA54510.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
gi|606339|gb|AAA58202.1| CG Site No. 434; alternate name ompB [Escherichia coli str. K-12
substr. MG1655]
gi|1789809|gb|AAC76430.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K-12 substr. MG1655]
gi|13276842|emb|CAC34268.1| OmpR protein [Shigella flexneri]
gi|13363721|dbj|BAB37670.1| response regulator OmpR [Escherichia coli O157:H7 str. Sakai]
gi|16422061|gb|AAL22364.1| response regulator in two-component regulatory system with EnvZ
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|16505091|emb|CAD08112.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139909|gb|AAO71474.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|30043574|gb|AAP19294.1| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 2457T]
gi|56129674|gb|AAV79180.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|56383881|gb|AAN44885.2| response regulator (sensor, EnvZ) [Shigella flexneri 2a str. 301]
gi|73857385|gb|AAZ90092.1| response regulator [Shigella sonnei Ss046]
gi|81242926|gb|ABB63636.1| response regulator affecting transcription of ompC and ompF
[Shigella dysenteriae Sd197]
gi|81247171|gb|ABB67879.1| OmpR [Shigella boydii Sb227]
gi|85676636|dbj|BAE77886.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K12 substr. W3110]
gi|91074453|gb|ABE09334.1| transcriptional regulatory protein OmpR [Escherichia coli UTI89]
gi|110345230|gb|ABG71467.1| transcriptional regulatory protein OmpR [Escherichia coli 536]
gi|110616785|gb|ABF05452.1| osmolarity response regulator [Shigella flexneri 5 str. 8401]
gi|115514796|gb|ABJ02871.1| osmolarity response regulator OmpR [Escherichia coli APEC O1]
gi|145320326|gb|ABP62473.1| two component transcriptional regulator, winged helix family
[Enterobacter sp. 638]
gi|150957132|gb|ABR79162.1| osmolarity response regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|157068562|gb|ABV07817.1| transcriptional regulatory protein OmpR [Escherichia coli HS]
gi|157077415|gb|ABV17123.1| transcriptional regulatory protein OmpR [Escherichia coli E24377A]
gi|160867279|gb|ABX23902.1| hypothetical protein SARI_04113 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
gi|161365906|gb|ABX69674.1| hypothetical protein SPAB_04358 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|169753287|gb|ACA75986.1| two component transcriptional regulator, winged helix family
[Escherichia coli ATCC 8739]
gi|169890757|gb|ACB04464.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli str. K-12 substr. DH10B]
gi|170517299|gb|ACB15477.1| transcriptional regulatory protein OmpR [Escherichia coli SMS-3-5]
gi|187428601|gb|ACD07875.1| transcriptional regulatory protein OmpR [Shigella boydii CDC
3083-94]
gi|187771637|gb|EDU35481.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4196]
gi|188018416|gb|EDU56538.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4113]
gi|188030374|emb|CAO98265.1| Transcriptional regulatory protein OmpR [Erwinia tasmaniensis
Et1/99]
gi|188490028|gb|EDU65131.1| transcriptional regulatory protein OmpR [Escherichia coli 53638]
gi|189002353|gb|EDU71339.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4076]
gi|189358802|gb|EDU77221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4401]
gi|189364583|gb|EDU83002.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4486]
gi|189369806|gb|EDU88222.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4501]
gi|189374544|gb|EDU92960.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC869]
gi|189379922|gb|EDU98338.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC508]
gi|190902058|gb|EDV61803.1| transcriptional regulatory protein OmpR [Escherichia coli B7A]
gi|190908195|gb|EDV67786.1| transcriptional regulatory protein OmpR [Escherichia coli F11]
gi|192932437|gb|EDV85034.1| transcriptional regulatory protein OmpR [Escherichia coli E22]
gi|192957832|gb|EDV88275.1| transcriptional regulatory protein OmpR [Escherichia coli E110019]
gi|194402911|gb|ACF63133.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194410010|gb|ACF70229.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194414952|gb|EDX31222.1| transcriptional regulatory protein OmpR [Escherichia coli B171]
gi|194420771|gb|EDX36847.1| transcriptional regulatory protein OmpR [Shigella dysenteriae 1012]
gi|194425304|gb|EDX41288.1| transcriptional regulatory protein OmpR [Escherichia coli 101-1]
gi|194457348|gb|EDX46187.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712118|gb|ACF91339.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195632389|gb|EDX50873.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095824|emb|CAR61397.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197214078|gb|ACH51475.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240090|gb|EDY22710.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197291564|gb|EDY30916.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197938496|gb|ACH75829.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603795|gb|EDZ02340.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321982|gb|EDZ07180.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205274655|emb|CAR39709.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205325884|gb|EDZ13723.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205330636|gb|EDZ17400.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333120|gb|EDZ19884.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338846|gb|EDZ25610.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205344561|gb|EDZ31325.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350330|gb|EDZ36961.1| transcriptional regulatory protein OmpR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206569970|gb|ACI11746.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae 342]
gi|206710545|emb|CAR34903.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|208728620|gb|EDZ78221.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4206]
gi|208735087|gb|EDZ83774.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4045]
gi|208739542|gb|EDZ87224.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4042]
gi|209161899|gb|ACI39332.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. EC4115]
gi|209756518|gb|ACI76571.1| response regulator OmpR [Escherichia coli]
gi|209756520|gb|ACI76572.1| response regulator OmpR [Escherichia coli]
gi|209756522|gb|ACI76573.1| response regulator OmpR [Escherichia coli]
gi|209756524|gb|ACI76574.1| response regulator OmpR [Escherichia coli]
gi|209756526|gb|ACI76575.1| response regulator OmpR [Escherichia coli]
gi|209914120|dbj|BAG79194.1| two-component response regulator [Escherichia coli SE11]
gi|215266758|emb|CAS11198.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O127:H6 str.
E2348/69]
gi|217320347|gb|EEC28771.1| transcriptional regulatory protein OmpR [Escherichia coli O157:H7
str. TW14588]
gi|218353820|emb|CAV00172.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli 55989]
gi|218358204|emb|CAQ90851.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia fergusonii ATCC 35469]
gi|218362722|emb|CAR00348.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli IAI1]
gi|218367232|emb|CAR05006.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli S88]
gi|218372136|emb|CAR19998.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli IAI39]
gi|218429246|emb|CAR10202.2| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli ED1a]
gi|218434093|emb|CAR15010.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli UMN026]
gi|222035107|emb|CAP77852.1| Transcriptional regulatory protein ompR [Escherichia coli LF82]
gi|224469824|gb|ACN47654.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224965675|emb|CAX57207.1| osmolarity response regulator [Erwinia pyrifoliae Ep1/96]
gi|226902399|gb|EEH88658.1| transcriptional regulatory protein ompR [Escherichia sp. 3_2_53FAA]
gi|227839418|gb|EEJ49884.1| response regulator [Escherichia coli 83972]
gi|238860863|gb|ACR62861.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli BW2952]
gi|254594720|gb|ACT74081.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli O157:H7 str. TW14359]
gi|257756161|dbj|BAI27663.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O26:H11 str. 11368]
gi|257761336|dbj|BAI32833.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O103:H2 str. 12009]
gi|257766487|dbj|BAI37982.1| DNA-binding response regulator OmpR in two-component regulatory
system with EnvZ [Escherichia coli O111:H- str. 11128]
gi|259037451|gb|EEW38696.1| transcriptional regulatory protein OmpR [Klebsiella pneumoniae
subsp. rhinoscleromatis ATCC 13884]
gi|260447576|gb|ACX37998.1| two component transcriptional regulator, winged helix family
[Escherichia coli DH1]
gi|261248657|emb|CBG26495.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995722|gb|ACY90607.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|281180437|dbj|BAI56767.1| two-component response regulator [Escherichia coli SE15]
gi|281602755|gb|ADA75739.1| Transcriptional regulatory protein ompR [Shigella flexneri 2002017]
gi|282951415|emb|CBG91114.1| two-component response regulator [Citrobacter rodentium ICC168]
gi|283480152|emb|CAY76068.1| two-component response regulator OmpR [Erwinia pyrifoliae DSM
12163]
gi|284923397|emb|CBG36491.1| two-component response regulator [Escherichia coli 042]
gi|288887939|gb|ADC56257.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|289775804|gb|EFD83804.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Klebsiella sp. 1_1_55]
gi|290764614|gb|ADD58575.1| hypothetical protein G2583_4102 [Escherichia coli O55:H7 str.
CB9615]
gi|291067965|gb|EFE06074.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
29220]
gi|291154265|gb|ADD78849.1| OmpR [Pantoea ananatis LMG 20103]
gi|291200793|emb|CBJ47927.1| two-component response regulator [Erwinia amylovora ATCC 49946]
gi|291425794|gb|EFE98828.1| ompR [Escherichia coli FVEC1412]
gi|291468469|gb|EFF10962.1| ompR [Escherichia coli B354]
gi|291555345|emb|CBA23707.1| two-component response regulator OmpR [Erwinia amylovora CFBP1430]
gi|294490408|gb|ADE89164.1| transcriptional regulatory protein OmpR [Escherichia coli IHE3034]
gi|295097016|emb|CBK86106.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|298276561|gb|EFI18079.1| transcriptional regulatory protein ompR [Escherichia coli FVEC1302]
gi|299064614|emb|CAX61734.1| Transcriptional regulator, OmpR-family [Erwinia billingiae Eb661]
gi|299880979|gb|EFI89190.1| transcriptional regulatory protein OmpR [Escherichia coli MS 196-1]
gi|300297896|gb|EFJ54281.1| transcriptional regulatory protein OmpR [Escherichia coli MS 185-1]
gi|300306257|gb|EFJ60777.1| transcriptional regulatory protein OmpR [Escherichia coli MS 200-1]
gi|300316489|gb|EFJ66273.1| transcriptional regulatory protein OmpR [Escherichia coli MS 175-1]
gi|300357447|gb|EFJ73317.1| transcriptional regulatory protein OmpR [Escherichia coli MS 198-1]
gi|300399166|gb|EFJ82704.1| transcriptional regulatory protein OmpR [Escherichia coli MS 69-1]
gi|300400791|gb|EFJ84329.1| transcriptional regulatory protein OmpR [Escherichia coli MS 84-1]
gi|300408084|gb|EFJ91622.1| transcriptional regulatory protein OmpR [Escherichia coli MS 45-1]
gi|300413605|gb|EFJ96915.1| transcriptional regulatory protein OmpR [Escherichia coli MS 115-1]
gi|300417089|gb|EFK00400.1| transcriptional regulatory protein OmpR [Escherichia coli MS 182-1]
gi|300453462|gb|EFK17082.1| transcriptional regulatory protein OmpR [Escherichia coli MS 116-1]
gi|300457621|gb|EFK21114.1| transcriptional regulatory protein OmpR [Escherichia coli MS 21-1]
gi|300461084|gb|EFK24577.1| transcriptional regulatory protein OmpR [Escherichia coli MS 187-1]
gi|300524564|gb|EFK45633.1| transcriptional regulatory protein OmpR [Escherichia coli MS 119-7]
gi|300532291|gb|EFK53353.1| transcriptional regulatory protein OmpR [Escherichia coli MS 107-1]
gi|300842446|gb|EFK70206.1| transcriptional regulatory protein OmpR [Escherichia coli MS 124-1]
gi|300844222|gb|EFK71982.1| transcriptional regulatory protein OmpR [Escherichia coli MS 78-1]
gi|301160045|emb|CBW19564.1| two-component response regulator OmpR [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|305850653|gb|EFM51110.1| osmolarity response regulator [Escherichia coli NC101]
gi|306908075|gb|EFN38575.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|307555491|gb|ADN48266.1| transcriptional regulatory protein OmpR [Escherichia coli ABU
83972]
gi|307628466|gb|ADN72770.1| osmolarity response regulator [Escherichia coli UM146]
gi|308121725|gb|EFO58987.1| transcriptional regulatory protein OmpR [Escherichia coli MS 145-7]
gi|308746856|gb|ADO46608.1| two component transcriptional regulator, winged helix family
[Enterobacter cloacae SCF1]
gi|308926970|gb|EFP72446.1| transcriptional regulatory protein ompR [Shigella dysenteriae 1617]
gi|309703816|emb|CBJ03157.1| two-component response regulator [Escherichia coli ETEC H10407]
gi|310334708|gb|EFQ00913.1| transcriptional regulatory protein ompR [Escherichia coli 1827-70]
gi|310765655|gb|ADP10605.1| osmolarity response regulator [Erwinia sp. Ejp617]
gi|312174092|emb|CBX82345.1| two-component response regulator OmpR [Erwinia amylovora ATCC
BAA-2158]
gi|312287110|gb|EFR15020.1| transcriptional regulatory protein ompR [Escherichia coli 2362-75]
gi|312914526|dbj|BAJ38500.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|312947953|gb|ADR28780.1| osmolarity response regulator [Escherichia coli O83:H1 str. NRG
857C]
gi|313647299|gb|EFS11751.1| transcriptional regulatory protein ompR [Shigella flexneri 2a str.
2457T]
gi|315062684|gb|ADT77011.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Escherichia coli W]
gi|315137981|dbj|BAJ45140.1| osmolarity response regulator [Escherichia coli DH1]
gi|315255995|gb|EFU35963.1| transcriptional regulatory protein OmpR [Escherichia coli MS 85-1]
gi|315286031|gb|EFU45469.1| transcriptional regulatory protein OmpR [Escherichia coli MS 110-3]
gi|315291671|gb|EFU51027.1| transcriptional regulatory protein OmpR [Escherichia coli MS 153-1]
gi|315295898|gb|EFU55211.1| transcriptional regulatory protein OmpR [Escherichia coli MS 16-3]
gi|315614673|gb|EFU95313.1| transcriptional regulatory protein ompR [Escherichia coli 3431]
gi|316951518|gb|ADU70993.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
gi|320087917|emb|CBY97679.1| probable transcriptional regulator ycf27 OmpR-like protein
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|320175772|gb|EFW50858.1| Two-component system response regulator OmpR [Shigella dysenteriae
CDC 74-1112]
gi|320186725|gb|EFW61448.1| Two-component system response regulator OmpR [Shigella flexneri CDC
796-83]
gi|320191584|gb|EFW66234.1| Two-component system response regulator OmpR [Escherichia coli
O157:H7 str. EC1212]
gi|320197363|gb|EFW71978.1| Two-component system response regulator OmpR [Escherichia coli
WV_060327]
gi|320199575|gb|EFW74165.1| Two-component system response regulator OmpR [Escherichia coli
EC4100B]
gi|320639687|gb|EFX09281.1| osmolarity response regulator [Escherichia coli O157:H7 str. G5101]
gi|320645185|gb|EFX14201.1| osmolarity response regulator [Escherichia coli O157:H- str.
493-89]
gi|320650496|gb|EFX18962.1| osmolarity response regulator [Escherichia coli O157:H- str. H
2687]
gi|320655688|gb|EFX23611.1| osmolarity response regulator [Escherichia coli O55:H7 str. 3256-97
TW 07815]
gi|320661472|gb|EFX28887.1| osmolarity response regulator [Escherichia coli O55:H7 str. USDA
5905]
gi|320666495|gb|EFX33478.1| osmolarity response regulator [Escherichia coli O157:H7 str.
LSU-61]
gi|321226552|gb|EFX51602.1| Two-component system response regulator OmpR [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322614124|gb|EFY11060.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618016|gb|EFY14909.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322625370|gb|EFY22196.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322629835|gb|EFY26608.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322632276|gb|EFY29027.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322636373|gb|EFY33080.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322643229|gb|EFY39798.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644769|gb|EFY41305.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322651206|gb|EFY47590.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322654926|gb|EFY51241.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659183|gb|EFY55435.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322663116|gb|EFY59320.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322668602|gb|EFY64755.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322674594|gb|EFY70687.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322678200|gb|EFY74261.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322682543|gb|EFY78564.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684256|gb|EFY80262.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323131861|gb|ADX19291.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
gi|323154238|gb|EFZ40441.1| transcriptional regulatory protein ompR [Escherichia coli EPECa14]
gi|323162790|gb|EFZ48627.1| transcriptional regulatory protein ompR [Escherichia coli E128010]
gi|323164967|gb|EFZ50758.1| transcriptional regulatory protein ompR [Shigella sonnei 53G]
gi|323174038|gb|EFZ59666.1| transcriptional regulatory protein ompR [Escherichia coli LT-68]
gi|323179070|gb|EFZ64644.1| transcriptional regulatory protein ompR [Escherichia coli 1180]
gi|323182865|gb|EFZ68266.1| transcriptional regulatory protein ompR [Escherichia coli 1357]
gi|323189006|gb|EFZ74290.1| transcriptional regulatory protein ompR [Escherichia coli RN587/1]
gi|323192189|gb|EFZ77421.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323196385|gb|EFZ81537.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201814|gb|EFZ86877.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206356|gb|EFZ91317.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323211949|gb|EFZ96776.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323216855|gb|EGA01578.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323222254|gb|EGA06637.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323224268|gb|EGA08557.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323228197|gb|EGA12328.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323233536|gb|EGA17629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323237002|gb|EGA21069.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323243783|gb|EGA27799.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323245975|gb|EGA29962.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323250751|gb|EGA34629.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323255762|gb|EGA39512.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323261380|gb|EGA44966.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323267647|gb|EGA51129.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323268528|gb|EGA51995.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|323376728|gb|ADX48996.1| two component transcriptional regulator, winged helix family
[Escherichia coli KO11]
gi|323934605|gb|EGB31005.1| response regulator receiver domain-containing protein [Escherichia
coli E1520]
gi|323939375|gb|EGB35586.1| response regulator receiver domain-containing protein [Escherichia
coli E482]
gi|323944373|gb|EGB40448.1| response regulator receiver domain-containing protein [Escherichia
coli H120]
gi|323950062|gb|EGB45945.1| response regulator receiver domain-containing protein [Escherichia
coli H252]
gi|323954658|gb|EGB50440.1| response regulator receiver domain-containing protein [Escherichia
coli H263]
gi|323959595|gb|EGB55247.1| response regulator receiver domain-containing protein [Escherichia
coli H489]
gi|323966218|gb|EGB61654.1| response regulator receiver domain-containing protein [Escherichia
coli M863]
gi|323970003|gb|EGB65278.1| response regulator receiver domain-containing protein [Escherichia
coli TA007]
gi|323974791|gb|EGB69903.1| response regulator receiver domain-containing protein [Escherichia
coli TW10509]
gi|324009406|gb|EGB78625.1| transcriptional regulatory protein OmpR [Escherichia coli MS 57-2]
gi|324018722|gb|EGB87941.1| transcriptional regulatory protein OmpR [Escherichia coli MS 117-3]
gi|324111717|gb|EGC05697.1| response regulator receiver domain-containing protein [Escherichia
fergusonii B253]
gi|324116400|gb|EGC10319.1| response regulator receiver domain-containing protein [Escherichia
coli E1167]
gi|325498947|gb|EGC96806.1| osmolarity response regulator [Escherichia fergusonii ECD227]
gi|326337632|gb|EGD61467.1| Two-component system response regulator OmpR [Escherichia coli
O157:H7 str. 1044]
gi|326344617|gb|EGD68366.1| Two-component system response regulator OmpR [Escherichia coli
O157:H7 str. 1125]
gi|326625242|gb|EGE31587.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
gi|326630020|gb|EGE36363.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|327251040|gb|EGE62733.1| transcriptional regulatory protein ompR [Escherichia coli STEC_7v]
gi|327395564|dbj|BAK12986.1| transcriptional regulatory protein OmpR [Pantoea ananatis AJ13355]
gi|328533820|gb|EGF60499.1| transcriptional regulatory protein OmpR [Klebsiella sp. MS 92-3]
gi|330909438|gb|EGH37952.1| two-component system response regulator OmpR [Escherichia coli
AA86]
gi|331036399|gb|EGI08625.1| transcriptional regulatory protein OmpR [Escherichia coli H736]
gi|331041701|gb|EGI13845.1| transcriptional regulatory protein OmpR [Escherichia coli M605]
gi|331046997|gb|EGI19075.1| transcriptional regulatory protein OmpR [Escherichia coli M718]
gi|331052909|gb|EGI24942.1| transcriptional regulatory protein OmpR [Escherichia coli TA206]
gi|331057520|gb|EGI29506.1| transcriptional regulatory protein OmpR [Escherichia coli TA143]
gi|331062289|gb|EGI34209.1| transcriptional regulatory protein OmpR [Escherichia coli TA271]
gi|331072641|gb|EGI43966.1| transcriptional regulatory protein OmpR [Escherichia coli H591]
gi|331077416|gb|EGI48628.1| transcriptional regulatory protein OmpR [Escherichia coli H299]
gi|332085553|gb|EGI90719.1| transcriptional regulatory protein ompR [Shigella boydii 5216-82]
gi|332085681|gb|EGI90845.1| transcriptional regulatory protein ompR [Shigella dysenteriae
155-74]
gi|332090460|gb|EGI95558.1| transcriptional regulatory protein ompR [Shigella boydii 3594-74]
gi|332104304|gb|EGJ07650.1| transcriptional regulatory protein ompR [Shigella sp. D9]
gi|332345357|gb|AEE58691.1| transcriptional regulatory protein OmpR [Escherichia coli UMNK88]
gi|332749496|gb|EGJ79913.1| transcriptional regulatory protein ompR [Shigella flexneri K-671]
gi|332750346|gb|EGJ80757.1| transcriptional regulatory protein ompR [Shigella flexneri 4343-70]
gi|332751423|gb|EGJ81826.1| transcriptional regulatory protein ompR [Shigella flexneri 2747-71]
gi|332763612|gb|EGJ93851.1| ompR [Shigella flexneri 2930-71]
gi|332990354|gb|AEF09337.1| osmolarity response regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
gi|332996407|gb|EGK16034.1| transcriptional regulatory protein ompR [Shigella flexneri VA-6]
gi|332996648|gb|EGK16273.1| transcriptional regulatory protein ompR [Shigella flexneri K-272]
gi|332997387|gb|EGK17003.1| transcriptional regulatory protein ompR [Shigella flexneri K-218]
gi|333012311|gb|EGK31692.1| transcriptional regulatory protein ompR [Shigella flexneri K-304]
gi|333013055|gb|EGK32431.1| transcriptional regulatory protein ompR [Shigella flexneri K-227]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|284050575|ref|ZP_06380785.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira platensis str. Paraca]
Length = 487
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D D R L L K GY+V +G A + L+L DI+MPEMDG +
Sbjct: 18 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 77
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D+ V+F+T + A L+KPF + + + + LT++
Sbjct: 78 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQIEEALARIQNQLTLR 137
Query: 122 N 122
+
Sbjct: 138 S 138
>gi|312200116|ref|YP_004020177.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311231452|gb|ADP84307.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G++V +G +A L+L D+++P +
Sbjct: 1 MT-RLLVVEDEESFSEALSFMLEREGFDVAVAADGHAALSDFERHGADLVLLDVMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRALRQK-SSVPVIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229189657|ref|ZP_04316672.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
10876]
gi|228593921|gb|EEK51725.1| Transcriptional regulatory protein srrA [Bacillus cereus ATCC
10876]
Length = 238
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|160940480|ref|ZP_02087825.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
BAA-613]
gi|158437060|gb|EDP14827.1| hypothetical protein CLOBOL_05370 [Clostridium bolteae ATCC
BAA-613]
Length = 226
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G+ V+ +G A D ++ +L+L D++MP+MDG
Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFAVIEAGDGEEAVDVFFAQKDIALVLLDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + + V+ +T + + + +SKPF + LV V +L N
Sbjct: 65 EVLRTIRK-YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVEAILRRTN 123
>gi|238786434|ref|ZP_04630353.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
bercovieri ATCC 43970]
gi|238712660|gb|EEQ04753.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
bercovieri ATCC 43970]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|331699682|ref|YP_004335921.1| winged helix family two component transcriptional regulator
[Pseudonocardia dioxanivorans CB1190]
gi|326954371|gb|AEA28068.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length = 260
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R + + LG AG++V +G A R P +++ D+++P + G+E
Sbjct: 33 HVLVVDDDATVRDVVARYLGAAGHDVELALDGPGALRAARTTPPDVVVLDLMLPGLGGLE 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ +T ++KPF R+LV V +L
Sbjct: 93 VCRALRADGDRPPIIMLTALGEEDDRLLGLELGADDYVTKPFSPRELVLRVGSILRR 149
>gi|315283631|ref|ZP_07871771.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria marthii FSL S4-120]
gi|313612736|gb|EFR86738.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria marthii FSL S4-120]
Length = 236
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|114569317|ref|YP_755997.1| two component transcriptional regulator [Maricaulis maris MCS10]
gi|114339779|gb|ABI65059.1| two component transcriptional regulator, winged helix family
[Maricaulis maris MCS10]
Length = 233
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DDD +R L + L + G+ V + N A + F LL+ D++MP M+G
Sbjct: 8 DAHILVVDDDDRIRNLLKRFLQERGFRVSTAPNAGKALSTLNSLAFDLLVLDVMMPGMNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + + ++ +T + L KPF +LV +N +L
Sbjct: 68 FELTEAVRKRG-ETPILLLTARGDAEDRIKGLSLGADDYLPKPFEPEELVLRINAILRR 125
>gi|90023478|ref|YP_529305.1| response regulator receiver domain-containing protein
[Saccharophagus degradans 2-40]
gi|89953078|gb|ABD83093.1| Phosphate regulon transcriptional regulatory protein phoB
[Saccharophagus degradans 2-40]
Length = 234
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R L AL A Y V+ + A+ + ++ L+L D ++P GI
Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR E+ ++ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|37680917|ref|NP_935526.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
gi|320155417|ref|YP_004187796.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
vulnificus MO6-24/O]
gi|37199667|dbj|BAC95497.1| sensory box sensor histidine kinase/response regulator [Vibrio
vulnificus YJ016]
gi|319930729|gb|ADV85593.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
vulnificus MO6-24/O]
Length = 1129
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 6 LLA-EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
L+ +D+ R L L GY V + ++G + + E +LLL DI+MP M G ++
Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + +L ++ +T + L+KPF+ ++L + L
Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840
>gi|229102179|ref|ZP_04232889.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
gi|228681249|gb|EEL35416.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-28]
Length = 238
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|227498888|ref|ZP_03929028.1| DNA-binding response regulator [Acidaminococcus sp. D21]
gi|226904340|gb|EEH90258.1| DNA-binding response regulator [Acidaminococcus sp. D21]
Length = 224
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + K L GY V NG A + V + LL+ DI+MPEMDG+
Sbjct: 2 KILVVEDEPSLNQIIAKRLKIEGYSVDQAENGRDALEFVALAEYDLLIVDILMPEMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E + + V+F+T L KPF +L+ V LL
Sbjct: 62 LVHTLREKNVTVPVLFLTALDGTEDKVKGLDAGGDDYLVKPFEFSELLARVRALLRR 118
>gi|30019625|ref|NP_831256.1| transcriptional regulatory protein resD [Bacillus cereus ATCC
14579]
gi|206967773|ref|ZP_03228729.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
gi|218234890|ref|YP_002366257.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
gi|218896505|ref|YP_002444916.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
gi|228900155|ref|ZP_04064388.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
4222]
gi|228907207|ref|ZP_04071068.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
200]
gi|228920285|ref|ZP_04083633.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228938687|ref|ZP_04101292.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228951952|ref|ZP_04114050.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228957851|ref|ZP_04119591.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228964548|ref|ZP_04125658.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228971569|ref|ZP_04132193.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978180|ref|ZP_04138558.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
Bt407]
gi|229016833|ref|ZP_04173761.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
gi|229023038|ref|ZP_04179553.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
gi|229043317|ref|ZP_04191037.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
gi|229069128|ref|ZP_04202420.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
gi|229078758|ref|ZP_04211312.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
gi|229109030|ref|ZP_04238631.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
gi|229126890|ref|ZP_04255902.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
gi|229144175|ref|ZP_04272589.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
gi|229149774|ref|ZP_04278004.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
gi|229177983|ref|ZP_04305355.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
gi|296502146|ref|YP_003663846.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
gi|29895169|gb|AAP08457.1| Transcriptional regulatory protein resD [Bacillus cereus ATCC
14579]
gi|89212828|gb|ABD63914.1| transcriptional regulatory protein ResD [Bacillus cereus]
gi|206736693|gb|EDZ53840.1| DNA-binding response regulator ResD [Bacillus cereus AH1134]
gi|218162847|gb|ACK62839.1| DNA-binding response regulator ResD [Bacillus cereus B4264]
gi|218544434|gb|ACK96828.1| DNA-binding response regulator ResD [Bacillus cereus G9842]
gi|228605471|gb|EEK62920.1| Transcriptional regulatory protein srrA [Bacillus cereus 172560W]
gi|228633805|gb|EEK90404.1| Transcriptional regulatory protein srrA [Bacillus cereus m1550]
gi|228639183|gb|EEK95599.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-ST24]
gi|228656830|gb|EEL12656.1| Transcriptional regulatory protein srrA [Bacillus cereus BDRD-Cer4]
gi|228674499|gb|EEL29742.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-15]
gi|228704631|gb|EEL57063.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-2]
gi|228714073|gb|EEL65956.1| Transcriptional regulatory protein srrA [Bacillus cereus F65185]
gi|228726031|gb|EEL77268.1| Transcriptional regulatory protein srrA [Bacillus cereus AH676]
gi|228738261|gb|EEL88742.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1272]
gi|228744394|gb|EEL94468.1| Transcriptional regulatory protein srrA [Bacillus cereus AH1273]
gi|228781652|gb|EEM29852.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
Bt407]
gi|228788228|gb|EEM36183.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228795148|gb|EEM42644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228801767|gb|EEM48644.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228807875|gb|EEM54396.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228821063|gb|EEM67083.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228839484|gb|EEM84777.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228852428|gb|EEM97221.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
200]
gi|228859561|gb|EEN03988.1| Transcriptional regulatory protein srrA [Bacillus thuringiensis IBL
4222]
gi|296323198|gb|ADH06126.1| transcriptional regulatory protein [Bacillus thuringiensis BMB171]
gi|326939195|gb|AEA15091.1| transcriptional regulatory protein resD [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 238
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|194333603|ref|YP_002015463.1| winged helix family two component transcriptional regulator
[Prosthecochloris aestuarii DSM 271]
gi|194311421|gb|ACF45816.1| two component transcriptional regulator, winged helix family
[Prosthecochloris aestuarii DSM 271]
Length = 236
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + L L KAGY+ +G A D ++ + + ++L DI++P MDG E+
Sbjct: 6 ILVVEDDHNLAKLLKYNLEKAGYKCQHALSGEEALDLLKSKSYDIMLLDIMLPGMDGFEV 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ +L DL ++ +T + KPF R+L + +L
Sbjct: 66 CRKVRQHQLYKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123
>gi|108803229|ref|YP_643166.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108764472|gb|ABG03354.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 234
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
++L+ EDD +R + L + G E + +G +A + + +PF L+L D+++P MDGI
Sbjct: 3 RVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMDGI 62
Query: 63 ELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R E + V+ +T ++KPF R L + V L
Sbjct: 63 SVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQLR 122
Query: 120 IK 121
+
Sbjct: 123 RQ 124
>gi|15599577|ref|NP_253071.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|107100035|ref|ZP_01363953.1| hypothetical protein PaerPA_01001056 [Pseudomonas aeruginosa PACS2]
gi|116052415|ref|YP_792726.1| putative two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218893472|ref|YP_002442341.1| putative two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|254238956|ref|ZP_04932279.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
gi|254244809|ref|ZP_04938131.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
gi|296391088|ref|ZP_06880563.1| putative two-component response regulator [Pseudomonas aeruginosa
PAb1]
gi|313106911|ref|ZP_07793114.1| putative DNA-binding response regulator ColR [Pseudomonas
aeruginosa 39016]
gi|9950611|gb|AAG07769.1|AE004854_5 probable two-component response regulator [Pseudomonas aeruginosa
PAO1]
gi|115587636|gb|ABJ13651.1| putative DNA-binding response regulator ColR [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126170887|gb|EAZ56398.1| hypothetical protein PACG_05126 [Pseudomonas aeruginosa C3719]
gi|126198187|gb|EAZ62250.1| hypothetical protein PA2G_05681 [Pseudomonas aeruginosa 2192]
gi|218773700|emb|CAW29514.1| probable two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|310879616|gb|EFQ38210.1| putative DNA-binding response regulator ColR [Pseudomonas
aeruginosa 39016]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ L L GY V +G S E + L++ D+++P +DG
Sbjct: 2 RILVVEDNRDILANLADYLSLKGYTVDCAQDGLSGLHLAATEHYDLIVLDVMLPGIDGYA 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCRRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLVKPFALSELSARIEAVLRR 119
>gi|302342093|ref|YP_003806622.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfarculus baarsii DSM 2075]
gi|301638706|gb|ADK84028.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfarculus baarsii DSM 2075]
Length = 518
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D+ + + G E +S ++GA+A + R E L+L D++MP M+G
Sbjct: 11 KARILIVDDEPINIEIMSELFSLHGAETISASDGATALELARREMPDLVLLDVMMPGMNG 70
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR E+ L V+ +TG + LSKP H+ +LV LL
Sbjct: 71 YEVCRRLKADEVTRRLPVVMVTGLGQIDDKIKGLEAGADDFLSKPVHMAELVTRTRSLLR 130
Query: 120 IK 121
+K
Sbjct: 131 VK 132
>gi|291541902|emb|CBL15012.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus bromii
L2-63]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ +R+ + K G+EV +G A + R+E F L++ D++MPE+D
Sbjct: 1 MS-RILVVDDEARIRQIIRKYAEFEGFEVEEAVDGMQAIEICRKEDFDLIIMDVMMPELD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G R + ++ ++ + + KPF ++L+ VN ++
Sbjct: 60 GFSACREIRK-FKKTPIIMLSARGEEYDKIHGFELGSDDYVVKPFSPKELMMRVNAVIKR 118
>gi|227536214|ref|ZP_03966263.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
gi|300772173|ref|ZP_07082043.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|227244111|gb|EEI94126.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
gi|300760476|gb|EFK57302.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 234
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+ILL ED++ + + L GY V + +G A +EE F+L++ D+++PE+DG
Sbjct: 4 KQRILLVEDEEHLLEAIKLNLELEGYRVTTATDGKKALKVFKEERFNLIILDVMIPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++A + ++ +MF+T + L KPF+L +L+ V L+
Sbjct: 64 FQVAETIRLQNSEVPIMFLTAKNSSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122
>gi|91216473|ref|ZP_01253439.1| two-component system, transcriptional regulatory protein
[Psychroflexus torquis ATCC 700755]
gi|91185267|gb|EAS71644.1| two-component system, transcriptional regulatory protein
[Psychroflexus torquis ATCC 700755]
Length = 240
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y+V NG ++K ++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNSYDVTHAKNGMEGFEKFKKGNYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ + D+ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIRAKNEDIPIIFLTAKAMKDDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124
Query: 122 N 122
N
Sbjct: 125 N 125
>gi|27365036|ref|NP_760564.1| chitin catabolic cascade sensor histidine kinase chiS [Vibrio
vulnificus CMCP6]
gi|27361182|gb|AAO10091.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
vulnificus CMCP6]
Length = 1129
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 3/116 (2%)
Query: 6 LLA-EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
L+ +D+ R L L GY V + ++G + + E +LLL DI+MP M G ++
Sbjct: 725 LIVADDEPVNLRVLESFLRIEGYRVQTASDGPDTLELIEHEKPALLLLDIMMPGMSGYQV 784
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + +L ++ +T + L+KPF+ ++L + L
Sbjct: 785 CHQLRQQYDMAELPIIMLTALSQSEDRVRGFEAGANDYLTKPFNKQELAARIKAHL 840
>gi|49081852|gb|AAT50326.1| PA5360 [synthetic construct]
Length = 230
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P GI
Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLGVGADDYITKPFSPRELVARLKAVLRR 123
>gi|332711236|ref|ZP_08431169.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
gi|332350050|gb|EGJ29657.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
Length = 224
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L + GY V NGAS + + LL+ D ++P + G+E
Sbjct: 2 RILLVDDEIELTDPLSRVLTREGYTVDVAYNGASGNELACVGAYDLLILDWMLPHISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ D V+F+T V L KPF LR+L+ V LL
Sbjct: 62 ICQQMRSHDATTPVLFLTAKDTVDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|291566271|dbj|BAI88543.1| adenylate cyclase [Arthrospira platensis NIES-39]
Length = 438
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ILL +D+ L L GY +G+ A + + L+L D++MP
Sbjct: 1 MSETKLHILLVDDEPANLVLLEDLLMAEGYNTTLAESGSRAIEIAQNHRPDLVLLDVMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+M+G E+ R E + ++F+T ++KPF+++ L+ ++
Sbjct: 61 DMNGFEVCDRLRENPILQTTPIIFLTALDDEESRLMGLQTMGDDYITKPFNIKLLLAKIQ 120
Query: 116 RLLTI 120
+L +
Sbjct: 121 NILKL 125
>gi|56461211|ref|YP_156492.1| positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
loihiensis L2TR]
gi|56180221|gb|AAV82943.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
loihiensis L2TR]
Length = 228
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L + + GY+ V N+ +A DK+ E ++L D ++P
Sbjct: 1 MSRRILIVEDEAPIREMLSFVMEQHGYQAVEANDFDAAVDKIAEPYPDMVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LA++ + ++ ++ +T ++KPF ++L+ + +
Sbjct: 61 GLQLAKKIKGDDFTRNIPIIMLTARGEEEDKVKGLEVGADDYITKPFSPKELMARMRAVF 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|238795585|ref|ZP_04639100.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
mollaretii ATCC 43969]
gi|238720704|gb|EEQ12505.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
mollaretii ATCC 43969]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|319939370|ref|ZP_08013730.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
gi|319811356|gb|EFW07651.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV]
Length = 233
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ +G A + E +L+ D+++PEMDG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V +L
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118
>gi|304395459|ref|ZP_07377342.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|304356753|gb|EFM21117.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + Y+ + + SA ++ E L+L D ++P
Sbjct: 1 MAKRILVVEDEAPIREMLCFVLEQNDYQPIEAEDYDSAVGRLIEPWPDLILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ VM +T ++KPF ++L+ + ++
Sbjct: 61 GIQFIKHLKREAMTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELMARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323527545|ref|YP_004229698.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323384547|gb|ADX56638.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 246
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|227484933|ref|ZP_03915249.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
gi|227237088|gb|EEI87103.1| response regulator [Anaerococcus lactolyticus ATCC 51172]
Length = 231
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+D +R+F+ L GY+ V +G A EE ++ + DI++P +
Sbjct: 1 MNNKILILDDEDPIRQFMKINLDYQGYQTVEAASGEEALRIFDEEQPAVAILDIMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P ++ ++ + + KPF+ ++L+ V L+
Sbjct: 61 GFEVCEKIRTKSPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRVKSLMRR 120
Query: 121 KN 122
N
Sbjct: 121 VN 122
>gi|158340654|ref|YP_001521822.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158310895|gb|ABW32508.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 247
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +RR L L GY V + +G A + + L++ D++MP +DG +
Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + ++ +T + V + KPF ++L + V ++
Sbjct: 75 CRAIRK-TSRVPIIMLTALSEVGDRVTGLEMGADDYMVKPFSPKELESRVRCIIRR 129
>gi|15896754|ref|NP_350103.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15026610|gb|AAK81443.1|AE007848_7 Response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Clostridium acetobutylicum ATCC
824]
gi|325510923|gb|ADZ22559.1| Response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Clostridium acetobutylicum EA 2018]
Length = 230
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD D+ + + K+L G+E++S +G A ++E ++ DI+MP MD
Sbjct: 1 MQKKILVVDDDRDIVKLITKSLSYEGFEMISAYSGKEALCALKENHIDFIILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+++ R + ++ ++F++ ++KPF +++L + +
Sbjct: 61 GLDVCRSIRKSY-NVPILFLSARDKDIDKIVGLEIGADDYMAKPFSIQELTSRIRA 115
>gi|332885785|gb|EGK06031.1| hypothetical protein HMPREF9456_02295 [Dysgonomonas mossii DSM
22836]
Length = 229
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + L K L + GY V +G V + L++TD+++P ++G
Sbjct: 2 KKILVVEDELRIAELLKKGLEEFGYIVTLAFDGEMGKRLVNNHIYDLIITDVILPHINGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
EL + + P++ ++ +T D + KPF LR+L ++ LL KN
Sbjct: 62 ELCKEIRAVHPEIPIIMLTALGTTDDKLDGFDSGADDYMVKPFDLRELNARISILLKRKN 121
>gi|238752749|ref|ZP_04614218.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
rohdei ATCC 43380]
gi|238709007|gb|EEQ01256.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
rohdei ATCC 43380]
Length = 239
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPYPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|187777143|ref|ZP_02993616.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
15579]
gi|187774071|gb|EDU37873.1| hypothetical protein CLOSPO_00688 [Clostridium sporogenes ATCC
15579]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD ++ + L GY+V + +NG A + + + + L++ DI+MP++D
Sbjct: 1 MKEKILVVDDDITIKNLIEVYLKSEGYDVDNASNGEEALNLIGDYNYDLVILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E + ++F++ +SKPF +L+ V L
Sbjct: 61 GILTCIKIREKF-TMPIIFLSAKGEELDKIQGLTVGADDYISKPFGSMELLARVKAQLRR 119
>gi|170695738|ref|ZP_02886880.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170139343|gb|EDT07529.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 246
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|157363849|ref|YP_001470616.1| two component transcriptional regulator [Thermotoga lettingae TMO]
gi|157314453|gb|ABV33552.1| two component transcriptional regulator, winged helix family
[Thermotoga lettingae TMO]
Length = 263
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L + GY+V+ + A V E + + DI++P MDG
Sbjct: 27 KKKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDG 86
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R+ E + V+F++ ++KPF +R+++ + +
Sbjct: 87 FELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFR 146
Query: 120 I 120
Sbjct: 147 R 147
>gi|307152410|ref|YP_003887794.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7822]
gi|306982638|gb|ADN14519.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7822]
Length = 1382
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +I+LA+D+ DMR ++ + L K Y+V + +G +A + +R P L+LTD++MP+++G
Sbjct: 628 NARIILADDNADMREYVKRLLNKL-YQVEAVGDGMAALEAIRRHPPDLVLTDVMMPQLNG 686
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ L +L ++ ++ A ++ L KPF R+L+ + L
Sbjct: 687 FELLQQLRSNPLTQELPIILLSARAGEEYLVEALEAGADDYLVKPFSARELLVRIEANLK 746
Query: 120 I 120
+
Sbjct: 747 M 747
>gi|160947611|ref|ZP_02094778.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
gi|158446745|gb|EDP23740.1| hypothetical protein PEPMIC_01546 [Parvimonas micra ATCC 33270]
Length = 227
Score = 151 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL ED++++R F L + G+EV+ +G + + +++ D+++P +D
Sbjct: 1 MS-KILLVEDEENIRLFTKINLEREGFEVLEAESGEIGVELALKYNPQVVILDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E P + ++ +T + LSKPF+ +L+ + L+
Sbjct: 60 GFEVCKILREKLPKIGIIMLTAKTQDVDRINGLESGTDDYLSKPFNPVELILRIKSLIRR 119
>gi|319951282|ref|ZP_08025117.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
gi|319435055|gb|EFV90340.1| DNA-binding response regulator PhoP [Dietzia cinnamea P4]
Length = 225
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++++ L +L G+EV + GA A DK R ++ D++MP MDG +
Sbjct: 2 LVVDDEENIVELLSVSLKFQGFEVATARTGAEAIDKARTFRPDAVILDVMMPVMDGFDAV 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R D V+F+T AV ++KPF L ++V + +L
Sbjct: 62 KRLRADGCDAPVLFLTARDAVEDRVAGLTLGADDYVTKPFSLEEVVARLRTILRR 116
>gi|300868153|ref|ZP_07112786.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300333856|emb|CBN57966.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1175
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ + L+ L Y V + ++G ++ + L+L D+ +P++DGI
Sbjct: 2 KILVVEDDELTAQALVATLASQNYTVETASDGQEGWELTEAFAYDLILLDVTLPKLDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + ++ +T + KPF +L + LL
Sbjct: 62 LCQRLRSQGHQMPILLLTARNTSHDKALGLDAGADDYVVKPFEPEELAARIRALLRR 118
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++ +DD M + L G ++++ + ++ + LL+ DI MP++ G
Sbjct: 511 KARVMVVDDDPKMLAIVRSLLEPWGLKIIALADPRQFWELLETTSPDLLILDIEMPQISG 570
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + L ++F+T + + +SKP +LV + L
Sbjct: 571 TELCQIVRNDSSWSSLPILFLTAHSDAESINQVFSVGADDFVSKPIVGPELVTRIINRLE 630
Query: 120 I 120
Sbjct: 631 R 631
Score = 51.7 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 8/118 (6%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-----D 60
L+ + D + + LI G+++ N A +K+ + L+L + P + +
Sbjct: 390 LIVDRDRSLAKKLIAEATTWGFDLEVATNLTIARNKIGLKSPDLVLLE---PAIFPTAAE 446
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L + P + + T + + L K +++ +N++L
Sbjct: 447 SLTLLAELKKHAPPIPAIIFTERDDLTTRLEVARLGEHTFLPKSVPPSQILDAINQVL 504
>gi|255020263|ref|ZP_05292332.1| Two-component system response regulator OmpR [Acidithiobacillus
caldus ATCC 51756]
gi|254970405|gb|EET27898.1| Two-component system response regulator OmpR [Acidithiobacillus
caldus ATCC 51756]
Length = 240
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +ILL +DD +R L++ L + V + A + E F LLL D++MP
Sbjct: 1 MAKARILLVDDDPRLRSILLRYLEMQDFSVCGVASTALMDRMLEREFFDLLLLDVMMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E R +P L ++ +T + + L+KPF +LV + +L
Sbjct: 61 DGFEACARLRRQEPQLPIIMLTARGDLDDRVQGLSLGADDYLAKPFEPEELVARIRAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|229196205|ref|ZP_04322954.1| DNA-binding response regulator [Bacillus cereus m1293]
gi|228587270|gb|EEK45339.1| DNA-binding response regulator [Bacillus cereus m1293]
Length = 225
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MLPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|268593356|ref|ZP_06127577.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
1131]
gi|291311053|gb|EFE51506.1| transcriptional regulatory protein CpxR [Providencia rettgeri DSM
1131]
Length = 232
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A ++ LLL D++MP+ +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQIDS-SIDLLLLDVMMPKKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + ++ V+ +T + L KPF+ R+LV + LL N
Sbjct: 61 ETLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119
>gi|126656902|ref|ZP_01728080.1| two-component system response regulator [Cyanothece sp. CCY0110]
gi|126621740|gb|EAZ92449.1| two-component system response regulator [Cyanothece sp. CCY0110]
Length = 223
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L L GY+V +NG Y+ + + LL+ D ++P G+
Sbjct: 2 KILLVDDEAELTEPLYHVLSHEGYDVDVADNGQKGYELALQNNYDLLILDWMLPGKPGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQELRSQGQNTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRR 118
>gi|219668265|ref|YP_002458700.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219538525|gb|ACL20264.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 226
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q IL+ ED++ + RF+ LG GY V +G + + F L+L D+++P+++
Sbjct: 1 MSQTILIIEDEEKIARFVELELGYEGYTVTKAFDGRTGLELAETGRFDLILLDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ RR + ++ +T +V ++KPF + +L+ + L
Sbjct: 61 GTEVLRRIR-RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALR 118
>gi|169349708|ref|ZP_02866646.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
gi|169293783|gb|EDS75916.1| hypothetical protein CLOSPI_00446 [Clostridium spiroforme DSM 1552]
Length = 229
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + + L Y + G A + +++ + L + D++MP++D
Sbjct: 1 MAYNILVVDDEQSIADLIELYLQNENYHIFKYYCGKDALESLQKNHYDLAILDVMMPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ + V+ +T + + L+KPF+ +L V L
Sbjct: 61 GFSLLKKIRKHYY-FPVIMLTAKSNDLDKINGLTLGADDYLTKPFNPLELAARVKTQLRR 119
>gi|327439728|dbj|BAK16093.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 234
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + R L LG GYE N G K E+ + L+L D+++PE++
Sbjct: 1 MS-KILIVEDEQQIARVLQLELGFEGYETTIANTGTDGLLKFHEDEYDLVLLDVMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ +R + + + V+ +T + + ++KPF +L+ + L
Sbjct: 60 GLEVLKRIRKHNETVPVLLLTAKSNIEDKVTGLDYGANDYITKPFEFDELLARIRVALR 118
>gi|319652093|ref|ZP_08006213.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
gi|317396241|gb|EFV76959.1| hypothetical protein HMPREF1013_02825 [Bacillus sp. 2_A_57_CT2]
Length = 228
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+AED+ + R L L + G+EV++ +G SA +K L++ DI+MP MDG
Sbjct: 2 KKILVAEDELAISRVLSAYLQREGFEVLTAYDGTSALEKFFSHSPQLVILDIMMPGMDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E V+ +T + +SKPF +++ VN +L
Sbjct: 62 SVLEKIREK-SACPVIMLTALGDIDYKLKGLNTGADDYISKPFIGDEVIARVNAVLRR 118
>gi|300864882|ref|ZP_07109729.1| two component LuxR family transcriptional regulator [Oscillatoria
sp. PCC 6506]
gi|300337124|emb|CBN54879.1| two component LuxR family transcriptional regulator [Oscillatoria
sp. PCC 6506]
Length = 234
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + L + + V +NG ++ +++ P L+++DI+MP++D
Sbjct: 5 MSARLLLVDDEPGLREAVQAYLEDSNFNVDVASNGREGWELLQKNPPDLVISDIMMPQVD 64
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + E + V+F+T +SKPF +LV V LL
Sbjct: 65 GYQFLSQMREDPRFKAMPVVFLTAKGMTTDRIQGYQAGCDAYISKPFDPDELVAIVTNLL 124
Query: 119 TIK 121
+
Sbjct: 125 VRR 127
>gi|228985103|ref|ZP_04145270.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229155589|ref|ZP_04283697.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 4342]
gi|228627907|gb|EEK84626.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 4342]
gi|228774590|gb|EEM22989.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 232
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|302338212|ref|YP_003803418.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301635397|gb|ADK80824.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 232
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ D+ L L + GY V++ G +A + L++ D+++P +DG+
Sbjct: 4 ETILVVDDEHDILELLKYNLEREGYSVITVETGEAAAATAAAKQPDLIILDLMLPGIDGV 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + D+ ++ +T + + ++KPF + LV + LL
Sbjct: 64 EVCKRIRSREEVKDIPIIMLTAKSEDSDVISGLEVGADDYMTKPFSPKVLVARIRALLRR 123
Query: 121 K 121
K
Sbjct: 124 K 124
>gi|300714679|ref|YP_003739482.1| two-component response regulator [Erwinia billingiae Eb661]
gi|299060515|emb|CAX57622.1| Two-component response regulator [Erwinia billingiae Eb661]
Length = 232
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G++V+ +G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFDVLVAGDGEQALTLI-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|269123509|ref|YP_003306086.1| two component transcriptional regulator, winged helix family
[Streptobacillus moniliformis DSM 12112]
gi|268314835|gb|ACZ01209.1| two component transcriptional regulator, winged helix family
[Streptobacillus moniliformis DSM 12112]
Length = 224
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R + L G+++ N+G + F L+L D+++P+M+
Sbjct: 1 MKEKILIIEDDVKIARIIEVELKFEGFDIQIENDGKEGLLAAKYNHFDLILLDVMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E D D+ ++F+T + S ++KPF +L+ V LL
Sbjct: 61 GFEVCKRIRE-DSDVPIIFLTAKDQITDKVISFDYGADDYITKPFSNEELIARVKALLRR 119
>gi|228933303|ref|ZP_04096159.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228826464|gb|EEM72241.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 232
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|325475644|gb|EGC78820.1| sensor histidine kinase/response regulator [Treponema denticola
F0402]
Length = 228
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ EDD+ + FL L GY V+ +G +A + + +LL DI++P+++
Sbjct: 1 MN-KVLIVEDDEGIADFLRFELEHEGYGVLHAADGRTALELFESDTPDILLLDIMLPQLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + V+ +T L+KPF + +L+ + ++
Sbjct: 60 GLEVLRRIRK-TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIEELLARMRAVIRR 118
>gi|320539825|ref|ZP_08039484.1| putative DNA-binding response regulator in two-component regulatory
system with EnvZ [Serratia symbiotica str. Tucson]
gi|320030011|gb|EFW12031.1| putative DNA-binding response regulator in two-component regulatory
system with EnvZ [Serratia symbiotica str. Tucson]
Length = 239
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYILKPFNPRELLARIRAVLRRQ 123
>gi|86741097|ref|YP_481497.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86567959|gb|ABD11768.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 283
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ L + L + GY V +GA A + E + ++ D+++P +DG
Sbjct: 29 SMRVLVVEDEARTAALLRRGLVEEGYAVDVVGDGADAVWQATEIGYDAIVLDLMLPGLDG 88
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E V+ +T V L KPF +L + L+
Sbjct: 89 FEVCRRLREAGRWAPVLMLTARGDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 147
>gi|170767150|ref|ZP_02901603.1| transcriptional regulatory protein OmpR [Escherichia albertii
TW07627]
gi|251787894|ref|YP_003002615.1| osmolarity response regulator [Dickeya zeae Ech1591]
gi|271502326|ref|YP_003335352.1| winged helix family two component transcriptional regulator
[Dickeya dadantii Ech586]
gi|170124588|gb|EDS93519.1| transcriptional regulatory protein OmpR [Escherichia albertii
TW07627]
gi|247536515|gb|ACT05136.1| two component transcriptional regulator, winged helix family
[Dickeya zeae Ech1591]
gi|270345881|gb|ACZ78646.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech586]
Length = 239
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|158341219|ref|YP_001522417.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158311460|gb|ABW33071.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 247
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +RR L L GY V + +G A + + L++ D++MP +DG +
Sbjct: 15 ILVVDDEGPIRRILDTRLSMMGYHVFTAADGVEALEIFDRQHPDLIVLDVMMPRLDGYGV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + ++ +T + V + KPF ++L + V ++
Sbjct: 75 CRAIRK-TSRVPIIMLTALSEVGDRITGLEMGADDYMVKPFSPKELESRVRCIIRR 129
>gi|85060297|ref|YP_455999.1| osmolarity response regulator [Sodalis glossinidius str.
'morsitans']
gi|304397823|ref|ZP_07379699.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|308188419|ref|YP_003932550.1| Two-component response regulator ompR [Pantoea vagans C9-1]
gi|84780817|dbj|BAE75594.1| two-component regulatory protein [Sodalis glossinidius str.
'morsitans']
gi|304354534|gb|EFM18905.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|308058929|gb|ADO11101.1| Two-component response regulator ompR [Pantoea vagans C9-1]
Length = 239
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|148550428|ref|YP_001270530.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|167036353|ref|YP_001671584.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|325275137|ref|ZP_08141111.1| winged helix family two component transcriptional regulator
[Pseudomonas sp. TJI-51]
gi|148514486|gb|ABQ81346.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
gi|166862841|gb|ABZ01249.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
gi|313501293|gb|ADR62659.1| PhoB [Pseudomonas putida BIRD-1]
gi|324099745|gb|EGB97617.1| winged helix family two component transcriptional regulator
[Pseudomonas sp. TJI-51]
Length = 229
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GI
Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|332665274|ref|YP_004448062.1| winged helix family two component transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
gi|332334088|gb|AEE51189.1| two component transcriptional regulator, winged helix family
[Haliscomenobacter hydrossis DSM 1100]
Length = 239
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +ILL EDD + L L Y+V +G + ++ + L + D++MP+ DG
Sbjct: 3 NNRILLVEDDQNFGDVLRSYLEMHDYDVTLAKDGVEGLESYKKGHYDLCIFDVMMPKKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR E D ++ ++F+T + +SKPF+ +L+ ++ +L
Sbjct: 63 FTLAREIREKDREMPIVFLTAKTMKDDVLEGFRIGADDYISKPFNSEELLFRIHAILKR 121
>gi|310779288|ref|YP_003967621.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
gi|309748611|gb|ADO83273.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
Length = 217
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ MRR + L K GY V +G A + +E + L++ DI++P+MDG
Sbjct: 2 KKILVVEDEWKMRRLIKDYLVKEGYHVDEAGDGMQALEMFQEGGYDLVILDIMLPKMDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + + + ++KPF+ R LV + +
Sbjct: 62 SVCREIRRE-SMVPVIMLTARSEENDQIFGFELEADEYITKPFNPRLLVARIKAIFRR 118
>gi|297567022|ref|YP_003685994.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296851471|gb|ADH64486.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 227
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY +G + + RE +L++ D+++P MDGIE+
Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFRETNPNLVVLDLMLPVMDGIEV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ ++ +T V + L KPF + +L+ + L
Sbjct: 69 ARRIRK-TSNVPILILTAKDRVEDKVEGLDAGADDYLVKPFSIEELLARIRAHLRR 123
>gi|156936433|ref|YP_001440349.1| osmolarity response regulator [Cronobacter sakazakii ATCC BAA-894]
gi|156534687|gb|ABU79513.1| hypothetical protein ESA_04334 [Cronobacter sakazakii ATCC BAA-894]
Length = 252
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 17 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 76
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 77 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 136
>gi|78222505|ref|YP_384252.1| two component transcriptional regulator [Geobacter metallireducens
GS-15]
gi|78193760|gb|ABB31527.1| two component transcriptional regulator, winged helix family
[Geobacter metallireducens GS-15]
Length = 240
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + ILL ED+ + R + L GY V +G A +++ + F+L++ D+++P
Sbjct: 1 MTEEKPHILLVEDEMHLARGICFNLEMEGYRVSHVESGEEALERLAYDRFALIILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG + R +D + V+ +T + L+KPF L + + V +
Sbjct: 61 GMDGFAVCERIRTMDSRVPVLILTARSDEGARVTGLQSGADDYLTKPFSLNEFLLRVGGM 120
Query: 118 LTIKN 122
L +
Sbjct: 121 LRRSS 125
>gi|87301909|ref|ZP_01084743.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
gi|87283477|gb|EAQ75432.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
Length = 234
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 6/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP------FSLLLTDIVMP 57
++L+ +DDD +R L +ALG+ G+EV +G A ++ F L+L D+++P
Sbjct: 3 RLLIVDDDDGIRTTLEEALGQEGFEVACAADGRQAIQQIDASQRQGSASFDLVLLDLMLP 62
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G+++ R DP ++ ++ L KPF LR+LV L
Sbjct: 63 GVGGLDVCRHLRRSDPHTPILMVSARDTETDRVLGLELGADDYLVKPFGLRELVARCRAL 122
Query: 118 LTI 120
L
Sbjct: 123 LRR 125
>gi|238795237|ref|ZP_04638821.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
intermedia ATCC 29909]
gi|238725430|gb|EEQ17000.1| Phosphate regulon transcriptional regulatory protein phoB [Yersinia
intermedia ATCC 29909]
Length = 239
Score = 151 bits (384), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + SA ++ E L+L D ++P
Sbjct: 11 MARRILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVTRLSEPFPDLVLLDWMLPGGS 70
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 71 GIQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|325846727|ref|ZP_08169642.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481485|gb|EGC84526.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+D +R+F+ L AG+++V G A EE S+ + DI++P +
Sbjct: 1 MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P + ++ ++ + + KPF+ ++L+ V LL
Sbjct: 61 GYEVCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRR 120
Query: 121 KN 122
N
Sbjct: 121 VN 122
>gi|322389965|ref|ZP_08063505.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
903]
gi|321143401|gb|EFX38839.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
903]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEV++ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|318042450|ref|ZP_07974406.1| OmpR subfamily protein [Synechococcus sp. CB0101]
Length = 240
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58
M +ILL ED+ D+ L+ L + G+ V C++G SA+ + + + L L D ++P+
Sbjct: 1 MPLRILLVEDEPDLAEALVALLEQQGHVVDHCSDGLSAWTLLSGDLARYDLALVDWMLPQ 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G+EL RR + V+ +T A + LSKPF + +L+ V L
Sbjct: 61 LSGVELCRRLRAAGFTVPVLLLTARDGTADRVEGLDAGADDYLSKPFAMEELLARVRA-L 119
Query: 119 TIKN 122
++
Sbjct: 120 QRRH 123
>gi|229062506|ref|ZP_04199819.1| Two-component response regulator [Bacillus cereus AH603]
gi|228716789|gb|EEL68480.1| Two-component response regulator [Bacillus cereus AH603]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKRILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|188532256|ref|YP_001906053.1| DNA-binding transcriptional regulator CpxR [Erwinia tasmaniensis
Et1/99]
gi|188027298|emb|CAO95141.1| Two-component response regulator [Erwinia tasmaniensis Et1/99]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ V+ +G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALALL-DNTVDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|290510605|ref|ZP_06549975.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
gi|289777321|gb|EFD85319.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
Length = 238
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDDDD+ L L GY++V +G A ++ ++ + ++ D+++P +D
Sbjct: 1 MAKTILLVEDDDDIATLLRLNLQDEGYQIVHEADGDQALVQLEKQVWDAVILDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ + L+KPF L +L+ V L
Sbjct: 61 GLEICRRIRQMTRYLPVIIISARTSEMHRVLGLEMGADDYLAKPFSLLELIARVKALFRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|197283966|ref|YP_002149838.1| phosphate regulon transcriptional regulator [Proteus mirabilis
HI4320]
gi|194681453|emb|CAR40291.1| phosphate regulon transcriptional regulator (two-component response
regulator) [Proteus mirabilis HI4320]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + + +A + + L+L D ++P
Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ ++ + D+ ++ +T + KPF ++LV V +L
Sbjct: 61 GIQVIKQMKRENNTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|270308315|ref|YP_003330373.1| two-component system, OmpR family, response regulator
[Dehalococcoides sp. VS]
gi|270154207|gb|ACZ62045.1| two-component system, OmpR family, response regulator
[Dehalococcoides sp. VS]
Length = 227
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+A+D+ + L L + G+ VV +G +A K EE L++ D+++PE+
Sbjct: 1 MTKQILIADDEKRIAEILQAYLEREGFMVVVTYDGKTALAKFHEENPDLIILDLMLPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + ++ +T + ++KPF ++LV V L
Sbjct: 61 GWDVCREIRKE-SRVPIIMLTARDELTDKLIGLEIGADDYMTKPFEAKELVARVKAQLRR 119
>gi|326384016|ref|ZP_08205699.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
gi|326197176|gb|EGD54367.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D++++R L +L GYEVV+ +G A D VR +L+ D++MP MDG
Sbjct: 9 KVLVVDDEENIRELLSVSLKFQGYEVVAAADGPRALDVVRTFKPDILVLDVMMPGMDGFG 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D +F++ +V + ++KPF L ++V + LL
Sbjct: 69 LLRRLRADGIDAPALFLSARDSVEDKVNGLTIGGDDYVTKPFSLEEVVARLAVLLRR 125
>gi|289642155|ref|ZP_06474306.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289508001|gb|EFD28949.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 226
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G++V +G +A + L+L D+++P +
Sbjct: 1 MT-RLLVVEDEESFSDALSFMLEREGFDVAVAADGLAALTEFERHGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRALRQR-STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|260891424|ref|ZP_05902687.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
F0254]
gi|260858807|gb|EEX73307.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
F0254]
Length = 200
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ D+ + + L K GY V S +G A D + + L++ DI+MP++DG E
Sbjct: 2 KILLAEDEVDLNNVVTRYLKKNGYSVDSVLDGEEALDYLEYSEYDLVILDIMMPKVDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + + KPF +L+ + ++ K
Sbjct: 62 VIKKLRDKGNHTSVLMLTARDSADDKVKGLDLGADDYIVKPFDFNELLARIRAVVRRK 119
>gi|220909984|ref|YP_002485295.1| two component LuxR family transcriptional regulator [Cyanothece sp.
PCC 7425]
gi|219866595|gb|ACL46934.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7425]
Length = 226
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL +D+ +R + L +G+ V + N + ++ ++++ L++TDI+MP++D
Sbjct: 1 MSAHLLLVDDEPGLREAVQAYLEDSGFSVAAAPNAQAGWELLQQQTPDLVITDIMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ + L V+F+T + L+KPF +LV V +L
Sbjct: 61 GYQFLQQLRDDPRYSRLPVVFLTARGMTKDRIQGHNAGVDAYLAKPFDPDELVAIVKNIL 120
Query: 119 TIK 121
+
Sbjct: 121 RQR 123
>gi|149189237|ref|ZP_01867524.1| osmolarity response regulator [Vibrio shilonii AK1]
gi|148836991|gb|EDL53941.1| osmolarity response regulator [Vibrio shilonii AK1]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|328951186|ref|YP_004368521.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
gi|328451510|gb|AEB12411.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
Length = 224
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+ RF+ L GY +G + K RE +L++ D+++P MDG+E+
Sbjct: 6 VLIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSKFRETSPNLVILDLMLPVMDGLEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ ++ +T AV + L KPF + +L+ V L
Sbjct: 66 ARRIRK-TSNVPILILTAKDAVTDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120
>gi|304408275|ref|ZP_07389923.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342744|gb|EFM08590.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 242
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD+ +R+ + L K GY V +G A++ + P L + D+++P MDG EL
Sbjct: 8 IAVVDDDEAIRQLVEAYLHKEGYRTVGLGSGEEAWELWKASPPDLWVLDLMLPGMDGYEL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ ++ I+ + + KPF R+LV V R L +
Sbjct: 68 CRRIRNE-AEVPIIMISARDTEVDKILGLELGSDDYMVKPFSPRELVARVKRQLQRQ 123
>gi|228989788|ref|ZP_04149768.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228769935|gb|EEM18518.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R ++ ++ +T + ++KPFH +L+ + +L N
Sbjct: 64 CNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSN 120
>gi|307328862|ref|ZP_07608032.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306885527|gb|EFN16543.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 245
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + +GA A RE ++ D+++P+MDG+
Sbjct: 21 RVLVVDDESALADLLSMALRYEGWEVRTAGDGAEAIRITRELRPDAVVLDVMLPDMDGLT 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + LL
Sbjct: 81 VLGRLRRELPDIPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLLRR 137
>gi|189218617|ref|YP_001939258.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
[Methylacidiphilum infernorum V4]
gi|189185475|gb|ACD82660.1| DNA-binding response regulator, OmpR family (REC-wHTH domains)
[Methylacidiphilum infernorum V4]
Length = 268
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RF+ +AL + G+ V C+ G A + P+ + DI++P DGI
Sbjct: 47 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 106
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E L ++ ++ + + L KPF + +LV + L+
Sbjct: 107 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 163
>gi|329957720|ref|ZP_08298195.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328522597|gb|EGF49706.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1343
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 64/122 (52%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R++L + LG + Y +++ NG A V+E+ L+LTD++MP MDG
Sbjct: 1096 KENILIVEDNTDIRQYLCEELGNS-YHILTAENGEEALSIVKEQEIDLILTDVMMPVMDG 1154
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + ++ ++ + + + KPF + +V ++ L
Sbjct: 1155 LQLCKQIKQNLRTCHIPIIILSAKTDLKEQLEGLQVGADDYIPKPFSMAVIVAKIRNLFR 1214
Query: 120 IK 121
+
Sbjct: 1215 TR 1216
>gi|312883993|ref|ZP_07743710.1| sensory box sensor histidine kinase/response regulator [Vibrio
caribbenthicus ATCC BAA-2122]
gi|309368451|gb|EFP95986.1| sensory box sensor histidine kinase/response regulator [Vibrio
caribbenthicus ATCC BAA-2122]
Length = 1127
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ R L L GY V++ N+G SA + VR E L+L DI++P+M G ++
Sbjct: 723 ILVVDDEPINLRILNSYLKTEGYRVLTVNDGLSALEAVRNETPQLILLDIMIPDMSGYDV 782
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + L ++ +T A LSKPF+ ++L+ + L
Sbjct: 783 CVKLRKTYDHATLPIIMLTALNQTEDRLKGFASGANDFLSKPFNQKELLARITAHL 838
>gi|308067144|ref|YP_003868749.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305856423|gb|ADM68211.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+LA+D+ + +FL L GYEV + NG+ A D RE + + D++MPEM+G E
Sbjct: 8 KIMLADDEPHILQFLELGLINEGYEVRTAENGSKALDLAREFRPHVAVLDVMMPEMNGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + ++ V+ +T V + KPF +L+ + L +
Sbjct: 68 VCQSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYVVKPFSFNELLARIEARLRNQ 125
>gi|300313896|ref|YP_003777988.1| two component transcription response regulator protein
[Herbaspirillum seropedicae SmR1]
gi|300076681|gb|ADJ66080.1| two component transcription response regulator protein
[Herbaspirillum seropedicae SmR1]
Length = 244
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L K L AGY G +A D VR + L+L DI++P MDG E+
Sbjct: 18 ILIVEDEPKLAELLQKYLALAGYSARHVARGDAALDAVRAQRPDLILLDIMLPGMDGWEI 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFHLRDLVNEVNRLLTI 120
R+ D+ V+ +T A + K PF R++V V +L
Sbjct: 78 CRQLR-TFSDVPVLMLTARAEEEDRLRGLELGADDYIGKTPFSPREIVARVKSMLRR 133
>gi|299821621|ref|ZP_07053509.1| response regulator [Listeria grayi DSM 20601]
gi|299817286|gb|EFI84522.1| response regulator [Listeria grayi DSM 20601]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN K+L+ +D+D +RR L L + Y + +NG A D + + ++L D++MP
Sbjct: 1 MNNQIKVLIVDDEDRIRRLLKMYLERESYLIDEADNGDDALDMALKYDYDVILLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ + + ++ +T + + KPF R++V V +L
Sbjct: 61 KDGIEVCKEIR-MAKATPIVMLTAKGEESNRVQGFEVGADDYIVKPFSPREVVLRVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|228995978|ref|ZP_04155634.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229003595|ref|ZP_04161411.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757637|gb|EEM06866.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228763751|gb|EEM12642.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + + F +L DI+MP+MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPRGYNCVCATSGQEAISYIENQSFKFVLLDIMMPKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R ++ ++ +T + ++KPFH +L+ + +L N
Sbjct: 64 CNRIRS-FSNVPIIMVTARDQTIDVIQGLKIGSDDYITKPFHEGELLARIEAVLRRSN 120
>gi|163785470|ref|ZP_02180068.1| Response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
gi|159879260|gb|EDP73166.1| Response regulator containing a CheY-like receiver domain and an
HD-GYP domain [Hydrogenivirga sp. 128-5-R1-1]
Length = 311
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +DD+ R L K GYE NG K EE ++L D++MP MDG
Sbjct: 6 KPKILIVDDDERNRLLFKVILKKEGYETTEAENGEEGIKKALEEKPDVILMDVMMPVMDG 65
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + V+ +T L+KP ++L+ + L
Sbjct: 66 FTATKKLKSDDRTKHIPVIILTALNEREEKLKGIESGANDFLTKPVDTKELLLRIKNHLQ 125
Query: 120 IK 121
IK
Sbjct: 126 IK 127
>gi|315221424|ref|ZP_07863345.1| response regulator receiver domain protein [Streptococcus anginosus
F0211]
gi|315189543|gb|EFU23237.1| response regulator receiver domain protein [Streptococcus anginosus
F0211]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ +G A + E +L+ D+++PEMDG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMVKEGYEVVTAFDGREALEMFEAERPDILILDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V +L
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDSEFDKVIGLEIGADDYMTKPFSNRELQARVKAILRR 118
>gi|312868262|ref|ZP_07728462.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parasanguinis F0405]
gi|311096007|gb|EFQ54251.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Streptococcus parasanguinis F0405]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ + + + K GYEV++ +G A + E +++ D+++PE+DG+
Sbjct: 2 KRILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFSAENPDVIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|188588892|ref|YP_001920540.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum E3 str. Alaska E43]
gi|251779766|ref|ZP_04822686.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|188499173|gb|ACD52309.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum E3 str. Alaska E43]
gi|243084081|gb|EES49971.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 234
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D++ + L L AGY+V+S NNG A + E L+L D+++P +
Sbjct: 1 MSDEKILIVDDEEHIIELLKFNLINAGYKVISANNGIDALKIAKAENPKLILLDLMLPGL 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + ++ ++ +T ++KPF +R+L+ V +
Sbjct: 61 DGFDVCKEVKKNKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|148657588|ref|YP_001277793.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148569698|gb|ABQ91843.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 236
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ +R L L + G+ VV +G A R E L++ D++MPEM
Sbjct: 1 MS-TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMG 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R + V+ +T ++KPF++R+L+ + +L
Sbjct: 60 GYEFLRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118
>gi|146319014|ref|YP_001198726.1| response regulator [Streptococcus suis 05ZYH33]
gi|145689820|gb|ABP90326.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Streptococcus suis
05ZYH33]
Length = 154
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + + GYEVV+ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTREGYEVVTAFDGREALEVFEAEFPDIVILDLMLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPILMLSAKDSEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|322804625|emb|CBZ02177.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K R+ +++ DI++P +DG+E
Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + P++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|209524683|ref|ZP_03273230.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209494827|gb|EDZ95135.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 227
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L +AL + GY V G A + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTNSLSRALSREGYTVDKAYEGIQAGTLAQNHHYDLLILDWMLPHQSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++F+T + L KPF LR+L+ V LL
Sbjct: 62 ICAQLRSQQNRTPILFLTAKDTLDDRVKGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|146338745|ref|YP_001203793.1| two-component regulatory system response regulator [Bradyrhizobium
sp. ORS278]
gi|146191551|emb|CAL75556.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family)
[Bradyrhizobium sp. ORS278]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GYEV + G A +++E L++ D ++P +
Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAEGYEVETVARGDEADTRLKERIPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARSETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|237728724|ref|ZP_04559205.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
gi|226909346|gb|EEH95264.1| transcriptional regulatory protein ompR [Citrobacter sp. 30_2]
Length = 244
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 9 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 69 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 128
>gi|30020095|ref|NP_831726.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|218235313|ref|YP_002366679.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|29895645|gb|AAP08927.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|218163270|gb|ACK63262.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 225
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ V+ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|50123028|ref|YP_052195.1| osmolarity response regulator [Pectobacterium atrosepticum
SCRI1043]
gi|227112166|ref|ZP_03825822.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227329044|ref|ZP_03833068.1| osmolarity response regulator [Pectobacterium carotovorum subsp.
carotovorum WPP14]
gi|253690259|ref|YP_003019449.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261823304|ref|YP_003261410.1| osmolarity response regulator [Pectobacterium wasabiae WPP163]
gi|307132912|ref|YP_003884928.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Dickeya dadantii 3937]
gi|49613554|emb|CAG77005.1| two-component osmolarity response regulator [Pectobacterium
atrosepticum SCRI1043]
gi|251756837|gb|ACT14913.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|261607317|gb|ACX89803.1| two component transcriptional regulator, winged helix family
[Pectobacterium wasabiae WPP163]
gi|306530441|gb|ADN00372.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Dickeya dadantii 3937]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|325663524|ref|ZP_08151934.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331087049|ref|ZP_08336123.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470423|gb|EGC73654.1| hypothetical protein HMPREF0490_02675 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330409329|gb|EGG88776.1| hypothetical protein HMPREF0987_02426 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 225
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L ++GY VV +G A D + +L++ D++MP+
Sbjct: 1 MDKLKILVVDDESRMRKLVKDFLTRSGYTVVEAADGMEAMDIFYEQNDIALIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + + ++ +T + +SKPF + LV V +L
Sbjct: 61 MDGWQVCREVR-MHSKVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRTN 123
>gi|323359211|ref|YP_004225607.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323275582|dbj|BAJ75727.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +IL+ +D+ ++R LI +L AG++V + NGA V EE L++ D+++P+M
Sbjct: 1 MTAPRILVVDDEPNIRDLLITSLRFAGFQVRAVANGAQTISAVLEEEPDLIVLDVMLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G + +R ++F+T ++KPF L ++V + +L
Sbjct: 61 NGFSVTKRLRGAGYTAPILFLTAKDETEDKIMGLNAGGDDYVTKPFSLDEIVARIQAILR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|167036701|ref|YP_001664279.1| two component transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115125|ref|YP_004185284.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166855535|gb|ABY93943.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319928216|gb|ADV78901.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI + +D+ + + L G+ V++ NG + + ++E L++ D+++P +
Sbjct: 1 MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLNTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + L+KPF R+LV V +L
Sbjct: 61 GEELCKRIRQ-FSNVPILMLTAKVQESDKINGFSIGADDYLTKPFSPRELVMRVKAILRR 119
>gi|119488053|ref|ZP_01621497.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119455342|gb|EAW36481.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 469
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L G++V+ +G S K+ + L+L D++MP +DG E
Sbjct: 9 ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEKIKPDLILLDVMMPGVDGFET 68
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR LD D+ V+F+T ++KP + + VN L +++
Sbjct: 69 CRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAIARVNVHLKLRS 128
>gi|218896944|ref|YP_002445355.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218544709|gb|ACK97103.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 225
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ V+ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|170759580|ref|YP_001788664.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169406569|gb|ACA54980.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD + FL L K GYEV NG A +K+ E F L+L DI+MP++D
Sbjct: 1 MNYKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + +L L ++F+T ++KPF L +L ++ +L
Sbjct: 61 GFEAIKIIRKLTNTL-IIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|169828806|ref|YP_001698964.1| sensory transduction protein [Lysinibacillus sphaericus C3-41]
gi|168993294|gb|ACA40834.1| Sensory transduction protein [Lysinibacillus sphaericus C3-41]
Length = 224
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++R + L K G+ V +G A P L++ DI+MP MD
Sbjct: 1 MT-TILVADDDPNIRELVCLFLRKEGFATVEAEDGKEALSIYHSTPVDLVVLDIMMPTMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ ++ +T L+KPF +L V LL
Sbjct: 60 GWTLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKR 119
>gi|148657836|ref|YP_001278041.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148569946|gb|ABQ92091.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +DD + R + L AG++ ++ +GA+A R E L++ D+++P++D
Sbjct: 1 MPQRILVVDDDRQIVRLVSAYLEHAGFQTLTAYDGAAALRLARTERPDLMVLDLMLPDVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +L R + ++ +T ++KPF+ R++V V +L
Sbjct: 61 GADLTRTIRADPHLASMPIIMLTARVDDTDRIVGLELGADDYITKPFNPREVVARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|56752243|ref|YP_172944.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81300669|ref|YP_400877.1| two component LuxR family transcriptional regulator [Synechococcus
elongatus PCC 7942]
gi|56687202|dbj|BAD80424.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81169550|gb|ABB57890.1| two component transcriptional regulator, LuxR family [Synechococcus
elongatus PCC 7942]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ +R + L +G+ V + N ++++++ L++TD++MP +DG +
Sbjct: 10 ILLVDDEPGLREAVQAYLEDSGFRVRTAANAQEGWEQLQQARPDLVITDVMMPRVDGYQF 69
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + L V+ +T ++KPF +LV V LL +
Sbjct: 70 LAQLRGDDRFKALPVILLTARGMTGDRIQGYEAGCDDYIAKPFDPDELVVRVENLLRRR 128
>gi|16329558|ref|NP_440286.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1652041|dbj|BAA16966.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 245
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + + + L + + + N+G + +E+ L++ D+++P++DG+E+
Sbjct: 14 ILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDGLEV 73
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D ++ +T + L KPF R+LV V LL +
Sbjct: 74 CTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLRRQ 132
>gi|312878480|ref|ZP_07738370.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311794740|gb|EFR11179.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G
Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R+ + ++ ++ +T + ++KPF + +L+ + L
Sbjct: 63 IEICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119
>gi|293375785|ref|ZP_06622055.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
gi|325840791|ref|ZP_08167155.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
gi|292645562|gb|EFF63602.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
gi|325490161|gb|EGC92498.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
Length = 232
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q IL+ ED+ D+ + L GY+V NG A + V P L + D++MP+M
Sbjct: 1 MSQSHILIVEDEKDIALAIEAYLTNQGYKVSIAGNGIEALEIVEATPIDLAIVDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + E V+ ++ + ++KPF +L+ VN L
Sbjct: 61 DGITFTMKLREHH-HFPVIMLSAKSEEVDQIMGLNMGADDYVTKPFRPLELLARVNSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|302879699|ref|YP_003848263.1| two component transcriptional regulator PhoB, winged helix family
[Gallionella capsiferriformans ES-2]
gi|302582488|gb|ADL56499.1| two component transcriptional regulator PhoB, winged helix family
[Gallionella capsiferriformans ES-2]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ ++ L+ + +AG+ + ++ A+ ++R+ L+L D ++P
Sbjct: 1 MSAKILIVEDEPAIQELLVFNVTQAGFVALRASDAEEAWQQIRDYAPDLILLDWMLPSTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LA++ D+ ++ +T ++KPF R+L+ + ++
Sbjct: 61 GVVLAKQLRSEARTKDVPIIMLTARGDERDKVLGLESGADDYITKPFSPRELMARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|212696240|ref|ZP_03304368.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
7454]
gi|212676869|gb|EEB36476.1| hypothetical protein ANHYDRO_00776 [Anaerococcus hydrogenalis DSM
7454]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+D +R+F+ L AG+++V G A EE S+ + DI++P +
Sbjct: 1 MSNKILICDDEDHIRQFMKINLEYAGFDIVEAGTGEEALKMADEEKPSVFILDIMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P + ++ ++ + + KPF+ ++L+ V LL
Sbjct: 61 GYEVCDTIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVRSLLRR 120
Query: 121 KN 122
N
Sbjct: 121 VN 122
>gi|172041315|ref|YP_001801029.1| two-component system response regulator [Corynebacterium
urealyticum DSM 7109]
gi|171852619|emb|CAQ05595.1| two-component system response regulator [Corynebacterium
urealyticum DSM 7109]
Length = 256
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++ + +L G++V + +NG +A + + D++MP MDG
Sbjct: 31 KVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDVMMPGMDGFT 90
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E D +F+T V ++KPF L +++ + +L
Sbjct: 91 LLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 147
>gi|52144960|ref|YP_081869.1| response regulator [Bacillus cereus E33L]
gi|51978429|gb|AAU19979.1| response regulator [Bacillus cereus E33L]
Length = 237
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD ++R L L + Y V + NG A + ++L++ D++MP++DGIE
Sbjct: 5 RILIAEDDKEIRNLLKIYLERELYMVDTAINGDEALQLFNQNNYNLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + +++ V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVIARVKALMRR 120
>gi|86135169|ref|ZP_01053751.1| two-component system response regulator [Polaribacter sp. MED152]
gi|85822032|gb|EAQ43179.1| two-component system response regulator [Polaribacter sp. MED152]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ KILL +D+ D+ + L GY+V + NG A ++ L+L DI+MP
Sbjct: 1 MNKSDIKILLVDDEPDILEIVGYNLRNEGYQVFTAENGQEAIKSAKKNTPHLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + ++ ++ + F+T ++KP + LV+++
Sbjct: 61 EMDGIEACEKIRKIKNLDNVIIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKIK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 SLLRR 125
>gi|296159566|ref|ZP_06842390.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295890274|gb|EFG70068.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 246
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|312200460|ref|YP_004020521.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311231796|gb|ADP84651.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 325
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + G +A + E ++ DI++P+MDG+
Sbjct: 84 RVLVVDDESVLTELLTMALRYEGWEVAAAGTGTTALRMIDEFQPDAVVLDIMLPDMDGLA 143
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + PD+ V+F+T AV ++KPF + +L + L+
Sbjct: 144 VLRGMRSVRPDIPVLFLTAKDAVEDRVLGLTAGGDDYVTKPFSIEELAARLRGLMRR 200
>gi|257870291|ref|ZP_05649944.1| transcriptional regulator [Enterococcus gallinarum EG2]
gi|257804455|gb|EEV33277.1| transcriptional regulator [Enterococcus gallinarum EG2]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L K GY+VVS +G D E F ++ D+++P+MDGI
Sbjct: 2 KKILVVDDEPSIVTLLTFNLEKEGYQVVSAVDGKMGVDLALSEDFDFIILDVMLPQMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + ++ +T L+KPF R+++ + +
Sbjct: 62 EITKKLRQEKIETPILVLTAKDDPIDRILGLEIGADDYLTKPFSPREVLARMKAIFRR 119
>gi|228996979|ref|ZP_04156612.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
gi|229007887|ref|ZP_04165458.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
gi|228753392|gb|EEM02859.1| Two-component response regulator vanR [Bacillus mycoides Rock1-4]
gi|228762858|gb|EEM11772.1| Two-component response regulator vanR [Bacillus mycoides Rock3-17]
Length = 232
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q IL+ +DD D+ + + L + G++V NG A D + L + DI+MP M
Sbjct: 1 MKQHSILIVDDDTDIVQLIEVHLKQDGFKVFRAYNGVEALDILDSNDIQLTILDIMMPAM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ RR E ++ VMF++ + ++KPF + +LV V L
Sbjct: 61 DGIEVCRRIREQY-NIPVMFLSAKTTEIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|86146553|ref|ZP_01064875.1| osmolarity response regulator [Vibrio sp. MED222]
gi|218708219|ref|YP_002415840.1| osmolarity response regulator [Vibrio splendidus LGP32]
gi|85835610|gb|EAQ53746.1| osmolarity response regulator [Vibrio sp. MED222]
gi|218321238|emb|CAV17188.1| Transcriptional regulatory protein ompR [Vibrio splendidus LGP32]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + ++ +
Sbjct: 64 LSICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123
>gi|84386370|ref|ZP_00989398.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
gi|84378794|gb|EAP95649.1| Transcriptional regulator OmpR [Vibrio splendidus 12B01]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + ++ +
Sbjct: 64 LSICRRLRNANNSLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVMRRQ 123
>gi|325066734|ref|ZP_08125407.1| two component transcriptional regulator, winged helix family
protein [Actinomyces oris K20]
gi|326773080|ref|ZP_08232364.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
gi|326637712|gb|EGE38614.1| DNA-binding response regulator PhoP [Actinomyces viscosus C505]
Length = 249
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG
Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ARR E D ++F+T +A ++KPF L +++ + +L +
Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134
>gi|291302794|ref|YP_003514072.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290572014|gb|ADD44979.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+AEDD + L + G++V+ +G A D+ R LL+ DI+MP++D
Sbjct: 4 MNARVLVAEDDPKQAHLIRTYLERDGHDVLVVTDGRRAVDETRSRHPDLLVLDIMMPKLD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R D + ++ +T ++KPF R+L V LL
Sbjct: 64 GMDVCRVLRS-DSQVPILVLTARDDEDTLLQGLQLGADDYMTKPFSPRELAARVRALLRR 122
>gi|325264428|ref|ZP_08131159.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324030499|gb|EGB91783.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 245
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I++ +D+ ++R + L GY++ NG A + + + F L++ DI+MP M+G
Sbjct: 3 TARIIIVDDNPEIREIIRILLQGEGYDIEEARNGMEALEMLEQGMFDLIILDIMMPGMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++F++ + + L KPF +LV+ L+
Sbjct: 63 YQTCLEIRKQ-SNAPILFLSAKGQESDKTLGFSSGGDDYLVKPFSYNELVSRAKALIRR 120
>gi|317062130|ref|ZP_07926615.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
gi|313687806|gb|EFS24641.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
Length = 225
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R+ + L + GY V +G + + + +++ DI+MP++DG
Sbjct: 6 KKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGW 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T A + + + + KPF+ + LV +V LL
Sbjct: 66 SVCRKIREE-SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRR 122
>gi|293605229|ref|ZP_06687616.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
43553]
gi|292816372|gb|EFF75466.1| DNA-binding response regulator [Achromobacter piechaudii ATCC
43553]
Length = 252
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GYEV +G ++ E + L+ D+++P +DG+
Sbjct: 15 RRVLIVEDDAHIADLLRLHLRDEGYEVEHAADGNEGMRRLEEGDWDALVLDLMLPGIDGL 74
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ +RA + ++ + ++ L+KPF + +LV V LL +
Sbjct: 75 EICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSS 134
>gi|262276591|ref|ZP_06054400.1| phosphate regulon transcriptional regulatory protein PhoB
[Grimontia hollisae CIP 101886]
gi|262220399|gb|EEY71715.1| phosphate regulon transcriptional regulatory protein PhoB
[Grimontia hollisae CIP 101886]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ V + SA +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSALEKICEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + ++ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|257068117|ref|YP_003154372.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
gi|256558935|gb|ACU84782.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Brachybacterium faecium DSM 4810]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ L +L K GYEV +NG L+L D+++P M G E
Sbjct: 3 RILIVEDEESFSDPLSYSLRKEGYEVAVADNGIDGLRIFSAHGADLVLLDLMLPGMSGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T ++KP+ R+L+ + +L ++
Sbjct: 63 VCREIR-RTSSVPVIMLTAKDDEFDKVLGLELGADDYVTKPYSSRELLARIKAVLRRRH 120
>gi|222529736|ref|YP_002573618.1| winged helix family two component transcriptional regulator
[Caldicellulosiruptor bescii DSM 6725]
gi|222456583|gb|ACM60845.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor bescii DSM 6725]
Length = 234
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + + +D+ D+ + + L + GY V + NG S + + +++ DI++P++
Sbjct: 1 MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ +R + + ++ ++ ++ + + KPF L +L + ++L
Sbjct: 61 DGYEICKRIRK-NSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|158338366|ref|YP_001519543.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158308607|gb|ABW30224.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 8/125 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--------EEPFSLLLTDIVM 56
ILL ED++++R + AL GY V++ +G +A D ++ L++ DI++
Sbjct: 4 ILLVEDEENIRETIAPALQSEGYRVITAADGQTALDVIQLFKSRSQQASTLDLIILDIML 63
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P ++GI+L R + V+ ++ A L+KPF +R+L+
Sbjct: 64 PGINGIDLCRFIRREGSTVPVLMLSAKDTEADRVVGLEVGADDYLTKPFGMRELIARCRA 123
Query: 117 LLTIK 121
LL +
Sbjct: 124 LLRRQ 128
>gi|51094316|gb|AAT95326.1| response regulator [Bifidobacterium breve UCC2003]
Length = 243
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + D V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|260599706|ref|YP_003212277.1| osmolarity response regulator [Cronobacter turicensis z3032]
gi|261341904|ref|ZP_05969762.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
ATCC 35316]
gi|296105099|ref|YP_003615245.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|260218883|emb|CBA34238.1| Transcriptional regulatory protein ompR [Cronobacter turicensis
z3032]
gi|288315807|gb|EFC54745.1| transcriptional regulatory protein OmpR [Enterobacter cancerogenus
ATCC 35316]
gi|295059558|gb|ADF64296.1| osmolarity response regulator [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|124026776|ref|YP_001015891.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
gi|123961844|gb|ABM76627.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
Length = 246
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + + L+ L AGY+V+S +G A + +E L++ D+++P+MDG +
Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYQVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++F+T A++ L+KPF ++L + +L
Sbjct: 64 CRRIRAE-SCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118
>gi|114561406|ref|YP_748919.1| osmolarity response regulator [Shewanella frigidimarina NCIMB 400]
gi|114332699|gb|ABI70081.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 241
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S N + E F LL+ D+++P DG+
Sbjct: 7 KILVVDDDMRLRSLLERYLIEQGFQVRSAANAEQMDRLLERENFHLLVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + + ++ +T L KPF+ R+L+ + ++ +
Sbjct: 67 ICRRLRQQENPIPIVMLTAKGDEVDRIIGLELGADDYLPKPFNPRELLARIKAVMRRQ 124
>gi|325298032|ref|YP_004257949.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324317585|gb|ADY35476.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1336
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++D R F+ +L Y V +NG A K++E L+++D++MP MDG EL
Sbjct: 1089 LVVDDNEDFRLFMRHSLELQ-YRVEVASNGQEALSKIQELQPDLVISDVMMPGMDGNELC 1147
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T AV ++KPF++ LV + +L+ +
Sbjct: 1148 RLIKGDKRTAHIPVILLTARQAVESKVKGLETGADDYVTKPFNMTVLVLRIRKLIEL 1204
>gi|303240403|ref|ZP_07326921.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302592130|gb|EFL61860.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ + + L + GYEV +G + L++ DI++P+++G
Sbjct: 3 TKKILIIDDELSILNLVSMVLKREGYEVEQARDGNTGLRFFESFRPDLIILDIMLPDING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + +M +T + + L+KPF R+L+ V LL
Sbjct: 63 NEVCKMVRS-NSSIPIMMLTAKSDIVDKIVGLELGADDYLTKPFDNRELLVRVKALLRR 120
>gi|212690595|ref|ZP_03298723.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
gi|212666841|gb|EEB27413.1| hypothetical protein BACDOR_00081 [Bacteroides dorei DSM 17855]
Length = 1440
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1242
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1243 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1302
>gi|154496626|ref|ZP_02035322.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
29799]
gi|150274259|gb|EDN01350.1| hypothetical protein BACCAP_00918 [Bacteroides capillosus ATCC
29799]
Length = 224
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+AEDD D+R L L G+ V+ +G +A RE + + DI+MP M+
Sbjct: 1 MNPLILIAEDDADIRALLRLYLEGDGFRVLEAEDGTTALVLAREHAPDMAILDIMMPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + ++ ++ ++ + ++KPF+ ++V V L
Sbjct: 61 GFELTRALRK-YSEIPILILSAKSQDNDKILGLNLGADDYIAKPFNPVEIVARVKAQLRR 119
>gi|315127525|ref|YP_004069528.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
gi|315016039|gb|ADT69377.1| transcriptional regulator [Pseudoalteromonas sp. SM9913]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ +R L+ L + G++ + + SA + E ++L D ++P
Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A++ E + ++ +T ++KPF ++L+ + ++
Sbjct: 61 GIQIAKKFKQNEHTRQIPIIMLTARGEEEDKIRGLEVGADDYVTKPFSPKELMARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|168185772|ref|ZP_02620407.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
gi|169296218|gb|EDS78351.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
Length = 223
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD D++ + + L +GY V ++G S + + F L++ DI++P++D
Sbjct: 1 MEKKILVVEDDFDIQEIISEVLKNSGYIVEVASDGLSGIEMFEKYKFDLIILDIMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + D+ ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKK-SDVPIIMLTALGEEDDEIKGFELKIDDYITKPFSINLLIKRVEAVLRR 119
>gi|84514488|ref|ZP_01001852.1| phosphate regulon transcriptional regulatory protein PhoB
[Loktanella vestfoldensis SKA53]
gi|84511539|gb|EAQ07992.1| phosphate regulon transcriptional regulatory protein PhoB
[Loktanella vestfoldensis SKA53]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L L G+ V+ +G A + EE L+L D ++P GIE+
Sbjct: 8 VLVVEDEPAQREVLAYNLESEGFRVIKAADGNEALLLIEEEQPDLILLDWMLPGTSGIEI 67
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ V+ ++ + +SKP+ + +L+ V L
Sbjct: 68 CRQIKSRPAFRMTPVIMLSARSEEVDKVRGLETGADDYISKPYSIIELLARVKAHLRR 125
>gi|330961382|gb|EGH61642.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GIEL
Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|229073674|ref|ZP_04206788.1| Two-component response regulator [Bacillus cereus F65185]
gi|228709461|gb|EEL61521.1| Two-component response regulator [Bacillus cereus F65185]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GYEV+ +G A E L++ DI++PE+D
Sbjct: 1 MQRNILIVEDEDILREIVKDYLLDDGYEVLEATDGKEALSIFEEHEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWSVCRRIRK-TSNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLIES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|90581397|ref|ZP_01237192.1| osmolarity response regulator [Vibrio angustum S14]
gi|90437374|gb|EAS62570.1| osmolarity response regulator [Vibrio angustum S14]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|310658325|ref|YP_003936046.1| transcription response regulator-like protein [Clostridium
sticklandii DSM 519]
gi|308825103|emb|CBH21141.1| transcription response regulator-like protein [Clostridium
sticklandii]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++++ + K L K GY + N+G R+ L+++D++MP +D
Sbjct: 1 MSFKILIIEDEENISEIVAKYLQKEGYSTLIANDGIEGLALFRDSNPDLVISDVMMPTID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R L D+ V+ +T ++KPF ++LV V +L
Sbjct: 61 GLEVLREIR-LISDVPVIMLTAKQEEVDRLKGFENGADDYVTKPFSPKELVRRVMVMLKR 119
>gi|304406412|ref|ZP_07388068.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304344470|gb|EFM10308.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 227
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + GYE++ +G A ++ + + DI+MP MDG
Sbjct: 3 KILVVDDDPNIRELSSVFLRREGYEILQATDGEDALRQLEAVRPDMAIMDIMMPRMDGWA 62
Query: 64 LARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D+ ++ +T + + L KPF +LV V LL
Sbjct: 63 LCEALRDSYGQDMPLLMLTAKGETSHKVRAFELGADDYLVKPFDPLELVVRVKALLKR 120
>gi|296876105|ref|ZP_06900159.1| response regulator [Streptococcus parasanguinis ATCC 15912]
gi|296432816|gb|EFH18609.1| response regulator [Streptococcus parasanguinis ATCC 15912]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEV++ +G A + E +++ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGREALEVFAAENPDVIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|166030475|ref|ZP_02233304.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
27755]
gi|166029727|gb|EDR48484.1| hypothetical protein DORFOR_00136 [Dorea formicigenerans ATCC
27755]
Length = 234
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+ + + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDEAIAELVSLYLAKECFDTMMVHDGEKALVAFDTYHPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAR-ANTPIIMLSAKGEVFDKVLGLELGADDYIMKPFDSKELVARVKAVLRR 121
>gi|297585569|ref|YP_003701349.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297144026|gb|ADI00784.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 236
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L K G++V+ +G A +K ++ +L+L DI++P DG+E+
Sbjct: 6 ILVVDDEKPIADILKFGLEKEGFDVMVAYDGNEAVEKAKKHVPALILLDIMLPYRDGMEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D+ ++ +T + ++KPF R+LV V L
Sbjct: 66 CREVRKEH-DMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELVARVKANLRR 120
>gi|312878605|ref|ZP_07738465.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311794618|gb|EFR11087.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+ + RF+ L GY+V C +G KV E L+L DI++P ++G
Sbjct: 3 SYKILIIEDEKQIARFIELELKHEGYDVYVCYDGKEGLKKVEEIHPDLILLDIMLPGING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R+ + ++ ++ +T + ++KPF + +L+ + L
Sbjct: 63 IEICRKIRQ-HSNVPLIMVTAKDDIPDRVMGLDSGADDYVTKPFAIEELLARIRAALR 119
>gi|167755460|ref|ZP_02427587.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
gi|237733688|ref|ZP_04564169.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167704399|gb|EDS18978.1| hypothetical protein CLORAM_00974 [Clostridium ramosum DSM 1402]
gi|229383286|gb|EEO33377.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + + L Y+V +G A D +++ + L + D++MP++D
Sbjct: 1 MVYNILVVDDEQSIADLVELYLQNESYQVFKFYHGQEALDSLKKNHYDLAILDVMMPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E V+ +T + L+KPF+ +L V L
Sbjct: 61 GFSLLKKIREDY-FFPVIMLTAKNNDMDKINGLTLGADDYLTKPFNPLELAARVKTQLRR 119
>gi|157693669|ref|YP_001488131.1| response regulator [Bacillus pumilus SAFR-032]
gi|157682427|gb|ABV63571.1| response regulator [Bacillus pumilus SAFR-032]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD D+ L ++L +AGYEV+ NG A K ++ L++ D++MP +
Sbjct: 1 MTHRILVVEDDQDIGDLLQESLTRAGYEVLRAMNGEQAL-KFVDDSLDLVILDVMMPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ ++ ++F+T ++ + ++KPF +L V L
Sbjct: 60 GIETCQQMRA-SSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRR 118
>gi|170719341|ref|YP_001747029.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169757344|gb|ACA70660.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GI
Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|104784360|ref|YP_610858.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas entomophila L48]
gi|95113347|emb|CAK18075.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas entomophila L48]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GI
Sbjct: 4 RNILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|332974891|gb|EGK11804.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+DD +R+ L L + GY V+ +G A + + +EP L + DI+MP DG +
Sbjct: 11 RVLVADDDAHIRKLLRHHLQREGYRVLEAADGLEAAEWLEKEPIELAVVDIMMPNKDGYQ 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E DL V+ +T + L+KPF ++L+ + LL
Sbjct: 71 LCREIREDY-DLPVILLTAKDQLQDKEAGYRAGTDDYLTKPFEPKELLFRIKALLRR 126
>gi|310641009|ref|YP_003945767.1| alkaline phosphatase synthesis transcriptional regulatory protein
phop [Paenibacillus polymyxa SC2]
gi|309245959|gb|ADO55526.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus polymyxa SC2]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ ED++ + R L L GY+V NG + + + L+L DI++P ++
Sbjct: 1 MNQSILIVEDEEKIARLLEIELEFEGYQVSKEKNGIDGLETYCKGSWDLVLLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL RR + D ++ V+ +T +++A + ++KPF + +L+ V L +
Sbjct: 61 GIELLRRIRKHDANVPVILLTAKSSIADKVEGLDLGANDYVTKPFVIEELLARVRAALRV 120
>gi|167761616|ref|ZP_02433743.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
gi|167660759|gb|EDS04889.1| hypothetical protein CLOSCI_04028 [Clostridium scindens ATCC 35704]
Length = 226
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + LG+ GY V +G A + E+ +L++ D++MP
Sbjct: 1 MEKIKILIVDDESRMRKLVKDFLGREGYLVREAGDGMEALEIFYEEKDIALIILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + R + + ++ +T + + +SKPF + LV V +L
Sbjct: 61 MDGWQTCREIRQ-SSQVPIIMLTARSEEHDELQGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSH 123
>gi|307298684|ref|ZP_07578487.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306915849|gb|EFN46233.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + FL K L + G+ V S +G A P+ +++ D+++P +G E
Sbjct: 9 RILIVEDEETISAFLQKGLREEGFVVDSAKDGNEAIRLSSSNPYDVIILDVLLPIKNGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T +V L KPF ++L+ VN LL
Sbjct: 69 VCSELRASGNHTPVLMLTALDSVDERVKGLNTGADDYLVKPFAFKELLARVNALLRR 125
>gi|237725226|ref|ZP_04555707.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229436492|gb|EEO46569.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1446
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1308
>gi|218440527|ref|YP_002378856.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218173255|gb|ACK71988.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 250
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54
+IL+ ED+D +R ++ AL + GYE+ S +G +A + ++ EE F LL+ D+
Sbjct: 18 THRILVVEDEDVIRDMVVLALEEEGYELQSAADGRTALELLQGSDSTESEESFDLLVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 78 MLPQVNGLDICRLLRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIKN 122
LL ++
Sbjct: 138 RALLRRQS 145
>gi|320532288|ref|ZP_08033144.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135495|gb|EFW27587.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 249
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R L +L AG+EV +G A V + L++ D+++P+MDG
Sbjct: 16 HLLVVDDEPNIRDLLASSLRFAGFEVSIAGDGNGALKTVEKTSPDLVVLDVMLPDMDGFT 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ARR E D ++F+T +A ++KPF L +++ + +L +
Sbjct: 76 VARRLRERDVTTPILFLTARDDMADKVQGLTVGGDDYVTKPFGLEEVIARIRAILRRTH 134
>gi|255523050|ref|ZP_05390022.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255513165|gb|EET89433.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 230
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ + + GY NG A + ++E +++ DI+MP++D
Sbjct: 1 MNS-ILIVDDDKEIVELIDFYMKNNGYNTYKAFNGKEALEIFQKEQIDIVILDIMMPDLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E ++F++ D L+KPF+ +L+ V LL
Sbjct: 60 GKEVLRKIREK-SSTPIIFLSAKGEDIDKIDGLFLGADDYLAKPFNTLELIARVKALLRR 118
>gi|170761752|ref|YP_001787320.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169408741|gb|ACA57152.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYRVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQICQKIRDKVS-CPIIFLSARQSEVDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|253573667|ref|ZP_04851010.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251847195|gb|EES75200.1| two-component system response regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 234
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +DD+ + + + L GY V+ +G A + ++ L++ D+++P +D
Sbjct: 1 MSKRILIVDDDEKIAKLIEIYLMNEGYHVLKAEDGLRALEITEQDEVDLVILDVMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E ++ ++ + KPF+ +LV V LL
Sbjct: 61 GISVCMKIRE-SKTTPILMLSAKDGDMDKITGLMTGADDYMVKPFNPLELVARVKSLLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|237709630|ref|ZP_04540111.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229456266|gb|EEO61987.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1446
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1308
>gi|159029102|emb|CAO90091.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 226
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL EDD + F+ L GY+V +NG R+ LL+ D ++P +
Sbjct: 1 MNDHILLVEDDPKLAEFIATELHLEGYQVTIASNGMDGLKIARDSSPDLLILDWMLPVIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L R + + ++ +T + ++KPF + +L+ V L
Sbjct: 61 GLDLCLRLRKTGMEAPIIILTAKDEIPDRVTGLNAGADDYVTKPFSMEELLARVKARLRR 120
Query: 121 KN 122
+
Sbjct: 121 TH 122
>gi|60679763|ref|YP_209907.1| putative two-component response regulator transcriptional
regulatory protein [Bacteroides fragilis NCTC 9343]
gi|60491197|emb|CAH05945.1| putative two-component response regulator transcriptional
regulatory protein [Bacteroides fragilis NCTC 9343]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL
Sbjct: 4 ILIIEDEQRVADLLRVGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +P + ++ +T + D + KPF R+L + LL K
Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRVLLKRK 120
>gi|260584330|ref|ZP_05852077.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
700633]
gi|260157848|gb|EEW92917.1| DNA-binding response regulator SaeR [Granulicatella elegans ATCC
700633]
Length = 232
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY V ++G + + + L++TDI+MP+MD
Sbjct: 1 MEKTILLVDDEFEITDIQNRYLAQAGYTVFVAHDGVEGLELFKNKSIDLIITDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + L PD +FIT + + ++KPF R+LV VN +
Sbjct: 61 GYDFISEVQYLSPDQPFLFITAKTSEQDKIFGLSMGADDFITKPFSPRELVLRVNNIFRR 120
>gi|124003498|ref|ZP_01688347.1| two-component system sensor histidine kinase/response regulator,
hybrid [Microscilla marina ATCC 23134]
gi|123991067|gb|EAY30519.1| two-component system sensor histidine kinase/response regulator,
hybrid [Microscilla marina ATCC 23134]
Length = 1338
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ ++R+F+ L Y+V+ +G +K + L+++D++MP+ DG
Sbjct: 1087 SHTVLVVEDNHELRQFIRTELAVT-YQVIEAADGVEGIEKASNQLPDLIISDLMMPKADG 1145
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL R + ++ ++ A+ L+KPF R+LV + L
Sbjct: 1146 LELLRTLRNNPQTCHIPIIILSAKASFESKITGLETGGDDYLTKPFSPRELVLRIKNTLE 1205
Query: 120 IK 121
+
Sbjct: 1206 RR 1207
>gi|332524805|ref|ZP_08400998.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
gi|332108107|gb|EGJ09331.1| osmolarity response regulator [Rubrivivax benzoatilyticus JA2]
Length = 244
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +DD +R L + L + G+EV+ + + + + L++ D+++P DG+
Sbjct: 11 RIVVVDDDARIRDLLRRYLSQEGFEVLLAEDAKALNRVLTRDTVDLIVLDLMLPGEDGLS 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 71 ICRRLRAANDITPIIMLTAKVEDVDRIVGLEVGADDYLPKPFNPRELLARIHAVLRRR 128
>gi|332285264|ref|YP_004417175.1| two component response regulator [Pusillimonas sp. T7-7]
gi|330429217|gb|AEC20551.1| two component response regulator [Pusillimonas sp. T7-7]
Length = 233
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + Y+ + + + +++ L++ D +MP+ DG E
Sbjct: 7 KVLVVDDDPALRQLLADYLNRHNYDTLLAPDASDLPARIQRYSPDLIVLDRMMPDGDGAE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + D+ V+ +T L KPF R+L+ + +L K
Sbjct: 67 ACRRLRQQGEDIPVILLTARDETVDRVIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124
>gi|315178837|gb|ADT85751.1| osmolarity response regulator [Vibrio furnissii NCTC 11218]
Length = 240
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|307297684|ref|ZP_07577490.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306916944|gb|EFN47326.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 239
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K IL+ +D+ + L L K GYEV+ + A + + + DI++P M
Sbjct: 1 MAKKSILVVDDEPSIVELLTFNLKKEGYEVLKAYDAEEALKIAEDNETDMFIVDIMLPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG EL R E V+F++ + ++KPF +R+++ + +
Sbjct: 61 DGFELVRNLRATEKFRQTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREVLARIRAV 120
Query: 118 LTI 120
Sbjct: 121 FRR 123
>gi|239617803|ref|YP_002941125.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
gi|239506634|gb|ACR80121.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
Length = 228
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + K L G+ V +G D + ++ DI++P M GIE
Sbjct: 2 KILVVEDNKKLAENIKKYLELEGFIVDLAYDGNEGLDLALSYNYDCIILDIILPGMSGIE 61
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E + ++ +T +V + + KPF LR+LV V L+
Sbjct: 62 ICRFLRDEEKSQVPILMLTALGSVENRVEGLNVGADDYMPKPFDLRELVARVRALIRR 119
>gi|257060465|ref|YP_003138353.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|256590631|gb|ACV01518.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 250
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54
N +IL+ ED+D +R + AL + GYEV++ ++G +A + ++ E F L++ D+
Sbjct: 18 NHRILVVEDEDVIRDMITIALEEQGYEVITASDGRTALNLLQDVATLGTESGFDLVVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G+++ R + + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 MLPQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIKN 122
L+ ++
Sbjct: 138 RALIRRQD 145
>gi|194015744|ref|ZP_03054360.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
gi|194013148|gb|EDW22714.1| regulatory protein VanR [Bacillus pumilus ATCC 7061]
Length = 231
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD D+ L ++L +AGYEV NG A K ++ L++ D++MP +
Sbjct: 1 MTHRILIVEDDQDIGDLLQESLTRAGYEVQRAMNGEQAL-KFVDDSLDLVILDVMMPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ ++ ++F+T ++ + ++KPF +L V L
Sbjct: 60 GIETCQQMRA-SSNVPILFLTAKSSTFDKTEGLLAGGDDYMTKPFSQEELHARVIAQLRR 118
>gi|269103311|ref|ZP_06156008.1| phosphate regulon transcriptional regulatory protein PhoB
[Photobacterium damselae subsp. damselae CIP 102761]
gi|268163209|gb|EEZ41705.1| phosphate regulon transcriptional regulatory protein PhoB
[Photobacterium damselae subsp. damselae CIP 102761]
Length = 229
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + SA +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDSALEKICEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|78211661|ref|YP_380440.1| two component transcriptional regulator [Synechococcus sp. CC9605]
gi|78196120|gb|ABB33885.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9605]
Length = 253
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ +RR L+ L +GY V+ +G A + E L++ D+++P++DG
Sbjct: 10 KATILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEEALEMYHNESPDLVVLDVMLPKLDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++F++ A++ L KPF ++L ++ +L
Sbjct: 70 FAVCRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARISTILRR 127
>gi|326335904|ref|ZP_08202081.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
str. F0234]
gi|325691868|gb|EGD33830.1| DNA-binding response regulator [Capnocytophaga sp. oral taxon 338
str. F0234]
Length = 241
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L +G++V NG +DK R++P+ + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + + ++F+T L+KPF L+ ++ +L K
Sbjct: 65 FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|268609558|ref|ZP_06143285.1| two component transcriptional regulator [Ruminococcus flavefaciens
FD-1]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ L L K GY V+ C++G A K + ++L DI++P DG +
Sbjct: 8 KVLIVDDDKNICDLLRLYLEKDGYSVLLCHDGDDAVVKFKALSPDMVLLDIMLPGKDGWQ 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ ++ IT + KPF ++++ +N +
Sbjct: 68 VCREIRKI-SNVPIIMITAKGETIDKVIGLELGADDYIVKPFDAKEVIARINAVTRR 123
>gi|258514364|ref|YP_003190586.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778069|gb|ACV61963.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 235
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L + GY+V++ +G +A R E L++ DI++PE DG+ +
Sbjct: 4 VLVVDDEQNIIEIIKFNLEREGYQVITARDGTTALQLARSEKPDLIILDIMLPEQDGLAV 63
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + ++ ++ ++KPF R+LV V L
Sbjct: 64 CRLLQQEQKTRGIPIIMVSARGDELDKILGLEMGADDYVTKPFSPRELVARVKARLRR 121
>gi|17227625|ref|NP_484173.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|75907720|ref|YP_322016.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|17135107|dbj|BAB77653.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|75701445|gb|ABA21121.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 247
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ V+ +T + + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|226942667|ref|YP_002797740.1| osmolarity response regulator [Azotobacter vinelandii DJ]
gi|226717594|gb|ACO76765.1| two-component response regulator OmpR [Azotobacter vinelandii DJ]
Length = 246
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +R L + L + GY V + N + E F+L++ D+++P DG+
Sbjct: 12 EKILVVDDDPRLRHLLERFLSEQGYRVRAVENVEQMDRLLGRELFNLVVLDLMLPGEDGM 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR D + ++ +T L+KPF+ R+L+ + +L +
Sbjct: 72 SACRRLRASDNQVSIIMLTAKGDEGSRIQGLEQGADDYLAKPFNPRELLARIKAVLRRQ 130
>gi|332669109|ref|YP_004452117.1| winged helix family transcriptional regulator [Cellulomonas fimi
ATCC 484]
gi|332338147|gb|AEE44730.1| two component transcriptional regulator, winged helix family
[Cellulomonas fimi ATCC 484]
Length = 238
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED++ R L L + GYEVV+ +G A + E L+L D+++P + G E
Sbjct: 3 RILLVEDEESYREPLTYQLEREGYEVVAAADGLQAIELFEEHGADLVLLDLMLPGLPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR L D+ V+ +T ++KP+ R+L+ + +L +
Sbjct: 63 VCRRLR-LTSDVPVIMLTAKDDEIDKVVGLELGADDYVTKPYSSRELLARMRAVLRRR 119
>gi|307154473|ref|YP_003889857.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306984701|gb|ADN16582.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 234
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + + + L + + G A + + +++ DI++PE+D
Sbjct: 1 MN--ILIVEDEPEIAQLIRETLERENFTCHIARTGLQALEFFGQLQPDVIVLDIMLPELD 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + D ++ +T + L KPF +LV V LL
Sbjct: 59 GLEVCTRIRQKPGTKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALL 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|91774844|ref|YP_544600.1| two component transcriptional regulator [Methylobacillus
flagellatus KT]
gi|91708831|gb|ABE48759.1| two component transcriptional regulator, winged helix family
[Methylobacillus flagellatus KT]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ L L +AG+ V + A +RE L+L D ++P M
Sbjct: 1 MPANILVVEDEPAIQELLALNLTQAGHNPVRALSVEQAQMLIREALPDLILLDWMLPGMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE AR+ EL + ++ +T A ++KPF R+L + +L
Sbjct: 61 GIEFARKLKSDELTKAIPIIMLTARGEEADKVRGLEVGADDYVTKPFSPRELNARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|329961484|ref|ZP_08299565.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
gi|328531696|gb|EGF58525.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
Length = 1361
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+R++L + LGK+ Y + NG A + ++E+ L+LTD++MP MDG++L
Sbjct: 1110 ILIVEDNADIRQYLSRELGKS-YRTLEAENGEEALNILKEQEIDLILTDVMMPVMDGLKL 1168
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + V+ ++ + + + KPF + + ++ L ++
Sbjct: 1169 CKHIKQNLYTCHIPVIMLSAKTDLKEQIEGLQMGADDYIPKPFSMALVTTKIRNLFRTRH 1228
>gi|229074768|ref|ZP_04207787.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
gi|229096067|ref|ZP_04227041.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
gi|229115024|ref|ZP_04244435.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
gi|228668440|gb|EEL23871.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock1-3]
gi|228687359|gb|EEL41263.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock3-29]
gi|228708366|gb|EEL60520.1| Transcriptional regulatory protein srrA [Bacillus cereus Rock4-18]
Length = 243
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 11 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 71 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 126
>gi|209693817|ref|YP_002261745.1| osmolarity response regulator [Aliivibrio salmonicida LFI1238]
gi|208007768|emb|CAQ77889.1| response regulator homolog OmpR [Aliivibrio salmonicida LFI1238]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSNNNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|325066524|ref|ZP_08125197.1| two component system response regulator [Actinomyces oris K20]
Length = 248
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E
Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 78 VMRRVRGHRPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRR 134
>gi|254413738|ref|ZP_05027507.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196179335|gb|EDX74330.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 227
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L + L + GYEV G S + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTDPLSRVLKREGYEVDVAYEGQSGRQLAMQSDYDLLILDWMLPHQSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ V+F+T + L KPF LR+L+ V LL
Sbjct: 62 LCQQLRSQGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|49476768|ref|YP_034607.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118476036|ref|YP_893187.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196042337|ref|ZP_03109611.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196047737|ref|ZP_03114937.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225862323|ref|YP_002747701.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228913014|ref|ZP_04076654.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229089401|ref|ZP_04220673.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
gi|229182669|ref|ZP_04309911.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
gi|49328324|gb|AAT58970.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|118415261|gb|ABK83680.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196021427|gb|EDX60134.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196026831|gb|EDX65464.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|225789225|gb|ACO29442.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228600809|gb|EEK58387.1| hypothetical protein bcere0004_2530 [Bacillus cereus BGSC 6E1]
gi|228693935|gb|EEL47626.1| hypothetical protein bcere0021_2500 [Bacillus cereus Rock3-42]
gi|228846634|gb|EEM91646.1| hypothetical protein bthur0012_2590 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 237
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + +G A + +SL++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>gi|317479680|ref|ZP_07938804.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|316904181|gb|EFV26011.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 885
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED++++ + +++ L + Y V + NG A + E L+++D++MP MDGI
Sbjct: 632 HTILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGI 690
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R + V+ +T ++ +SKPF+L L + LL
Sbjct: 691 EFCRYVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 750
Query: 121 K 121
K
Sbjct: 751 K 751
>gi|210614659|ref|ZP_03290270.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
gi|210150649|gb|EEA81658.1| hypothetical protein CLONEX_02484 [Clostridium nexile DSM 1787]
Length = 224
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+K+L+ +D+ + L + V + +G +A + L+L DI MP MD
Sbjct: 1 MNEKLLIVDDERGVVDMLKSYFEMQSFVVYTAYDGETALKQAACH-PDLVLLDINMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + ++F+T A + KPF + +L V L
Sbjct: 60 GLTVCEKIRS-HISCPILFLTARIETADKIKGFQVGADDYIIKPFDIDELGARVAAHLRR 118
Query: 121 KN 122
+N
Sbjct: 119 EN 120
>gi|148269659|ref|YP_001244119.1| two component transcriptional regulator [Thermotoga petrophila
RKU-1]
gi|147735203|gb|ABQ46543.1| two component transcriptional regulator, winged helix family
[Thermotoga petrophila RKU-1]
Length = 223
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P DG E
Sbjct: 2 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E + V+ +T + V L KPF LR+L+ V L+ K+
Sbjct: 62 ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120
>gi|126700822|ref|YP_001089719.1| two-component response regulator [Clostridium difficile 630]
gi|115252259|emb|CAJ70100.1| Two-component response regulator [Clostridium difficile]
Length = 223
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ M+ +++ + K GY ++ ++G A ++ L++ DI+MP +DG
Sbjct: 3 KILVVEDEKRMQNIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + E+ ++ ++ +T ++KPF + L+ +VN LL
Sbjct: 63 VCRVSREMT-NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118
>gi|39995705|ref|NP_951656.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|39982469|gb|AAR33929.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|298504717|gb|ADI83440.1| sigma-54-dependent transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 470
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 65/117 (55%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +R L + L K GY V + +G A +++++E + L++TD+ MP M G+E+
Sbjct: 6 VLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQDENYGLVITDLKMPGMSGMEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L P++ V+ ITGF+ V ++ ++KPF + +V + L +
Sbjct: 66 LKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPDQITEKVRKALEQR 122
>gi|54307916|ref|YP_128936.1| putative DNA-binding response regulator PhoB [Photobacterium
profundum SS9]
gi|46912342|emb|CAG19134.1| putative DNA-binding response regulator PhoB [Photobacterium
profundum SS9]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + A +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|85703117|ref|ZP_01034221.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius sp. 217]
gi|85672045|gb|EAQ26902.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius sp. 217]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ R L L G+ V++ +NG A V E P +++ D +MP + GIE
Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVSEMPPDIIVLDWMMPNVSGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ + + KP+ L +L+ V L
Sbjct: 67 VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125
>gi|329946290|ref|ZP_08293884.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527582|gb|EGF54577.1| response regulator MprA [Actinomyces sp. oral taxon 170 str. F0386]
Length = 248
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + +G +A +E +++ DI++P+ DG+E
Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGSGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 78 VMRRVRGHSPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRR 134
>gi|282900084|ref|ZP_06308041.1| Two Component Transcriptional Regulator, LuxR family
[Cylindrospermopsis raciborskii CS-505]
gi|281194966|gb|EFA69906.1| Two Component Transcriptional Regulator, LuxR family
[Cylindrospermopsis raciborskii CS-505]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + + L ++G+ V +N ++ +++ L+++DI+MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFGVRVASNAREGWELIQQNTPDLVISDIMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ + L V+F+T LSKPF +L+ +N LL
Sbjct: 61 GYQFLKQLRDDPRLASLPVIFLTAKGMTGDRIQGYQAGVDAYLSKPFDPDELIAIINNLL 120
Query: 119 TIK 121
+
Sbjct: 121 EKR 123
>gi|255658266|ref|ZP_05403675.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Mitsuokella multacida DSM 20544]
gi|260849578|gb|EEX69585.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Mitsuokella multacida DSM 20544]
Length = 235
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 4/118 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R L L K+GYEV +G +A + E L+L DI++PE+DG+E+
Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLEV 60
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ +T A + KPF +R+L+ V +L
Sbjct: 61 CRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118
>gi|226324180|ref|ZP_03799698.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
gi|225207729|gb|EEG90083.1| hypothetical protein COPCOM_01959 [Coprococcus comes ATCC 27758]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G + DK F L++ D+++P +D
Sbjct: 1 MS-KILIVEDEESIADLEKDYLELSGFEVEVANDGQTGLDKALFGDFDLVILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICRKVRAE-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|258611947|ref|ZP_05243319.2| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
R2-503]
gi|300765000|ref|ZP_07074988.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
N1-017]
gi|258607360|gb|EEW19968.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
R2-503]
gi|300514300|gb|EFK41359.1| DNA-binding response regulator PhoP [Listeria monocytogenes FSL
N1-017]
Length = 240
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG+ VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 7 KILVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 67 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 123
>gi|156740374|ref|YP_001430503.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156231702|gb|ABU56485.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 230
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + ++ L G+ V + +G SA + L++ D+++P MD
Sbjct: 1 MAATILVVEDEEPILNLVVAYLKADGFAVHTARDGESALMLAQTLQPDLIVLDLLLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + D V+ +T A + L+KPF R+LV V +L
Sbjct: 61 GLEICRRL-QRDGGPYVLMLTARAEEVDKVVGLSVGADDYLTKPFSPRELVARVKAILRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|265754262|ref|ZP_06089451.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263234971|gb|EEZ20526.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1446
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +++ EE ++TDI+MP MDGIE
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEEIEEEVPDFIITDIMMPRMDGIE 1248
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1249 LIRHIKENVNTCDIPIIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1308
>gi|162450706|ref|YP_001613073.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
gi|161161288|emb|CAN92593.1| two-component response regulator [Sorangium cellulosum 'So ce 56']
Length = 241
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL EDD + L L GY V+ +G R L++ D+++P ++G
Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R L V+ ++ A ++KPF L +L+ V +L
Sbjct: 77 ELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRR 134
>gi|296135841|ref|YP_003643083.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
gi|294340005|emb|CAZ88369.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
gi|295795963|gb|ADG30753.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
Length = 242
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+++ +DD +R L + L + GYEV + + + +E F L++ D+++P DG+
Sbjct: 7 KKLMVVDDDARIRDLLRRYLSQEGYEVFVAEDSKAMSRIMVKERFDLIVLDLMLPGEDGL 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R ++ +T L KPF+ R+L+ ++ +L +
Sbjct: 67 SICKRLRASKDQTPIIMLTAKGEDVDRIIGLEVGADDYLPKPFNPRELLARISAVLRRQ 125
>gi|237808813|ref|YP_002893253.1| two component transcriptional regulator PhoB, winged helix family
[Tolumonas auensis DSM 9187]
gi|237501074|gb|ACQ93667.1| two component transcriptional regulator PhoB, winged helix family
[Tolumonas auensis DSM 9187]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED+ +R L L + GYE V + A V+E L+L D ++P
Sbjct: 1 MSMRVLVVEDEAPIREMLCFMLEQKGYEPVEAADFTEAVALVKEPYPELILLDWMIPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + EL ++ ++ +T ++KPF ++L + ++
Sbjct: 61 GIQFIKLMKQEELTRNIPIVMLTARGEEEDKVRGLEVGADDYITKPFSPKELTARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|159035892|ref|YP_001535145.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157914727|gb|ABV96154.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 237
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+D++R L L ++V + +G A E L++ D+++P++DG +
Sbjct: 7 RVLVVDDEDNIRALLSATLRLIEFDVRTAASGQEALALAAEFDPDLVVLDVMLPDLDGFQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A+R ++ + V+F+T +AV +SKPF L ++V + +L
Sbjct: 67 VAQRLRDVRVGVPVLFLTARSAVEDRISGLTAGADDYVSKPFSLEEVVLRIRAILRR 123
>gi|46014953|pdb|1NXO|A Chain A, Micarec Ph7.0
gi|46014954|pdb|1NXP|A Chain A, Micarec Ph4.5
gi|46014955|pdb|1NXS|A Chain A, Micarec Ph4.9
gi|46014957|pdb|1NXV|A Chain A, Micarec Ph 4.2
gi|46014958|pdb|1NXW|A Chain A, Micarec Ph 5.1
gi|46014959|pdb|1NXX|A Chain A, Micarec Ph 5.5
gi|116666718|pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
gi|116666719|pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
gi|116666720|pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-Rec On Bef3 Bound
Length = 120
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ D+++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|306826271|ref|ZP_07459605.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
gi|304431547|gb|EFM34529.1| response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + P +F T + + + KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPAQPFLFTTAKTSEQDKIYGLSLGADDFIVKPFSPRELVLRVNNILRR 120
>gi|266623649|ref|ZP_06116584.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
gi|288864541|gb|EFC96839.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
Length = 233
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G+ V+ +NG A D ++ +L++ D++MP+MDG
Sbjct: 13 KILVVDDEARMRKLVKDFLSVKGFSVLEASNGEEAVDLFFEQKDIALIILDVMMPKMDGW 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E R + + ++ +T + + +SKPF + LV V +L N
Sbjct: 73 ETCRTIRK-YSQVPIIMLTARSEERDELQGFNLGVDEYISKPFSPKILVARVEAILRRSN 131
>gi|258623081|ref|ZP_05718094.1| sensory box sensor histidine kinase/response regulator [Vibrio
mimicus VM573]
gi|258584694|gb|EEW09430.1| sensory box sensor histidine kinase/response regulator [Vibrio
mimicus VM573]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E LLL DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|188585846|ref|YP_001917391.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350533|gb|ACB84803.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 233
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+Q++L+ +DD D+ + L G+ V +G + Y+ V + ++ ++ DI++PEMDG
Sbjct: 3 DQQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + + + ++ +T + KPF R+LV V L+
Sbjct: 63 WEVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|217960013|ref|YP_002338569.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|222096097|ref|YP_002530154.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|229139204|ref|ZP_04267779.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
gi|217063457|gb|ACJ77707.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|221240155|gb|ACM12865.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|228644263|gb|EEL00520.1| Sensor histidine kinase [Bacillus cereus BDRD-ST26]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|153829131|ref|ZP_01981798.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
gi|148875389|gb|EDL73524.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 623-39]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|228473133|ref|ZP_04057890.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
33624]
gi|228275715|gb|EEK14492.1| DNA-binding response regulator RprY [Capnocytophaga gingivalis ATCC
33624]
Length = 241
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L +G++V NG +DK R++P+ + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMSGFDVTLAKNGMEGFDKFRKDPYDMCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + + ++F+T L+KPF L+ ++ +L K
Sbjct: 65 FTLAKEIREKNEKVPIIFLTARTMREDVIKGYKSGADDYLNKPFDSEVLLMKIRAMLQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|160902317|ref|YP_001567898.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
gi|160359961|gb|ABX31575.1| two component transcriptional regulator, winged helix family
[Petrotoga mobilis SJ95]
Length = 222
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + + + L + GY + +G A + + + L++ DI++P+ DGI
Sbjct: 2 KILVVEDEEKLAYIIKRGLTEEGYCIDVVYDGEEAENYAKYSSYDLIILDIMLPKKDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + + ++ +T +V L KPF +L V LL ++
Sbjct: 62 VCQNIRKENINTPILMLTAKDSVGDRVKGLDSGADDYLVKPFDFDELFARVRSLLRRES 120
>gi|314939668|ref|ZP_07846893.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
gi|314943966|ref|ZP_07850667.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|314953851|ref|ZP_07856714.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|314993556|ref|ZP_07858912.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|314997069|ref|ZP_07862059.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|313588840|gb|EFR67685.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a01]
gi|313591993|gb|EFR70838.1| response regulator receiver domain protein [Enterococcus faecium
TX0133B]
gi|313594186|gb|EFR73031.1| response regulator receiver domain protein [Enterococcus faecium
TX0133A]
gi|313597390|gb|EFR76235.1| response regulator receiver domain protein [Enterococcus faecium
TX0133C]
gi|313641077|gb|EFS05657.1| response regulator receiver domain protein [Enterococcus faecium
TX0133a04]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMD
Sbjct: 18 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D+ V+ IT A ++KP + +++ V LL
Sbjct: 77 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 136
>gi|210610307|ref|ZP_03288336.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
gi|210152537|gb|EEA83543.1| hypothetical protein CLONEX_00526 [Clostridium nexile DSM 1787]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G + K E + L + D+++P +D
Sbjct: 1 MS-KILIVEDEEAIADLEKDYLELSGFEVEVANDGETGLKKALENDYDLFILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ ++ ++KPF +LV V +
Sbjct: 60 GFEICRQVRDE-KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMAR 118
>gi|312138242|ref|YP_004005578.1| two component system response regulator phop [Rhodococcus equi
103S]
gi|311887581|emb|CBH46893.1| two component system response regulator PhoP [Rhodococcus equi
103S]
Length = 224
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 53/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L +L G+EV + NGA DK R L+ D++MP MDG +
Sbjct: 2 LIVDDEPSLVELLSVSLRFQGFEVETAANGAEGLDKARAFRPDALILDVMMPGMDGFGML 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D V+F+T AV ++KPF L ++V + +L
Sbjct: 62 RRLRADGVDAPVLFLTARDAVEDKVTGLTIGADDYVTKPFSLEEVVTRLRVILRR 116
>gi|307730872|ref|YP_003908096.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307585407|gb|ADN58805.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 220
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A +P+ L+L D+ +P+ DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAATSQPYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|210608616|ref|ZP_03287933.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
gi|210152971|gb|EEA83977.1| hypothetical protein CLONEX_00112 [Clostridium nexile DSM 1787]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D++ + + L Y V+ C NG A V +E L + D+++P++D
Sbjct: 1 MAINILVVDDEEAIADLVEVYLKSENYNVLKCYNGKDALKCVEKEDIDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T ++KPF + +LV V L
Sbjct: 61 GFDICQKIRENH-HFPVIMLTARDENIDKITGLTIGADDYITKPFQMLELVARVKAQLRR 119
>gi|83643658|ref|YP_432093.1| phosphate regulon transcriptional regulatory protein phoB [Hahella
chejuensis KCTC 2396]
gi|83631701|gb|ABC27668.1| Phosphate regulon transcriptional regulatory protein phoB [Hahella
chejuensis KCTC 2396]
Length = 230
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ +D+ +R + AL A Y+ + + A+ + ++ L+L D ++P + G
Sbjct: 3 SKQVLIVDDEPAIREMIAVALEMADYDYLEAGDAREAHALIIDQKPDLILLDWMLPGVSG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE ARR + ++ ++ +T ++KPF R+LV + +L
Sbjct: 63 IEFARRLKRDQNTSEIPLIMLTAKTEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|321315077|ref|YP_004207364.1| two-component response regulator YkoH [Bacillus subtilis BSn5]
gi|320021351|gb|ADV96337.1| two-component response regulator (YkoH) [Bacillus subtilis BSn5]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ ED++ + R L L GY V +NG + E SL+L D+++P +
Sbjct: 1 MDKGHILIVEDEEKIARVLQLELEYEGYGVTIKHNGTEGLEAAAEGGHSLVLLDVMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + D V+ +T ++ ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120
>gi|312877424|ref|ZP_07737388.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311795813|gb|EFR12178.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
Length = 217
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R+ + L K G+EV ++G A +K + +S+++ D+++P+ DG
Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D D V+ +T + KP +++V V +L
Sbjct: 62 VLREIRKKD-DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117
>gi|254411354|ref|ZP_05025131.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196181855|gb|EDX76842.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 483
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L + L AG+E+ +G +A +++ +P +L+L D++MP +DG E
Sbjct: 28 ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDPPTLVLLDVMMPGIDGFET 87
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ ++F+T ++KPF +++ V L ++
Sbjct: 88 CRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHLKLR 146
>gi|114462377|gb|ABI75119.1| transcriptional regulator OmpR family [Cylindrospermopsis
raciborskii T3]
Length = 272
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
++L+ ED++ +R L+ AL GYEVV+ +G A + +R E F LL+ D+++
Sbjct: 42 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 101
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R++V
Sbjct: 102 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSVREMVARCRA 161
Query: 117 LLTIK 121
LL +
Sbjct: 162 LLRRQ 166
>gi|254976797|ref|ZP_05273269.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255094183|ref|ZP_05323661.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255315935|ref|ZP_05357518.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255518594|ref|ZP_05386270.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255651714|ref|ZP_05398616.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260684746|ref|YP_003216031.1| two-component response regulator [Clostridium difficile CD196]
gi|260688404|ref|YP_003219538.1| two-component response regulator [Clostridium difficile R20291]
gi|306521513|ref|ZP_07407860.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|260210909|emb|CBA66124.1| two-component response regulator [Clostridium difficile CD196]
gi|260214421|emb|CBE06850.1| two-component response regulator [Clostridium difficile R20291]
Length = 223
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ M+ +++ + K GY ++ N+G A ++ L++ DI+MP +DG
Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCITANDGVEALTILKSNNIDLMILDIMMPYLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + E+ ++ ++ +T ++KPF + L+ +VN LL
Sbjct: 63 VCRVSREMT-NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118
>gi|262163963|ref|ZP_06031702.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
mimicus VM223]
gi|262027491|gb|EEY46157.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
mimicus VM223]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E LLL DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|225376457|ref|ZP_03753678.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
16841]
gi|225211833|gb|EEG94187.1| hypothetical protein ROSEINA2194_02099 [Roseburia inulinivorans DSM
16841]
Length = 233
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ N+G A + +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLTKECFDTKIVNDGEEALTAFEQYNPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCREVRAK-ANVPIIMLSAKGEIFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121
>gi|225017545|ref|ZP_03706737.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
DSM 5476]
gi|224949695|gb|EEG30904.1| hypothetical protein CLOSTMETH_01472 [Clostridium methylpentosum
DSM 5476]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMD 60
++IL+ ED+D +R F++ L ++GY VV +NG A E F + L DI+MP +D
Sbjct: 2 KRILVCEDEDVIRDFVVINLERSGYTVVDVSNGEDALKAFDEAKGDFDIALLDIMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E + ++ +T ++KPF +LV V+ +
Sbjct: 62 GFEVCKRLRERSSTIGIIMLTAKTQEMDKVRGLMLGADDYVAKPFSPSELVARVDAIHRR 121
Query: 121 KN 122
N
Sbjct: 122 VN 123
>gi|118593260|ref|ZP_01550645.1| two-component response regulator [Stappia aggregata IAM 12614]
gi|118434151|gb|EAV40807.1| two-component response regulator [Stappia aggregata IAM 12614]
Length = 240
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD +R + AL KA Y +G A DK SL++ DI +PEMDG+
Sbjct: 4 QTILVVDDDPHIRDVICFALQKASYVFEVAADGKEALDKALLCNPSLIVLDIGLPEMDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++F++ ++KPF R+L+ V +L
Sbjct: 64 DVCRHLR-RTSEVPILFLSARDDEIDRIVGLELGADDYVTKPFSPRELIARVGAILKR 120
>gi|229075160|ref|ZP_04208154.1| Two-component response regulator [Bacillus cereus Rock4-18]
gi|228707937|gb|EEL60116.1| Two-component response regulator [Bacillus cereus Rock4-18]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY V+ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNVLEAIDGKEALSIFEEYEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|54309357|ref|YP_130377.1| DNA-binding response regulator OmpR [Photobacterium profundum SS9]
gi|46913793|emb|CAG20575.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
profundum SS9]
Length = 261
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D ++R L + L + Y V +G +R+ L++ D+++P DG+
Sbjct: 15 HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGNEMEQCLRDNSIDLIVLDLMLPGKDGLT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ V+ +T L KPF+ R+L+ V ++
Sbjct: 75 LCRELR-VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARVKAVIRR 130
>gi|310642107|ref|YP_003946865.1| response regulator (chey-like receiver domain and hth-type
DNA-binding domain) [Paenibacillus polymyxa SC2]
gi|309247057|gb|ADO56624.1| Response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Paenibacillus polymyxa SC2]
Length = 230
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD D+ + + K+L G+E + +G A ++E ++ DI+MP M+
Sbjct: 1 MQKKILVVDDDKDIVKLITKSLSYEGFETIPAYSGKEALCALKENHIDFIILDIMMPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+++ R + ++F++ ++KPF +++L + +
Sbjct: 61 GLDVCRSIRNSY-NAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELTSRIRA 115
>gi|261250289|ref|ZP_05942865.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
orientalis CIP 102891]
gi|260939405|gb|EEX95391.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
orientalis CIP 102891]
Length = 1128
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ R L L GY V + +G A V +E LLL DI+MP M G ++
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKDGHEALAAVEKEKPELLLLDIMMPGMSGYQVC 784
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E L ++ +T + LSKPF+ ++L + LT
Sbjct: 785 ESLRESYDHAALPIIMLTALNQTDDRIRGFSVGANDYLSKPFNKQELAARIVAHLT 840
>gi|257467841|ref|ZP_05631937.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
Length = 221
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R+ + L + GY V +G + + + +++ DI+MP++DG
Sbjct: 2 KKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLELFFQTTYDIVILDIMMPKIDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T A + + + + KPF+ + LV +V LL
Sbjct: 62 SVCRKIREE-SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRR 118
>gi|229593403|ref|YP_002875522.1| phosphate regulon two-component system response regulator
[Pseudomonas fluorescens SBW25]
gi|312963904|ref|ZP_07778375.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas fluorescens WH6]
gi|229365269|emb|CAY53596.1| phosphate regulon two-component system, response regulator
[Pseudomonas fluorescens SBW25]
gi|311281939|gb|EFQ60549.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas fluorescens WH6]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GIEL
Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|229169551|ref|ZP_04297255.1| Two-component response regulator [Bacillus cereus AH621]
gi|228613941|gb|EEK71062.1| Two-component response regulator [Bacillus cereus AH621]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y+V+ +G A +EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALALFKEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|217076267|ref|YP_002333983.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
gi|217036120|gb|ACJ74642.1| DNA-binding response regulator [Thermosipho africanus TCF52B]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++I++ +D ++ + L K GYEVV + A ++++++ + L DI++P MDG
Sbjct: 3 KRRIMVIDDQPEILELISFTLEKEGYEVVPVEDAEKALEEIKDKEIDMFLVDIMLPGMDG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E V+F++ ++KPF +R+L+ + +
Sbjct: 63 FEFVRNIRSQEKYKSTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|308067409|ref|YP_003869014.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
gi|305856688|gb|ADM68476.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
Length = 226
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL ED+ +R + + +EV NG A + L++ DI+MPE+D
Sbjct: 1 MKKRVLLVEDEIRIREVIADYFKQNNWEVYEAGNGKDALIWLDSVQPDLIILDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ +T + ++KPF + L+ N L+
Sbjct: 61 GWEVCRQVRSR-SGVPIILLTAKSGDDDKILGFELGADDYVTKPFSPKVLIARANALMKR 119
>gi|160933134|ref|ZP_02080523.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
gi|156868208|gb|EDO61580.1| hypothetical protein CLOLEP_01977 [Clostridium leptum DSM 753]
Length = 233
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
++IL+ ED+D +R F++ L +AGY+VV N+G +A K E F + + DI+MP +D
Sbjct: 2 KRILVVEDEDAIREFVVINLQRAGYDVVEANSGEAALQKYEENHGEFDVAILDIMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + +L ++ +T ++KPF +LV V+ L
Sbjct: 62 GLTVCKELRKKSGNLGIIMLTAKTQEMDKVTGLMLGADDYVTKPFSPSELVARVDSLYRR 121
>gi|254226732|ref|ZP_04920308.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
gi|125620749|gb|EAZ49107.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V51]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|15640642|ref|NP_230271.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|121587963|ref|ZP_01677717.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|121728271|ref|ZP_01681303.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
gi|147675649|ref|YP_001216115.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|153818929|ref|ZP_01971596.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|153822991|ref|ZP_01975658.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|227080803|ref|YP_002809354.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|254850855|ref|ZP_05240205.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|298500739|ref|ZP_07010542.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
gi|9655056|gb|AAF93788.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O1 biovar El Tor str. N16961]
gi|121547810|gb|EAX57898.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 2740-80]
gi|121629465|gb|EAX61892.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae V52]
gi|126510546|gb|EAZ73140.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae NCTC 8457]
gi|126519498|gb|EAZ76721.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae B33]
gi|146317532|gb|ABQ22071.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|227008691|gb|ACP04903.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae M66-2]
gi|227012447|gb|ACP08657.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae O395]
gi|254846560|gb|EET24974.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MO10]
gi|297540520|gb|EFH76578.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MAK 757]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|168184842|ref|ZP_02619506.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226947583|ref|YP_002802674.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|237793672|ref|YP_002861224.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182672112|gb|EDT84073.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226841854|gb|ACO84520.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|229261533|gb|ACQ52566.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K R+ +++ DI++P +DG+E
Sbjct: 3 KILIVEDESSIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + P++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDTDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|218781447|ref|YP_002432765.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
gi|218762831|gb|ACL05297.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
Length = 242
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ ED+ + L L GYEV +G A +K R L++ DI++P++DG
Sbjct: 9 KRRILVVEDEAHIADGLKLNLELNGYEVEIAVDGVEALEKYRFWGPDLIVLDIMLPQIDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + R D + ++ ++ A + LSKPF+L++ + V RL++
Sbjct: 69 LSVLRNIRLNDQHIPILILSAKGAPEDKITGFSYGTDDYLSKPFNLQEFLLRVERLISR 127
>gi|153870406|ref|ZP_01999815.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152073131|gb|EDN70188.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 358
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + L L G++V +G A ++ P L+L D++MP++DG E
Sbjct: 8 TILVVDDIPTNIKVLFDYLKSIGFKVRIAKSGEHALAQIALSPPDLILLDVMMPKIDGFE 67
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ V+F+T ++KPF +++ +N LTI+
Sbjct: 68 VCRRLKADVKTREIPVIFMTAKTETVDKVKGFEVGAVDYVTKPFQQEEVLARINAHLTIR 127
>gi|148242058|ref|YP_001227215.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147850368|emb|CAK27862.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 242
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I + +DD ++R+ L L + GYEV + N+G ++ + L++ D++MP
Sbjct: 1 MAKQQTIWVVDDDSELRQLLSTYLSEQGYEVRTLNDGKQFTARLEFQRPDLVVLDLMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR + DL V+ +T L+KPF R+L + +L
Sbjct: 61 DDGLTILRRLRDGGDDLPVVMLTARGEAVDRIIGLEQGADDYLAKPFMPRELSARIEAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|134099882|ref|YP_001105543.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
gi|133912505|emb|CAM02618.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
Length = 234
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R + + L +AGY V +G +A E L++ D+++P + G+E
Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E ++ V+ +T + + KPF R+LV V +L
Sbjct: 70 VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 125
>gi|194364602|ref|YP_002027212.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|194347406|gb|ACF50529.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K YE V + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR + L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|156740962|ref|YP_001431091.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156232290|gb|ABU57073.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 236
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ +R L L + G+ VV +G A R E L++ D++MPEM
Sbjct: 1 MS-TILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVILDLMMPEMG 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R + V+ +T ++KPF++R+L+ + +L
Sbjct: 60 GYEFLRAF-AKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRR 118
>gi|115376427|ref|ZP_01463663.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
DW4/3-1]
gi|310823253|ref|YP_003955611.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
gi|115366559|gb|EAU65558.1| transcriptional regulatory protein CpxR [Stigmatella aurantiaca
DW4/3-1]
gi|309396325|gb|ADO73784.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1]
Length = 226
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD M L + LG+ G V +G + P+ +L D++MP MD
Sbjct: 1 MPTRVLLIDDDTRMYELLAQYLGQNGISVAHAPDGGRGLAALEGSPYDAVLLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++ +T L+KPF R+L+ + +L
Sbjct: 61 GLEVCKRIRAKT-QVPILMLTARGDETDRVVGLELGADDYLAKPFSPRELLARLRAVLRR 119
>gi|329849066|ref|ZP_08264094.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
biprosthecum C19]
gi|328844129|gb|EGF93698.1| diguanylate cyclase GGDEF domain protein [Asticcacaulis
biprosthecum C19]
Length = 747
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ + L GY+VV G A ++V L+L D++MP++DG
Sbjct: 10 SGTILVVDDNPVNLGLVADHLELRGYQVVVALGGNEALERVAFARPDLVLLDVMMPDIDG 69
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E RR D+ V+F+T V A +SKPF + +L+ V L
Sbjct: 70 FETCRRLKAQADYKDIPVIFMTALTDVDSKVAGFAAGGVDYVSKPFQIEELLARVQTHLA 129
Query: 120 IK 121
++
Sbjct: 130 LR 131
>gi|167760669|ref|ZP_02432796.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
gi|167661556|gb|EDS05686.1| hypothetical protein CLOSCI_03054 [Clostridium scindens ATCC 35704]
Length = 235
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ ++ + L V +G A + F L + DI++P++
Sbjct: 1 MSEKILVVDDEKEIADLIEVYLQNENLNVYKFYSGTEALAHMESVDFDLAILDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + E ++ +T ++KPF +LV V L
Sbjct: 61 GLSICQIMREKGCACPIIMLTAKDEETDKITGLMLGADDYITKPFRPLELVARVKAQLRR 120
>gi|153801748|ref|ZP_01956334.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-3]
gi|153825707|ref|ZP_01978374.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
gi|254291241|ref|ZP_04962036.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
gi|124122713|gb|EAY41456.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-3]
gi|149740644|gb|EDM54753.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae MZO-2]
gi|150422805|gb|EDN14757.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae AM-19226]
Length = 1177
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|15612935|ref|NP_241238.1| two-component response regulator [Bacillus halodurans C-125]
gi|10172985|dbj|BAB04091.1| two-component response regulator [Bacillus halodurans C-125]
Length = 222
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + R L L GYE + +G+ + + + L+L D+++PE+ G+E
Sbjct: 3 RILIIEDEKKIARVLQLELEHEGYETDAAFSGSDGLETFQAHAWDLVLLDVMLPELSGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ RR DP ++ +T ++ ++KPF + +L+ V L
Sbjct: 63 VLRRIRMTDPVTPIILLTARNSIPDKVSGLDLGANDYITKPFEIEELLARVRACLR 118
>gi|304320850|ref|YP_003854493.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
HTCC2503]
gi|303299752|gb|ADM09351.1| phosphate regulon response regulator PhoB [Parvularcula bermudensis
HTCC2503]
Length = 230
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + L L + GYE + +G A ++ E L++ D ++P++ GIE
Sbjct: 5 RILIVEDEETIAGLLEYNLSREGYETLIAEDGEEALIQIEESKPDLIVLDWMLPKVSGIE 64
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T A + KPF + +L + + +L
Sbjct: 65 VCRRLRMKPETEGIPIILLTARAEEGDRVRGLDTGADDYVVKPFSVSELSSRIKAVLRR 123
>gi|312131620|ref|YP_003998960.1| histidine kinase [Leadbetterella byssophila DSM 17132]
gi|311908166|gb|ADQ18607.1| histidine kinase [Leadbetterella byssophila DSM 17132]
Length = 1299
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED++D R +L+ L + + + NG A++KV L+++DI MP M G+
Sbjct: 1050 EKILVVEDNEDFRFYLLDNLREE-FALEEARNGEEAWEKVLSYHPDLIVSDINMPGMSGL 1108
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ + V+ +T ++ + + + + KPF++ L+ ++ L
Sbjct: 1109 ELCRKIRRDPRTKHIPVILLTAISSDSAQIEGLDSGASDYIIKPFNVELLLTKLRTQLKQ 1168
Query: 121 KN 122
K+
Sbjct: 1169 KS 1170
>gi|302867311|ref|YP_003835948.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315506283|ref|YP_004085170.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|302570170|gb|ADL46372.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315412902|gb|ADU11019.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 246
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + +G +A R+ ++ D+++P++DG +
Sbjct: 21 RVLVVDDEPTLTDLLSMALRYEGWQVATAGSGMAAVTTARQFRPDAVVLDVMLPDLDGFQ 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E P + V+F+T AV ++KPF L +++ + LL
Sbjct: 81 VLRRLREQFPSVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 137
>gi|91228317|ref|ZP_01262246.1| sensory box sensor histidine kinase/response regulator [Vibrio
alginolyticus 12G01]
gi|91188133|gb|EAS74436.1| sensory box sensor histidine kinase/response regulator [Vibrio
alginolyticus 12G01]
Length = 1128
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G V +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 840
>gi|30020626|ref|NP_832257.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
gi|206971406|ref|ZP_03232356.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218236069|ref|YP_002367236.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228921244|ref|ZP_04084572.1| Sensor histidine kinase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228958792|ref|ZP_04120503.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229070036|ref|ZP_04203308.1| Sensor histidine kinase [Bacillus cereus F65185]
gi|229079729|ref|ZP_04212262.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
gi|229109963|ref|ZP_04239543.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
gi|229127905|ref|ZP_04256890.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
gi|229145142|ref|ZP_04273534.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
gi|229150755|ref|ZP_04278969.1| Sensor histidine kinase [Bacillus cereus m1550]
gi|229178880|ref|ZP_04306240.1| Sensor histidine kinase [Bacillus cereus 172560W]
gi|29896178|gb|AAP09458.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
gi|206733391|gb|EDZ50563.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218164026|gb|ACK64018.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228604645|gb|EEK62106.1| Sensor histidine kinase [Bacillus cereus 172560W]
gi|228632842|gb|EEK89457.1| Sensor histidine kinase [Bacillus cereus m1550]
gi|228638340|gb|EEK94778.1| Sensor histidine kinase [Bacillus cereus BDRD-ST24]
gi|228655549|gb|EEL11402.1| Sensor histidine kinase [Bacillus cereus BDRD-Cer4]
gi|228673484|gb|EEL28748.1| Sensor histidine kinase [Bacillus cereus Rock1-15]
gi|228703569|gb|EEL56022.1| Sensor histidine kinase [Bacillus cereus Rock4-2]
gi|228713079|gb|EEL64982.1| Sensor histidine kinase [Bacillus cereus F65185]
gi|228800889|gb|EEM47795.1| Sensor histidine kinase [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228838414|gb|EEM83727.1| Sensor histidine kinase [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A KV L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|284051798|ref|ZP_06382008.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
Length = 558
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD + L L Y V NG A + + L+L D++MP M G
Sbjct: 94 KILIVDDDPINLQVLANYLYLENYAVTQATNGMEALEILESGFIPDLILLDVMMPRMTGY 153
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E P L +M +T ++ LSKP + +L+ + + I
Sbjct: 154 EVTEKIREDWPPHQLPIMMLTAKNRISDLVVGLELGANDYLSKPLNKEELLARIKTHIRI 213
Query: 121 K 121
K
Sbjct: 214 K 214
>gi|265764893|ref|ZP_06093168.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
gi|263254277|gb|EEZ25711.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L + GY + +GA R F L+++DIV+P+MDG EL
Sbjct: 4 ILIIEDEQRVADLLRAGLEENGYNCLVAYDGAMGLRMFRANTFDLVISDIVLPKMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +P + ++ +T + D + KPF R+L + LL K
Sbjct: 64 CKEIRAANPAIPILMLTALGSTDDKLDGFDAGADDYMVKPFDFRELYARIRILLKRK 120
>gi|183601802|ref|ZP_02963172.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|241190700|ref|YP_002968094.1| two-component system response regulator [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196106|ref|YP_002969661.1| two-component system response regulator [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219408|gb|EDT90049.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|240249092|gb|ACS46032.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250660|gb|ACS47599.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295793689|gb|ADG33224.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis V9]
Length = 236
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 56/115 (48%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ +D+ +R L+ +L AGYEV + +G+ A + + +++ D+++P++DG +
Sbjct: 1 MVVDDEPSIRELLVASLHFAGYEVETAASGSEAIEVISRTKPDMIILDVMLPDIDGFTVT 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+F+T ++KPF L ++V + +L
Sbjct: 61 RRIRQEGITAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 115
>gi|169630671|ref|YP_001704320.1| DNA-binding response regulator MtrA [Mycobacterium abscessus ATCC
19977]
gi|169242638|emb|CAM63666.1| DNA-binding response regulator MtrA [Mycobacterium abscessus]
Length = 225
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +DD + L L G+E ++G A VRE L+L D+++P M+
Sbjct: 1 MRQRILVVDDDASLAEMLTIVLRGEGFETAVVSDGTQALTAVRELRPDLVLLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R D + ++ +T + KPF ++LV + L
Sbjct: 61 GIDVCRVLRS-DSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRR 119
>gi|83589678|ref|YP_429687.1| two component transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83572592|gb|ABC19144.1| two component transcriptional regulator, winged helix family
[Moorella thermoacetica ATCC 39073]
Length = 256
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ +R+ + L K G V G +++ ++ + LL+ D++MP+ DG
Sbjct: 34 RVLVADDEAGLRQLVRLYLEKEGMIVGEAATGRQTLERLHQDKYDLLILDLMMPDGDGWT 93
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI-KN 122
+ R DL ++ +T ++KPF R+LV V LL +N
Sbjct: 94 VCREVRREM-DLPIIMLTARGEEMDRLLGFELGADDYVTKPFSPRELVARVKALLRRARN 152
>gi|77359551|ref|YP_339126.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125]
gi|76874462|emb|CAI85683.1| phosphate regulon transcriptional regulatory protein phoB
[Pseudoalteromonas haloplanktis TAC125]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ +D+ +R L+ L + G++ + + SA + E ++L D ++P
Sbjct: 1 MSRKVLVVDDEAPIREMLVFVLEQNGFQAIEAEDYDSAIAAMVEPYPDMVLLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++A++ + + ++ +T ++KPF ++L+ + ++
Sbjct: 61 GIQIAKKFKQNEYTRAIPIIMLTARGEEEDKVRGLEVGADDYVTKPFSPKELMARIKAVI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323498262|ref|ZP_08103264.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
gi|323316690|gb|EGA69699.1| DNA-binding response regulator GltR [Vibrio sinaloensis DSM 21326]
Length = 240
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
MN +IL+ +DD+++R L + L K+GY+V + +G + + L+L D+++P
Sbjct: 1 MNARILVVDDDEEIRELLDEYLTKSGYQVATVGDGEALKQHLEVHGYPDLVLLDVMLPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L + + ++ +T + ++KPF+ R LV + +L
Sbjct: 61 DGFTLCQYIRRE-SSVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|294791476|ref|ZP_06756633.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
gi|294457947|gb|EFG26301.1| DNA-binding response regulator PhoP [Scardovia inopinata F0304]
Length = 249
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I++ +D+ +R + +L +G++V + NG A D + + L++ D+++P++DG
Sbjct: 8 TIVVVDDEPSIRDLVSASLHFSGFDVTTATNGTEAIDVIMQTNPDLIVMDVMLPDIDGFT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+F+T ++KPF L ++V + +L
Sbjct: 68 VTRRIRQQGMEAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124
>gi|294812995|ref|ZP_06771638.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294325594|gb|EFG07237.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 250
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MD
Sbjct: 26 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMD 84
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 85 GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 144
>gi|269966938|ref|ZP_06181010.1| sensory box sensor histidine kinase/response regulator [Vibrio
alginolyticus 40B]
gi|269828421|gb|EEZ82683.1| sensory box sensor histidine kinase/response regulator [Vibrio
alginolyticus 40B]
Length = 1128
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G V +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 786 ELRETHDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 840
>gi|332708796|ref|ZP_08428767.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
gi|332352338|gb|EGJ31907.1| two component transcriptional regulator, winged helix family
[Lyngbya majuscula 3L]
Length = 245
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAISELVTINLEMAGYDVSQAMDGIKGQALALQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 121
>gi|326332055|ref|ZP_08198340.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
Broad-1]
gi|325950193|gb|EGD42248.1| DNA-binding response regulator RegX3 [Nocardioidaceae bacterium
Broad-1]
Length = 225
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ L L K G+EV +G A + ++L D+++P +
Sbjct: 1 MT-RVLVVEDEASYSEALSYMLRKEGFEVAVAEDGTDALKEFDRNGADIVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + V+ +T ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQIRA-TSSVPVIMVTAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRR 118
>gi|268316158|ref|YP_003289877.1| response regulator receiver modulated serine phosphatase
[Rhodothermus marinus DSM 4252]
gi|262333692|gb|ACY47489.1| response regulator receiver modulated serine phosphatase
[Rhodothermus marinus DSM 4252]
Length = 371
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +RR L L K Y V S NG A V EE L+++DI+MP+MDG L
Sbjct: 6 ILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEEIPDLIISDIMMPKMDGFAL 64
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + +F+T A ++KPF + L+ + RLL
Sbjct: 65 QQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPFDIDQLLARIERLLER 122
>gi|307151820|ref|YP_003887204.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306982048|gb|ADN13929.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 250
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 7/128 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54
+IL+ ED+D +R ++ AL + GYEV S ++G SA + ++ E+ F LL+ D+
Sbjct: 18 THRILVVEDEDVIRDMVVLALEEEGYEVKSASDGRSALELLQGSDAVESEKLFDLLVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P ++G+++ R + ++ ++ + L+KPF +R+LV
Sbjct: 78 MLPSVNGLDICRLIRYQGNTIPILILSAKVSETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIKN 122
LL ++
Sbjct: 138 RALLRRQS 145
>gi|118587242|ref|ZP_01544670.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
gi|118432384|gb|EAV39122.1| DNA-binding response regulator [Oenococcus oeni ATCC BAA-1163]
Length = 244
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+VV+ +G A + E L+L D ++PE++
Sbjct: 8 MS-KILVVDDEKPISDVIKFNLQKEGYDVVTAFDGREALEVFASENPDLVLLDQMLPEIE 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + V+ +T + ++KPF R+LV V L
Sbjct: 67 GTEVLRQIRS-NSSTPVIIVTAKDSEIDKVVGLEMGADDYVTKPFSNRELVARVKANLRR 125
Query: 121 KN 122
++
Sbjct: 126 QD 127
>gi|270208660|ref|YP_003329431.1| putative response regulator protein [Sinorhizobium meliloti]
gi|76880934|gb|ABA56104.1| putative response regulator protein [Sinorhizobium meliloti]
Length = 246
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD +R+ L + + GY V +G + + ++P ++L D+++P DG+
Sbjct: 9 EHILVVDDDSRIRQMLSRYFEEEGYRVSLAGDGQEMRECLDKQPVDVILLDLMLPGEDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR D+ ++ +TG + V ++KPFHLR+++ V +L +
Sbjct: 69 TLARDIRAR-SDVPIIMLTGRSDVVDRVVGLEVGADDYIAKPFHLREVLARVRGVLRRR 126
>gi|269103903|ref|ZP_06156600.1| two-component system response regulator OmpR [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163801|gb|EEZ42297.1| two-component system response regulator OmpR [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG+
Sbjct: 6 KILVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARENFHLMVLDLMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 66 ICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|255526521|ref|ZP_05393430.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296187630|ref|ZP_06856024.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255509771|gb|EET86102.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296047587|gb|EFG87027.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 230
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D+ ++ + L + K G+ VVS NG A DK ++L DI+MP +D
Sbjct: 1 MDKNILIADDNIEIIKILKPYVEKEGFTVVSALNGKEALDKFDVCNPQIVLLDIMMPIID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ IT + A + KPF ++V + +L
Sbjct: 61 GMEVCKSIR-FKSNTPIIMITAKSEDADKILGLNSGADDYIVKPFSPGEVVARIKAILRR 119
>gi|170693452|ref|ZP_02884611.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170141607|gb|EDT09776.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 220
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A +P+ L+L D+ +P+ DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|166031390|ref|ZP_02234219.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
27755]
gi|166028795|gb|EDR47552.1| hypothetical protein DORFOR_01079 [Dorea formicigenerans ATCC
27755]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G + +K ++ +SL + D+++P +D
Sbjct: 1 MS-KILIVEDEETIADLEKDYLELSGFEVEVANDGETGLEKALKDEYSLFILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKKIREE-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|153811407|ref|ZP_01964075.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
gi|149832534|gb|EDM87618.1| hypothetical protein RUMOBE_01799 [Ruminococcus obeum ATCC 29174]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ L L Y V NG A + +++ L + D+++P++D
Sbjct: 1 MNEKILVVDDEKEIADLLEVYLKNDNYIVHKYYNGIEALECIQKTEIDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E V+ +T ++KPF+ +++ V L
Sbjct: 61 GFRICQKIRENYY-FPVIMLTAKIDDGDKIMGLTIGADDYITKPFNPLEVIARVKTQLRR 119
>gi|229819736|ref|YP_002881262.1| two component transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229565649|gb|ACQ79500.1| two component transcriptional regulator, winged helix family
[Beutenbergia cavernae DSM 12333]
Length = 227
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD + + L ++ V C++GA A ++ REE L+L D+++P D
Sbjct: 1 MNAKILVVDDDPAISEMIGIVLESDDFDAVFCDDGALAVERFREEKPDLVLLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R + ++ +T + ++KPF ++LV V L
Sbjct: 61 GIEVCREIR-RTSGVPIVMLTAKSDTVDVVRGLEAGADDYIAKPFKPKELVARVRARLR 118
>gi|254507357|ref|ZP_05119493.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
gi|219549817|gb|EED26806.1| osmolarity response regulator [Vibrio parahaemolyticus 16]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|158340812|ref|YP_001521980.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
[Acaryochloris marina MBIC11017]
gi|158311053|gb|ABW32666.1| two-component transcriptional regulator/diguanylate cyclase (GGDEF)
[Acaryochloris marina MBIC11017]
Length = 792
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+ + L L Y V +G +A + V + L+L+D+++P +DG+
Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + ++ +TG + + KPF +L V LL
Sbjct: 62 LCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKPFDPEELAARVRALLRR 118
Score = 106 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +DD + + G EV+ + ++ + P LLL D+ MPE+ GI+
Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L ++F+T + A +SKP +LV + L
Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRLER 607
>gi|330962192|gb|EGH62452.1| DNA-binding response regulator GltR [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 245
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V + +GA E LL+ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLDTYLSRAGFQVRTVGDGAGFRQAFNEASSDLLILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + P + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCKWVRQHPRQPHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|313895068|ref|ZP_07828625.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
gi|320529740|ref|ZP_08030818.1| response regulator receiver domain protein [Selenomonas artemidis
F0399]
gi|312975963|gb|EFR41421.1| response regulator ArlR [Selenomonas sp. oral taxon 137 str. F0430]
gi|320137979|gb|EFW29883.1| response regulator receiver domain protein [Selenomonas artemidis
F0399]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RFL L G+E + +NG AY+++ +E F ++L D+++P MDGIE
Sbjct: 6 RVLIVEDEARIARFLQMELEHEGFEAETESNGTRAYERIIQEKFDIVLLDVMLPGMDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR E+ ++ ++ +T AV + ++KPF + +L+ +N L ++
Sbjct: 66 ICRRVREI-SNVPIIMLTARDAVEDRVEGLDIGADDYMTKPFAVPELIARLNNALRRRD 123
>gi|310659856|ref|YP_003937577.1| DNA-binding response regulator in two-component regulatory system
with phor (or crec) [Clostridium sticklandii DSM 519]
gi|308826634|emb|CBH22672.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Clostridium sticklandii]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+AED+ + + L K GYE+++ +G A K E L++ DI++P MD
Sbjct: 1 MKNRVLIAEDEKPISDIIKFNLEKEGYEIITAYDGEDALKKALNEELELIILDIMLPSMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E + ++ +T ++KPF +R+LV V +
Sbjct: 61 GFEICKRVREK-SSVPIIMVTAKEEEVDKILGLELGADDYITKPFSIRELVARVKANVRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|149202581|ref|ZP_01879553.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius sp. TM1035]
gi|149143863|gb|EDM31897.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius sp. TM1035]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ R L L G+ V++ +NG A V E P +++ D +MP + GIE
Sbjct: 7 TVLLVEDEPAQREVLGYNLQADGFHVLTASNGEEALLMVAEMPPDIIVLDWMMPNVSGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ + + KP+ L +L+ V L
Sbjct: 67 VCRQLKTRSETRGIPIIMLSARSEEVDRVRGLETGADDYVIKPYSLVELMARVRAQLRR 125
>gi|159897248|ref|YP_001543495.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus ATCC 23779]
gi|159890287|gb|ABX03367.1| multi-sensor signal transduction histidine kinase [Herpetosiphon
aurantiacus ATCC 23779]
Length = 531
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L + L +AGY +G A + ++ L+L D++MPEMDG +
Sbjct: 8 ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQVPDLILLDVMMPEMDGYQT 67
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + P + ++F++ A ++KP + +L+ + LL +K+
Sbjct: 68 LQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNRDELLARMRVLLRLKH 127
>gi|323497026|ref|ZP_08102049.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
gi|323317870|gb|EGA70858.1| osmolarity response regulator [Vibrio sinaloensis DSM 21326]
Length = 239
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRENFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|313204107|ref|YP_004042764.1| histidine kinase [Paludibacter propionicigenes WB4]
gi|312443423|gb|ADQ79779.1| histidine kinase [Paludibacter propionicigenes WB4]
Length = 1298
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + R F++ L Y V+ NG +K + L++TD++MPEM G E
Sbjct: 1052 KVLVVEDNAEFRMFIMGEL-MEKYHVIEAANGKDGLEKALKHQPDLIITDVMMPEMSGTE 1110
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + + V+ +T + + +SKPF++ L+ ++ L+ +
Sbjct: 1111 LCRLLKKNIQTSHIPVILLTAKTSDKAQIEGFEAGADAYISKPFNMDILLLRIHHLIEQQ 1170
Query: 122 N 122
N
Sbjct: 1171 N 1171
>gi|149909265|ref|ZP_01897921.1| Response regulator [Moritella sp. PE36]
gi|149807582|gb|EDM67530.1| Response regulator [Moritella sp. PE36]
Length = 228
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ +R L AL + G++VV + A D++ E +L+L D ++P
Sbjct: 1 MSKRILVVEDELAIREMLCFALEQKGFDVVEAGDYNEAVDRLVEPYPNLILLDWMLPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + V+ +T ++KPF ++L+ +N ++
Sbjct: 61 GIKYIKHLKSQPHLSAIPVVMLTARGEEEDKVKGLEVGADDYITKPFSPKELIARLNAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|159900669|ref|YP_001546916.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159893708|gb|ABX06788.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 52/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ + + + G+ V +G A ++R E + LL+ DI +P +DG
Sbjct: 2 QRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T A + KPF R+LV V LL
Sbjct: 62 GVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRR 119
>gi|295116020|emb|CBL36867.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SM4/1]
Length = 208
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL AED+ +R +K L G+ V C +G A D + + +++ DI+MP +DG+
Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREALDYLDSTDYDVVILDIMMPGIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R VM +T AVA L+KPF +L + LL
Sbjct: 62 VLRTLRSRGNTAPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118
>gi|229190642|ref|ZP_04317638.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
gi|228592775|gb|EEK50598.1| Sensor histidine kinase [Bacillus cereus ATCC 10876]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A K+ L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKLYTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|255284237|ref|ZP_05348792.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
gi|255265190|gb|EET58395.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L +E V C NG A V EE L + D+++P++D
Sbjct: 1 MPGKILIVDDEREIADVIGLYLKNENFEAVKCYNGKDALAAVNEEKPDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E V+ +T + + KPF+ +L+ V L
Sbjct: 61 GFTILQKIRETY-TFPVIMLTAKTEYMDKINGLTLGADDYIEKPFNPLELIARVKAQLRR 119
>gi|222095607|ref|YP_002529664.1| response regulator [Bacillus cereus Q1]
gi|221239665|gb|ACM12375.1| response regulator [Bacillus cereus Q1]
Length = 234
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG +
Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + L KPF +LV V LL
Sbjct: 73 VCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|218439789|ref|YP_002378118.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218172517|gb|ACK71250.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 234
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + + + L + + +G A + + L++ D+++P +D
Sbjct: 1 MN--ILIVEDEPEIAQLIRETLERENFSCQIAKSGTQALEIFGQLQPDLIILDLMLPGLD 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + D ++ +T + L KPF +LV V LL
Sbjct: 59 GLEVCTRIRQKPGAKDPYILMLTARGEEIDRIIGLSTGADDYLVKPFSPIELVARVRALL 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|148378368|ref|YP_001252909.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153939020|ref|YP_001389733.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|168177708|ref|ZP_02612372.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|168181227|ref|ZP_02615891.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|170754669|ref|YP_001780018.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|170758790|ref|YP_001785702.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|226947596|ref|YP_002802687.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|148287852|emb|CAL81918.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152934916|gb|ABS40414.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|169119881|gb|ACA43717.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169405779|gb|ACA54190.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|182670720|gb|EDT82694.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182675277|gb|EDT87238.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226842593|gb|ACO85259.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ ++R + L GY + +NG A + ++ L++ DI+MP+M
Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E + ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIEACMKIREEKS-MPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|90414588|ref|ZP_01222561.1| putative DNA-binding response regulator PhoB [Photobacterium
profundum 3TCK]
gi|90324304|gb|EAS40873.1| putative DNA-binding response regulator PhoB [Photobacterium
profundum 3TCK]
Length = 229
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + A +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQPIEAEDYDDALEKICEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|330468634|ref|YP_004406377.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328811605|gb|AEB45777.1| two component transcriptional regulator [Verrucosispora maris
AB-18-032]
Length = 247
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + +G A R+ ++ D+++P++DG E
Sbjct: 22 RVLVVDDEPTLTDLLSMALRYEGWQVRTAGDGMGAIRAARQFQPDAVVLDVMLPDLDGFE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E D + V+F+T AV ++KPF L +++ + LL
Sbjct: 82 VLRKLREDDATVPVLFLTARDAVEERVAGLTVGGDDYVTKPFSLEEVIARLRALLRR 138
>gi|309811547|ref|ZP_07705327.1| response regulator MprA [Dermacoccus sp. Ellin185]
gi|308434490|gb|EFP58342.1| response regulator MprA [Dermacoccus sp. Ellin185]
Length = 231
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++R L ++ AG++V G+ + F L + D+++P+MDG
Sbjct: 7 RILIVEDDTNIRELLATSMKFAGFDVSVAGTGSEGLALAATQEFDLAVLDVMLPDMDGFA 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E +L ++F+T +V ++KPF L ++V + +L
Sbjct: 67 VTSRLREGGRELPIVFLTARDSVDDTVKGLTVGGDDYITKPFSLEEVVARIRAVLRR 123
>gi|218248212|ref|YP_002373583.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|218168690|gb|ACK67427.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
Length = 250
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54
N +IL+ ED+D +R + AL + GYEV++ ++G +A ++ E F L++ D+
Sbjct: 18 NHRILVVEDEDVIRDMITIALEEQGYEVITASDGRTALSLLQDVATLGTESGFDLVVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G+++ R + + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 MLPQVNGLDICRLLRYNNNIVPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIKN 122
L+ ++
Sbjct: 138 RALIRRQD 145
>gi|118443624|ref|YP_877546.1| transcriptional regulator [Clostridium novyi NT]
gi|118134080|gb|ABK61124.1| transcriptional regulatory protein [Clostridium novyi NT]
Length = 232
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q +L+ +DD ++R + L G +V +G A ++E+ L+L DI+MP+M
Sbjct: 1 MSQNNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI+ + E D+ ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|33355848|gb|AAQ16268.1| response regulator [Enterococcus faecalis]
gi|77380195|gb|ABA71727.1| VanRG [Enterococcus faecalis]
Length = 235
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY+V NG A V E L + D+++P++D
Sbjct: 1 MNEKILIVDDEKEIADLIELYLKNDGYKVYKFYNGIDALKCVESEKMDLAILDVMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T A ++KPF+ ++ V L
Sbjct: 61 GFHICQKIRERYFY-PIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKTQLRR 119
>gi|148263402|ref|YP_001230108.1| two component transcriptional regulator [Geobacter uraniireducens
Rf4]
gi|146396902|gb|ABQ25535.1| two component transcriptional regulator, winged helix family
[Geobacter uraniireducens Rf4]
Length = 243
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ ILL ED+ + R + L Y V G A ++VR E F L++ D+++P
Sbjct: 1 MNEDKPHILLVEDEIHLARGICFNLELENYRVSHVETGEDALERVRYERFDLIILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DG + R +LD + V+ +T + L+KPF+L + + V +
Sbjct: 61 GIDGFAVCREIRQLDARVPVLMLTARSDERDRIAGLTGGADDYLTKPFNLNEFLLRVGGM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|228919209|ref|ZP_04082580.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840451|gb|EEM85721.1| hypothetical protein bthur0011_2380 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 238
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + +G A + +SL++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSLVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>gi|255657155|ref|ZP_05402564.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296452007|ref|ZP_06893722.1| response regulator [Clostridium difficile NAP08]
gi|296879598|ref|ZP_06903577.1| response regulator [Clostridium difficile NAP07]
gi|296259198|gb|EFH06078.1| response regulator [Clostridium difficile NAP08]
gi|296429401|gb|EFH15269.1| response regulator [Clostridium difficile NAP07]
Length = 223
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ M+ +++ + K GY V+ ++G A ++ L++ D++MP +DG
Sbjct: 3 KILVVEDEKRMQSIIVEYMQKGGYTCVTADDGVEALTILKSNNIDLMILDVMMPYLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + E+ ++ ++ +T ++KPF + L+ +VN LL
Sbjct: 63 VCRVSREMT-NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118
>gi|78223656|ref|YP_385403.1| two component, sigma54 specific, Fis family transcriptional
regulator [Geobacter metallireducens GS-15]
gi|78194911|gb|ABB32678.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter metallireducens GS-15]
Length = 461
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 60/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +RR L L + GYEV++ +G + +L++TD+ MP M G +
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E PD V+ IT F AV ++ ++KPF+ L V + L ++
Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKALDMQ 127
>gi|317471872|ref|ZP_07931207.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316900645|gb|EFV22624.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 219
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ ED+ + + L AGY +GA A D++ +E F L+L DI++PE+D
Sbjct: 1 MN-RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLEQEGFDLILLDIMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL L ++ V+F+T A L+KPF + +L+ V +L
Sbjct: 60 GYELMDYIRPL--EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117
>gi|291299613|ref|YP_003510891.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290568833|gb|ADD41798.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 225
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + L GY V N+G + + R+ P+ +++ DI++P M+G +
Sbjct: 2 RLLIVEDEKRLADVVAAGLTAEGYGVDVANDGTTGFSMARQNPYDVIILDIMLPGMNGYQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T D L+KPF L + LL
Sbjct: 62 VCRKLREAEVRTPILMLTAKDGEHDEADGLDLGADDYLTKPFSFVVLQARIRALLRR 118
>gi|126731218|ref|ZP_01747025.1| phosphate regulon transcriptional regulatory protein PhoB
[Sagittula stellata E-37]
gi|126708129|gb|EBA07188.1| phosphate regulon transcriptional regulatory protein PhoB
[Sagittula stellata E-37]
Length = 229
Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ R L L G+ V S NG A + EE +++ D ++P + GIE
Sbjct: 7 TVLLVEDEPAQREVLSYNLEAEGFRVASAGNGEEALLMMAEENPDIVVLDWMLPNVSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ ++ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRQIKTKPETRNVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 125
>gi|326383263|ref|ZP_08204951.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
gi|326198013|gb|EGD55199.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + L L G+E +G A VRE L+L D+++P M+
Sbjct: 1 MKPRILVVDDDAALAEMLTIVLKNEGFEPFVVGDGTQALTAVREVRPDLVLLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R D + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVCRVLRS-DSGVPIVMLTAKSDTVDVVLGLESGADDYMVKPFKPKELVARIRARLRR 119
>gi|153875667|ref|ZP_02003366.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152067869|gb|EDN66634.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 365
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D + L+ L + V +G A ++V L+L D++MP MDG E
Sbjct: 10 LIVDDIPTNLKLLMNVLRHLDFTVQVAQDGEDALEQVAYAKPDLILLDVMMPGMDGFETC 69
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+F+T ++KP +++ VN L ++
Sbjct: 70 RRLKADEKTHDIPVIFMTALTETVDKVKGFEIGAVDYITKPVQPEEVLARVNTHLKLR 127
>gi|13473723|ref|NP_105291.1| two-component response regulator [Mesorhizobium loti MAFF303099]
gi|14024474|dbj|BAB51077.1| two-component response regulator [Mesorhizobium loti MAFF303099]
Length = 230
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD +R + AL KAG + + +GA+A ++ L++ DI MPEMD
Sbjct: 1 MPHHILVADDDPHIREVICFALEKAGMKTLGVADGAAALQEIGRRAPDLVVLDIGMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR D+ V+F++ ++KPF R+LV VN +L
Sbjct: 61 GLEVCRRLR-HTSDVPVLFLSARDEEIDRILGLEMGGDDYVTKPFSPRELVARVNVIL 117
>gi|260775446|ref|ZP_05884343.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
coralliilyticus ATCC BAA-450]
gi|260608627|gb|EEX34792.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
coralliilyticus ATCC BAA-450]
Length = 1128
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ R L L GY V + NG A + V E L+L DI+MP M G ++
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVRTAKNGEEAVESVVHEKPELMLLDIMMPGMSGYQVC 784
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L V+ +T LSKPF+ ++L + LT
Sbjct: 785 EVLRKDYDHAQLPVIMLTALNQPDDRVRGFEAGANDYLSKPFNKQELAARITAHLT 840
>gi|261404369|ref|YP_003240610.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261280832|gb|ACX62803.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MNQ I + +DD +R + L K GY V +D R P + + DI++P
Sbjct: 1 MNQTYLIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG EL RR ++ ++ I+ + + + KPF R+LV + R L
Sbjct: 61 MDGFELCRRIRAE-AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQL 119
Query: 119 TI 120
+
Sbjct: 120 SR 121
>gi|146282783|ref|YP_001172936.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
gi|145570988|gb|ABP80094.1| two-component response regulator GltR [Pseudomonas stutzeri A1501]
gi|327481121|gb|AEA84431.1| two-component response regulator GltR [Pseudomonas stutzeri DSM
4166]
Length = 244
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +DD ++R L L ++G++V +GA + EP L++ D+++P+ DG
Sbjct: 6 KNILLVDDDQEIRELLQTYLSRSGFQVRGVPDGAQFRSALCAEPADLVILDVMLPDEDGF 65
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + + ++ +T + A L KPF R+L+ + LL
Sbjct: 66 SLCRWIRQHERLASMPIIMLTASSDEADRVVGLELGADDYLGKPFSPRELLARIKALLRR 125
>gi|260063103|ref|YP_003196183.1| two-component system, transcriptional regulatory protein
[Robiginitalea biformata HTCC2501]
gi|88784672|gb|EAR15842.1| two-component system, transcriptional regulatory protein
[Robiginitalea biformata HTCC2501]
Length = 240
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L ++V NG ++K ++EPF + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNDFDVTLAKNGMEGFEKFKKEPFDVCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + + ++F+T L+KPF L+ ++ +L K
Sbjct: 65 FTLAKEIREKNDHIPIIFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLVKLKAILQRK 124
>gi|312142756|ref|YP_003994202.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
gi|311903407|gb|ADQ13848.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+K +L+ +DD +R L L G++ + ++EE +L+ DI++P+
Sbjct: 1 MNKKKVLIIDDDPHIREILDDYLNFEGFDAFLAEDTEKGLKILQEEKVDILILDIMLPDE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E ++ DL ++F++ ++KPF R++V + +L
Sbjct: 61 DGWEFCQKIRPEY-DLPIIFLSAKDKSVDKITGLELGADDYITKPFSPREVVARIKAVLR 119
Query: 120 IKN 122
N
Sbjct: 120 RYN 122
>gi|254421256|ref|ZP_05034974.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196188745|gb|EDX83709.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 227
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ ED++ + +F+ LG GYEV+ N+G S R+ L+L D +MP
Sbjct: 1 MSEDTVRILIVEDEEKLAKFVQLELGYEGYEVIVANDGLSGLMAARDSEPDLVLLDWMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G+E+ RR + V+ +T + + KPF + +L+ V
Sbjct: 61 GLTGVEVCRRLRATGAMMPVILLTAKDGIEDRVAGLDAGADDYVVKPFSIEELLARVRAH 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|89897137|ref|YP_520624.1| hypothetical protein DSY4391 [Desulfitobacterium hafniense Y51]
gi|89336585|dbj|BAE86180.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 237
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + + G+EVV+ ++G E +++ DI++P DG+
Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + ++ +T A ++KPF R+LV + +L
Sbjct: 66 LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121
>gi|229102593|ref|ZP_04233297.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
gi|228680820|gb|EEL34993.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
Length = 228
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGYD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|226326821|ref|ZP_03802339.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
gi|225204658|gb|EEG87012.1| hypothetical protein PROPEN_00681 [Proteus penneri ATCC 35198]
Length = 232
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIASDGEQALKLLDA-SVDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQNF-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSN 119
>gi|166364232|ref|YP_001656505.1| OmpR family two-component response regulator [Microcystis
aeruginosa NIES-843]
gi|166086605|dbj|BAG01313.1| two-component response regulator OmpR subfamily [Microcystis
aeruginosa NIES-843]
Length = 246
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ ++ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|15614371|ref|NP_242674.1| two-component response regulator [Bacillus halodurans C-125]
gi|10174426|dbj|BAB05527.1| two-component response regulator [Bacillus halodurans C-125]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ ++R + L K GY V+ ++G A D + + LL+ DI+MP +DG E+
Sbjct: 6 ILVADDEQEIRDLIAIHLEKEGYHVIKVSDGKEAVDVIGRQVIDLLILDIMMPNIDGYEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR+ E ++ ++F++ + ++KPF +LV VN L
Sbjct: 66 ARQIREQH-NMPIIFLSAKTSDFDKVQGLVIGADDYMTKPFAPIELVARVNAQLRR 120
>gi|318042529|ref|ZP_07974485.1| two-component system response regulator [Synechococcus sp. CB0101]
Length = 233
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+A+DD ++ + + + G+ V S ++G A ++R++ F L + D MP M G
Sbjct: 7 NITILVADDDVNIAQLISMECEEEGFNVESVHDGQQALLQLRQKEFQLAILDWDMPLMSG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +R + + ++ +T V + L KPF++R+L+ V L+
Sbjct: 67 YDVCQRLRDTGNTIPILMVTAKDEVEDRVKALDAGADDYLCKPFNIRELLARVRALVRR 125
>gi|203284656|ref|YP_002222396.1| response regulatory protein [Borrelia duttonii Ly]
gi|201084099|gb|ACH93690.1| response regulatory protein [Borrelia duttonii Ly]
Length = 451
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++
Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEKIDAIISDLRMPQIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + +P++ + +T V D+ L+KP L L+ + R L
Sbjct: 60 GEELLKIVKDRNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALKK 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|119484444|ref|ZP_01619061.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
gi|119457918|gb|EAW39041.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
Length = 437
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L ++L AGYEV NG +A + +P L+L DI MP MDG E
Sbjct: 11 ILIVDDSPVHLKVLSESLVNAGYEVAVAINGETALKQALYDPPDLILLDIQMPGMDGFET 70
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++F+T A + L+KPF +++ + L IK+
Sbjct: 71 CHQLKAHPSTQAVPIIFMTALADTSSKIKGLKAGAVDYLTKPFQQEEVLARIKVHLQIKD 130
>gi|330504532|ref|YP_004381401.1| two component transcription regulator protein [Pseudomonas
mendocina NK-01]
gi|328918818|gb|AEB59649.1| two component transcription regulator protein [Pseudomonas
mendocina NK-01]
Length = 240
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +DD ++R+ L L AGY+ + G ++ E+ L++ D+++P
Sbjct: 1 MSRPDHILIVDDDPEIRQLLSTYLSDAGYQTCVASQGVEMRKRLEEQLIDLVVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R + ++ V+ +T + L KPF R+L+ + +L
Sbjct: 61 EDGLSLCRELR-VRSNIPVIMLTARGTLVDRIVGLEMGADDYLPKPFDPRELLARIKVVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|265755299|ref|ZP_06090069.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263234441|gb|EEZ20031.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1344
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|188584894|ref|YP_001916439.1| response regulator receiver protein [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349581|gb|ACB83851.1| response regulator receiver protein [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 66/122 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+K+L+ +D+ ++R L L GYE+ NG A +K+R + + L+L D+ +P ++
Sbjct: 1 MNKKLLIVDDEKNIRMTLKNCLSYEGYELEIALNGEEALEKLRTQDYDLVLLDLKLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + D+KV+ +T + V ++ ++KPF + VN +L+
Sbjct: 61 GLQVLEKVRDEGRDVKVIMMTAYGTVERAVNAMKLGAIDFINKPFSPNQIRALVNDVLSR 120
Query: 121 KN 122
N
Sbjct: 121 PN 122
>gi|219848680|ref|YP_002463113.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219542939|gb|ACL24677.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 226
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD + L +AGY V+ ++ S + + L+L DI+MP++D
Sbjct: 1 MN--ILVVDDDIPSAKLTSYVLEEAGYRVLRAHDATSIMQMIEQHNPDLILLDIMMPKID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ ++ ++F++ + + L KP+ +L+ V +L
Sbjct: 59 GFDVCRQIR-RSSEVPIIFLSARSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRR 117
Query: 121 KN 122
+N
Sbjct: 118 RN 119
>gi|219667004|ref|YP_002457439.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537264|gb|ACL19003.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 237
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD ++ + + G+EVV+ ++G E +++ DI++P DG+
Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + ++ +T A ++KPF R+LV + +L
Sbjct: 66 LCRRLRAVRM-IPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRR 121
>gi|291535098|emb|CBL08210.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
Length = 232
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + L + YEV+ +G +A D +E+ +L++ D++MP+
Sbjct: 1 MEKIKILVVDDESRMRKLVRDFLVREDYEVLEAGDGETALDIFYQEKNIALIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G E+ R E + ++ +T + +SKPF + LV V +L
Sbjct: 61 MNGWEVCREIRE-TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|255282430|ref|ZP_05346985.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
14469]
gi|255267014|gb|EET60219.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
14469]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ + + + +L + G EV +G A + + + ++L D+++P++D
Sbjct: 1 MAKQVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEALQMAKNKEYDMVLLDLMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GLSVCQQIRE-FSNVPIVMLTAKGDDMDKIMGLEYGADDYITKPFNILEVKARIKAIMRR 119
>gi|255102347|ref|ZP_05331324.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255308246|ref|ZP_05352417.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 223
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ M+ +++ + K GY ++ ++G A ++ L++ DI+MP +DG
Sbjct: 3 KILIVEDEKRMQSIIVEYMQKGGYTCITADDGVEALTILKSNNIDLMILDIMMPYLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + E+ ++ ++ +T ++KPF + L+ +VN LL
Sbjct: 63 VCRVSREMT-NIPIIILTAKGEEEDKLKGYEYGADDYITKPFSPKVLLAKVNALLRR 118
>gi|242280512|ref|YP_002992641.1| transcriptional regulator [Desulfovibrio salexigens DSM 2638]
gi|242123406|gb|ACS81102.1| two component transcriptional regulator, winged helix family
[Desulfovibrio salexigens DSM 2638]
Length = 232
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD +R L + L GYEV + +G ++V+ ++++ DI+MP DG+E+
Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ V+ +T +SKPF+ R+L+ + +L
Sbjct: 67 LRDLRP-HSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR 121
>gi|184200526|ref|YP_001854733.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
gi|183580756|dbj|BAG29227.1| two-component response regulator MtrA [Kocuria rhizophila DC2201]
Length = 228
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L +E V C +G+SA + R L+L D+++P MD
Sbjct: 1 MKARILVVDDDAALSEMIGIILASEDFEPVYCYDGSSAREVFRASDPDLILLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ ++ D+ V+ +T + A + KPF +LV V L
Sbjct: 61 GIQVCQQIRAE-SDVPVVMLTAKSDTADVVRGLEAGADDYVPKPFKPAELVARVKARLR 118
>gi|49481195|ref|YP_036138.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|196039763|ref|ZP_03107067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|49332751|gb|AAT63397.1| alkaline phosphatase synthesis response regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|196029466|gb|EDX68069.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|304413082|ref|ZP_07394555.1| Response regulator with a CheY-like receiver domain and a
winged-helix DNA-binding domain [Candidatus Regiella
insecticola LSR1]
gi|304283925|gb|EFL92318.1| Response regulator with a CheY-like receiver domain and a
winged-helix DNA-binding domain [Candidatus Regiella
insecticola LSR1]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ ++ N +A + L+L D ++P
Sbjct: 1 MTKRILVVEDEVAIREMLCLLLQQNGYQPLAAENYGNAVASLTGLLPDLVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L + V+ +T ++KPF +++V V ++
Sbjct: 61 GIQFIQHIRREMLTRSIPVIMLTARGEEEDRVCGLELGADDYITKPFSPKEVVARVRAMI 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|284040223|ref|YP_003390153.1| transcriptional regulator [Spirosoma linguale DSM 74]
gi|283819516|gb|ADB41354.1| two component transcriptional regulator, winged helix family
[Spirosoma linguale DSM 74]
Length = 236
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD ++ + + + L GY +G + L + D++MP+ DG
Sbjct: 3 TILLVEDDPNLGQLVQEYLTMKGYPTDRAIDGNQGLQLFMAGKYDLCIFDVMMPKKDGFT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ D+ ++F+T + ++KPF + +L+ + +L
Sbjct: 63 LAKEVRMDHRDVPIIFLTAKSMQEDTIQGFKAGADDYMTKPFSMEELLLRIQAILRR 119
>gi|227358160|ref|ZP_03842501.1| phosphate regulon transcriptional regulator (two-component response
regulator) [Proteus mirabilis ATCC 29906]
gi|227161496|gb|EEI46533.1| phosphate regulon transcriptional regulator (two-component response
regulator) [Proteus mirabilis ATCC 29906]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + + +A + + L+L D ++P
Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDTALSFLIDPYPDLVLLDWMIPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ ++ D+ ++ +T + KPF ++LV V +L
Sbjct: 61 GIQVIKQMKREINTRDIPIIMLTAKGEEEDKVKGLETGADDYVIKPFSPKELVARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|196047620|ref|ZP_03114827.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
gi|196021534|gb|EDX60234.1| DNA-binding response regulator ResD [Bacillus cereus 03BB108]
Length = 238
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDIALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|46199440|ref|YP_005107.1| two-component response regulator [Thermus thermophilus HB27]
gi|55981471|ref|YP_144768.1| response regulator [Thermus thermophilus HB8]
gi|46197066|gb|AAS81480.1| two-component response regulator [Thermus thermophilus HB27]
gi|55772884|dbj|BAD71325.1| response regulator [Thermus thermophilus HB8]
Length = 227
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY ++G + K RE +L++ D+++P MDGIE+
Sbjct: 9 ILIVEDEKDIARFIELELQAEGYRTEVAHDGITGLSKFREVSPNLVILDLMLPVMDGIEV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+R + ++ ++ +T V L KPF + +L+ V L
Sbjct: 69 AKRIRK-TSNVPILILTAKDRVEDKVAGLDAGADDYLVKPFSIEELLARVRAHLRR 123
>gi|298244434|ref|ZP_06968240.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297551915|gb|EFH85780.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 235
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +R L G++V NG A +E+ +++ D+++P DG+E+
Sbjct: 18 VLIVDDEPQVRDLLQMGFSYEGFQVFLATNGPDATQVAQEQQPDVVILDLMLPGYDGLEV 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR DL ++ +T + L+KPF R+L+ +L +
Sbjct: 78 TRRLRRSR-DLPIIMLTARDEIDDRVTGLDAGADDYLTKPFAFRELMARTRAVLRRR 133
>gi|291518725|emb|CBK73946.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 236
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL +D++++R + L GYEV+ +G +A V ++ L++ DI+MP
Sbjct: 1 MSKQKILTVDDNEEIRNIIKILLESEGYEVLEACDGEAALSMV-DDSIDLIILDIMMPGK 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ + E + ++F+T + LSKPF +L V LL
Sbjct: 60 SGLDVCKIIREKY-QMPILFLTAKGTDSDKSLGLLIGGDDYLSKPFSHAELTARVKSLLR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|237724088|ref|ZP_04554569.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229437548|gb|EEO47625.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1344
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGWELAQVRIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|229017295|ref|ZP_04174199.1| DNA-binding response regulator [Bacillus cereus AH1273]
gi|229023471|ref|ZP_04179968.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228737824|gb|EEL88323.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228743996|gb|EEL94094.1| DNA-binding response regulator [Bacillus cereus AH1273]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L K G++ +G A ++ E + + DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEKEGFQTYEAVDGLDALRRIEEVKVDMAILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDLCYELRKYY-DMPILMLTAKGETSQKIKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119
>gi|225022167|ref|ZP_03711359.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
ATCC 33806]
gi|305680419|ref|ZP_07403227.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
14266]
gi|224945100|gb|EEG26309.1| hypothetical protein CORMATOL_02201 [Corynebacterium matruchotii
ATCC 33806]
gi|305659950|gb|EFM49449.1| putative response regulator MprA [Corynebacterium matruchotii ATCC
14266]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + K+L+ +D+ ++ L +L G+EV + +G A + E + D++MP
Sbjct: 1 MKENSTKVLVVDDEPNIVELLTVSLKFQGFEVATATSGLQALEVAPEFKPDAFILDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG EL + L + V+F+T AV ++KPF L +++ + +
Sbjct: 61 GMDGFELLPKLRALGFEGPVLFLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|196047031|ref|ZP_03114250.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196022135|gb|EDX60823.1| DNA-binding response regulator [Bacillus cereus 03BB108]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|118581556|ref|YP_902806.1| two component transcriptional regulator [Pelobacter propionicus DSM
2379]
gi|118504266|gb|ABL00749.1| two component transcriptional regulator, winged helix family
[Pelobacter propionicus DSM 2379]
Length = 228
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ ED+ D+ L L K G+ +G S + R+ L++ D+++P M
Sbjct: 1 MKQRILIIEDERDLAELLAFNLEKEGFAPRCAFDGISGLEAARDSKPDLIVLDLMLPGML 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + + + V+ +T + KPF +R+L + +L
Sbjct: 61 GTEVCKALRKDTTTSRIPVLMVTAKGDEIDRVVGFELGADDYIVKPFSMRELCLRIRAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|296268488|ref|YP_003651120.1| winged helix family two component transcriptional regulator
[Thermobispora bispora DSM 43833]
gi|296091275|gb|ADG87227.1| two component transcriptional regulator, winged helix family
[Thermobispora bispora DSM 43833]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV +G A + E L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAASGPEALEVFDREGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRSLRQR-SKVPVIMLTAKDSEIDKIVGLELGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|282866555|ref|ZP_06275598.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282558602|gb|EFB64161.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ EDD +R L AL AGY V +G A + L++ D+++P+ DG
Sbjct: 8 HTVLVVEDDPSIRTLLTSALHAAGYRVAPAADGREALAETDRCRPDLIVLDVMLPDTDGF 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + ++KPFH+++++ V +L
Sbjct: 68 AVTRELRARGVYTPVLFLTARTEVEDRIIGLSSGGDDYVTKPFHIQEILLRVRAILRR 125
>gi|302523119|ref|ZP_07275461.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|318057260|ref|ZP_07975983.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|318076712|ref|ZP_07984044.1| two-component system response regulator [Streptomyces sp. SA3_actF]
gi|302432014|gb|EFL03830.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 247
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ EDD +R L ALG AGY V S ++G +A + L++ D+++P+ DG
Sbjct: 11 HTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLPDTDGF 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+F+T A V + ++KPFH+++++ V +L
Sbjct: 71 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 128
>gi|225181176|ref|ZP_03734622.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225168145|gb|EEG76950.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 232
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ +D+ + L L + GY VV +G A ++ E L+L DI++P+ DG
Sbjct: 3 SKKILVVDDEKPIAEILRYNLVQEGYAVVVAYDGEEATRLMQTESPDLVLLDIMLPKKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T ++KPF R+++ V L
Sbjct: 63 FAVCRDIRRV-SNVPIIMLTAKDTELDTVLGLELGADDYVTKPFSAREVLARVKAQLRR 120
>gi|72383034|ref|YP_292389.1| two component transcriptional regulator [Prochlorococcus marinus
str. NATL2A]
gi|72002884|gb|AAZ58686.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. NATL2A]
Length = 246
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + + L+ L AGY+V+S +G A + +E L++ D+++P+MDG +
Sbjct: 4 ILVVDDEPAVLKVLVTRLNLAGYKVLSAQDGEQALEVFHKEAPDLVVLDVMLPKMDGFAV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++F+T A++ L+KPF ++L + +L
Sbjct: 64 CRRIRAE-SCVPIIFLTALEAISERVAGLDLGADDYLAKPFSPKELEARIATILRR 118
>gi|46014956|pdb|1NXT|A Chain A, Micarec Ph 4.0
gi|116666721|pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEVV+ NG A ++ E +++ +++PE+DG+
Sbjct: 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILXLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ + + ++ ++ + ++KPF R+L V LL
Sbjct: 62 EVAKTIRK-TSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118
>gi|322418727|ref|YP_004197950.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320125114|gb|ADW12674.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 258
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
ILL ED+ + R + L + GY + +G A +KVR E F L++ D+++P + G
Sbjct: 5 KPHILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVRMEKFDLIILDVMLPGIGG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ LD + V+ +T +A + A L KPF+L++ + V+ +L
Sbjct: 65 FEVCQKIRALDSRVPVLMLTARSAESDRISGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123
>gi|119025586|ref|YP_909431.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
gi|154487046|ref|ZP_02028453.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
L2-32]
gi|118765170|dbj|BAF39349.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
gi|154084909|gb|EDN83954.1| hypothetical protein BIFADO_00884 [Bifidobacterium adolescentis
L2-32]
Length = 243
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIERLQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+++T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|315644229|ref|ZP_07897399.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315280604|gb|EFU43893.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD +R L L GY V + +G A ++ EE L + D++MP MDG +
Sbjct: 3 HILIADDDAHIRELLQYHLQSEGYTVFTAADGKEASARLAEEQIHLAVVDVMMPNMDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D V+ +T + A L+KPF ++L+ + LL
Sbjct: 63 LCEEIR-RYYDFPVILLTAKDQLVDKEKGFAVGTDDYLTKPFEPKELLFRIKALLRR 118
>gi|312622039|ref|YP_004023652.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202506|gb|ADQ45833.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + + +D+ D+ + + L + GY V + NG S + + +++ DI++P++
Sbjct: 1 MSAYTVYIVDDEKDILELVSEYLTQKGYSVKTFENGESFLKEFEKSEPDIVILDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ +R + + ++ ++ ++ + + KPF L +L + ++L
Sbjct: 61 DGYEICKRIRK-NSEVPIIMLSAKGEELDKVLGLELGSDDYIPKPFSLSELEARIKKILR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|291562930|emb|CBL41746.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 236
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD+++ + L K Y+ +G SA +V +L+L D+++P MDG
Sbjct: 4 KQRILIVDDDENIAELISLYLMKECYDTKIVGDGESALKEVPVFKPNLILLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIR-TTSQVPIIMLSAKGEVFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|291457450|ref|ZP_06596840.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
20213]
gi|291381285|gb|EFE88803.1| DNA-binding response regulator PhoP [Bifidobacterium breve DSM
20213]
Length = 243
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 59/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++P++DG +
Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVMLPDIDGFTV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + D V+F+T ++KPF L ++V + +L
Sbjct: 69 TRRIRQEGIDAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124
>gi|197117730|ref|YP_002138157.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197087090|gb|ACH38361.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 60/116 (51%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ + R + L + GY V +G A +KV+ E F L++ D+++P + G E+
Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLVSHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R LD + V+ +T +A + A L KPF+L++ + V+ +L
Sbjct: 68 CERIRTLDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123
>gi|170782838|ref|YP_001711172.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157408|emb|CAQ02597.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
Length = 252
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
EDD + + + L +G++V + +G A E L++ D ++P +DG+E+ RR
Sbjct: 2 VEDDPTVNEVVCRYLKASGFQVETVADGLEAVRVATERMPDLVVLDRMLPGLDGLEVCRR 61
Query: 68 ATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
P+ + V+ +T + L+KPF R+LV V +L
Sbjct: 62 IRAHHPESPVPVVMLTALGQGEDRVNGLDAGADDYLAKPFSPRELVLRVRAVLRR 116
>gi|30262552|ref|NP_844929.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47527850|ref|YP_019199.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49185393|ref|YP_028645.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49479219|ref|YP_036667.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|165869212|ref|ZP_02213872.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167632497|ref|ZP_02390824.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167637603|ref|ZP_02395882.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170685561|ref|ZP_02876785.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170704849|ref|ZP_02895315.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177649426|ref|ZP_02932428.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|196036697|ref|ZP_03104089.1| DNA-binding response regulator [Bacillus cereus W]
gi|196040320|ref|ZP_03107621.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196043173|ref|ZP_03110411.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|218903690|ref|YP_002451524.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|225864541|ref|YP_002749919.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227814629|ref|YP_002814638.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228915145|ref|ZP_04078742.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228933850|ref|ZP_04096695.1| Sensor histidine kinase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228946198|ref|ZP_04108531.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229091551|ref|ZP_04222759.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
gi|229122099|ref|ZP_04251315.1| Sensor histidine kinase [Bacillus cereus 95/8201]
gi|229184788|ref|ZP_04311981.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
gi|229602327|ref|YP_002866875.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254685128|ref|ZP_05148988.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254722537|ref|ZP_05184325.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254737579|ref|ZP_05195282.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254743238|ref|ZP_05200923.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254751894|ref|ZP_05203931.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254760414|ref|ZP_05212438.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30257184|gb|AAP26415.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47502998|gb|AAT31674.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179320|gb|AAT54696.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|49330775|gb|AAT61421.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|164715938|gb|EDR21455.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167514152|gb|EDR89519.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167532795|gb|EDR95431.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170130650|gb|EDS99511.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170670921|gb|EDT21660.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172084500|gb|EDT69558.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|195990661|gb|EDX54637.1| DNA-binding response regulator [Bacillus cereus W]
gi|196025482|gb|EDX64151.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196028805|gb|EDX67411.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218535416|gb|ACK87814.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|225786925|gb|ACO27142.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227007355|gb|ACP17098.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228598692|gb|EEK56319.1| Sensor histidine kinase [Bacillus cereus BGSC 6E1]
gi|228661442|gb|EEL17066.1| Sensor histidine kinase [Bacillus cereus 95/8201]
gi|228691775|gb|EEL45524.1| Sensor histidine kinase [Bacillus cereus Rock3-42]
gi|228813489|gb|EEM59777.1| Sensor histidine kinase [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228825806|gb|EEM71594.1| Sensor histidine kinase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228844574|gb|EEM89628.1| Sensor histidine kinase [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229266735|gb|ACQ48372.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|329928077|ref|ZP_08282039.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
HGF5]
gi|328938068|gb|EGG34466.1| putative transcriptional regulatory protein OmpR [Paenibacillus sp.
HGF5]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MNQ I + +DD +R + L K GY V +D R P + + DI++P
Sbjct: 1 MNQTYLIAVVDDDLHIRNLVEAYLRKEGYRTVGLGTAEEGWDMWRTNPPDMWVLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG EL RR ++ ++ I+ + + + KPF R+LV + R L
Sbjct: 61 MDGFELCRRIRAE-AEVPIIMISAKDSEVDKILGLELGSDDYMVKPFSPRELVARIKRQL 119
Query: 119 TI 120
+
Sbjct: 120 SR 121
>gi|242240331|ref|YP_002988512.1| two component transcriptional regulator PhoB, winged helix family
[Dickeya dadantii Ech703]
gi|242132388|gb|ACS86690.1| two component transcriptional regulator PhoB, winged helix family
[Dickeya dadantii Ech703]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + A ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQPVEAEDYDVAVSRLAEPYPELVLLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + L D+ VM +T ++KPF ++LV + ++
Sbjct: 61 GLQFIKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|225174725|ref|ZP_03728723.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225169852|gb|EEG78648.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 236
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD + + + G+EV+ ++G E +++ DI++P DG+
Sbjct: 6 KVLVVDDDHIVLELVKLYGEREGFEVIVVSDGDQVLPIYDRENPDVVILDIMLPGKDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E+ + ++ +T A +SKPF R+LV + +L
Sbjct: 66 LCRSLREIRM-IPIIMLTAKGEEADRVLGLEMGADDYISKPFSPRELVARIKAVLRR 121
>gi|254482005|ref|ZP_05095247.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
gi|214037695|gb|EEB78360.1| response regulator receiver domain protein [marine gamma
proteobacterium HTCC2148]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD ++ L + L G+EV S ++GA A ++++ + L+ DI++P M
Sbjct: 1 MKDHVLIIDDDKELCALLAQYLELQGFEVSSIHDGAEAVTHLQQQEYDTLVLDIMLPGMM 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + D V+ +T L KP + R+L + +L
Sbjct: 61 GLDVLRKIRDFT-DTPVLMLTARGEDTDRIVGLEMGADDYLPKPCNPRELAARLRAILRR 119
>gi|220927161|ref|YP_002502463.1| two component transcriptional regulator PhoB, winged helix family
[Methylobacterium nodulans ORS 2060]
gi|219951768|gb|ACL62160.1| two component transcriptional regulator PhoB, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L G+EV + G A ++RE+ L+L D ++P +
Sbjct: 1 MSTRILIVEDEEPLTLLLRYNLEAEGFEVDAVARGDEADIRLREQIPDLVLLDWMVPGLS 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T A + KPF + +L+ V LL
Sbjct: 61 GIELCRRIRARRETERLPIIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|89896369|ref|YP_519856.1| hypothetical protein DSY3623 [Desulfitobacterium hafniense Y51]
gi|219667803|ref|YP_002458238.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89335817|dbj|BAE85412.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538063|gb|ACL19802.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 230
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + + L G+ S +G A K E L++ D++MP++ G+E
Sbjct: 6 HILICDDQLIIHETIAAYLKAEGFTYGSAYDGEEALQKAYETAPDLIILDLMMPKLSGME 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D+ ++ +T + KPF R++V V +L K
Sbjct: 66 VCRTLRKTT-DVPIIMLTAKGEEIDKILGLELGADDYIVKPFSPREVVARVKTVLRRK 122
>gi|332533238|ref|ZP_08409105.1| Two-component system response regulator OmpR [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037317|gb|EGI73772.1| Two-component system response regulator OmpR [Pseudoalteromonas
haloplanktis ANT/505]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+ V + N + E F L++ D+++P DG+
Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ ++ +T + KPF+ R+L+ + +L +
Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRR 124
>gi|330447153|ref|ZP_08310803.1| osmolarity response regulator [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491344|dbj|GAA05300.1| osmolarity response regulator [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKVLVVDDDMRLRALLERYLSEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|229030240|ref|ZP_04186297.1| Sensor histidine kinase [Bacillus cereus AH1271]
gi|228731084|gb|EEL82009.1| Sensor histidine kinase [Bacillus cereus AH1271]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMVLDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|226312547|ref|YP_002772441.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226095495|dbj|BAH43937.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 224
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED +R + + L GYEV+ +G+ A +E L++ D+++PE+D
Sbjct: 1 MAKTILIVEDQQVLREIMKEYLMDEGYEVLEAGDGSQALTLFQEHEVHLIILDVMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR ++ ++ ++ +T + + KP L+ RLL
Sbjct: 61 GWSVCRRIRKV-SNVPILMLTARSDEDDTLLGFELGADDYVVKPCSPPILLARSKRLLEN 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|218897513|ref|YP_002445924.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228901111|ref|ZP_04065315.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
gi|218541801|gb|ACK94195.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228858517|gb|EEN02973.1| Sensor histidine kinase [Bacillus thuringiensis IBL 4222]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A KV L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|323485119|ref|ZP_08090471.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
WAL-14163]
gi|323694012|ref|ZP_08108196.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323401549|gb|EGA93895.1| hypothetical protein HMPREF9474_02222 [Clostridium symbiosum
WAL-14163]
gi|323501948|gb|EGB17826.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 237
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD ++ + L K +E +G A +L+L D+++P +DG
Sbjct: 4 KQRILIVDDDYNIAELISLYLTKECFETRIVGDGEEALKLFPVFEPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCRELRA-SSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|309790846|ref|ZP_07685390.1| response regulator receiver [Oscillochloris trichoides DG6]
gi|308227133|gb|EFO80817.1| response regulator receiver [Oscillochloris trichoides DG6]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ ED+ ++ +L + L G++V ++G + RE L++ D+++P +D
Sbjct: 1 MQQRILIIEDELEIANYLRRGLILEGFQVSVAHDGPQGLEFAREAAHDLVVLDLMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR D+ ++ +T +V L KPF +L+ + L
Sbjct: 61 GIEVARRLRAA-SDVPIIILTARDSVPDRVTGLEAGADDYLVKPFAFAELLARIRVQLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|302870950|ref|YP_003839586.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302573809|gb|ADL41600.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 217
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R+ + L K G+EV ++G A +K + +S+++ D+++P+ DG
Sbjct: 2 KILLIEDEEKLRKIMKLYLEKEGFEVEEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D D V+ +T + KP +++V V +L
Sbjct: 62 VLREIRKKD-DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117
>gi|190573011|ref|YP_001970856.1| putative phosphate regulon two-component response regulator
transcriptional regulator [Stenotrophomonas maltophilia
K279a]
gi|254521224|ref|ZP_05133279.1| phosphate regulon transcriptional regulatory protein PhoB
[Stenotrophomonas sp. SKA14]
gi|190010933|emb|CAQ44542.1| putative phosphate regulon two-component response regulator
transcriptional regulatory protein [Stenotrophomonas
maltophilia K279a]
gi|219718815|gb|EED37340.1| phosphate regulon transcriptional regulatory protein PhoB
[Stenotrophomonas sp. SKA14]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K YE V + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIREMVAFALRKGDYEPVHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR + L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKETLTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|147678005|ref|YP_001212220.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146274102|dbj|BAF59851.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 233
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ ++ L L K G++V+S NG A RE+ L++ D+++PEMDG ++
Sbjct: 4 ILAVDDEANILELLKFNLSKEGFQVISATNGPDAVKIAREKKPDLIILDVMLPEMDGYDV 63
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ V+ ++ ++KPF R++V V L K+
Sbjct: 64 LQKLKADRETAVTPVIILSAKTEEVDKVLGLELGADDYITKPFSPREVVARVKARLRRKS 123
>gi|145294917|ref|YP_001137738.1| hypothetical protein cgR_0863 [Corynebacterium glutamicum R]
gi|140844837|dbj|BAF53836.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 226
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+
Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ R + + ++ +T ++KPF ++LV + L
Sbjct: 61 GIDICRLIRQE-SSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118
>gi|254974102|ref|ZP_05270574.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255091501|ref|ZP_05320979.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255313229|ref|ZP_05354812.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255515919|ref|ZP_05383595.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255649013|ref|ZP_05395915.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260682204|ref|YP_003213489.1| two-component response regulator [Clostridium difficile CD196]
gi|260685803|ref|YP_003216936.1| two-component response regulator [Clostridium difficile R20291]
gi|306519129|ref|ZP_07405476.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|260208367|emb|CBA60866.1| two-component response regulator [Clostridium difficile CD196]
gi|260211819|emb|CBE02210.1| two-component response regulator [Clostridium difficile R20291]
Length = 224
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D++ + L GYEV + +G + K+ + ++L DI MPE+D
Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNGYEVYTAQSGKDSLKKISKN-PDIILLDINMPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++F+T + + KPF L +L V+ L
Sbjct: 60 GIEVCNRIRD-YVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|59710721|ref|YP_203497.1| osmolarity response regulator [Vibrio fischeri ES114]
gi|59478822|gb|AAW84609.1| OmpR DNA-binding osmolarity response regulator in two-component
regulatory system with EnvZ [Vibrio fischeri ES114]
Length = 239
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|6862582|gb|AAD30120.2| DNA binding response regulator RpaA [Tolypothrix sp. PCC 7601]
Length = 247
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ V+ +T + + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTAEIPVLMLTALSQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|324326529|gb|ADY21789.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|310814679|ref|YP_003962643.1| phosphate regulon transcriptional regulatory protein PhoB
[Ketogulonicigenium vulgare Y25]
gi|308753414|gb|ADO41343.1| phosphate regulon transcriptional regulatory protein PhoB
[Ketogulonicigenium vulgare Y25]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ R L GY V + NG SA ++ EEP L++ D ++P + GIE
Sbjct: 7 HILVIEDEPAQREVLAYNFEAEGYRVSTAPNGDSALLQLAEEPPDLIVLDWMLPGVSGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ ++ + ++KP+ + +L+ L
Sbjct: 67 ICRQIKARAETRAIPVIMLSARSEEGDKVRGLETGADDYVTKPYSITELLARARAQLRR 125
>gi|257062967|ref|YP_003142639.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
gi|256790620|gb|ACV21290.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ + F+ L KAGY+V + NG A R + + L + DI+MP M+G E
Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+F++ + L+KPF +R+L+ V LL
Sbjct: 67 LCRNLRTRT-NAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR 122
>gi|157273493|gb|ABV27392.1| transcriptional regulatory protein [Candidatus Chloracidobacterium
thermophilum]
Length = 242
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + I++ EDD D+ + + L + G + V G + V E P +L+L DI +P M
Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G E+ RR E + ++ +T ++KPF +R+L+ +N +
Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|42781625|ref|NP_978872.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42737548|gb|AAS41480.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|47570221|ref|ZP_00240874.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|52142938|ref|YP_083891.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|228985668|ref|ZP_04145821.1| Sensor histidine kinase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229156150|ref|ZP_04284248.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
gi|229196733|ref|ZP_04323476.1| Sensor histidine kinase [Bacillus cereus m1293]
gi|301054096|ref|YP_003792307.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|47553127|gb|EAL11525.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|51976407|gb|AAU17957.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|228586808|gb|EEK44883.1| Sensor histidine kinase [Bacillus cereus m1293]
gi|228627333|gb|EEK84062.1| Sensor histidine kinase [Bacillus cereus ATCC 4342]
gi|228774063|gb|EEM22476.1| Sensor histidine kinase [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|300376265|gb|ADK05169.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|23464633|ref|NP_695236.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
gi|46190381|ref|ZP_00206445.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Bifidobacterium longum DJO10A]
gi|189438868|ref|YP_001953949.1| response regulator [Bifidobacterium longum DJO10A]
gi|227546731|ref|ZP_03976780.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239620707|ref|ZP_04663738.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|312132322|ref|YP_003999661.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
gi|317481711|ref|ZP_07940743.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|322689673|ref|YP_004209407.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
gi|322691634|ref|YP_004221204.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|23325190|gb|AAN23872.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
gi|189427303|gb|ACD97451.1| Response regulator [Bifidobacterium longum DJO10A]
gi|227212693|gb|EEI80574.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239516283|gb|EEQ56150.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291516232|emb|CBK69848.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Bifidobacterium longum
subsp. longum F8]
gi|311773616|gb|ADQ03104.1| Response regulator [Bifidobacterium longum subsp. longum BBMN68]
gi|316916825|gb|EFV38215.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|320456490|dbj|BAJ67112.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320461009|dbj|BAJ71629.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
Length = 243
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGINAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|291006081|ref|ZP_06564054.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
Length = 237
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R + + L +AGY V +G +A E L++ D+++P + G+E
Sbjct: 13 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E ++ V+ +T + + KPF R+LV V +L
Sbjct: 73 VCRRLRERG-EVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRR 128
>gi|160946255|ref|ZP_02093466.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
gi|158447778|gb|EDP24773.1| hypothetical protein PEPMIC_00217 [Parvimonas micra ATCC 33270]
Length = 226
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ L L Y V +G A + E + ++ DI+MP++DGI
Sbjct: 2 RILICEDEIDLADGLCTILKGNKYSVDVVYDGEEALTYLEAENYDAVVLDIMMPKVDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + V+ +T + + L+KPF +++L+ + + K
Sbjct: 62 VLKTIRENGNSIPVIMLTAKSELEDKVIGLDCGADDYLTKPFEVKELLARLRAITRRK 119
>gi|75674709|ref|YP_317130.1| phosphate regulon transcriptional regulatory protein phoB
[Nitrobacter winogradskyi Nb-255]
gi|74419579|gb|ABA03778.1| two component transcriptional regulator, winged helix family
[Nitrobacter winogradskyi Nb-255]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GYEV + G A +++E L++ D ++P +
Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAEGYEVETVVRGDEADTRLKERVPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARSDTRQLPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|308126687|ref|ZP_05911833.2| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
gi|308106582|gb|EFO44122.1| response regulator receiver domain protein [Vibrio parahaemolyticus
AQ4037]
Length = 1111
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G V +E LLL DI+MP M G ++
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 823
>gi|308094713|ref|ZP_05891407.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
AN-5034]
gi|308095255|ref|ZP_05904423.2| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
Peru-466]
gi|308125416|ref|ZP_05775166.2| response regulator receiver domain protein [Vibrio parahaemolyticus
K5030]
gi|308085373|gb|EFO35068.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
Peru-466]
gi|308089610|gb|EFO39305.1| chitin sensor histidine kinase ChiS [Vibrio parahaemolyticus
AN-5034]
gi|308111067|gb|EFO48607.1| response regulator receiver domain protein [Vibrio parahaemolyticus
K5030]
Length = 1111
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G V +E LLL DI+MP M G ++
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 823
>gi|258651192|ref|YP_003200348.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258554417|gb|ACV77359.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 252
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+++ ED+ + + + L AG+ V C G VR + + ++ DI +P+MDG++L
Sbjct: 18 VVVVEDESVIADVIRRYLTAAGFGVRWCRTGQEGLAAVRTDRPTAVVLDIGLPDMDGLDL 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E V+F+T L KPF+ R+LV + +L
Sbjct: 78 CRRLREAGDWTPVLFVTARDEDVDRILGLELGGDDYLVKPFNPRELVARLRAVLRR 133
>gi|167760789|ref|ZP_02432916.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
gi|167661676|gb|EDS05806.1| hypothetical protein CLOSCI_03174 [Clostridium scindens ATCC 35704]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A SL+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYHPSLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121
>gi|292486595|ref|YP_003529463.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Erwinia amylovora CFBP1430]
gi|292897832|ref|YP_003537201.1| two-component response regulator [Erwinia amylovora ATCC 49946]
gi|291197680|emb|CBJ44775.1| two-component response regulator [Erwinia amylovora ATCC 49946]
gi|291552010|emb|CBA19047.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Erwinia amylovora CFBP1430]
gi|312170655|emb|CBX78918.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Erwinia amylovora ATCC BAA-2158]
Length = 233
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ V+ +G A + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GLDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|229160972|ref|ZP_04288961.1| DNA-binding response regulator [Bacillus cereus R309803]
gi|228622540|gb|EEK79377.1| DNA-binding response regulator [Bacillus cereus R309803]
Length = 228
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALRKIDEVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|229816849|ref|ZP_04447131.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
20098]
gi|229785865|gb|EEP21979.1| hypothetical protein BIFANG_02097 [Bifidobacterium angulatum DSM
20098]
Length = 262
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L A +EV + +G+ A + + + L++ D+++
Sbjct: 20 MSKPTEASIVVVDDEPSIRELLVASLHFANFEVSTAASGSEAIEVIEKVQPDLIVLDVML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + + V+F+T ++KPF L ++V +
Sbjct: 80 PDIDGFTVTRRIRQEGINAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 139
Query: 117 LLTI 120
+L
Sbjct: 140 ILRR 143
>gi|224541337|ref|ZP_03681876.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
15897]
gi|224525774|gb|EEF94879.1| hypothetical protein CATMIT_00497 [Catenibacterium mitsuokai DSM
15897]
Length = 234
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL ED+ +R + L YEV+ NG + ++ L + DI+MP MD
Sbjct: 1 MKHTLLLVEDELGIRETVKIFLKSQNYEVIEAENGKEGLEALKHNDIHLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + E+ D+ V+F+T ++KPF +L+ VN L
Sbjct: 61 GLTMTMKLREV-SDIPVIFLTAKTEDIDKITGLNLGADDYITKPFEPMELIARVNSNLRR 119
>gi|167462051|ref|ZP_02327140.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus larvae subsp. larvae BRL-230010]
gi|322381463|ref|ZP_08055454.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
gi|321154570|gb|EFX46853.1| two-component response regulator-like protein [Paenibacillus larvae
subsp. larvae B-3650]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+A+DD + + L K G++V+ +G A + +E L + D++MP D
Sbjct: 1 MN--ILIADDDIHIYELIRYYLQKEGFKVLEAKDGEEASALLEQETVDLAIVDVMMPNKD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R D+ V+ +T + L KPF ++LV + LL
Sbjct: 59 GYELCREIR-RYYDIPVIMLTAKGEIPDKEKGYQAGTDDYLVKPFEPKELVFRIKALLRR 117
>gi|22299208|ref|NP_682455.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22295390|dbj|BAC09217.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 288
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D + L L GY+V +G A + EP ++L DI+MP+MDG E
Sbjct: 12 RILIVDDTPENVEVLTTLLQLEGYDVRGAISGQMALMGIEAEPPDVILLDIMMPDMDGYE 71
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + + ++FI+ V + A ++KPF +++ V LTI
Sbjct: 72 LCQTLKQNPKTKHIPIIFISALDDVFDKVKAFEIGGADYITKPFQQAEVLARVKNQLTI 130
>gi|319653853|ref|ZP_08007947.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
gi|317394389|gb|EFV75133.1| DNA-binding response regulator [Bacillus sp. 2_A_57_CT2]
Length = 227
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L GY + +G A K+ ++P L++ DI+MP+MD
Sbjct: 1 MT-RILIVDDDRQIADLIEVYLKNDGYIIDKAGDGMEALKKLEQDPPDLIVLDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E + + + + ++ ++ A + KPF+ +L V LL
Sbjct: 60 GLEFCKYVRKNN-QVPILMVSAKAEDMDKIMGLMTGADDYMIKPFNPLELAARVKALLRR 118
Query: 121 KN 122
N
Sbjct: 119 AN 120
>gi|326202731|ref|ZP_08192599.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987315|gb|EGD48143.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 231
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61
+++L+ ED++D+R F++ L + G+EVV +G A ++ E ++L DI++P +DG
Sbjct: 2 KRVLIVEDEEDIREFIVINLKRTGFEVVEAESGEEALAIIQNEKNLDIMLLDIMLPGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ E + + V+ +T + + + KPF +L+ ++ +L
Sbjct: 62 YKVLKKTRENNSSIGVIMLTAKSQEIDKVTGLSYGADDYIVKPFSPIELIARIDAILRR 120
>gi|225388781|ref|ZP_03758505.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
DSM 15981]
gi|225045163|gb|EEG55409.1| hypothetical protein CLOSTASPAR_02517 [Clostridium asparagiforme
DSM 15981]
Length = 225
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G++V+ +G A D ++ +L+L D++MP+MDG
Sbjct: 5 KILVVDDEARMRKLVKDFLTNKGFQVIEAGDGEEAVDIFFADKDIALVLLDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + + V+ +T + + + +SKPF + LV V+ +L N
Sbjct: 65 EVLKTIRK-YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123
>gi|114778428|ref|ZP_01453273.1| response regulator receiver domain protein (CheY-like)
[Mariprofundus ferrooxydans PV-1]
gi|114551272|gb|EAU53830.1| response regulator receiver domain protein (CheY-like)
[Mariprofundus ferrooxydans PV-1]
Length = 227
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + F+ K L + G+ V +G + L++ D+++P+ +G+
Sbjct: 2 KILVVEDEERVAHFIQKGLKEEGHAVDISYDGEDGEFLAEVNDYDLIILDLMLPKKNGLV 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R V+ +T +V L+KPF +L+ V LL K+
Sbjct: 62 VCRELRASGVSTPVLMLTARDSVEDKVRGLDAGADDYLAKPFAFEELLARVRALLRRKS 120
>gi|19551981|ref|NP_599983.1| two-component system response regulator [Corynebacterium glutamicum
ATCC 13032]
gi|62389642|ref|YP_225044.1| response regulator [Corynebacterium glutamicum ATCC 13032]
gi|21323520|dbj|BAB98147.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
gi|41324977|emb|CAF19458.1| Response regulator [Corynebacterium glutamicum ATCC 13032]
Length = 226
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +DD + L L G++ V+ +GA A + E L+L D+++P M+
Sbjct: 1 MSQKILVVDDDPAISEMLTIVLSAEGFDTVAVTDGALAVETASREQPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ R + + ++ +T ++KPF ++LV + L
Sbjct: 61 GIDICRLIRQE-SSVPIIMLTAKTDTVDVVLGLESGADDYVNKPFKAKELVARIRARLR 118
>gi|85711170|ref|ZP_01042230.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
baltica OS145]
gi|85695083|gb|EAQ33021.1| Positive response regulator for pho regulon (CheY-wHTH) [Idiomarina
baltica OS145]
Length = 228
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L + + GY+ V + S K+ E ++L D ++P
Sbjct: 1 MPRRILIVEDEAPIREMLSFVMEQHGYQAVEAKDYDSGLAKIAEPYPDMVLLDWMLPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+LA++ D ++ ++ +T ++KPF ++L+ + +
Sbjct: 61 GIQLAKKIKSDDFTRNIPIIMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARMRAVF 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|324112763|gb|EGC06739.1| sigma-54 interaction domain-containing protein [Escherichia
fergusonii B253]
gi|325496734|gb|EGC94593.1| acetoacetate metabolism regulator (two-component system response
regulator) [Escherichia fergusonii ECD227]
Length = 461
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +IL+ +D++++RR L A GY+ NG A ++L DI MPE
Sbjct: 1 MNAVYRILIVDDEENVRRMLSTAFSLQGYDTHCACNGNEALPLFTRVQPDVVLMDIRMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGI + +P ++ +T +A V ++ + KPF L +L V R L
Sbjct: 61 MDGISALKAMRGHNPRTPIVLMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLVVQRAL 120
Query: 119 TIKN 122
+++
Sbjct: 121 QLQS 124
>gi|319946568|ref|ZP_08020802.1| DNA-binding response regulator [Streptococcus australis ATCC
700641]
gi|319746616|gb|EFV98875.1| DNA-binding response regulator [Streptococcus australis ATCC
700641]
Length = 233
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + + K GYEV++ +G A E +L+ D+++PE+DG+
Sbjct: 2 KKILVVDDEKPISDIIKFNMAKEGYEVLTAFDGKEALAVFEAESPDILILDLMLPEIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR + ++ ++ ++ ++KPF R+L V LL
Sbjct: 62 EVARTIRK-TSNVPIIVLSAKDTEFDKVIGLEIGADDYVTKPFSNRELQARVKALLRR 118
>gi|269140794|ref|YP_003297495.1| response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Edwardsiella tarda
EIB202]
gi|267986455|gb|ACY86284.1| response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Edwardsiella tarda
EIB202]
gi|304560554|gb|ADM43218.1| Copper-sensing two-component system response regulator CpxR
[Edwardsiella tarda FL6-60]
Length = 232
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EV+ ++G A + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|78357430|ref|YP_388879.1| two component transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219835|gb|ABB39184.1| two component transcriptional regulator, winged helix family
[Desulfovibrio desulfuricans subsp. desulfuricans str.
G20]
Length = 229
Score = 150 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++L+ EDD D+ + L L AG+EV S +G + + E L++ D+++P M
Sbjct: 1 MAKDRLLVVEDDGDILQLLTFTLESAGFEVFSAMDGKTGLELAMREKPDLVVLDLMLPGM 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+++ + + + V+ +T + KPF R+LV + +
Sbjct: 61 SGLDVCKDLKRMPETQETPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|320160702|ref|YP_004173926.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
gi|319994555|dbj|BAJ63326.1| response regulator receiver protein [Anaerolinea thermophila UNI-1]
Length = 381
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD R + L + GY++++ +NG A R E L+L D++MP++D
Sbjct: 1 MAEKILIVDDDVQTLRLVGLMLERQGYKILAASNGTQAISMARTERPDLILLDVMMPDVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +AR + D+ ++ T A V L+KP H +L + +L
Sbjct: 61 GFSVARTLRKEPETADIPILMFTAKAQVEDKIAGYEAGADDYLTKPIHPAELTAHMRAIL 120
Query: 119 TI 120
+
Sbjct: 121 SR 122
>gi|255281904|ref|ZP_05346459.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
14469]
gi|255267577|gb|EET60782.1| DNA-binding response regulator VicR [Bryantella formatexigens DSM
14469]
Length = 224
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD R L L +AGY V + +NG +A D + +E L++ DI+MP+MDG E
Sbjct: 3 HILVVDDDKHTRMLLQAILEEAGYTVTTADNGETALDVLDKEHIDLVVLDIMMPKMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + L ++ +T A ++KP ++ + LL
Sbjct: 63 FTKTIRETNDALPILMVTAKQDAADEKQGFLVGTDDYITKPIDEEKMLLRIKALLRR 119
>gi|218262520|ref|ZP_03476947.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
DSM 18315]
gi|218223331|gb|EEC95981.1| hypothetical protein PRABACTJOHN_02625 [Parabacteroides johnsonii
DSM 18315]
Length = 963
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q ILLA+D+ ++ ++L + L Y VV NG A + E ++++D++MPEM+G
Sbjct: 711 KQTILLADDNQEVLQYLEQQL-CLDYVVVKAFNGKEALAMIEESYPHIVISDVMMPEMNG 769
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL +R E + V+ +T + ++ + + KPF + L + +L+
Sbjct: 770 LELCKRIKENQNYCHIPVILLTAKSMISQIEEGLDAGADDYIVKPFQISLLKARIRNILS 829
Query: 120 IK 121
++
Sbjct: 830 LR 831
>gi|330976281|gb|EGH76342.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P
Sbjct: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHPIIVDRKPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR EL D+ ++ +T ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|300932509|ref|ZP_07147765.1| two-component system response regulator [Corynebacterium resistens
DSM 45100]
Length = 235
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +D+ ++ L +L G++V + ++G +A D V E + D++MP MDG
Sbjct: 8 STKVLVVDDEANISDLLKVSLKFQGFDVETADSGQAALDIVDEYQPDAFILDVMMPGMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+F+T V ++KPF L +++ + +L
Sbjct: 68 FSLLNKLRAKGHDAPVLFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|290473269|ref|YP_003466135.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Xenorhabdus bovienii SS-2004]
gi|289172568|emb|CBJ79337.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Xenorhabdus bovienii SS-2004]
Length = 239
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +DD +R L + L + G++V S N + E L++ D+++P DG
Sbjct: 4 SYKILVVDDDMRLRALLERYLSEQGFQVRSVANAEQMDRLLTRESIQLIILDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ ++ L KPF+ R+L+ + ++ +
Sbjct: 64 LSICRRLRSQHNPIPIIMVSAKGEEVDRIVGLEIGADDYLVKPFNPRELLARMRAVMRRQ 123
Query: 122 N 122
+
Sbjct: 124 S 124
>gi|258652754|ref|YP_003201910.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258555979|gb|ACV78921.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ +R L L G+EVV +G +A D VR +P L+L D+++P +DG+
Sbjct: 2 RKVLVVDDEPHIRTVLRGYLEADGFEVVDAADGETAVDLVRRDPPDLVLLDVMLPGIDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + D V+ +T A A ++KPF R++ V +L
Sbjct: 62 EVLRRLRAV-SDAYVILVTARAEEVDKLVGLAVGADDYVTKPFSPREVTARVKAVLRR 118
>gi|171743333|ref|ZP_02919140.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
27678]
gi|171278947|gb|EDT46608.1| hypothetical protein BIFDEN_02464 [Bifidobacterium dentium ATCC
27678]
Length = 243
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+++T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|311064059|ref|YP_003970784.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
gi|310866378|gb|ADP35747.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
Length = 245
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ +R L+ +L AG++V + +G+ A + + + L++ D+++P++DG +
Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+F+T ++KPF L ++V + +L
Sbjct: 69 TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124
>gi|238754750|ref|ZP_04616102.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
ATCC 29473]
gi|238707058|gb|EEP99423.1| Transcriptional regulator in 2-component system [Yersinia ruckeri
ATCC 29473]
Length = 232
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ +V +G A + + + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNIVVAYDGEQALNLL-DNSIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|254387605|ref|ZP_05002844.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294815008|ref|ZP_06773651.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326443376|ref|ZP_08218110.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|176045579|gb|ACB72855.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|197701331|gb|EDY47143.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294327607|gb|EFG09250.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 270
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +G++A RE ++ D+++P+MDG+
Sbjct: 44 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 104 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRR 160
>gi|170744715|ref|YP_001773370.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
gi|168198989|gb|ACA20936.1| two component transcriptional regulator, winged helix family
[Methylobacterium sp. 4-46]
Length = 234
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L G+ V + G A ++RE+ L+L D ++P +
Sbjct: 1 MSTRILIVEDEEPLTLLLRYNLEAEGFTVDAVARGDEADIRLREQVPDLVLLDWMVPGLS 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L V+ +T A + KPF + +L+ V LL
Sbjct: 61 GIELCRRIRARRETERLPVIMLTARGEEGDRVRGLATGADDYIVKPFSVPELLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|119471397|ref|ZP_01613869.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
gi|119445673|gb|EAW26957.1| osmolarity response regulator [Alteromonadales bacterium TW-7]
Length = 239
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+ V + N + E F L++ D+++P DG+
Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAANSEQMDRLLERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ ++ +T + KPF+ R+L+ + +L +
Sbjct: 67 ICRRLRQKENEIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRR 124
>gi|15895700|ref|NP_349049.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15025451|gb|AAK80389.1|AE007743_11 Response regulator (CheY-like domain and HTH-type DNA-binding
domain) [Clostridium acetobutylicum ATCC 824]
gi|325509850|gb|ADZ21486.1| Response regulator (CheY-like domain and HTH-type DNA-binding
domain) [Clostridium acetobutylicum EA 2018]
Length = 224
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D MR + L + GY V+ +G A + SL++ DI++P +D
Sbjct: 1 MSESILIVEDEDRMRELIKAYLRREGYSVLEAADGKEALEMFDRNSISLVILDIMLPLLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + E ++ ++ +T + ++KP + L +V LL
Sbjct: 61 GWTVCTNIREK-SEVPIIMLTAKSEEDDKLLGYELGADDYVTKPCSPKVLTAKVKVLLKR 119
>gi|20807256|ref|NP_622427.1| response regulator [Thermoanaerobacter tengcongensis MB4]
gi|20515763|gb|AAM24031.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Thermoanaerobacter tengcongensis
MB4]
Length = 224
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M K+L+ ED++ MR L L GY+V++ NG D E ++L DI++P++
Sbjct: 1 MMHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G L + E + VM IT + KPF R++V V +L+
Sbjct: 61 SGWSLLKTIRE-TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILS 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|259505958|ref|ZP_05748860.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
gi|259166439|gb|EEW50993.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length = 236
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G+ V++ ++G RE + D++MP MDG E
Sbjct: 10 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+++T AV ++KPF L +++ + +L
Sbjct: 70 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|229512884|ref|ZP_04402351.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae TMA 21]
gi|229350133|gb|EEO15086.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae TMA 21]
Length = 1129
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 840
>gi|226315382|ref|YP_002775278.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226098332|dbj|BAH46774.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 233
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q IL+A+D+ ++ + + K GY + +G +A V+ L + DI+MP +
Sbjct: 1 MKQVTILIADDEAEIAELVALHVKKEGYHTIIAADGKAALQAVQTHSIDLAILDIMMPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ R E ++ ++F++ + ++KPF+ +LV VN L
Sbjct: 61 DGYEVTRLIREQH-NMPIIFLSAKTSDLDKISGLVMGADDYMTKPFNPMELVARVNAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|198276756|ref|ZP_03209287.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
gi|198270281|gb|EDY94551.1| hypothetical protein BACPLE_02958 [Bacteroides plebeius DSM 17135]
Length = 231
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + L L + GY + +GA + F L+++DI++P++DG EL
Sbjct: 4 ILIIEDDKRVADLLKTGLEENGYHTMVAYDGAMGLRLFQSHSFQLVISDIILPKLDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + +P + V+ +T + D + KPF R+L + LL K
Sbjct: 64 CKEIRKANPHIPVLMLTALGSTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRK 120
>gi|15896467|ref|NP_349816.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15026293|gb|AAK81156.1|AE007818_2 Response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Clostridium acetobutylicum ATCC
824]
gi|325510625|gb|ADZ22261.1| Response regulator (CheY-like receiver domain and HTH-type
DNA-binding domain) [Clostridium acetobutylicum EA 2018]
Length = 228
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L +GY N+G SA + E ++L DI++P+ DGI+
Sbjct: 7 KVLIVDDDENICEVIKLYLESSGYATKISNDGKSAQNVFVEYKPDIVLLDIMLPQEDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + V+ +T + + KPF ++LV V +L N
Sbjct: 67 VLKWIRKAD-NTPVIMLTAKGETFDKVLTLELGADDYIVKPFEPKELVARVKAVLRRAN 124
>gi|317129751|ref|YP_004096033.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315474699|gb|ADU31302.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 236
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + + ED+ + L L K+GY V S NG K+RE ++ D+++P+M
Sbjct: 1 MAITVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMP 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ L D+ +M ++ ++ ++KPF R+++ + +L
Sbjct: 61 GEEICKQIR-LTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR 119
>gi|262172302|ref|ZP_06039980.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
mimicus MB-451]
gi|261893378|gb|EEY39364.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
mimicus MB-451]
Length = 1112
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E LLL DI+MP M G ++
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 767
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 823
>gi|241895845|ref|ZP_04783141.1| response regulator [Weissella paramesenteroides ATCC 33313]
gi|241870888|gb|EER74639.1| response regulator [Weissella paramesenteroides ATCC 33313]
Length = 234
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+V +G A D E L+L D ++PE++
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYDVAVAMDGREALDLFESEEPDLVLLDQMLPEVE 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ V+ +T + ++KPF R+L+ + L
Sbjct: 60 GTEVLRQIR-TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRR 118
Query: 121 KN 122
++
Sbjct: 119 QS 120
>gi|291294702|ref|YP_003506100.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
gi|290469661|gb|ADD27080.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
Length = 221
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD +R L L + G EV+ NG A + + +++ D+++P++ G +
Sbjct: 3 RVLLVDDDPAIREVLGVYLRQEGCEVLEATNGLEALQLLPQA--DVVILDLMLPQLTGWQ 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A+ PDL ++ +T A ++KPF R++V V LL
Sbjct: 61 VAQELRRDYPDLPLLMLTARGEEAERIQGLELGADDYVTKPFSPREVVARVRALLRR 117
>gi|255305139|ref|ZP_05349311.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 231
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++IL+ +D+ D+ + +AG+ +V++ ++G +A E+ +++ D++MP
Sbjct: 1 MNDKRILVVDDETDLLEMVKSIFTRAGFTQVLTASSGEAALKMCEEQEPDMMILDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + + + V+ +T L KPF ++L+ V +L
Sbjct: 61 MDGFAALKELRK-TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAIL 119
Query: 119 TI 120
Sbjct: 120 KR 121
>gi|225352746|ref|ZP_03743769.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225156353|gb|EEG69922.1| hypothetical protein BIFPSEUDO_04376 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 243
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+++T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|218670388|ref|ZP_03520059.1| two component transcriptional regulator, winged helix family
protein [Rhizobium etli GR56]
Length = 231
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +R + AL + G + G A R L++ DI MP+MD
Sbjct: 1 MAPRILVVDDEPHIRDVICFALERGGLTSTAVRGGTEAMAAFRRGNIDLIILDIGMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + L ++F++ ++KPF R+L+ V +L
Sbjct: 61 GLEVCRQIRQ-TSALPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELIARVKAILKR 119
>gi|197334071|ref|YP_002154883.1| protein PetR [Vibrio fischeri MJ11]
gi|197315561|gb|ACH65008.1| protein PetR [Vibrio fischeri MJ11]
Length = 239
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NHKILVVDDDARLRSLLERYLSEQGFQVRSVANSEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSANNMLPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|229505755|ref|ZP_04395265.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae BX 330286]
gi|229509211|ref|ZP_04398696.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae B33]
gi|229519579|ref|ZP_04409022.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae RC9]
gi|229520913|ref|ZP_04410335.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae TM 11079-80]
gi|229608866|ref|YP_002879514.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae MJ-1236]
gi|255744160|ref|ZP_05418113.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholera CIRS 101]
gi|262155734|ref|ZP_06028858.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae INDRE 91/1]
gi|262169924|ref|ZP_06037614.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae RC27]
gi|229342146|gb|EEO07142.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae TM 11079-80]
gi|229344268|gb|EEO09243.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae RC9]
gi|229353783|gb|EEO18719.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae B33]
gi|229357978|gb|EEO22895.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae BX 330286]
gi|229371521|gb|ACQ61944.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae MJ-1236]
gi|255738100|gb|EET93492.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholera CIRS 101]
gi|262021658|gb|EEY40369.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae RC27]
gi|262030445|gb|EEY49085.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae INDRE 91/1]
Length = 1129
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 840
>gi|228476582|ref|ZP_04061264.1| response regulator [Streptococcus salivarius SK126]
gi|322373913|ref|ZP_08048448.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
gi|228251777|gb|EEK10842.1| response regulator [Streptococcus salivarius SK126]
gi|321277285|gb|EFX54355.1| DNA-binding response regulator CsrR [Streptococcus sp. C150]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDEKNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + D +M +T ++ + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKDTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|139439877|ref|ZP_01773242.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
25986]
gi|133774805|gb|EBA38625.1| Hypothetical protein COLAER_02277 [Collinsella aerofaciens ATCC
25986]
Length = 240
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ +R + L + GY VV +G SA ++ + F L++ D+++P++ G
Sbjct: 6 KKILLVEDEKAIRDAVAAYLEREGYWVVGVGDGQSAIEEFEKHQFDLVVLDLMLPKIPGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + D+ ++ +T + L KPF R+LV V L +
Sbjct: 66 RVCRTIRD-TSDVPIIMLTAKGEIEDRIIGLELGADDYLIKPFSPRELVARVRALFRRAH 124
>gi|95931065|ref|ZP_01313792.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95132874|gb|EAT14546.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 471
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 72/122 (59%), Gaps = 1/122 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q +IL+ +D+ +R + + L + GYEV++ +G +A +KV+ + F+++++D+ MP M
Sbjct: 1 MSQPRILVVDDEAVIREAVKRILEQEGYEVITATSGHTALEKVQIDDFTVVISDLKMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ + L PD+ V+ ITG+A V D+ LSKPF + VN+ +
Sbjct: 61 GGMEVLKSIKILQPDVPVIIITGYATVETAVDAIKNGAFDYLSKPFTPPQVKEMVNKAIE 120
Query: 120 IK 121
+
Sbjct: 121 QR 122
>gi|310830024|ref|YP_003962381.1| two-component system protein response regulator [Eubacterium
limosum KIST612]
gi|308741758|gb|ADO39418.1| two-component system protein response regulator [Eubacterium
limosum KIST612]
Length = 239
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+++ILL +D+ D+ + AL K G+ V G A +E +++ DI++P+MD
Sbjct: 6 DKRILLVDDEPDITSLVETALRKEGFRCVDMAFTGKEALAACKENAPDVVILDIMLPDMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R E V+F++ + ++KPF ++LV V L
Sbjct: 66 GIEVCRAIRE-FSYCPVLFLSARNDDVDKILGLSSGGDDYITKPFSPKELVFRVKAQLRR 124
>gi|295103423|emb|CBL00967.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 224
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+A+D+ D+ L G+ V+ NGA A +V ++ ++L DI MP D
Sbjct: 1 MNAKILIADDESDIVSMLGSFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++F+T + KPF L +L V L
Sbjct: 60 GLEVCKRIRD-HISCPILFLTARIEDTDKVKGFTVGGDDYIVKPFSLMELEARVRAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|288959503|ref|YP_003449844.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288911811|dbj|BAI73300.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 253
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD ++R + + L K GY V +GA + L++ D+++P
Sbjct: 1 MDRTPHLLVVDDDREIRSLVAQFLTKHGYRVTGVRDGAEMMRTLDGARVDLIVLDLMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
DG+ L RR V+ +T L+KPF R+L+ +
Sbjct: 61 EDGLSLCRRLRATLQTAQTPVIMLTAMGEETDRIVGLEMGADDYLAKPFSPRELLARIKA 120
Query: 117 LLTI 120
+L
Sbjct: 121 VLRR 124
>gi|228910661|ref|ZP_04074472.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228848929|gb|EEM93772.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALAVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229099289|ref|ZP_04230220.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229118303|ref|ZP_04247659.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228665133|gb|EEL20619.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228684107|gb|EEL38054.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED++ +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEEILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|153956233|ref|YP_001396998.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219856556|ref|YP_002473678.1| hypothetical protein CKR_3213 [Clostridium kluyveri NBRC 12016]
gi|146349091|gb|EDK35627.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219570280|dbj|BAH08264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 230
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+A+D+ ++ + L + K G+ V+S NG A DK + ++L DI+MP D
Sbjct: 1 MTKNILIADDNIEIIKILRPYIRKEGFTVISALNGKEALDKFEQYNPQIILLDIMMPIFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + L + ++ IT + + + KPF ++V + +
Sbjct: 61 GMEVCKLIR-LKSNTPIIMITARSEDSDKIWGLNSGADDYIVKPFSPGEVVARIKAVFRR 119
>gi|329768935|ref|ZP_08260362.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
gi|328836652|gb|EGF86310.1| hypothetical protein HMPREF0433_00126 [Gemella sanguinis M325]
Length = 221
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ R + K L K Y V SC +G A D + + L++TDI+MP ++G E
Sbjct: 2 RILVVEDERDLNRIITKHLKKNNYSVDSCFDGQEALDFISYSEYDLIITDIMMPNVNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF +L+ + L+
Sbjct: 62 FIEKLRNNKNNTPVILLTAKDTLEDKIVGLDSGADDYIVKPFEFDELLARIRVLMRR 118
>gi|302386943|ref|YP_003822765.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302197571|gb|ADL05142.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 235
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ + + L G+ NG A + E SL++ D++MP++ G
Sbjct: 6 KNVLVVDDEPKILEVVCLLLESKGFRTFPAENGQRALEIFESENISLIILDLMMPDISGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + ++ +T + + + KPF L++L + +L
Sbjct: 66 EVCRAIRKK-SRVPIIMLTAKVDESDVVEGLGLGADDYVVKPFGLKELYARIEAVLRR 122
>gi|254695542|ref|ZP_05157370.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 3
str. Tulya]
gi|261215933|ref|ZP_05930214.1| two-component system response regulator [Brucella abortus bv. 3
str. Tulya]
gi|260917540|gb|EEX84401.1| two-component system response regulator [Brucella abortus bv. 3
str. Tulya]
Length = 238
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDTHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|229530428|ref|ZP_04419816.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae 12129(1)]
gi|229332201|gb|EEN97689.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae 12129(1)]
gi|327483425|gb|AEA77832.1| Chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae LMA3894-4]
Length = 1129
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 725 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 784
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 785 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 840
>gi|228914815|ref|ZP_04078424.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228845134|gb|EEM90176.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 227
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|39996204|ref|NP_952155.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39982969|gb|AAR34428.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|298505216|gb|ADI83939.1| winged-helix phosphate transcriptional response regulator
[Geobacter sulfurreducens KN400]
Length = 225
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ + L K GY ++ +GA+ + R +P L+L D+++P M G+
Sbjct: 2 KTILIIEDERDLADLVAFNLEKEGYRTLTALDGANGLELARSQPPDLILLDLMLPGMMGM 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + V+ +T + KPF R+L+ V +L
Sbjct: 62 EVCKILKKSEKTAHIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRVKAVLRR 121
>gi|28899252|ref|NP_798857.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus RIMD 2210633]
gi|153838393|ref|ZP_01991060.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus AQ3810]
gi|28807476|dbj|BAC60741.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus RIMD 2210633]
gi|149748200|gb|EDM59059.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus AQ3810]
gi|328474211|gb|EGF45016.1| sensory box sensor histidine kinase/response regulator [Vibrio
parahaemolyticus 10329]
Length = 1128
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G V +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 840
>gi|332523095|ref|ZP_08399347.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176]
gi|332314359|gb|EGJ27344.1| response regulator SaeR [Streptococcus porcinus str. Jelinkova 176]
Length = 228
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ + + L +AG+ V ++G+ A +K R+ + L+++DI+MP MD
Sbjct: 1 MTYKILLVDDEVSITDINKRYLQQAGHLVTVASDGSQALEKFRQNQYDLIISDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + P+ +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFIGEVLLEKPNQPFLFITAKISEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120
>gi|327481834|gb|AEA85144.1| two-component response regulator [Pseudomonas stutzeri DSM 4166]
Length = 224
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L + L ++GY V NG + EE F L++ D+++P +DG +
Sbjct: 2 RILVVEDEAKTADYLKRGLEESGYRVEVARNGVDGKHLIEEETFDLVILDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+F+T AV L KPF +L+ V LL
Sbjct: 62 LVQVVRQRSAHTPVLFLTARDAVEDRVRGLELGADDYLIKPFSYAELLARVRTLLRR 118
>gi|302339253|ref|YP_003804459.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301636438|gb|ADK81865.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 239
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +D+ ++ + + L G+ S ++G A + E+ + LL+ D++MP +DG
Sbjct: 5 TQRILVVDDEKELAKMICDYLSAMGFTSESASDGPRALRLIGEKEWDLLVLDVMMPGLDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++AR+ D L ++F+T A + ++KPF +++L + +L
Sbjct: 65 FDVARKVRA-DRGLPIIFLTARAEESDRILGFEIGGDDYVTKPFSMKELAARIRAVLRR 122
>gi|307731198|ref|YP_003908422.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307585733|gb|ADN59131.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 246
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ ++ +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLARIHTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|300021830|ref|YP_003754441.1| two component transcriptional regulator PhoB, winged helix family
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523651|gb|ADJ22120.1| two component transcriptional regulator PhoB, winged helix family
[Hyphomicrobium denitrificans ATCC 51888]
Length = 234
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ ED+ + L L GY+VV +G A + E+ + L + D ++P++
Sbjct: 1 MAAKIIVVEDEAPLVELLKYNLQSEGYDVVHAADGEEAELLLAEQSYDLAILDWMIPKIS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR +L ++ +T A ++KPF +++L+ + LL
Sbjct: 61 GIELCRRLRNRTETQNLPIILLTARGEEADRVRGLTTGADDYVTKPFSVQELMARIKALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|172035733|ref|YP_001802234.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
gi|171697187|gb|ACB50168.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
Length = 225
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + +F+ L GY V N+G S RE L+L D ++P + G+++
Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R + + ++ +T ++ + KPF+L +L+ V L +
Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH 123
>gi|77461827|ref|YP_351334.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77385830|gb|ABA77343.1| phosphate regulon two-component system, response regulator
[Pseudomonas fluorescens Pf0-1]
Length = 229
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GIEL
Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCLEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|16330477|ref|NP_441205.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
gi|1652968|dbj|BAA17885.1| hybrid sensory kinase [Synechocystis sp. PCC 6803]
Length = 1014
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + + + L GY +G A +V + L+L D++MP MDG+E+
Sbjct: 20 ILVVDDVKENIYVISELLEGEGYSTTFVTSGPEALQRVTQAQPDLILLDLMMPGMDGLEV 79
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+F+T + A ++KPF +L+ V L +K
Sbjct: 80 CDRLKQDPQTRDIPVIFLTASNEKQDLLQAFAKGAVDYVTKPFSPPELLARVKTHLELK 138
Score = 128 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ILLAED+ ++ L K GY V NNG A + + + ++L D+ MPEMDG
Sbjct: 739 NLTILLAEDNLINQQVAKLLLKKLGYPVDVVNNGQEALSALAKGDYDVVLMDVEMPEMDG 798
Query: 62 IELARRATEL--DPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + ++ +T ++ A +SKP L L +
Sbjct: 799 LTATEHIRRSQGRSERPWIIAVTAYSMEGDRERCLASGMNDYVSKPIRLEALQQALQ 855
>gi|315224461|ref|ZP_07866288.1| response regulator [Capnocytophaga ochracea F0287]
gi|314945482|gb|EFS97504.1| response regulator [Capnocytophaga ochracea F0287]
Length = 251
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL EDD + L L +G++V NG ++K ++E + + + D++MP DG
Sbjct: 16 NKHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETYDMCILDVMMPYKDG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E D + ++F+T L+KPF L+ ++ +L K
Sbjct: 76 FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135
Query: 122 N 122
N
Sbjct: 136 N 136
>gi|270339712|ref|ZP_06005766.2| two component system sensor histidine kinase [Prevotella bergensis
DSM 17361]
gi|270334042|gb|EFA44828.1| two component system sensor histidine kinase [Prevotella bergensis
DSM 17361]
Length = 1372
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+RR+L+ AL Y VV +NG A +K+ E SL+LTD++MPEMDG
Sbjct: 1122 SATLLIVEDNTDIRRYLVDALCDQ-YHVVEASNGKEAMEKLDAETISLVLTDVMMPEMDG 1180
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL +R + V+ ++ D ++KPF + L ++ L
Sbjct: 1181 FELCKRIKRHIQTCHIPVIILSAKVETREQLDGLLIGADDYITKPFSISILKAKIRNTLR 1240
Query: 120 IK 121
I+
Sbjct: 1241 IR 1242
>gi|260436729|ref|ZP_05790699.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. WH 8109]
gi|260414603|gb|EEX07899.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. WH 8109]
Length = 242
Score = 150 bits (381), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPE 58
+ +L+ EDDD +R + + L G+EV +C +GASA + + E P L++ D+++P
Sbjct: 12 TRSLLVVEDDDSIRETVGEVLRAEGFEVQTCADGASALNLITAETSDPVDLIVLDLMLPG 71
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G++L R ++ ++ I+ + L KPF LR+LV LL
Sbjct: 72 LGGLDLCRELRRINNTTPILVISARDSETDRVLGLEVGADDYLVKPFGLRELVARCRALL 131
Query: 119 TIKN 122
+
Sbjct: 132 RRSS 135
>gi|325971498|ref|YP_004247689.1| transcriptional regulator [Spirochaeta sp. Buddy]
gi|324026736|gb|ADY13495.1| two component transcriptional regulator, winged helix family
[Spirochaeta sp. Buddy]
Length = 224
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD D+R L GY V+ +G A + + L++ DI+MP MD
Sbjct: 1 MN-TILVVEDDSDIRELERYTLTSNGYAVLEAEHGKQALQVLGTQTVDLIILDIMMPVMD 59
Query: 61 GIELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ + L+ ++ ++ + + L+KPF + L +++ +L
Sbjct: 60 GLSFIKTLRFSLNDTTPIIVVSAKGDESDIITALELGADDYLTKPFSMNVLSSKIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|312134258|ref|YP_004001596.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
gi|311774309|gb|ADQ03796.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
Length = 217
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R+ + L K G+EV ++G A +K + +S+++ D+++P+ DG
Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVKEASDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D D V+ +T + KP +++V V +L
Sbjct: 62 VLREIRKKD-DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117
>gi|223938177|ref|ZP_03630074.1| multi-sensor signal transduction histidine kinase [bacterium
Ellin514]
gi|223893221|gb|EEF59685.1| multi-sensor signal transduction histidine kinase [bacterium
Ellin514]
Length = 1139
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++++ L + Y V + +G +A + P L+L+DI+MP +DG
Sbjct: 645 RILLADDNADMRDYVMRLLKGS-YRVEAVADGEAALKAALKHPPDLILSDIMMPRLDGFG 703
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ ++ A + L+KPF +L+ V L +
Sbjct: 704 LLREVRNNPSTRLIPVILLSARAGEESRVEGLGHGADDYLTKPFSAHELLARVRSHLRM 762
>gi|148927641|ref|ZP_01811100.1| two component transcriptional regulator, winged helix family
[candidate division TM7 genomosp. GTL1]
gi|147887013|gb|EDK72522.1| two component transcriptional regulator, winged helix family
[candidate division TM7 genomosp. GTL1]
Length = 225
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L K L + + V ++G S ++ + L++ D ++P +DG+E
Sbjct: 2 RILVVEDERKIALALKKGLEQEAFAVDVVHDGESGLSYAEDDSYDLIVLDRMLPGLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T + L KPF +L+ + LL
Sbjct: 62 ICRQLRESGAKTPIIMLTAKDRIRDRVTGLDAGADDYLVKPFAFEELLARIRSLLRR 118
>gi|39996977|ref|NP_952928.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39983865|gb|AAR35255.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|298505994|gb|ADI84717.1| winged-helix transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 238
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + ILL ED+ + R + L GY V +G +A +++ + F+L++ D+++P
Sbjct: 1 MTEDKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYDRFALIILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DG + R D + ++ +T A L+KPF+L + + V +
Sbjct: 61 GIDGFTVCERVRATDARVPILILTARADDGDRITGLDRGADDYLTKPFNLNEFLLRVRGM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|310827086|ref|YP_003959443.1| regulatory protein VanR [Eubacterium limosum KIST612]
gi|308738820|gb|ADO36480.1| regulatory protein VanR [Eubacterium limosum KIST612]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ ++ + LG GY V + A E P L + D++MPE+D
Sbjct: 1 MQTEILVVDDEQEIADLVELYLGNEGYAVRKFYSAQEALASGLENPPELAVLDVMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E ++ +T A ++KPF +LV V L
Sbjct: 61 GFTLCRRLREKY-TFPIIMLTAREEEIDKITGLAIGADDYVTKPFRPLELVARVKAQLRR 119
>gi|326202141|ref|ZP_08192011.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987936|gb|EGD48762.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 233
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN +KIL+ +D+ + + L GY+VV+ NG A + +E L++ D+++P
Sbjct: 1 MNDTAKKILVVDDEVKISEVIKSYLEHDGYKVVTALNGKEAMESYKEFNPHLIILDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ G E+ +R + + + ++ +T + + KPF R L+ V +
Sbjct: 61 DISGEEICKRIRK-NSSVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPRQLLARVAAV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|239626272|ref|ZP_04669303.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520502|gb|EEQ60368.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 226
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G+ V+ +G A D ++ +L+L D++MP+MDG
Sbjct: 5 KILVVDDEARMRKLVRDFLTNKGFTVIEAGDGEEAVDTFFAQKDIALVLLDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + + V+ +T + + + +SKPF + LV V+ +L N
Sbjct: 65 EVLKTIRK-YSQVPVIMLTARSEERDELQGFSLGVDEYISKPFSPKILVARVDAILRRSN 123
>gi|224282738|ref|ZP_03646060.1| response regulator of two-component system [Bifidobacterium bifidum
NCIMB 41171]
gi|310287197|ref|YP_003938455.1| Two-component response regulator [Bifidobacterium bifidum S17]
gi|313139897|ref|ZP_07802090.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
gi|309251133|gb|ADO52881.1| Two-component response regulator [Bifidobacterium bifidum S17]
gi|313132407|gb|EFR50024.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
Length = 245
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ +R L+ +L AG++V + +G+ A + + + L++ D+++P++DG +
Sbjct: 9 IVVVDDEPSIRELLVASLHFAGFDVATAASGSEAIEVIEKTQPDLIVLDVMLPDIDGFTV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+F+T ++KPF L ++V + +L
Sbjct: 69 TRRIRQEGIGAPVLFLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRAILRR 124
>gi|326203105|ref|ZP_08192971.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325986751|gb|EGD47581.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 230
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D++ + L K G+ + ++G A D + LLL D++MP+ D
Sbjct: 1 MDKYILIADDNEGILDILKTYAEKEGFMPLLAHDGLEAIDIFSKYHPLLLLLDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ ++ IT + + KPF +++ + +L
Sbjct: 61 GFEVCREIRQK-SNVPIIMITAKGEDSDRIMGLDIGADDYIVKPFSPGEVMARIRAILRR 119
>gi|300857304|ref|YP_003782288.1| putative sensory transduction protein [Clostridium ljungdahlii DSM
13528]
gi|300437419|gb|ADK17186.1| predicted sensory transduction protein [Clostridium ljungdahlii DSM
13528]
Length = 228
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + + AGYE N+G +A E L+L DI++P +DGI+
Sbjct: 7 KILIVDDDENICEVIKMYVESAGYETKVVNDGKTAETMFLEYKPDLVLLDIMLPNIDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + KPF ++++ + +L
Sbjct: 67 VLKWIRKEY-ETPVIMLTAKGETFDKVLGLELGADDYIVKPFEAKEMLARIKAVLRR 122
>gi|291522756|emb|CBK81049.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ + + + +L + G EV + +G AY+ + + ++L D+++PE++
Sbjct: 1 MANKVLVVDDEKLIVKGIKFSLEQDGMEVTAAYDGKEAYELAMQNDYDIILLDVMLPELN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCQMIREK-SDVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEIKARIKAIIRR 119
>gi|237809753|ref|YP_002894193.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
gi|237502014|gb|ACQ94607.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
Length = 241
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MNQ IL+ +D D+R L + L + G++V +G + F+LL+ D+++
Sbjct: 1 MNQPTLPHILVVDDHADIRDLLKRFLEQHGFKVTCARDGKEMKRLLENGHFTLLVLDLML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DG+ L R L V+ +T L+KPF+ R+L+ +
Sbjct: 61 PGEDGLTLCRDLRAR-SSLPVVMLTAMGEEMDRIIGLEMGADDYLAKPFNPRELLARIRA 119
Query: 117 LLTIKN 122
+L N
Sbjct: 120 VLRRAN 125
>gi|77361753|ref|YP_341328.1| osmolarity response regulator [Pseudoalteromonas haloplanktis
TAC125]
gi|76876664|emb|CAI87886.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Pseudoalteromonas haloplanktis TAC125]
Length = 239
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R L + L + G+ V + N + E F L++ D+++P DG+
Sbjct: 7 KVLVVDDDMRLRSLLERYLVEQGFIVRTAGNSEQMDRLIERENFHLMVLDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + D+ ++ +T + KPF+ R+L+ + +L +
Sbjct: 67 ICRRLRQKENDIPIVMLTAKGDEVDRIIGLELGADDYIPKPFNPRELLARIKAILRRR 124
>gi|260063704|ref|YP_003196784.1| two-component system response regulator [Robiginitalea biformata
HTCC2501]
gi|88783149|gb|EAR14322.1| two-component system response regulator [Robiginitalea biformata
HTCC2501]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL ED+ + F+ + L ++GY V C +G + +++ F L++ DIV+P MD
Sbjct: 1 MGNRILLIEDEYAIASFVTQGLQESGYAVAVCYDGEKGLEMLQDGDFDLVILDIVLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+AR DL ++ +T + L KPF ++L V L
Sbjct: 61 GREVARTIRGQGLDLPILMLTALGSTENVVRGLDSGADDYLVKPFKFKELEARVRALSRR 120
Query: 121 KN 122
++
Sbjct: 121 RS 122
>gi|108763454|ref|YP_632339.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
gi|108467334|gb|ABF92519.1| DNA-binding response regulator [Myxococcus xanthus DK 1622]
Length = 232
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++ +L+ +DD +R + AL + G+ V +G +A +V +L++ DI+MPE
Sbjct: 1 MAERPTVLVVDDDPHLREIVRFALEQGGFRVDEAADGRAALTQVDRGLPALIVLDIMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+ + R +L ++F++ L+KPF R+LV V +L
Sbjct: 61 LDGLAVCREVRRKH-ELPIVFLSSRDDEVDRILGLELGGDDYLTKPFSPRELVARVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|312877360|ref|ZP_07737325.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311795834|gb|EFR12198.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
Length = 234
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ + + +D+ D+ + + L + GY V + NG S ++ + +++ DI++P++
Sbjct: 1 MSEYTVYVVDDEKDILDLVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ +R + + D+ ++ ++ + +SKPF L +L + ++L
Sbjct: 61 DGYEICKRIRK-NSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|259906787|ref|YP_002647143.1| DNA-binding transcriptional regulator CpxR [Erwinia pyrifoliae
Ep1/96]
gi|224962409|emb|CAX53864.1| Two-component response regulator [Erwinia pyrifoliae Ep1/96]
gi|283476573|emb|CAY72401.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Erwinia pyrifoliae DSM 12163]
gi|310765997|gb|ADP10947.1| DNA-binding transcriptional regulator CpxR [Erwinia sp. Ejp617]
Length = 233
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ V+ +G A + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVLVAGDGEQALTLLDS-TVDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|254424776|ref|ZP_05038494.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196192265|gb|EDX87229.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 262
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L K G+ C +G +A D+ R L++ D+++P +DG+E+
Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + D +M +T + + KPF R+LV V +L
Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRR 120
>gi|300119329|ref|ZP_07057007.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|298723284|gb|EFI64048.1| DNA-binding response regulator [Bacillus cereus SJ1]
Length = 231
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|257054346|ref|YP_003132178.1| response regulator with CheY-like receiver domain-containing
protein and winged-helix DNA-binding domain-containing
protein [Saccharomonospora viridis DSM 43017]
gi|256584218|gb|ACU95351.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein
[Saccharomonospora viridis DSM 43017]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ +G A ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAAIATDGQQALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTDVCRELRQR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRR 118
>gi|159030857|emb|CAO88536.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 246
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIAELVSINLEMAGYDVNPAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ ++ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTSDIPILMMTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|91788575|ref|YP_549527.1| osmolarity response regulator [Polaromonas sp. JS666]
gi|91697800|gb|ABE44629.1| two component transcriptional regulator, winged helix family
[Polaromonas sp. JS666]
Length = 245
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G+EV+ + + + + L++ D++MP DG+
Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFEVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L+KPF+ R+L+ ++ +L +
Sbjct: 72 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129
>gi|302387812|ref|YP_003823634.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302198440|gb|ADL06011.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 223
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L G+ VV +NG A D ++ L++ D++MP+MDG
Sbjct: 5 KILVVDDEARMRKLVKDFLSVKGFSVVEASNGEEAVDLFFEQKDIVLIILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + + ++ +T + + +SKPF + LV V +L N
Sbjct: 65 ETCKTIRK-YSQVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAILRRSN 123
>gi|258404600|ref|YP_003197342.1| two component transcriptional regulator, winged helix family
[Desulfohalobium retbaense DSM 5692]
gi|257796827|gb|ACV67764.1| two component transcriptional regulator, winged helix family
[Desulfohalobium retbaense DSM 5692]
Length = 230
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+LL ED+ D+ L G+ V++ NG A D + P L++ D+++P DG
Sbjct: 3 TYTVLLVEDEVDILNLLRINFENGGFRVLTAENGFQALDVLSSAPVDLVVLDLMLPGKDG 62
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R L V+ +T + KPF R+L+ ++
Sbjct: 63 LEVCRELRSRESTKHLPVIMLTAKGDEVDRIVGLELGADDYVVKPFSPRELLLRAKAVMR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|225571365|ref|ZP_03780361.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
15053]
gi|225159841|gb|EEG72460.1| hypothetical protein CLOHYLEM_07463 [Clostridium hylemonae DSM
15053]
Length = 234
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K ++ + ++G A +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDENIAELISLYLTKECFDTMMVHDGEKALIAYDTYQPNLILLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R ++ ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIRAK-SNVPIIMLSAKGEVFDKVLGLELGADDYMMKPFDSKELVARVKAVLRR 121
>gi|171058578|ref|YP_001790927.1| osmolarity response regulator [Leptothrix cholodnii SP-6]
gi|170776023|gb|ACB34162.1| two component transcriptional regulator, winged helix family
[Leptothrix cholodnii SP-6]
Length = 244
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +DD +R L + L + G+EV+ + + + E L++ D+++P DG+
Sbjct: 11 RIVVVDDDARIRDLLRRYLTQEGFEVLLAEDSKALNRILTRETVDLIVLDLMLPGEDGLS 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L KPF+ R+L+ +N +L +
Sbjct: 71 ICRRLRAANDITPIIMLTAKVDDVDRIVGLEVGADDYLPKPFNPRELLARINAVLRRR 128
>gi|46201806|ref|ZP_00054307.2| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 241
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 52/119 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +DD ++R L K L + V + +G + E L++ D+++P DG
Sbjct: 5 NPHILVVDDDREIRDLLTKFLMRHNLRVSAAKDGVEMMKMLDERRIDLVVLDLMLPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L RR E + ++ +T L KPF+ R+L+ + +L
Sbjct: 65 LSLCRRMRESRSGVPIVMLTAMGEDTDRIVGLEMGADDYLPKPFNPRELLARIKAVLRR 123
>gi|186685939|ref|YP_001869135.1| response regulator receiver modulated PAS/PAC sensor protein
[Nostoc punctiforme PCC 73102]
gi|186468391|gb|ACC84192.1| response regulator receiver modulated PAS/PAC sensor protein
[Nostoc punctiforme PCC 73102]
Length = 294
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GYE+ NG +A + P L+L DI+MPEM+G E+
Sbjct: 37 ILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEMNGYEV 96
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E+ D+ V+FI+ V + A ++KPF ++ V LTI+
Sbjct: 97 CQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSEEEVFARVENNLTIR 155
>gi|228923572|ref|ZP_04086852.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228836041|gb|EEM81402.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A +E L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVIFEQEKVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|182415603|ref|YP_001820669.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
gi|177842817|gb|ACB77069.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
Length = 376
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L + L + G +V + NG A D VR+ L+L D++MP+MDGIE+
Sbjct: 6 ILVVDDQPINVQLLKRKLEREGIQVTAAYNGLEALDLVRKTKPDLILLDVMMPDMDGIEV 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+R EL + ++FIT + + ++KP L + + V L
Sbjct: 66 CQRLQADELTRSIPIIFITARTSKEGKIEGLNVGAVDYITKPIDLDETLARVQTQLR 122
>gi|148558726|ref|YP_001257449.1| putative transcriptional regulatory protein OmpR [Brucella ovis
ATCC 25840]
gi|148370011|gb|ABQ62883.1| putative transcriptional regulatory protein OmpR [Brucella ovis
ATCC 25840]
Length = 238
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEGAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|114765354|ref|ZP_01444471.1| phosphate regulon transcriptional regulatory protein PhoB
[Pelagibaca bermudensis HTCC2601]
gi|114542334|gb|EAU45363.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius sp. HTCC2601]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V + NG A + EE +++ D ++P + GIE
Sbjct: 7 TVLVVEDEASQREVLRYNLEAEGFRVAAAGNGEEALVMLDEEEPDVIVLDWMLPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ ++ + + KP+ LR+L+ V L
Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEIDRVRGLETGADDYVVKPYSLRELMARVKAQLRR 125
>gi|22536576|ref|NP_687427.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|25010502|ref|NP_734897.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
gi|76787873|ref|YP_329113.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|76799057|ref|ZP_00781250.1| putative two-component response regulator [Streptococcus agalactiae
18RS21]
gi|77406449|ref|ZP_00783506.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|77408785|ref|ZP_00785515.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77411642|ref|ZP_00787982.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|77413961|ref|ZP_00790135.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|22533411|gb|AAM99299.1|AE014209_12 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|23094855|emb|CAD46073.1| gbs0429 [Streptococcus agalactiae NEM316]
gi|76562930|gb|ABA45514.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|76585594|gb|EAO62159.1| putative two-component response regulator [Streptococcus agalactiae
18RS21]
gi|77159997|gb|EAO71134.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|77162286|gb|EAO73257.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|77172630|gb|EAO75769.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77174951|gb|EAO77763.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|319744355|gb|EFV96715.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
13813]
Length = 228
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QK+LL +D+ ++ + L +AGYEV +G A +V E F L+++DI+MP+MD
Sbjct: 1 MTQKLLLVDDEFEIIDINRRYLEQAGYEVSVAADGIEALKEVDENRFDLIISDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + +P+ +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFISEVLVREPNQPFLFITAKVSEPDKIYSLSMGADDFISKPFSPRELVLRVKNILRR 120
>gi|301053529|ref|YP_003791740.1| alkaline phosphatase synthesis response regulator [Bacillus
anthracis CI]
gi|300375698|gb|ADK04602.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
biovar anthracis str. CI]
Length = 229
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|220906227|ref|YP_002481538.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7425]
gi|219862838|gb|ACL43177.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
PCC 7425]
Length = 566
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 1 MNQK------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI 54
M++ IL+ +D L L AG++V+ +G SA K L+L DI
Sbjct: 1 MSEHTTEKGTILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANYITPDLILLDI 60
Query: 55 VMPEMDGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
+MP MDG E +R + + V+F+T A ++KP +++
Sbjct: 61 LMPGMDGFETCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQYEEVLA 120
Query: 113 EVNRLLTIK 121
V L ++
Sbjct: 121 RVETHLRLQ 129
>gi|187925240|ref|YP_001896882.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|187716434|gb|ACD17658.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 220
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A +P+ L+L D+ +P+ DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAAGSQPYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|94264089|ref|ZP_01287888.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455505|gb|EAT05695.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 493
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 69/121 (57%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD
Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ P L V+ ITG+A V ++ + KPF + + V ++
Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQ 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|94269909|ref|ZP_01291598.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451023|gb|EAT01990.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 493
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 69/121 (57%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ +MR L +AL ++G++V NG A + + ++P L++TDI MPEMD
Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ P L V+ ITG+A V ++ + KPF + + V ++
Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVFKQ 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|78058361|gb|ABB17540.1| VanRG2 [Enterococcus faecalis]
Length = 232
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ ++ + L GY V NG A + + L++ D+++P++D
Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNDGYTVHKFYNGTDALKCIESQNLDLVILDVMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFRICQKIREQYFY-PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|150388920|ref|YP_001318969.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149948782|gb|ABR47310.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 232
Score = 150 bits (380), Expect = 6e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ ED+ ++ + L K YE + +NG A D +++ F ++ D+++P + G
Sbjct: 5 KKRVLIVEDEKNIADVIKAYLEKEKYEAIVTHNGKEAIDIFQQQSFDFVILDLMLPGLSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R L D+ ++ +T ++KPF ++L+ V ++
Sbjct: 65 EEICNRIR-LQSDVPILMLTAKVEETDQIHGLDIGADDYMTKPFSPKELMARVRAIMRR 122
>gi|253583326|ref|ZP_04860524.1| two component transcriptional regulator [Fusobacterium varium ATCC
27725]
gi|251833898|gb|EES62461.1| two component transcriptional regulator [Fusobacterium varium ATCC
27725]
Length = 221
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R+ + L + GY V +G D + + +++ DI+MP++DG
Sbjct: 2 KKILVVDDEWKIRKLIKDYLVREGYSVDEAGDGEEGLDLFFQTTYDIVILDIMMPKIDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T A + + + + KPF+ + LV +V LL
Sbjct: 62 SVCRKIREE-SQVPIIMLTARADESDQLFGFELETDEYMIKPFNPKLLVAKVKALLRR 118
>gi|229011292|ref|ZP_04168484.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
gi|228749948|gb|EEL99781.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
Length = 225
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E + + DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVRVEMAIIDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDLCYELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119
>gi|218283223|ref|ZP_03489293.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
gi|218216041|gb|EEC89579.1| hypothetical protein EUBIFOR_01881 [Eubacterium biforme DSM 3989]
Length = 233
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+A+D+ ++R L L GYEV+ +G L++ DI+MP M+
Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + E ++ ++F+T + + L+KPF +L V LL
Sbjct: 60 GYQTCLKLRE-TSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRR 118
>gi|186683187|ref|YP_001866383.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
gi|186465639|gb|ACC81440.1| multi-sensor hybrid histidine kinase [Nostoc punctiforme PCC 73102]
Length = 1416
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILLA+D+ DMR ++ + L + YEV S +G +A D R L+LTD++MP +DG
Sbjct: 642 SARILLADDNSDMRDYVKRLLSQQ-YEVESVADGLAALDSARGRVPDLVLTDVMMPGLDG 700
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + ++ ++ A + L KPF R+L+ V L
Sbjct: 701 FGLLQELRANPQTKKVPIILLSARAGEEARVEGLEAGADDYLIKPFSARELLARVEAALK 760
Query: 120 IKN 122
+ +
Sbjct: 761 MAH 763
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 4/120 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DDDD R F L +AG +V++ + A + E +LL+DI MPE DG L
Sbjct: 1295 ILVVDDDDDTREFHTFVLEQAGAKVMAVASAKEALQALAESEPDILLSDIGMPETDGYML 1354
Query: 65 ARRATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L + + +T +A + A + LSKP +LV + L+
Sbjct: 1355 MRQIRALQLKQAKQIPAIALTAYAGEINQQQAIASGFQRHLSKPVEPDELVKAIATLIGR 1414
>gi|89072663|ref|ZP_01159228.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
SKA34]
gi|89051483|gb|EAR56937.1| putative DNA-binding response regulator PhoB [Photobacterium sp.
SKA34]
Length = 229
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + +A +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|302526266|ref|ZP_07278608.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302435161|gb|EFL06977.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 266
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R L AL G+ V + G ++ E+P +++ D+++P MDG E
Sbjct: 39 RVLLIEDDRAVRDGLRLALTYQGHTVDAVETGEEGLARLAEDPADVVVLDLMLPGMDGFE 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR DL ++ +T + KP R L + +L
Sbjct: 99 VCRRIRAAG-DLPIIMLTARNDDIDVVAGLEAGADDYVVKPAQARVLEARIRAVLRR 154
>gi|296535704|ref|ZP_06897875.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseomonas cervicalis ATCC 49957]
gi|296263965|gb|EFH10419.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseomonas cervicalis ATCC 49957]
Length = 238
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ ED+ + L L K G+ V +G A +V E P L+L D ++P +
Sbjct: 8 MARPTILVVEDEAPLLTLLRYNLEKQGFRVDEAADGQEALMRVAEAPPDLVLLDWMLPAL 67
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ R+ DL ++ +T + ++KPF + L+ + L
Sbjct: 68 SGLEVCRQLRRRPDTRDLPIIMVTARTEDQDAVRALDTGADDYIAKPFVMDALMARIRAL 127
Query: 118 LTI 120
L
Sbjct: 128 LRR 130
>gi|256380199|ref|YP_003103859.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255924502|gb|ACU40013.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 226
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ EDD + + L G+EV+ ++G S + E L++ D+++P D
Sbjct: 1 MTRRVLVVEDDPTIADSVAARLRAEGFEVLVAHDGPSGVGRALAEGPDLVVLDVMLPGFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T A L+KPF LR+L V+ LL
Sbjct: 61 GLEVCRRVQAQRA-VPVLMLTARGEETDLLVGLAVGADDYLTKPFSLRELAARVHALLRR 119
>gi|228933518|ref|ZP_04096369.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228826116|gb|EEM71898.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 227
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|283797227|ref|ZP_06346380.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
gi|291075076|gb|EFE12440.1| DNA-binding response regulator VicR [Clostridium sp. M62/1]
gi|295092411|emb|CBK78518.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 232
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + + +L + G EV +G A + RE+ + ++L D+++P+ DG E
Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIEMAREKEYDIVLLDVMLPKRDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 63 VCQAIRE-FSEMPIIMLTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 118
>gi|154498426|ref|ZP_02036804.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
29799]
gi|150272494|gb|EDM99679.1| hypothetical protein BACCAP_02415 [Bacteroides capillosus ATCC
29799]
Length = 226
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + R + L GYEV +G +K F L+L DI++P M G+E
Sbjct: 3 KILLVEDEEKLARVVELELRYEGYEVEKAFDGREGLEKALSGGFDLVLLDIMLPSMSGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + V+ +T V ++KPF + +L+ + L +
Sbjct: 63 VLRRLRRE-SQVPVIMVTARDTVVDKVSGLDSGADDYITKPFEIEELLARIRAALRKR 119
>gi|91785401|ref|YP_560607.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91689355|gb|ABE32555.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
Length = 245
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD +R + L G++V + +G + +++ E +L++ DI+MPE+D
Sbjct: 1 MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLQDGMALQRQLQHERPALIVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|313157188|gb|EFR56618.1| response regulator receiver domain protein [Alistipes sp. HGB5]
Length = 226
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +D+ D+ F+ L K GYEV + NGA A + L+L D++MP MD
Sbjct: 5 MSHRILLVDDEPDILEFVKYTLVKEGYEVFTAQNGAEALKAAAQHRPHLILLDMMMPVMD 64
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + R E D V+F++ L+KP ++ LV+ V +L
Sbjct: 65 GAQTCRAIREDPQLRDTMVVFLSALGEEEQQLAGFGVGADDYLTKPIKMKLLVSRVQAIL 124
Query: 119 TI 120
Sbjct: 125 KR 126
>gi|288555474|ref|YP_003427409.1| two-component response regulator [Bacillus pseudofirmus OF4]
gi|288546634|gb|ADC50517.1| two-component response regulator [Bacillus pseudofirmus OF4]
Length = 246
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ EDD ++ + L + L + GY+VV ++G + LLL D+++P++D
Sbjct: 12 MTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ ++ + S ++KPF +LV V L
Sbjct: 72 GFEVCRQVRQQ-SEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRR 130
Query: 121 KN 122
+
Sbjct: 131 YH 132
>gi|269961959|ref|ZP_06176314.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi 1DA3]
gi|269833282|gb|EEZ87386.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi 1DA3]
Length = 1128
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G + +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + L+KPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLT 840
>gi|307150227|ref|YP_003885611.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306980455|gb|ADN12336.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 246
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTSDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|153835385|ref|ZP_01988052.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
gi|148868087|gb|EDL67256.1| sensory box sensor histidine kinase/response regulator [Vibrio
harveyi HY01]
Length = 1128
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G + +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + L+KPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLT 840
>gi|115526874|ref|YP_783785.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115520821|gb|ABJ08805.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 234
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MSARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERTPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|222081138|ref|YP_002540501.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221725817|gb|ACM28906.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 241
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I + +D D+R + + L + GY V ++G + + L++ D++MP
Sbjct: 1 MQKAAHIAVVDDHADIRNLVGQYLEQQGYRVSVADSGVALRRILERSAVDLVVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + R D+ ++F+T L KPF+ R+L+ + +L
Sbjct: 61 EDGLSVCRHLRA-TMDVPIIFLTAMTEDTDRIIGLELGADDYLVKPFNPRELLARIRAVL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRAN 123
>gi|30260460|ref|NP_842837.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47525548|ref|YP_016897.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183302|ref|YP_026554.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|165871408|ref|ZP_02216056.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167634255|ref|ZP_02392577.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640089|ref|ZP_02398356.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170689714|ref|ZP_02880889.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170709461|ref|ZP_02899865.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|190567317|ref|ZP_03020231.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196036931|ref|ZP_03104313.1| DNA-binding response regulator [Bacillus cereus W]
gi|218901477|ref|YP_002449311.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227812952|ref|YP_002812961.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228931776|ref|ZP_04094674.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944083|ref|ZP_04106463.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229602359|ref|YP_002864905.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254686671|ref|ZP_05150529.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254724747|ref|ZP_05186530.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254736996|ref|ZP_05194701.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254744175|ref|ZP_05201857.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254756050|ref|ZP_05208079.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254761867|ref|ZP_05213716.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30253781|gb|AAP24323.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47500696|gb|AAT29372.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177229|gb|AAT52605.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164712892|gb|EDR18421.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511900|gb|EDR87279.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530569|gb|EDR93284.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170125628|gb|EDS94551.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170666328|gb|EDT17116.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|190561444|gb|EDV15415.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195990454|gb|EDX54440.1| DNA-binding response regulator [Bacillus cereus W]
gi|218535735|gb|ACK88133.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227007477|gb|ACP17220.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228815596|gb|EEM61837.1| hypothetical protein bthur0007_2600 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827890|gb|EEM73626.1| hypothetical protein bthur0009_2630 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|229266767|gb|ACQ48404.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 237
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + +G A + +S+++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHEVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>gi|302871492|ref|YP_003840128.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302574351|gb|ADL42142.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 234
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ + +D+ D+ + + L + GY V + +G S + + +++ DI++P++DG E
Sbjct: 5 TVYVVDDEKDILELVSEYLTQKGYAVRTFESGESFLGEFEKSEPDIVILDIMLPDIDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R + + D+ ++ ++ + +SKPF L +L + ++L N
Sbjct: 65 ICKRIRK-NSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVN 122
>gi|297622472|ref|YP_003703906.1| winged helix family two component transcriptional regulator
[Truepera radiovictrix DSM 17093]
gi|297163652|gb|ADI13363.1| two component transcriptional regulator, winged helix family
[Truepera radiovictrix DSM 17093]
Length = 253
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + L GY + ++G S ++ R E L++ D+++P++ G +
Sbjct: 18 TILIVEDERAIAEVVADNLRDEGYRTLVASDGPSGLERWRAERPDLVILDVMLPQLSGFD 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R V+F++ L KPFHL + + V LL +
Sbjct: 78 LCRTRRTEGDATPVLFLSAKGHPEDRVAGLRAGGDDYLPKPFHLPEFLLRVENLLRRR 135
>gi|307731193|ref|YP_003908417.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307585728|gb|ADN59126.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 247
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD +R + + L G++V + +G + K+R+E +L++ DI+MPE+D
Sbjct: 1 MNPSILVVDDDPVVRNLVSQYLEGRGFKVATLEHGMALQSKLRDERPALVVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|260223180|emb|CBA33484.1| hypothetical protein Csp_B19290 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 396
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +R L L G+EV++ +G A + L+LTD++MP +DG
Sbjct: 14 KILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHKPDLVLTDVMMPGLDGFG 73
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E L ++ +T A L+KP +L+ V+ L
Sbjct: 74 LVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRREELLEAVHARLER 132
>gi|238921655|ref|YP_002935170.1| DNA-binding transcriptional regulator CpxR [Edwardsiella ictaluri
93-146]
gi|238871224|gb|ACR70935.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Edwardsiella ictaluri 93-146]
Length = 232
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EV+ ++G A + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAILDA-SIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|260185480|ref|ZP_05762954.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CPHL_A]
gi|289446155|ref|ZP_06435899.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CPHL_A]
gi|289419113|gb|EFD16314.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CPHL_A]
Length = 253
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDSGDYDAVVLDVMLPGIDGFE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 140
>gi|229175534|ref|ZP_04303044.1| Two-component response regulator [Bacillus cereus MM3]
gi|228607930|gb|EEK65242.1| Two-component response regulator [Bacillus cereus MM3]
Length = 229
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|223369872|gb|ACM88804.1| two-component system response regulator [Arthrobacter sp. A3]
Length = 258
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G+ V C +GA A++ + L+L D+++P MD
Sbjct: 35 MKARILVVDDDEALAEMIGIVLRNDGFGPVFCGDGAKAFEVSQANKPDLVLLDLMLPGMD 94
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R D+ ++ +T + + ++KPF +LV V L
Sbjct: 95 GIEICRLIRAE-SDVPIVMLTAKSDTSDVVRGLESGADDYVAKPFKPAELVARVRARLR 152
>gi|154687043|ref|YP_001422204.1| PhoP [Bacillus amyloliquefaciens FZB42]
gi|154352894|gb|ABS74973.1| PhoP [Bacillus amyloliquefaciens FZB42]
Length = 239
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + L L ++GY+V++ ++G A + E L++ D+++P++D
Sbjct: 1 MNKKILVVDDEQSIVTLLQYNLERSGYDVITASDGEEALELAENENPDLIVLDVMLPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ ++ + + ++ +T ++KPF R++ V +L
Sbjct: 61 GIDVCKQLRQQKMMVPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVTARVKAILRR 120
>gi|56752230|ref|YP_172931.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81300682|ref|YP_400890.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|56687189|dbj|BAD80411.1| two-component response regulator [Synechococcus elongatus PCC 6301]
gi|81169563|gb|ABB57903.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 226
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 52/122 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL EDD + F+ + L GY+V NNG R LL+ D ++P +
Sbjct: 1 MNNHILLIEDDPKLLLFVEQELSLEGYQVTVANNGLDGLSLARSIQPDLLILDWMLPTLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T ++ ++KPF + +L+ V L
Sbjct: 61 GVDICLRLRSTGVQTPIILLTAKDEISDRVSGLNSGADDYVTKPFSIEELLARVKAQLRR 120
Query: 121 KN 122
N
Sbjct: 121 VN 122
>gi|67924495|ref|ZP_00517917.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67853668|gb|EAM49005.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 236
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L + ++ + +G +A D + + L++ D+++P++DG+E
Sbjct: 2 KILIVEDEMEIAKIIQTTLERESFDCLVAYDGLTALDLFQNQEPDLIILDLMLPKLDGLE 61
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++ +T + L KPF +L+ V LL
Sbjct: 62 VCTRIRQKTTTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELLARVRALLRR 120
>gi|306819902|ref|ZP_07453555.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304552059|gb|EFM39997.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 244
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI + +D+ +R + L K GY+ +N A ++ + + L++ DI+M EMDG+
Sbjct: 12 KKIYIVDDEQRIRELIQMYLKKEGYDTKIFSNAKDALEEFKNQEPDLMILDIMMREMDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + D+ ++F++ + L+KPF R+L+ V +L
Sbjct: 72 ELCREIRK-TSDVPIIFVSARSEELDRILGLELGADDYLAKPFSPRELMVRVKTILKR 128
>gi|300779614|ref|ZP_07089470.1| two component system response regulator [Corynebacterium genitalium
ATCC 33030]
gi|300533724|gb|EFK54783.1| two component system response regulator [Corynebacterium genitalium
ATCC 33030]
Length = 224
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+E V +G +A R++ L+L D+++P M
Sbjct: 1 MPPKILVVDDDPAISEMLTIVLEAEGFEAVPVTDGGAAVGAFRDQDPDLVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ + + ++ ++ +T ++KPF R+L+ + L
Sbjct: 61 GVDICKEIRKE-SNVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPRELIARIRARLR 118
>gi|239617943|ref|YP_002941265.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
gi|239506774|gb|ACR80261.1| two component transcriptional regulator, winged helix family
[Kosmotoga olearia TBF 19.5.1]
Length = 239
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K IL+ +D+ + L L K GY+V+ + A V + + + DI++P M
Sbjct: 1 MAKKNILVIDDEPSIVELLSFNLKKEGYDVLKAYDAEEALKIVEDNDVDMFIVDIMLPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG EL R E V+F++ + ++KPF +R+ + + +
Sbjct: 61 DGFELVRNLRSTEKHRHTPVIFLSAKSEEFDKVLGLELGADDYITKPFSVREALARIRAI 120
Query: 118 LTI 120
Sbjct: 121 FRR 123
>gi|168334022|ref|ZP_02692241.1| two component transcriptional regulator, winged helix family
protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 227
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K L+ +D+ + + ++ +L + G++V S +GA A + ++ E + +++ D+++PE
Sbjct: 1 MKIKALVVDDEKLIVKGIVFSLSQEGWDVDSAYDGAEAINAIKSENYDVVILDVMLPEYT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E ++ ++ +T ++KPF++ +L + +L
Sbjct: 61 GLEVCQIVRE-FSNVPIIMLTAKGDDMDKIMGLEYGADDYITKPFNVLELKARIKAVLRR 119
>gi|126031095|pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|25029050|ref|NP_739104.1| hypothetical protein CE2494 [Corynebacterium efficiens YS-314]
gi|23494337|dbj|BAC19304.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 240
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G+ V++ ++G RE + D++MP MDG E
Sbjct: 14 KVLVVDDEPNIVELLTVSLKFQGFNVMTASDGNEGLKIAREFRPDAYILDVMMPGMDGFE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+++T AV ++KPF L +++ + +L
Sbjct: 74 LLTKLRAEGLDGPVLYLTAKDAVENRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 130
>gi|69244455|ref|ZP_00602871.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|257879039|ref|ZP_05658692.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257881663|ref|ZP_05661316.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257890891|ref|ZP_05670544.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|258615327|ref|ZP_05713097.1| two component transcriptional regulator [Enterococcus faecium DO]
gi|260558562|ref|ZP_05830758.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|293562842|ref|ZP_06677314.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
gi|293568418|ref|ZP_06679738.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|294623349|ref|ZP_06702209.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|68196396|gb|EAN10824.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Enterococcus faecium DO]
gi|257813267|gb|EEV42025.1| transcriptional regulator [Enterococcus faecium 1,230,933]
gi|257817321|gb|EEV44649.1| transcriptional regulator [Enterococcus faecium 1,231,502]
gi|257827251|gb|EEV53877.1| transcriptional regulator [Enterococcus faecium 1,231,410]
gi|260075736|gb|EEW64042.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium C68]
gi|291588754|gb|EFF20582.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1071]
gi|291597243|gb|EFF28434.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|291605166|gb|EFF34628.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1162]
Length = 222
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 1 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|325679875|ref|ZP_08159444.1| putative heme response regulator HssR [Ruminococcus albus 8]
gi|324108313|gb|EGC02560.1| putative heme response regulator HssR [Ruminococcus albus 8]
Length = 224
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +RR + AL + GY+ + N+G A D + + L+++DI+MP MDG EL
Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTANDGVEALDMLEKTNIDLIISDIMMPNMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D + ++ +T + + + KP + +++ V LL
Sbjct: 64 TRQLRNADFQIPIIMVTAKESFEDKKEGFGAGADDYMVKPIDINEMILRVGALLKR 119
>gi|257888948|ref|ZP_05668601.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257893831|ref|ZP_05673484.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|293378616|ref|ZP_06624776.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
gi|257825004|gb|EEV51934.1| transcriptional regulator [Enterococcus faecium 1,141,733]
gi|257830210|gb|EEV56817.1| transcriptional regulator [Enterococcus faecium 1,231,408]
gi|292642747|gb|EFF60897.1| response regulator receiver domain protein [Enterococcus faecium
PC4.1]
Length = 222
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 1 MN-RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|170077923|ref|YP_001734561.1| two-component response regulator [Synechococcus sp. PCC 7002]
gi|169885592|gb|ACA99305.1| two-component response regulator [Synechococcus sp. PCC 7002]
Length = 249
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILIIDDDPAIAELVAINLEMAGYDVSRAEDGIKGQALAVQLQPDLVMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E D+ ++ +T D L+KPF + +++ V LL
Sbjct: 63 VCQRIRREERTADIPILMLTALGQTQDKVDGFNAGADDYLTKPFEVEEMLVRVRALLRRS 122
Query: 122 N 122
+
Sbjct: 123 D 123
>gi|156975687|ref|YP_001446594.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
gi|156527281|gb|ABU72367.1| hypothetical protein VIBHAR_03422 [Vibrio harveyi ATCC BAA-1116]
Length = 1128
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + ++G + +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRVRTISDGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + L+KPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLTKPFNKQELAARIQAHLT 840
>gi|17231163|ref|NP_487711.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17132804|dbj|BAB75370.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 407
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D D + L + GY V + NG SA +++ P L+L D++MP MDG
Sbjct: 22 SGKILVVDDSPDNVFLIKTILEEEGYTVSTAENGISALAELQASPCDLVLLDLMMPGMDG 81
Query: 62 IELARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ RR +L + ++ IT A + KP + +L+ V LL
Sbjct: 82 YEVTRRVRGEMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLL 140
Query: 119 TIKN 122
+K+
Sbjct: 141 RLKH 144
>gi|150016605|ref|YP_001308859.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903070|gb|ABR33903.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 225
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 3/124 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M ++IL+ +D+ +R+ + L K GY + ++G A + EE L++ D+++PE
Sbjct: 1 MKGKRILVVDDEPLIRKLVTDFLKKQGYVTIEADDGKKAMNLFSNEENIDLIILDVMLPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG + R + + ++ +T + +SKPF L+ VN +L
Sbjct: 61 YDGFTVCREIRKK-SKVPIIMLTARGEEFDEVFGLDIGADEYISKPFSPNILIARVNAVL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRAN 123
>gi|299134022|ref|ZP_07027215.1| two component transcriptional regulator, winged helix family
[Afipia sp. 1NLS2]
gi|298590769|gb|EFI50971.1| two component transcriptional regulator, winged helix family
[Afipia sp. 1NLS2]
Length = 234
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MNARILVVEDEEALSTLLRYNLDAEGYDVETVARGDDADTRLKERVPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|212716927|ref|ZP_03325055.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
16992]
gi|212660212|gb|EEB20787.1| hypothetical protein BIFCAT_01871 [Bifidobacterium catenulatum DSM
16992]
Length = 243
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKIQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+++T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITTPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|332709119|ref|ZP_08429087.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
gi|332352125|gb|EGJ31697.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
Length = 248
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 68/125 (54%), Gaps = 5/125 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-----FSLLLTDIVMP 57
+++L+ ED++ +R ++ AL + GYEV++ ++GA+A +++ LL+ D+++P
Sbjct: 19 KQVLVVEDEELIREMIVLALQEEGYEVLTASDGATALTMLQDSDHTGYSVDLLILDLMLP 78
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+++G++L R + +M ++ A+ L+KPF +R+L+ L
Sbjct: 79 QVNGLDLCRLLRYRGNPIPIMILSAKASETDRVLGLEVGADDYLTKPFSMRELIARCRAL 138
Query: 118 LTIKN 122
+ ++
Sbjct: 139 IRRQH 143
>gi|329297352|ref|ZP_08254688.1| osmolarity response regulator [Plautia stali symbiont]
Length = 239
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVIDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|288960530|ref|YP_003450870.1| two-component response regulator [Azospirillum sp. B510]
gi|288912838|dbj|BAI74326.1| two-component response regulator [Azospirillum sp. B510]
Length = 249
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD ++R L L K+G+ V + +G + + P L++ D+++P DG
Sbjct: 5 RHLLIVDDDPEIRDMLHDFLVKSGFRVSTAGDGREMARVLAQWPVDLIILDLMLPGEDGT 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + L KPF R+L+ + +L
Sbjct: 65 SLCRSLRAK-SGTPVIMLTAMGSEVDRIVGLEVGADDYLVKPFSARELLARIRAILRR 121
>gi|170760898|ref|YP_001785689.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169407887|gb|ACA56298.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 228
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R F+ L ++V+ G +K R+ +++ DI++P +DG+E
Sbjct: 3 KILIVEDEISIRGFVKVNLKMNNFDVIEAETGEEGIEKARKHKPEVVVLDIMLPGVDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + P++ ++ +T + + KPF+ +L + +L N
Sbjct: 63 VCKTLRQEFPNMGIIMLTAKSQDIDKVSGLEYGADDYIIKPFNPLELTLRIKAILRRVN 121
>gi|317124381|ref|YP_004098493.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315588469|gb|ADU47766.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 225
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GY+V +GA A + ++ L+L D+ +P++D
Sbjct: 1 MT-RVLLAEDDPAISEPLARALRREGYDVDVREDGAEALEGAKDN-PDLVLLDLGLPKVD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T A ++KPF L +L+ V LL
Sbjct: 59 GLEVCRRLRAEGRSIPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118
>gi|332652344|ref|ZP_08418089.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
gi|332517490|gb|EGJ47093.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
Length = 224
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+AEDD D+R L L G+ V+ +NGA A D R + + + DI+MP+++
Sbjct: 1 MNPLILIAEDDADIRGLLKLYLEGEGFRVLEADNGARALDLARAQAPDMAILDIMMPQLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D+ ++ ++ + ++KPF+ ++V V L
Sbjct: 61 GFELTRALRK-FSDIPILILSAKSQDNDKILGLNLGADDYITKPFNPVEIVARVKAQLRR 119
>gi|255505410|ref|ZP_05345906.3| regulatory protein VanR [Bryantella formatexigens DSM 14469]
gi|255268308|gb|EET61513.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
Length = 245
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ ++ + L ++V + A A + +E L + D+++PE D
Sbjct: 15 MSENILIVDDEREIADLVELYLKNENFQVYKYYSAADALRCIEKEKLDLAILDVMLPETD 74
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E + V+ +T ++KPF +LV V L
Sbjct: 75 GFQICRKIREKY-NYPVIMLTAKGEEVDKITGLTLGADDYITKPFLPLELVARVKAQLRR 133
>gi|168178984|ref|ZP_02613648.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|168182022|ref|ZP_02616686.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226950786|ref|YP_002805877.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|237796792|ref|YP_002864344.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182670193|gb|EDT82169.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182674867|gb|EDT86828.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|226841224|gb|ACO83890.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|229263365|gb|ACQ54398.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 230
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + FL L K GYEV NG A DK+R E F+L+L DI+MP++D
Sbjct: 1 MSYKILIVDDDKTIVEFLQIFLIKEGYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + +L ++ ++F+T + ++KPF L +L V+ +L
Sbjct: 61 GFGAIKGIKKLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119
>gi|186475237|ref|YP_001856707.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184191696|gb|ACC69661.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 220
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G SA + +P+ L+L D+ +P+ DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVQDGESALNAADGQPYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRTLRTRGHQLPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|330996298|ref|ZP_08320183.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
YIT 11841]
gi|329573490|gb|EGG55097.1| transcriptional activator protein IrlR [Paraprevotella xylaniphila
YIT 11841]
Length = 230
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ ++ F+ + L + G+EV ++G +A+ ++E F LL+ D++MP+MDG+E
Sbjct: 8 KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQEGVFDLLVLDVIMPKMDGLE 67
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T L KPF ++L + LL
Sbjct: 68 VCRQFRLKEGYHTPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 125
>gi|282899667|ref|ZP_06307631.1| Multi-component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281195546|gb|EFA70479.1| Multi-component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
Length = 1317
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ + L L + Y V N+G +A+D V + L+L DIV+P++DGI
Sbjct: 2 KILVVEDDELIAYTLTNFLTEQNYAVELANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + ++ +TG + + KP +LV V LL
Sbjct: 62 LCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ +DD L L G E+++ N+ ++ + +L+ DI MP M
Sbjct: 371 MNKTKILVVDDDLKTLELLQVLLTPWGLEIITLNHPGKFWETWEKIQPDMLILDIEMPTM 430
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIEL + D ++ ++F+T + V + + +SKP + +L N +
Sbjct: 431 SGIELCKMIRSHDQGREVPILFLTVHSNVEIVNQVFSVGADDFVSKPIIISELFNRILNR 490
Query: 118 LTI 120
L
Sbjct: 491 LER 493
Score = 90.2 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 8/121 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD R+ L L + GY V++ +G A + + ++L D+VMP M+G E
Sbjct: 1064 VLVCDDDPITRQELENLLLQGGYRVLTVASGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1123
Query: 65 ARRATE--LDPDLKVMFITGFAAVA----LNPDSNAPKN--AKVLSKPFHLRDLVNEVNR 116
+ D+ ++ + + + DSN+ A LSKP DL N + +
Sbjct: 1124 MAGLKKCSDTRDIPIVICSVYKSSQNNSNYQQDSNSEGVKFADWLSKPVEETDLFNSLRK 1183
Query: 117 L 117
+
Sbjct: 1184 V 1184
Score = 63.6 bits (155), Expect = 8e-09, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD D+ L G+ E G A ++ LL+ D+++PE DG
Sbjct: 1193 KILIIEDDHDLADLLATLFGRHEIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1252
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRLLTI 120
+ + D + V+ + + + +K ++ V LL
Sbjct: 1253 VVDWLKQHDQLFSVPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTTQEFEQRVMDLLQR 1312
>gi|75908165|ref|YP_322461.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75701890|gb|ABA21566.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 238
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ + + +L K G+ + +G +A +E+P L++ D+++P +DG+E+
Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D ++ +T + + KPF R+LV V LL
Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120
>gi|308068364|ref|YP_003869969.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
gi|305857643|gb|ADM69431.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
Length = 243
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ ED+ + R L L + G+EV + ++G++ ++K E + L+L D+++P M+
Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFEKASRESYDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T A ++KPF + +L+ V +L
Sbjct: 61 GLDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRR 120
>gi|293572888|ref|ZP_06683838.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
gi|291607016|gb|EFF36388.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E980]
Length = 222
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 1 MN-RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLETTRIELIITDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|317132922|ref|YP_004092236.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315470901|gb|ADU27505.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 236
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPE 58
M + IL+ ED+ +R F+I L +AGYEV+ G +A + L DI++P
Sbjct: 1 MTKTILVVEDEQAIREFVIINLKRAGYEVLEAGTGEAALKLYESHGNEIRIALLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R + L ++ +T ++KPF +LV V+ L
Sbjct: 61 IDGFAVCRELRQKSKTLGIIMLTARTQEMDKVGGLMIGADDYVTKPFSPSELVARVDALY 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254882381|ref|ZP_05255091.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254835174|gb|EET15483.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1344
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G + + +++++DI+MP MDGIEL
Sbjct: 1094 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1211
>gi|319949856|ref|ZP_08023868.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
gi|319436481|gb|EFV91589.1| DNA-binding response regulator MtrA [Dietzia cinnamea P4]
Length = 226
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+E +G A + R L+L D+++P
Sbjct: 1 MTPKILVVDDDAALAEMLTIVLRGEGFETEIVGDGVQAIETFRAVQPDLVLLDLMLPGKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + ++ +T + KPF ++LV + L
Sbjct: 61 GIDVCREIRAE-SRVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARIRARLRR 119
>gi|294635418|ref|ZP_06713908.1| phosphate regulon transcriptional regulatory protein PhoB
[Edwardsiella tarda ATCC 23685]
gi|291091207|gb|EFE23768.1| phosphate regulon transcriptional regulatory protein PhoB
[Edwardsiella tarda ATCC 23685]
Length = 237
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ + + A ++ E L+L D ++P
Sbjct: 9 MARRILVVEDETPIREMVSFVLEQNGYQPLEAESYDGALSRLCEPYPDLILLDWMLPGGS 68
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L + D+ VM +T + KPF ++LV + ++
Sbjct: 69 GIQLIKHLKREPATRDIPVMMLTARGEEEDRVRGLEVGADDYIIKPFSPKELVARIKAVM 128
Query: 119 TI 120
Sbjct: 129 RR 130
>gi|282896786|ref|ZP_06304792.1| manR (Two component Transcriptional regulator, Winged helix family)
[Raphidiopsis brookii D9]
gi|281198195|gb|EFA73085.1| manR (Two component Transcriptional regulator, Winged helix family)
[Raphidiopsis brookii D9]
Length = 236
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L + L + GY V NG S + + + LL+ D ++PE G+E
Sbjct: 2 KILLVDDEVELTDPLGRILTREGYIVDITYNGKSGSELAQTRTYDLLILDWMLPEKTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ V+F+T + L KPF LR+L+ V LL +
Sbjct: 62 ICQELRRQGKNIPVLFLTAKDTLDDRVQGLDAGGDDYLVKPFELRELLARVRALLRRSS 120
>gi|262039153|ref|ZP_06012473.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
F0264]
gi|261746769|gb|EEY34288.1| transcriptional activator protein CopR [Leptotrichia goodfellowii
F0264]
Length = 243
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ ED+ + ++K L + Y V SC +G A D + + ++ DI++P+ DG
Sbjct: 16 KMRILVVEDEKKINDVIVKILKQEKYGVDSCYDGQEALDYIFSVDYDAVILDIMLPKKDG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ ++ E + V+F+T V L KPF +L+ V LL
Sbjct: 76 FEVLKKIREKNIKTPVLFLTARDRVEDRVKGLDYGADDYLIKPFAFEELLARVRVLLRKS 135
Query: 122 N 122
+
Sbjct: 136 S 136
>gi|304319971|ref|YP_003853614.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
gi|303298874|gb|ADM08473.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
Length = 238
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ +R L L Y+++ +G A + R L+L DI+MP
Sbjct: 1 MSGEKILIVDDEASIREPLADYLAGHHYDILRAKDGLEAREVCRTAQPDLVLLDIMMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L R V+ +T A ++KPF+ R+LV + +L
Sbjct: 61 DGLSLLREWQATG-GPPVILLTAMADDTDRIVGLELGADDYVTKPFNPRELVARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|320451218|ref|YP_004203314.1| response regulator [Thermus scotoductus SA-01]
gi|320151387|gb|ADW22765.1| response regulator [Thermus scotoductus SA-01]
Length = 224
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ RF+ L GY +G + + RE +L++ D+++P MDGIE+
Sbjct: 6 ILIVEDEKDIARFIELELQAEGYRTEVAYDGITGLSRFREVNPNLVILDLMLPVMDGIEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+R + ++ ++ +T + + L KPF + +L+ V L
Sbjct: 66 AKRIRK-TSNVPILILTAKDRIEDKVEGLDAGADDYLVKPFSIEELLARVRAHLRR 120
>gi|229150108|ref|ZP_04278331.1| Two-component response regulator vanR [Bacillus cereus m1550]
gi|228633407|gb|EEK90013.1| Two-component response regulator vanR [Bacillus cereus m1550]
Length = 243
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|226329135|ref|ZP_03804653.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
gi|225202321|gb|EEG84675.1| hypothetical protein PROPEN_03038 [Proteus penneri ATCC 35198]
Length = 229
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + + SA + + L+L D ++P
Sbjct: 1 MARRILVVEDETAIREMICFVLEQNGFQPIEAEDYDSALSFLIDPYPDLVLLDWMIPGGS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ ++ D+ ++ +T + KPF ++LV V +L
Sbjct: 61 GLQIIKQMKRESNTRDIPIIMLTAKGEEEDKVQGLETGADDYVIKPFSPKELVARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|196042864|ref|ZP_03110103.1| regulatory protein VanR [Bacillus cereus 03BB108]
gi|225865207|ref|YP_002750585.1| regulatory protein VanR [Bacillus cereus 03BB102]
gi|229185478|ref|ZP_04312659.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
gi|196026348|gb|EDX65016.1| regulatory protein VanR [Bacillus cereus 03BB108]
gi|225787874|gb|ACO28091.1| regulatory protein VanR [Bacillus cereus 03BB102]
gi|228597988|gb|EEK55627.1| hypothetical protein bcere0004_30300 [Bacillus cereus BGSC 6E1]
Length = 231
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ E ++ +T ++KPF +L+ V L
Sbjct: 61 GLTICQKIREKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|167590482|ref|ZP_02382870.1| two component transcriptional regulator, winged helix family
protein [Burkholderia ubonensis Bu]
Length = 277
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 42 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 101
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 102 EICRRARGMQRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 159
>gi|189424441|ref|YP_001951618.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
gi|189420700|gb|ACD95098.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
Length = 462
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 62/121 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D++ +R L L GY+V+ NGA A D +REE L+L DI MP MD
Sbjct: 1 MSKLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + L PDL V+ ++G + + + KPF L ++ + L
Sbjct: 61 GIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFSLDKVLITIANALNF 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|295836986|ref|ZP_06823919.1| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
gi|295826313|gb|EDY44378.2| DNA-binding response regulator RegX3 [Streptomyces sp. SPB74]
Length = 260
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MD
Sbjct: 36 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGTQGAIDLVVLDLGLPGMD 94
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154
>gi|223984150|ref|ZP_03634301.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
12042]
gi|223963882|gb|EEF68243.1| hypothetical protein HOLDEFILI_01594 [Holdemania filiformis DSM
12042]
Length = 231
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD ++ + L GYE+ NG A + + ++ +L D++MP+MDG
Sbjct: 3 NYKILVVDDDHEIADAIEIYLKSEGYEIFKAYNGLEALEILNQQKIHCILMDVMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I+ E ++ ++ ++ + ++KPF+ +++ V L
Sbjct: 63 IQAIMHIRE-TSNIPIIILSAKSEDMDKVLGLNIGADDYITKPFNPLEMIARVKSQLRR 120
>gi|126699228|ref|YP_001088125.1| two-component response regulator [Clostridium difficile 630]
gi|255100752|ref|ZP_05329729.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255306636|ref|ZP_05350807.1| two-component response regulator [Clostridium difficile ATCC 43255]
gi|115250665|emb|CAJ68489.1| Two-component response regulator [Clostridium difficile]
Length = 233
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ ++ + L G+ V G A + + + + + DI++P++D
Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFHICQKIREKYYY-PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|91785081|ref|YP_560287.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91689035|gb|ABE32235.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
Length = 220
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G SA +P+ L+L D+ +P DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|159902689|ref|YP_001550033.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
gi|159887865|gb|ABX08079.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
Length = 248
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ +RR L L GY+VV+ +NG A +K R L++ D++MP++DG +
Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTASNGNEALEKFRNLEPDLVVLDVMMPKLDGYGV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T VA + KPF ++L + +L
Sbjct: 71 IQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVIKPFSPKELEARIRCVLRR 125
>gi|150017260|ref|YP_001309514.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903725|gb|ABR34558.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 223
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ +R L L K + V +NG + L+L DI+MP MD
Sbjct: 1 MRKSILIVEDELRIRFLLRDYLIKEDFNVFEASNGEEGLFVFSTQKIDLVLLDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + E+ + V+ +T ++KPF + L+ +V LL
Sbjct: 61 GLTMLEKLREV-STVPVVLLTAKGEEEDKLQGYDYGADDYITKPFSPKVLIAKVKALLKR 119
>gi|298241430|ref|ZP_06965237.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554484|gb|EFH88348.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 234
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D+ ++ R L ++L GYEV S ++G A ++V L+L D+ +P
Sbjct: 1 MHKSGARILVVDDEIEIVRALQRSLTAYGYEVFSASSGEEALEEVVRHRPDLILLDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G+E+ R+ E +L ++ ++ + +SKPF L +++ V
Sbjct: 61 GISGLEVCRKVREQ-SNLPIIVLSVKDTERDKVQALDLGADDYVSKPFGLNEVLARVRVA 119
Query: 118 LT 119
L
Sbjct: 120 LR 121
>gi|296454605|ref|YP_003661748.1| winged helix family two component transcriptional regulator
[Bifidobacterium longum subsp. longum JDM301]
gi|296184036|gb|ADH00918.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. longum JDM301]
Length = 258
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 16 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML 75
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+F+T ++KPF L ++V +
Sbjct: 76 PDIDGFTVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 135
Query: 117 LLTI 120
+L
Sbjct: 136 ILRR 139
>gi|283455696|ref|YP_003360260.1| two-component response regulator [Bifidobacterium dentium Bd1]
gi|306823278|ref|ZP_07456654.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|309801893|ref|ZP_07696008.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bifidobacterium dentium JCVIHMP022]
gi|283102330|gb|ADB09436.1| Two-component response regulator [Bifidobacterium dentium Bd1]
gi|304553910|gb|EFM41821.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|308221449|gb|EFO77746.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bifidobacterium dentium JCVIHMP022]
Length = 248
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 6 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKTQPDLIVLDVML 65
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+++T ++KPF L ++V +
Sbjct: 66 PDIDGFTVTRRIRQEGIATPVLYLTARDDTQDKVMGLTVGGDDYVTKPFSLEEVVARIRA 125
Query: 117 LLTI 120
+L
Sbjct: 126 ILRR 129
>gi|262067099|ref|ZP_06026711.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
ATCC 33693]
gi|291379153|gb|EFE86671.1| transcriptional activator protein Irlr [Fusobacterium periodonticum
ATCC 33693]
Length = 224
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ + K L K + V S NG A + + + L++ DI++P+++G E
Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLEYGTYDLIVLDIMLPKLNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E + V+ +T ++ L KPF +L+ + L+ K
Sbjct: 62 VVKKLRENKNETAVLMLTARDSIDDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119
>gi|228908282|ref|ZP_04072127.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
gi|228939674|ref|ZP_04102256.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228965493|ref|ZP_04126579.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228972536|ref|ZP_04133142.1| Sensor histidine kinase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979144|ref|ZP_04139489.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
gi|228780577|gb|EEM28799.1| Sensor histidine kinase [Bacillus thuringiensis Bt407]
gi|228787173|gb|EEM35146.1| Sensor histidine kinase [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228794223|gb|EEM41741.1| Sensor histidine kinase [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228820012|gb|EEM66055.1| Sensor histidine kinase [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228851323|gb|EEM96132.1| Sensor histidine kinase [Bacillus thuringiensis IBL 200]
gi|326940268|gb|AEA16164.1| two-component response regulator vanR [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 231
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A KV L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|225628912|ref|ZP_03786946.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
gi|260167230|ref|ZP_05754041.1| Probable transcriptional regulator ycf27 [Brucella sp. F5/99]
gi|261756634|ref|ZP_06000343.1| response regulator receiver [Brucella sp. F5/99]
gi|225616758|gb|EEH13806.1| Probable transcriptional regulator ycf27 [Brucella ceti str. Cudo]
gi|261736618|gb|EEY24614.1| response regulator receiver [Brucella sp. F5/99]
Length = 238
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLNRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|206970599|ref|ZP_03231551.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228952360|ref|ZP_04114448.1| DNA-binding response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228964973|ref|ZP_04126075.1| DNA-binding response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229043749|ref|ZP_04191451.1| DNA-binding response regulator [Bacillus cereus AH676]
gi|229069533|ref|ZP_04202822.1| DNA-binding response regulator [Bacillus cereus F65185]
gi|229079163|ref|ZP_04211712.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
gi|229109448|ref|ZP_04239042.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
gi|229178389|ref|ZP_04305758.1| DNA-binding response regulator [Bacillus cereus 172560W]
gi|229190087|ref|ZP_04317093.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
gi|206734235|gb|EDZ51405.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228593416|gb|EEK51229.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
gi|228605119|gb|EEK62571.1| DNA-binding response regulator [Bacillus cereus 172560W]
gi|228674015|gb|EEL29265.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
gi|228704180|gb|EEL56617.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
gi|228713672|gb|EEL65558.1| DNA-binding response regulator [Bacillus cereus F65185]
gi|228725602|gb|EEL76857.1| DNA-binding response regulator [Bacillus cereus AH676]
gi|228794714|gb|EEM42218.1| DNA-binding response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228807356|gb|EEM53887.1| DNA-binding response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 228
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|58337917|ref|YP_194502.1| response regulator [Lactobacillus acidophilus NCFM]
gi|227902916|ref|ZP_04020721.1| response regulator [Lactobacillus acidophilus ATCC 4796]
gi|58255234|gb|AAV43471.1| response regulator [Lactobacillus acidophilus NCFM]
gi|227869332|gb|EEJ76753.1| response regulator [Lactobacillus acidophilus ATCC 4796]
Length = 233
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ L GY+V+ +G A + ++E +L+L D ++P DGI
Sbjct: 7 KILLVEDEEAVASFVKTELEFEGYQVIWAQDGKEALELFQKEKPTLILLDWMLPVYDGIT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ +T + + + ++KPF + +L + +L
Sbjct: 67 VLRRIRKK-SEVPIIMLTAKNSTSDISSALDQGLDDYITKPFEIEELFARIRVILRR 122
>gi|56696508|ref|YP_166865.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
gi|56678245|gb|AAV94911.1| DNA-binding response regulator [Ruegeria pomeroyi DSS-3]
Length = 226
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ EDD + R FL K + G+ V +G + F ++ D ++P +D
Sbjct: 1 MSRRVLIVEDDAETREFLAKGFAEEGFAVECAGDGREGLYHATDGGFDAMVLDRMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + + V+ +T +AV L KPF ++L+ V LL
Sbjct: 61 GLALIKSVRAAGLNTPVIMLTAMSAVDERVKGLRAGADDYLVKPFSFQELLARVEALLRR 120
>gi|30262227|ref|NP_844604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47527505|ref|YP_018854.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49185067|ref|YP_028319.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65319516|ref|ZP_00392475.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165872233|ref|ZP_02216871.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167632884|ref|ZP_02391210.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167641072|ref|ZP_02399328.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170686369|ref|ZP_02877590.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170708398|ref|ZP_02898841.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177650825|ref|ZP_02933722.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190567848|ref|ZP_03020759.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196033952|ref|ZP_03101363.1| DNA-binding response regulator [Bacillus cereus W]
gi|196039761|ref|ZP_03107065.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196046933|ref|ZP_03114154.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|218903356|ref|YP_002451190.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227814973|ref|YP_002814982.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228927282|ref|ZP_04090343.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228945834|ref|ZP_04108178.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229121769|ref|ZP_04250990.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
95/8201]
gi|229601295|ref|YP_002866569.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254684793|ref|ZP_05148653.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254722202|ref|ZP_05183990.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254737239|ref|ZP_05194943.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254743574|ref|ZP_05201259.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254751556|ref|ZP_05203593.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254759070|ref|ZP_05211097.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|300118053|ref|ZP_07055801.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|301053744|ref|YP_003791955.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|30256858|gb|AAP26090.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47502653|gb|AAT31329.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178994|gb|AAT54370.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164712026|gb|EDR17565.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167510970|gb|EDR86360.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167531696|gb|EDR94361.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170126637|gb|EDS95521.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170669445|gb|EDT20187.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172083286|gb|EDT68347.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190560903|gb|EDV14877.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195993632|gb|EDX57589.1| DNA-binding response regulator [Bacillus cereus W]
gi|196022308|gb|EDX60994.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196029464|gb|EDX68067.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218538518|gb|ACK90916.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227003622|gb|ACP13365.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228661685|gb|EEL17304.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
95/8201]
gi|228813816|gb|EEM60093.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228832358|gb|EEM77934.1| Uncharacterized sensory transduction protein ykoG [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|229265703|gb|ACQ47340.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|298724364|gb|EFI65058.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|300375913|gb|ADK04817.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 227
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|295090875|emb|CBK76982.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 223
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL AED+ +R +K L G+ V C +G D + + +++ DI+MP +DG+
Sbjct: 2 RILFAEDEPALREVTVKRLKAEGFGVDGCRDGREVLDYLDSTDYDVVILDIMMPGIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + VM +T AVA L+KPF +L + LL
Sbjct: 62 VLRTLRSRGNTVPVMLLTARDAVADRVGGLDAGADDYLTKPFEFAELTARIRALLRR 118
>gi|169828289|ref|YP_001698447.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
gi|168992777|gb|ACA40317.1| response regulator ArlR [Lysinibacillus sphaericus C3-41]
Length = 247
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + RF+ L GY+V G + F +LL D+++P ++GI
Sbjct: 25 KKILLVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATTDAFDVLLLDVMLPGINGI 84
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + ++ IT AV + KPF + +L+ + +L
Sbjct: 85 EICRRIRTQ-SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141
>gi|94266053|ref|ZP_01289772.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93453375|gb|EAT03803.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 240
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ EDD+++++ + L KAG++VV ++G A V E L+L D+++P +DG
Sbjct: 10 KPTILVVEDDENIQQLVGYNLVKAGFQVVYADHGEQALALVFRENPDLVLLDLMLPGLDG 69
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + L ++ +T ++KPF + LV V L
Sbjct: 70 GEVCKALRRDPRSRHLPIVMLTARGDEDEISAGLDLGADDYITKPFSPKILVARVKAALR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|84496310|ref|ZP_00995164.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
gi|84383078|gb|EAP98959.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
Length = 238
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + R L L YEV + +G SA V ++ L++ D+ +P++D
Sbjct: 3 MS-RILVVDDEPHLVRTLAINLRARDYEVETAGDGRSALQAVHDQLPDLVILDLGLPDID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ RR E V+ ++ A ++ ++KPF + +L+ + L
Sbjct: 62 GVDVLRRIRE-TSQTPVIVLSARADSIDKVEALDLGADDYVTKPFAVDELLARIRVALRR 120
>gi|296112407|ref|YP_003626345.1| two-component system response regulator [Moraxella catarrhalis RH4]
gi|295920101|gb|ADG60452.1| two-component system response regulator [Moraxella catarrhalis RH4]
gi|326560837|gb|EGE11203.1| two-component system response regulator [Moraxella catarrhalis
46P47B1]
gi|326561915|gb|EGE12250.1| two-component system response regulator [Moraxella catarrhalis
7169]
gi|326563058|gb|EGE13332.1| two-component system response regulator [Moraxella catarrhalis
103P14B1]
gi|326569554|gb|EGE19608.1| two-component system response regulator [Moraxella catarrhalis BC8]
gi|326570341|gb|EGE20385.1| two-component system response regulator [Moraxella catarrhalis BC1]
gi|326572378|gb|EGE22371.1| two-component system response regulator [Moraxella catarrhalis BC7]
gi|326573651|gb|EGE23610.1| two-component system response regulator [Moraxella catarrhalis
CO72]
gi|326577274|gb|EGE27162.1| two-component system response regulator [Moraxella catarrhalis
101P30B1]
gi|326578036|gb|EGE27900.1| two-component system response regulator [Moraxella catarrhalis
O35E]
Length = 240
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
MN++ILL EDD D+ + L YEV G D + +E SL++ D+++P+
Sbjct: 1 MNKQILLIEDDPDLAELISDYLSMNYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60
Query: 59 MDGIELARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+E+ ++ + ++ +T ++KPF R+L+ +
Sbjct: 61 MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120
Query: 115 NRLLTI 120
+L
Sbjct: 121 RAVLRR 126
>gi|296103156|ref|YP_003613302.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057615|gb|ADF62353.1| hypothetical protein ECL_02812 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 719
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD D+ L L GY + +G +A + ++P+ ++ D+++P +D
Sbjct: 1 MKQ-ILLVEDDHDIAALLRLNLEDEGYIITHEPDGGNALQCLEKQPWDAVILDLMLPNVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L
Sbjct: 60 GLEICRRIRQITRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|307153462|ref|YP_003888846.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
gi|306983690|gb|ADN15571.1| multi-sensor hybrid histidine kinase [Cyanothece sp. PCC 7822]
Length = 645
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L+ L AG++VV +G SA + V P L+L DI+MP +DG E
Sbjct: 10 ILIVDDTPTNLEMLLDILEDAGFKVVVAEDGESAIEMVEYAPPDLILLDILMPRLDGFET 69
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR D+ ++F+T ++KPF +++ +N L ++N
Sbjct: 70 CRRLKSNPKTADIPIIFMTALIDNVEKLKGLNLGAVDYVTKPFEHEEVLARINIHLRLQN 129
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGIE 63
LL +D+ +R L Y+V++ NNG A + E SL+L DI+MP M G
Sbjct: 523 LLVDDEAGIRETTKILLENYNYQVLTANNGIEAIELYAQYEHKVSLVLMDIMMPAMGGDT 582
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R +++P++K++ I+G + K L KP+ ++L++ ++ +L+
Sbjct: 583 AIRTLQKMNPEVKIIGISGLISSEKLSQEMKMKTQAFLPKPYTAQELLHTIDLILS 638
>gi|170077473|ref|YP_001734111.1| two-component response regulator, OmpR subfamily protein
[Synechococcus sp. PCC 7002]
gi|190358881|sp|P32040|Y851_SYNP2 RecName: Full=Probable transcriptional regulatory protein
SYNPCC7002_A0851
gi|169885142|gb|ACA98855.1| two-component response regulator, OmpR subfamily protein
[Synechococcus sp. PCC 7002]
Length = 251
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDI 54
+IL+ ED+ +R ++ L + GYEV +NG + + ++ + P L++ DI
Sbjct: 18 KARILVVEDEAVIRDMIVMGLEEEGYEVFFADNGRTGLNMLQNPEFNAPDMPLDLVILDI 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++PE++G++L R + ++ ++ A+ L+KPF LR+LV
Sbjct: 78 MLPEVNGLDLCRFLRYQGNTIPILVLSAKASETDRVLGLEVGADDYLTKPFSLRELVARC 137
Query: 115 NRLLTIK 121
LL +
Sbjct: 138 RALLRRQ 144
>gi|88797266|ref|ZP_01112856.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
gi|88780135|gb|EAR11320.1| Transcriptional regulatory protein CpxR [Reinekea sp. MED297]
Length = 233
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ILL +DD D+ L + L GY + + ++G ++++ + L+L D++MP +
Sbjct: 1 MSTHSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E +R E + V+ +T L+KP+ R+L+ + LL
Sbjct: 61 DGFETLKRIRESSI-VPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|325479309|gb|EGC82405.1| putative transcriptional regulatory protein OmpR [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 232
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D+D +R+F+ L GY+ V +G A E ++ + DI++P + G
Sbjct: 3 NNKILIVDDEDPIRQFMKINLDYQGYQTVEAASGEEAIKVFEAEKPAVAILDIMLPGISG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R ++ P ++ ++ + + KPF+ ++L+ + L+
Sbjct: 63 YEVCERIRDISPMTGIIMVSAKSQDIDKILGLEKGADDYIIKPFNPQELILRIRSLMRRV 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|163939801|ref|YP_001644685.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229132829|ref|ZP_04261674.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
gi|163861998|gb|ABY43057.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228650656|gb|EEL06646.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
Length = 225
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +R + L + G++ +G A K+ E + + DI+MP MD
Sbjct: 1 MIPKILIVDDDPHIRELVSVFLEREGFQTYEAVDGLDALRKIEEVKVEMAIIDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDLCYELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPLELVVRVKALLKR 119
>gi|113476924|ref|YP_722985.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167972|gb|ABG52512.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1207
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63
IL+ +D+ L L Y+V+ NNG A D + ++ L+L D++MP M G E
Sbjct: 741 ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLPDLILLDVMMPGMTGYE 800
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E L ++ +T V+ LSKPFH ++L+ + + IK
Sbjct: 801 VTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHINIK 860
>gi|295108248|emb|CBL22201.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 224
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D+ D+ L + K GY V + NG A + + + ++L DI MP+M+
Sbjct: 1 MAQSILIVDDEKDIVSMLNQYFYKIGYVVYTAINGKEALNAITKN-PDIILLDINMPDMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++F+T A + KPF + +L V L
Sbjct: 60 GFTVCEAIRN-YVSCPIIFLTARVEDCDKIKGFAIGADDYVVKPFSIDELEARVAAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|260770795|ref|ZP_05879724.1| two-component system response regulator OmpR [Vibrio furnissii CIP
102972]
gi|260614032|gb|EEX39222.1| two-component system response regulator OmpR [Vibrio furnissii CIP
102972]
Length = 240
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDPLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNAIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|239815964|ref|YP_002944874.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
gi|239802541|gb|ACS19608.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
Length = 242
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GY + +G + ++ + L+ D+++P +DG+
Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHTGLRELERGHWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|169247751|gb|ACA51690.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 271
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +G++A RE ++ D+++P+MDG+
Sbjct: 45 RLLVVDDEAPLAELLSMALRYEGWEVRSAGDGSTAVRTAREFRPDAVVLDVMLPDMDGLT 104
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 105 VLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVVRLRGLLRR 161
>gi|118578946|ref|YP_900196.1| two component transcriptional regulator [Pelobacter propionicus DSM
2379]
gi|118501656|gb|ABK98138.1| two component transcriptional regulator, winged helix family
[Pelobacter propionicus DSM 2379]
Length = 236
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MN+ I+L ED+ + R + L + G + G A + ++ E F L++ D++
Sbjct: 1 MNRDTEKPHIMLVEDEIHLARGICFNLEEDGCRISHFATGEKALEALQFEHFDLIILDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P MDG ++ + +D + ++ +T + + L+KPF+L + + V
Sbjct: 61 LPGMDGFQVCQSVRRMDGRVPILMLTARSEESDRVHGLETGADDYLTKPFNLVEFLLRVK 120
Query: 116 RLLTIKN 122
+L +
Sbjct: 121 GMLRRSS 127
>gi|30262004|ref|NP_844381.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47527270|ref|YP_018619.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184844|ref|YP_028096.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65319288|ref|ZP_00392247.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165870159|ref|ZP_02214815.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167638255|ref|ZP_02396532.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170686370|ref|ZP_02877591.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170705941|ref|ZP_02896403.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177650880|ref|ZP_02933777.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190566407|ref|ZP_03019325.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196036950|ref|ZP_03104329.1| DNA-binding response regulator [Bacillus cereus W]
gi|218903126|ref|YP_002450960.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227815205|ref|YP_002815214.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|254684569|ref|ZP_05148429.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254721327|ref|ZP_05183117.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254734873|ref|ZP_05192585.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741273|ref|ZP_05198961.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254750824|ref|ZP_05202863.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254760064|ref|ZP_05212088.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30256630|gb|AAP25867.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47502418|gb|AAT31094.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178771|gb|AAT54147.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164714047|gb|EDR19568.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167513556|gb|EDR88925.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170128943|gb|EDS97808.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170669446|gb|EDT20188.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172083341|gb|EDT68402.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190562542|gb|EDV16509.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195990439|gb|EDX54428.1| DNA-binding response regulator [Bacillus cereus W]
gi|218537031|gb|ACK89429.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227005965|gb|ACP15708.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
Length = 229
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|317490823|ref|ZP_07949259.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920370|gb|EFV41693.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 233
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ I L ED+ + LI L G+ V G + + E+ L++ D+ +P+++
Sbjct: 1 MSPTIWLVEDESSIADTLIYTLESEGFTVCWFERGLPVLEMMTEKKPDLVILDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ PDL V+F+T ++KPF R++ V +L
Sbjct: 61 GFELCRKILTQSPDLPVLFLTARNDEVDRLIGLEIGADDYVAKPFSPREVCARVRTILRR 120
>gi|317126455|ref|YP_004100567.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315590543|gb|ADU49840.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 248
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G+EV + G A RE ++ D+++P+ DG+E
Sbjct: 24 RVLVVDDEPNLTELLGMALRYEGWEVRAAATGMQAVRAAREFDPDAVVLDMMLPDFDGLE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR +P++ V+F+T AV ++KPF L ++V V L+
Sbjct: 84 VLRRMRTDNPNVPVLFLTAKDAVEDRVSGLTAGGDDYVTKPFSLEEVVARVRALMRR 140
>gi|257900011|ref|ZP_05679664.1| transcriptional regulator [Enterococcus faecium Com15]
gi|257837923|gb|EEV62997.1| transcriptional regulator [Enterococcus faecium Com15]
Length = 222
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 1 MN-RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|118477412|ref|YP_894563.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|225863917|ref|YP_002749295.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|300117557|ref|ZP_07055344.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|118416637|gb|ABK85056.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|225786611|gb|ACO26828.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|298725092|gb|EFI65747.1| DNA-binding response regulator [Bacillus cereus SJ1]
Length = 254
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|226946855|ref|YP_002801928.1| phosphate regulon response regulator PhoB [Azotobacter vinelandii
DJ]
gi|226721782|gb|ACO80953.1| phosphate regulon response regulator; PhoB [Azotobacter vinelandii
DJ]
Length = 229
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R + AL AGYE + N A+ + + L+L D ++P GI
Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAIIVDRRPDLILLDWMLPGTSGI 63
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR EL + ++ +T ++KPF R+LV + +L
Sbjct: 64 ELARRLKRDELTTGIPLIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|296329647|ref|ZP_06872132.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305674044|ref|YP_003865716.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153145|gb|EFG94009.1| two-component response regulator (YkoH) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305412288|gb|ADM37407.1| two-component response regulator (paired with YkoH) [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 228
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ ED++ + R L L GY V NG + E +SL+L D+++P +
Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYNVTIKYNGTEGLNAAAEGRYSLVLLDVMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + D V+ +T ++ ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRLRKTDQQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRVALR 120
>gi|295132835|ref|YP_003583511.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
gi|294980850|gb|ADF51315.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
Length = 237
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KILL EDD + F+ K L + G+EV NG Y F LL+ DI++PEM+G
Sbjct: 5 NAKILLVEDDAKVCAFINKGLTEEGFEVSIALNGKEGYQMASANKFDLLILDIMLPEMNG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI- 120
+E+ + E + + ++F+T + L+KPF +L+ V LL
Sbjct: 65 LEICKAVREENTHVPILFLTALGSSENIAMGLNSGADDYLAKPFKFIELIARVKSLLRRS 124
Query: 121 KN 122
+N
Sbjct: 125 RN 126
>gi|254429359|ref|ZP_05043066.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
gi|196195528|gb|EDX90487.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
Length = 236
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ KIL+ +DD +R L + L +AGY V + + + E +SL++ D+++P
Sbjct: 1 MSEQQDKILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR E + + ++ +T A + L KPF+ ++L + +
Sbjct: 61 GEDGLSICRRLREAENVMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|153811670|ref|ZP_01964338.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
gi|149832411|gb|EDM87496.1| hypothetical protein RUMOBE_02062 [Ruminococcus obeum ATCC 29174]
Length = 225
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++ + R + + L GYE +C +G + E + L+L D+ +P +DG++
Sbjct: 2 HILIIEDEEQLCRSIAEGLRMDGYETDTCLDGDEGLELCTTENYDLILLDLNLPGIDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E + V+ ++ + + L+KPFH +L + L +
Sbjct: 62 ILRQFRETNSSTPVLILSARGQIEDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRR 119
>gi|327404314|ref|YP_004345152.1| winged helix family two component transcriptional regulator
[Fluviicola taffensis DSM 16823]
gi|327319822|gb|AEA44314.1| two component transcriptional regulator, winged helix family
[Fluviicola taffensis DSM 16823]
Length = 230
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KILL EDD ++ + L GY+VV C+NG + + E+ F L + D++MP+ DG
Sbjct: 4 KAKILLVEDDTNLGFVISDQLKSEGYQVVLCSNGMEGHMRFSEDEFHLCIFDVMMPKKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ ++ ++ ++F+T A L+KPF +L V LL
Sbjct: 64 FTLAKEIRTMNQEVPIIFLTAKAMTEDKVAGFNAGGDDYLTKPFSFDELSVRVKALLKRV 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|320533787|ref|ZP_08034383.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133992|gb|EFW26344.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 248
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV + G +A +E +++ DI++P+ DG+E
Sbjct: 18 RVLVVDDEQMLADLLASALRYEGWEVTTAGTGIAAVRSAQEIDPDVIVLDIMLPDFDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P++ V+F+T AV ++KPF L ++V + LL
Sbjct: 78 VMRRVRGHLPNVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALLRR 134
>gi|229144519|ref|ZP_04272922.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
gi|228638932|gb|EEK95359.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST24]
Length = 243
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|17989136|ref|NP_541769.1| two component response regulator [Brucella melitensis bv. 1 str.
16M]
gi|23500221|ref|NP_699661.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
gi|62317658|ref|YP_223511.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
str. 9-941]
gi|83269641|ref|YP_418932.1| response regulator receiver [Brucella melitensis biovar Abortus
2308]
gi|163844637|ref|YP_001622292.1| hypothetical protein BSUIS_B0474 [Brucella suis ATCC 23445]
gi|189022907|ref|YP_001932648.1| Response regulator receiver [Brucella abortus S19]
gi|225686276|ref|YP_002734248.1| putative transcriptional regulator ycf27 [Brucella melitensis ATCC
23457]
gi|237817205|ref|ZP_04596197.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
2308 A]
gi|254691154|ref|ZP_05154408.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 6
str. 870]
gi|254698937|ref|ZP_05160765.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 2
str. 86/8/59]
gi|254699728|ref|ZP_05161556.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 5 str.
513]
gi|254702863|ref|ZP_05164691.1| Probable transcriptional regulator ycf27 [Brucella suis bv. 3 str.
686]
gi|254706012|ref|ZP_05167840.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
M163/99/10]
gi|254711685|ref|ZP_05173496.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
B2/94]
gi|254732384|ref|ZP_05190962.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 4
str. 292]
gi|256029680|ref|ZP_05443294.1| Probable transcriptional regulator ycf27 [Brucella pinnipedialis
M292/94/1]
gi|256043373|ref|ZP_05446306.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 1
str. Rev.1]
gi|256111617|ref|ZP_05452612.1| Probable transcriptional regulator ycf27 [Brucella melitensis bv. 3
str. Ether]
gi|256157833|ref|ZP_05455751.1| Probable transcriptional regulator ycf27 [Brucella ceti M490/95/1]
gi|256253205|ref|ZP_05458741.1| Probable transcriptional regulator ycf27 [Brucella ceti B1/94]
gi|256256340|ref|ZP_05461876.1| Probable transcriptional regulator ycf27 [Brucella abortus bv. 9
str. C68]
gi|256262586|ref|ZP_05465118.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
gi|260544890|ref|ZP_05820711.1| response regulator receiver [Brucella abortus NCTC 8038]
gi|260564579|ref|ZP_05835064.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
gi|260756755|ref|ZP_05869103.1| two-component system response regulator [Brucella abortus bv. 6
str. 870]
gi|260760185|ref|ZP_05872533.1| two-component system response regulator [Brucella abortus bv. 4
str. 292]
gi|260763423|ref|ZP_05875755.1| two-component system response regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260882570|ref|ZP_05894184.1| two-component system response regulator [Brucella abortus bv. 9
str. C68]
gi|261220313|ref|ZP_05934594.1| two-component system response regulator [Brucella ceti B1/94]
gi|261313453|ref|ZP_05952650.1| two-component system response regulator [Brucella pinnipedialis
M163/99/10]
gi|261319310|ref|ZP_05958507.1| two-component system response regulator [Brucella pinnipedialis
B2/94]
gi|261750193|ref|ZP_05993902.1| two-component system response regulator [Brucella suis bv. 5 str.
513]
gi|261753466|ref|ZP_05997175.1| two-component system response regulator [Brucella suis bv. 3 str.
686]
gi|265986690|ref|ZP_06099247.1| two-component system response regulator [Brucella pinnipedialis
M292/94/1]
gi|265989794|ref|ZP_06102351.1| two-component system response regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|265993097|ref|ZP_06105654.1| two-component system response regulator [Brucella melitensis bv. 3
str. Ether]
gi|265996340|ref|ZP_06108897.1| two-component system response regulator [Brucella ceti M490/95/1]
gi|294853717|ref|ZP_06794389.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
gi|297249702|ref|ZP_06933403.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Brucella abortus bv. 5 str. B3196]
gi|17984986|gb|AAL54033.1| two component response regulator [Brucella melitensis bv. 1 str.
16M]
gi|23463825|gb|AAN33666.1| transcriptional regulatory protein OmpR, putative [Brucella suis
1330]
gi|62197851|gb|AAX76150.1| transcriptional regulatory protein OmpR [Brucella abortus bv. 1
str. 9-941]
gi|82939915|emb|CAJ12928.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal [Brucella melitensis biovar Abortus 2308]
gi|163675360|gb|ABY39470.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
gi|189021481|gb|ACD74202.1| Response regulator receiver [Brucella abortus S19]
gi|225642381|gb|ACO02294.1| Probable transcriptional regulator ycf27 [Brucella melitensis ATCC
23457]
gi|237788018|gb|EEP62234.1| Probable transcriptional regulator ycf27 [Brucella abortus str.
2308 A]
gi|260098161|gb|EEW82035.1| response regulator receiver [Brucella abortus NCTC 8038]
gi|260152222|gb|EEW87315.1| response regulator receiver [Brucella melitensis bv. 1 str. 16M]
gi|260670503|gb|EEX57443.1| two-component system response regulator [Brucella abortus bv. 4
str. 292]
gi|260673844|gb|EEX60665.1| two-component system response regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260676863|gb|EEX63684.1| two-component system response regulator [Brucella abortus bv. 6
str. 870]
gi|260872098|gb|EEX79167.1| two-component system response regulator [Brucella abortus bv. 9
str. C68]
gi|260918897|gb|EEX85550.1| two-component system response regulator [Brucella ceti B1/94]
gi|261298533|gb|EEY02030.1| two-component system response regulator [Brucella pinnipedialis
B2/94]
gi|261302479|gb|EEY05976.1| two-component system response regulator [Brucella pinnipedialis
M163/99/10]
gi|261739946|gb|EEY27872.1| two-component system response regulator [Brucella suis bv. 5 str.
513]
gi|261743219|gb|EEY31145.1| two-component system response regulator [Brucella suis bv. 3 str.
686]
gi|262550637|gb|EEZ06798.1| two-component system response regulator [Brucella ceti M490/95/1]
gi|262763967|gb|EEZ09999.1| two-component system response regulator [Brucella melitensis bv. 3
str. Ether]
gi|263000463|gb|EEZ13153.1| two-component system response regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|263092372|gb|EEZ16625.1| response regulator receiver [Brucella melitensis bv. 2 str. 63/9]
gi|264658887|gb|EEZ29148.1| two-component system response regulator [Brucella pinnipedialis
M292/94/1]
gi|294819372|gb|EFG36372.1| hypothetical protein BAZG_02697 [Brucella sp. NVSL 07-0026]
gi|297173571|gb|EFH32935.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Brucella abortus bv. 5 str. B3196]
gi|326410637|gb|ADZ67701.1| Response regulator receiver [Brucella melitensis M28]
gi|326553929|gb|ADZ88568.1| Response regulator receiver [Brucella melitensis M5-90]
Length = 238
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|323495909|ref|ZP_08100977.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
sinaloensis DSM 21326]
gi|323319125|gb|EGA72068.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
sinaloensis DSM 21326]
Length = 1128
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ R L L GY V + +G A +KV E L+L DI+MP M G ++
Sbjct: 725 LVVDDEPVNLRVLDSFLRLEGYRVSTAKDGHEALEKVAIERPELVLLDIMMPGMSGYQVC 784
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L V+ +T LSKPF+ ++L + LT
Sbjct: 785 ETLRLEYDHSQLPVIMLTALNQADDRVRGFNAGANDYLSKPFNKQELAARILAHLT 840
>gi|260588461|ref|ZP_05854374.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|331082261|ref|ZP_08331388.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541335|gb|EEX21904.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|330403055|gb|EGG82620.1| hypothetical protein HMPREF0992_00312 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 225
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ K+L+ +D+ MR+ + L K GYEV+ +G +A D +++ L++ D++MP+
Sbjct: 1 MDKCKVLVVDDESRMRKLVSDFLTKQGYEVLEAGDGEAALDIFYKDKDIQLIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R + D + ++ +T + +SKPF + LV V +L
Sbjct: 61 LDGWGVCREIRK-DSKIPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|290959872|ref|YP_003491054.1| two-component system reponse regulator [Streptomyces scabiei 87.22]
gi|260649398|emb|CBG72513.1| putative two-component system reponse regulator [Streptomyces
scabiei 87.22]
Length = 241
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 17 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMD 75
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 76 GLEVARRLRAEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 135
>gi|110801928|ref|YP_699744.1| DNA-binding response regulator [Clostridium perfringens SM101]
gi|110682429|gb|ABG85799.1| DNA-binding response regulator [Clostridium perfringens SM101]
Length = 228
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V ++G +A ++ +L++ D+++P +D +E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVAHDGKAAKEEFVNFSPNLVVLDMMLPGIDRME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|90410641|ref|ZP_01218657.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
profundum 3TCK]
gi|90328882|gb|EAS45166.1| hypothetical DNA-binding response regulator OmpR [Photobacterium
profundum 3TCK]
Length = 257
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D ++R L + L + Y V +G +R+ L++ D+++P DG+
Sbjct: 11 HLLIVDDHSEIRDLLKRFLSQHNYRVSVAADGDEMEQCLRDNTIDLIVLDLMLPGKDGLT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ V+ +T L KPF+ R+L+ + ++
Sbjct: 71 LCRELR-VHSNIPVIMLTAMGEEVDKIIGLEMGADDYLPKPFNPRELLARIKAVIRR 126
>gi|296157271|ref|ZP_06840107.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295892607|gb|EFG72389.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 220
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G SA +P+ L+L D+ +P DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGESALSAAASQPYDLVLLDLGLPRRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|254292716|ref|YP_003058739.1| two component transcriptional regulator PhoB, winged helix family
[Hirschia baltica ATCC 49814]
gi|254041247|gb|ACT58042.1| two component transcriptional regulator PhoB, winged helix family
[Hirschia baltica ATCC 49814]
Length = 248
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ + + L L GYEV +G A V E ++L D ++P++ GIE+
Sbjct: 24 LIVEDEEALVQLLQYNLQSEGYEVGVAMDGEMALLMVEERQPDIVLLDWMLPKLSGIEVC 83
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D +L ++ +T A + KPF + +L + ++
Sbjct: 84 RRLRSRDTTGNLPIIMLTARTEEADRIRGLDTGADDYIVKPFSMTELKARIRAVMRR 140
>gi|197287013|ref|YP_002152885.1| DNA-binding transcriptional regulator CpxR [Proteus mirabilis
HI4320]
gi|227354741|ref|ZP_03839159.1| two component system response regulator [Proteus mirabilis ATCC
29906]
gi|194684500|emb|CAR46276.1| two component system response regulator [Proteus mirabilis HI4320]
gi|227165184|gb|EEI50012.1| two component system response regulator [Proteus mirabilis ATCC
29906]
Length = 232
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVLATDGEQALKLLDA-SIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQNF-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSN 119
>gi|145296603|ref|YP_001139424.1| hypothetical protein cgR_2511 [Corynebacterium glutamicum R]
gi|140846523|dbj|BAF55522.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 240
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+ V++ N+G A RE + D++MP MDG E
Sbjct: 15 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+++T AV ++KPF L +++ + +L
Sbjct: 75 LLTKLRSEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 131
>gi|110833129|ref|YP_691988.1| osmolarity response regulator [Alcanivorax borkumensis SK2]
gi|110646240|emb|CAL15716.1| DNA-binding response regulator OmpR [Alcanivorax borkumensis SK2]
Length = 236
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ KIL+ +DD +R L + L +AGY V + + + E +SL++ D+++P
Sbjct: 1 MSEQQDKILVVDDDARLRSLLQRFLEEAGYTVKAVGDAEQMDRALSRELYSLMVLDLMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR E + + ++ +T A + L KPF+ ++L + +
Sbjct: 61 GEDGLSICRRLREAENIMPIIMLTAKGDDAERIEGLDAGADDYLPKPFNPKELDARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|52143545|ref|YP_083284.1| response regulator [Bacillus cereus E33L]
gi|51977014|gb|AAU18564.1| response regulator [Bacillus cereus E33L]
Length = 232
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|163848409|ref|YP_001636453.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222526334|ref|YP_002570805.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163669698|gb|ABY36064.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222450213|gb|ACM54479.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 232
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + L L + GY V+ +G D+ R + L++ DI++P +DG
Sbjct: 3 TVLIVEDETTLAETLRYNLEREGYSVIVAGDGVQGLDRARRDQPDLVVLDIMLPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ ++ +T + KPF L + + V +L
Sbjct: 63 VCRILRQE-SDVPIIMLTARQDEVDRIAGLELGADDYMGKPFSLGEFLARVRAILRR 118
>gi|116625704|ref|YP_827860.1| multi-sensor signal transduction histidine kinase [Candidatus
Solibacter usitatus Ellin6076]
gi|116228866|gb|ABJ87575.1| multi-sensor signal transduction histidine kinase [Candidatus
Solibacter usitatus Ellin6076]
Length = 1134
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILLA+D+ DMR ++ + L Y+V + +G A P L+L+D++MP +DG
Sbjct: 635 ERILLADDNPDMREYVERLLRDR-YDVTAVASGEEALHAAISNPPGLILSDVMMPGLDGF 693
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-- 118
L + E + ++ ++ A + L KPF R+L+ V L
Sbjct: 694 GLLKELRERPETRTIPLILVSARAGEESRVEGLGAGADDYLIKPFTARELLARVGAHLSM 753
Query: 119 --TIKN 122
++
Sbjct: 754 SRRRRD 759
>gi|15924405|ref|NP_371939.1| truncated (putative response regulator) [Staphylococcus aureus
subsp. aureus Mu50]
gi|21283034|ref|NP_646122.1| truncated (putative response regulator ArlR [Staphylococcus aureus
subsp. aureus MW2]
gi|49483605|ref|YP_040829.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486256|ref|YP_043477.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57651916|ref|YP_186303.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus COL]
gi|82751007|ref|YP_416748.1| two-component response regulator [Staphylococcus aureus RF122]
gi|87161474|ref|YP_494005.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88195145|ref|YP_499946.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|148267903|ref|YP_001246846.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150393966|ref|YP_001316641.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|151221540|ref|YP_001332362.1| two-component response regulator [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979734|ref|YP_001441993.1| truncated response regulator [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509580|ref|YP_001575239.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142648|ref|ZP_03567141.1| response regulator [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253315262|ref|ZP_04838475.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
str. CF-Marseille]
gi|253732052|ref|ZP_04866217.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733338|ref|ZP_04867503.1| response regulator protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006204|ref|ZP_05144805.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425479|ref|ZP_05601904.1| response regulator arlR [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428139|ref|ZP_05604537.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257430771|ref|ZP_05607153.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus 68-397]
gi|257433530|ref|ZP_05609888.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus E1410]
gi|257436371|ref|ZP_05612418.1| response regulator protein [Staphylococcus aureus subsp. aureus
M876]
gi|257795530|ref|ZP_05644509.1| response regulator protein [Staphylococcus aureus A9781]
gi|258413338|ref|ZP_05681614.1| response regulator protein [Staphylococcus aureus A9763]
gi|258420555|ref|ZP_05683497.1| two-component system response regulator [Staphylococcus aureus
A9719]
gi|258422552|ref|ZP_05685460.1| two component transcriptional regulator [Staphylococcus aureus
A9635]
gi|258434673|ref|ZP_05688747.1| response regulator protein [Staphylococcus aureus A9299]
gi|258444751|ref|ZP_05693080.1| two-component system response regulator [Staphylococcus aureus
A8115]
gi|258447414|ref|ZP_05695558.1| two-component system response regulator [Staphylococcus aureus
A6300]
gi|258449255|ref|ZP_05697358.1| two-component system response regulator [Staphylococcus aureus
A6224]
gi|258452753|ref|ZP_05700750.1| response regulator arlR [Staphylococcus aureus A5948]
gi|258454635|ref|ZP_05702599.1| two-component system response regulator [Staphylococcus aureus
A5937]
gi|269203038|ref|YP_003282307.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus ED98]
gi|282892909|ref|ZP_06301144.1| response regulator arlR [Staphylococcus aureus A8117]
gi|282903998|ref|ZP_06311886.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus C160]
gi|282905760|ref|ZP_06313615.1| response regulator arlR [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908732|ref|ZP_06316550.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282914206|ref|ZP_06321993.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus M899]
gi|282916682|ref|ZP_06324440.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
gi|282919128|ref|ZP_06326863.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
gi|282924311|ref|ZP_06331985.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
gi|282927663|ref|ZP_06335278.1| response regulator arlR [Staphylococcus aureus A9765]
gi|282927940|ref|ZP_06335549.1| response regulator arlR [Staphylococcus aureus A10102]
gi|283770486|ref|ZP_06343378.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
gi|283958180|ref|ZP_06375631.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024415|ref|ZP_06378813.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus 132]
gi|293501230|ref|ZP_06667081.1| response regulator arlR [Staphylococcus aureus subsp. aureus
58-424]
gi|293510193|ref|ZP_06668901.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
gi|293526786|ref|ZP_06671471.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus M1015]
gi|294850787|ref|ZP_06791503.1| response regulator arlR [Staphylococcus aureus A9754]
gi|295406362|ref|ZP_06816169.1| response regulator arlR [Staphylococcus aureus A8819]
gi|295427928|ref|ZP_06820560.1| response regulator arlR [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275275|ref|ZP_06857782.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus MR1]
gi|297207928|ref|ZP_06924361.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297244591|ref|ZP_06928474.1| response regulator arlR [Staphylococcus aureus A8796]
gi|297591110|ref|ZP_06949748.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|300912012|ref|ZP_07129455.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|304381007|ref|ZP_07363663.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|67460127|sp|P0C000|ARLR_STAAM RecName: Full=Response regulator ArlR
gi|67460128|sp|P0C001|ARLR_STAAW RecName: Full=Response regulator ArlR
gi|67460163|sp|Q5HG04|ARLR_STAAC RecName: Full=Response regulator ArlR
gi|67460280|sp|Q6G9E6|ARLR_STAAS RecName: Full=Response regulator ArlR
gi|67460282|sp|Q6GGZ3|ARLR_STAAR RecName: Full=Response regulator ArlR
gi|67460427|sp|Q9KJN4|ARLR_STAA8 RecName: Full=Response regulator ArlR
gi|123485963|sp|Q2FH23|ARLR_STAA3 RecName: Full=Response regulator ArlR
gi|123549162|sp|Q2YY03|ARLR_STAAB RecName: Full=Response regulator ArlR
gi|9230552|gb|AAF85896.1|AF165314_1 putative response regulator ArlR [Staphylococcus aureus]
gi|14247186|dbj|BAB57577.1| truncated (putative response regulator) [Staphylococcus aureus
subsp. aureus Mu50]
gi|21204473|dbj|BAB95170.1| truncated (putative response regulator ArlR [Staphylococcus aureus
subsp. aureus MW2]
gi|49241734|emb|CAG40424.1| response regulator protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244699|emb|CAG43133.1| response regulator protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286102|gb|AAW38196.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus COL]
gi|82656538|emb|CAI80960.1| two-component response regulator [Staphylococcus aureus RF122]
gi|87127448|gb|ABD21962.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202703|gb|ABD30513.1| DNA-binding response regulator, putative [Staphylococcus aureus
subsp. aureus NCTC 8325]
gi|147740972|gb|ABQ49270.1| two component transcriptional regulator, winged helix family
[Staphylococcus aureus subsp. aureus JH9]
gi|149946418|gb|ABR52354.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JH1]
gi|150374340|dbj|BAF67600.1| two-component response regulator [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156721869|dbj|BAF78286.1| truncated putative response regulator [Staphylococcus aureus subsp.
aureus Mu3]
gi|160368389|gb|ABX29360.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253724214|gb|EES92943.1| response regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728690|gb|EES97419.1| response regulator protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271936|gb|EEV04074.1| response regulator arlR [Staphylococcus aureus subsp. aureus
55/2053]
gi|257274980|gb|EEV06467.1| two-component system response regulator [Staphylococcus aureus
subsp. aureus 65-1322]
gi|257278899|gb|EEV09518.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus 68-397]
gi|257281623|gb|EEV11760.1| two component transcriptional regulator [Staphylococcus aureus
subsp. aureus E1410]
gi|257284653|gb|EEV14773.1| response regulator protein [Staphylococcus aureus subsp. aureus
M876]
gi|257789502|gb|EEV27842.1| response regulator protein [Staphylococcus aureus A9781]
gi|257839902|gb|EEV64370.1| response regulator protein [Staphylococcus aureus A9763]
gi|257843503|gb|EEV67910.1| two-component system response regulator [Staphylococcus aureus
A9719]
gi|257847309|gb|EEV71315.1| two component transcriptional regulator [Staphylococcus aureus
A9635]
gi|257849034|gb|EEV73016.1| response regulator protein [Staphylococcus aureus A9299]
gi|257850244|gb|EEV74197.1| two-component system response regulator [Staphylococcus aureus
A8115]
gi|257853605|gb|EEV76564.1| two-component system response regulator [Staphylococcus aureus
A6300]
gi|257857243|gb|EEV80141.1| two-component system response regulator [Staphylococcus aureus
A6224]
gi|257859566|gb|EEV82417.1| response regulator arlR [Staphylococcus aureus A5948]
gi|257863018|gb|EEV85782.1| two-component system response regulator [Staphylococcus aureus
A5937]
gi|262075328|gb|ACY11301.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus ED98]
gi|269940910|emb|CBI49294.1| response regulator ArlR [Staphylococcus aureus subsp. aureus TW20]
gi|282313698|gb|EFB44091.1| response regulator arlR [Staphylococcus aureus subsp. aureus C101]
gi|282316938|gb|EFB47312.1| response regulator arlR [Staphylococcus aureus subsp. aureus C427]
gi|282319169|gb|EFB49521.1| response regulator arlR [Staphylococcus aureus subsp. aureus D139]
gi|282322274|gb|EFB52598.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus M899]
gi|282326996|gb|EFB57291.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331052|gb|EFB60566.1| response regulator arlR [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590237|gb|EFB95317.1| response regulator arlR [Staphylococcus aureus A10102]
gi|282592052|gb|EFB97079.1| response regulator arlR [Staphylococcus aureus A9765]
gi|282595616|gb|EFC00580.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus C160]
gi|282764906|gb|EFC05031.1| response regulator arlR [Staphylococcus aureus A8117]
gi|283460633|gb|EFC07723.1| response regulator arlR [Staphylococcus aureus subsp. aureus H19]
gi|283470630|emb|CAQ49841.1| transcriptional regulatory protein ResD [Staphylococcus aureus
subsp. aureus ST398]
gi|283790329|gb|EFC29146.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285817093|gb|ADC37580.1| Putative response regulator ArlR [Staphylococcus aureus 04-02981]
gi|290920858|gb|EFD97921.1| DNA-binding response regulator ArlR [Staphylococcus aureus subsp.
aureus M1015]
gi|291096235|gb|EFE26496.1| response regulator arlR [Staphylococcus aureus subsp. aureus
58-424]
gi|291467137|gb|EFF09655.1| response regulator arlR [Staphylococcus aureus subsp. aureus M809]
gi|294822362|gb|EFG38815.1| response regulator arlR [Staphylococcus aureus A9754]
gi|294968950|gb|EFG44972.1| response regulator arlR [Staphylococcus aureus A8819]
gi|295128286|gb|EFG57920.1| response regulator arlR [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296887502|gb|EFH26402.1| response regulator [Staphylococcus aureus subsp. aureus ATCC 51811]
gi|297178621|gb|EFH37867.1| response regulator arlR [Staphylococcus aureus A8796]
gi|297575996|gb|EFH94712.1| response regulator [Staphylococcus aureus subsp. aureus MN8]
gi|298694710|gb|ADI97932.1| two-component response regulator [Staphylococcus aureus subsp.
aureus ED133]
gi|300886258|gb|EFK81460.1| response regulator [Staphylococcus aureus subsp. aureus TCH70]
gi|302333028|gb|ADL23221.1| response regulator receiver [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302751245|gb|ADL65422.1| response regulator receiver [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304340451|gb|EFM06389.1| response regulator [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312829810|emb|CBX34652.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129124|gb|EFT85119.1| response regulator [Staphylococcus aureus subsp. aureus CGS03]
gi|315195310|gb|EFU25697.1| response regulator [Staphylococcus aureus subsp. aureus CGS00]
gi|315195878|gb|EFU26245.1| response regulator [Staphylococcus aureus subsp. aureus CGS01]
gi|320139559|gb|EFW31429.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA131]
gi|320142167|gb|EFW33985.1| response regulator receiver domain protein [Staphylococcus aureus
subsp. aureus MRSA177]
gi|323444069|gb|EGB01680.1| two-component response regulator [Staphylococcus aureus O46]
gi|329314093|gb|AEB88506.1| Response regulator ArlR [Staphylococcus aureus subsp. aureus T0131]
gi|329727364|gb|EGG63820.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21172]
gi|329730558|gb|EGG66944.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21189]
gi|329733445|gb|EGG69777.1| response regulator ArlR [Staphylococcus aureus subsp. aureus 21193]
Length = 219
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ ++ RFL L Y V + +G DK + L++ D+++P ++
Sbjct: 1 MTQ-ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|222110688|ref|YP_002552952.1| winged helix family two component heavy metal response
transcriptional regulator PhoB [Acidovorax ebreus TPSY]
gi|221730132|gb|ACM32952.1| two component transcriptional regulator PhoB, winged helix family
[Acidovorax ebreus TPSY]
Length = 235
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ + +G SA ++ ++L D ++P
Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G++LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|150391007|ref|YP_001321056.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149950869|gb|ABR49397.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 232
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ ED+ ++ + L YE + +NG A +++ F ++ D+++P++ G
Sbjct: 5 KKRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ +R L + ++ +T + ++KPF ++LV V ++
Sbjct: 65 EEICKRIR-LQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRT 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|310659192|ref|YP_003936913.1| DNA-binding response regulator in two-component regulatory system
with phor (or crec) [Clostridium sticklandii DSM 519]
gi|308825970|emb|CBH22008.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Clostridium sticklandii]
Length = 230
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+K+L+ +D++++ L + GY+V +G A K ++ L+L D+++P MD
Sbjct: 1 MNKKVLIVDDEENIVELLKFNMELKGYKVEYAYDGEEALKKAKDIKPGLILLDLMLPIMD 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + E + D ++ +T ++KPF +++L+ V +
Sbjct: 61 GTKVCSKIREDEELKDTPIIMLTAKNMEKDKIYGLELGADDYITKPFSIKELMARVKAVT 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|226310694|ref|YP_002770588.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093642|dbj|BAH42084.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 230
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ + +FL L G++V++ +G +A V+E +++ D++MP MDG E
Sbjct: 11 KILLVDDEPTILQFLEMGLENEGFQVLTAQDGMNAVTMVKEHQPHVVILDVMMPGMDGFE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ ++ + +T V + KPF +L+ ++ I+N
Sbjct: 71 VCRMLKKIQ-NVATIMLTAREDVEDRVKGLTLGADDYMIKPFSFEELLARIHA--RIRN 126
>gi|167750198|ref|ZP_02422325.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
gi|167656760|gb|EDS00890.1| hypothetical protein EUBSIR_01172 [Eubacterium siraeum DSM 15702]
Length = 235
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ ++ + L GY V NG A + + L + D+++P++D
Sbjct: 1 MNESILIVDDEKEIADLIEVYLENDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFRICQKIREQYYY-PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|21225507|ref|NP_631286.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|256783473|ref|ZP_05521904.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289767351|ref|ZP_06526729.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|8546941|emb|CAB94653.1| putative two-component system response regulator [Streptomyces
coelicolor A3(2)]
gi|289697550|gb|EFD64979.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 229
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD +R + AL + G+EV + G +++R ++ D+++P M G+E
Sbjct: 3 RVLIIEDDRAVRDGVRLALRRQGHEVAAAATGEDGLEQLRSFRPDAVVLDLMLPGMSGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D + ++ T + KP R L + +L
Sbjct: 63 VCRRIRAHD-QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARILDARIRAVLRR 118
>gi|19553806|ref|NP_601808.1| two-component system, response regulator [Corynebacterium
glutamicum ATCC 13032]
gi|62391446|ref|YP_226848.1| two component response regulator [Corynebacterium glutamicum ATCC
13032]
gi|21325379|dbj|BAC00001.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
gi|41326787|emb|CAF21269.1| putative two component response regulator [Corynebacterium
glutamicum ATCC 13032]
Length = 235
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L +L G+ V++ N+G A RE + D++MP MDG E
Sbjct: 10 RVLVVDDEPNIVELLTVSLKFQGFAVMTANDGNEALKIAREFRPDAYILDVMMPGMDGFE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+++T AV ++KPF L +++ + +L
Sbjct: 70 LLTKLRGEGLDSPVLYLTAKDAVEHRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|295697098|ref|YP_003590336.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
gi|295412700|gb|ADG07192.1| two component transcriptional regulator, winged helix family
[Bacillus tusciae DSM 2912]
Length = 243
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDG 61
++IL+ +D++ + L L KAGY + + + ++RE L++ D ++P+M G
Sbjct: 2 ERILVVDDEEAILAVLQFHLEKAGYVAETATHPEEVFQRLREGEPVDLIILDHMLPDMSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ + + + ++F+T ++KPF R+L + +L
Sbjct: 62 LDICKILRQEGITIPIIFLTALDDEVERVLCLEMGADDYITKPFRPRELAARIRAVLRR 120
>gi|253999965|ref|YP_003052028.1| two component transcriptional regulator PhoB [Methylovorus sp.
SIP3-4]
gi|313201938|ref|YP_004040596.1| two component transcriptional regulator PhoB [Methylovorus sp.
MP688]
gi|253986644|gb|ACT51501.1| two component transcriptional regulator PhoB, winged helix family
[Methylovorus sp. SIP3-4]
gi|312441254|gb|ADQ85360.1| two component transcriptional regulator PhoB, winged helix family
[Methylovorus sp. MP688]
Length = 228
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ L L +AG+ + + A +RE L++ D ++P M
Sbjct: 1 MPANILIVEDEPAIQELLALNLTQAGHNPIRALSVEQAQMLIREALPDLIILDWMLPGMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE AR+ E + ++ +T A ++KPF R+L + +L
Sbjct: 61 GIEFARKLKSDEFTKAIPIIMLTARGEEADKVKGLEVGADDYVTKPFSPRELNARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|229184192|ref|ZP_04311401.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
gi|228599307|gb|EEK56918.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1]
Length = 228
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 68 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|47569833|ref|ZP_00240502.1| response regulator DrrA [Bacillus cereus G9241]
gi|47553479|gb|EAL11861.1| response regulator DrrA [Bacillus cereus G9241]
Length = 229
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKTIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|254524305|ref|ZP_05136360.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas sp. SKA14]
gi|219721896|gb|EED40421.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas sp. SKA14]
Length = 239
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60
+++L+ EDD + L LG GY+V +G + + +E L+ D+++P +D
Sbjct: 3 TKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +RA + + ++ I+ + L+KPF + +LV V LL
Sbjct: 63 GLQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRR 122
>gi|213691593|ref|YP_002322179.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213523054|gb|ACJ51801.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|320457681|dbj|BAJ68302.1| two-component response regulator [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 243
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ I++ +D+ +R L+ +L AG+EV + +G+ A + + + L++ D+++
Sbjct: 1 MSKPIEASIVVVDDEPSIRELLVASLHFAGFEVNTAASGSEAIEVIEKVQPDLIVLDVML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG + RR + V+F+T ++KPF L ++V +
Sbjct: 61 PDIDGFTVTRRIRQEGITAPVLFLTARDDTQDKIMGLTVGGDDYVTKPFSLEEVVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|157144822|ref|YP_001452141.1| acetoacetate metabolism regulatory protein AtoC [Citrobacter koseri
ATCC BAA-895]
gi|157082027|gb|ABV11705.1| hypothetical protein CKO_00549 [Citrobacter koseri ATCC BAA-895]
Length = 461
Score = 149 bits (379), Expect = 8e-35, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 61/118 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E +NG +A + P ++L DI MPEM+GIE
Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETQCASNGQTALQHFADAPPDVVLMDIRMPEMNGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P + ++ +T +A V ++ + KPF L +L + R L ++
Sbjct: 66 ALKVMRAQHPRVPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123
>gi|326328836|ref|ZP_08195171.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
Broad-1]
gi|325953367|gb|EGD45372.1| DNA-binding response regulator ResD [Nocardioidaceae bacterium
Broad-1]
Length = 228
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L L ++VV +G A + E P +++ D+++P +DG+E
Sbjct: 3 RVLVVDDDLTVREVLASYLRAGSHDVVEAGDGEQALRAMSERPADIVVLDLMLPGIDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ +T + A + KPF R+LV V+ +L
Sbjct: 63 VCRRLRQAG-EVPIIMLTALGSEADRIMGLELGADDYVGKPFSPRELVLRVDSVLKR 118
>gi|293374093|ref|ZP_06620428.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
gi|292647259|gb|EFF65234.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
Length = 235
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R + L G E + +NG A D ++ L+L D++MP+MDGI
Sbjct: 5 RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ ++ +T + + ++KPF+ +LV V L
Sbjct: 65 TTSLIRE-FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRR 120
>gi|293377150|ref|ZP_06623359.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
gi|292644239|gb|EFF62340.1| putative regulatory protein VanR [Enterococcus faecium PC4.1]
Length = 226
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ + + L Y V +GA A +K + L++ D+++P+ DG+
Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E+ ++ ++ +T + + KPF ++LV + +L
Sbjct: 62 VCRKIREI-SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117
>gi|125975548|ref|YP_001039458.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256005901|ref|ZP_05430847.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281416559|ref|ZP_06247579.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|125715773|gb|ABN54265.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|255990137|gb|EEU00273.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281407961|gb|EFB38219.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|316939665|gb|ADU73699.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 230
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD+ + L L G+ V C NG ++R+ + LL+ DI++P M+G
Sbjct: 2 RKILIVEDDESIGELLRDYLEINGFSVDICMNGTEGLKRIRDGEYDLLILDIMLPGMNGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---- 118
E+ ++ + D+ V+ ++ ++KPF +LV VN +
Sbjct: 62 EILKKIRDE-KDIPVLIVSAKKEEFDKIHGLKLGADDYITKPFSPGELVARVNAHIAKYE 120
Query: 119 TIKN 122
++N
Sbjct: 121 RLRN 124
>gi|291562138|emb|CBL40954.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 229
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G + + E F L + D+++P +D
Sbjct: 1 MS-KILIVEDEESIAELEKDYLELSGFEVEIENDGEAGLKRAISEEFDLFILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + V+ I+ ++KPF ++V V L+
Sbjct: 60 GFEICKKIRE-TKNTPVIMISAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLSR 118
>gi|312197850|ref|YP_004017911.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229186|gb|ADP82041.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 306
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + AL G+EV + +G +A +V +P LL+ D+++ ++DG
Sbjct: 80 RVLVVDDEEAITDLVAMALRYEGFEVETVRSGQAALTRVALDPPDLLVLDVMLGDIDGFA 139
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + +F+T ++KPF + +LV V +L
Sbjct: 140 VCERLRGAGHGVPTLFLTARDTTQDKVRGLTLGGDDYVTKPFSVSELVARVRAILRR 196
>gi|228912339|ref|ZP_04076034.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228847322|gb|EEM92281.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 238
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD D+ L L G+ V+ ++G +A V+E L + DI+MP+MD
Sbjct: 1 MKKTILIVDDDTDIIELLKLFLEIEGFLVLEASDGEAALKYVKENHIDLAIVDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ E ++ ++ + KPF +++ V L
Sbjct: 61 GYQLIKKVRETLK-FPILILSAKTQEIDKIMGLGLGADDFIVKPFSPLEIIARVQAHLRR 119
>gi|227329683|ref|ZP_03833707.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 232
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQIL-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|198284942|ref|YP_002221263.1| winged helix family two component transcriptional regulator
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666606|ref|YP_002427627.1| transcriptional regulator OmpR, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198249463|gb|ACH85056.1| two component transcriptional regulator, winged helix family
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518819|gb|ACK79405.1| transcriptional regulator OmpR, putative [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 245
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KILL +DD +R L++ L G+ V + +G ++ E + LLL D++MP
Sbjct: 1 MTEGGKILLVDDDPRLRTMLVRYLEGQGFIVHAAASGVQMDRQLEREYYDLLLLDVLMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG + +R +P L ++ +T +A LSKPF ++LV + +L
Sbjct: 61 EDGFSICQRLRVQEPHLPIIMLTARGDLADRVQGLDVGADDYLSKPFEPQELVARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|218903108|ref|YP_002450942.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|218539130|gb|ACK91528.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 254
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|291523336|emb|CBK81629.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 246
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 66/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + + K+L +AGYEV +CN+G A D + E + L++ D+ +P MDG+E
Sbjct: 22 KLLVVEDEKKLCDMIAKSLHQAGYEVDTCNDGEQALDMIYAELYDLIVLDLNLPGMDGME 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + + KV+ ++ + +A + + KPFHL++L V L K
Sbjct: 82 ILRELRKENEETKVLILSARSQIADKVEGLDSGANDYMEKPFHLQELEARVRSLTRRK 139
>gi|253568433|ref|ZP_04845844.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|251842506|gb|EES70586.1| two-component system response regulator [Bacteroides sp. 1_1_6]
Length = 231
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ +LL ED+ + + L + G+ + + ++G E +L+ D++MP
Sbjct: 1 MNKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 KMDGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 120
Query: 118 L 118
+
Sbjct: 121 M 121
>gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
Length = 242
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+ V + +G + K ++ ++++D++MP DG
Sbjct: 16 RILLVDDEPGIRTAVQAYLEDEGFAVTTAIDGEEGWQKAQQIVPDVVISDVMMPRCDGYG 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R E + V+F+T + KPF +L+ V ++ +
Sbjct: 76 LLKRLREDERLGGTPVIFLTAKGMTIDRTQGYQAGVDDYIPKPFDPDELIARVRNVVKRQ 135
>gi|186684867|ref|YP_001868063.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186467319|gb|ACC83120.1| multi-component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 989
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD L L Y V +G +A+D ++ + L+L D+V+P++DGI
Sbjct: 2 KILIVEDDGLNAYTLTNLLTNQNYAVEVATDGDAAWDCIQAYDYDLILLDVVLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +TG + L KPF + +LV + LL
Sbjct: 62 LCRKIRSNNLQMPILLMTGRNSSHEKAIGLDAGADDYLVKPFDIEELVARIRALLRR 118
Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L L G ++ N ++ + +L+ D+ +P ++GIE
Sbjct: 397 KILVVDDDPQIQALLQTLLSPWGLRAIALENPLQFWETLEAVAPDMLILDVELPYINGIE 456
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R +L ++F+T + + + +SKP +LV + L
Sbjct: 457 LCRLVRNDSHWSELPILFLTVHSDAEMVNQVFSIGADDFVSKPIVGPELVTRIVNRLER 515
>gi|291294434|ref|YP_003505832.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
gi|290469393|gb|ADD26812.1| two component transcriptional regulator, winged helix family
[Meiothermus ruber DSM 1279]
Length = 234
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ L L + G+ ++G A + VR L+L DI++PEMDG+E+
Sbjct: 14 VLVVEDEPEIAEILEGYLRREGFRTERASDGRQALNLVRAARPDLVLLDIMLPEMDGLEV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+ +T ++KPF R++V V +L
Sbjct: 74 LRRIRSSG-HTPVILVTARTEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRR 128
>gi|269796544|ref|YP_003315999.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269098729|gb|ACZ23165.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 271
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G++V + +G +A RE +++ DI++ ++DG+E
Sbjct: 24 RVLVVDDEPNLAELLTSALRYEGWDVSTALDGQTAVRLARETVPDVIVLDIMLGDIDGLE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+F+T +V ++KPF L ++V + LL
Sbjct: 84 VLRRIRQQQEGVPVLFLTARDSVEDRVAGLTAGGDDYVTKPFSLEEVVARLRGLLRR 140
>gi|255523933|ref|ZP_05390896.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296185172|ref|ZP_06853582.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255512364|gb|EET88641.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296050006|gb|EFG89430.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 233
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KILL +D+ + + AL K GY V +G A DKV +++ D+++P ++
Sbjct: 1 MNEKILLVDDEKSILDVVTYALKKEGYFVERAYDGREALDKVEVYKPHIVVLDLMLPVIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ +R ++ ++ +T + ++KPF +R+L+ + L+
Sbjct: 61 GYDVCKRL--EGKNIGIIMLTAKEDIVDKILGLELGADDYMTKPFDIRELIARIKSLIRR 118
>gi|253582131|ref|ZP_04859355.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251836480|gb|EES65017.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 220
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ ++R L L AGYEV +G A E+PF L++ DI++P+ DG
Sbjct: 2 KKILIVEDEKEIRNILKVYLLTAGYEVTEAADGEEAMRIFYEKPFDLVVLDIMLPKKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E + V+ IT ++KPF + + V +L K+
Sbjct: 62 SICREIKE-YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTILKNKS 120
>gi|311106092|ref|YP_003978945.1| transcriptional regulator ResD [Achromobacter xylosoxidans A8]
gi|310760781|gb|ADP16230.1| transcriptional regulatory protein ResD [Achromobacter xylosoxidans
A8]
Length = 242
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GY V +G ++ E + L+ D+++P +DG+
Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEHAADGNEGMRRLEEGSWDALVLDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ +RA + ++ + ++ L+KPF + +LV V LL +
Sbjct: 65 EICKRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRRSD 124
>gi|229173212|ref|ZP_04300761.1| Sensor histidine kinase [Bacillus cereus MM3]
gi|228610296|gb|EEK67569.1| Sensor histidine kinase [Bacillus cereus MM3]
Length = 231
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQIISTYEVDLMVLDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEMRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|163803355|ref|ZP_02197232.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
AND4]
gi|159172868|gb|EDP57708.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
AND4]
Length = 1129
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + +G + +E LLL DI+MP M G ++
Sbjct: 727 VADDEPVNLRILESFLRLEGYRVRTIADGPETLALIEQEKPELLLLDIMMPGMSGYQVCS 786
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E +L ++ +TG + L+KPF+ ++L + LT
Sbjct: 787 KLREHFDHAELPIIMLTGMSQTEDRVKGFEAGANDYLTKPFNKQELAARIQAHLT 841
>gi|39937833|ref|NP_950109.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris CGA009]
gi|192293618|ref|YP_001994223.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
gi|39651693|emb|CAE30215.1| two-component phosphate transcriptional regulator PhoB
[Rhodopseudomonas palustris CGA009]
gi|192287367|gb|ACF03748.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
Length = 237
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GYEV + G A +++E L++ D ++P +
Sbjct: 1 MAARILVVEDEEALTTLLRYNLESEGYEVETVARGDDADTRMKERIPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|17229920|ref|NP_486468.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131520|dbj|BAB74127.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 1627
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ L L Y V ++G +A++ ++ + L+L D+++P +DGI
Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVMLPRLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + ++ +TG + + KPF +LV V LL
Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L +DD + L L G +V++ ++ ++ +R+ LL+ D+ MP +GIE
Sbjct: 380 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 439
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +L ++F+T + + +SKP +LV + L
Sbjct: 440 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 498
Score = 96.7 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD +R L L + GY V + G A + +++ D++MP M+G E
Sbjct: 1379 VLVCDDDPLIRTELQSLLEQGGYRVFTVATGQEAIASASTQHPDVIVLDLLMPGMNGWET 1438
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E + ++ + + + + S +SKP L++ + + +
Sbjct: 1439 MAMLKESTETKHIPIVICSVYKPTSNHQPSRD--FVDWVSKPVQESYLLHSLRQAI 1492
Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+ + + E S G A +E LL+ D+++PE DG
Sbjct: 1500 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1559
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRLLTI 120
+ + ++ V+ + + + L+K ++ V LL
Sbjct: 1560 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1619
>gi|114330073|ref|YP_746295.1| two component heavy metal response transcriptional regulator,
winged helix family protein [Nitrosomonas eutropha C91]
gi|114307087|gb|ABI58330.1| two component heavy metal response transcriptional regulator,
winged helix family protein [Nitrosomonas eutropha C91]
Length = 231
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + +L +AL + GY V +G +E P+ L+L D+++P MDG +
Sbjct: 2 KVLVVEDEKKLADYLRRALTEHGYVVDVAGDGREGLYFAQETPYDLILLDVMLPGMDGFQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R + + V+ ++ V L KPF L +L+ + L +N
Sbjct: 62 LLRELRKK-SRVPVIMLSARDRVEDRVRGLEDGADDYLPKPFSLTELMARIFA-LARRN 118
>gi|319779028|ref|YP_004129941.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Taylorella equigenitalis MCE9]
gi|317109052|gb|ADU91798.1| Phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Taylorella equigenitalis MCE9]
Length = 233
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ + L AG++V+ + A + E L+L D ++P
Sbjct: 1 MASTILVVEDEPAIQELISVNLTFAGHKVLRALDAQQAKILIDAELPDLILLDWMLPTTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR E D+ ++ +T + + ++KPF ++L+ + +L
Sbjct: 61 GLSLARSLRSDERTQDIPIIMLTAKNSEHDKVEGLENGADDYITKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|261819497|ref|YP_003257603.1| DCpxR family transcriptional regulator [Pectobacterium wasabiae
WPP163]
gi|261603510|gb|ACX85996.1| two component transcriptional regulator, winged helix family
[Pectobacterium wasabiae WPP163]
Length = 232
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A V + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDKELTALLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|229592349|ref|YP_002874468.1| putative two-component response regulator [Pseudomonas fluorescens
SBW25]
gi|229364215|emb|CAY51897.1| putative two-component response regulator [Pseudomonas fluorescens
SBW25]
Length = 244
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V +GA + E P L++ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + + ++ +T + A + KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|227550077|ref|ZP_03980126.1| response regulator [Enterococcus faecium TX1330]
gi|257885994|ref|ZP_05665647.1| two-component system response regulator [Enterococcus faecium
1,231,501]
gi|293568562|ref|ZP_06679881.1| regulatory protein VanR [Enterococcus faecium E1071]
gi|307287256|ref|ZP_07567324.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|325571902|ref|ZP_08147192.1| response regulator [Enterococcus casseliflavus ATCC 12755]
gi|227180794|gb|EEI61766.1| response regulator [Enterococcus faecium TX1330]
gi|257821850|gb|EEV48980.1| two-component system response regulator [Enterococcus faecium
1,231,501]
gi|291588736|gb|EFF20565.1| regulatory protein VanR [Enterococcus faecium E1071]
gi|306501713|gb|EFM71005.1| response regulator receiver domain protein [Enterococcus faecalis
TX0109]
gi|325155630|gb|EGC67834.1| response regulator [Enterococcus casseliflavus ATCC 12755]
Length = 226
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ + + L Y V +GA A +K + L++ D+++P+ DG+
Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E+ ++ ++ +T + + KPF ++LV + +L
Sbjct: 62 VCRKIREV-SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117
>gi|219847541|ref|YP_002461974.1| response regulator receiver modulated diguanylate cyclase
[Chloroflexus aggregans DSM 9485]
gi|219541800|gb|ACL23538.1| response regulator receiver modulated diguanylate cyclase
[Chloroflexus aggregans DSM 9485]
Length = 313
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+DD ++R L L +AG++V+ +G++ +E+ ++L D+++P +DG E
Sbjct: 9 TVLIADDDPNLRFLLSDMLQRAGFDVLVAEDGSALLQIAQEQLPDIILVDLMLPGVDGYE 68
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L ++ +T A ++KPF+ +L+ + LL
Sbjct: 69 AIRQLRNDTRTAHLPIIIVTARTNPADVVIGFDTGADDYVTKPFNEAELIARIRSLLRR 127
>gi|44004551|ref|NP_982220.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|190015016|ref|YP_001966750.1| DNA-binding response regulator [Bacillus cereus]
gi|190015282|ref|YP_001967074.1| DNA-binding response regulator [Bacillus cereus]
gi|218848201|ref|YP_002455136.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|296506624|ref|YP_003667858.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
gi|42741617|gb|AAS45062.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|116584692|gb|ABK00807.1| DNA-binding response regulator [Bacillus cereus]
gi|116584963|gb|ABK01072.1| DNA-binding response regulator [Bacillus cereus]
gi|218540252|gb|ACK92648.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|296327211|gb|ADH10138.1| DNA-binding response regulator [Bacillus thuringiensis BMB171]
Length = 227
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY + +G A V + F LLL DI+MPEM+G E
Sbjct: 4 ILLVDDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ +T ++KPFH +L+ + +L
Sbjct: 64 CNKIRE-FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 118
>gi|67921356|ref|ZP_00514875.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67857473|gb|EAM52713.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 225
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ILL ED+ + +F+ L GY V N+G S RE L+L D ++P M G
Sbjct: 3 NPNILLVEDEAKLAQFIELELKYEGYNVTVVNDGLSGLSNARESDPDLILLDWMLPGMSG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ +R + ++ ++ +T + + KPF+L +L+ V L
Sbjct: 63 VDICKRLRQTGNNVPIILLTAKDDIGDRVAGLDAGADDYIVKPFNLEELLARVRANLRR 121
>gi|319782570|ref|YP_004142046.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317168458|gb|ADV11996.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 242
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L G+ V + + ++ F L++ D+++P+ G++
Sbjct: 6 HILVVDDDREIRTLLQRYLDSQGFRVTAAADRRECEQRLGSGQFDLIVLDVMLPDGSGLD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + P ++ +T L KPF+ R+L+ + +L
Sbjct: 66 ICRGLRDRKPHTPIILLTALKEDVDRIIGLELGADDYLGKPFNPRELIARIRAVLRR 122
>gi|315640983|ref|ZP_07896074.1| response regulator [Enterococcus italicus DSM 15952]
gi|315483254|gb|EFU73759.1| response regulator [Enterococcus italicus DSM 15952]
Length = 226
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ + + L Y V +GA A +K + L++ D+++P+ DG+
Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E+ ++ ++ +T + + KPF ++LV + +L
Sbjct: 62 VCRKIREV-SNVPIIMLTAKSDEDDILTGLKLGADDYMIKPFSPKELVARIQTVLRR 117
>gi|302527318|ref|ZP_07279660.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302436213|gb|EFL08029.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 230
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MNQ+ +L+ +D+ +R L AL Y V + +GA A V + L+L D++
Sbjct: 1 MNQRTNVGTLLVVDDEPAVREALTDALETQSYAVHTACDGAEALRAVADLRPDLILLDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MP +DG+ + R ++ +T A D + KP+ L +L +
Sbjct: 61 MPALDGLAVCRALRSAGDRTPIVALTARTAAQDRIDGLDAGADDYVLKPYDLGELFARIR 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|300864253|ref|ZP_07109133.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
gi|300337718|emb|CBN54279.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
Length = 1140
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
KIL+ +D+ + LI L YEV NG A + + L+L D++MP M G
Sbjct: 730 KILIVDDEPVNIQVLINNLSVLKYEVTQATNGFEALEIIENGFRPDLILLDVMMPRMSGY 789
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E P +L ++ +T V + LSKPF +L+ + + +
Sbjct: 790 EVCQILREKFPAIELPIVMLTAKNQVTDLVEGFNSGANDYLSKPFSKNELLARIKTHIRL 849
>gi|268609963|ref|ZP_06143690.1| two component transcriptional regulator, winged helix family
protein [Ruminococcus flavefaciens FD-1]
Length = 233
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
++IL+ ED+D +R F++ L +AGY+VV N G A E F ++L DI+MP +D
Sbjct: 2 KRILICEDEDTIREFVVINLKRAGYDVVDVNCGEDALKTFEAEHGNFDVVLLDIMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E + ++ +T ++KPF +L V+ +
Sbjct: 62 GFTVCKKIREKSSTIGIIMLTARTQEMDKVSGLMIGADDYITKPFSPSELTARVDAIYRR 121
>gi|223936641|ref|ZP_03628552.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223894805|gb|EEF61255.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 230
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD + L + L YEV CN G A + +L++ D+++P +
Sbjct: 1 MKTRILIIEDDPHIALGLEEVLKSESYEVALCNRGDKAMEAFNRLHPALIVLDVMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++ +T ++KPF +R+L+ + LL
Sbjct: 61 GYDVCKQLRAKKINTPILMLTAKGQEIDKVIGLDLGADDYVTKPFGVRELLARIQALLRR 120
>gi|90579403|ref|ZP_01235213.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
gi|90440236|gb|EAS65417.1| putative DNA-binding response regulator PhoB [Vibrio angustum S14]
Length = 229
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + +A +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|117929039|ref|YP_873590.1| two component transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117649502|gb|ABK53604.1| two component transcriptional regulator, winged helix family
[Acidothermus cellulolyticus 11B]
Length = 245
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDDD +R + AL G+EV+ +GA+ + ++L D+++P++DG E
Sbjct: 20 RILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGFE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ ++ +T ++KPF +++L + LL
Sbjct: 80 CCRRLR-RSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRR 135
>gi|22125369|ref|NP_668792.1| response regulator [Yersinia pestis KIM 10]
gi|45442409|ref|NP_993948.1| putative response regulator [Yersinia pestis biovar Microtus str.
91001]
gi|51597048|ref|YP_071239.1| two-component response regulator [Yersinia pseudotuberculosis IP
32953]
gi|108808192|ref|YP_652108.1| putative two-component response regulator [Yersinia pestis Antiqua]
gi|108811537|ref|YP_647304.1| two-component response regulator [Yersinia pestis Nepal516]
gi|145599392|ref|YP_001163468.1| two-component response regulator [Yersinia pestis Pestoides F]
gi|153946864|ref|YP_001400283.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
31758]
gi|162418219|ref|YP_001607153.1| DNA-binding response regulator [Yersinia pestis Angola]
gi|166011234|ref|ZP_02232132.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166212492|ref|ZP_02238527.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167399427|ref|ZP_02304951.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167424627|ref|ZP_02316380.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|186896131|ref|YP_001873243.1| two component transcriptional regulator [Yersinia
pseudotuberculosis PB1/+]
gi|229895670|ref|ZP_04510841.1| putative two-component response regulator [Yersinia pestis
Pestoides A]
gi|229901804|ref|ZP_04516926.1| putative two-component response regulator [Yersinia pestis
Nepal516]
gi|270489994|ref|ZP_06207068.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294504760|ref|YP_003568822.1| response regulator [Yersinia pestis Z176003]
gi|21958252|gb|AAM85043.1|AE013750_3 putative response regulator [Yersinia pestis KIM 10]
gi|45437274|gb|AAS62825.1| putative response regulator [Yersinia pestis biovar Microtus str.
91001]
gi|51590330|emb|CAH21967.1| putative two-component response regulator [Yersinia
pseudotuberculosis IP 32953]
gi|108775185|gb|ABG17704.1| two-component response regulator [Yersinia pestis Nepal516]
gi|108780105|gb|ABG14163.1| putative two-component response regulator [Yersinia pestis Antiqua]
gi|145211088|gb|ABP40495.1| two-component response regulator [Yersinia pestis Pestoides F]
gi|152958359|gb|ABS45820.1| DNA-binding response regulator [Yersinia pseudotuberculosis IP
31758]
gi|162351034|gb|ABX84982.1| DNA-binding response regulator [Yersinia pestis Angola]
gi|165989912|gb|EDR42213.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
E1979001]
gi|166206423|gb|EDR50903.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167051931|gb|EDR63339.1| DNA-binding response regulator [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167056509|gb|EDR66278.1| DNA-binding response regulator [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|186699157|gb|ACC89786.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229681733|gb|EEO77827.1| putative two-component response regulator [Yersinia pestis
Nepal516]
gi|229701476|gb|EEO89504.1| putative two-component response regulator [Yersinia pestis
Pestoides A]
gi|262362822|gb|ACY59543.1| response regulator [Yersinia pestis D106004]
gi|262366746|gb|ACY63303.1| response regulator [Yersinia pestis D182038]
gi|270338498|gb|EFA49275.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294355219|gb|ADE65560.1| response regulator [Yersinia pestis Z176003]
gi|320014434|gb|ADV98005.1| putative two-component response regulator [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 235
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+DG +
Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++F++ +SKPF + ++ + ++
Sbjct: 62 VCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118
>gi|222082591|ref|YP_002541956.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221727270|gb|ACM30359.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 240
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D ++R L K L K G V + N GA ++R L++ DI+MP DG+
Sbjct: 6 HVLVVDDHKEIRDLLAKYLAKNGLRVSTANGGAEMRQQLRTATIDLVVLDIMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R + + ++ +T + ++KPF+ R+L+ + LL N
Sbjct: 66 LCRSLRQ-TSMVPIVLLTAVSDETDRIIGLELGADDYVTKPFNPRELLARIRALLRRAN 123
>gi|154504737|ref|ZP_02041475.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
gi|153794911|gb|EDN77331.1| hypothetical protein RUMGNA_02244 [Ruminococcus gnavus ATCC 29149]
Length = 224
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ R L L Y V SC +G A D + P+ ++ DI+MP +DG+
Sbjct: 2 RILVAEDEKDLNRLLSTRLKAEHYSVDSCFDGQEALDYLEGAPYDAVVLDIMMPVLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+ +T +V L KPF +L+ + LL
Sbjct: 62 VLKTMRQKGSQTPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLR 117
>gi|53802727|ref|YP_115492.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
Bath]
gi|53756488|gb|AAU90779.1| DNA-binding response regulator PhoB [Methylococcus capsulatus str.
Bath]
Length = 232
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ +R L L +A + V + + A +++ E+ L+L D ++P + G+E
Sbjct: 6 VLVVEDEEAIREMLTLVLEQADFAVQTAGDVQQALNRMDEQEPDLILLDWMLPGVSGVEW 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
ARR E D+ ++ +T ++KPF R+L+ + +L N
Sbjct: 66 ARRLKKDENYGDIPLILVTARGEEEDKIRGLDVGADDYVTKPFSPRELIARIRAVLRRSN 125
>gi|300855686|ref|YP_003780670.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300435801|gb|ADK15568.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 227
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D++ MR + L G ++ NG A +K E L++ DI+MP MD
Sbjct: 1 MNKTILMVDDEERMRFLIEAYLKSEGLNMIPAGNGQEALEKFNENHVDLVVLDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ ++ ++ +T A ++KP + LV ++ LL
Sbjct: 61 GWTACKELRKI-SNVPIIMLTARAEDEEQLLGFQLGTDSYVTKPVSPKVLVAKIKALLKR 119
>gi|229127391|ref|ZP_04256386.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
gi|229144600|ref|ZP_04273002.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
gi|229150217|ref|ZP_04278439.1| DNA-binding response regulator [Bacillus cereus m1550]
gi|296502577|ref|YP_003664277.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|228633336|gb|EEK89943.1| DNA-binding response regulator [Bacillus cereus m1550]
gi|228638840|gb|EEK95268.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
gi|228656073|gb|EEL11916.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4]
gi|296323629|gb|ADH06557.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 228
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|196041892|ref|ZP_03109180.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196027264|gb|EDX65883.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 225
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + ++ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-EIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|167747056|ref|ZP_02419183.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
gi|167654016|gb|EDR98145.1| hypothetical protein ANACAC_01768 [Anaerostipes caccae DSM 14662]
Length = 219
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ ED+ + + L AGY +GA A D++ +E F L+L DI++PE+D
Sbjct: 1 MN-RILIVEDEPAISNLIQMNLAAAGYCCDCAFDGAEAADRLDQEGFDLILLDIMLPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL L ++ V+F+T A L+KPF + +L+ V +L
Sbjct: 60 GYELMDYIRPL--EIPVIFLTAKANTEDKVKGLKAGADDYLTKPFEIAELLARVETVLRR 117
>gi|157429040|gb|ABB99942.2| hypothetical protein pCT0024 [Listeria monocytogenes]
Length = 226
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ + + L Y V +GA A +K + L++ D+++P+ DG+
Sbjct: 2 KILIVDDEEKILEIIDAYLVANHYSVYKAISGAMALEKFEKNNPDLVVLDLMLPDTDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E+ ++ ++ +T + + KPF ++LV + +L
Sbjct: 62 VCRKIREI-SNVPIIMLTAKSDEDDILTGLKLGADDYMLKPFSPKELVARIQTVLRR 117
>gi|116073054|ref|ZP_01470316.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9916]
gi|116068359|gb|EAU74111.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9916]
Length = 246
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD---KVREEPFSLLLTDIVMPE 58
++L+ EDDD +R + +AL G+ V SC+NGA A +EP L++ D+++P
Sbjct: 15 TARLLVVEDDDSIRETVDEALQAEGFSVRSCSNGAEALANLTMGNQEPVDLIVLDLMLPG 74
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ G+++ R+ + ++ I+ + L KPF +R+LV LL
Sbjct: 75 LGGLDVCRQLRGNNITTPILVISARDSETDRVLGLEVGADDYLVKPFGMRELVARCRALL 134
Query: 119 TI 120
Sbjct: 135 RR 136
>gi|309790814|ref|ZP_07685358.1| response regulator receiver [Oscillochloris trichoides DG6]
gi|308227101|gb|EFO80785.1| response regulator receiver [Oscillochloris trichoides DG6]
Length = 406
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ +D + + AL GYE++ +G A + E +L+ D+ MPE D
Sbjct: 1 MAQRILVVDDSPINIKAVALALEAIGYEILEATDGRMALEVAAETLPDMLILDVQMPEFD 60
Query: 61 GIELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + ++ ++ A+ ++KPF +L V LL
Sbjct: 61 GYEVCRRLRRQPAFMTRPILMLSANNALHERVQGLEAGADDYMAKPFEAEELQARVKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRAN 124
>gi|301053513|ref|YP_003791724.1| multidrug resistance ABC transporter ATP-binding protein/permease
[Bacillus anthracis CI]
gi|300375682|gb|ADK04586.1| multidrug resistance ABC transporter, ATP-binding and permease
protein [Bacillus cereus biovar anthracis str. CI]
Length = 841
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 621 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 680
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 681 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKVLLKR 735
>gi|293394600|ref|ZP_06638894.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
gi|291422909|gb|EFE96144.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
Length = 231
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + L+ L G++V G A + + +L++ D+ +P+++
Sbjct: 1 MKPPIWLVEDEPSIADTLVYTLESEGFQVRWFERGEPALQALAQGEPALIILDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL RR DL ++F+T + ++KPF R++ V +L
Sbjct: 61 GFELCRRLLAQSADLPILFLTARSDEIDRLLGLEIGADDYVAKPFSPREVSARVRTILRR 120
>gi|261404059|ref|YP_003240300.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261280522|gb|ACX62493.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 226
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++R + L +AG E V+ ++G A + + L++ DI+MP MDG
Sbjct: 3 KILVVDDDPNIRELIKVFLEEAGMEGVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + V+ +T L KPF +LV V LL
Sbjct: 63 ELCREIRRNT-GIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKR 119
>gi|94967342|ref|YP_589390.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94549392|gb|ABF39316.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 232
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ + L L + G+ V++ NG A D F LL D+++P MDG E
Sbjct: 2 RILVAEDEKRLLELLRNGLAEEGHSVITSMNGVDALDIAMSGEFDALLLDVMLPGMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T A + ++KPF +L+ + +
Sbjct: 62 VARRLRHKGRQVPILMLTARDAESDIIRGLDNGADDYVTKPFSFSELLARLRAVTRR 118
>gi|51892179|ref|YP_074870.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
gi|51855868|dbj|BAD40026.1| two-component response regulator [Symbiobacterium thermophilum IAM
14863]
Length = 234
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +DD + + L +AL + GYEV +G A + R+ L++ DI++P+MDG
Sbjct: 7 KKRILVVDDDPKILKALDQALQQEGYEVYRAEDGLQALEMARKVKPDLMILDIMLPKMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ L KPF L +L+ V +L
Sbjct: 67 FEVLAQLQSTG-GVPTLILSARGEEMDKVVGFNVGADDYLVKPFRLSELLLRVRAILRR 124
>gi|94309460|ref|YP_582670.1| two component transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93353312|gb|ABF07401.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Cupriavidus metallidurans CH34]
Length = 244
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R L + L G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 9 ILVVDDDPELRDLLREYLTSQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L K
Sbjct: 69 LRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125
>gi|254444474|ref|ZP_05057950.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198258782|gb|EDY83090.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 482
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ RR + L + Y + ++G A + + E ++L D++MP M G E
Sbjct: 8 TILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLEEHTPDVILLDVMMPGMSGFE 67
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ ++ IT LSKP +L + + +L +
Sbjct: 68 TCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKIELRSRIRSILRL 126
>gi|333008591|gb|EGK28059.1| phosphate regulon transcriptional regulatory protein PhoB [Shigella
flexneri VA-6]
Length = 229
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L D ++
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLLGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|318041885|ref|ZP_07973841.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 254
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ ++RR L L G+EV+ +NGA A + R L++ D++MPE+DG
Sbjct: 14 KILVADDEANIRRILETRLTMQGHEVLMASNGAEALELFRGSEPDLVVLDVMMPELDGFA 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ ++ +T VA + KPF ++L + ++ N
Sbjct: 74 VVERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRRAN 131
>gi|292670066|ref|ZP_06603492.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
gi|292648254|gb|EFF66226.1| DNA-binding response regulator [Selenomonas noxia ATCC 43541]
Length = 234
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RFL L G+E + NG AY+++ +E F ++L D+++P MDGIE
Sbjct: 12 RVLIVEDETRIARFLQMELEHEGFEAETEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + ++ ++ +T AV + ++KPF + +L+ + L ++
Sbjct: 72 ICRRVRAVT-NVPIIMLTAKDAVEDRVEGLDIGADDYITKPFAVPELIARLKNALRRRD 129
>gi|256059315|ref|ZP_05449517.1| Probable transcriptional regulator ycf27 [Brucella neotomae 5K33]
gi|261323274|ref|ZP_05962471.1| two-component system response regulator [Brucella neotomae 5K33]
gi|261299254|gb|EEY02751.1| two-component system response regulator [Brucella neotomae 5K33]
Length = 238
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + L + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-LTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|196228884|ref|ZP_03127750.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196227165|gb|EDY21669.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 229
Score = 149 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD M R L GY V + N+G + +L++ D+++P+++G
Sbjct: 5 ETILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGY 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R E ++ ++ +T + ++KPF +++L+ V L +
Sbjct: 65 EICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQ 123
>gi|302528403|ref|ZP_07280745.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302437298|gb|EFL09114.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 226
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +R + AL + G+ V + G K+RE L++ D+++P +DG E
Sbjct: 4 VLVIEDDASVREGMELALRRQGHTVHTAATGEDGVAKLRERAPDLVVLDLMLPGIDGFET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR L + ++ +T + + KP R L + +L
Sbjct: 64 CRRIRALG-QVPIIMLTARSDDFDVVAGLEAGADDYVVKPIEPRVLDARIRAVLRR 118
>gi|298528299|ref|ZP_07015703.1| two component transcriptional regulator, winged helix family
[Desulfonatronospira thiodismutans ASO3-1]
gi|298511951|gb|EFI35853.1| two component transcriptional regulator, winged helix family
[Desulfonatronospira thiodismutans ASO3-1]
Length = 232
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ ED++D++ L L AGY V +NG REE L++ D+++P M
Sbjct: 1 MKKSKILVIEDEEDIQNLLHINLEAAGYRVFLTDNGYDGLKIAREEQPELIILDLMLPHM 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ RR + D D+ V+ +T + + KPF +R+L+ + +
Sbjct: 61 DGLEVCRRLKKDDKLKDIIVIMVTAKSEEMDRVVGFELGADDYVVKPFSIRELLLRIKAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRE 124
>gi|330890495|gb|EGH23156.1| DNA-binding response regulator GltR [Pseudomonas syringae pv. mori
str. 301020]
Length = 237
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L +DD ++R L L +AG++V + +GA EEP LL+ D+++P+ DG L
Sbjct: 1 MLVDDDQEIRELLDTYLSRAGFQVRTVGDGADFRRAFNEEPSDLLILDVMLPDEDGFSLC 60
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + P + V+ +T + A L KPF R+L + LL
Sbjct: 61 KWIRQHPRQPHVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 117
>gi|296502499|ref|YP_003664199.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
gi|296323551|gb|ADH06479.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
Length = 232
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|260771990|ref|ZP_05880907.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
gi|260612857|gb|EEX38059.1| transcriptional regulator [Vibrio metschnikovii CIP 69.14]
Length = 240
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDARLRALLERYLSEQGFQVRSVANSEQMDRLLTRETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNLIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRRQ 123
>gi|241889083|ref|ZP_04776387.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
10379]
gi|241864332|gb|EER68710.1| transcriptional regulatory protein WalR [Gemella haemolysans ATCC
10379]
Length = 234
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + L L K GY+V+ N+G A + + L+L D+++P+
Sbjct: 1 MAEYKILVVDDEEPIANILEFNLKKEGYDVIVANDGEKAVELAFNDNPDLILLDLMLPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 DGMEVCREVRAK-KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|167754915|ref|ZP_02427042.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
gi|237735356|ref|ZP_04565837.1| two-component system response regulator [Mollicutes bacterium D7]
gi|167704965|gb|EDS19544.1| hypothetical protein CLORAM_00419 [Clostridium ramosum DSM 1402]
gi|229381101|gb|EEO31192.1| two-component system response regulator [Coprobacillus sp. D7]
Length = 233
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D+ ++R L L GY+V+ +G A D V + L + DI+MP ++G
Sbjct: 3 NNKILIVDDNPEIREVLNVLLSSEGYDVIEAKDGQEAIDMV-SDDIDLYILDIMMPIING 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++F+T + + LSKPF +L V LL
Sbjct: 62 YQACVEIRKK-SNAPILFLTAKGQESDKTLGFSSGGDDYLSKPFSYNELTTRVKALLRR 119
>gi|117621451|ref|YP_858400.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562858|gb|ABK39806.1| DNA-binding response regulator [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 240
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MNQ IL+ +D ++R L + L + G V +G + E F LL+ D++MP
Sbjct: 1 MNQSSTHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R L ++ +T L+KPF+ R+L+ + +
Sbjct: 61 GEDGLTLCRELRAK-SSLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAV 119
Query: 118 LTI 120
+
Sbjct: 120 MRR 122
>gi|70733391|ref|YP_263166.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas fluorescens Pf-5]
gi|330806802|ref|YP_004351264.1| phosphate regulon response regulator [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|68347690|gb|AAY95296.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas fluorescens Pf-5]
gi|327374910|gb|AEA66260.1| Phosphate regulon response regulator [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 229
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GIEL
Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCMEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|332705648|ref|ZP_08425724.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
gi|332355440|gb|EGJ34904.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
Length = 656
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + + AL Y+V +G + L+L D ++P++ GI+
Sbjct: 2 RILLVEDDEGIAKVVTAALASQHYQVDLATDGDEGIALAEILKYDLILLDWMLPKLTGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L ++ ++ +T ++ L KP + +L+ + +L +
Sbjct: 62 LCKQLRNARDRTPIILLTAQDTSTNKVEALDAGADDYLVKPLDIPELLARIRAVLRRSS 120
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD + L L G+++ N+ ++ + + LL+ D+ MPE GI+
Sbjct: 524 KLLIVDDDPQILDQLRTVLEPWGFQLTLLNDPQQFWETIEQCTPDLLILDVQMPEFSGID 583
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV-----NR 116
L + +L V+F++ + KP +L+ V
Sbjct: 584 LCQVVRNDPRWAELPVLFLSAAQDAETVQQVFMAGADDYVQKPIRAPELLARVLNRIERS 643
Query: 117 LLTIK 121
L ++
Sbjct: 644 QLRLR 648
Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE--M 59
+ ++L+ +DD + + L L EV + + A + ++L D+ P+
Sbjct: 397 SPRLLIVDDDLTLAQGLASELAAWKMEVEVAADISQARKAIARNRPDVVLLDLCFPDSAG 456
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G+EL P + V+ +T + A L KP + +++ + + L
Sbjct: 457 NGLELLAELKTTQPPVPVVVLTVKESFAERVRVARLGGRGFLRKPVAPQKVMDAIAKAL 515
>gi|312113933|ref|YP_004011529.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
gi|311219062|gb|ADP70430.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
Length = 239
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D D+R L K L K G V + A A ++ F LL+ DI+MP DG
Sbjct: 4 STHILVVDDHKDIRDLLAKFLVKHGMRVTVAADAAEARRHLKAGAFDLLVLDIMMPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L R + + ++F+T A ++KPF+ R+L+ + ++
Sbjct: 64 ISLCRDIRDSNS-APIIFLTAVAEDTDRIIGLELGADDYVTKPFNPRELLARIRAVIRR 121
>gi|209523400|ref|ZP_03271955.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
gi|209496142|gb|EDZ96442.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
Length = 438
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ IL +D+ L L GY+ +G A + P L+L DI+MP
Sbjct: 1 MSETKLHILWVDDEPANLVLLEDLLMAEGYDTTLAESGPRAIELATNNPPDLVLLDIMMP 60
Query: 58 EMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+M+G E+ R E D ++F+T ++KP +++ L+ +++
Sbjct: 61 DMNGFEVCDRLREHDILQTTPIIFLTALDDEESRLKGLEKMGDDYITKPINIKLLLAKIH 120
Query: 116 RLLTI 120
++ +
Sbjct: 121 NIIKL 125
>gi|239827082|ref|YP_002949706.1| response regulator receiver protein [Geobacillus sp. WCH70]
gi|239807375|gb|ACS24440.1| response regulator receiver protein [Geobacillus sp. WCH70]
Length = 166
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ M L L GY V C +G +A + L+L DI+MPEMDG E
Sbjct: 3 TILLVDDEKRMLDLLDLYLSPKGYHCVKCESGLAAIQYLENNKVDLVLLDIMMPEMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E D+ ++ +T ++KPF +L+ + +L
Sbjct: 63 TCQRIRE-FSDVPIIMVTARDQTLDIVKGLNIGADDYITKPFDEAELLARIEAVLRR 118
>gi|196036865|ref|ZP_03104252.1| DNA-binding response regulator [Bacillus cereus W]
gi|195990518|gb|EDX54499.1| DNA-binding response regulator [Bacillus cereus W]
Length = 254
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|121594708|ref|YP_986604.1| two component transcriptional regulator [Acidovorax sp. JS42]
gi|120606788|gb|ABM42528.1| two component transcriptional regulator, winged helix family
[Acidovorax sp. JS42]
Length = 235
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ + +G SA ++ ++L D ++P
Sbjct: 1 MKKLPRVLIVEDESPIAELVAVNLRHNGFQPIWAEDGESAQRELDAVLPDVILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G++LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLQLARKWRADSRTKQIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|72163309|ref|YP_290966.1| response regulator receiver [Thermobifida fusca YX]
gi|71917041|gb|AAZ56943.1| response regulator receiver [Thermobifida fusca YX]
Length = 230
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G SA + L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESYSDALSYLLRKEGFEVAVAPTGTSALEIFDRTGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRTLRQK-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|317498542|ref|ZP_07956836.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|316894235|gb|EFV16423.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 226
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
MN+ KIL+ +D+ MR+ + L +AGY+V+ +G A D +LL+ D++MP+
Sbjct: 1 MNELKILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSTKGINLLVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ + ++ + ++ +T + +SKPF + LV V +L
Sbjct: 61 MDGWEVVKEIRKV-SKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|300715486|ref|YP_003740289.1| two component heavy metal response transcriptional regulator
[Erwinia billingiae Eb661]
gi|299061322|emb|CAX58431.1| Two component heavy metal response transcriptional regulator
[Erwinia billingiae Eb661]
Length = 224
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ R ++ L ++GY V NG +E + L+L D++MPE+DG E
Sbjct: 2 KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGLFMAQEYHYDLILLDVMMPELDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+F+T + V L KPF +L+ + L
Sbjct: 62 VMKTLDAQ--NIPVIFLTAKSTVEDRIKGLELGADDYLVKPFSFAELLARIRTALRR 116
>gi|296156388|ref|ZP_06839226.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295892987|gb|EFG72767.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 268
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 25 KRILIVEDDVDIADVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 84
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 85 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 142
>gi|229179439|ref|ZP_04306792.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228603940|gb|EEK61408.1| Two-component response regulator [Bacillus cereus 172560W]
Length = 229
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD ++R+ + L GYE++ ++ A + +R L++ DI++P+MDG
Sbjct: 4 KEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + E + ++F++ ++KPF+ +L+ + L
Sbjct: 64 IEACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121
>gi|258510063|ref|YP_003183497.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257476789|gb|ACV57108.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 224
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+D+ +R + L + G+ VV +G A D V EP L + D++MPE+DG E
Sbjct: 3 TILVADDEPHIRELVRSTLEREGHRVVEAADGREAADAVAREPVQLAVIDVMMPEVDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D+ ++ +T + L KPF +LV V LL
Sbjct: 63 LTRWLREER-DVPILLLTALGETSHKVRGLRLGADDYLVKPFAPEELVARVEALLRR 118
>gi|254518244|ref|ZP_05130300.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226911993|gb|EEH97194.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 235
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ D+R + L GY +V ++G A +K+++E L++ DI+MP++DG
Sbjct: 7 NKTILVVDDEKDIREIIEIYLINEGYNIVLASDGIEALEKLKKEKIDLIILDIMMPKLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + E D + ++ ++ + + + KPF+ +LV V L
Sbjct: 67 IRTCIKIRE-DKKMPIIMLSAKSEDSDKILGLNIGADDYIIKPFNPLELVARVKSQLRR 124
>gi|70731962|ref|YP_261704.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
gi|68346261|gb|AAY93867.1| DNA-binding response regulator GltR [Pseudomonas fluorescens Pf-5]
Length = 243
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L + G++V S +GA + E P L++ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLETYLSRCGFQVRSTADGAGFRLALNEAPSDLVILDVMLPDEDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPKRSQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|298247032|ref|ZP_06970837.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297549691|gb|EFH83557.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 247
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + L G+ V N+G A V + L++ D ++P +DG+
Sbjct: 3 RVLVVEDEVAICNLICAELSAEGHTVYQANDGLQALTLVEQHQPQLIILDWMLPGLDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L+ + ++ +T +SKPF +R+L+ V +L
Sbjct: 63 VCRRVR-LNYLMPILMLTARNEEIDRILGLEVGADDYISKPFSMRELMARVRAILRR 118
>gi|253686544|ref|YP_003015734.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251753122|gb|ACT11198.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 232
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|228958269|ref|ZP_04119997.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228801428|gb|EEM48317.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 228
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|163814718|ref|ZP_02206107.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
gi|158450353|gb|EDP27348.1| hypothetical protein COPEUT_00869 [Coprococcus eutactus ATCC 27759]
Length = 225
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ ED++ + RF+ L GYEV +G + DK F L++ D+++P ++
Sbjct: 1 MAQKILIVEDEEKIARFVELELVHEGYEVEKAFDGRTGLDKALTGDFDLVVLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + V+ +T AV L+KPF + +L+ + L
Sbjct: 61 GLEVLRRIRKE-SVVPVIMLTARDAVMDKVSGLDAGADDYLTKPFAIEELLARIRVALKR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|145300860|ref|YP_001143701.1| OmpR family two-component response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142853632|gb|ABO91953.1| two-component system response regulator, OmpR family [Aeromonas
salmonicida subsp. salmonicida A449]
Length = 240
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MNQ IL+ +D ++R L + L + G V +G + E F LL+ D++MP
Sbjct: 1 MNQSSTHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + ++ +T L+KPF+ R+L+ + +
Sbjct: 61 GEDGLTLCRELRAK-SCMPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAV 119
Query: 118 LTIKN 122
+ N
Sbjct: 120 MRRTN 124
>gi|84387714|ref|ZP_00990730.1| Response regulator [Vibrio splendidus 12B01]
gi|84377397|gb|EAP94264.1| Response regulator [Vibrio splendidus 12B01]
Length = 242
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N +IL+ +DD ++R L + L K+G++V S +G ++ + L+L D+++P D
Sbjct: 4 NTRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R + ++ ++ +T + ++KPF R L+ + LL
Sbjct: 64 GFTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122
>gi|299538456|ref|ZP_07051739.1| response regulator protein [Lysinibacillus fusiformis ZC1]
gi|298726043|gb|EFI66635.1| response regulator protein [Lysinibacillus fusiformis ZC1]
Length = 233
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L G++V+ +G V++ L++ D++MP++DG
Sbjct: 3 NETILIVDDEKEIRNLISIYLKNEGFQVLEACDGEEGLQLVKKHKVHLIVLDLMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I++ + E+ ++ ++ +T + ++KPF+ +L+ + L
Sbjct: 63 IKMCMKVREV-AEMPIIMLTAKSQDMDKIGGLTIGADDYVTKPFNPLELIARIKSQLRR 120
>gi|285017066|ref|YP_003374777.1| two-component system regulatory protein phop [Xanthomonas
albilineans GPE PC73]
gi|283472284|emb|CBA14790.1| probable two-component system regulatory protein phop [Xanthomonas
albilineans]
Length = 227
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118
>gi|238024893|ref|YP_002909125.1| Two component transcriptional regulator [Burkholderia glumae BGR1]
gi|237879558|gb|ACR31890.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia glumae BGR1]
Length = 244
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV C NG ++ + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIANVLALHLRDERYEVVHCANGDDGLRRLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSMLELVARVKALLRR 122
>gi|228939020|ref|ZP_04101619.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228971901|ref|ZP_04132522.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978508|ref|ZP_04138885.1| Two-component response regulator vanR [Bacillus thuringiensis
Bt407]
gi|228781525|gb|EEM29726.1| Two-component response regulator vanR [Bacillus thuringiensis
Bt407]
gi|228787991|gb|EEM35949.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228820639|gb|EEM66665.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 243
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|253701540|ref|YP_003022729.1| transcriptional regulator [Geobacter sp. M21]
gi|251776390|gb|ACT18971.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M21]
Length = 234
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ + R + L + GY + +G A +KV+ E F L++ D+++P + G E+
Sbjct: 8 ILLVEDEMHLARGITFNLEQEGYLISHVESGEEALEKVKVEKFDLIILDVMLPGIGGFEV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R LD + V+ +T +A + A L KPF+L++ + V+ +L
Sbjct: 68 CERIRALDSRVPVLMLTARSAESDRIHGLAAGADDYLIKPFNLKEFLLRVSGMLRR 123
>gi|167039421|ref|YP_001662406.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|300915404|ref|ZP_07132717.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307725255|ref|YP_003905006.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|166853661|gb|ABY92070.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|300888464|gb|EFK83613.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307582316|gb|ADN55715.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
Length = 231
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI + +D+ + + L G+ V++ NG + D ++E L++ D+++P +
Sbjct: 1 MGKKIFVVDDEIKILEVVKSYLEHEGFSVITETNGNNVLDTFKKEKPDLVILDLMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + ++ ++ +T + + + ++KPF R+LV V +L
Sbjct: 61 GEELCKRLRQ-FSNVPILMLTAKVQESDKINGFSIGADDYITKPFSPRELVMRVKAILRR 119
>gi|255523352|ref|ZP_05390322.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296188286|ref|ZP_06856678.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255513006|gb|EET89276.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296047412|gb|EFG86854.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 225
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N+KIL+ +D+ +R+ + L + GY + +G A D E L++ D+++PE D
Sbjct: 3 NKKILVVDDEPLIRKLVTDFLKREGYITLEAEDGRKALDVFSSEKDIDLVILDVMLPEYD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T + ++KPF LV VN +L
Sbjct: 63 GWTVCREIRKK-SSTPIIMLTARGEEFDELFGFDIGADEYIAKPFSPNILVARVNAVLRR 121
>gi|148653890|ref|YP_001280983.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
gi|148572974|gb|ABQ95033.1| two component transcriptional regulator, winged helix family
[Psychrobacter sp. PRwf-1]
Length = 233
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE- 58
MN + IL+ ED+ +R ++ L AG+E + + + A+ +V + +++L D ++P
Sbjct: 1 MNIETILVVEDEPAIREMIVTTLEMAGFECLQAEDVSEAHSQVVDHRPAMILLDWMLPGN 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
GI+L RR EL ++ ++ +T ++KPF R+LV+ +
Sbjct: 61 QSGIDLCRRLKKDELLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKA 120
Query: 117 LLTIKN 122
+L +
Sbjct: 121 VLRRSS 126
>gi|322517438|ref|ZP_08070311.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
gi|322123920|gb|EFX95479.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
Length = 229
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + + +M +T ++ + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKNTYIMMMTARDSIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|307293714|ref|ZP_07573558.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Sphingobium chlorophenolicum L-1]
gi|306879865|gb|EFN11082.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Sphingobium chlorophenolicum L-1]
Length = 722
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ ++ L AG V G A + + L+L D++MP +DG
Sbjct: 13 RTVLIVDDNPANLGVIVDHLEDAGLHVSVAQGGEEALKRAQFIQPDLILLDVMMPGIDGF 72
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR E ++ V+F+T + + A +SKPF + +L+ V L +
Sbjct: 73 ETCRRLKANEATREIPVIFMTALDDIHDKVAAFAAGGVDYVSKPFQVEELLARVITHLEL 132
Query: 121 KN 122
++
Sbjct: 133 RS 134
>gi|285017381|ref|YP_003375092.1| two-component system regulatory protein phob [Xanthomonas
albilineans GPE PC73]
gi|283472599|emb|CBA15104.1| probable two-component system regulatory protein phob [Xanthomonas
albilineans]
Length = 229
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E V + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGDFEPVHAGDAREAQSLIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ELARR + + ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLELARRWRKDAMTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|256823309|ref|YP_003147272.1| two component transcriptional regulator PhoB, winged helix family
[Kangiella koreensis DSM 16069]
gi|256796848|gb|ACV27504.1| two component transcriptional regulator PhoB, winged helix family
[Kangiella koreensis DSM 16069]
Length = 230
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
MN K+L+ ED+ D+R L + +AGY+V + ++E ++L D ++P
Sbjct: 1 MNAKVLILEDERDIREMLAFCMQQAGYQVEQAATAERVFGLLKEGFVPDIMLVDWMLPGA 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+EL ++ + D+ V+ +T + KPF R+L+ V +
Sbjct: 61 SGVELTKKLKKDQKYQDVPVIMLTARGEEDDRVQGLEAGADDYVVKPFSPRELLARVQAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|303246847|ref|ZP_07333124.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
fructosovorans JJ]
gi|302491864|gb|EFL51744.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio
fructosovorans JJ]
Length = 668
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ R F ++AL K G++V + +G A + PF L+L DI MP ++G++
Sbjct: 546 RILLAEDEPVNRIFTVRALTKLGHQVETAVDGREALALLGRAPFDLVLMDIQMPRLNGLD 605
Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R L + V+ +T +A + + ++KPF ++LV + R L
Sbjct: 606 ATRMIRSGQVPGLSASIPVVALTAYAMDSDRERGLEAGMDEYVTKPFEPQELVAAMERAL 665
Query: 119 TIK 121
+
Sbjct: 666 RKE 668
>gi|293375811|ref|ZP_06622081.1| putative subtilin biosynthesis regulatory protein SpaR
[Turicibacter sanguinis PC909]
gi|325840818|ref|ZP_08167182.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
HGF1]
gi|292645588|gb|EFF63628.1| putative subtilin biosynthesis regulatory protein SpaR
[Turicibacter sanguinis PC909]
gi|325490188|gb|EGC92525.1| subtilin biosynthesis regulatory protein SpaR [Turicibacter sp.
HGF1]
Length = 226
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+ +DD ++ L AL GY V +N A +++ L++ D++MP D
Sbjct: 1 MSQKILVVDDDLEILEMLYDALNDEGYLVYKASNSFEARSQLKVN-PDLMILDVMMPGQD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + ++F+T + + A L+KPF LR+L V L
Sbjct: 60 GFEFCKEIRSVVS-CPIIFLTAKVSESDLIQGFAIGGDDYLTKPFSLRELRARVAAHLRR 118
>gi|126651117|ref|ZP_01723327.1| transcription response regulator-like protein [Bacillus sp. B14905]
gi|126591955|gb|EAZ86021.1| transcription response regulator-like protein [Bacillus sp. B14905]
Length = 220
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L Y + ++G ++ + F L+L D++MP ++
Sbjct: 1 MNYNILVVEDDLEIQELIKQFLMTQNYTIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A+ ++ ++F+T ++KPF L+ V +L
Sbjct: 61 GFEVAKMLRNQ-SNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|156742258|ref|YP_001432387.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
gi|156233586|gb|ABU58369.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
Length = 263
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ I++ +DD + + L GY V +G A ++ L+L D++MP M
Sbjct: 4 MSATIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQMAIIQPDLVLLDVMMPHMS 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + ++ +T A A + ++KP+ + L + L
Sbjct: 64 GWDICRQIRA-CSEAPIILLTAKDADADVINGLNAGADDYVTKPYRIAQLHARIEAALRR 122
>gi|111221291|ref|YP_712085.1| putative transcriptional regulator [Frankia alni ACN14a]
gi|111148823|emb|CAJ60501.1| Putative Transcriptional regulatory protein [Frankia alni ACN14a]
Length = 250
Score = 149 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L ++L GYEV + +GA A D V + +++ D++MP +DG+E
Sbjct: 9 RVLVVDDDAAVRESLERSLRFEGYEVTTAVDGADALDAVCRDQPDIVVLDVMMPRIDGLE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
R+ D+ V+ +T +A L KPF L +L
Sbjct: 69 TCRQLRARGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 115
>gi|309810882|ref|ZP_07704683.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
Ellin185]
gi|308435188|gb|EFP59019.1| KDP operon transcriptional regulatory protein KdpE [Dermacoccus sp.
Ellin185]
Length = 225
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ +DD + R L L G +V + G A + L++ D+ +P++D
Sbjct: 1 MSERVLVVDDDPTIARTLRINLKARGLDVETVGCGLDALSTCADAMPDLVVLDLGLPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + + V+ ++ ++ ++KPF + +L+ V L
Sbjct: 61 GVDVLRQLRQ-SSSVPVIVLSARQEADDKVEALDEGADDYVTKPFGIEELMARVRAALRR 119
>gi|182412431|ref|YP_001817497.1| two component transcriptional regulator [Opitutus terrae PB90-1]
gi|177839645|gb|ACB73897.1| two component transcriptional regulator, winged helix family
[Opitutus terrae PB90-1]
Length = 248
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +R + L + GY V+ +G A +++ E +L++ DI MP + G+
Sbjct: 15 ERILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGL 74
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E V+ ++ + V + + L+KPF+ +L+ + LL +
Sbjct: 75 AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKPFNQEELLARIRALLRRQ 133
>gi|170023656|ref|YP_001720161.1| two component transcriptional regulator [Yersinia
pseudotuberculosis YPIII]
gi|169750190|gb|ACA67708.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+DG +
Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGYK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++F++ +SKPF + ++ + ++
Sbjct: 62 VCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118
>gi|67460421|sp|Q99U73|ARLR_STAAN RecName: Full=Response regulator ArlR
Length = 214
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ ++ RFL L Y V + +G DK + L++ D+++P ++
Sbjct: 1 MTQ-ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|26987637|ref|NP_743062.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|148546183|ref|YP_001266285.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|167035477|ref|YP_001670708.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|170720155|ref|YP_001747843.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|24982318|gb|AAN66526.1|AE016281_7 DNA-binding response regulator ColR [Pseudomonas putida KT2440]
gi|13892068|gb|AAK39631.1| ColR [Pseudomonas putida]
gi|108936753|emb|CAK47552.1| ColR protein [Pseudomonas putida]
gi|148510241|gb|ABQ77101.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
gi|166861965|gb|ABZ00373.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
gi|169758158|gb|ACA71474.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
gi|313497270|gb|ADR58636.1| ColR [Pseudomonas putida BIRD-1]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|329957721|ref|ZP_08298196.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328522598|gb|EGF49707.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1348
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ ED+ D+RR+L LGK+ Y + NG A ++E+ L+LTD++MP MDG
Sbjct: 1100 KEKILIVEDNFDIRRYLSDELGKS-YHISEAGNGEEALALMKEQEADLILTDVMMPVMDG 1158
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + ++ ++ A + + + KPF + + ++ L
Sbjct: 1159 LQLCKQIKQNLRTCHIPIIILSAKADLKEQLEGLQVGADDYIPKPFSMAVITTKIRNLFR 1218
Query: 120 IK 121
+
Sbjct: 1219 TR 1220
>gi|237740054|ref|ZP_04570535.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
gi|294782859|ref|ZP_06748185.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
gi|229422071|gb|EEO37118.1| two-component response regulator czcR [Fusobacterium sp. 2_1_31]
gi|294481500|gb|EFG29275.1| DNA-binding response regulator [Fusobacterium sp. 1_1_41FAA]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ + K L K + V S NG A + + + L++ DI++P+++G E
Sbjct: 2 RILVVEDEKDLNNIITKHLKKNNFSVDSVFNGEEALEYLDYGTYDLIVLDIMLPKVNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E + V+ +T ++ L KPF +L+ + L+ K
Sbjct: 62 VIKKLRENKNETAVLMLTARDSIEDKIKGLDLGADDYLIKPFDFGELLARIRALVRRK 119
>gi|228927617|ref|ZP_04090669.1| Sensor histidine kinase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228832097|gb|EEM77682.1| Sensor histidine kinase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 242
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY++ +G A + L++ DI+MP+ +
Sbjct: 12 MNKNILIIDDDKEIVELLAVYLRNEGYKIYKAYDGDEALQMISTYEVDLMILDIMMPKRN 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 72 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 130
Query: 121 KN 122
+
Sbjct: 131 SS 132
>gi|227498000|ref|ZP_03928176.1| response regulator [Actinomyces urogenitalis DSM 15434]
gi|226832590|gb|EEH64973.1| response regulator [Actinomyces urogenitalis DSM 15434]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L YE C +GA A RE L+L D+++P +D
Sbjct: 1 MTTRILVVDDDTALAEMIGIMLESEHYEPFFCADGAQALATFREVNPHLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R D+ V+ +T ++KPF ++L+ V L
Sbjct: 61 GVEICRLIRAE-SDVPVIMLTARTDTQDVVAGLEAGADDYVTKPFKSKELLARVRTRLRR 119
>gi|85713650|ref|ZP_01044640.1| phosphate regulon transcriptional regulatory protein phoB
[Nitrobacter sp. Nb-311A]
gi|85699554|gb|EAQ37421.1| phosphate regulon transcriptional regulatory protein phoB
[Nitrobacter sp. Nb-311A]
Length = 234
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L AGYEV + G A ++E LL+ D ++P +
Sbjct: 1 MGARILVVEDEEALTTLLRYNLEAAGYEVETVARGDEADTGLKERIPDLLILDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR +L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKELPIIMLTARGEESERVRGLATGADDYVVKPFSVPELLARVKSLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|330446710|ref|ZP_08310362.1| phosphate regulon transcriptional regulatory protein PhoB
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490901|dbj|GAA04859.1| phosphate regulon transcriptional regulatory protein PhoB
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R L L + GY+ + + +A +K+ E L+L D ++P
Sbjct: 1 MVRRILVVEDEAPIREMLCFVLEQKGYQAIEAEDYDTALEKMCEPYPELILMDWMLPGGS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + EL + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GINLIKHLKRDELTRQIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELMARLKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|300867146|ref|ZP_07111811.1| response regulator receiver sensor signal transduction histidine
kinase [Oscillatoria sp. PCC 6506]
gi|300334847|emb|CBN56977.1| response regulator receiver sensor signal transduction histidine
kinase [Oscillatoria sp. PCC 6506]
Length = 461
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + +AL AGY+V +G A +V P L+L D++MP +DG E
Sbjct: 45 ILIVDDTPTNLDVISEALSNAGYKVAFATSGERALQQVERRPPDLILLDVMMPGIDGFET 104
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E D+ VMF+T A V ++KPF ++++ V L ++
Sbjct: 105 CKRLKANEKTCDIPVMFMTALADVDNKVKGLKLGAVDYVTKPFQEQEVLARVKTHLQLR 163
>gi|311744313|ref|ZP_07718117.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
gi|311312486|gb|EFQ82399.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272]
Length = 334
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+++ ED+ + + L + GY V +G D VR SL+L D+ +P +DG+E+
Sbjct: 112 VVVVEDEPAIADLVRLYLSRDGYGVHVERDGLRGLDAVRTLRPSLVLLDVGLPGIDGLEV 171
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D V+F+T ++KPF R+LV V +L
Sbjct: 172 CRRLRAADDWTPVLFVTARDDEVDRVVGLQLGADDYVTKPFSPRELVARVAAVLRR 227
>gi|256376590|ref|YP_003100250.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255920893|gb|ACU36404.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+ L L +AG+EV ++G ++ E SL+L DI +P +D
Sbjct: 1 MS-TVLVVEDEPDIALALRLNLERAGHEVRVASDGKQGLRELHESQPSLVLLDIGLPVLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R ++ D+ V+ +T A L+KPF ++L+ + +L
Sbjct: 60 GWMVLERIRDV-SDVPVLLLTAHGMEADKVRGLRGGADDYLTKPFSAKELLARIEAILRR 118
>gi|78221238|ref|YP_382985.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
GS-15]
gi|78192493|gb|ABB30260.1| PAS/PAC sensor hybrid histidine kinase [Geobacter metallireducens
GS-15]
Length = 508
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D+ D+ L L AGY +G A + + E + L+L DI MP +
Sbjct: 1 MNNLKILIVDDEADIALILKLQLEDAGYRTTRARDGLEALEMLAREHYDLILLDIRMPRL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ R + P+L V+ +T + + ++ +SKPF D+ V R +
Sbjct: 61 DGIEVLERIRQEWPELVVVMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAIE 120
>gi|228990099|ref|ZP_04150071.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
12442]
gi|228769627|gb|EEM18218.1| Two-component response regulator vanRB [Bacillus pseudomycoides DSM
12442]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L Y V ++G + ++ F L+L D++MP ++
Sbjct: 9 MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A+ ++ ++ +T ++KPF L+ V +L
Sbjct: 69 GFEVAKMIRSQ-SNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 127
>gi|219670685|ref|YP_002461120.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219540945|gb|ACL22684.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+LA+D++ +R + + + GY+ +GA A E L++ D++MP+++G +
Sbjct: 2 KIMLADDEESIRIVVEYIITEDGYDFCYAADGAEALAVFEAENPDLVILDVMMPKLNGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ ++ ++ + L KPF +L + LL ++
Sbjct: 62 VCAQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSSLELSLRIEALLRRRD 120
>gi|116750082|ref|YP_846769.1| two component transcriptional regulator [Syntrophobacter
fumaroxidans MPOB]
gi|116699146|gb|ABK18334.1| two component transcriptional regulator, winged helix family
[Syntrophobacter fumaroxidans MPOB]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ + + AL G+ V +G + + L++ DI +P+M
Sbjct: 1 MKPRVLIVEDEPAIVDNIQYALETEGFATVCLVSGEPVLTFLARDTVDLIILDIGLPDMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + + V+F+T ++KPF R+L V +L
Sbjct: 61 GMELCKEIRKSHS-TPVIFLTARTDEVDRVVGLEIGADDYVTKPFSPRELSARVRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 TH 121
>gi|322834089|ref|YP_004214116.1| two component transcriptional regulator PhoB, winged helix family
[Rahnella sp. Y9602]
gi|321169290|gb|ADW74989.1| two component transcriptional regulator PhoB, winged helix family
[Rahnella sp. Y9602]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + GY+ V + SA ++ E L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGYQAVEAEDFDSAIGQLVEPYPELILLDWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + L ++ VM +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKREALTREIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|315605837|ref|ZP_07880869.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312535|gb|EFU60620.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 234
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R L +L AG++VV+ +G+ A+ + +E L++ D+++P+MDG
Sbjct: 9 KLLVVDDEPNIRDLLASSLRFAGFDVVTAEDGSGAFHEAQESRPDLIVLDVMLPDMDGFT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T + ++KPF L ++V + +L
Sbjct: 69 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 125
>gi|228907707|ref|ZP_04071563.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
gi|228851940|gb|EEM96738.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|228936126|ref|ZP_04098931.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228823536|gb|EEM69363.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|228967929|ref|ZP_04128940.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228791796|gb|EEM39387.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229153018|ref|ZP_04281199.1| Two-component response regulator [Bacillus cereus m1550]
gi|228630438|gb|EEK87086.1| Two-component response regulator [Bacillus cereus m1550]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|126348166|emb|CAJ89887.1| putative two-component system response regulator [Streptomyces
ambofaciens ATCC 23877]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD +R + AL + G+EV + G + +R ++ D+++P M G+E
Sbjct: 3 RVLIIEDDRAVREGVRLALRRQGHEVAAAATGEDGLELLRSFRPDAVILDLMLPGMPGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ T + KP R L + +L
Sbjct: 63 VCRRIRAHH-QVPIIMATARGDDTDIVVGLEAGADDYVVKPVRARVLDARIRAVLRR 118
>gi|114797342|ref|YP_762221.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
gi|114737516|gb|ABI75641.1| DNA-binding response regulator [Hyphomonas neptunium ATCC 15444]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++D+R L + G+ + +G A K EE L++ D+ MP M+G E
Sbjct: 7 ILIVDDEEDLRETLAEQFELTDGFTAMVAASGEEALRKAAEERVDLVILDVDMPGMNGRE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R+ E + V+ +TG + + ++KPF L+ V L
Sbjct: 67 VCRQLREKGIRVPVIMLTGRSGESDTVAGLEAGANDYVAKPFSFAVLLARVRSQLR 122
>gi|332708948|ref|ZP_08428919.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
gi|332352490|gb|EGJ32059.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
Length = 373
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D D L L + GYE+ NG A +++ P L+L D++MPEMDG E+
Sbjct: 15 ILAVDDSPDNLFLLQTLLEEEGYEITLAENGRVALERIESSPPELVLLDVMMPEMDGFEV 74
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R P + ++ IT + + KP + +L+ V LL +K+
Sbjct: 75 TKRIRSNPKLPFIPILLITAY-DHPSVVKGLDMGADDFIRKPVEVDELLARVRSLLRLKH 133
>gi|238924384|ref|YP_002937900.1| response regulator [Eubacterium rectale ATCC 33656]
gi|238876059|gb|ACR75766.1| response regulator [Eubacterium rectale ATCC 33656]
Length = 257
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E
Sbjct: 33 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + + KV+ ++ +A + + KPFHL++L + L K
Sbjct: 93 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 150
>gi|190572650|ref|YP_001970495.1| putative two-component response regulator transcriptional regulator
[Stenotrophomonas maltophilia K279a]
gi|190010572|emb|CAQ44181.1| putative two-component response regulator transcriptional
regulatory protein [Stenotrophomonas maltophilia K279a]
Length = 239
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60
+++L+ EDD + L LG GY+V +G + + +E L+ D+++P +D
Sbjct: 3 TKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDAGLRLLEQEGPWDALVLDVMLPGVD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +RA + + ++ I+ + L+KPF + +LV V LL
Sbjct: 63 GLQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRR 122
>gi|206969330|ref|ZP_03230285.1| regulatory protein VanR [Bacillus cereus AH1134]
gi|206736371|gb|EDZ53529.1| regulatory protein VanR [Bacillus cereus AH1134]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD ++R+ + L GYE++ ++ A + +R L++ DI++P+MDG
Sbjct: 4 KEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNTTIDLIILDIMLPKMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + E + ++F++ ++KPF+ +L+ + L
Sbjct: 64 IEACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121
>gi|312792501|ref|YP_004025424.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312179641|gb|ADQ39811.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 217
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R+ + L K G+EV ++G A +K + +S+++ D+++P+ DG
Sbjct: 2 KILLIEDEEKLRKIIKLYLEKEGFEVEEVSDGNEAIEKFQPSMYSVVILDVMLPQKDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D D V+ +T + KP +++V V +L
Sbjct: 62 VLREIRKKD-DTPVIMLTARGEDDDKIFGFELGADDYVVKPVSPKEIVARVKAILKR 117
>gi|294776618|ref|ZP_06742087.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294449533|gb|EFG18064.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1441
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE
Sbjct: 1185 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1243
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1244 LIRHIKENVNTCDIPLIILSAKSSVEDRIQGLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1303
>gi|254163333|ref|YP_003046441.1| osmolarity response regulator [Escherichia coli B str. REL606]
gi|253975234|gb|ACT40905.1| osmolarity response regulator [Escherichia coli B str. REL606]
Length = 239
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYNILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|157150116|ref|YP_001450468.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
substr. CH1]
gi|157074910|gb|ABV09593.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
substr. CH1]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + +++ L++TDI+MP MD
Sbjct: 1 MEKTILLVDDEVDILDIQKRYLLQAGYQVLVAHDGLEGLELFKKKSVDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + L PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYLAPDQPFLFTTAKTSEQDRIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|154496426|ref|ZP_02035122.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
29799]
gi|150274509|gb|EDN01586.1| hypothetical protein BACCAP_00718 [Bacteroides capillosus ATCC
29799]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ ++ + L G+ V C GA A V E L + D+++P++
Sbjct: 1 MKANILVVDDEPEIADLVEVYLKSEGFTVFKCGTGADALQWVNRERLDLAILDVMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L V+ +T ++KPF+ +LV V L
Sbjct: 61 GFTLCGEIRREH-HFPVLMLTARTEDMDKITGLTIGADDYMTKPFNPLELVARVKAQLRR 119
>gi|239942785|ref|ZP_04694722.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239989244|ref|ZP_04709908.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
Length = 248
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA+A R+ ++ D+++P+MDG+
Sbjct: 22 RVLVVDDEAPLTELLSMALRYEGWEVRSAGDGAAAVRAARDFRPDAVVLDVMLPDMDGLA 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T AV ++KPF L ++V + L+
Sbjct: 82 VLGRLRREYADVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138
>gi|229592371|ref|YP_002874490.1| putative two-component system response regulator [Pseudomonas
fluorescens SBW25]
gi|312962826|ref|ZP_07777313.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
gi|229364237|emb|CAY51934.1| putative two-component system, response regulator [Pseudomonas
fluorescens SBW25]
gi|311282853|gb|EFQ61447.1| DNA-binding response regulator ColR [Pseudomonas fluorescens WH6]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVLRR 119
>gi|229043663|ref|ZP_04191369.1| Two-component response regulator vanR [Bacillus cereus AH676]
gi|228725650|gb|EEL76901.1| Two-component response regulator vanR [Bacillus cereus AH676]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|229105451|ref|ZP_04236094.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228678007|gb|EEL32241.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|218440560|ref|YP_002378889.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218173288|gb|ACK72021.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 246
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAISELVSINLEMAGYDVNQAEDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ ++ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDDRTSDIPILMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|206969897|ref|ZP_03230851.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228955094|ref|ZP_04117109.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229048515|ref|ZP_04194077.1| Two-component response regulator [Bacillus cereus AH676]
gi|229072320|ref|ZP_04205524.1| Two-component response regulator [Bacillus cereus F65185]
gi|229082069|ref|ZP_04214555.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|229112277|ref|ZP_04241816.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229181134|ref|ZP_04308466.1| Two-component response regulator [Bacillus cereus 172560W]
gi|206735585|gb|EDZ52753.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228602325|gb|EEK59814.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228671117|gb|EEL26422.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228701238|gb|EEL53738.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228710745|gb|EEL62716.1| Two-component response regulator [Bacillus cereus F65185]
gi|228722831|gb|EEL74214.1| Two-component response regulator [Bacillus cereus AH676]
gi|228804604|gb|EEM51208.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|15840004|ref|NP_335041.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
CDC1551]
gi|13880147|gb|AAK44855.1| DNA-binding response regulator TcrA [Mycobacterium tuberculosis
CDC1551]
Length = 247
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 18 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 78 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 134
>gi|330827912|ref|YP_004390864.1| winged helix family two component transcriptional regulator
[Aeromonas veronii B565]
gi|328803048|gb|AEB48247.1| Two component transcriptional regulator, winged helix family
[Aeromonas veronii B565]
Length = 240
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MNQ IL+ +D ++R L + L + G V +G + E F LL+ D++MP
Sbjct: 1 MNQGNTHILVVDDHSEIRDLLKRFLEQHGLRVSCARDGKEMKRLLEEREFDLLVLDLMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + +L ++ +T L+KPF+ R+L+ + +
Sbjct: 61 GEDGLTLCRELR-VKSNLPIIMLTAMGEETDRIIGLEMGADDYLAKPFNPRELLARIKAV 119
Query: 118 LTI 120
+
Sbjct: 120 MRR 122
>gi|254883604|ref|ZP_05256314.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254836397|gb|EET16706.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1446
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE
Sbjct: 1190 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1248
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1249 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1308
>gi|212703723|ref|ZP_03311851.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
gi|212672875|gb|EEB33358.1| hypothetical protein DESPIG_01771 [Desulfovibrio piger ATCC 29098]
Length = 254
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN I + +DD+++R L L + G+ + N + R P SL++ DI++P
Sbjct: 1 MNTIHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G+EL R + V+F+T + LSKPF R+L+ + +L
Sbjct: 61 MNGLELFRNLRAE-STVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|157146486|ref|YP_001453805.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
gi|157083691|gb|ABV13369.1| hypothetical protein CKO_02246 [Citrobacter koseri ATCC BAA-895]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD D+ L L GY + +G A + +P+ ++ D+++P +D
Sbjct: 1 MKQ-ILLVEDDHDIAALLRLNLEDEGYAITHQPDGGKALQCLETQPWDAVILDLMLPNVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L
Sbjct: 60 GLEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|254975257|ref|ZP_05271729.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255092647|ref|ZP_05322125.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255314384|ref|ZP_05355967.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255517062|ref|ZP_05384738.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255650166|ref|ZP_05397068.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260683289|ref|YP_003214574.1| two-component response regulator [Clostridium difficile CD196]
gi|260686885|ref|YP_003218018.1| two-component response regulator [Clostridium difficile R20291]
gi|306520160|ref|ZP_07406507.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|260209452|emb|CBA62960.1| two-component response regulator [Clostridium difficile CD196]
gi|260212901|emb|CBE04143.1| two-component response regulator [Clostridium difficile R20291]
Length = 233
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ ++ + L G+ V G A + + + + + DI++P++D
Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKDLDMAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFHICQKIREKYYY-PIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|89097843|ref|ZP_01170730.1| two-component response regulator [Bacillus sp. NRRL B-14911]
gi|89087345|gb|EAR66459.1| two-component response regulator [Bacillus sp. NRRL B-14911]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++DMR + L AG+ G +++++ L+L DI+MP DG +
Sbjct: 9 ILIVDDEEDMRHLIGMYLENAGFSCRYAAGGKETLEEIQKNLPDLILLDIMMPGEDGFSV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ V+F++ + KPF +L ++ +L
Sbjct: 69 CERVRAQY-EVPVIFLSAKGEEWDKVKGLQIGGDDYIVKPFSPGELTARIHAVLRR 123
>gi|121605441|ref|YP_982770.1| osmolarity response regulator [Polaromonas naphthalenivorans CJ2]
gi|120594410|gb|ABM37849.1| two component transcriptional regulator, winged helix family
[Polaromonas naphthalenivorans CJ2]
Length = 245
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L + G++V+ + + + + L++ D++MP DG+
Sbjct: 12 KILILDDDARIRDLLRRYLAQEGFDVILAEDSKALNRIMLRDAVDLIVLDLMMPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ +T L+KPF+ R+L+ ++ +L +
Sbjct: 72 ICRRLRAANDRTPIIMLTAKGEDVDRIVGLEVGADDYLAKPFNPRELLARIHAVLRRR 129
>gi|289548094|ref|YP_003473082.1| transcriptional regulator [Thermocrinis albus DSM 14484]
gi|289181711|gb|ADC88955.1| two component transcriptional regulator, winged helix family
[Thermocrinis albus DSM 14484]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 63/117 (53%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + +++ L G+ V +G +A +V EE + L++ DI++P+ DG++
Sbjct: 3 RILLVEDDLYLGQMMVEGLRHEGFTVEWVQDGFTALRRVVEENYDLVILDIMLPKFDGMK 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E D+ V+ +T + + + + ++KPF ++L + +L
Sbjct: 63 VCRKIRE-TKDIPVIMVTARSQIEDKVEGLSAGADDYITKPFSFKELSARIQAVLRR 118
>gi|238923708|ref|YP_002937224.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
gi|238875383|gb|ACR75090.1| hypothetical protein EUBREC_1330 [Eubacterium rectale ATCC 33656]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD+ +R L L GY + ++G K F LL+ DI+MP + GIE
Sbjct: 3 KLLIIEDDETIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++F+T + ++ + L KPF +L+ + L+
Sbjct: 62 VCRRIREK-SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRR 117
>gi|227113247|ref|ZP_03826903.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTALLKELLEMEGFNVVVAYDGEQALQVL-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|150002960|ref|YP_001297704.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931384|gb|ABR38082.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1440
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE
Sbjct: 1184 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1242
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1243 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1302
>gi|148550486|ref|YP_001270588.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148514544|gb|ABQ81404.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 240
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+Q I + +D D+R + + L + GY + +G + + L++ D++MP DG
Sbjct: 4 SQHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + V+F++ L KPF+ R+L+ V LL
Sbjct: 64 LSLCRHIRSR-SNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRR 121
>gi|296503090|ref|YP_003664790.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
gi|296324142|gb|ADH07070.1| two-component response regulator vanR [Bacillus thuringiensis
BMB171]
Length = 248
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A KV L++ DI+MP+ +
Sbjct: 18 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQKVSTYEVDLMILDIMMPKRN 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 78 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 136
Query: 121 KN 122
+
Sbjct: 137 SS 138
>gi|293371962|ref|ZP_06618363.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
SD CMC 3f]
gi|292633080|gb|EFF51660.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
SD CMC 3f]
Length = 248
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 23 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + +P++ ++ +T + D + KPF R+L + LL
Sbjct: 83 LAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 139
>gi|218233819|ref|YP_002367876.1| regulatory protein VanR [Bacillus cereus B4264]
gi|218161776|gb|ACK61768.1| regulatory protein VanR [Bacillus cereus B4264]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD ++R+ + L GYE++ ++ A + +R + L++ DI++P+MDG
Sbjct: 4 KEKILIVDDDIEIRKIVSIYLKNEGYEIIDASDAIEALETLRNKTIDLIILDIMLPKMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + E + ++F++ ++KPF+ +L+ + L
Sbjct: 64 IEACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121
>gi|254488622|ref|ZP_05101827.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. GAI101]
gi|214045491|gb|EEB86129.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. GAI101]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ R L L GY+V NG A V E L++ D +MP + GIE+
Sbjct: 8 ILLVEDEPAQREVLAYNLESEGYDVRRAENGEEAMLLVAEALPDLVILDWMMPLLSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E ++ V+ ++ + + KP+ +R+L+ V L
Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDAVRGLETGADDYVVKPYSMRELMARVRTQLRR 125
>gi|169827681|ref|YP_001697839.1| transcription response regulator-like protein [Lysinibacillus
sphaericus C3-41]
gi|168992169|gb|ACA39709.1| transcription response regulator-like protein [Lysinibacillus
sphaericus C3-41]
Length = 220
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L Y + ++G ++ + F L+L D++MP ++
Sbjct: 1 MNYNILVVEDDLEIQELIKQFLMTQNYNIEVASDGVEGIKRLNTQSFDLILLDVMMPNLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A+ ++ ++F+T ++KPF L+ V +L
Sbjct: 61 GFEVAKMLR-NHSNIPIIFLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVQAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|149914856|ref|ZP_01903385.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. AzwK-3b]
gi|149811044|gb|EDM70881.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. AzwK-3b]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L G+ V + NG A V E +++ D ++P + GIE+
Sbjct: 8 VLLVEDEPAQREVLSYNLEADGFRVTTAENGEEALLLVDEAAPDIIVLDWMLPNVSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ ++ ++ + + KP+ + +L+ V LL
Sbjct: 68 CRQLKTRADTRNVPILMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRALLRR 125
>gi|153855183|ref|ZP_01996367.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
gi|149752352|gb|EDM62283.1| hypothetical protein DORLON_02381 [Dorea longicatena DSM 13814]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + LG+ GY+V+ +G A + E+ +L++ D++MP
Sbjct: 1 MDKIKILVVDDESRMRKLVKDFLGREGYQVLEAGDGMEAMEVFYDEKDIALIILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + + ++ +T + A + +SKPF + LV VN +L
Sbjct: 61 MDGWQVCREVRQ-SSKVPIIMLTARSEERDELQGFALGVDEYISKPFSPKILVARVNAIL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRAN 123
>gi|126031096|pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V + SA +++ E L+L ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|89902408|ref|YP_524879.1| two component transcriptional regulator [Rhodoferax ferrireducens
T118]
gi|89347145|gb|ABD71348.1| two component transcriptional regulator, winged helix family
[Rhodoferax ferrireducens T118]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++ IL+ +D+ ++RR L+ L + +E V+ +G + + L++ D+++P+
Sbjct: 1 MEKRDCILIVDDEPEIRRLLVDYLMRNNFEAVAARDGREMWQALDRHAIDLVVLDLMLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R +L V+ +T L KPF R+L+ + +L
Sbjct: 61 TDGLSLCRELRAK-SNLPVLMLTALGEETDRIVGIEMGADDYLVKPFSPRELLARIKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|50123231|ref|YP_052398.1| DNA-binding transcriptional regulator CpxR [Pectobacterium
atrosepticum SCRI1043]
gi|49613757|emb|CAG77208.1| two-component response regulator [Pectobacterium atrosepticum
SCRI1043]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV +G A V + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALQIV-DNTIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|134299753|ref|YP_001113249.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134052453|gb|ABO50424.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D++ +R + L K G+EV +NG D ++ F +++ DI++P DG+
Sbjct: 3 KLLIVDDEEKIRNLIKVYLVKEGFEVDELDNGNRVVDSIKSSHFDMVVLDIMLPGPDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ ++ ++ +T + KPF R+LV +N +L
Sbjct: 63 LCKEIRKI-SNIPIIMLTAKGDEIDRIIGLEVGADDYIVKPFSPRELVARINAILRR 118
>gi|333030003|ref|ZP_08458064.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
gi|332740600|gb|EGJ71082.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
Length = 242
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + L + GY+V + +G + + + ++++DI++P + G E
Sbjct: 17 KILVVEDEVRVADLIKRGLEEVGYKVDAAYDGQQGLNLFQNNSYHMIISDIILPHISGFE 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ +D ++ ++ +T + + KPF R+L + LL
Sbjct: 77 LCQKIRLIDKNIPILMLTALGTTDDKLEGFDAGADDYMVKPFDFRELDARIKVLLKR 133
>gi|328954969|ref|YP_004372302.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
gi|328455293|gb|AEB06487.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + + L GYEV C +G+ A + + F L + DI++P++D
Sbjct: 1 MDTHILVVDDEKTITDLVGIYLENEGYEVTLCYSGSDAARAIFSQEFDLAVLDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R D V+ +T + + + KPF +LV V L
Sbjct: 61 GFELLRTIRA-DRTYPVIMLTARDTQIDKIEGLSLGADDYVVKPFRPLELVARVKAQLRR 119
>gi|302384891|ref|YP_003820713.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302195519|gb|ADL03090.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ I L+ +D+ ++ + L GY+V NN + + L+L DI+MP
Sbjct: 1 MSETISILVVDDEKEIADLVEIYLVSDGYKVYKANNAEEGLGVLEKNQIHLVLLDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+++ ++ E + ++ ++ ++ + ++KPF+ +L V L
Sbjct: 61 MDGLQMCKKIRETN-NIPIIMLSAKSTDLDKILGLGTGADDYVTKPFNPLELTARVKSQL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|296159560|ref|ZP_06842384.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295890268|gb|EFG70062.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 245
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD +R + L G++V + +G + ++++E +L++ DI+MPE+D
Sbjct: 1 MNPSILVVDDDPVVRELVSGYLQGRGFKVDTLEHGMALQRQLQDERPALIVLDIMMPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI R D+ V+ +T A L KPF +LV + +L
Sbjct: 61 GISALRALRVAGDDIPVILLTARADPIDRVIGLELGADDYLGKPFEPSELVARIRTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|228927049|ref|ZP_04090115.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229121535|ref|ZP_04250762.1| DNA-binding response regulator [Bacillus cereus 95/8201]
gi|228661999|gb|EEL17612.1| DNA-binding response regulator [Bacillus cereus 95/8201]
gi|228832784|gb|EEM78355.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 68 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|229169264|ref|ZP_04296976.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH621]
gi|228614205|gb|EEK71318.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH621]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|328882847|emb|CCA56086.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 238
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 14 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMD 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 73 GLEVARRLRAEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 132
>gi|312962809|ref|ZP_07777296.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311282836|gb|EFQ61430.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 244
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +DD ++R L L +AG++V +GA + E P L++ D+++P+ DG
Sbjct: 5 SKSILLVDDDQEIRELLQTYLSRAGFQVRGVPDGAGFRQAMNEAPCDLVILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + + ++ +T + A + KPF R+L + LL
Sbjct: 65 FSLCRWIRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYIGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|310641768|ref|YP_003946526.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphop [Paenibacillus polymyxa SC2]
gi|309246718|gb|ADO56285.1| Alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Paenibacillus polymyxa SC2]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R + L G EVV +G A E LL+ DI+MP MD
Sbjct: 1 MT-RVLVVDDDPHIRELVGHFLRLEGLEVVEAVDGLDAMRLFDETKVDLLVLDIMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ E DL ++ +T + A L KPF LV V LL
Sbjct: 60 GWELCRKLREQT-DLPLLMLTAKGETSQIVKGFALGTDDYLVKPFDPMVLVARVKALLKR 118
>gi|229096388|ref|ZP_04227360.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
gi|229102503|ref|ZP_04233209.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
gi|228680893|gb|EEL35064.1| Two-component response regulator vanR [Bacillus cereus Rock3-28]
gi|228686950|gb|EEL40856.1| Two-component response regulator vanR [Bacillus cereus Rock3-29]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G+ V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDLDIVQFINVNLTQEGFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKYS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|126658592|ref|ZP_01729739.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
gi|126620179|gb|EAZ90901.1| OmpR subfamily protein [Cyanothece sp. CCY0110]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L + +E +S +G +A D +++ L++ D+++P++DG+E
Sbjct: 2 KILIVEDEMEISKLIQTTLERESFECISAYDGLTALDLFQQQAPDLIVLDLMLPKLDGLE 61
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + D ++ +T + L KPF +LV V LL
Sbjct: 62 VCTRIRQKLTEKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120
>gi|156740840|ref|YP_001430969.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156232168|gb|ABU56951.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD + L +AGY+V+ +G S V + L+L D++MP+ +G ++
Sbjct: 3 ILVADDDLPNVKLTAFLLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ D+ ++F++ + + L KPF +L+ V +L +N
Sbjct: 63 CRQIR-RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119
>gi|160878177|ref|YP_001557145.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160426843|gb|ABX40406.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + RF+ L GY V N+G S +K + L+L D+++P + GIE
Sbjct: 3 KILIVEDEVKIARFVELELKYEGYTVDIANDGRSGLEKALKSDIDLVLLDVMLPGLSGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR ++ + ++ +T V ++KPF + +L+ + L+ +
Sbjct: 63 VCRRIR-MESQVPIIMLTAKDDVTDKVAGLDMGADDYMTKPFAIEELLARIRVALSRHS 120
>gi|77460594|ref|YP_350101.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77384597|gb|ABA76110.1| putative two-component response regulator [Pseudomonas fluorescens
Pf0-1]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL +DD ++R L L +AG++V + +GA + E P L++ D+++P+ DG
Sbjct: 5 NKSILLVDDDQEIRELLETYLTRAGFQVRATADGAGFRQALNEAPSDLVILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWVRQHPRQAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|330466987|ref|YP_004404730.1| response regulator receiver modulated diguanylate cyclase
[Verrucosispora maris AB-18-032]
gi|328809958|gb|AEB44130.1| response regulator receiver modulated diguanylate cyclase
[Verrucosispora maris AB-18-032]
Length = 326
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD+D+ RF+ L G++V+ ++G A + + + L + D++MP +DG+EL
Sbjct: 11 ILVVDDDEDIARFVEFNLRLHGFDVMLASDGQEALELIERQRPDLAVVDLMMPRIDGLEL 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + L V+ +T + + L KPF +L+ V L
Sbjct: 71 TRRLRADPMTAVLPVIMLTAKGMTQDKVNGLSAGADDYLVKPFDTLELLARVTSTLRR 128
>gi|295691207|ref|YP_003594900.1| winged helix family two component transcriptional regulator
[Caulobacter segnis ATCC 21756]
gi|295433110|gb|ADG12282.1| two component transcriptional regulator, winged helix family
[Caulobacter segnis ATCC 21756]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K GY V +G A E L++ D ++P++
Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVAVAGDGEEALTLASERAPDLVILDWMLPKVS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR ++ ++ +T + + KPF + +L V ++
Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMVELTARVRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|205372857|ref|ZP_03225666.1| DNA-binding response regulator [Bacillus coahuilensis m4-4]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++DM+ + + GYE V +N SA +++R L+L DI+MP DG +
Sbjct: 3 RLLIIDDEEDMQHLIGLYIQNGGYETVFASNSESALEQMRRHEIDLVLLDIMMPGKDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ V+F++ + KPF +L+ + +L
Sbjct: 63 VCEEICSEY-DVPVIFLSAKGEEWDKVKGLKLGADDYIVKPFSPGELLARIEAVLRR 118
>gi|307152178|ref|YP_003887562.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306982406|gb|ADN14287.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD + + + L Y V +G A++ V + L+L D+++P++DGI
Sbjct: 2 KILLVEDDVSIAEAIEEDLSDQHYLVEVAYDGQEAWELVDVFEYDLILLDVMLPKIDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ ++ IT V L KPF L++L V L+ N
Sbjct: 62 LCRKFRSRGCQTPILMITARDTVTDRVLGLDAGADDYLVKPFALQELSARVRALMRRGN 120
>gi|256015256|ref|YP_003105265.1| transcriptional regulatory protein OmpR, putative [Brucella microti
CCM 4915]
gi|255997916|gb|ACU49603.1| transcriptional regulatory protein OmpR, putative [Brucella microti
CCM 4915]
Length = 238
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|229119933|ref|ZP_04249189.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
gi|228663526|gb|EEL19110.1| hypothetical protein bcere0016_2530 [Bacillus cereus 95/8201]
Length = 237
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + +G A + +S+++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>gi|262193593|ref|YP_003264802.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
gi|262076940|gb|ACY12909.1| two component transcriptional regulator, winged helix family
[Haliangium ochraceum DSM 14365]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN +IL+A+D+ ++R + AL + GY V + +G SA ++ L++ D++MPE+
Sbjct: 1 MNPARILVADDESNIRDVVQYALERDGYRVETAADGQSALARIEAGGIDLVILDVLMPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L R+ E D+ ++F++ + A ++KPF R+L V +L
Sbjct: 61 DGLNLCRKLRERG-DVPIIFLSSRSEEADRILGLELGGDDYVTKPFSPRELATRVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|218134956|ref|ZP_03463760.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
43243]
gi|217990341|gb|EEC56352.1| hypothetical protein BACPEC_02861 [Bacteroides pectinophilus ATCC
43243]
Length = 239
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E
Sbjct: 15 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + + KV+ ++ +A + + KPFHL++L + L K
Sbjct: 75 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132
>gi|168184947|ref|ZP_02619611.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237795402|ref|YP_002862954.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182672001|gb|EDT83962.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229263740|gb|ACQ54773.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 221
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD D++ + + L ++GY V +G A + RE F L++ D+++P++D
Sbjct: 1 MPKKILVVEDDFDIQTIISEVLKESGYLVEEATDGLMAVEMFREGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMRGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|119493971|ref|ZP_01624531.1| Two Component Transcriptional Regulator, LuxR family protein
[Lyngbya sp. PCC 8106]
gi|119452292|gb|EAW33488.1| Two Component Transcriptional Regulator, LuxR family protein
[Lyngbya sp. PCC 8106]
Length = 246
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L + + V N ++ +++ L++TDI+MPE+DG +
Sbjct: 21 RLLLVDDEPGLREAVQAYLEDSDFTVDVAGNAREGWELLQQNLPDLVITDIMMPEVDGYQ 80
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E L L V+F+T LSKPF +LV V LL +
Sbjct: 81 FLKQMREDPLFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVVIVKNLLERR 140
>gi|299536678|ref|ZP_07049990.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
gi|298728162|gb|EFI68725.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+LL EDD + R + L + GY V G + +PF L+L D ++PEMD
Sbjct: 1 MKEKLLLIEDDTAIGRIVKDTLEQEGYYVTWSTTGLEGLADFQTQPFDLVLVDWMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + D+ ++ ++ A + ++KPF L +L V L
Sbjct: 61 GLTVCQNIR-WESDVPILMMSARKEDADKVEGLQ-GADDYIAKPFSLEELKARVASHLRR 118
>gi|293190389|ref|ZP_06608821.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
F0309]
gi|292820973|gb|EFF79928.1| DNA-binding response regulator PhoP [Actinomyces odontolyticus
F0309]
Length = 240
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R L +L AG++V++ +G+ A+ + + L++ D+++P+MDG
Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T + ++KPF L ++V + +L
Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131
>gi|260427208|ref|ZP_05781187.1| phosphate regulon transcriptional regulatory protein PhoB
[Citreicella sp. SE45]
gi|260421700|gb|EEX14951.1| phosphate regulon transcriptional regulatory protein PhoB
[Citreicella sp. SE45]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V + NG A + EE +++ D ++P + GIE
Sbjct: 7 TVLVVEDEAAQREVLRYNLEAEGFRVAAAGNGEEALMMMDEESPDVIVLDWMLPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ ++ + + KP+ LR+L+ V L
Sbjct: 67 VCRQIKTRPETRGVPVIMLSARSEEVDRIRGLETGADDYVVKPYSLRELMARVRAQLRR 125
>gi|67921796|ref|ZP_00515313.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67856388|gb|EAM51630.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 223
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L L GY V ++G Y + + LL+ D ++P G+
Sbjct: 2 KILLVDDEAELTEPLYHVLSHEGYNVDVADDGQKGYQLALQNTYDLLILDWMLPGKPGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICRELRSRGKTTPVLFLTAKDTLDDRVMGLDAGADDYLVKPFELRELMARVRALLRR 118
>gi|113477889|ref|YP_723950.1| two component LuxR family transcriptional regulator [Trichodesmium
erythraeum IMS101]
gi|110168937|gb|ABG53477.1| two component transcriptional regulator, LuxR family [Trichodesmium
erythraeum IMS101]
Length = 233
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+Q KILL +D+ +R + L + + V +N +D + + L++TD++MP
Sbjct: 1 MSQVSGKILLVDDEPGLREAVQAYLEDSHFNVDVASNANEGWDILEKNLPDLVITDVMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++DG + ++ E L V+F+T LSKPF +LV VN
Sbjct: 61 QVDGYQFLQKLREEPRFKALPVVFLTAKGMTTDRIQGYQAGCDAYLSKPFDPEELVAIVN 120
Query: 116 RLLTIK 121
LL +
Sbjct: 121 NLLERR 126
>gi|331091983|ref|ZP_08340815.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402882|gb|EGG82449.1| hypothetical protein HMPREF9477_01458 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED++ + L +G+EV N+G K E ++L++ D+++P +D
Sbjct: 1 MN-KILIVEDEEAIADLEKDYLELSGFEVEVANDGEMGLSKALGEDYNLIILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + ++ I+ ++KPF +LV V L
Sbjct: 60 GFEICRRVRDE-KNTPIIMISAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|326802533|ref|YP_004320352.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
gi|326553297|gb|ADZ81682.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
Length = 236
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+ILL ED++ + + L GY+V + +G A K +EE F+L++ D+++PE+DG
Sbjct: 4 KQRILLVEDEEHLLEAIKLNLELEGYKVTTATDGKKALKKFKEERFNLIILDVMIPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++A + ++ +MF+T L KPF+L +L+ V L+
Sbjct: 64 FQVAETIRLENTEVPIMFLTAKNTSEDRITGLKKGADDYLVKPFNLEELILRVGNLVRR 122
>gi|325843788|ref|ZP_08168030.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
gi|325489284|gb|EGC91662.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++R + L G E + +NG A D ++ L+L D++MP+MDGI
Sbjct: 5 RVLVVDDEREIREAIRIYLRGEGIETIMASNGEEALDLMKTNEIHLILMDVMMPKMDGIV 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ ++ +T + + ++KPF+ +LV V L
Sbjct: 65 TTSLIRE-FSNVPIIMLTAKSEDTDKIMGLSLGADDYITKPFNPMELVARVKSQLRR 120
>gi|300774464|ref|ZP_07084327.1| response regulator [Chryseobacterium gleum ATCC 35910]
gi|300506279|gb|EFK37414.1| response regulator [Chryseobacterium gleum ATCC 35910]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI+L ED+ + F+ K L + GYE+ +G + V+ F L++ DI++PEM+G+
Sbjct: 2 KKIILIEDETSVVSFIKKGLQENGYEISVAFDGRTGVQLVQANDFDLVILDIMLPEMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + + + ++F+T L KPF +LV V LL N
Sbjct: 62 DVCKEIRKTNQSVPILFLTALGTSENIVLGLESGGDDYLVKPFKFIELVARVKSLLRRSN 121
>gi|154507916|ref|ZP_02043558.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
17982]
gi|153797550|gb|EDN79970.1| hypothetical protein ACTODO_00401 [Actinomyces odontolyticus ATCC
17982]
Length = 240
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R L +L AG++V++ +G+ A+ + + L++ D+++P+MDG
Sbjct: 15 KLLVVDDEPNIRDLLASSLRFAGFDVITAEDGSGAFHEAQASRPDLIVLDVMLPDMDGFT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T + ++KPF L ++V + +L
Sbjct: 75 VTRRLRDAGITTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 131
>gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.]
Length = 1155
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 63/114 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+D+ MR L + L + + V +G+ A D ++ +P+ L+L DI+MP MDG+E
Sbjct: 191 HILVADDELVMRDSLKEWLTEERFSVDMAASGSEALDMLKAKPYDLMLLDIMMPGMDGVE 250
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ ++A E DL V+ +T +A V ++ L KPF+ L + R+
Sbjct: 251 VLQKAKENFADLNVIMMTAYATVETAVEAMKKGAMDYLVKPFNPDALTPMILRI 304
>gi|253577302|ref|ZP_04854620.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843306|gb|EES71336.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
Length = 241
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ ED+ + R L L GYEV+ ++G Y+ + F L+L D+++P M+
Sbjct: 1 MTQRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + V+ +T A ++KPF + +L+ V +L
Sbjct: 61 GFEIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR 120
>gi|262199700|ref|YP_003270909.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
gi|262083047|gb|ACY19016.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
Length = 397
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ L + L + GY V+ +G+ A + ++L D++MP +DG E
Sbjct: 22 VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASRIQPDIILLDVMMPGIDGFET 81
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR--LLTI 120
R+ D+ ++F+T + ++KPF R+++ V +L
Sbjct: 82 CRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVLARVRTHVVLRR 141
>gi|52143445|ref|YP_083384.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
E33L]
gi|51976914|gb|AAU18464.1| alkaline phosphatase synthesis response regulator [Bacillus cereus
E33L]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MDG +
Sbjct: 3 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGMDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKTIRKENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|288555025|ref|YP_003426960.1| winged helix family two component transcriptional regulator
[Bacillus pseudofirmus OF4]
gi|288546185|gb|ADC50068.1| two component transcriptional regulator, winged helix family
protein [Bacillus pseudofirmus OF4]
Length = 233
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M K +L+ EDD + + + K GY +G + + E + DI++P
Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++DG EL + + + ++ +TG + KPF +LV + +
Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120
Query: 118 LTI 120
+
Sbjct: 121 MRR 123
>gi|229147384|ref|ZP_04275733.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|296505274|ref|YP_003666974.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|228636066|gb|EEK92547.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|296326326|gb|ADH09254.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|94500213|ref|ZP_01306747.1| two component system response regulatory protein [Oceanobacter sp.
RED65]
gi|94427786|gb|EAT12762.1| two component system response regulatory protein [Oceanobacter sp.
RED65]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +DD + L + L + G+EV++ +G A D + +E L++ D++MPE++
Sbjct: 1 MS-RLLLVDDDQALNSLLTEYLSQEGFEVINAYDGKQALDSLTQE-PDLMVLDVMMPELN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + D L ++ +T L+KP + R+L+ +N +L
Sbjct: 59 GIEVLKQLRQKDIQLPILMLTAKGDDLDRILGLELGADDYLAKPCNPRELLARINAILRR 118
Query: 121 KN 122
+
Sbjct: 119 SH 120
>gi|85860826|ref|YP_463028.1| response regulator [Syntrophus aciditrophicus SB]
gi|85723917|gb|ABC78860.1| response regulator with sigma 54 interaction domain [Syntrophus
aciditrophicus SB]
Length = 502
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 61/119 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ +MR L L K GY+V +G A + + +E +++TD+ MP++ G+
Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L T P+ V+ IT + D+ ++KPF +L++ + + + +
Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIRTR 120
>gi|19703920|ref|NP_603482.1| two-component response regulator czcR [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296327490|ref|ZP_06870036.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19714090|gb|AAL94781.1| Two-component response regulator czcR [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|296155316|gb|EFG96087.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L K + V S +G A + + + +++ D++MP+M+G E
Sbjct: 2 KILVVEDEKDLNNIISKHLKKNNFSVDSVFDGEEALEYLSYGDYDVIILDVMMPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + L KPF R+L+ + L+ K
Sbjct: 62 VVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRK 119
>gi|325274980|ref|ZP_08140980.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324099887|gb|EGB97733.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|319640566|ref|ZP_07995286.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
gi|317387843|gb|EFV68702.1| hypothetical protein HMPREF9011_00883 [Bacteroides sp. 3_1_40A]
Length = 1350
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G + + +++++DI+MP MDGIEL
Sbjct: 1100 VLVVEDNADIREYIRSSFTDI-YEVITAKDGKEGCELAQARIPNIIVSDIMMPVMDGIEL 1158
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1159 CKRIKEDMRTSHIPVILLTAKDSLQDKEEGYASGADSYLTKPFSAKLLHSRINNLLETR 1217
>gi|313898465|ref|ZP_07832002.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312956847|gb|EFR38478.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L GYEV + A + ++ L L D++MPE+
Sbjct: 1 MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSKDALEYMKNNRVDLALLDVMMPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R E V+ +T + ++KPF+ +LV V L
Sbjct: 61 GFEICRIIREKYM-FPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRR 119
>gi|311031098|ref|ZP_07709188.1| two-component response regulator [Bacillus sp. m3-13]
Length = 223
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + R L L GYE + G S +K +E + L+L D+++PE+ G+E+
Sbjct: 4 ILIIEDEKKIARVLQLELEHEGYETDAAFTGTSGLEKFKENHWDLVLLDVMLPELSGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR D V+ +T ++ ++KPF + +L+ V L
Sbjct: 64 LRRIRATDTSTPVILLTARNSIPDKVSGLDLGANDYVTKPFEIEELLARVRASLR 118
>gi|299143988|ref|ZP_07037068.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518473|gb|EFI42212.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL ED+D +R+F+ L + GY+V G RE +++ D+++P +D
Sbjct: 1 MSTKILLVEDEDAIRKFVKINLEREGYDVYEAPTGEDGVAIAREVHPEIVVLDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R P+L ++ +T L+KPF+ +L + L
Sbjct: 61 GFEVCRILRGEFPELGIVMLTAKTEDYDKIMGLQYGTDDYLTKPFNPTELTLRIKS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|257459560|ref|ZP_05624669.1| transcriptional regulatory protein QseB [Campylobacter gracilis
RM3268]
gi|257442985|gb|EEV18119.1| transcriptional regulatory protein QseB [Campylobacter gracilis
RM3268]
Length = 220
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ D+ + + K L K GY V G A + + + ++ D +MP MDG E
Sbjct: 2 KILLVEDEKDLNQIIAKCLKKDGYSVDCAFCGKEALEFLDVAKYDAIVLDAMMPVMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ A V+F+T A + KPF R+L+ + ++ KN
Sbjct: 62 FLKAARARGLGTPVLFLTARDAKEDIIAGLDLGADDYMVKPFDFRELLARLRAIIRRKN 120
>gi|111221078|ref|YP_711872.1| response regulator in two-component regulatory system [Frankia alni
ACN14a]
gi|111148610|emb|CAJ60283.1| response regulator in two-component regulatory system [Frankia alni
ACN14a]
Length = 244
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + + L AG++V +G SA P L++ D+++P +DG+E
Sbjct: 3 RVLVVDDDALVAEVVDRYLRNAGFDVDRAADGPSALRTAEARPPDLVVLDLMLPGLDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR T P + V+ +T A A ++KPF R+L V +L
Sbjct: 63 VFRRLTARRP-VPVIMLTARADEADRITGLEVGADDYVTKPFSPRELTLRVRSVL 116
>gi|322806184|emb|CBZ03752.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFIKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + ++F++ + + KPF +++L V L
Sbjct: 60 GFQVCQNIRDKVS-CPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|319795506|ref|YP_004157146.1| two component transcriptional regulator winged helix family
[Variovorax paradoxus EPS]
gi|315597969|gb|ADU39035.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus EPS]
Length = 234
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ ED+ D+ + L +GYE +G SA + + P L L DI++P +D
Sbjct: 1 MT-RIVVVEDEIDIASVVQDYLRHSGYETAHFADGQSALESIVAAPPDLTLLDIMLPRLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RRA E ++ +T + KPF R+LV V +L
Sbjct: 60 GIEVLRRAREHTAH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118
>gi|239627534|ref|ZP_04670565.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239517680|gb|EEQ57546.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 235
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + +L + G EV +G A + ++ + ++L D+++P++DG E
Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAVELAKKTEYDIVLLDVMLPKLDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E D+ ++ +T +SKPF++ ++ + ++ +
Sbjct: 63 VCQAIRE-FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRRSS 120
>gi|163849376|ref|YP_001637420.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222527373|ref|YP_002571844.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163670665|gb|ABY37031.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222451252|gb|ACM55518.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D ++R + L + GY VV+ ++GA R L+L DI+MP++D
Sbjct: 1 MRQTILIIDDHLNVRTMIADYLQEIGYRVVTASDGAEGLIIARRVRPDLVLLDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + V+ +T ++KPF L++LV + +L
Sbjct: 61 GFGFLQAYRREH-QAPVILLTARIDETDKVVGLELGADDYVTKPFSLKELVARIRAVLRR 119
>gi|329929178|ref|ZP_08282964.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
gi|328936855|gb|EGG33290.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
Length = 256
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q++L+ ED+ + R L L + G++V +G + Y+K + + L+L D+++P M+G
Sbjct: 15 TQRMLVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKASQHEYDLILLDVMLPGMNG 74
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ +T A ++KPF + +L+ V+ ++
Sbjct: 75 FQILEKLRSNGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 133
>gi|326939521|gb|AEA15417.1| two-component response regulator vanR [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|323527236|ref|YP_004229389.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323384238|gb|ADX56329.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 220
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A +P+ L+L D+ +P+ DG++
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALSAASSQPYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R L V+ +T AVA L KPF L +L + L+ +
Sbjct: 62 VLRTLRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQ 119
>gi|256380300|ref|YP_003103960.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255924603|gb|ACU40114.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 261
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G++ +GA A +RE L+L D+++P M+
Sbjct: 37 MKARVLVVDDDPALAEMLTIVLRGEGFDTAVVADGARALPALRELKPDLVLLDLMLPGMN 96
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + ++ +T + + KPF ++LV + +
Sbjct: 97 GIDVCKAIRSE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARIRARMRR 155
>gi|229196123|ref|ZP_04322874.1| Two-component response regulator vanR [Bacillus cereus m1293]
gi|228587357|gb|EEK45424.1| Two-component response regulator vanR [Bacillus cereus m1293]
Length = 242
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF +L+ V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130
>gi|167765313|ref|ZP_02437426.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
gi|167696941|gb|EDS13520.1| hypothetical protein BACSTE_03701 [Bacteroides stercoris ATCC 43183]
Length = 1354
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++R +L L + ++ NG A +K++ +++TD++MP MDGI+
Sbjct: 1105 TILIVEDNQEIRHYLSSGLAAL-FNILEAGNGEEALEKLKNHEADIIITDVMMPVMDGIK 1163
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-I 120
L + + + V+ ++ + + +SKPF + L +++ ++
Sbjct: 1164 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFSIAVLTSKIQNMMRTR 1223
Query: 121 KN 122
++
Sbjct: 1224 RH 1225
>gi|124007931|ref|ZP_01692632.1| two-component system response regulator [Microscilla marina ATCC
23134]
gi|123986693|gb|EAY26483.1| two-component system response regulator [Microscilla marina ATCC
23134]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ + L + L GY +G + D F L + D+++P+MDG
Sbjct: 6 KILLVEDDNNLGQLLQEYLQIKGYPTTLRRDGEAGLDTFHTAGFDLCILDVMLPKMDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA + E + + ++F+T + + KPF + +L+ + ++
Sbjct: 66 LAEKIREQNKKVPIIFLTAKSMKEDAIKGFKAGADDYIHKPFSMEELLLRIEAIMRR 122
>gi|94971588|ref|YP_593636.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94553638|gb|ABF43562.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 247
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +DD ++ + + L + G+ V NG E + L++ D+++P M+G L
Sbjct: 23 LLIDDDAELCEMMSEFLVQHGHSVDCIRNGPDGLKSAAETKYDLVILDVMLPGMNGFTLL 82
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ P + V+ +T A L KPF +L+ V +L
Sbjct: 83 SQLRRRTP-VPVIMLTARTAPHDRIQGLEAGADDYLPKPFDPDELLARVRAVLRR 136
>gi|86606539|ref|YP_475302.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
gi|86555081|gb|ABD00039.1| DNA-binding response regulator RpaA [Synechococcus sp. JA-3-3Ab]
Length = 251
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L L AGYEVV +G + L++ D+++P++DG+
Sbjct: 3 RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ ++ +T + L+KPF +++L+ V LL
Sbjct: 63 VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRR 121
>gi|317404121|gb|EFV84571.1| two-component system response regulator [Achromobacter xylosoxidans
C54]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GY V +G ++ E + L+ D+++P +DG+
Sbjct: 5 RRVLIVEDDAHIAELLRLHLRDEGYAVEYAADGNEGMRRLEEGGWDALVLDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +RA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICKRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSMLELVARVRALLRR 122
>gi|219667712|ref|YP_002458147.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537972|gb|ACL19711.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + + L Y + NG A D + +E L + D+++P++D
Sbjct: 1 MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIAKEKLDLAILDVMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E + V+ +T ++KPF +L+ V L
Sbjct: 61 GFSICRQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119
>gi|163791510|ref|ZP_02185916.1| response regulator [Carnobacterium sp. AT7]
gi|159873233|gb|EDP67331.1| response regulator [Carnobacterium sp. AT7]
Length = 241
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+D +RR L L + Y V +NG A E + L+L D+++P+MDGIE+A
Sbjct: 9 LVVDDEDRIRRLLKMYLERENYVVFEADNGEDAIKMALENDYDLILLDLMLPKMDGIEVA 68
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D +M +T + + KPF R++V V+ +L
Sbjct: 69 GKIREA-KDTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122
>gi|186681683|ref|YP_001864879.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186464135|gb|ACC79936.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 475
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L + L G+E++ NG A + ++L D++MP +DG
Sbjct: 11 ILIVDDNPNNLEVLSETLMDTGWEILIAVNGEGAIAQAEYACPDIILLDVMMPGIDGFTA 70
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R D+ ++F+T + + ++KPF +++ + L I+N
Sbjct: 71 CQRLKSNPVTCDIPIIFMTALSETVDKVKGLSLGAVDYITKPFEHEEVLARIKTHLQIRN 130
>gi|330809326|ref|YP_004353788.1| two-component regulator system response regulator PmrA [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327377434|gb|AEA68784.1| Putative two-component regulator system response regulator PmrA
[Pseudomonas brassicacearum subsp. brassicacearum
NFM421]
Length = 220
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + +AL + GY V +G+SA + E F L + D+ +P MDG++
Sbjct: 2 RLLLIEDDVALGEGIHQALSREGYTVDWVQDGSSALHSLLSETFDLAVLDLGLPRMDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T A L KPF L +L + LL
Sbjct: 62 VLRRLRDSGSNLPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR 118
>gi|283458744|ref|YP_003363383.1| response regulator [Rothia mucilaginosa DY-18]
gi|283134798|dbj|BAI65563.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Rothia mucilaginosa
DY-18]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED++ + L LG+ G++ + +NG A E L+L D+++P M
Sbjct: 1 MMSKILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ E+ + ++ +T + ++KP+ R+L+ + +L
Sbjct: 61 GMEVCRKLREV-SSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|253997228|ref|YP_003049292.1| winged helix family two component transcriptional regulator
[Methylotenera mobilis JLW8]
gi|253983907|gb|ACT48765.1| two component transcriptional regulator, winged helix family
[Methylotenera mobilis JLW8]
Length = 242
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD +R L + L + G+ V + N+ + + LL+ D+++P DG
Sbjct: 6 NKKILVVDDDVRLRELLQRYLTEQGFTVKTANDAKEMDSILGSDTIDLLVLDLMLPGEDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + RR + ++ +T L KPF+ R+L+ +N +L
Sbjct: 66 LSICRRMRGNATMMPIVMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVLRR 124
>gi|229137374|ref|ZP_04265986.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|228646073|gb|EEL02295.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + ++F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|229138610|ref|ZP_04267194.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
gi|228644889|gb|EEL01137.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST26]
Length = 242
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF +L+ V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 130
>gi|212213466|ref|YP_002304402.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
gi|212011876|gb|ACJ19257.1| two-component response regulator [Coxiella burnetii CbuG_Q212]
Length = 245
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L K L + G+E NG+ + ++ L++ DI+MP DG+
Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKNGSEMQAILLKQAVDLVILDIMMPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +T + LSKPF+ R+L+ V +L
Sbjct: 66 LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>gi|254448586|ref|ZP_05062045.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium HTCC5015]
gi|198261775|gb|EDY86061.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium HTCC5015]
Length = 236
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++IL+ ED+ +R + AL + GY + + A A D + E+ L+L D ++P
Sbjct: 10 MSGKRILVVEDEQAIREMIGFALRREGYHFIEAGSVAEAEDAIAEQVPDLMLVDWMLPGT 69
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E R EL D+ V+ +T +SKPF R+L+ + +
Sbjct: 70 SGVEFVRHTKRDELTQDVPVIMLTARTEEDDKIVGLDAGADDYVSKPFSPRELIARIRAV 129
Query: 118 LTI 120
L
Sbjct: 130 LRR 132
>gi|254255648|ref|ZP_04948964.1| Response regulator [Burkholderia dolosa AUO158]
gi|124901385|gb|EAY72135.1| Response regulator [Burkholderia dolosa AUO158]
Length = 286
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 52 KRILIVEDDADIADVLSLHLRDERYEVVHTADGAQGLRLLEQGGWDALILDLMLPGVDGL 111
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 112 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 169
>gi|91201265|emb|CAJ74325.1| strongly similar to two-component response regulator OmpR/PhoB
family [Candidatus Kuenenia stuttgartiensis]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + ++L + L + Y V +NG E + L++ DI++P ++G E
Sbjct: 2 KILIIEDEKKIAKYLKQGLEENSYTVDIAHNGIDGLHLATHENYDLIVVDIMLPGINGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +F+T +V + + KPF +L+ + + +
Sbjct: 62 VLKQIRNTGIHTPAIFLTAIDSVNDKVNGLDIGADDYIVKPFSFSELLARIRACMRRR 119
>gi|29349532|ref|NP_813035.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29341441|gb|AAO79229.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1450
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+++++ FL L Y V++ +NG + L+++D++MP MDG+E
Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITASNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E + + ++ ++ A++ ++KPF L + LL +
Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQR 1310
>gi|113474512|ref|YP_720573.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110165560|gb|ABG50100.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1133
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
+L+ +D+ + L L Y+V +G A + F L+L D++MP M G
Sbjct: 723 HVLVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDVMMPNMSGY 782
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E P L V+ +T +A L+KPF +L+ + + +
Sbjct: 783 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKL 842
>gi|228985086|ref|ZP_04145253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228774573|gb|EEM22972.1| DNA-binding response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 225
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|332969546|gb|EGK08565.1| subtilin biosynthesis regulatory protein SpaR [Desmospora sp. 8437]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ M + AL GY+V++ +G S +D + L+L DI+MP +D
Sbjct: 1 MGEIILVVDDERAMVSMIRDALEDEGYQVLTAYDGESVWDLLNR-KPDLILLDIMMPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + ++F++ V + A ++KPF L +LV V L
Sbjct: 60 GIQVCRWIRDSVS-CPILFLSARREVEDRIEGLAVGGDDYITKPFSLEELVARVAAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|294620355|ref|ZP_06699666.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1679]
gi|291593409|gb|EFF24972.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1679]
Length = 221
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMD
Sbjct: 1 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D+ V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|238754271|ref|ZP_04615628.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
29473]
gi|238707518|gb|EEP99878.1| Transcriptional regulatory protein tctD [Yersinia ruckeri ATCC
29473]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED ++ +L KAL G+ V N+G A ++ E ++L++ D+ +P ++G+E
Sbjct: 2 RILLVEDHPELSHWLQKALTHVGFAVDVANDGIEADHLLQHEKYALVVLDVALPRLNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + L V+ +T VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQTLPVLLLTARTDVADRVKGLNSGADDYLTKPFELDELEARIRALLRR 118
>gi|229000557|ref|ZP_04160100.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
gi|229003857|ref|ZP_04161665.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
gi|228757365|gb|EEM06602.1| Two-component response regulator vanRB [Bacillus mycoides Rock1-4]
gi|228759200|gb|EEM08203.1| Two-component response regulator vanRB [Bacillus mycoides Rock3-17]
Length = 228
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ + + L Y V ++G + ++ F L+L D++MP ++
Sbjct: 9 MNYHILVVEDDQEIQELIKQFLMTQQYAVTVASDGLEGMKQFNKQSFDLILLDVMMPNLN 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A+ ++ ++ +T ++KPF L+ V +L
Sbjct: 69 GFEVAKMIRSQ-SNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 127
>gi|227876270|ref|ZP_03994386.1| response regulator [Mobiluncus mulieris ATCC 35243]
gi|269977977|ref|ZP_06184930.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
gi|306819545|ref|ZP_07453252.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|307701179|ref|ZP_07638201.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
gi|227843231|gb|EEJ53424.1| response regulator [Mobiluncus mulieris ATCC 35243]
gi|269933824|gb|EEZ90405.1| DNA-binding response regulator MtrA [Mobiluncus mulieris 28-1]
gi|304647837|gb|EFM45155.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|307613573|gb|EFN92820.1| DNA-binding response regulator MtrA [Mobiluncus mulieris FB024-16]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + + L +GY C +GA A + L+L D+++P MD
Sbjct: 1 MSSKILVVDDDTALSEMIGIILESSGYTPSFCADGAKALGEFNRINPDLVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR + + ++ +T + KPF ++L+ V L
Sbjct: 61 GIEICRRIRQ-TSVVPIIMLTAKTDTTDVVAGLEAGADDYVPKPFKPKELLARVAARLR 118
>gi|226314787|ref|YP_002774683.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226097737|dbj|BAH46179.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 226
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+LL EDD+ +R F+ K +EV +G A + L++ DI+MPEMD
Sbjct: 1 MKRKVLLVEDDELIREFVSDYFKKEAWEVYEAQHGKMAMELFALHSVDLVVLDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ + D+ ++ IT + ++KPF + LV L+
Sbjct: 61 GWSVCRKIRQQ-SDIPIIIITARVDDDDQLMGFELGADEYVTKPFSPKVLVARAKALMKR 119
>gi|255505806|ref|ZP_05348241.3| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
14469]
gi|255265751|gb|EET58956.1| DNA-binding response regulator MtrA [Bryantella formatexigens DSM
14469]
Length = 236
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ + + + K GY V + +G A + R+ P ++ D+++P M G
Sbjct: 7 KNVLIVDDETMICDSVSAYITKQGYHVFTAGDGKEALEIFRKYPIMFVILDLMLPGMTGE 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + V+ +T + ++KPF ++ L + +L
Sbjct: 67 EICQAIRRQ-SRVPVIMLTAKTQEEDVLNGLDIGADDYVTKPFSVKQLYARMEAILRR 123
>gi|52143461|ref|YP_083367.1| response regulator [Bacillus cereus E33L]
gi|51976930|gb|AAU18480.1| response regulator [Bacillus cereus E33L]
Length = 254
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|15902120|ref|NP_357670.1| DNA-binding response regulator [Streptococcus pneumoniae R6]
gi|15457611|gb|AAK98880.1| Response regulator [Streptococcus pneumoniae R6]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ ++ + L +AGY+V+ ++G A + +++P L++TD++MP MD
Sbjct: 1 MGKTILLVDDEVEITDIHQRCLIQAGYQVLVAHDGLEALELFKKKPIDLIITDVMMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L L P+ +FIT + + ++KPF R+LV V+ +L
Sbjct: 61 GYDLISEVQYLSPEQPFLFITAKTSEQDKIYGLSLVADDFIAKPFSPRELVLRVHNILRR 120
>gi|290477255|ref|YP_003470172.1| response regulator in two-component regulatory system with CpxA,
regulates genes involved in folding/degrading
periplasmic proteins (OmpR family) [Xenorhabdus bovienii
SS-2004]
gi|289176605|emb|CBJ83414.1| response regulator in two-component regulatory system with CpxA,
regulates genes involved in folding/degrading
periplasmic proteins (OmpR family) [Xenorhabdus bovienii
SS-2004]
Length = 230
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFTVVLAHDGEQALQYIDS-SIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQDH-QTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSN 119
>gi|221315596|ref|ZP_03597401.1| hypothetical protein BsubsN3_17947 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320512|ref|ZP_03601806.1| hypothetical protein BsubsJ_17915 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324796|ref|ZP_03606090.1| hypothetical protein BsubsS_18066 [Bacillus subtilis subsp.
subtilis str. SMY]
Length = 293
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY ++ + A V+ L++ D++M M
Sbjct: 59 NASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMS 118
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 119 GFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 177
>gi|159027076|emb|CAO89261.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 250
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDI 54
N +IL+ ED++ +R +I AL + GYE + ++G +A + ++ + F L++ D+
Sbjct: 18 NHRILIVEDEEVIRDMIILALEEEGYEALGVSDGRAALELLQSQESNHGESRFDLVVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P++ G+++ R + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 MLPQISGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIK 121
L+ +
Sbjct: 138 RALIRRQ 144
>gi|77460719|ref|YP_350226.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77384722|gb|ABA76235.1| putative two-component system, response regulator [Pseudomonas
fluorescens Pf0-1]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L V ++
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLVKPFALSELAARVEAVMRR 119
>gi|209964322|ref|YP_002297237.1| DNA-binding response regulator, putative [Rhodospirillum centenum
SW]
gi|209957788|gb|ACI98424.1| DNA-binding response regulator, putative [Rhodospirillum centenum
SW]
Length = 238
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +L+ +DD ++R L + L + GY V + +G + + L++ D+++P
Sbjct: 1 MTESLHLLIVDDDREIRDLLTRYLARHGYRVTAAKDGQEMRRYLADRNIDLVVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R V+ ++ A L KPF+ R+LV + +L
Sbjct: 61 EDGLSLCRAIRADG-GPPVVMLSAMGEDADRILGLEIGADDYLPKPFNPRELVARIKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|163942544|ref|YP_001647428.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163864741|gb|ABY45800.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y+V+ +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|332637971|ref|ZP_08416834.1| response regulator [Weissella cibaria KACC 11862]
Length = 233
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + + L K GY+VV +G A D E L+L D ++PE++
Sbjct: 1 MS-KILVVDDEKPISDIIKFNLTKEGYDVVVAMDGREALDLFESEDPDLVLLDQMLPELE 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ V+ +T + ++KPF R+L+ + L
Sbjct: 60 GTEVLRQIR-TKSQTPVIMVTAKDSEIDKVLGLEMGADDYVTKPFSNRELLARIKANLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|297517136|ref|ZP_06935522.1| osmolarity response regulator [Escherichia coli OP50]
gi|242378928|emb|CAQ33726.1| ompR [Escherichia coli BL21(DE3)]
gi|253979390|gb|ACT45060.1| osmolarity response regulator [Escherichia coli BL21(DE3)]
Length = 239
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYNILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|228983771|ref|ZP_04143968.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775966|gb|EEM24335.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|269926131|ref|YP_003322754.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269789791|gb|ACZ41932.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +DD + + L G+EV + + A + + L+L D+ +P MDG L
Sbjct: 8 ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQLPRMDGFTL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + P++ V+ +T A + + KPF +LV V +L N
Sbjct: 68 LKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFEPAELVARVKSVLRRAN 125
>gi|160945860|ref|ZP_02093086.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
M21/2]
gi|158443591|gb|EDP20596.1| hypothetical protein FAEPRAM212_03393 [Faecalibacterium prausnitzii
M21/2]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+A+D+ D+ L G+ V+ NGA A +V ++ ++L DI MP D
Sbjct: 1 MNAKILIADDESDIVSMLGNFFESKGFRVLPAFNGAEALKQVEKQ-PDIILLDINMPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R + ++F+T A + KPF L +L V L
Sbjct: 60 GLEVCKRIRD-HISCPILFLTARIEDTDKVKGFAVGGDDYIVKPFSLVELDARVRAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|219847341|ref|YP_002461774.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219541600|gb|ACL23338.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD + R + L +AG+ V S +GA+A +R+E L++ D+++P+ DG ++
Sbjct: 4 VLVVDDDPGIVRLVRSYLEQAGFRVASAFDGATARRLIRQERPDLVILDLMLPDEDGFDI 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR L ++ +T + KPF+ R++V V +L
Sbjct: 64 ARSLRSDPATATLPIIMLTARIDDTDRIVGLELGADDYIVKPFNPREVVARVKAVLRR 121
>gi|322835521|ref|YP_004215547.1| two component transcriptional regulator, winged helix family
[Rahnella sp. Y9602]
gi|321170722|gb|ADW76420.1| two component transcriptional regulator, winged helix family
[Rahnella sp. Y9602]
Length = 240
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ EDD D+ L L GYE+ +G + + + L+ D+++P +DG
Sbjct: 4 TKKILIVEDDGDIAELLSLHLRDEGYEITHAADGNLGVAHLEKGGWDALILDLMLPGVDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ RRA + ++ I+ ++ L+KPF + +LV V L +
Sbjct: 64 LEICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123
>gi|319763169|ref|YP_004127106.1| phosphate regulon transcriptional regulatory protein phob
[Alicycliphilus denitrificans BC]
gi|330825232|ref|YP_004388535.1| two component transcriptional regulator PhoB [Alicycliphilus
denitrificans K601]
gi|317117730|gb|ADV00219.1| phosphate regulon transcriptional regulatory protein PhoB
[Alicycliphilus denitrificans BC]
gi|329310604|gb|AEB85019.1| two component transcriptional regulator PhoB, winged helix family
[Alicycliphilus denitrificans K601]
Length = 233
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + + L G+ + + +A ++ ++L D ++P M G++
Sbjct: 6 HVLVVEDEAAIAELIAVNLRHNGFTPIWAEDAEAAQRELDAVLPDVILLDWMLPGMSGLQ 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR+ + ++ +T ++KPF ++L+ + +L +
Sbjct: 66 LARKWRSAARTKGVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125
>gi|206974997|ref|ZP_03235912.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217959391|ref|YP_002337939.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|222095531|ref|YP_002529591.1| response regulator [Bacillus cereus Q1]
gi|206747016|gb|EDZ58408.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217065539|gb|ACJ79789.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|221239589|gb|ACM12299.1| response regulator [Bacillus cereus Q1]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF +L+ V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIELIARVKAQLRR 120
>gi|190572351|ref|YP_001970196.1| putative two-component transcriptional regulator response
regulatory protein [Stenotrophomonas maltophilia K279a]
gi|194364007|ref|YP_002026617.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|254520920|ref|ZP_05132975.1| two-component system regulatory protein [Stenotrophomonas sp.
SKA14]
gi|99908241|gb|ABF68763.1| PhoP [Stenotrophomonas maltophilia]
gi|190010273|emb|CAQ43881.1| putative two-component transcriptional regulator response
regulatory protein [Stenotrophomonas maltophilia K279a]
gi|194346811|gb|ACF49934.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
gi|219718511|gb|EED37036.1| two-component system regulatory protein [Stenotrophomonas sp.
SKA14]
Length = 227
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118
>gi|15607742|ref|NP_215116.1| two component DNA binding transcriptional regulatory protein TCRA
[Mycobacterium tuberculosis H37Rv]
gi|148660372|ref|YP_001281895.1| putative two component DNA binding transcriptional regulatory
protein TcrA [Mycobacterium tuberculosis H37Ra]
gi|148821804|ref|YP_001286558.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis F11]
gi|215402371|ref|ZP_03414552.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis 02_1987]
gi|215410144|ref|ZP_03418952.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis 94_M4241A]
gi|215425834|ref|ZP_03423753.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis T92]
gi|253797536|ref|YP_003030537.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 1435]
gi|254230940|ref|ZP_04924267.1| two component DNA binding transcriptional regulatory protein tcrA
[Mycobacterium tuberculosis C]
gi|254363558|ref|ZP_04979604.1| two component DNA binding transcriptional regulatory protein tcrA
[Mycobacterium tuberculosis str. Haarlem]
gi|254549559|ref|ZP_05140006.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260199607|ref|ZP_05767098.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis T46]
gi|260203767|ref|ZP_05771258.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis K85]
gi|289441991|ref|ZP_06431735.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis T46]
gi|289552854|ref|ZP_06442064.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 605]
gi|289573201|ref|ZP_06453428.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis K85]
gi|289744315|ref|ZP_06503693.1| two component DNA binding transcriptional regulatory protein TCRA
[Mycobacterium tuberculosis 02_1987]
gi|289749099|ref|ZP_06508477.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis T92]
gi|294996116|ref|ZP_06801807.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis 210]
gi|297633098|ref|ZP_06950878.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 4207]
gi|297730076|ref|ZP_06959194.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN R506]
gi|298524089|ref|ZP_07011498.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|313657403|ref|ZP_07814283.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN V2475]
gi|81668934|sp|O07776|TCRA1_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
gi|288559204|sp|Q7D9K0|TCRA2_MYCTU RecName: Full=Transcriptional regulatory protein tcrA
gi|2222756|emb|CAB09978.1| PROBABLE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
PROTEIN TCRA [Mycobacterium tuberculosis H37Rv]
gi|124599999|gb|EAY59009.1| two component DNA binding transcriptional regulatory protein tcrA
[Mycobacterium tuberculosis C]
gi|134149072|gb|EBA41117.1| two component DNA binding transcriptional regulatory protein tcrA
[Mycobacterium tuberculosis str. Haarlem]
gi|148504524|gb|ABQ72333.1| putative two component DNA binding transcriptional regulatory
protein TcrA [Mycobacterium tuberculosis H37Ra]
gi|148720331|gb|ABR04956.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis F11]
gi|253319039|gb|ACT23642.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 1435]
gi|289414910|gb|EFD12150.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis T46]
gi|289437486|gb|EFD19979.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 605]
gi|289537632|gb|EFD42210.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis K85]
gi|289684843|gb|EFD52331.1| two component DNA binding transcriptional regulatory protein TCRA
[Mycobacterium tuberculosis 02_1987]
gi|289689686|gb|EFD57115.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis T92]
gi|298493883|gb|EFI29177.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|326902434|gb|EGE49367.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis W-148]
gi|328457319|gb|AEB02742.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis KZN 4207]
Length = 253
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 140
>gi|269125708|ref|YP_003299078.1| winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268310666|gb|ACY97040.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length = 225
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ ED+ + + + L G+ V +G A ++ R L++ D+++P +DG+
Sbjct: 4 HRILVVEDEPAIAEAVAERLRAEGFTAVIARDGLDAVERFRRSAPDLVVLDLMLPGLDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T L+KPF +R LV V LL
Sbjct: 64 EVCRRLQAERP-VPVLMLTARGEETDQLIGLGVGADDYLTKPFSMRVLVARVRALLRR 120
>gi|253578135|ref|ZP_04855407.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850453|gb|EES78411.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 234
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K ++V+ NG A D E+ +L++ D++MP+MDG
Sbjct: 13 KILVVDDESRMRKLVKDFLTKKNFQVLEAGNGEEAMDIFYEEKDIALIILDVMMPKMDGW 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + + ++ +T + + +SKPF + LV V +L
Sbjct: 73 EVCREIRK-NSKVPIIMLTARSDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 129
>gi|218134296|ref|ZP_03463100.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
43243]
gi|217991671|gb|EEC57677.1| hypothetical protein BACPEC_02189 [Bacteroides pectinophilus ATCC
43243]
Length = 234
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ + + + +L + G EV +G A + ++ + ++L D+++P++D
Sbjct: 1 MARKILVVDDEKLIVKGIRFSLLQDGMEVDCAYDGEEALEMIKTNTYDMVLLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + ++ E ++ ++ +T ++KPF++ ++ + +
Sbjct: 61 GIAVCQQVRE-FSNVPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARMKAIFRR 119
>gi|86607748|ref|YP_476510.1| DNA-binding response regulator RpaA [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86556290|gb|ABD01247.1| DNA-binding response regulator RpaA [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 250
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L L AGYEVV +G + L++ D+++P++DG+
Sbjct: 3 RILIIEDDPSILDILRINLELAGYEVVKATDGVRGQALALQVLPDLIILDLMLPQVDGLT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E ++ ++ +T + L+KPF +++L+ V LL
Sbjct: 63 VCQRLRREERTSEIPILMLTALGQTQDKIEGFNAGADDYLTKPFEVQELLVRVRALLRRS 122
Query: 122 N 122
+
Sbjct: 123 D 123
>gi|84684965|ref|ZP_01012865.1| Phosphate regulon transcriptional regulator, PhoR [Maritimibacter
alkaliphilus HTCC2654]
gi|84667300|gb|EAQ13770.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacterales
bacterium HTCC2654]
Length = 229
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L GY+V NG A V E L+L D ++P + GIE+
Sbjct: 8 VLLVEDEPAQREILRYNLASEGYDVSIAENGDDAMVLVEEIGPDLILLDWMLPGVSGIEI 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ V+ ++ + + KPF +++L+ + L
Sbjct: 68 CRRVKSRRETTDIPVIMLSARSDEMDRVRGLETGADDYMVKPFSVQELMARIRTQLRR 125
>gi|310641219|ref|YP_003945977.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309246169|gb|ADO55736.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 243
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ ED+ + R L L + G+EV + ++G++ +++ E + L+L D+++P M+
Sbjct: 1 MGQRLLVIEDEPTLARLLSYNLIQEGFEVDTEDHGSAGFERASRESYDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +T A ++KPF + +L+ V +L
Sbjct: 61 GLDILSRLRHQGLTTPIIILTAKNGEAEVVQGLKSGADDYITKPFGVSELLARVTAVLRR 120
>gi|298252102|ref|ZP_06975905.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297546694|gb|EFH80562.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 224
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD + L + L GY V +G A + E L++ D+++P ++
Sbjct: 1 MKAHLLVVDDDPRITDLLRRILAYEGYSVAVATSGDDALKRTLERAPDLIVLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +R ++ ++ +T VA + KPF +LV + LL
Sbjct: 61 GLEVVQRLRVAGDNVPILLLTARDTVADRVKGFEIGADDYVVKPFAPEELVARIKALLRR 120
>gi|260654507|ref|ZP_05859997.1| phosphate regulon transcriptional regulatory protein PhoB
[Jonquetella anthropi E3_33 E1]
gi|260630784|gb|EEX48978.1| phosphate regulon transcriptional regulatory protein PhoB
[Jonquetella anthropi E3_33 E1]
Length = 237
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 3/125 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ ED+ + L++AL ++GYE +G + + + L+L D+++P +
Sbjct: 1 MSRAHILVIEDEAPIADILVQALKRSGYEASWAGDGDTGLELIMTGRPDLVLLDLMLPGL 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G E+ RR + D V+ +T + A + KPF L +L+ V
Sbjct: 61 EGWEVCRRMRQAPETRDTPVIMVTARRDESEAVAGLAAGADDYIRKPFSLAELMARVEAQ 120
Query: 118 LTIKN 122
L ++
Sbjct: 121 LRRRS 125
>gi|254712298|ref|ZP_05174109.1| Probable transcriptional regulator ycf27 [Brucella ceti M644/93/1]
gi|254715370|ref|ZP_05177181.1| Probable transcriptional regulator ycf27 [Brucella ceti M13/05/1]
gi|261217099|ref|ZP_05931380.1| two-component system response regulator [Brucella ceti M13/05/1]
gi|261319969|ref|ZP_05959166.1| two component system response regulator [Brucella ceti M644/93/1]
gi|260922188|gb|EEX88756.1| two-component system response regulator [Brucella ceti M13/05/1]
gi|261292659|gb|EEX96155.1| two component system response regulator [Brucella ceti M644/93/1]
Length = 238
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEILDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 214
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD +R + + L G+ V S +G + ++ +E L+++DIVMP+MDG
Sbjct: 2 QKILIVDDDRTLRAAITRYLEDRGFVVNSAASGLAGFNSFSQEVPDLIVSDIVMPDMDGF 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + D L +F++ + + + L KPFH R+L+ ++ L
Sbjct: 62 ELCTKIRNTDAGQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLAR 121
>gi|261407294|ref|YP_003243535.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261283757|gb|ACX65728.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 232
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL EDD+D+ + + L + Y V S +G A ++E F L+L D+++P+++
Sbjct: 1 MQKRILLVEDDNDINQLIESQLKQDHYSVDSARDGEEALALFQKEKFDLILLDLMLPKVN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + E + V+ I+ + +SKPF + +L V +
Sbjct: 61 GMELLKHIRE-TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRR 119
>gi|225180887|ref|ZP_03734335.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225168368|gb|EEG77171.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 237
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD D+ + L + V ++G + +P++L++ D+++P +DG E+
Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ +T + L+KPF R+ + V+ LL
Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRR 125
>gi|167764798|ref|ZP_02436919.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
gi|167697467|gb|EDS14046.1| hypothetical protein BACSTE_03189 [Bacteroides stercoris ATCC 43183]
Length = 1343
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+AED+ D+R++L + LGK+ Y ++ +NG A ++E+ L+LTD++MP MDG+
Sbjct: 1097 ETILIAEDNTDIRQYLCEELGKS-YHILQASNGEEALAILKEQDTDLILTDVMMPVMDGL 1155
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L ++ + + V+ ++ + + + KPF + + ++ L
Sbjct: 1156 QLCKQIKQSLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMAMVAAKIKNLFRT 1215
Query: 121 KN 122
++
Sbjct: 1216 RH 1217
>gi|94970088|ref|YP_592136.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94552138|gb|ABF42062.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ ILL ED++ + L L GY V NG Y F L++ DI +P+ +
Sbjct: 1 MNEHILLIEDEEALLTTLTDRLRAEGYSVEVARNGEEGYHHGTRNVFDLIILDIQLPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + ++ +T + ++KPF + +L+ + LL
Sbjct: 61 GFDVCRDIRQAGVATPILMLTARGQLVDKVVGLKIGADDYMTKPFEMIELMARIEALLRR 120
>gi|78224120|ref|YP_385867.1| two component, sigma54 specific, Fis family transcriptional
regulator [Geobacter metallireducens GS-15]
gi|78195375|gb|ABB33142.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter metallireducens GS-15]
Length = 470
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 66/117 (56%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +R L + L K G+ V + +G A ++++EE FSL++TD+ MP M G+E+
Sbjct: 6 VLVVDDEAVIREGLRRILEKEGFHVETSASGQIALERMQEENFSLVITDLKMPGMSGMEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L P++ V+ ITGF+ V ++ ++KPF + +V + L +
Sbjct: 66 LKAIKVLQPEVPVIIITGFSTVDTAVEAMKNGAFDYIAKPFTPEQITEKVRKALDQR 122
>gi|291279123|ref|YP_003495958.1| two-component response regulator [Deferribacter desulfuricans SSM1]
gi|290753825|dbj|BAI80202.1| two-component response regulator [Deferribacter desulfuricans SSM1]
Length = 224
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + + L + GY V +GA+ +K+ P+ L++ DI++PE++G
Sbjct: 3 KILIIEDEKQLNKQIKEILSEEGYTVDVSFDGATGLEKILSSPYDLIILDIMLPEINGYN 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E V+ I+ + LSKPF + +L+ V +L
Sbjct: 63 ILKHIRENKILTPVLMISAKGEIDDRIKGLNSGADDYLSKPFSIAELIARVKAILRR 119
>gi|229115474|ref|ZP_04244880.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
gi|228667887|gb|EEL23323.1| DNA-binding response regulator [Bacillus cereus Rock1-3]
Length = 228
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|149920915|ref|ZP_01909376.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
gi|149818187|gb|EDM77642.1| DNA-binding response regulator [Plesiocystis pacifica SIR-1]
Length = 289
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPE 58
++LL +DD +R + AL + GY V NGA A D + F LL+ D+ MPE
Sbjct: 35 RLLLVDDDPKLREVVGYALEREGYAVTQARNGAEALDLLEATGSSSADFDLLVVDVSMPE 94
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG +L RR D D V+F++ + ++KPF R+L V LL
Sbjct: 95 IDGFDLVRRLRLRDADTPVLFLSARSDEIDRILGLELGGDDYVTKPFSTRELATRVKVLL 154
Query: 119 TI 120
Sbjct: 155 RR 156
>gi|300784918|ref|YP_003765209.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|7339512|emb|CAB82846.1| putative response regulator [Amycolatopsis mediterranei]
gi|14572576|emb|CAC42478.2| response regulator protein [Amycolatopsis mediterranei]
gi|299794432|gb|ADJ44807.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ EDD +R L AL + G+ V + +G + + L++ D+++P MD
Sbjct: 1 MAE-VLVVEDDAAVREGLQLALRRQGHVVHTAESGELGIEVLVRHRPDLVVLDLMLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR P + ++ +T ++KP R L + +L
Sbjct: 60 GFETCRRMRAAGP-VPIIMLTARTDDFDIVAGLEAGADDYVAKPVEPRVLDARIRAVLRR 118
>gi|72162895|ref|YP_290552.1| response regulator receiver [Thermobifida fusca YX]
gi|71916627|gb|AAZ56529.1| response regulator receiver [Thermobifida fusca YX]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E ++G A + RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETKPDLVLLDLMLPGAD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R+ + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVCRQIRAE-SGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|21233365|ref|NP_639282.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21244740|ref|NP_644322.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|58580046|ref|YP_199062.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|66770328|ref|YP_245090.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|78049672|ref|YP_365847.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|84622042|ref|YP_449414.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|166713914|ref|ZP_02245121.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188993525|ref|YP_001905535.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. B100]
gi|289666417|ref|ZP_06487998.1| two-component system regulatory protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289669255|ref|ZP_06490330.1| two-component system regulatory protein [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|294626708|ref|ZP_06705303.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666629|ref|ZP_06731867.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325923104|ref|ZP_08184797.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
gi|325928269|ref|ZP_08189472.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|21110433|gb|AAM38858.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|21115200|gb|AAM43164.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|58424640|gb|AAW73677.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|66575660|gb|AAY51070.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|78038102|emb|CAJ25847.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|84365982|dbj|BAE67140.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|105872979|gb|ABF74730.1| PhoP [Xanthomonas oryzae pv. oryzae]
gi|167735285|emb|CAP53499.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris]
gi|292598956|gb|EFF43098.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603596|gb|EFF47009.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325541359|gb|EGD12898.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|325546419|gb|EGD17580.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
Length = 227
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118
>gi|329928026|ref|ZP_08282030.1| heme response regulator HssR [Paenibacillus sp. HGF5]
gi|328938130|gb|EGG34527.1| heme response regulator HssR [Paenibacillus sp. HGF5]
Length = 226
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++R + L +AG E V+ ++G A + + L++ DI+MP MDG
Sbjct: 3 KILVVDDDPNIRELIKVFLEEAGMEEVMEASDGVEALSVMEQVSVDLVVMDIMMPNMDGW 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + V+ +T L KPF +LV V LL
Sbjct: 63 ELCREIRRNT-GIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKR 119
>gi|229825510|ref|ZP_04451579.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
49176]
gi|229790073|gb|EEP26187.1| hypothetical protein GCWU000182_00870 [Abiotrophia defectiva ATCC
49176]
Length = 223
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60
KIL+ +D+ MR+ + L GYEVV +G A D + L++ D++MP+MD
Sbjct: 3 KAKILVVDDESRMRKLVKDFLHHEGYEVVEAEDGEKAVDIFFADSSIELIILDVMMPKMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + ++ +T + + +SKPF + L+ V +L
Sbjct: 63 GWQVCREIR-RHSTVPIIMLTAKSDEKDELQGFELGVDEYVSKPFSPKILMARVEAILRR 121
>gi|256419739|ref|YP_003120392.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256034647|gb|ACU58191.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+LL ED+ + + + +L G+E++ +G +E +++ DI+MP MD
Sbjct: 1 MS-KVLLIEDEWQLGQIVKDSLEMRGFEMLYAADGKEGLRLYQEHQPDVVVLDIMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + +LD ++F+T + L KPF + +L+ + LL
Sbjct: 60 GFTVTTEIRKLDKTTPIIFLTAKSQTTDVVKGFELGGNDYLKKPFSMDELIVRIKALLER 119
Query: 121 -KN 122
KN
Sbjct: 120 FKN 122
>gi|331085996|ref|ZP_08335079.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330406919|gb|EGG86424.1| hypothetical protein HMPREF0987_01382 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 224
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ + L + L Y V SC +G +A D + + +++ DI+MP+ DG+
Sbjct: 2 RILIAEDERDLNKILAQRLMAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + + V+ +T +V L KPF +L+ + LL
Sbjct: 62 VLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118
>gi|330831577|ref|YP_004394529.1| transcriptional regulatory protein CpxR [Aeromonas veronii B565]
gi|328806713|gb|AEB51912.1| Transcriptional regulatory protein CpxR [Aeromonas veronii B565]
Length = 226
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+DD ++ + L + L G++V +G ++ E+ F L+L D++MP+++G + +
Sbjct: 2 VDDDLELTQLLTEILTLEGFQVTVAEDGEEGLQRLAEQSFDLVLLDVMMPKLNGFAMLTK 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ +T + L+KPF R+L+ V +L
Sbjct: 62 LRKTH-DTPVLMLTARGDSQDRVNGLEAGADDYLAKPFDDRELLARVRAILRR 113
>gi|170701392|ref|ZP_02892352.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|170133701|gb|EDT02069.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
Length = 277
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 102
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 103 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160
>gi|219850003|ref|YP_002464436.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
gi|219544262|gb|ACL26000.1| multi-sensor hybrid histidine kinase [Chloroflexus aggregans DSM
9485]
Length = 1352
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+AED++ L + L GYEV NG A E L++ DI MPE+DG
Sbjct: 1227 SARVLVAEDNEMNLMVLSEYLQAYGYEVCVARNGREALQVAAEWRPDLIIMDIQMPELDG 1286
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E R+ ++ +T A L+KP LR L + RLLT
Sbjct: 1287 LEAIRQLRAQAAYATTPIIAVTALAMPGDREQCLLAGATDYLTKPISLRRLARHIERLLT 1346
Score = 71.7 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 5/114 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ E + L + L + + V G A ++V L++ + +P+ G E+
Sbjct: 1100 LIIESSAVVAEQLARYLAEQNIQPVVWLYGNGAVEQVAAMRPDLIVLSVEIPDRSGWEIL 1159
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ V+ ++ A L KP + L ++++
Sbjct: 1160 ADLQRDPELRRIPVIVVSVVDEPE---RGFTAGAAAYLVKPINRAMLQQALSQI 1210
>gi|28868014|ref|NP_790633.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28851250|gb|AAO54328.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|331018350|gb|EGH98406.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 254
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D +R L L + ++V + + A + +R++PF +++ D+++P+ DG E
Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ V+ +T A L+KPF R+LV +N +L +
Sbjct: 72 LCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128
>gi|295677877|ref|YP_003606401.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295437720|gb|ADG16890.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 246
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ + +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|266619369|ref|ZP_06112304.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
gi|288869086|gb|EFD01385.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
Length = 235
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ ++ + L GY+V NN D + + L+L DI+MP
Sbjct: 1 MSETTNILVVDDEKEIAELVEIYLVSDGYKVFKANNAMDGLDILDKNEIHLVLLDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ R+ E + ++ ++ ++ + ++KPF+ +L V L
Sbjct: 61 MDGMEMCRKIRETN-NIPIIMLSAKSTDLDKIMGLGTGADDYVTKPFNPLELTARVKSQL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|262044459|ref|ZP_06017518.1| OmpR family transcriptional regulatory protein [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|330010607|ref|ZP_08306835.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
gi|259038189|gb|EEW39401.1| OmpR family transcriptional regulatory protein [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328534457|gb|EGF61050.1| response regulator receiver domain protein [Klebsiella sp. MS 92-3]
Length = 252
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R ++ L K+GY NG + + ++ L++ DI+MP DG+
Sbjct: 12 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 71
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ V+ +T + L KPF R+L+ + +L
Sbjct: 72 LCRQLRANPQQDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 129
>gi|254720504|ref|ZP_05182315.1| Probable transcriptional regulator ycf27 [Brucella sp. 83/13]
gi|265985535|ref|ZP_06098270.1| two-component system response regulator [Brucella sp. 83/13]
gi|306838128|ref|ZP_07470985.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
gi|264664127|gb|EEZ34388.1| two-component system response regulator [Brucella sp. 83/13]
gi|306406865|gb|EFM63087.1| transcriptional regulator ycf27 [Brucella sp. NF 2653]
Length = 238
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRDLLHEFLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 61 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|227872060|ref|ZP_03990437.1| response regulator [Oribacterium sinus F0268]
gi|227842091|gb|EEJ52344.1| response regulator [Oribacterium sinus F0268]
Length = 233
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY+V N + +E L+L D++MP M+G+E+
Sbjct: 6 ILVVDDEKEIAELVEIYLVSDGYKVFKAYNAEEGLQILSQEEIHLVLLDVMMPGMNGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E ++ V+ ++ + ++KPF+ +L V L
Sbjct: 66 CRKIRE-SSNIPVIMLSAKSEDLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120
>gi|256420288|ref|YP_003120941.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256035196|gb|ACU58740.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 234
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL EDD ++ K L +AGY+VV +G A+++ + F + L D+VMP+ D
Sbjct: 1 MKARILLVEDDQNVGAVTKKRLEEAGYDVVHSTDGQMAWEQFQSRTFDICLLDVVMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA + + + ++F+T A ++KPF +++L+ + L
Sbjct: 61 GFTLAEQIRRKNDFIPILFLTSKALDEDKIKGFKTGADDYITKPFSMQELLLRIEVFLKR 120
>gi|228956988|ref|ZP_04118764.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228802687|gb|EEM49528.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 228
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|226312203|ref|YP_002772097.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226095151|dbj|BAH43593.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL +D+ + L L K GY V++ G A + + ++ D+++P++
Sbjct: 1 MS-TILLVDDEPQILEILSSYLQKEGYHVLTAQTGKEAVEMATTISLTCIILDLMLPDLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + + ++ +T + A L KPF R+LV V ++
Sbjct: 60 GEEVCVQIRKE-SRVPILMLTAKSGEADRIRGLTIGADDYLIKPFSPRELVARVRAVMRR 118
>gi|206891181|ref|YP_002249203.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206743119|gb|ACI22176.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 227
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + LI L +G+E ++GA +E L++ D+++P D
Sbjct: 1 MKKKILVVEDEPKLANLLIDYLKASGFEAFWLDDGARVIQWTKENCPDLIILDVMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T + KPF R+L+ V +
Sbjct: 61 GFEICREIRS-FSTIPIIMVTARIEEVDRIVGLELGADDYICKPFSPRELIARVKAIFRR 119
Query: 121 KN 122
N
Sbjct: 120 MN 121
>gi|254414285|ref|ZP_05028052.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196178960|gb|EDX73957.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 250
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 64/126 (50%), Gaps = 7/126 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDI 54
+ +IL+ ED+ +R L+ +L + GY+VV+ +G +A + E FSLL+ D+
Sbjct: 18 SNRILVVEDETLIREMLMLSLQEEGYDVVTAADGRTALTLLSEGDANDEECQFSLLILDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G++L R + ++ ++ A+ L+KPF +R+L+
Sbjct: 78 MLPQVNGLDLCRLIRYKGNSIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELIARC 137
Query: 115 NRLLTI 120
LL
Sbjct: 138 RALLRR 143
>gi|309774783|ref|ZP_07669805.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308917468|gb|EFP63186.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 236
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ +R + L GY V NG + E L + DI+MP MD
Sbjct: 1 MDHTILVVEDEKGIREAIQIYLKNQGYHVFLAENGQEGLEIANRETIHLAVVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + D ++F++ + ++KPF +L+ V L
Sbjct: 61 GITMTMEIRKKY-DFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRR 119
>gi|241888541|ref|ZP_04775849.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
gi|241864808|gb|EER69182.1| response regulator SaeR [Gemella haemolysans ATCC 10379]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L + GY++ N+G A +K + +SL++TDI+MP MD
Sbjct: 1 MMNKILLVDDEIEITEINKRYLEQGGYDIDIANDGKEALEKYKRNKYSLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L LD + +FIT + + + KPF R+LV V +L
Sbjct: 61 GYDLISEVQYLDTEQPFLFITAKTTEPDKIYALSMGADDYIVKPFSPRELVLRVRNILRR 120
>gi|228925531|ref|ZP_04088621.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228834132|gb|EEM79679.1| hypothetical protein bthur0010_2590 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 237
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD ++R L L + Y V + +G A + +S+++ D++MP++DGIE
Sbjct: 5 RILIADDDKEIRNLLKIYLERELYMVDTAIDGEVALQLFNQNNYSIVILDLMMPKVDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ +T + ++KPF + ++V V L+
Sbjct: 65 VCRKLRDKT-NVPILMLTAKDHAVDKILGLSIGADDYITKPFSIHEVVARVKALIRR 120
>gi|218234629|ref|YP_002369621.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218162586|gb|ACK62578.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|165869483|ref|ZP_02214142.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|227815305|ref|YP_002815314.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|254755431|ref|ZP_05207465.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|164714923|gb|EDR20441.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|227006071|gb|ACP15814.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
Length = 232
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|126652917|ref|ZP_01725060.1| Two-component response regulator ycbL [Bacillus sp. B14905]
gi|126590337|gb|EAZ84458.1| Two-component response regulator ycbL [Bacillus sp. B14905]
Length = 230
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD+ +R + L G+EV + NNG A + F L++ DI++P+++
Sbjct: 1 MQKHILLVEDDEAIREMVANFLLLEGFEVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E L ++ ++ + ++KPF + + V ++
Sbjct: 61 GLEVLKVIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRR 119
>gi|118476337|ref|YP_893488.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118415562|gb|ABK83981.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ M L L GY V +G A + F +L DI+M +MDG E
Sbjct: 4 ILLVDDEPRMLELLTLYLTPIGYNCVCAVSGEEAISHIENRNFKFILLDIMMRKMDGWET 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R ++ ++ +T ++KPFH +L + +L N
Sbjct: 64 CKRIRS-FSNVPIIMVTARDQTVDVIQGLKLGADDYVTKPFHEEELFARIEAVLRRTN 120
>gi|86749084|ref|YP_485580.1| two component transcriptional regulator [Rhodopseudomonas palustris
HaA2]
gi|86572112|gb|ABD06669.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris HaA2]
Length = 240
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD + R + K L VV+ +G ++ ++ L++ D+++P DG+
Sbjct: 7 HILVVEDDRETRALIAKYLRNNECHVVTAQDGREMDSRLSDQRVDLVVLDVMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L RR P L ++ +T L+KPF+ R+L+ + +L ++
Sbjct: 67 LCRRVRASSP-LPIIMLTARGEDVDRILGLEMGADDYLAKPFNPRELLARIRSVLRRQS 124
>gi|95931004|ref|ZP_01313732.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95132900|gb|EAT14571.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 454
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 61/118 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ +D+ +R L ++L K GY V + +G A D VR + L+ DI +P +DG
Sbjct: 3 NYRVLVVDDEHLIRWSLEQSLKKQGYHVQTVGSGEEALDYVRSDSPDLVFLDIQLPGIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE + E+D D+ V+ IT + + ++KPF+L +L + + L
Sbjct: 63 IETLEKIKEIDSDISVIMITALGVLETAVKAMQLGAYDYINKPFNLDELSVVLRKALE 120
>gi|332828064|gb|EGK00786.1| hypothetical protein HMPREF9455_03060 [Dysgonomonas gadei ATCC
BAA-286]
Length = 221
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ ED+ + FL + L + GY + +G + R E L+L D V+P+MDGI
Sbjct: 2 QHILIIEDEPGIYTFLKQGLEEEGYSISIAVDGEQGVELFRTEKPDLILLDWVLPKMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ + + D ++ ++F+T V + + KPF +L+ +
Sbjct: 62 DVCKAIRQEDINIPILFLTARDTVQDTIEGLQCGANDYIKKPFSFEELLERIK 114
>gi|302566228|pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
gi|302566229|pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++P D
Sbjct: 1 MNVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T + V L KPF LR+L+ V L+
Sbjct: 61 GWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|153868803|ref|ZP_01998544.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152074620|gb|EDN71457.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 326
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K IL+ +D+ L + + GY +G A ++E+ L+L DI+MP+
Sbjct: 1 MKKKPTILIVDDNPTNLGVLGSIIAENGYLPGFATSGIEALAYLKEKHPKLILLDIMMPD 60
Query: 59 MDGIELARRATE---LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+ RR + L ++ ++F+T ++KPF+ +L+ +N
Sbjct: 61 MDGFEVCRRLRQNATLAANIPIIFLTAKTEKEDVITGLELGAVDYVTKPFNKNELLTRIN 120
Query: 116 RLLTIK 121
L ++
Sbjct: 121 THLELQ 126
>gi|104783427|ref|YP_609925.1| response regulator ColR [Pseudomonas entomophila L48]
gi|95112414|emb|CAK17141.1| response regulator ColR [Pseudomonas entomophila L48]
Length = 227
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|329935953|ref|ZP_08285754.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329304560|gb|EGG48437.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|329768144|ref|ZP_08259649.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
gi|328838055|gb|EGF87674.1| transcriptional regulatory protein walR [Gemella haemolysans M341]
Length = 234
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + L L K GY+V+ N+G A + E L+L D+++P+
Sbjct: 1 MAEYKILVVDDEEPIANILDFNLKKEGYDVIVANDGEKAVELAFSENPDLILLDLMLPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 DGMEVCREVRAK-KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|300313665|ref|YP_003777757.1| two component transcription regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300076450|gb|ADJ65849.1| two component transcription regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 240
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD D+R L L A Y + G + + E +++ D++MP DG+E
Sbjct: 6 HVLIVDDDPDIRHLLADYLEAASYRPFTAAGGQEMWRILGSERIDIIILDLMMPGEDGLE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + L KPF R+L+ + +L
Sbjct: 66 LCRELRKKR-NTPLVMLTARGTLIDRIVGLEVGADDYLPKPFDPRELLARIKVILRR 121
>gi|322417814|ref|YP_004197037.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320124201|gb|ADW11761.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 224
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + YEV + +G E+PF L++ D ++P+ DG+
Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLVVLDWMLPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T +V + L+KPF +L+ V L+
Sbjct: 62 VLKELRERKNVTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118
>gi|237715359|ref|ZP_04545840.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262405201|ref|ZP_06081751.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|229444668|gb|EEO50459.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262356076|gb|EEZ05166.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
Length = 1384
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED++++ + + + L + Y V + NG + E L+++D++MPEMDG
Sbjct: 1127 KHSVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDG 1185
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE + + V+ +T ++ +SKPF+L L + LL
Sbjct: 1186 IEFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLK 1245
Query: 120 IK 121
K
Sbjct: 1246 YK 1247
>gi|154503112|ref|ZP_02040172.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
gi|153796106|gb|EDN78526.1| hypothetical protein RUMGNA_00936 [Ruminococcus gnavus ATCC 29149]
Length = 231
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + GY V+ +G A D ++ +L++ D++MP+
Sbjct: 7 MDKTKILVVDDESRMRKLVKDFLVRQGYTVLEAADGMEAMDYFYEDKDIALIILDVMMPK 66
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + + ++ +T + + +SKPF + LV V +L
Sbjct: 67 MDGWQVCREIR-MHSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAIL 125
Query: 119 TI 120
Sbjct: 126 RR 127
>gi|10281108|gb|AAG15433.1|AF189161_1 putative response regulator [Streptomyces coelicolor]
Length = 228
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 64 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 122
>gi|323485737|ref|ZP_08091073.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
WAL-14163]
gi|323693077|ref|ZP_08107296.1| DNA-binding response regulator ResD [Clostridium symbiosum
WAL-14673]
gi|323400917|gb|EGA93279.1| hypothetical protein HMPREF9474_02824 [Clostridium symbiosum
WAL-14163]
gi|323502831|gb|EGB18674.1| DNA-binding response regulator ResD [Clostridium symbiosum
WAL-14673]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
K+L+ +D+ MR+ + L G+ VV +G A D ++ +L+L D++MP+MDG
Sbjct: 5 KVLVVDDEARMRKLVRDFLTVKGFLVVEAGDGEEAIDIFFEQKDIALILLDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R + + ++ +T + + +SKPF + LV V +L +
Sbjct: 65 EVCRTIRK-YSQVPIIMLTARGEEQDELQGFSLGVDEYISKPFSPKILVARVEAILRRSS 123
>gi|239930897|ref|ZP_04687850.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|229182901|ref|ZP_04310134.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228600525|gb|EEK58112.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + ++L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|193212324|ref|YP_001998277.1| two component transcriptional regulator, winged helix family
[Chlorobaculum parvum NCIB 8327]
gi|193085801|gb|ACF11077.1| two component transcriptional regulator, winged helix family
[Chlorobaculum parvum NCIB 8327]
Length = 236
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ L L KAGY + G A +++R+ +++L DI++P +DG E
Sbjct: 5 TILIVEDDRNLAGLLKYNLEKAGYSCLHAATGEEALEQLRQHAVNMVLLDIMLPGIDGFE 64
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + DL ++ +T + KPF R+L + +L
Sbjct: 65 VCRRIRQDVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAILKR 123
>gi|167746545|ref|ZP_02418672.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
gi|317471367|ref|ZP_07930721.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|167653505|gb|EDR97634.1| hypothetical protein ANACAC_01255 [Anaerostipes caccae DSM 14662]
gi|316901118|gb|EFV23078.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 228
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + + +L + EV +G A +E + ++L D+++P++ G
Sbjct: 2 KKVLVVDDEKLIVKGIKFSLEQDEMEVDCAYDGEEALGLAKENQYDIILLDVMLPKLTGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + ++ +T ++KPF++ ++ + +L
Sbjct: 62 EVCQAIRE-FSTVPIIMLTAKGDDMDKILGLEYGADDYVTKPFNILEVKARIKAILRR 118
>gi|118476259|ref|YP_893410.1| response regulator [Bacillus thuringiensis str. Al Hakam]
gi|118415484|gb|ABK83903.1| response regulator [Bacillus thuringiensis str. Al Hakam]
Length = 232
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + ++L D++MPEMDG
Sbjct: 9 NMRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDVILLDVMMPEMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 68 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 126
>gi|118478544|ref|YP_895695.1| vancomycin response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118417769|gb|ABK86188.1| vancomycin response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 234
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 4 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNAIDLAILDIMLPDVS 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ E ++ +T ++KPF +L+ V L
Sbjct: 64 GLTICQKIREKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 122
>gi|29346142|ref|NP_809645.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|29338037|gb|AAO75839.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
Length = 231
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +LL ED+ + + L + G+ + + ++G E +L+ D++MP
Sbjct: 1 MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 KMDGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 120
Query: 118 L 118
+
Sbjct: 121 M 121
>gi|150389689|ref|YP_001319738.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949551|gb|ABR48079.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 224
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+D +R ++ L + GY+V+ +G A + + L++ DIV+P++D
Sbjct: 1 MN-KILVVEDEDILREVIMDYLIEEGYQVLEAADGEQALELFQSHSVDLVILDIVLPKID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + RR + + ++ ++ +T + + L KP+ R L+ +V R L
Sbjct: 60 GWSVCRRIRK-NSNIPIIMLTARSDEDDSLLGYELGADDYLIKPYSPRVLMVKVKRFLE 117
>gi|186686259|ref|YP_001869455.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186468711|gb|ACC84512.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 236
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ + +L K G+ +G +A +E+P L++ D+++P +DG+E+
Sbjct: 3 ILIVEDEPEIAHLIQLSLEKEGFFCRISRDGINALRMFQEQPPDLIILDLMIPGLDGLEV 62
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D ++ +T + + KPF R+L+ V LL
Sbjct: 63 CARIRQKPGTKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELIARVRALLRR 120
>gi|333023057|ref|ZP_08451121.1| putative two-component system, response regulator [Streptomyces sp.
Tu6071]
gi|332742909|gb|EGJ73350.1| putative two-component system, response regulator [Streptomyces sp.
Tu6071]
Length = 250
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ EDD +R L ALG AGY V S +G +A + L++ D+++P+ DG
Sbjct: 14 HTVLVVEDDASIRTLLTTALGAAGYTVASAVDGQAAMFQAGSRRPDLIVLDVMLPDTDGF 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+F+T A V + ++KPFH+++++ V +L
Sbjct: 74 RLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKPFHVQEVLLRVRAILRR 131
>gi|331086930|ref|ZP_08336007.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410096|gb|EGG89531.1| hypothetical protein HMPREF0987_02310 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 226
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MDG+E
Sbjct: 2 RLLIVEDEKQICDMVAKSLYAAGYEVDTCYDGKEALECILSENYDLIVLDLNLPGMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + + KV+ ++ +A + + KPFHL++L + L K
Sbjct: 62 LLKELRKYNDETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 119
>gi|217969666|ref|YP_002354900.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
gi|217506993|gb|ACK54004.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
Length = 256
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD D+R+ L L K G + +G + L++ D++MP DG
Sbjct: 4 SDHILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPGEDG 63
Query: 62 IELARRATEL---DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L R + ++ +T L+KPF R+L + +L
Sbjct: 64 LTLCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIRAVL 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|225850505|ref|YP_002730739.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
gi|225645423|gb|ACO03609.1| transcriptional activator protein IrlR [Persephonella marina EX-H1]
Length = 218
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + L + L GY V + +G A D + + L++ DI++P++DG +
Sbjct: 2 KILIVEDNVQLNDTLKEVLEINGYLVDTAFDGEEALDYLNATEYDLIILDIMLPKIDGYQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + A + + ++ +T + L KPF + +L+ V L+
Sbjct: 62 VCQLARDKGINTPILMLTAKDRLEDKVKGLDIGADDYLVKPFEIDELIARVRALIRR 118
>gi|78221776|ref|YP_383523.1| two component, sigma54 specific, Fis family transcriptional
regulator [Geobacter metallireducens GS-15]
gi|78193031|gb|ABB30798.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter metallireducens GS-15]
Length = 457
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ +R L + L K GYEVVS NG A VR+E L+L DI +P +
Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYEVVSAGNGEDALRLVRDEQPDLVLLDIQLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ + E D ++ V+ +T A+ + ++KPF+L ++ + + L
Sbjct: 61 SGLDVLEKIKEHDEEIIVIMVTAHGALETAVHAMRLGAFDYINKPFNLDEMAIVIRKALE 120
>gi|307331346|ref|ZP_07610467.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|297159902|gb|ADI09614.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
gi|306883024|gb|EFN14089.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 225
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E ++G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFRETKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|319642327|ref|ZP_07996985.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317386050|gb|EFV66971.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1343
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ ED+ ++R+F+ + L Y VV +G A +K+ EE ++TDI+MP MDGIE
Sbjct: 1087 KVMVVEDNAELRQFICEILSGT-YRVVGVADGVMALEKIEEEIPDFIITDIMMPRMDGIE 1145
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D+ ++ ++ ++V + KPF L + + L+ +
Sbjct: 1146 LIRHIKENVNTCDIPLIILSAKSSVEDRIQCLQLGIDDYIPKPFSSDYLKSRIENLIRQR 1205
>gi|316933148|ref|YP_004108130.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris DX-1]
gi|315600862|gb|ADU43397.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris DX-1]
Length = 240
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + R + K L V + +G + + L++ D+++P DG+ L
Sbjct: 8 ILVVEDDRETRALIAKYLRSNNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 68 CRKIRA-NSQLPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRRQ 123
>gi|73541850|ref|YP_296370.1| phosphate regulon transcriptional regulatory protein phoB
[Ralstonia eutropha JMP134]
gi|72119263|gb|AAZ61526.1| Phosphate regulon transcriptional regulatory protein phoB
[Ralstonia eutropha JMP134]
Length = 235
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G A+ + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GATFAKELRANDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|22298592|ref|NP_681839.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22294772|dbj|BAC08601.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 214
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL +DD ++ + L GY V++ +G ++++ L++ D++MP+MDG
Sbjct: 10 SATILLVDDDPNLVLLVKDYLEMQGYRVLTAAHGNEGLAMLQQQTPDLVICDVMMPQMDG 69
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L V+F++ L KPF +L+ ++ LL
Sbjct: 70 YSFVSAVRQQTHLSWLPVLFLSAKGQTHDRIKGLQTGGDVYLVKPFEPEELLAQIQALLK 129
>gi|329769297|ref|ZP_08260713.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
gi|328839100|gb|EGF88685.1| transcriptional regulatory protein walR [Gemella sanguinis M325]
Length = 233
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + + L L K GY+V+ N+G A E L+L D+++PE
Sbjct: 1 MAEYKILVVDDEEPIAKILDFNLRKEGYDVIVANDGEKAVKLAFSEDPDLILLDLMLPEK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 DGMEVCREVRAQ-KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|307243929|ref|ZP_07526054.1| response regulator receiver domain protein [Peptostreptococcus
stomatis DSM 17678]
gi|306492751|gb|EFM64779.1| response regulator receiver domain protein [Peptostreptococcus
stomatis DSM 17678]
Length = 227
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ EDD ++ + L Y V + NG K +E + +++ DI MP +
Sbjct: 1 MNRQRILIVEDDKEILELTAEFLQAKNYLVDTATNGVECIKKFKESKYDMIILDIKMPNL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + ++ ++F+T + + ++KPF L+ + +L
Sbjct: 61 DGHTTCKMIR-NTSNIPIIFLTALSDESDQIKGFELGCDDYITKPFSFNLLLKRLEAVLR 119
Query: 120 IKN 122
+
Sbjct: 120 RSH 122
>gi|302388283|ref|YP_003824105.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302198911|gb|ADL06482.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV N+G E F L++ D+++P +D
Sbjct: 1 MS-RILIVEDEESIAELEKDYLELSGFEVEIENDGEQGLHMALHEDFDLVILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E+ + ++ ++ ++KPF ++V V L
Sbjct: 60 GFEICRKVREV-KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLAR 118
>gi|317127472|ref|YP_004093754.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315472420|gb|ADU29023.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 236
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ EDD+D+R L K YEV + +G + V+ L+L DI++P M
Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + + ++F++ + L+KPF +L + L
Sbjct: 61 GYEICQKIR-MLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRR 119
>gi|269124961|ref|YP_003298331.1| winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268309919|gb|ACY96293.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length = 226
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV + G A + L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYNLRKEGFEVAVASTGPDALEIFDRNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R ++ V+ +T + ++KPF R+L+ + +L
Sbjct: 60 GTEVCRELRAR-SNVPVIMLTAKDSEVDKVVGLELGADDYVTKPFSTRELIARMRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|261206781|ref|ZP_05921472.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289566983|ref|ZP_06447385.1| two-component response regulator colocalized with HrtAB transporter
[Enterococcus faecium D344SRF]
gi|294613962|ref|ZP_06693894.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
gi|260078911|gb|EEW66611.1| response regulator receiver:Transcriptional regulatory protein
[Enterococcus faecium TC 6]
gi|289161218|gb|EFD09116.1| two-component response regulator colocalized with HrtAB transporter
[Enterococcus faecium D344SRF]
gi|291593156|gb|EFF24733.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1636]
Length = 222
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMD
Sbjct: 1 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D+ V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|229193098|ref|ZP_04320053.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228590362|gb|EEK48226.1| Two-component response regulator [Bacillus cereus ATCC 10876]
Length = 229
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|213971081|ref|ZP_03399201.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
gi|301384196|ref|ZP_07232614.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
Max13]
gi|302060880|ref|ZP_07252421.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
K40]
gi|302132855|ref|ZP_07258845.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213924189|gb|EEB57764.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
Length = 254
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D +R L L + ++V + + A + +R++PF +++ D+++P+ DG E
Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ V+ +T A L+KPF R+LV +N +L +
Sbjct: 72 LCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128
>gi|332968994|gb|EGK08036.1| phosphate regulon transcriptional regulatory protein PhoB
[Psychrobacter sp. 1501(2011)]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE- 58
MN + IL+ ED+ +R ++ L +G+E + + A+++V + +++L D ++P
Sbjct: 1 MNTETILVVEDEPAIREMIVTTLEMSGFECLQAEDVNDAHNQVVDHRPAMILLDWMLPGN 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
GI+L RR E+ ++ ++ +T ++KPF R+LV+ +
Sbjct: 61 QSGIDLCRRLKKDEMLSEIPIIMLTARGEEDNKVQGLDAGADDYITKPFSTRELVSRIKA 120
Query: 117 LLTIKN 122
+L +
Sbjct: 121 VLRRSS 126
>gi|326567041|gb|EGE17164.1| two-component system response regulator [Moraxella catarrhalis
12P80B1]
Length = 240
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
MN++ILL EDD D+ + L YEV G D + +E SL++ D+++P+
Sbjct: 1 MNKQILLIEDDPDLAELISDYLSINYYEVHHAATGQGGLDILDTKERDISLIVLDLMLPD 60
Query: 59 MDGIELARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+E+ ++ + ++ +T ++KPF R+L+ +
Sbjct: 61 MDGMEVCQKVRGSKNTMINKVPIVMLTAKGDTTDRVLGLEMGADDYIAKPFEPRELLARI 120
Query: 115 NRLLTI 120
+L
Sbjct: 121 RAVLRR 126
>gi|290957320|ref|YP_003488502.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260646846|emb|CBG69943.1| putative two-component system response regulator [Streptomyces
scabiei 87.22]
Length = 222
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L K L GY V ++G + E + L++ DI++P M+G
Sbjct: 2 RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGVEGLHRASEGAYDLVILDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ D+ ++ +T + L+KPF LV V LL ++
Sbjct: 62 VCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRRH 120
>gi|305666163|ref|YP_003862450.1| response regulator DrrA [Maribacter sp. HTCC2170]
gi|88707661|gb|EAQ99902.1| response regulator DrrA [Maribacter sp. HTCC2170]
Length = 228
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY+V + NNG K +++ L++ D++MP
Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYQVFTANNGVEGVAKAKKKQPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + D + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACEIIRKTVGLEDTIITFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|319944548|ref|ZP_08018818.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
51599]
gi|319742184|gb|EFV94601.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
51599]
Length = 248
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD ++R L + L + G V + E +++ D++MP DG+
Sbjct: 16 HVLVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLMMPGEDGLT 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+ +T A L KPF R+L+ + +L
Sbjct: 76 VCRELRSR-SNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRR 131
>gi|297154252|gb|ADI03964.1| two component system transcriptional regulator PhoP [Streptomyces
bingchenggensis BCW-1]
Length = 249
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ EDD +R L ALG +GY+V S G A V LLL D+++P++DG
Sbjct: 10 THRILVVEDDPGIRLLLESALGLSGYQVSSAATGHDALLGVERFRPDLLLLDVMLPDLDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + V+F+T V + KPF + +++ + +L
Sbjct: 70 FEVTRSLRAVGVRTPVLFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRR 128
>gi|282896029|ref|ZP_06304060.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
gi|281199139|gb|EFA74009.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
Length = 250
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
++L+ ED++ +R L+ AL GYEVV+ +G A + +R E F LL+ D+++
Sbjct: 20 RVLIVEDEELIREMLVVALEGEGYEVVTAKDGRCAVELMRNLETQSGELSFDLLVLDLML 79
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R++V
Sbjct: 80 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 139
Query: 117 LLTIK 121
LL +
Sbjct: 140 LLRRQ 144
>gi|255034345|ref|YP_003084966.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254947101|gb|ACT91801.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1324
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+D +R F+ + + + NG E ++L+DI+MP+M+G
Sbjct: 1071 TNTILIVEDNDQLRVFIRELFESE-FNTLEAENGLRGLQLANEHLPDIVLSDIMMPDMNG 1129
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L + + V+ +T A + A L KPF R L +V L+
Sbjct: 1130 LQLCSHLKKNITTSHIPVVLLTARAQNQQIIEGLASGADDYLVKPFDPRILELKVRNLIR 1189
Query: 120 IKN 122
+++
Sbjct: 1190 LRD 1192
>gi|229175245|ref|ZP_04302760.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
MM3]
gi|228608077|gb|EEK65384.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
MM3]
Length = 230
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVQAFFKSSFDLVILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|196233947|ref|ZP_03132784.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196221996|gb|EDY16529.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 223
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 49/112 (43%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
EDD +R L AL GYEV C +GA A +R+ L++ DI++P G +L R
Sbjct: 2 EDDAHIRLGLCDALRGEGYEVSDCRDGAQALPIIRQRRPDLVVLDIMLPGKSGFDLCREL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ ++KPF LR+L+ V LL
Sbjct: 62 RAEKNCTPILMLSAKGQEVDKVVGLELGADDYVTKPFSLRELLARVQALLRR 113
>gi|58583289|ref|YP_202305.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84625120|ref|YP_452492.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188578384|ref|YP_001915313.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas oryzae pv. oryzae PXO99A]
gi|58427883|gb|AAW76920.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|84369060|dbj|BAE70218.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|188522836|gb|ACD60781.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas oryzae pv. oryzae PXO99A]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L D+ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKEQLTRDIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|17232219|ref|NP_488767.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17133864|dbj|BAB76426.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 238
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ + + +L K G+ + +G +A E P L++ D+++P +DG+E+
Sbjct: 3 ILIVEDESEIAQLIQHSLEKEGFSCRTSRDGINALQMFHERPPDLIILDLMIPGLDGLEV 62
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D ++ +T + + KPF R+LV V LL
Sbjct: 63 CARIRQKPGAKDPYILMLTAKGEEIDRVIGLSTGADDYMVKPFSPRELVARVRALLRR 120
>gi|298385504|ref|ZP_06995062.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
gi|298261645|gb|EFI04511.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
Length = 231
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +LL ED+ + + L + G+ + + ++G E +L+ D++MP
Sbjct: 1 MSKNDITVLLVEDELTLAMIIKDTLEENGFTIHTASDGEEGLHLFFELRPDVLVADVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 KMDGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 120
Query: 118 L 118
+
Sbjct: 121 M 121
>gi|293401928|ref|ZP_06646068.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304586|gb|EFE45835.1| regulatory protein VanR [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ ++ + L GY+V + A +++ P L + DI+MP+++
Sbjct: 1 MQTRILVLDDEKEIADLVTLYLKNEGYQVHEFYDSEDALRFIKDNPVDLAMLDIMMPKIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFEICKIIREKY-TFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRR 119
>gi|256787359|ref|ZP_05525790.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|237714601|ref|ZP_04545082.1| two-component system response regulator [Bacteroides sp. D1]
gi|262406466|ref|ZP_06083015.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|294647765|ref|ZP_06725320.1| response regulator receiver domain protein [Bacteroides ovatus SD
CC 2a]
gi|294808589|ref|ZP_06767331.1| response regulator receiver domain protein [Bacteroides
xylanisolvens SD CC 1b]
gi|229445370|gb|EEO51161.1| two-component system response regulator [Bacteroides sp. D1]
gi|262355169|gb|EEZ04260.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|292636902|gb|EFF55365.1| response regulator receiver domain protein [Bacteroides ovatus SD
CC 2a]
gi|294444213|gb|EFG12938.1| response regulator receiver domain protein [Bacteroides
xylanisolvens SD CC 1b]
gi|295083997|emb|CBK65520.1| two component transcriptional regulator, winged helix family
[Bacteroides xylanisolvens XB1A]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++
Sbjct: 1 MMAKILLVEDEINIASFIERGLKEFGHTVTVCHDGNAGWKILQDEPFDLLILDIIMPKIN 60
Query: 61 GIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+EL R + V+ +T L KPF ++L + LL
Sbjct: 61 GLELCRLYRQTFGYQSPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|229105162|ref|ZP_04235813.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-28]
gi|228678343|gb|EEL32569.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-28]
Length = 230
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRR 119
>gi|229014012|ref|ZP_04171136.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229135662|ref|ZP_04264439.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228647760|gb|EEL03818.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228747268|gb|EEL97147.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y+V+ +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYKVLEARDGKEALVLFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|218903029|ref|YP_002450863.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|218538582|gb|ACK90980.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|262274965|ref|ZP_06052776.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
hollisae CIP 101886]
gi|262221528|gb|EEY72842.1| chitin catabolic cascade sensor histidine kinase ChiS [Grimontia
hollisae CIP 101886]
Length = 1125
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L GY V + NG A + V E +L+L D++MPE+ G E+
Sbjct: 719 ILVVDDEPVNLQILNNFLRLEGYRVKAVENGRQAIESVTMEKPALMLLDVMMPELSGYEV 778
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ ++ V L+KPF+ +L + +
Sbjct: 779 CTHLRERYSRAELPIIMLSALGQVQDKVKGFDAGANDYLTKPFNKDELSARIRAYIN 835
>gi|257439293|ref|ZP_05615048.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
gi|257198168|gb|EEU96452.1| regulatory protein VanR [Faecalibacterium prausnitzii A2-165]
Length = 242
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+AEDD D+R + L GY ++ NG A + R E L++ DI+MP M G+
Sbjct: 4 QTILIAEDDPDIRDGVRILLSGEGYHIIEAENGTRALEVFRPE-VDLVILDIMMPGMSGL 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L + ++F+T + + L KPF +L V LL
Sbjct: 63 RVCEELRKL-STVPILFLTAKSQESDKLLGLTAGGDDYLPKPFSFAELSARVKALLRR 119
>gi|302544907|ref|ZP_07297249.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
53653]
gi|302462525|gb|EFL25618.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
53653]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E ++G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVSDGDKALAAFREAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|118477643|ref|YP_894794.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|225864192|ref|YP_002749570.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|229184439|ref|ZP_04311645.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
BGSC 6E1]
gi|118416868|gb|ABK85287.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|225788434|gb|ACO28651.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228599018|gb|EEK56632.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
BGSC 6E1]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A + + L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMENFENGNWDLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|52144737|ref|YP_082091.1| response regulator [Bacillus cereus E33L]
gi|51978206|gb|AAU19756.1| probable response regulator [Bacillus cereus E33L]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|150014975|ref|YP_001307229.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149901440|gb|ABR32273.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 228
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L +GY NG A + E ++L D+++P +DGI+
Sbjct: 7 KVLIVDDDENISEVIDMYLKSSGYNTKIALNGKEAQEFYLEYNPDIVLLDVMIPYIDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ IT + + KPF ++L+ V +L
Sbjct: 67 ILKWIRKQ-KETPVIMITAKGDTFDKVLALEIGADDYIVKPFEPKELLARVKAVLRR 122
>gi|150390626|ref|YP_001320675.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149950488|gb|ABR49016.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + IL+ +D++ + + L K G+ V++ +NG + + V+ L++ D+++P +
Sbjct: 1 MNGKNILVVDDEEHIIELIKFNLEKNGFSVLTSDNGEESIELVKNNDVDLIVLDLMLPGI 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DGIE+ +R +D ++ +T ++KPF +R+LV + +
Sbjct: 61 DGIEVCKRIRRMDDYDKTPIIMLTAMGEETDRILGLELGADDYMTKPFSIRELVARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|257063841|ref|YP_003143513.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
gi|256791494|gb|ACV22164.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
Length = 234
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD +R + + + G++VV NG A + + L++ D++M +
Sbjct: 1 MPKTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + D L ++ ++ + ++KPF +LV N L
Sbjct: 61 GFEVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLRN 120
Query: 121 KN 122
++
Sbjct: 121 RS 122
>gi|225390635|ref|ZP_03760359.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
DSM 15981]
gi|225043320|gb|EEG53566.1| hypothetical protein CLOSTASPAR_04390 [Clostridium asparagiforme
DSM 15981]
Length = 235
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + + +L + G EV +G A + R+ + ++L D+++P+ DG E
Sbjct: 3 KILVVDDEKLIVKGIRFSLEQEGMEVDCAYDGEEAIELARKTEYDMVLLDVMLPKHDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D+ ++ +T +SKPF++ ++ + ++
Sbjct: 63 VCQAIRE-FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIMRR 118
>gi|164688051|ref|ZP_02212079.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
16795]
gi|164602464|gb|EDQ95929.1| hypothetical protein CLOBAR_01696 [Clostridium bartlettii DSM
16795]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE++ GA A +K+ E S+ L D+++P+M
Sbjct: 1 MKEKILVLEDEIGIRSFVSINLKREGYEIIEAGTGAEAIEKINENNDISIALLDVMLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + + + ++ +T A + + KPF +++L+ V LL
Sbjct: 61 SGIEVCKYIRQKFDQVGIIMLTAKAQEEDKLEGFISGADDYIVKPFSIKELLVRVAALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|126652337|ref|ZP_01724513.1| two-component response regulator [Bacillus sp. B14905]
gi|126590912|gb|EAZ85025.1| two-component response regulator [Bacillus sp. B14905]
Length = 224
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++R + L K G+ V ++G A P L++ DI+MP MD
Sbjct: 1 MT-TILVADDDANIRELVCLFLRKEGFATVEADDGKEALSIYHSTPVDLVVLDIMMPTMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ ++ +T L+KPF +L V LL
Sbjct: 60 GWTLCKELRRANAEIPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKR 119
>gi|159897333|ref|YP_001543580.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159890372|gb|ABX03452.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 236
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL ED+ + L L + GY V+S ++G + D R E LL+ D+++P++D
Sbjct: 1 MS-TILLVEDEALLADTLRYNLEREGYTVLSASDGVTGLDLARAEQPDLLILDVMLPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R ++ +M +T + KPF L +L+ V +L
Sbjct: 60 GFSVCRILRRET-NIPIMMLTARQDEVDRIAGLELGADDYVIKPFSLGELLARVRAILRR 118
>gi|325299779|ref|YP_004259696.1| integral membrane sensor hybrid histidine kinase [Bacteroides
salanitronis DSM 18170]
gi|324319332|gb|ADY37223.1| integral membrane sensor hybrid histidine kinase [Bacteroides
salanitronis DSM 18170]
Length = 1437
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++++R+F + L Y V+ NG + D +E ++++D++MPEMDGIE
Sbjct: 1175 TILLVEDNEELRKFTGRVLRHE-YRVLEAENGRAGLDMALKEIPDIIISDVMMPEMDGIE 1233
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ ++ A++ ++KPF L+ + L+ K
Sbjct: 1234 LLDIIKHNPSVCHIPVVVLSAKASLEDRIKGLEYGADGYITKPFSSAYLLARIKSLMRQK 1293
>gi|283851685|ref|ZP_06368964.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
gi|283573015|gb|EFC20996.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ EDD+D+ L L AG+ + +G A K R P + ++ D+++P +
Sbjct: 1 MSKDSILIVEDDEDIVELLAFNLQSAGFATETAKDGYEALTKARRTPPAGIILDLMLPGL 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ + ++ +T + KPF R+L+ + +
Sbjct: 61 DGFEVCKELKRDPKTAGAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|229090970|ref|ZP_04222194.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
gi|228692371|gb|EEL46106.1| DNA-binding response regulator [Bacillus cereus Rock3-42]
Length = 234
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +L+ V LL
Sbjct: 74 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELLVRVKALLKR 128
>gi|147676370|ref|YP_001210585.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146272467|dbj|BAF58216.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ ++ +FL L G+EV + +G +A + +++ +++ D++MP MDG E
Sbjct: 8 RVLLVDDEPNILQFLELGLQNEGFEVQTAQDGFTAINLMKQFQPHVVILDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R +++ ++ V+ +T V + KPF +L+ ++ ++N
Sbjct: 68 VCRMLKKME-NVAVIMLTARDEVDDRVKGLNIGADDYMVKPFSFEELLARIHA--RVRN 123
>gi|91779281|ref|YP_554489.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91691941|gb|ABE35139.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
Length = 248
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|75764446|ref|ZP_00743942.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488065|gb|EAO51785.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 73 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|113474513|ref|YP_720574.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110165561|gb|ABG50101.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1130
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
IL+ +D+ + L L Y+V +G A + F L+L DI+MP M G
Sbjct: 720 HILVVDDEPINIQVLNNYLKANNYQVTQALSGKEALAALENNHNFDLILLDIMMPNMTGY 779
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E P L V+ +T +A L+KPF +L+ + + +
Sbjct: 780 EVCSQIREKYPAQSLPVLMLTAKNQIADLVMGFQFGANDYLTKPFAKDELLTRIQTHIKL 839
>gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus
sp. CB0205]
Length = 243
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+ V + +G + K +E ++++D++MP +DG
Sbjct: 18 RLLLVDDEPGLRTAVQAYLEDEGFVVTTAVDGEDGWAKAQELLPDVVISDVMMPRLDGYG 77
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ E + V+F+T A + + KPF +LV V+ ++ +
Sbjct: 78 LLRKLREDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDELVARVHNVVKRQ 137
>gi|312879868|ref|ZP_07739668.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
gi|310783159|gb|EFQ23557.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
Length = 226
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ D+ + L + + Y V + G + ++ R F ++ D+++P MDG E
Sbjct: 2 KLLVIEDNHDLVQVLQEGFEEHDYAVEAAYEGETGLNRARSGEFDCIVLDVMLPGMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R E D V+ +T AV + L KPF ++L+ VN L+ +
Sbjct: 62 LIDRFREEGHDTPVIMLTAKDAVDDRVEGLNRGADDYLIKPFDFKELLARVNALIRRHS 120
>gi|229032474|ref|ZP_04188442.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228728843|gb|EEL79851.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|172036640|ref|YP_001803141.1| two-component transcriptional regulatory protein [Cyanothece sp.
ATCC 51142]
gi|171698094|gb|ACB51075.1| two-component transcriptional regulatory protein [Cyanothece sp.
ATCC 51142]
Length = 237
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L + ++ + +G +A D +++ L++ D+++P++DG+E
Sbjct: 2 KILIVEDEMEIAKIIQTTLERESFDCMVAYDGLTALDLFQQQAPDLIILDLMLPKLDGLE 61
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++ +T + L KPF +LV V LL
Sbjct: 62 VCTRIRQKVNTKDPYILMLTAKGEEIDRVIGLSTGADDYLVKPFSPIELVARVRALLRR 120
>gi|167630424|ref|YP_001680923.1| response regulator receiver modulated serine phosphatase
[Heliobacterium modesticaldum Ice1]
gi|167593164|gb|ABZ84912.1| response regulator receiver modulated serine phosphatase
[Heliobacterium modesticaldum Ice1]
Length = 394
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +D + L +AGY+V++ NG A + ++ L+L D++MP M+G
Sbjct: 9 SAQILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQRTLPDLILLDVMMPGMNG 68
Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ + E DP + V+ +T V +SKPF+ +L+ V LL
Sbjct: 69 FEVCAKLKE-DPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLTRVKSLL 127
Query: 119 TIK 121
I+
Sbjct: 128 RIR 130
>gi|218782319|ref|YP_002433637.1| response regulator receiver modulated diguanylate cyclase
[Desulfatibacillum alkenivorans AK-01]
gi|218763703|gb|ACL06169.1| response regulator receiver modulated diguanylate cyclase
[Desulfatibacillum alkenivorans AK-01]
Length = 301
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L G+EV NG + V L+L D++MP MDG +
Sbjct: 4 ILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVATIKPDLILLDLIMPGMDGYAV 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+ +T A A + ++KPF +LV VN L IK
Sbjct: 64 CEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEEGELVARVNTHLRIK 122
>gi|120434408|ref|YP_860117.1| two-component system sensor histidine kinase/response regulator
hybrid [Gramella forsetii KT0803]
gi|117576558|emb|CAL65027.1| two-component system sensor histidine kinase/response regulator
hybrid [Gramella forsetii KT0803]
Length = 1352
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R+++ L V+ NG A +++ + L+++DI+MP MDG+ L
Sbjct: 1108 ILIVEDNKEIRKYISGLLKPY-CRVIEVENGKEALEEITQNQPDLIISDIMMPIMDGVSL 1166
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ + V+ +T A + ++KPF+ L+ + LL +N
Sbjct: 1167 TRKLKTSTETSHIPVILLTARATSIQRMEGYETGADAYITKPFNEEMLMIRIKNLLRNRN 1226
>gi|30022879|ref|NP_834510.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|229130093|ref|ZP_04259054.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|29898438|gb|AAP11711.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|228653308|gb|EEL09185.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|309791478|ref|ZP_07685982.1| response regulator receiver [Oscillochloris trichoides DG6]
gi|308226475|gb|EFO80199.1| response regulator receiver [Oscillochloris trichoides DG6]
Length = 407
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D + + AL GY++ + G A D+ L + D++MP++DG E
Sbjct: 7 RILIVDDTPLNLKMVSAALASGGYQIETATTGHMALDRAVTFRPDLFILDVMMPDIDGYE 66
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T + +SKPF +L V LL
Sbjct: 67 VCRRLRRMTTFAQHPILMLTANDTLEERVRGLEAGADDYMSKPFQPIELQARVKALLRR 125
>gi|240143855|ref|ZP_04742456.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
gi|257204143|gb|EEV02428.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
Length = 195
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + L + YEV+ +G +A D +E+ +L++ D++MP+
Sbjct: 1 MEKIKILVVDDESRMRKLVRDFLVREDYEVLEAGDGEAALDIFYQEKNIALIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G E+ R E + ++ +T + +SKPF + LV V +L
Sbjct: 61 MNGWEVCREIRE-TSKVPIIMLTAKGDEEDELTGFELGVDEYISKPFSPKILVARVGAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|29831606|ref|NP_826240.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29608722|dbj|BAC72775.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|294638284|ref|ZP_06716537.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
23685]
gi|291088537|gb|EFE21098.1| transcriptional regulatory protein CpxR [Edwardsiella tarda ATCC
23685]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+EV+ ++G A + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLQELLDLEGFEVIVAHDGEQALAMLDA-SIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
+
Sbjct: 118 SS 119
>gi|163746354|ref|ZP_02153712.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanibulbus indolifex HEL-45]
gi|161380239|gb|EDQ04650.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanibulbus indolifex HEL-45]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L G+EV +G A V E L++ D +MP M GIE+
Sbjct: 8 VLLVEDEPAQREVLAYNLEAEGFEVRRAEDGEEAMLLVSEAAPDLVILDWMMPLMSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E + V+ ++ + + KP++LR+L+ V L
Sbjct: 68 CRQLKTRESTRHIPVIMLSARSEEVDTVRGLETGADDYVIKPYNLRELMARVRTQLRR 125
>gi|29830024|ref|NP_824658.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607134|dbj|BAC71193.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAEGHTIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|87122638|ref|ZP_01078515.1| Two comoponent transcriptional regulator, winged helix family
protein [Marinomonas sp. MED121]
gi|86162096|gb|EAQ63384.1| Two comoponent transcriptional regulator, winged helix family
protein [Marinomonas sp. MED121]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLA+DD + + + GYEV+ NG A D + ++ L++ D++MPE+DG E
Sbjct: 3 KLLLADDDARLSDLIKEYFSGEGYEVLHAWNGVEALDLLVKQSPDLVILDVMMPELDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T LSKPF+ R+L+ + +L
Sbjct: 63 TLKLIRAK-SKVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118
>gi|297160739|gb|ADI10451.1| two component transcriptional regulator, winged helix family
protein [Streptomyces bingchenggensis BCW-1]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +R L + L + G+ V + +G R ++ ++ D+++P + G +
Sbjct: 2 RILVVEDDARLRELLKEGLEQEGFTVETAGDGRDGLALARGTEYAAIVLDVMLPGLSGYQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E ++ +T D L+KPF L+ V L+
Sbjct: 62 VCSRLREAGVWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSYVVLIARVRALVRR 118
>gi|294645151|ref|ZP_06722874.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294807005|ref|ZP_06765824.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|292639482|gb|EFF57777.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294445704|gb|EFG14352.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1397
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED++++ + + + L + Y V + NG + E L+++D++MPEMDG
Sbjct: 1140 KHSVLVIEDNEELLQLMTRLLKRE-YNVFTAENGKEGISVLENEDIDLIVSDVMMPEMDG 1198
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE + + V+ +T ++ +SKPF+L L + LL
Sbjct: 1199 IEFCKYVKSNLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLPVLYARIRNLLK 1258
Query: 120 IK 121
K
Sbjct: 1259 YK 1260
>gi|256819054|ref|YP_003140333.1| two component transcriptional regulator, winged helix family
[Capnocytophaga ochracea DSM 7271]
gi|256580637|gb|ACU91772.1| two component transcriptional regulator, winged helix family
[Capnocytophaga ochracea DSM 7271]
Length = 251
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL EDD + L L +G++V NG ++K ++E + + + D++MP DG
Sbjct: 16 NKHILLVEDDPNFGTVLKDYLVMSGFDVTLAKNGMEGFEKFKKETYDMCILDVMMPYKDG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E D + ++F+T L+KPF L+ ++ +L K
Sbjct: 76 FTLAKEIREKDEKIPIIFLTARTMREDVIKGYRSGADDYLNKPFDSEILLMKIRSILQRK 135
Query: 122 N 122
+
Sbjct: 136 S 136
>gi|89076062|ref|ZP_01162422.1| osmolarity response regulator [Photobacterium sp. SKA34]
gi|89048214|gb|EAR53796.1| osmolarity response regulator [Photobacterium sp. SKA34]
Length = 239
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S NG + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLFEQGFQVRSVANGEQMDRLLARETFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRNANNMLPILMLTAKGDEVDRIVGLEVGADDYLPKPFNPRELLARIRAVLRRQ 123
>gi|271962512|ref|YP_003336708.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270505687|gb|ACZ83965.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G A D L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEALDTFDRNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRSLRQR-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|89896435|ref|YP_519922.1| hypothetical protein DSY3689 [Desulfitobacterium hafniense Y51]
gi|89335883|dbj|BAE85478.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 232
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + + L Y + NG A D + +E L + D+++P++D
Sbjct: 1 MAANILIVDDEQAIADLVEVYLKNENYNLFKFYNGKDALDCIEKEKLDLAILDVMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E + V+ +T ++KPF +L+ V L
Sbjct: 61 GFSICRQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 119
>gi|325662201|ref|ZP_08150816.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471453|gb|EGC74674.1| hypothetical protein HMPREF0490_01554 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 224
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ + L + L Y V SC +G +A D + + +++ DI+MP+ DG+
Sbjct: 2 RILIAEDERDLNKILAQRLIAEHYSVDSCMDGEAALDYLAGAEYDVVILDIMMPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + + V+ +T +V L KPF +L+ + LL
Sbjct: 62 VLREIRQKNKHVPVLLLTAKDSVEDRVRGLDAGANDYLVKPFAFEELLARIRVLLRR 118
>gi|228920689|ref|ZP_04084032.1| DNA-binding response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838990|gb|EEM84288.1| DNA-binding response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 234
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALQKMDDVKVDMVILDIMMPNMDGFD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 73 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVMRVKALLKR 128
>gi|229154275|ref|ZP_04282395.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228629099|gb|EEK85806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|228900580|ref|ZP_04064802.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
gi|228859063|gb|EEN03501.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
Length = 234
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 73 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|291544436|emb|CBL17545.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. 18P13]
Length = 224
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ ++R + + GYEV +G A + V+ + F +++ DI+MP +DG
Sbjct: 2 KRLLIVDDEANIRLVVKEYAEFEGYEVAEAEDGMQAVELVKSQDFDVIIMDIMMPRLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ ++ + KPF ++L+ V ++
Sbjct: 62 SACKEIKK-YKNIPVIMLSARGEEYDKLFGFELGIDDYVVKPFSPKELMARVKAVIKR 118
>gi|224537739|ref|ZP_03678278.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520662|gb|EEF89767.1| hypothetical protein BACCELL_02622 [Bacteroides cellulosilyticus
DSM 14838]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V NGA + ++EPF LL+ DI+MP+M+G++
Sbjct: 3 KILLVEDEVNIASFIERGLQEFGHTVSVAYNGADGWQLAQDEPFDLLVLDIIMPKMNGLD 62
Query: 64 LARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ +L D V+ +T L KPF ++L + LL
Sbjct: 63 LCRQYRQLYGYDSPVIMLTALGTTDDIVKGLYAGADDYLVKPFSFQELEARITALLRR 120
>gi|29655289|ref|NP_820981.1| transcriptional regulatory protein [Coxiella burnetii RSA 493]
gi|161829818|ref|YP_001595970.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
gi|29542561|gb|AAO91495.1| two-component response regulator [Coxiella burnetii RSA 493]
gi|161761685|gb|ABX77327.1| transcriptional regulatory protein [Coxiella burnetii RSA 331]
Length = 245
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L K L + G+E +G+ + ++ L++ DI+MP DG+
Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +T + LSKPF+ R+L+ V +L
Sbjct: 66 LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>gi|329941091|ref|ZP_08290370.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329299622|gb|EGG43521.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRSEGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|237793685|ref|YP_002861237.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|229263015|gb|ACQ54048.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 234
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ ++R + L GY + +NG A + ++ L++ DI+MP+M
Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKASNGIEALELLKTNNVHLIILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E + ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIEACMKIREEKS-MPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|302551833|ref|ZP_07304175.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302469451|gb|EFL32544.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 229
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRESKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|289178119|gb|ADC85365.1| YycF [Bifidobacterium animalis subsp. lactis BB-12]
Length = 255
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ L+ L + GYE G A++ E F L+L D+++P +
Sbjct: 21 MT-RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGIS 79
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR EL + ++ +T + ++KP+ R+L+ ++ +L
Sbjct: 80 GTTLCRRMHELRR-VPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 138
>gi|220915559|ref|YP_002490863.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219953413|gb|ACL63797.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 230
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD + R L LG GY V S +G + R E L++ D+++P M
Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
G+E+ R + DP+L ++ ++ L KPF L++L+ +
Sbjct: 61 GLEVIREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114
>gi|206977756|ref|ZP_03238647.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217962018|ref|YP_002340588.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229141265|ref|ZP_04269803.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST26]
gi|206744057|gb|EDZ55473.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217065662|gb|ACJ79912.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228642046|gb|EEK98339.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST26]
Length = 230
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|24375869|ref|NP_719912.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
gi|24350836|gb|AAN57356.1|AE015872_7 DNA-binding response regulator [Shewanella oneidensis MR-1]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AEDD +R+ L L + GY V+ +NG A K ++E ++ DI+MPE+DG
Sbjct: 2 KILIAEDDIHIRQGLADMLSREGYSVLLADNGKVALLKYQQEQPDFIILDIMMPELDGYS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D V+F++ ++KPF + ++ + +
Sbjct: 62 VCKEIRKHDEQTPVIFLSAKGEELDKVLGLELGADDYINKPFGIHEVRARIKTIARR 118
>gi|94311118|ref|YP_584328.1| two component transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93354970|gb|ABF09059.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Cupriavidus metallidurans CH34]
Length = 235
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G A+ + + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GATFAKELRNNDRTKQIPIIMLTARSEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|298482083|ref|ZP_07000271.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298271640|gb|EFI13213.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1458
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1201 ILVVEDNEELKAFLKNILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1259
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L + LL +
Sbjct: 1260 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQR 1318
>gi|297193412|ref|ZP_06910810.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151766|gb|EFH31343.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 247
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA A VRE ++ DI++P+MDG+
Sbjct: 23 RVLVVDDEAPLSELLSMALRYEGWEVRSAGDGAGAVRTVREFRPDAVVLDIMLPDMDGLA 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 83 VLGRLRREAPDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 139
>gi|295109722|emb|CBL23675.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 227
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K + V+ +G A D E+ +LL+ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + + ++ +T + +SKPF + LV V +L
Sbjct: 65 EVCREIRK-NSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121
>gi|295398647|ref|ZP_06808671.1| response regulator [Aerococcus viridans ATCC 11563]
gi|294973082|gb|EFG48885.1| response regulator [Aerococcus viridans ATCC 11563]
Length = 235
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ ++ RF+ L GYE +G +K +E + L+L D+++PE++GI
Sbjct: 7 KRILIVEDEKNLARFVELELKHEGYETELAKDGRIGLEKAQEGNWDLILLDLMLPEINGI 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR D+ ++ +T +V + KPF + +L+ + LL
Sbjct: 67 EVCRRLRP-TSDVPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 123
>gi|291556132|emb|CBL33249.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium siraeum
V10Sc8a]
Length = 235
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ ++ + L GY V NG A + + L + D+++P++D
Sbjct: 1 MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGMDALKCIESQNLDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFRICQKIREQYYY-PIIMLTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|206974047|ref|ZP_03234965.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|206748203|gb|EDZ59592.1| DNA-binding response regulator [Bacillus cereus H3081.97]
Length = 231
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 1 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDEALQMISTYEIELMILDIMMPKRN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 61 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 244
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + G+ V + +G ++K + E ++L+D++MP +DG
Sbjct: 19 RVLLVDDEPGLRTAVQAYFEDEGFIVSTAADGEEGWEKAQSEVPDVVLSDVMMPRVDGFG 78
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T A + KPF +LV V ++ +
Sbjct: 79 LLKLLREDERLGGTPVIFLTAKGMTADRIAGFRAGVDDYIPKPFDPDELVARVRNVVQRQ 138
>gi|258591258|emb|CBE67555.1| Two-component response regulator (fragment) [NC10 bacterium 'Dutch
sediment']
Length = 329
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ L + GYEV+S +G A V P L+L DI+MP++DG
Sbjct: 12 RLLVVDDNAQNIELLTALMEAEGYEVISAADGLEALTHVAAAPPDLILLDIMMPKLDGYA 71
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E + ++ +T A ++KPF +L + LL +K
Sbjct: 72 VCRRLKEEAATRLVPIVLLTALGAEEARIRGIEAGADDFITKPFSRTELKARIRSLLRLK 131
Query: 122 N 122
+
Sbjct: 132 S 132
>gi|239941771|ref|ZP_04693708.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239988231|ref|ZP_04708895.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
gi|291445216|ref|ZP_06584606.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291348163|gb|EFE75067.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 225
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|120556501|ref|YP_960852.1| two component transcriptional regulator [Marinobacter aquaeolei
VT8]
gi|120326350|gb|ABM20665.1| two component transcriptional regulator, winged helix family
[Marinobacter aquaeolei VT8]
Length = 230
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ + +L+ +D+ +R + AL A Y+ + + A+ + ++ L+L D ++P
Sbjct: 1 MSGKTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIIDKQPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+ELARR E D+ ++ +T ++KPF R+LV + +
Sbjct: 61 SGVELARRLKKEEATADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|323495121|ref|ZP_08100207.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
gi|323310622|gb|EGA63800.1| transcriptional regulator CpxR [Vibrio brasiliensis LMG 20546]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+EV NNG + + L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLELL-SNDIDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|289178766|gb|ADC86012.1| Two-component response regulator [Bifidobacterium animalis subsp.
lactis BB-12]
Length = 246
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ + + + L G+ +GA+A + L++ D+++P MDGI
Sbjct: 19 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A +SKPF +R+LV V LL
Sbjct: 79 EATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 135
>gi|270261003|ref|ZP_06189276.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270044487|gb|EFA17578.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L GY++ +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDGDIAELLQLHLRDEGYDISHAADGNQGMAMLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RRA + ++ I+ ++ L+KPF + +LV V L +
Sbjct: 65 EICRRARNMTRYTPIIIISARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123
>gi|228914576|ref|ZP_04078185.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228844895|gb|EEM89937.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG ++
Sbjct: 8 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 68 CFELRKYY-DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|253698881|ref|YP_003020070.1| transcriptional regulator [Geobacter sp. M21]
gi|251773731|gb|ACT16312.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M21]
Length = 224
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + YEV + +G E+PF L++ D ++P+ DG+
Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T +V + L+KPF +L+ V L+
Sbjct: 62 VLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118
>gi|42783708|ref|NP_980955.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42739637|gb|AAS43563.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVQKYLIKEGFQVTIASDGEEGVNTYLQGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|16079696|ref|NP_390520.1| two-component response regulator YrkQ [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310574|ref|ZP_03592421.1| hypothetical protein Bsubs1_14456 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314898|ref|ZP_03596703.1| hypothetical protein BsubsN3_14377 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319820|ref|ZP_03601114.1| hypothetical protein BsubsJ_14293 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324099|ref|ZP_03605393.1| hypothetical protein BsubsS_14427 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|1731135|sp|P54443|YRKP_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein
yrkP
gi|1303715|dbj|BAA12371.1| YrkP [Bacillus subtilis]
gi|2635088|emb|CAB14584.1| two-component response regulator [YrkQ] [Bacillus subtilis subsp.
subtilis str. 168]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD+D+ L ++L +AGYEV+ +G A V + L++ DI+MP +
Sbjct: 1 MAYRILVVEDDEDIGDLLEESLTRAGYEVLRAKDGKRALQLV-NDSLDLVILDIMMPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + + ++ ++F+T ++ + ++KPF +L V L
Sbjct: 60 GIETCQHIRK-SSNVPILFLTARSSTLDKTEGLLAGGDDYMTKPFSEEELHARVIAQLRR 118
>gi|325957425|ref|YP_004292837.1| response regulator [Lactobacillus acidophilus 30SC]
gi|325333990|gb|ADZ07898.1| response regulator [Lactobacillus acidophilus 30SC]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ LG GY+V+ +G A + ++E +L+L D ++P DGI
Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ ++ +T + + + ++KPF + +L + +L
Sbjct: 67 VLRRIRKQ-SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122
>gi|319793329|ref|YP_004154969.1| two component transcriptional regulator winged helix family
[Variovorax paradoxus EPS]
gi|315595792|gb|ADU36858.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus EPS]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GY + +G + ++ + L+ D+++P +DG+
Sbjct: 5 KRVLIVEDDAHIAELLRMHLRDEGYAIEHAADGHAGLRELERGNWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V L+
Sbjct: 65 EICRRARAMARYTPIIIISARSSEVHRILGLELGADDYLAKPFSVLELVARVKALMRR 122
>gi|315039000|ref|YP_004032568.1| response regulator [Lactobacillus amylovorus GRL 1112]
gi|312277133|gb|ADQ59773.1| response regulator [Lactobacillus amylovorus GRL 1112]
gi|327184133|gb|AEA32580.1| response regulator [Lactobacillus amylovorus GRL 1118]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ LG GY+V+ +G A + ++E +L+L D ++P DGI
Sbjct: 7 KILLVEDEEAVASFVKTELGFEGYQVIWAQDGKEALELFQKEDPTLILLDWMLPVYDGIT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ ++ +T + + + ++KPF + +L + +L
Sbjct: 67 VLRRIRKQ-SDVPIIMLTAKNSASDISSALDQGLDDYITKPFEIEELFARIRVILRR 122
>gi|297617001|ref|YP_003702160.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
gi|297144838|gb|ADI01595.1| two component transcriptional regulator, winged helix family
[Syntrophothermus lipocalidus DSM 12680]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ + + L K G++V +G +A + L++ DI++P++DG
Sbjct: 3 NARILVVDDEVHIVELVKFNLEKEGFQVRVAYDGITALTQAELVRPDLIILDIMLPQLDG 62
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ RR + ++ +T + KPF R++V V L
Sbjct: 63 LEVCRRLRSMQDFSSTPIIMLTAKGEEFDTVLGLEMGADDYIKKPFSPREMVARVKARLR 122
Query: 120 IK 121
K
Sbjct: 123 AK 124
>gi|293556317|ref|ZP_06674900.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
gi|291601517|gb|EFF31786.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium E1039]
Length = 160
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TD++MPEMD
Sbjct: 1 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATHIELIITDVMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D+ V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|288941366|ref|YP_003443606.1| two component transcriptional regulator PhoB, winged helix family
[Allochromatium vinosum DSM 180]
gi|288896738|gb|ADC62574.1| two component transcriptional regulator PhoB, winged helix family
[Allochromatium vinosum DSM 180]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ D+R + AL + + V+ + A + E L+L D ++P
Sbjct: 1 MT-TILVIDDEPDIREVMRFALESSDFRVMEAGHADEARKLLSNETPDLILLDWMLPGRS 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ELA++ + + ++ I+ ++KPF R++V V +L
Sbjct: 60 GLELAQQLKQNPKTKSIPIIMISARGEEEDRVKGLDTGADDYIAKPFSPREMVARVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|228951062|ref|ZP_04113180.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229068257|ref|ZP_04201560.1| Two-component response regulator [Bacillus cereus F65185]
gi|229077882|ref|ZP_04210493.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|229143295|ref|ZP_04271726.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|229148910|ref|ZP_04277155.1| Two-component response regulator [Bacillus cereus m1550]
gi|229177100|ref|ZP_04304489.1| Two-component response regulator [Bacillus cereus 172560W]
gi|229188777|ref|ZP_04315812.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228594678|gb|EEK52462.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228606281|gb|EEK63713.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228634450|gb|EEK91034.1| Two-component response regulator [Bacillus cereus m1550]
gi|228640102|gb|EEK96501.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228705400|gb|EEL57775.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228714718|gb|EEL66590.1| Two-component response regulator [Bacillus cereus F65185]
gi|228808579|gb|EEM55080.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|148976462|ref|ZP_01813168.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
gi|145964285|gb|EDK29541.1| DNA-binding response regulator GltR [Vibrionales bacterium SWAT-3]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N +IL+ +DD ++R L + L K+G++V S +G ++ + L+L D+++P D
Sbjct: 4 NTRILVVDDDQEIRELLEEYLTKSGFDVSSVGDGVELETHLQSQGYPDLILLDVMLPGDD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R + ++ ++ +T + ++KPF R L+ + LL
Sbjct: 64 GFTLCQRVR-RNSNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122
>gi|332520078|ref|ZP_08396542.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
gi|332044637|gb|EGI80831.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ D+ + L K GY+V + +NG K ++E L++ D++MPEMDGIE
Sbjct: 7 KILLVDDEPDILEIVGYNLSKEGYQVSTASNGVEGVKKAKKEKPHLIILDVMMPEMDGIE 66
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + F+T ++KP + L+++V LL
Sbjct: 67 ACEQIRKVPELKNTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKLLLSKVKALLRR 125
>gi|328883819|emb|CCA57058.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 247
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V S +GA+A RE ++ DI++P++DG+
Sbjct: 23 RVLVVDDEASLAELLSMALRYEGWQVRSAGDGAAALRSAREFRPDAVILDIMLPDVDGLS 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 83 LLGRIRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 139
>gi|294812933|ref|ZP_06771576.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294325532|gb|EFG07175.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 260
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 36 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 95
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 96 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRR 154
>gi|229121460|ref|ZP_04250687.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
gi|228661924|gb|EEL17537.1| Two-component response regulator vanR [Bacillus cereus 95/8201]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|282910995|ref|ZP_06318797.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282324690|gb|EFB55000.1| phosphate regulon transcriptional regulatory protein PhoB
[Staphylococcus aureus subsp. aureus WBG10049]
gi|312438183|gb|ADQ77254.1| response regulator [Staphylococcus aureus subsp. aureus TCH60]
Length = 219
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ ++ RFL L Y V + +G DK + L++ D+++P ++
Sbjct: 1 MTQ-ILIVEDEQNLVRFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|307153776|ref|YP_003889160.1| LuxR family two component transcriptional regulator [Cyanothece sp.
PCC 7822]
gi|306984004|gb|ADN15885.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7822]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+++ ILL +D+ +R + L ++V +N A+D +++ P L+++DI+MP
Sbjct: 1 MSKQASILLVDDEPGIRESVQAYLEYGDEFQVQVASNAHQAWDFLQKNPPDLVISDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
E+DG + ++ E + V+F+T + +SKPF +L V
Sbjct: 61 EVDGYQFLKKLRENQRYETIPVVFLTARGMTSDRIQGYNAGCDAYISKPFDPEELEAIVK 120
Query: 116 RLLTIK 121
LL +
Sbjct: 121 NLLERR 126
>gi|193212865|ref|YP_001998818.1| two component transcriptional regulator, winged helix family
[Chlorobaculum parvum NCIB 8327]
gi|193086342|gb|ACF11618.1| two component transcriptional regulator, winged helix family
[Chlorobaculum parvum NCIB 8327]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + FL + L + + V ++G + D + LLL D ++P + GIE
Sbjct: 2 RLLIIEDEPGIAGFLKEGLEEEYFAVDVASDGRTGLDLAMTNEYDLLLVDWMIPGISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + D+ ++F+T + + KPF +L+ + L +
Sbjct: 62 VCRRLRKEGNDVPIIFLTAKDTIEDVVFGLDAGANDYIRKPFEFEELLARIRVQLRRR 119
>gi|306819750|ref|ZP_07453409.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304552215|gb|EFM40147.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 240
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ ++ + + L +GY V + ++G A + E + L++ DI +P+MDG
Sbjct: 19 KLLVVEDEKELLDSIAEGLRLSGYAVDTASDGEEAQEMCYVENYDLIVLDINLPKMDGFT 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E D + V+ +T + L KPFH +L + LL K
Sbjct: 79 VLQKIREEDKLVNVIMLTARTQIKDRVKGLDLGANDYLIKPFHFDELEARIRSLLRRK 136
>gi|260433981|ref|ZP_05787952.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
ITI-1157]
gi|260417809|gb|EEX11068.1| DNA-binding response regulator [Silicibacter lacuscaerulensis
ITI-1157]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ EDD+D R F+ K G+ GY V + ++G + F ++ D ++P +D
Sbjct: 1 MSRRLLIVEDDEDTRDFIAKGFGEEGYVVETASDGREGLYHATDGGFDAVVLDRMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + V+ +T +AV L KPF ++L + LL
Sbjct: 61 GLAVIKSMRAAGVKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRR 120
>gi|228933205|ref|ZP_04096061.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228826366|gb|EEM72143.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|196033613|ref|ZP_03101025.1| DNA-binding response regulator [Bacillus cereus W]
gi|195994047|gb|EDX58003.1| DNA-binding response regulator [Bacillus cereus W]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|49477414|ref|YP_036047.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49328970|gb|AAT59616.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|32491287|ref|NP_871541.1| DNA-binding transcriptional regulator CpxR [Wigglesworthia
glossinidia endosymbiont of Glossina brevipalpis]
gi|25166494|dbj|BAC24684.1| cpxR [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+LL +DD ++ L + L K G+E+ NG A K+ + LLL DI+MP+ +
Sbjct: 1 MN-KLLLVDDDKELISLLKELLEKEGFEIQVAYNGEQALSKL-NDTIDLLLLDIIMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + L ++ +T + +SKPF+ R+LV + +L
Sbjct: 59 GIDTLKEIRKNKQHLPIIMLTARGSELDKIIGLELGADDYISKPFNKRELVARIKAILRR 118
>gi|332798939|ref|YP_004460438.1| winged helix family two component transcriptional regulator
[Tepidanaerobacter sp. Re1]
gi|332696674|gb|AEE91131.1| two component transcriptional regulator, winged helix family
[Tepidanaerobacter sp. Re1]
Length = 239
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ ++R + L GY+V +G A R + L++ D+++P++DG
Sbjct: 5 KKAILVVDDEKNIRELVRFNLESRGYKVKEAMDGKEALSIARTDEPLLIILDLMLPKIDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R + ++ +T ++KPF R++V V ++
Sbjct: 65 LEVCRILKGDPSTKKIPIIMLTALGDEIDKIVGLELGADDYITKPFSPREMVARVRAVIR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|325847791|ref|ZP_08170013.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480809|gb|EGC83862.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KILL ED+ + + + L K YEV +G + E L+L D+++P++
Sbjct: 1 MNKIKILLIEDEKGISKIMKSYLEKEDYEVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G +L + ++ V+ +T + + ++KPF ++L+ + +L
Sbjct: 61 SGEDLIKEIRNK-SNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|258515194|ref|YP_003191416.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778899|gb|ACV62793.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 236
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L +AGY+V++ +G A + R L++ D++MP +DG +
Sbjct: 4 ILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDGYSI 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++ + ++KPF R+LV VN L
Sbjct: 64 CRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLRR 121
>gi|228971998|ref|ZP_04132616.1| DNA-binding response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978608|ref|ZP_04138981.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
gi|228781104|gb|EEM29309.1| DNA-binding response regulator [Bacillus thuringiensis Bt407]
gi|228787712|gb|EEM35673.1| DNA-binding response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|311740982|ref|ZP_07714807.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311303784|gb|EFQ79862.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length = 235
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G+E + ++G +A +K ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTEVCKQLR-TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|126657203|ref|ZP_01728369.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
gi|126621474|gb|EAZ92185.1| two-component hybrid sensor and regulator [Cyanothece sp. CCY0110]
Length = 225
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+++ + + L + Y V ++G +A + + + L++ DI++P++DGI
Sbjct: 2 KILVVEDDENIIIPIEEYLDEQNYIVEIASDGQAAREFLDVFDYDLIVLDIMLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ ++ +T + L KPF L +L V LL
Sbjct: 62 LCQQLRANGCKTPILMLTARDTIKDRVKGLDAGADDYLIKPFDLEELSARVRALLRR 118
>gi|312793945|ref|YP_004026868.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312181085|gb|ADQ41255.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +D+ D+ + + L + GY V + NG S ++ + +++ DI++P++DG E+
Sbjct: 6 VYVVDDEKDILELVSEYLIQKGYAVKTFENGESFLEEFGKSEPDIVILDIMLPDIDGYEI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R + + D+ ++ ++ + +SKPF L +L + ++L N
Sbjct: 66 CKRIRK-NSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIKKILRRVN 122
>gi|298241797|ref|ZP_06965604.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554851|gb|EFH88715.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 222
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD + L + L G+EV + +G + ++ L+L DI MP +D
Sbjct: 1 MATRVLLVDDDQTILSLLKRGLAYEGFEVYTAPDGETGLAATKKYQPHLVLLDIAMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR L D+ ++ +T VA + + KPF +LV + +L
Sbjct: 61 GLELCRRLHVLG-DIAIIMLTARDDVADKVHALGLGADDYVPKPFSFDELVARMRAVLRR 119
>gi|229096500|ref|ZP_04227471.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
gi|228686706|gb|EEL40613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG +
Sbjct: 7 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGIDALRKMDEVKVDMVILDIMMPNMDGFD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 67 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|229182111|ref|ZP_04309403.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
gi|228601362|gb|EEK58891.1| hypothetical protein bcere0005_54300 [Bacillus cereus 172560W]
Length = 281
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 51 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 110
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF +L+ V L
Sbjct: 111 GLTICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 169
>gi|182437360|ref|YP_001825079.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326777970|ref|ZP_08237235.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|178465876|dbj|BAG20396.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326658303|gb|EGE43149.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 248
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA A R+ ++ D+++P+MDG+
Sbjct: 22 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRAARDFRPDAVVLDVMLPDMDGLS 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T AV ++KPF L ++V + L+
Sbjct: 82 VLGRLRREYDDVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 138
>gi|37521380|ref|NP_924757.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35212377|dbj|BAC89752.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ L L + G+ V + +G A+D + + F L++ D ++P G++
Sbjct: 2 HLLLVEDEAELADPLAAMLKREGHVVETSYDGEHAWDLLSSQSFDLVILDWMLPGHSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+ +T + L KPF LR+L+ V LL
Sbjct: 62 LCRRLRAGGRSVPVLMLTARDTIDSKLAGFEAGADDYLVKPFELRELLARVRALLRR 118
>gi|323705241|ref|ZP_08116816.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323535143|gb|EGB24919.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL +D++ + + L K GY V++ NGA+A + + L++ D+++P M G E
Sbjct: 2 KILAIDDEEKILDVIKAYLEKEGYTVLTETNGANALNTFKTVNPDLVILDLMLPGMSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI-KN 122
+ R+ L + ++ +T + L+KPF R+L V +L KN
Sbjct: 62 ICRKIRAL-SKVPILMLTAKVSEDDKVYGFTIGADDYLTKPFSPRELTMRVKAILRRTKN 120
>gi|323701988|ref|ZP_08113657.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
gi|323533074|gb|EGB22944.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
Length = 448
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 63/118 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D++ M L +AL GY+V++ G +E S+++ D+ MP++D
Sbjct: 1 MIPRVLVIDDEERMCWALERALSHEGYQVITTTRGVQGVSLAQEMDPSIVVLDLKMPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R+ + +P++ V+ IT + ++ ++KPF L +L + + L
Sbjct: 61 GIEVLRKIKDFNPNIPVIMITAHGTIETAIEAMKIGATDYITKPFKLEELKVVIKQAL 118
>gi|319936818|ref|ZP_08011230.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
sp. 29_1]
gi|319808086|gb|EFW04658.1| KDP operon transcriptional regulatory protein KdpE [Coprobacillus
sp. 29_1]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ IL+ EDD +R + L Y+ + +NG +A + ++L D+ +P+
Sbjct: 1 MNKTSTILVVEDDSAVRNLISTTLQAHNYKYLLASNGETAILEASSHNPDIILLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DGIE+ ++ ++ ++ I+ + + ++ L+KPF + +L+ + L
Sbjct: 61 IDGIEIIKKVRS-WSNMPIIVISARSEDSDKIEALDVGADDYLTKPFSVEELLARLRVTL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|312277717|gb|ADQ62374.1| TCS response regulator CovR-like protein [Streptococcus
thermophilus ND03]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLELALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + D +M +T ++ + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|307154447|ref|YP_003889831.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306984675|gb|ADN16556.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 224
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L + L Y V +G +D ++ + L++ D+++P++ G
Sbjct: 2 RILLVEDDERIANALAETLKDRQYLVDLAFDGEKGWDFIQSFSYDLIILDVMLPKLSGTA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + V+ +T + KPF L +L + LL N
Sbjct: 62 LCQRLRDTGYMTPVLMLTARDTSRDKVKGLDAGADDYVVKPFDLPELAARIRALLRRSN 120
>gi|301057951|ref|ZP_07199008.1| putative fused DNA-binding response regulator in two-component
regulatory system with ZraS: response regulator/sigma54
interaction protein [delta proteobacterium NaphS2]
gi|300447918|gb|EFK11626.1| putative fused DNA-binding response regulator in two-component
regulatory system with ZraS: response regulator/sigma54
interaction protein [delta proteobacterium NaphS2]
Length = 453
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ + + L L G+EV + +G A KV E L+L DI M MD
Sbjct: 1 MSKTILVVDDETSILQSLEGILSDEGFEVATAESGLEALKKVEETMPDLVLLDIWMSGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE + +L P L+V+ ++G + + + KP L L+ +N L
Sbjct: 61 GIETLEKIKDLYPRLQVIMMSGHGNIETAVKATKVGAYDYIEKPLSLEKLLLSINNAL 118
>gi|291439275|ref|ZP_06578665.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291342170|gb|EFE69126.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|228914595|ref|ZP_04078204.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228844914|gb|EEM89956.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P MD
Sbjct: 3 MMPTILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEGALQILCEHTVDVALLDVMLPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|229014759|ref|ZP_04171862.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
gi|228746525|gb|EEL96425.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
Length = 225
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ +R + L GYEV++ +G A ++ E+ +L+ D+++P+ D
Sbjct: 1 MMMKILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R E D D+ V+ +T + + ++KPF+ +L+ V ++
Sbjct: 60 GYELLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN-MSR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|205375079|ref|ZP_03227870.1| two component transcriptional regulator [Bacillus coahuilensis
m4-4]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+D++ + + L GY V++ +G A V E L++ DI+MP DG
Sbjct: 3 TILLADDEESILDVCRRYLELEGYRVITATDGQDALKLVNEYSPHLIVLDIMMPIQDGWH 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A + + D ++ +T + L KPF ++LV VN +L
Sbjct: 63 VAEQVR-VSRDTPIIMLTALGQERDRIYGLSIGADDYLVKPFSPKELVLRVNNILRR 118
>gi|126736258|ref|ZP_01752000.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. CCS2]
gi|126714079|gb|EBA10948.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. CCS2]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V NG V E +++ D +MP + GIE
Sbjct: 6 HVLIVEDEAAQREVLAYNLEAEGFRVTRAENGDEGLLCVEENAPDVIVLDWMMPNLSGIE 65
Query: 64 LARR--ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 66 VCRRLKIKPETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 124
>gi|75910544|ref|YP_324840.1| two component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75704269|gb|ABA23945.1| two component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 236
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILL +D+ ++ L + L + GY V + G S + + LL+ D ++P G
Sbjct: 6 SMRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + V+F+T + L KPF LR+L+ V LL
Sbjct: 66 LEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125
Query: 122 N 122
+
Sbjct: 126 S 126
>gi|307293762|ref|ZP_07573606.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
gi|306879913|gb|EFN11130.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
Length = 239
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+++ +LL +D+ +R L + LG+ G+ V + N A A ++ L++ DI+MP
Sbjct: 1 MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARMRLNANAIDLVILDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R E ++ V+ +T + + KPF R+LV + +
Sbjct: 61 EDGLSLCRHIRE-TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIF 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|326202143|ref|ZP_08192013.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987938|gb|EGD48764.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ ++ + L Y + + A + E + L + D++MP MD
Sbjct: 1 MSTNILVVDDEKEIADLVELYLRNENYNIYKFYSPIEALKSIDEIKYDLAILDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ E + V+ +T ++KPF ++V V L
Sbjct: 61 GFKLCQKIREKY-NFPVIMLTAKVEEMDKITGLTLGADDYITKPFSPLEMVARVKAQLRR 119
>gi|238927716|ref|ZP_04659476.1| response regulator [Selenomonas flueggei ATCC 43531]
gi|238884432|gb|EEQ48070.1| response regulator [Selenomonas flueggei ATCC 43531]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K +L+ ED+ + RFL L G+ NG AY+++ +E F ++L D+++P
Sbjct: 1 MDEKTHVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ RR + ++ ++ +T AV + ++KPF + +L+ V L
Sbjct: 61 MDGIEICRRVRTV-SNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARVRNAL 119
Query: 119 TIKN 122
++
Sbjct: 120 RRRD 123
>gi|229095219|ref|ZP_04226211.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229101326|ref|ZP_04232070.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|229114167|ref|ZP_04243588.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228669187|gb|EEL24608.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228682031|gb|EEL36164.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228688078|gb|EEL41964.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLAMQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDERIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|218708873|ref|YP_002416494.1| DNA-binding response regulator [Vibrio splendidus LGP32]
gi|218321892|emb|CAV17879.1| DNA-binding response regulator [Vibrio splendidus LGP32]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N +IL+ +DD ++ L + L K+G++V S +G + ++ + L+L D+++P D
Sbjct: 4 NTRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R + ++ ++ +T + ++KPF R L+ + LL
Sbjct: 64 GFTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122
>gi|254447699|ref|ZP_05061165.1| two component transcriptional regulator, winged helix family [gamma
proteobacterium HTCC5015]
gi|198263042|gb|EDY87321.1| two component transcriptional regulator, winged helix family [gamma
proteobacterium HTCC5015]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + L+ AL K G+ V G A + + ++ D+ +P+ +
Sbjct: 1 MKPQILIVEDEPAIADTLLYALKKEGFNVHWAQLGGEAEEWLSCHSADGIVLDVGLPDTN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R + + + ++F+T + KPF R+LV + +L
Sbjct: 61 GFELCKRIRQNNTQVPIIFLTARKEEVDRIVGLEIGGDDYVVKPFSPRELVARIKAILRR 120
>gi|300721189|ref|YP_003710457.1| response regulator in two-component regulatory system with CpxA
regulates genes involved in folding/degrading
periplasmic proteins OmpR family protein [Xenorhabdus
nematophila ATCC 19061]
gi|139522417|gb|ABO77646.1| CpxR [Xenorhabdus nematophila]
gi|297627674|emb|CBJ88197.1| response regulator in two-component regulatory system with CpxA,
regulates genes involved in folding/degrading
periplasmic proteins (OmpR family) [Xenorhabdus
nematophila ATCC 19061]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIAHDGEQALQYIDS-SIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQ-YHQTPVIMLTARGSDLDRVLGLELGADDYLPKPFNDRELVARIRAILRRSN 119
>gi|91786449|ref|YP_547401.1| two component transcriptional regulator [Polaromonas sp. JS666]
gi|91695674|gb|ABE42503.1| two component transcriptional regulator, winged helix family
[Polaromonas sp. JS666]
Length = 241
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + L L GY V +G + ++ + L+ D+++P +DG+
Sbjct: 5 KRVLIVEDDTHIAELLRMHLQDEGYAVQHAADGNAGLRELERGSWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVRALLRR 122
>gi|323701248|ref|ZP_08112923.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323533850|gb|EGB23714.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+A+DD + + + L + GY VV+ +G A L++ DI+MP++D
Sbjct: 1 MNGTILIADDDHRIVKIVTHCLEQEGYRVVAAQDGEEAVRMAGALKPDLVILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E ++ D+ ++ ++ + +KPF +L V +L
Sbjct: 61 GLEACQKIKGA-ADVPIVILSAKDDLVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 119
>gi|298291963|ref|YP_003693902.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296928474|gb|ADH89283.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 239
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I + +D D+R + K L K GY N A+ + L++ DI+MP DG+
Sbjct: 6 HIAIVDDHRDIRDLVGKYLQKHGYRTSLAENAAAFRRLLDRNAIDLVVLDIMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ +T L+KPF+ R+L+ + +L
Sbjct: 66 LCRYLRE-SSTVPVIMLTAMTEETDRIVGLELGADDYLAKPFNPRELLARIKAVLRR 121
>gi|255263715|ref|ZP_05343057.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Thalassiobium sp. R2A62]
gi|255106050|gb|EET48724.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Thalassiobium sp. R2A62]
Length = 149
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+A+DD +R L AL +A ++VV +GA+A D V E L++ DI MPEMD
Sbjct: 1 MS-RILIADDDATIRDVLRIALEQAHHDVVEVADGAAALDAVSEHAPDLIVLDIGMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + V+F+T + ++KPF R++V + +L
Sbjct: 60 GLQVCQELRRTHA-TPVLFLTARSDEIDRIVGLELGADDYVTKPFSPREVVARIKAILKR 118
>gi|256396664|ref|YP_003118228.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256362890|gb|ACU76387.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 273
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L G+ +G +A +E L++ D+++P DG+E+
Sbjct: 4 ILVVEDEPTLAEAIAARLRAEGFATHLAGDGPAAVRTAQEHLPDLIVLDVMLPGFDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ +T + + L+KPF +R+L+ V+ LL
Sbjct: 64 CRRIQAERA-VPVLMVTARDDESDLIEGLRTGADDYLTKPFSMRELIARVHALLRR 118
>gi|226324464|ref|ZP_03799982.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
gi|225206912|gb|EEG89266.1| hypothetical protein COPCOM_02245 [Coprococcus comes ATCC 27758]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+L+ +D+ + + L +L + EV +G A + V+ + + ++L D+++P+ D
Sbjct: 1 MGRKVLVVDDEKLIVKGLRFSLEQDDMEVDCAYDGEEALEMVKRKEYDMILLDVMLPKYD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + D+ V+ +T ++KPF++ ++ + ++
Sbjct: 61 GFEVCRQIRD-FSDVPVIMLTAKGEDMDKILGLEYGADDYITKPFNILEVKARMKAIMRR 119
>gi|224541807|ref|ZP_03682346.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
15897]
gi|224525275|gb|EEF94380.1| hypothetical protein CATMIT_00979 [Catenibacterium mitsuokai DSM
15897]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KI++ +DD D+R + L GYEV+ +NG A + V ++ L++ D++MPEM+
Sbjct: 1 MNEKIMVVDDDKDIREVIQVLLSSEGYEVIEASNGKEALELVDDDTD-LIILDVMMPEMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + E ++F+T + + L+KPF +L V LL
Sbjct: 60 GYQACVLLREKTK-APILFLTAKGQDSDKTLGFSSGGDDYLTKPFSYNELNGRVKALLRR 118
Query: 121 KN 122
+
Sbjct: 119 YH 120
>gi|188589302|ref|YP_001921842.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
gi|251780126|ref|ZP_04823046.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188499583|gb|ACD52719.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
gi|243084441|gb|EES50331.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD+++R L L ++ + N A + E+ L+L DI+MP++D
Sbjct: 1 MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE R + D ++ ++ I+ + ++KPF+ +L+ V L
Sbjct: 61 GIEACMRIRK-DKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119
>gi|187933165|ref|YP_001886869.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187721318|gb|ACD22539.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD+++R L L ++ + N A + E+ L+L DI+MP++D
Sbjct: 1 MKGYILIVDDDENIRNLLSIYLENENFKTIKAENAKEAIKIIDEKEIELVLLDIMMPQID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE R + D ++ ++ I+ + ++KPF+ +L+ V L
Sbjct: 61 GIEACMRIRK-DKNMPIIMISAKSEDMDKIHGLTAGADDYITKPFNPLELIARVKSQLRR 119
>gi|167758624|ref|ZP_02430751.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
gi|167663820|gb|EDS07950.1| hypothetical protein CLOSCI_00964 [Clostridium scindens ATCC 35704]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G++V N+G + K E F + + D+++P +D
Sbjct: 1 MS-KILIVEDEEAIADLEKDYLELSGFKVEVANDGETGLKKALGEEFDMFILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICRQIRDK-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|47569367|ref|ZP_00240050.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
gi|47553955|gb|EAL12323.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|291459772|ref|ZP_06599162.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291417562|gb|EFE91281.1| regulatory protein VanR [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V N A +++E L+L D++MP M+G+EL
Sbjct: 6 VLVVDDEKEIAELVEIYLVSDGYKVFKAYNADEALLIMKQEEIHLVLLDVMMPGMNGLEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E ++ ++ ++ +A ++KPF+ +L V L
Sbjct: 66 CRKIRE-SSNIPIIMLSAKSADLDKIVGLTGGADDYVTKPFNPLELTARVKSQLRR 120
>gi|255528289|ref|ZP_05395103.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255508024|gb|EET84450.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 224
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ ++ L+ L Y V + NGA A + + + +++ DI+MP+M+G+E
Sbjct: 2 RILLAEDEKELSNALVAILKHNNYSVDAVYNGADALEYGLSQNYDVIILDIMMPKMNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T A + LSKPF + +L+ V + K+
Sbjct: 62 TLENLRKKGIHTPILMLTAKAEIEDRIVGLDAGADDYLSKPFAMGELLARVRAMTRRKS 120
>gi|256420293|ref|YP_003120946.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256035201|gb|ACU58745.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 235
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + F+ + L +AGY+V +G S E F L++ D+++P M+GI
Sbjct: 2 KLLLIEDEPSVVSFIRRYLAEAGYDVSVALDGQSGLQMATENNFQLIILDVMLPGMNGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T + L KPF +L+ + LL N
Sbjct: 62 VCKALRQQQLTTPILMLTALGSTENVVAGLDSGADDYLVKPFKQAELLARIRSLLRRNN 120
>gi|159898783|ref|YP_001545030.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891822|gb|ABX04902.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+D +R F+ + L G+EV+ NG A E L++ D++MP + G E
Sbjct: 7 RVLLAEDEDVLRDFIRRNLQVRGFEVLEATNGLEALALWHTEQPQLIILDLMMPRLTGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E + ++ +T A + L KPF + +L+ + +L
Sbjct: 67 VCQRIREQSI-VPIIVLTALDAERDKVMAFDLGADDYLCKPFGVDELLARIRAVLRR 122
>gi|331001884|ref|ZP_08325405.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412207|gb|EGG91601.1| hypothetical protein HMPREF0491_00267 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 231
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K L+ +D+ + + + +L + GYEV + +G A +E+ + ++L D+++PEMD
Sbjct: 1 MN-KALVVDDEKLIVKGIKFSLEQDGYEVDTAYDGNEALKMAKEKEYDIVLLDVMLPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 60 GMEVCQAIRE-FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRR 118
>gi|325287848|ref|YP_004263638.1| winged helix family two component transcriptional regulator
[Cellulophaga lytica DSM 7489]
gi|324323302|gb|ADY30767.1| two component transcriptional regulator, winged helix family
[Cellulophaga lytica DSM 7489]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ EDD ++ + L L Y +G + + E + L+L D+ +P MD
Sbjct: 1 MKQ-ILIIEDDPEIIQLLEIHLTDMVYTTTKAMDGETGLNLALENDYDLILLDLTLPIMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + + V+ +T + L+KPF +R+L+ + +L
Sbjct: 60 GIEVCKKLR-IKKNTPVIMLTAKSEEIDRVLGLEIGADDYLTKPFSIRELLARIKAVLRR 118
Query: 121 KN 122
+
Sbjct: 119 SD 120
>gi|295096445|emb|CBK85535.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 241
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD D+ L L GY + +G +A ++ +P+ ++ D+++P +D
Sbjct: 7 MKQ-ILLVEDDHDIAALLRLNLEDEGYAITHEPDGGNALQRLETQPWDAVILDLMLPNVD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L ++ I+ ++ L+KPF +++L+ + L
Sbjct: 66 GLEICRRIRQMTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 125
Query: 121 K 121
+
Sbjct: 126 Q 126
>gi|206576950|ref|YP_002240552.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
gi|206566008|gb|ACI07784.1| transcriptional regulatory protein CreB [Klebsiella pneumoniae 342]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I L ED+ + L+ L + G++V G A + + + + D+ +P++ G E
Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P L V+F+T + ++KPF R++ V +L
Sbjct: 65 LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121
>gi|217962746|ref|YP_002341322.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229141995|ref|ZP_04270520.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
gi|217065523|gb|ACJ79773.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228641284|gb|EEK97590.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R E D D+ V+ +T + + ++KPF+ +L+ V + N
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARRVN 119
>gi|67906524|gb|AAY82630.1| predicted response regulator [uncultured bacterium MedeBAC49C08]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +LL ED+ D+ + + L GY V S NG A + E+ L+L D+++P+M
Sbjct: 1 MKKYVLLVEDEPDLNQTVAFNLDSEGYSVESAFNGKEALKLIEEKTPDLILLDLMLPDMS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + + +M +T + KPF +R+ + V +L
Sbjct: 61 GLEICRILRSSKKTKNTPIMMVTAKGEEIDRIVGFELGADDYIVKPFSIREFMLRVAAML 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|78059924|ref|YP_366499.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77964474|gb|ABB05855.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 277
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 43 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 102
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 103 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 160
>gi|21673488|ref|NP_661553.1| DNA-binding response regulator [Chlorobium tepidum TLS]
gi|21646594|gb|AAM71895.1| DNA-binding response regulator [Chlorobium tepidum TLS]
Length = 236
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ EDD ++ L L KAGY + +G A D+++ +L+L DI++P +
Sbjct: 1 MAETSILIVEDDRNLAGLLKYNLEKAGYGCIHAASGEEALDELQRHAVNLVLLDIMLPGI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + DL ++ +T + KPF R+L + +
Sbjct: 61 DGFEVCRRIRQNVQWSDLPIVMLTAKGEEIDKVFGFELGIDDYVVKPFSPRELNLRIRAI 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|293400081|ref|ZP_06644227.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306481|gb|EFE47724.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ ++R + L GY V +NGA A K + L++ DI+MP MD
Sbjct: 1 MAYNVLIVDDNKEIREVVNVLLSNEGYIVNEADNGAEAITKCEAQ--DLIILDIMMPGMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR EL ++ ++F+T D L KPF +L++ VN L+
Sbjct: 59 GFKTCRRIRELT-NVPILFLTSKTLDQDKEDGFNSGGDDYLIKPFSYSELLSRVNALIRR 117
>gi|134102532|ref|YP_001108193.1| two-component system, response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133915155|emb|CAM05268.1| two-component system, response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 247
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL +G+EV GA A E +++ D+++P+ DG
Sbjct: 16 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR E + V+F+T AV ++KPF L ++V + +L
Sbjct: 76 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 132
>gi|254250783|ref|ZP_04944102.1| two component transcriptional regulator [Burkholderia cenocepacia
PC184]
gi|124879917|gb|EAY67273.1| two component transcriptional regulator [Burkholderia cenocepacia
PC184]
Length = 282
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 48 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 107
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 108 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 165
>gi|262393360|ref|YP_003285214.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
Ex25]
gi|262336954|gb|ACY50749.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
Ex25]
Length = 1111
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY + + ++G V +E LLL DI+MP M G ++
Sbjct: 709 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 768
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 769 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 823
>gi|304413239|ref|ZP_07394712.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Candidatus Regiella
insecticola LSR1]
gi|304284082|gb|EFL92475.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Candidatus Regiella
insecticola LSR1]
Length = 239
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F LL+ D+++P DG
Sbjct: 4 NHKILVVDDDVRLRALLDRYLTEQGFQVRSVANAEQMDRLLARESFHLLVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + + ++ +T + +SKPF+ R+L+ + +L +
Sbjct: 64 LSICRRLHNQNNPIPIIIVTAKSEDVDRVVGLEIGADDYMSKPFNPRELLARIRAVLRRQ 123
>gi|294629736|ref|ZP_06708296.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
gi|292833069|gb|EFF91418.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 10 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 69 GLEVARRLRADGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 128
>gi|260177202|gb|ACX33925.1| putative two-component regulatory system response regulator
[uncultured prokaryote AT5]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L GY V + G A ++E L++ D ++P +
Sbjct: 2 MKANILIVEDEEALVLLLRYNLEAEGYGVETVARGDEADLLLKERSPDLVILDWMLPGLS 61
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L V LL
Sbjct: 62 GIELCRRLRARAETKRLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELSARVRALL 121
Query: 119 TI 120
Sbjct: 122 RR 123
>gi|228933286|ref|ZP_04096142.1| DNA-binding response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228826447|gb|EEM72224.1| DNA-binding response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 74 CLELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|254391635|ref|ZP_05006833.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326441458|ref|ZP_08216192.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|197705320|gb|EDY51132.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 225
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGLAGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRSEGHTVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|218236009|ref|YP_002366587.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218163966|gb|ACK63958.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDKDIIQFINVNLKQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|332652719|ref|ZP_08418464.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
gi|332517865|gb|EGJ47468.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
Length = 236
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+AEDD + + L+ L + V +NG A + + + L+ DI+MP +DG
Sbjct: 12 NMKLLVAEDDPKLLKSLVHILEHNRFSVDGVSNGEDALEYGQTGEYDGLILDIMMPGLDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ + +F+T ++ + L KPF +L+ + +L K
Sbjct: 72 LQVLQTLRRNGIKTPALFLTARTEISQRVEGLDAGADDYLPKPFSTAELLARIRAMLRRK 131
Query: 122 N 122
+
Sbjct: 132 D 132
>gi|331005887|ref|ZP_08329239.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC1989]
gi|330420331|gb|EGG94645.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC1989]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ +R L AL A Y + + SA+ + ++ SL+L D ++P G
Sbjct: 4 NKTILIVDDESAIRDMLRVALEMADYHCLEAADTQSAHALIIDQKPSLILLDWMLPGTSG 63
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I+LARR E D+ ++ +T ++KPF R+LV + +L
Sbjct: 64 IDLARRLKKDEFTADIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLR 123
Query: 120 I 120
Sbjct: 124 R 124
>gi|311696245|gb|ADP99118.1| two component transcriptional regulator, winged helix family
[marine bacterium HP15]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +D+ +R + AL A Y+ + + A+ + ++ L+L D ++P
Sbjct: 1 MTGKTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKHPDLVLLDWMLPGT 60
Query: 60 DGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+ELARR + + D+ ++ +T ++KPF R+LV + +
Sbjct: 61 SGVELARRLKKEESTADIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|317131583|ref|YP_004090897.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315469562|gb|ADU26166.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 249
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +IL+A+DD ++ + AL G+E V NG +++ E+P L + DI+MPEM
Sbjct: 23 MQNRILIADDDREIVEVMDDALRDEGFETVRAYNGKQVLEQLSGEKPIDLFILDIMMPEM 82
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E R E D V+ ++ +SKPF + +L+ V L
Sbjct: 83 DGLETLRHIRERT-DAPVLILSARGREIDKVIGLRVGADDYVSKPFSVDELMARVGAHLR 141
Query: 120 IKN 122
+N
Sbjct: 142 REN 144
>gi|270160105|ref|ZP_06188761.1| transcriptional regulatory protein CpxR [Legionella longbeachae
D-4968]
gi|289165117|ref|YP_003455255.1| transcriptional regulatory protein CpxR [Legionella longbeachae
NSW150]
gi|269988444|gb|EEZ94699.1| transcriptional regulatory protein CpxR [Legionella longbeachae
D-4968]
gi|288858290|emb|CBJ12158.1| transcriptional regulatory protein CpxR [Legionella longbeachae
NSW150]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ L + L GY V ++G + K +PF ++ D+++P+++
Sbjct: 1 MNGNILIIDDDTELTDLLSQYLEPEGYHAVCVHDGENGVKKALNQPFDAVILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKSIREHL-ETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|290955975|ref|YP_003487157.1| two component system transcriptional regulator PhoP [Streptomyces
scabiei 87.22]
gi|260645501|emb|CBG68589.1| putative POSSIBLE TWO COMPONENT SYSTEM RESPONSE TRANSCRIPTIONAL
POSITIVE REGULATOR PHOP [Streptomyces scabiei 87.22]
Length = 247
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ ED+ +R L L GYEV S + G SA +V L+L D+++P++DG
Sbjct: 12 HRLLVVEDEPSIRTLLEATLRLTGYEVSSTDTGQSALVEVERLRPHLVLLDVMLPDLDGF 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + ++F+T + +SKPF + +++ + +L
Sbjct: 72 EVTRRLRAAGDECPILFLTARTGTDDRIQGLSVGGDDYVSKPFSIEEVLLRIEAILRR 129
>gi|253578241|ref|ZP_04855513.1| regulatory protein VanR [Ruminococcus sp. 5_1_39B_FAA]
gi|251850559|gb|EES78517.1| regulatory protein VanR [Ruminococcus sp. 5_1_39BFAA]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ EDD +R + L GY V +G KV + L++ DI+MP +
Sbjct: 3 MDNHILVVEDDAAIREGVRILLEGEGYIVQEAEDGYQCLKKV-SDDIDLVILDIMMPGIS 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ ++ + V+F+T + + L KPF +L+ V LL
Sbjct: 62 GIKTCEEIRKI-SHVPVLFLTAKSQESDKLLGLMAGGDDYLVKPFSYAELLARVKALLRR 120
Query: 121 KN 122
+
Sbjct: 121 YH 122
>gi|254477021|ref|ZP_05090407.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
sp. R11]
gi|214031264|gb|EEB72099.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
sp. R11]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ NG A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAENGEEALLIVEEDTPDIIVLDWMMPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRRLKSRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125
>gi|298385028|ref|ZP_06994587.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298262172|gb|EFI05037.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1450
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+++++ FL L Y V++ NG + L+++D++MP MDG+E
Sbjct: 1192 TILVVEDNEELKAFLKNILS-ENYTVITAPNGKEGLQHAVDNIPDLIISDVMMPVMDGLE 1250
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E + + ++ ++ A++ ++KPF L + LL +
Sbjct: 1251 MIRKIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQR 1310
>gi|316936256|ref|YP_004111238.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris DX-1]
gi|315603970|gb|ADU46505.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris DX-1]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GYEV + G A +++E L++ D ++P +
Sbjct: 1 MAARILVVEDEEALTTLLRYNLESEGYEVEAVARGDDADTRMKERIPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229042428|ref|ZP_04190174.1| Two-component response regulator [Bacillus cereus AH676]
gi|229108177|ref|ZP_04237799.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229126003|ref|ZP_04255026.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228657428|gb|EEL13243.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228675193|gb|EEL30415.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228726882|gb|EEL78093.1| Two-component response regulator [Bacillus cereus AH676]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|153952685|ref|YP_001393450.1| VanR [Clostridium kluyveri DSM 555]
gi|146345566|gb|EDK32102.1| VanR [Clostridium kluyveri DSM 555]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + + L G+ + NG A+ V E L + D+++P++D
Sbjct: 1 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R E + V+ +T ++KPF +LV V L
Sbjct: 61 GFTLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 119
>gi|119476332|ref|ZP_01616683.1| two-component system regulatory protein [marine gamma
proteobacterium HTCC2143]
gi|119450196|gb|EAW31431.1| two-component system regulatory protein [marine gamma
proteobacterium HTCC2143]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+D +R+ L A+ + Y V +G E P+ L + D+ +PE+ GI
Sbjct: 2 RILIVEDEDHIRQQLRTAMRRQNYAVDVAKDGREGLYFATEYPYDLAIIDLGLPEISGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E D ++ +T + + + KPF + ++ +N LL
Sbjct: 62 LIKELRENDKQFPILILTARSDWQDKVEGLEAGADDYVVKPFQMEEVNARINALLRR 118
>gi|33239608|ref|NP_874550.1| two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237133|gb|AAP99202.1| Two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 247
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ +RR L L GY+VV+ NG A + L++ D++MP++DG +
Sbjct: 11 ILVADDEASIRRILETRLSMIGYQVVTACNGNEALQQFHNCEPDLVVLDVMMPKLDGYGV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T VA + KPF ++L + +L
Sbjct: 71 IQELRKE-SDVPIVMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRCVLRR 125
>gi|86146088|ref|ZP_01064414.1| Response regulator [Vibrio sp. MED222]
gi|85836035|gb|EAQ54167.1| Response regulator [Vibrio sp. MED222]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N +IL+ +DD ++ L + L K+G++V S +G + ++ + L+L D+++P D
Sbjct: 4 NTRILVVDDDQEICELLEEYLTKSGFDVSSVGDGVELENHLQNQGYPDLILLDVMLPGDD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R + ++ ++ +T + ++KPF R L+ + LL
Sbjct: 64 GFTLCQRVRKQ-SNVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRR 122
>gi|329927919|ref|ZP_08281947.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
sp. HGF5]
gi|328938138|gb|EGG34534.1| putative transcriptional regulatory protein afsQ1 [Paenibacillus
sp. HGF5]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL ED+ M + L G+ V++ NG A + R E +L++ D ++P
Sbjct: 1 MEMTLLLVEDEVAMLETMKLYLEGEGFRVLAVTNGQDALECARREQPALVVLDWMLPGKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + ++ +T + ++KPF LR+L + + +L
Sbjct: 61 GIEVCKELRQ-SSACGIIMVTAKSEETDKIIGLELGADDYITKPFSLRELTSRIRSVLRR 119
>gi|257439442|ref|ZP_05615197.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
gi|257198101|gb|EEU96385.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
Length = 247
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 18 MN-KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + L ++ T L+KPF + +L+ + L+
Sbjct: 77 GFETLEEIRKEYS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135
>gi|228937808|ref|ZP_04100438.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970689|ref|ZP_04131331.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977266|ref|ZP_04137662.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228782405|gb|EEM30587.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228788991|gb|EEM36928.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228821843|gb|EEM67841.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|226310855|ref|YP_002770749.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093803|dbj|BAH42245.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL ED+ + R + L KAGYEV S N+G A + E+ L+L D+++PE +G
Sbjct: 2 KSILLVEDELVIARVIKAYLQKAGYEVWSANDGLEAMELFDEKKPDLVLLDVMLPERNGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E V+ +T ++KPF ++V VN +L
Sbjct: 62 EILQYIREK-SSCPVIIMTALGQTDQKLKGLNQGADDYITKPFVADEVVARVNAVLRR 118
>gi|164688214|ref|ZP_02212242.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
16795]
gi|164602627|gb|EDQ96092.1| hypothetical protein CLOBAR_01859 [Clostridium bartlettii DSM
16795]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+A+D+ ++R L L GY+VV +G A D + E LL+ DI+MP+++G
Sbjct: 8 NNKILVADDEKEIRDLLEIYLLNEGYKVVKAKDGQEALDIIENEDVDLLVLDIMMPKVNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ ++ + + ++ ++ ++ + ++KPF+ + V LL
Sbjct: 68 IEVCKKVRQ-NKNMPILMLSAKSEDMDKIQGLMTGADDYMTKPFNPLEFTVRVKALLRR 125
>gi|327403396|ref|YP_004344234.1| winged helix family two component transcriptional regulator
[Fluviicola taffensis DSM 16823]
gi|327318904|gb|AEA43396.1| two component transcriptional regulator, winged helix family
[Fluviicola taffensis DSM 16823]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 61/116 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAEDDD++ + L L GY+V NG AY+K + F + D++MPEMDG L
Sbjct: 7 ILLAEDDDNLGQLLQTFLKAKGYQVELARNGKHAYEKYTDGHFDFCIFDVMMPEMDGFTL 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ +DP + ++F+T A + ++KPF + +L+ + +L
Sbjct: 67 AKEVRLIDPKVPILFLTAKAMKEDKLEGFESGADDYMTKPFTMEELLARIEAILRR 122
>gi|317472204|ref|ZP_07931533.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316900293|gb|EFV22278.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D+ + L L GY V N A DK+ ++L DI M M+G
Sbjct: 4 NYKILIVDDEQSILDMLKLQLEFEGYTVFIACNAKEALDKL-SYSPDIILLDINMAGMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L + ++F+T + + ++KPF + +L+ ++ L +
Sbjct: 63 LDLCVSIRD-FISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRRE 121
>gi|302336530|ref|YP_003801737.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
gi|301320370|gb|ADK68857.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L GY V +NG A + + EP+ L+L D+ +P +DG+E
Sbjct: 2 KILVVEDERELLESIGEGLRIDGYYVDLLDNGTEALEMAQIEPYDLILLDLNLPGIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + KV+ ++ +AV+ L KPF +L V LL +
Sbjct: 62 LLRTLRAQHSETKVLILSARSAVSDRIVGLDAGADDYLVKPFAFGELEARVRNLLRRE 119
>gi|302873857|ref|YP_003842490.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
gi|307689897|ref|ZP_07632343.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
gi|302576714|gb|ADL50726.1| response regulator receiver sensor signal transduction histidine
kinase [Clostridium cellulovorans 743B]
Length = 366
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D + + L + GY + S +G A + V+ F+L+L D++MPEMDG E
Sbjct: 8 KILVVDDTPFNIKIVSTILQEVGYNIYSTTSGREALEMVKNIRFNLILLDVMMPEMDGYE 67
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E D+ ++F+T + L KPF+ ++L++ V + +K
Sbjct: 68 VIRKLKNDEDTRDIPIIFLTARGDSESVVRAFDEGAYDYLIKPFNPKELLSRVKTHIELK 127
>gi|73748021|ref|YP_307260.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
gi|73659737|emb|CAI82344.1| DNA-binding response regulator [Dehalococcoides sp. CBDB1]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + +F+ G+ V + NNG A + + +++ D++MP MDG+E
Sbjct: 6 ILIVDDDPIIIKFVKANFVADGWLVTTANNGQEALRILNQNIPDIIVLDVLMPVMDGMET 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ ++ + L+KPF + +L V +L
Sbjct: 66 CIQIRKQ-SSIPIIMLSAKGSSFDKIQCLKLGADDYLTKPFDIDELTARVESVLRR 120
>gi|319778506|ref|YP_004129419.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
MCE9]
gi|317108530|gb|ADU91276.1| transcriptional regulatory protein OmpR [Taylorella equigenitalis
MCE9]
Length = 235
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ K+++ +DD D+R+ L + L + GY+ + ++G D++ L++ D ++P
Sbjct: 1 MNKPLTKVMIVDDDPDLRQLLAQYLNRHGYDTLLVSDGNDLADRIIRFSPDLIVLDRMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG++ R + D+ ++ +T A + KPF R+L+ + +
Sbjct: 61 SGDGVDFCRNLRDQHEDIPIILLTARDETADRVLGLESGADDYIGKPFDPRELLARIETV 120
Query: 118 LTIK 121
L K
Sbjct: 121 LRRK 124
>gi|315644507|ref|ZP_07897639.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
gi|315280014|gb|EFU43311.1| signal transduction histidine kinase, LytS [Paenibacillus vortex
V453]
Length = 1031
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
+LL +DD + L L Y +++ +NG A + +R L++TD +MP M G+
Sbjct: 698 TVLLVDDDPVNLQVLRSLLFAENYNLLTASNGVQALEHIRSGQGIDLVITDWMMPGMSGL 757
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R E +L ++ +T + L KP +L V LL +
Sbjct: 758 QLCRTVREQHTLFELPILMLTARSLPEDVRTGLQAGANDFLRKPVDADELRARVRNLLEL 817
Query: 121 K 121
+
Sbjct: 818 R 818
>gi|312889820|ref|ZP_07749366.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311297746|gb|EFQ74869.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + L + G+ V +G + + + LL++DI++P + GIE
Sbjct: 2 KILIVEDEARIALLVKRGLEEQGHIVAVAYDGMAGKKLALQHDYDLLISDIILPLLSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R P+L V+ +T + L KPF R+L+ + ++ KN
Sbjct: 62 LCREIRMAKPELPVILLTALGTTDDKVEGFDAGADDYLVKPFDFRELLVRIRAVMNRKN 120
>gi|309774605|ref|ZP_07669630.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
gi|308917636|gb|EFP63351.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L GYEV + A + ++ L L D++MPE+
Sbjct: 1 MQTKILVLDDEKEIADLVALYLNNEGYEVHKFYDSRDALEYMKNNRVDLALLDVMMPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E V+ +T + ++KPF+ +LV V L
Sbjct: 61 GFEICKIIREKYM-FPVIMLTAKVEDVDKIQGLSLGADDYITKPFNPLELVARVKAQLRR 119
>gi|307824851|ref|ZP_07655074.1| two component transcriptional regulator, winged helix family
[Methylobacter tundripaludum SV96]
gi|307734209|gb|EFO05063.1| two component transcriptional regulator, winged helix family
[Methylobacter tundripaludum SV96]
Length = 240
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+D +R L+ L +AG+ ++ + A + E L+L D ++P + G+E
Sbjct: 6 ILVVEDEDAIREMLMMVLEQAGFRSIAAADAEDAQKALDEALPDLILLDWMLPGVSGVEW 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + + +L ++ +T ++KPF ++LV + +L
Sbjct: 66 ARRLKKDPMYRELPIILLTARGEEEDKVRGLEIGADDYMTKPFSPKELVARIRAVLRR 123
>gi|284032333|ref|YP_003382264.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283811626|gb|ADB33465.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + + L KAGY+ +G A + ++ S+++ D+++P +
Sbjct: 1 MATRVLVVDDDPTVSNVVSAYLTKAGYDARVVPDGVKAVEVWQQWKPSVVVLDVMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR D V+ ++ + KPF R+LV V LL
Sbjct: 61 GLEVLRRLRSADDGAAVIMLSARGEEEDRLVGLEVGADDYVVKPFSPRELVLRVQALLRR 120
Query: 121 K 121
+
Sbjct: 121 E 121
>gi|225572449|ref|ZP_03781313.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
10507]
gi|225040086|gb|EEG50332.1| hypothetical protein RUMHYD_00746 [Blautia hydrogenotrophica DSM
10507]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L + +EV+ +G A D ++ +L++ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLVRDNFEVIEAADGEEAVDLFYSDKNIALIILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + + ++ +T + +SKPF + LV V +L
Sbjct: 65 EVCREIRK-NSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121
>gi|116749733|ref|YP_846420.1| response regulator receiver protein [Syntrophobacter fumaroxidans
MPOB]
gi|116698797|gb|ABK17985.1| response regulator receiver protein [Syntrophobacter fumaroxidans
MPOB]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L L + GY + +G A D V + + L+L D++MPEMDG E+
Sbjct: 11 ILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDYDLILLDVMMPEMDGFEV 70
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ EL + ++F+T ++KPF+ +L+ V+ L +K
Sbjct: 71 CRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNSEELLARVHAHLELK 129
>gi|299145092|ref|ZP_07038160.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
gi|298515583|gb|EFI39464.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
Length = 1330
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+DD R FLI L Y+V NG A + + + ++++D++MPEMDG+EL
Sbjct: 1084 LIVEDNDDFRNFLINCLKDT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ + V+ +T A ++KPF+L L+ + ++L
Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198
>gi|260435319|ref|ZP_05789289.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Synechococcus sp. WH 8109]
gi|260413193|gb|EEX06489.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Synechococcus sp. WH 8109]
Length = 262
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +RR L+ L +GY V+ +G A + E L++ D+++P++DG +
Sbjct: 22 ILVVDDEAAVRRVLVMRLQLSGYRVICAEDGEQALEMFHNESPDLVVLDVMLPKLDGFAV 81
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++F++ A++ L KPF ++L + +L
Sbjct: 82 CRRLRAE-SCVPIIFLSAVEAISERVAGLDLGADDYLPKPFSPKELEARIATILRR 136
>gi|239941691|ref|ZP_04693628.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239988150|ref|ZP_04708814.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
gi|326778967|ref|ZP_08238232.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|320010461|gb|ADW05311.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
gi|326659300|gb|EGE44146.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 225
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|50954116|ref|YP_061404.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50950598|gb|AAT88299.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 240
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD DMR + + L GY+V NG A +R++ +S D+++P M G E
Sbjct: 2 KLLVVEDDPDMRGLVQRGLAAEGYDVTLMTNGVDALIALRDDTYSAAAIDVMLPGMSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + + ++ +T A+ L+KPF +L V LL +
Sbjct: 62 LCRHIRDSGTAMPILLLTARDAIEDRVHGLDSGADDYLTKPFAFAELAARVRALLRRE 119
>gi|21221456|ref|NP_627235.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|289771258|ref|ZP_06530636.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|7799208|emb|CAB90924.1| putative two-component system response regulator [Streptomyces
coelicolor A3(2)]
gi|289701457|gb|EFD68886.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|23016749|ref|ZP_00056502.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD ++ L + L GY V + +G + + E L++ D+++P D
Sbjct: 1 MT-HVLIVDDDPEICALLTQFLTGQGYTVATAGDGDTMRQALVNEAADLVILDLMLPGED 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R L ++ +T + L+KPF R+L+ + +L
Sbjct: 60 GLSLCRHLRATTS-LPIIMLTAMGSETDRVVGLEMGADDYLAKPFSTRELLARIRAVLRR 118
>gi|310639847|ref|YP_003944605.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309244797|gb|ADO54364.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 219
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 56/116 (48%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+LA+D+ + +FL L GYEV + NG+ A D RE + + D++MPEM+G E+
Sbjct: 1 MLADDEPHILQFLELGLINEGYEVRTAENGSDALDLAREFRPHVAVLDVMMPEMNGFEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + ++ V+ +T V + KPF +L+ + L +
Sbjct: 61 QSLKETEDNIAVIMLTAKDDVDDRVKGLKLGADDYIVKPFSFNELLARIEARLRNQ 116
>gi|294013097|ref|YP_003546557.1| CheY-like response regulator [Sphingobium japonicum UT26S]
gi|292676427|dbj|BAI97945.1| CheY-like response regulator [Sphingobium japonicum UT26S]
Length = 239
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+++ +LL +D+ +R L + LG+ G+ V + N A A ++ L++ DI+MP
Sbjct: 1 MSERPHLLLVDDERSIREPLAQYLGRNGFRVTAVENAAEARVRLNANAIDLVILDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R E ++ V+ +T + + KPF R+LV + +
Sbjct: 61 EDGLSLCRHIRE-TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIF 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|291448820|ref|ZP_06588210.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
gi|291351767|gb|EFE78671.1| response regulator mprA [Streptomyces roseosporus NRRL 15998]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+R + L GYEV +G +A V L+ D++MP +DG+
Sbjct: 6 RILVAEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVMMPALDGLA 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ V+ +T ++V+ D L KPF L +LV V LL
Sbjct: 66 VCRRLRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRR 122
>gi|260771196|ref|ZP_05880123.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
furnissii CIP 102972]
gi|260613793|gb|EEX38985.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
furnissii CIP 102972]
Length = 1113
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G V EE LLL DI+MP M G ++
Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L V+ +T LSKPF+ ++L + LT
Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 824
>gi|167765588|ref|ZP_02437652.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
gi|167712773|gb|EDS23352.1| hypothetical protein CLOSS21_00082 [Clostridium sp. SS2/1]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
MN+ KIL+ +D+ MR+ + L +AGY+V+ +G A D +LL+ D++MP+
Sbjct: 1 MNELKILVVDDESRMRKLVKDFLTRAGYQVLEAQDGEEAVDTFYSIKGINLLVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ + ++ + ++ +T + +SKPF + LV V +L
Sbjct: 61 MDGWEVVKEIRKV-SKVPIIMLTAKDQEQDELLGFELGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|219848756|ref|YP_002463189.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219543015|gb|ACL24753.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DDD ++ + L + GY V+ +G A +R++ L++ DI++P++DG+
Sbjct: 6 TILVVDDDDGLQELVRVRLEQEGYRVLQTISGIEAISLIRQQRPDLVILDIMLPDLDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ +T AA L+KPF+ +L+ + LL
Sbjct: 66 VCQRVRE-FASTPILMLTAKAASRDIITGLDQGADDYLTKPFNYDELLARIRTLLRR 121
>gi|291550471|emb|CBL26733.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L + GY V+ +G A D ++ +L++ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLTREGYMVLEAGDGMEAMDLFYEDKDIALIILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R E + ++ +T + + +SKPF + LV VN +L
Sbjct: 65 QVCREVRE-TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121
>gi|326319003|ref|YP_004236675.1| winged helix family two component transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323375839|gb|ADX48108.1| two component transcriptional regulator, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 248
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L + G ++G A R+ ++L DI +P MDG++L
Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRAHQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E V+ +T A + KPF ++V V +L
Sbjct: 74 LRAIREDG-QTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVLRR 128
>gi|268317907|ref|YP_003291626.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
gi|262335441|gb|ACY49238.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
Length = 523
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL EDD D+ + L + GYEVV NG A + R+ L++ D+ +P MDG
Sbjct: 395 KRRILLVEDDPDIAALIQIRLQRDGYEVVHLANGREAAEWARQHTADLVILDVKLPGMDG 454
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ ++ +T + + KPF +L V RLL
Sbjct: 455 FELLAFLRAQPAFAEVPIVMLTSLSQEQHVVRGFELGADDYVVKPFSPVELSARVRRLLH 514
Query: 120 IK 121
+
Sbjct: 515 RQ 516
Score = 90.6 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
++LL E DD + L L ++ A A ++++ L++T++ +P++DG
Sbjct: 103 RLLLVEPDDGLADLLTAMLQTPYRQIHRVATAAEAQQWLQQQRSAHLIITELFLPDLDGR 162
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ ++ + A+ + A VL KPF +L V LL
Sbjct: 163 SLILWIRQQPQTQQMPILVLSAHLSSAVKAECYALGADDVLEKPFDPAELSLIVASLLQR 222
>gi|262371688|ref|ZP_06064967.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
gi|262311713|gb|EEY92798.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I+L ED+ ++ + + L AG+EV ++G AY + ++ SL++ D+++P MDG+
Sbjct: 2 KHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRR 118
>gi|253576700|ref|ZP_04854027.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
gi|251843910|gb|EES71931.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M+ K+L+ ED++ +R F++ L + G++V+ +G A K++ P + L D+++P +
Sbjct: 1 MS-KVLILEDEESIRSFIVINLKRNGFDVLEAADGNEALSKLQSVPDIDIALLDVMVPGI 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RR E + + ++F+T + + +SKPF +L+ + LL
Sbjct: 60 DGFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|162450832|ref|YP_001613199.1| sigma-54 dependent DNA-binding response regulator [Sorangium
cellulosum 'So ce 56']
gi|161161414|emb|CAN92719.1| sigma-54 dependent DNA-binding response regulator [Sorangium
cellulosum 'So ce 56']
Length = 481
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ ++RR L L + GYEV + +G ++E L++TD+ MP++DG
Sbjct: 5 KKQILVVDDEANLRRVLSAQLSRDGYEVHTAEDGEEGLAFLKEHHIDLVITDLRMPKVDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L R A DP V+ +T V ++ ++KPF ++ V + L +
Sbjct: 65 MDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALRTR 124
Query: 122 N 122
+
Sbjct: 125 D 125
>gi|148266303|ref|YP_001233009.1| two component transcriptional regulator [Geobacter uraniireducens
Rf4]
gi|146399803|gb|ABQ28436.1| two component transcriptional regulator, winged helix family
[Geobacter uraniireducens Rf4]
Length = 224
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + YEV++ ++G + P+ L++ D ++P+ DG+
Sbjct: 2 RILVVEDEKKVLSFIKRGLEEEQYEVLTASDGEEGLKMALDMPYDLIILDWMLPKQDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T +V + L+KPF +L+ V LL
Sbjct: 62 VLKELRNQKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALLRR 118
>gi|55820412|ref|YP_138854.1| response regulator [Streptococcus thermophilus LMG 18311]
gi|55822294|ref|YP_140735.1| response regulator [Streptococcus thermophilus CNRZ1066]
gi|55736397|gb|AAV60039.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
thermophilus LMG 18311]
gi|55738279|gb|AAV61920.1| response regulator (homolog to csrR/covR Spy) [Streptococcus
thermophilus CNRZ1066]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + D +M +T ++ + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKDTYIMMMTARDSIMDIVAGLDRGADDYIIKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|163942268|ref|YP_001647152.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163864465|gb|ABY45524.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAIPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|293370405|ref|ZP_06616959.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292634553|gb|EFF53088.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 1417
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1160 ILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1218
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L V LL +
Sbjct: 1219 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQR 1277
>gi|291542818|emb|CBL15928.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus bromii
L2-63]
Length = 235
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D+ ++ + L GY V NG A + + + L + D+++P++D
Sbjct: 1 MSEQILIVDDEKEIADLIEVYLKNDGYTVHKFYNGLDALECIETQKMDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ ++V V L
Sbjct: 61 GFRICQKIREQYFY-PIIILTAKVEDTDKIMGLTIGADDYITKPFNPLEVVARVKTQLRR 119
>gi|168179635|ref|ZP_02614299.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182669357|gb|EDT81333.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MQEKILIVDDEDDIVSFMKDYFEDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + ++F++ + + KPF +++L V L
Sbjct: 60 GFQVCQNIRDKVS-CPIIFLSARQSEVDKIKGLGVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|56751418|ref|YP_172119.1| two-component response regulator for energy transfer from
phycobilisomes to photosystems [Synechococcus elongatus
PCC 6301]
gi|56686377|dbj|BAD79599.1| two-component response regulator for energy transfer from
phycobilisomes to photosystems [Synechococcus elongatus
PCC 6301]
Length = 249
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L +GY+V +G + L++ D+++P +D
Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R E ++ V+ +T + L+KPF + +++ V LL
Sbjct: 61 GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|86141687|ref|ZP_01060211.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
gi|85831250|gb|EAQ49706.1| DNA-binding response regulator [Leeuwenhoekiella blandensis MED217]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY+V++ +NG ++ L++ D++MP
Sbjct: 1 MKKKEIKILLVDDEPDILEIVGYNLSNEGYQVITASNGKEGVKAAKKNNPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + +L + + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACEQIRKLPGHEETIIAFLTARGEDYSQVAGYDAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|312862512|ref|ZP_07722754.1| response regulator ArlR [Streptococcus vestibularis F0396]
gi|311101917|gb|EFQ60118.1| response regulator ArlR [Streptococcus vestibularis F0396]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + + +M +T + + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKNTYIMMMTARDLIMDIVAGLDRGADDYIVKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|28210565|ref|NP_781509.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28203002|gb|AAO35446.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+AED+ D+R L L K Y V NG A D + L + DI+MP +D
Sbjct: 1 MN--ILIAEDEQDIRELLGLHLIKEDYNVYEACNGIEALDVFNKNDIDLAILDIMMPGLD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E ++ V+FIT + KPF ++V V L
Sbjct: 59 GFKVLKKIREK-SNIPVIFITARGEDENKILGLGLGADDYIVKPFSPMEVVARVKALFRR 117
>gi|73662632|ref|YP_301413.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642594|sp|Q49XM7|ARLR_STAS1 RecName: Full=Response regulator ArlR
gi|72495147|dbj|BAE18468.1| response regulator ArlR [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 220
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ ++ RF+ L Y+V +G +K + L+L D+++P ++
Sbjct: 1 MT-KILIVEDEQNLARFIELELEHENYDVDIEYDGKPGLEKALSNTYDLILLDLMLPNIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRQIRQ-NQTTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAMLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|323356976|ref|YP_004223372.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323273347|dbj|BAJ73492.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L G++ V C +GA A D R E L+L D+++P +D
Sbjct: 1 MTSRILVVDDDTALAEMIGIVLRTEGFDTVFCADGAQAVDAWRTERPDLILLDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ R + ++ +T A + KPF+ ++LV + L
Sbjct: 61 GIEICTRVRAE-SGVPIIMLTARTDTADVVKGLESGADDYIMKPFNPKELVARIRTRLR 118
>gi|296187359|ref|ZP_06855754.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|296047881|gb|EFG87320.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD D+R L+ K GY V NG ++ + FSL+L D++MP+MD
Sbjct: 1 MKENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + E ++ V+ +T + KPF +L V +L
Sbjct: 61 GYTMLCKLRE-SSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 119
>gi|238894841|ref|YP_002919575.1| putative two-component response transcriptional regulator
[Klebsiella pneumoniae NTUH-K2044]
gi|238547157|dbj|BAH63508.1| putative two-component response transcriptional regulator
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
Length = 246
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R ++ L K+GY NG + + ++ L++ DI+MP DG+
Sbjct: 6 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ V+ +T + L KPF R+L+ + +L
Sbjct: 66 LCRQLRANPQQDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123
>gi|206974313|ref|ZP_03235230.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217958161|ref|YP_002336705.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|222094323|ref|YP_002528382.1| response regulator [Bacillus cereus Q1]
gi|206747553|gb|EDZ58943.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217064677|gb|ACJ78927.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|221238380|gb|ACM11090.1| probable response regulator [Bacillus cereus Q1]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + ++F+T ++ + KPF +L + LL
Sbjct: 61 VIQRIRDEKIETPILFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|197120859|ref|YP_002132810.1| transcriptional regulator [Anaeromyxobacter sp. K]
gi|196170708|gb|ACG71681.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter sp. K]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 56/114 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD + R L LG GY V S +G + R E L++ D+++P M
Sbjct: 1 MAERILVIEDDPSILRGLQLNLGMEGYTVRSATDGETGLQLARTEQPDLVVVDVMLPRMG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
G+E+ R + DP+L ++ ++ L KPF L++L+ +
Sbjct: 61 GLEVVREIRKEDPELPILILSAKNQETDKVAGLQLGADDYLGKPFGLKELLARI 114
>gi|254230485|ref|ZP_04923860.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
Ex25]
gi|151936991|gb|EDN55874.1| sensory box sensor histidine kinase/response regulator [Vibrio sp.
Ex25]
Length = 1128
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY + + ++G V +E LLL DI+MP M G ++
Sbjct: 726 VADDEPVNLRVLESFLRLEGYRIRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCS 785
Query: 67 RATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T + LSKPF+ ++L + LT
Sbjct: 786 ELRETYDHAELPIIMLTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLT 840
>gi|154498433|ref|ZP_02036811.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
29799]
gi|150272501|gb|EDM99686.1| hypothetical protein BACCAP_02422 [Bacteroides capillosus ATCC
29799]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+L+ ED+ ++R F++ L +AGYE + G A ++R P + L DI++P+MDG
Sbjct: 2 KKVLVLEDESNIRSFVVINLKRAGYEAIEAETGEEALAQLRRNPDIKVALLDIMLPDMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR D + ++ +T ++KPF +L ++ L
Sbjct: 62 FEVCRRIRASDSQIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARIDALYRR 120
>gi|157165503|ref|YP_001467191.1| response regulator receiver domain-containing protein
[Campylobacter concisus 13826]
gi|112801411|gb|EAT98755.1| transcriptional activator protein CopR [Campylobacter concisus
13826]
Length = 219
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + + L K GY V S NG A D + L++ D++MP MDG+
Sbjct: 2 KILVVEDEIDLNSVITRHLKKNGYSVDSACNGEEAMDFTAVAHYDLIVLDLMMPVMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R+ V+ +T V L KPF ++L+ V L+
Sbjct: 62 FLQRSRAAKLVTPVLILTAKDDVDDVVKGLDAGADDYLVKPFDFKELLARVRTLIRR 118
>gi|16331854|ref|NP_442582.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1208484|dbj|BAA10652.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 241
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILIIDDDPAISDLVSINLEMAGYDVQQAVDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTADIPVLMLTALGQIQDKIQGFDSGADDYLTKPFDVEEMLARVRALLRR 121
>gi|229190002|ref|ZP_04317010.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
gi|228593494|gb|EEK51305.1| Two-component response regulator vanR [Bacillus cereus ATCC 10876]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|297580749|ref|ZP_06942675.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
gi|297535165|gb|EFH74000.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae RC385]
Length = 1177
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 773 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 832
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 833 VKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 888
>gi|68535406|ref|YP_250111.1| two-component system response regulator TcsR1 [Corynebacterium
jeikeium K411]
gi|68263005|emb|CAI36493.1| two-component system response regulator TcsR1 [Corynebacterium
jeikeium K411]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G++V + +NG A + D++MP MDG
Sbjct: 8 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D +F+T V ++KPF L +++ + +L
Sbjct: 68 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124
>gi|21241807|ref|NP_641389.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|78046628|ref|YP_362803.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325926361|ref|ZP_08187691.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas perforans 91-118]
gi|325927126|ref|ZP_08188393.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas perforans 91-118]
gi|21107184|gb|AAM35925.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|78035058|emb|CAJ22703.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325542509|gb|EGD13984.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas perforans 91-118]
gi|325543254|gb|EGD14687.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas perforans 91-118]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|30261916|ref|NP_844293.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47527169|ref|YP_018518.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49184751|ref|YP_028003.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65319193|ref|ZP_00392152.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|167633325|ref|ZP_02391650.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167638767|ref|ZP_02397042.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170686070|ref|ZP_02877292.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170707305|ref|ZP_02897760.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177650467|ref|ZP_02933434.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190566270|ref|ZP_03019188.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|229603598|ref|YP_002866289.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254684475|ref|ZP_05148335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254724002|ref|ZP_05185788.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254734778|ref|ZP_05192490.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741180|ref|ZP_05198868.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254759968|ref|ZP_05211992.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30256542|gb|AAP25779.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47502317|gb|AAT30993.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49178678|gb|AAT54054.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|167513231|gb|EDR88602.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167531363|gb|EDR94041.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170127804|gb|EDS96676.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170669767|gb|EDT20508.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172083611|gb|EDT68671.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190562405|gb|EDV16372.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|229268006|gb|ACQ49643.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|315179198|gb|ADT86112.1| sensory box sensor histidine kinase/response regulator [Vibrio
furnissii NCTC 11218]
Length = 1113
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G V EE LLL DI+MP M G ++
Sbjct: 709 LVADDEPVNLRVLDSFLRLEGYRVRTAQDGNEVLQAVAEEKPELLLLDIMMPGMSGYQVC 768
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L V+ +T LSKPF+ ++L + LT
Sbjct: 769 EELRKTYDHAALPVIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 824
>gi|299536046|ref|ZP_07049363.1| two-component response regulator YcbL [Lysinibacillus fusiformis
ZC1]
gi|298728470|gb|EFI69028.1| two-component response regulator YcbL [Lysinibacillus fusiformis
ZC1]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD+ +R + L G+ V + NG A + F L++ DI++P+++
Sbjct: 1 MQKHILLVEDDEAIREMVDNYLTMEGFNVTTATNGEEALHNCLQNTFDLVILDIMIPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E L ++ ++ + ++KPF + + V ++
Sbjct: 61 GLEVLKIIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRR 119
>gi|228989718|ref|ZP_04149700.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228995917|ref|ZP_04155575.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229003534|ref|ZP_04161352.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757772|gb|EEM06999.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228763889|gb|EEM12778.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|228770052|gb|EEM18634.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + N+G A + ++++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKANSGIEALELIQQKNFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF + LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLVARIEAVLRR 118
>gi|229118027|ref|ZP_04247387.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock1-3]
gi|228665476|gb|EEL20958.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock1-3]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|30018758|ref|NP_830389.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|29894299|gb|AAP07590.1| Two-component response regulator [Bacillus cereus ATCC 14579]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 9 SMRLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 68 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 126
>gi|328882803|emb|CCA56042.1| DNA-binding response regulator mtrA [Streptomyces venezuelae ATCC
10712]
Length = 225
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|269925905|ref|YP_003322528.1| response regulator receiver protein [Thermobaculum terrenum ATCC
BAA-798]
gi|269789565|gb|ACZ41706.1| response regulator receiver protein [Thermobaculum terrenum ATCC
BAA-798]
Length = 278
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ + L + L GY V + +G A D +R P L++ DI++P +D
Sbjct: 1 MS-RILVVDDEPALLDLLKEHLTMEGYTVDTAPSGEYALDLMRIRPPDLVILDIMLPGID 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R D+ V+ +T + + ++KPF + +L+ + L
Sbjct: 60 GYEVCTRMQADPKLQDIPVIMLTAKSLTSDLVAGYESGAEDYVTKPFDIDELLIRIRARL 119
>gi|182418948|ref|ZP_02950205.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium butyricum 5521]
gi|237668366|ref|ZP_04528350.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377231|gb|EDT74799.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium butyricum 5521]
gi|237656714|gb|EEP54270.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + L L +GYE +G A +EE +L+L D+++P M
Sbjct: 1 MTREKILIVDDEEHIVELLDFNLKNSGYETFIATDGIEAVRIAKEEKPNLILLDLMIPGM 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + + ++ +T ++KPF +R+L+ V +
Sbjct: 61 DGFDVCKEIKKDKEMKNTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|206968423|ref|ZP_03229379.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218232940|ref|YP_002365368.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|206737343|gb|EDZ54490.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|218160897|gb|ACK60889.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|319442462|ref|ZP_07991618.1| two-component system response regulator [Corynebacterium variabile
DSM 44702]
Length = 244
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ + L ++V + N+GASA + ++ + D++MP MDG
Sbjct: 19 RVLVVDDEANIADLIKARLEFQDFDVRTANDGASALEIAKDFQPDAYILDVMMPGMDGFT 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + V+F+T AV ++KPF L +++ + +L
Sbjct: 79 VLNKLREAGDEAPVLFLTAKDAVDDRIHGLTLGADDYVTKPFALEEVITRLRVILRR 135
>gi|226946662|ref|YP_002801735.1| response regulator [Azotobacter vinelandii DJ]
gi|226721589|gb|ACO80760.1| response regulator [Azotobacter vinelandii DJ]
Length = 267
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ D+R L + L GY V + + G + E F +L+ D++MP DG+
Sbjct: 30 RILVVDDEQDLRALLQRYLSDQGYAVRALDGGQHLERLLGRERFDVLVLDVMMPGEDGLS 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T L KPF+ R+L + L+ +
Sbjct: 90 LCRRLRARGETIPIVMLTARGDPLDRIIGLEMGADDYLPKPFNPRELQARIEALIRRQ 147
>gi|225374627|ref|ZP_03751848.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
16841]
gi|225213520|gb|EEG95874.1| hypothetical protein ROSEINA2194_00243 [Roseburia inulinivorans DSM
16841]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+A+D+ ++R L L Y V+ +G A D +R E +L + DI+MP++D
Sbjct: 1 MDYKILIADDEPEIRNLLRLYLENENYHVIEAEDGQRALDLLRAEQPALCILDIMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ + ++ V+ ++ A + L+KPF+ + V VN +
Sbjct: 61 GYHVLQQIRKE-SNIPVIILSAKDADSEKILGLNLGADDYLAKPFNPLEAVARVNSNIRR 119
>gi|224538431|ref|ZP_03678970.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
14838]
gi|224519936|gb|EEF89041.1| hypothetical protein BACCELL_03325 [Bacteroides cellulosilyticus DSM
14838]
Length = 1426
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++++R FL+ L K Y ++ +G S D L+++DI+MP MDGIEL
Sbjct: 1179 ILIVEDNEELRHFLVNMLQK-DYRILEAADGKSGLDLTVSAMPDLIISDIMMPVMDGIEL 1237
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ A++ ++KPF L ++ LL ++
Sbjct: 1238 LEAVKKNHDISHIPFILLSAKASLDDRIQGLEYGADDYITKPFSSSYLKARISSLLKQRD 1297
>gi|254304225|ref|ZP_04971583.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
gi|148324417|gb|EDK89667.1| response regulator [Fusobacterium nucleatum subsp. polymorphum ATCC
10953]
Length = 224
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L K + V S +G A + + + +++ D++MP+M+G E
Sbjct: 2 KILVVEDEKDLNNIITKHLKKNNFSVDSVFDGEEALEYLNYGDYDVIILDVMMPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + L KPF R+L+ + L+ K
Sbjct: 62 VVKNLRANKNETAVLMLTARDGIDEKIKGLDLGADDYLVKPFDFRELIARIRALVRRK 119
>gi|118580077|ref|YP_901327.1| two component sigma54 specific Fis family transcriptional regulator
[Pelobacter propionicus DSM 2379]
gi|118502787|gb|ABK99269.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter propionicus DSM 2379]
Length = 462
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ MR FL L GYE V + A + F L+++D+ MP +D
Sbjct: 1 MKTRILIVDDELSMREFLSILLEGEGYETVVAAHAEQALSLLDSGLFDLVISDVQMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIEL R + P V+ +T + A ++ +SKPF + ++ + L
Sbjct: 61 GIELLSRIKTVSPGTAVLMMTAYCAAEQAVEAMKLGAYDYISKPFKVEEIKVLIRNALE 119
>gi|308231597|ref|ZP_07663887.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu001]
gi|308369995|ref|ZP_07666840.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu002]
gi|308370458|ref|ZP_07666935.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu003]
gi|308371718|ref|ZP_07667231.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu004]
gi|308373532|ref|ZP_07667599.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu005]
gi|308374053|ref|ZP_07667699.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu006]
gi|308375208|ref|ZP_07667966.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu007]
gi|308376453|ref|ZP_07668274.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu008]
gi|308377474|ref|ZP_07479280.2| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu009]
gi|308378680|ref|ZP_07668799.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu010]
gi|308379824|ref|ZP_07669054.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu011]
gi|308395904|ref|ZP_07669353.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu012]
gi|308216603|gb|EFO76002.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu001]
gi|308325660|gb|EFP14511.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu002]
gi|308331909|gb|EFP20760.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu003]
gi|308335696|gb|EFP24547.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu004]
gi|308337275|gb|EFP26126.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu005]
gi|308343200|gb|EFP32051.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu006]
gi|308347069|gb|EFP35920.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu007]
gi|308351012|gb|EFP39863.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu008]
gi|308355644|gb|EFP44495.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu009]
gi|308359599|gb|EFP48450.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu010]
gi|308363527|gb|EFP52378.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu011]
gi|308367210|gb|EFP56061.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis SUMu012]
gi|323720956|gb|EGB30021.1| two component system transcriptional regulator tcrA [Mycobacterium
tuberculosis CDC1551A]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 5 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 65 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 121
>gi|298208466|ref|YP_003716645.1| two-component system, transcriptional regulatory protein
[Croceibacter atlanticus HTCC2559]
gi|83848389|gb|EAP86258.1| two-component system, transcriptional regulatory protein
[Croceibacter atlanticus HTCC2559]
Length = 236
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L YEV NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNDYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIQAIMQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|254414953|ref|ZP_05028716.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196178100|gb|EDX73101.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 1317
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + + + L AG+EV +G + + L+L D++MP+MDG E
Sbjct: 10 ILVIDDTPENLKLVSDFLRDAGFEVRIAKSGEQGLKLLEKLNPDLILLDVMMPDMDGFEA 69
Query: 65 ARRAT--ELDPDLKVMFITGFAAV---ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R E D+ V+F+T + +SKP L +++ V L
Sbjct: 70 CRHLKAWEKTKDIPVIFMTAAVDTSNCEAKVKGLSLGAVDYISKPIQLDEVLARVKIHLH 129
Query: 120 IK 121
+K
Sbjct: 130 LK 131
>gi|182418144|ref|ZP_02949444.1| DNA-binding response regulator [Clostridium butyricum 5521]
gi|237666136|ref|ZP_04526123.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182377962|gb|EDT75502.1| DNA-binding response regulator [Clostridium butyricum 5521]
gi|237658226|gb|EEP55779.1| DNA-binding response regulator TctD [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 226
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + + K LGK GY V ++G A + +++ D+ +P++DGIE
Sbjct: 2 KLLVVEDEKTLANIIKKGLGKYGYAVDVASDGEEALWYYDINEYDVIILDLNLPKIDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + D ++K++ ++ + L KPF +L + L+ K
Sbjct: 62 VLKQIRQKDSEIKILILSARTQIEDRVLGLDEGANDYLVKPFDFLELEARIRSLIRRK 119
>gi|167767348|ref|ZP_02439401.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
gi|317497415|ref|ZP_07955737.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167711323|gb|EDS21902.1| hypothetical protein CLOSS21_01867 [Clostridium sp. SS2/1]
gi|291559353|emb|CBL38153.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
gi|316895335|gb|EFV17495.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 223
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+R + K L + Y V +C +G A D + + +L DI++P DG
Sbjct: 2 RILVVEDEKDLRNIIKKRLVREHYSVDACGDGEEALDYMEMTSYDGVLLDIMLPGKDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ D ++ +T + L KPF +L+ + ++ K
Sbjct: 62 VLKEVRQMGNDTPILLLTARDGIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRK 119
>gi|42779375|ref|NP_976622.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42735291|gb|AAS39230.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 233
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLIKIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|333024984|ref|ZP_08453048.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
gi|332744836|gb|EGJ75277.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
Length = 260
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MD
Sbjct: 36 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMD 94
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154
>gi|312127464|ref|YP_003992338.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
gi|311777483|gb|ADQ06969.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor hydrothermalis 108]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KSILIVDDEQHILELLKFNLRKEGYNTFEADSGLQALEILKHNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|302521367|ref|ZP_07273709.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302430262|gb|EFL02078.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 260
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MD
Sbjct: 36 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMD 94
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 95 GLEVARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 154
>gi|257094547|ref|YP_003168188.1| winged helix family two component transcriptional regulator
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257047071|gb|ACV36259.1| two component transcriptional regulator, winged helix family
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 243
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+++LL EDDD + L L AGY + ++G A + + + ++L D+++P D
Sbjct: 1 MNEQLLLVEDDDAIAAALRLHLEAAGYRLHRESDGLQAMAAIDRQRWDMVLLDLMLPGAD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R D+ V+ ++ +A A L+KPF + +LV V LL
Sbjct: 61 GWDVCRHLRARHADVPVIMLSARSAEAHRVLGLELGADDYLAKPFSMLELVARVRALLRR 120
>gi|256389440|ref|YP_003111004.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256355666|gb|ACU69163.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 238
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 57/115 (49%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD ++R + +A GY V + + G +A ++V +P ++ D++MPE+DG+E+
Sbjct: 15 LVVDDDTEIRDAIARAFRLQGYRVRTASGGLAALEQVAADPPDAIVLDVMMPELDGVEVC 74
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ +T AV L KPF L +L + LL
Sbjct: 75 RRLRGVGDHTPVLLLTARDAVGDRVAGLDAGADDYLVKPFALAELHARMRALLRR 129
>gi|229116660|ref|ZP_04246046.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228666832|gb|EEL22288.1| Two-component response regulator [Bacillus cereus Rock1-3]
Length = 228
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY ++ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|39996422|ref|NP_952373.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|39983302|gb|AAR34696.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
Length = 460
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G
Sbjct: 9 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + PD V+ IT F AV D+ ++KPF+ L V + L +
Sbjct: 69 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 125
>gi|291563929|emb|CBL42745.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 234
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY+V NN + + +E L+L DI+MP MDG+E+
Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYKVFKANNAKEGLEILDQEEIHLVLLDIMMPGMDGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CRKIRETN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120
>gi|291518264|emb|CBK73485.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 229
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L + +EV +G K + + + D+++P +D
Sbjct: 1 MS-RILIIEDEEAIAELEKDYLELSNFEVDIEADGEKGLQKALAGNYDMYILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R E+ ++ ++ +T ++KPF +LV V L
Sbjct: 60 GFELCKRIREV-KNVPILMVTAKKEEIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118
>gi|282899348|ref|ZP_06307317.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281195805|gb|EFA70733.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
Length = 249
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-------EEPFSLLLTDIVM 56
++L+ ED++ +R L+ AL GYEV++ +G A + +R E F LL+ D+++
Sbjct: 19 RVLIVEDEELIREMLVVALEGEGYEVMTAKDGRCAVELIRNLETQPGELSFDLLVLDLML 78
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+++G+++ R + ++ ++ + L+KPF +R++V
Sbjct: 79 PQINGLDICRLLRHQGNSIPILILSAKGSETDRVLGLEVGADDYLTKPFSMREMVARCRA 138
Query: 117 LLTIK 121
LL +
Sbjct: 139 LLRRQ 143
>gi|239817228|ref|YP_002946138.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
gi|239803805|gb|ACS20872.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
Length = 230
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ ED+ D+ + L AGYE +G SA D + P L L DI++P +D
Sbjct: 1 MT-RIVIVEDELDIASVVQDYLRHAGYETTHFADGQSALDHLIATPPELTLLDIMLPRLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RRA E ++ +T + KPF R+LV V +L
Sbjct: 60 GIEVLRRAREHTSH-PIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRR 118
>gi|160890899|ref|ZP_02071902.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
gi|156859898|gb|EDO53329.1| hypothetical protein BACUNI_03344 [Bacteroides uniformis ATCC 8492]
Length = 658
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED++++ + +++ L + Y V + NG A + E L+++D++MP MDGI
Sbjct: 405 HTILVVEDNEELLQLMVRLLKRE-YNVHTAENGQEAVTVLDNEDIDLIVSDVMMPVMDGI 463
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R + V+ +T ++ +SKPF+L L + LL
Sbjct: 464 EFCRCVKNKLELSHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKY 523
Query: 121 K 121
K
Sbjct: 524 K 524
>gi|70732161|ref|YP_261917.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
gi|68346460|gb|AAY94066.1| DNA-binding response regulator ColR [Pseudomonas fluorescens Pf-5]
Length = 227
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + ++
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFKSGADDYLLKPFALSELAARIEAVMRR 119
>gi|330807931|ref|YP_004352393.1| two-component Response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376039|gb|AEA67389.1| Putative two-component Response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 243
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL +DD ++R L L +AG++V + +GA + + P L++ D+++P+ DG
Sbjct: 5 NKSILLVDDDQEIRELLDTYLSRAGFQVRTTPDGAGFRQALNDAPSDLVILDVMLPDEDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 65 FSLCRWVRQHPRQAHVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|289568536|ref|ZP_06448763.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
tcrA [Mycobacterium tuberculosis T17]
gi|289542290|gb|EFD45938.1| LOW QUALITY PROTEIN: two component system transcriptional regulator
tcrA [Mycobacterium tuberculosis T17]
Length = 237
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 24 RILVVEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 140
>gi|228914504|ref|ZP_04078113.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228844823|gb|EEM89865.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 242
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|209520041|ref|ZP_03268818.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209499526|gb|EDZ99604.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 246
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +DD +R L K L G++ ++G ++ E S+++ DI+MP D
Sbjct: 1 MNPQVLIVDDDPVVRDLLCKFLQSNGFDASVLHDGTHLQRRLERERPSVVVLDIMMPNTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ D+ V+F+T VA + L+KPF R+L+ + +L
Sbjct: 61 GLRALTALRAAGDDIPVIFVTARGTVADRIVGLSLGADDYLTKPFDPRELLVRIQTVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|78187074|ref|YP_375117.1| two component transcriptional regulator [Chlorobium luteolum DSM
273]
gi|78166976|gb|ABB24074.1| two component transcriptional regulator, winged helix family
[Chlorobium luteolum DSM 273]
Length = 232
Score = 148 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RFL + L + + V + +G S + + L L D ++P++ GIE
Sbjct: 2 RLLIIEDEPGIARFLKEGLEEEHFAVDTAFDGESGLELGMSNDYDLCLIDWMLPKLSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R+ + + V+F+T + + KPF +L+ + L
Sbjct: 62 VCRQLRKAGSAVPVIFLTARDTLDDVVFGLGAGADDYVKKPFAFEELLARIRARLR 117
>gi|268611080|ref|ZP_06144807.1| two component transcriptional regulator, winged helix family
protein [Ruminococcus flavefaciens FD-1]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ + + + GY++V+ ++G A DK R E F +++ D++MP+ DG
Sbjct: 3 KILIVDDEPNIVTLISRYAQREGYDIVTASDGREAIDKCRSEDFDVIIMDVMMPDTDGFT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ E D+ V+ ++ ++KPF +L+ + +L+
Sbjct: 63 ACKKIKE-FKDIPVIMLSARGTEFDKLFGFEVGVDDYVTKPFSPMELMARIKVILS 117
>gi|172035886|ref|YP_001802387.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
gi|171697340|gb|ACB50321.1| two-component transcription regulator [Cyanothece sp. ATCC 51142]
Length = 225
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L +L + Y V +G ++ + + L+L D+++P++ GI
Sbjct: 3 RILLVEDDERIAKVLAASLTEQRYTVDMAGDGEKGWEFIEALAYDLILLDVMLPKLTGIG 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + + V+ +T + KPF + +L+ + LL N
Sbjct: 63 LCQRIRQSGYTIPVLMLTAKDTSEDKVMGLDVGADDYVVKPFDVPELLARIRALLRRGN 121
>gi|50954325|ref|YP_061613.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
gi|50950807|gb|AAT88508.1| two-component system, regulatory protein [Leifsonia xyli subsp.
xyli str. CTCB07]
Length = 227
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L G++ V C +G+ A RE L+L D+++P +D
Sbjct: 1 MTSRILVVDDDTALAEMIGIVLRTEGFDPVFCEDGSEAVGIFRESKPDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ ++ +T + A + KPF+ ++LV + L
Sbjct: 61 GIEVCSSIRAE-SGTPIIMLTAKSDTADVVKGLESGADDYMVKPFNPKELVARIRTRLR 118
>gi|22297889|ref|NP_681136.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22294067|dbj|BAC07898.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 121
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED R + + L K G+EV +G A +++++ +++ DIVMP M+
Sbjct: 1 MT-KVLVVEDSPPQREMISELLAKTGFEVTVATDGVEAMEQLQQSTPDVVVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R+ + V+ + ++KPF ++LV + +LL
Sbjct: 60 GYEVCRQIKSDPRTQSIPVVMCSSKGEEFDRYWGMKQGADAYITKPFDPKELVGTIKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|317969839|ref|ZP_07971229.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. CB0205]
Length = 253
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D++++RR L L G+EV NGA A + R +++ D++MPE+DG
Sbjct: 11 KILVADDEENIRRILETRLVMLGHEVTLAENGAQALEHFRASEPDVVVLDVMMPELDGFA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ +T VA + KPF ++L + ++
Sbjct: 71 VTERIRAQ-SEVPIILLTALGDVADRITGLQLGADDYMVKPFSPKELEARIRCVMRR 126
>gi|317509453|ref|ZP_07967071.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316252282|gb|EFV11734.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 240
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ L + L G+ V +N A V +EP ++ D+++P MDG L
Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFNVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E+ + V+F+T ++ ++KPF L ++V + +L
Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|302871716|ref|YP_003840352.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302574575|gb|ADL42366.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 232
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KSILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|253570096|ref|ZP_04847505.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251840477|gb|EES68559.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1450
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+++++ FL L Y V++ +NG + + L+++D++MP MDG+E
Sbjct: 1192 TILVVEDNEELKTFLKNILS-ENYTVITASNGKEGWQHAVDNIPDLIISDVMMPVMDGLE 1250
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E + + ++ ++ A++ ++KPF L + LL +
Sbjct: 1251 MIRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIASLLRQR 1310
>gi|226325419|ref|ZP_03800937.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
gi|225206162|gb|EEG88516.1| hypothetical protein COPCOM_03224 [Coprococcus comes ATCC 27758]
Length = 235
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + GY V+ +G A D E+ +L++ D++MP
Sbjct: 10 MDKLKILVVDDESRMRKLVRDFLEREGYAVLEAGDGMEAMDIFYEEKDIALIILDVMMPH 69
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + R + + ++ +T + + +SKPF + LV V +L
Sbjct: 70 MDGWQTCREIRKE-SKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVTAIL 128
Query: 119 TIKN 122
N
Sbjct: 129 RRTN 132
>gi|154706185|ref|YP_001425412.1| two-component response regulator [Coxiella burnetii Dugway
5J108-111]
gi|154355471|gb|ABS76933.1| two-component response regulator [Coxiella burnetii Dugway
5J108-111]
Length = 245
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L K L + G+E +G+ + ++ L++ DI+MP DG+
Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQAILLKQAVDLVILDIMMPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +T + LSKPF+ R+L+ V +L
Sbjct: 66 LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>gi|86608608|ref|YP_477370.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557150|gb|ABD02107.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 339
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D + R L L GY V +G A ++ L+L D++MP +DG E
Sbjct: 23 HLLIVDDQPNSRLLLGDLLQSIGYRVSEAESGNQALQMLKTFQPDLILLDVMMPGLDGFE 82
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D + V+ +T + LSKPF +L+ V L+ K
Sbjct: 83 VCRRIKANDETRLIPVVLVTAASDHKNRVRGIEAGADDFLSKPFDESELLARVRSLVRQK 142
Query: 122 N 122
+
Sbjct: 143 H 143
>gi|302338300|ref|YP_003803506.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301635485|gb|ADK80912.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D++ + + L L GY+ + G ++ R L++ D+++P +DGI
Sbjct: 10 KTILVVDDEEHVVKLLSMNLTSRGYDCLCAYTGEEGLEQARSHHPDLIILDVMLPGIDGI 69
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R + V+ ++ + ++KPF LR+L V L
Sbjct: 70 EVCRLLKSDPRTQLIPVLMLSAKSEGIDKIHGLEGGADDYITKPFSLRELFLRVEASLR 128
>gi|138895736|ref|YP_001126189.1| two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196248616|ref|ZP_03147316.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134267249|gb|ABO67444.1| Two-component response regulator [Geobacillus thermodenitrificans
NG80-2]
gi|196211492|gb|EDY06251.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL ED+ + RFL L G++V C +G + EP+ L+L D+++P ++
Sbjct: 1 MNGRILLVEDEAGLARFLELDLMHEGFDVHVCGDGREGLELALSEPWDLILLDVMLPSLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ IT +V + KPF + +L+ + L
Sbjct: 61 GMEVCRRIRAAKS-TPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119
>gi|86738952|ref|YP_479352.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86565814|gb|ABD09623.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + AL G++V + ++G +A + P LL+ D+++P++DG
Sbjct: 19 RVLVVDDEEAITDLVTMALRYEGFDVRAAHSGQAALTQAALSPPDLLVLDVMLPDIDGFA 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + +F+T A ++KPF + +L+ V +L
Sbjct: 79 VCERLRRSGQGVPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELIARVRAILRR 135
>gi|158317887|ref|YP_001510395.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158113292|gb|ABW15489.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 228
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++ L L + G+EV +G SA + L+L D+++P + G E
Sbjct: 5 RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRHGADLILLDLMLPGLSGTE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + V+ +T + ++KPF R+LV + +L +
Sbjct: 65 VCRTLRAR-STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRRR 121
>gi|262371046|ref|ZP_06064368.1| transcriptional regulator [Acinetobacter johnsonii SH046]
gi|262313932|gb|EEY94977.1| transcriptional regulator [Acinetobacter johnsonii SH046]
Length = 228
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I+L ED+ ++ + + L AG+EV ++G AYD + SL++ D+++P MDG+
Sbjct: 2 KHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQEAYDSFTQRKPSLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|260904234|ref|ZP_05912556.1| putative two-component system response regulator [Brevibacterium
linens BL2]
Length = 281
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++LL EDD + L AG+ V +G A + V E L++ D +P +DG
Sbjct: 53 DRRLLLVEDDPTVAEVARNYLRNAGFLVDEVADGFQALESVAELVPDLVILDRKLPGIDG 112
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + V+ +T +A D L+KPF R+LV V +L
Sbjct: 113 TEVCRRLRSFTA-VPVLMLTALSATEDRIDGLESGADDYLTKPFSPRELVLRVQSILKR 170
>gi|228945599|ref|ZP_04107949.1| DNA-binding response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228814117|gb|EEM60388.1| DNA-binding response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 234
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 14 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 74 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|126654044|ref|ZP_01725875.1| response regulator ArlR [Bacillus sp. B14905]
gi|126589478|gb|EAZ83623.1| response regulator ArlR [Bacillus sp. B14905]
Length = 247
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + RF+ L GY+V G E F +LL D+++P ++GI
Sbjct: 25 KKILVVEDEKHIARFVELELQHEGYDVTVAFEGREGLSLATIEAFDVLLLDVMLPGINGI 84
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + ++ IT AV + KPF + +L+ + +L
Sbjct: 85 EICRRVRTQ-SQVPIILITARDAVMDRVAGLDAGADDYIVKPFAIEELLARIRTILRR 141
>gi|319653806|ref|ZP_08007901.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
gi|317394532|gb|EFV75275.1| hypothetical protein HMPREF1013_04520 [Bacillus sp. 2_A_57_CT2]
Length = 228
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L + V ++G K +E + L++ DI++P ++G
Sbjct: 2 KKILLIEDDISIAELQRDYLEINKFRVDIQHSGEEGLQKALQEHYDLIILDIMLPGVNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + ++ ++F++ ++KPF +LV V L
Sbjct: 62 EICKQIRAV-KNIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLER 118
>gi|300867627|ref|ZP_07112275.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
6506]
gi|300334388|emb|CBN57445.1| Two-component response regulator (fragment) [Oscillatoria sp. PCC
6506]
Length = 413
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD+ + L L + Y V +G + ++ + L+L D+V+P++DGI
Sbjct: 2 KVLLVEDDEYIAHALSTTLTEQHYTVDVAYDGQAGWEYAEAFTYDLILLDVVLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ ++ +T + A + + KPF +L + +L
Sbjct: 62 LCRQLRSRHTTTPILLLTSCDSSASKIEGLDAGADDYVVKPFDFLELSARIRAILRR 118
>gi|218963798|gb|ACL13561.1| CopR [Pseudomonas fluorescens]
Length = 231
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+AED+ + +L + L +AG+ V NG A E + LL+ D++MP +DG E
Sbjct: 2 RLLVAEDEPKIGIYLQQGLTEAGFNVDRFTNGKDALQHALSEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ V+F+T V L KPF +L+ V LL
Sbjct: 62 VLQKVRASGKNVPVLFLTARDRVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 118
>gi|256419719|ref|YP_003120372.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256034627|gb|ACU58171.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 235
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+++++ L L GYEV + +NG +A V+ E F L++ DI++PEMDGI +
Sbjct: 9 ILLVEDEENLQEALKLNLELEGYEVTAVDNGTAALKAVKNEYFDLIILDIMLPEMDGIAV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ ++F++ + A ++KPF+L +L+ V +L+ +KN
Sbjct: 69 CENIRIQNNEVPILFLSAKNSSADRVLGLKKGGDDYMTKPFNLEELLLRVEKLI-VKN 125
>gi|229018448|ref|ZP_04175310.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229024704|ref|ZP_04181143.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228736547|gb|EEL87103.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228742800|gb|EEL92938.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 226
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++D++ L+K L Y V C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEEDLQNILVKRLNAEYYSVDGCGNGEDALDYISMTTYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T A+ L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDAIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|229178308|ref|ZP_04305678.1| Two-component response regulator vanR [Bacillus cereus 172560W]
gi|228605187|gb|EEK62638.1| Two-component response regulator vanR [Bacillus cereus 172560W]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L + F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPITFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|296535791|ref|ZP_06897952.1| response regulator [Roseomonas cervicalis ATCC 49957]
gi|296263859|gb|EFH10323.1| response regulator [Roseomonas cervicalis ATCC 49957]
Length = 259
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD +MR + K L + G+ V NGA +D + P L+L D+++P G++
Sbjct: 26 HILVVEDDGEMRTLIAKLLRQNGFRVTGARNGAEMWDTMALSPVDLVLLDVMLPGQSGLD 85
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ ++ +T A L KPF +L+ + +L
Sbjct: 86 LCRTIRAR-SEVPIIMVTARGEEADRVVGLELGADDYLPKPFSRPELLARIRAVLRR 141
>gi|270295181|ref|ZP_06201382.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274428|gb|EFA20289.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 1303
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ D +FL ++L + Y V+ NG A + + +E L+++DI+MPEMDG+E
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ +T A+ + + ++KPF++ L +N+++ +
Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171
>gi|229550945|ref|ZP_04439670.1| response regulator [Lactobacillus rhamnosus LMS2-1]
gi|229315770|gb|EEN81743.1| response regulator [Lactobacillus rhamnosus LMS2-1]
Length = 258
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + L + GY V N +AYD ++ E F L+L+DI+MP++DG +
Sbjct: 37 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 96
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ DP + ++FIT +A + KP + +L+ + LL
Sbjct: 97 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRR 153
>gi|196042971|ref|ZP_03110210.1| regulatory protein VanR [Bacillus cereus 03BB108]
gi|229185367|ref|ZP_04312550.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|196026455|gb|EDX65123.1| regulatory protein VanR [Bacillus cereus 03BB108]
gi|228598100|gb|EEK55737.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
Length = 229
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD ++R+ + L GYE++ + A D +R L++ DI++P+MDG
Sbjct: 4 KEKILIVDDDIEIRKIISIYLRNEGYEIIDAPDAIEALDILRNTTVDLIILDIMLPKMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + E + ++F++ ++KPF+ +L+ + L
Sbjct: 64 IEACLKIREQY-QMPIIFLSAKDEDIDKIQGLMSGAEDYITKPFNPLELMARIKSQLRR 121
>gi|160891726|ref|ZP_02072729.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
gi|317478215|ref|ZP_07937381.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|156859133|gb|EDO52564.1| hypothetical protein BACUNI_04181 [Bacteroides uniformis ATCC 8492]
gi|316905608|gb|EFV27396.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 1303
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ D +FL ++L + Y V+ NG A + + +E L+++DI+MPEMDG+E
Sbjct: 1054 TILLVDDNYDFLKFLSESLARQ-YHVLKATNGKHALNVLEKEDIDLVVSDIMMPEMDGLE 1112
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ +T A+ + + ++KPF++ L +N+++ +
Sbjct: 1113 LCSTIKNDIRYSHIPIILLTAKASEEHQLEGLSVGADDYITKPFNMEVLKLRINKIIEM 1171
>gi|49480164|ref|YP_034830.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49331720|gb|AAT62366.1| probable response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 223
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|73540279|ref|YP_294799.1| two component transcriptional regulator [Ralstonia eutropha JMP134]
gi|72117692|gb|AAZ59955.1| two component transcriptional regulator, winged helix family
[Ralstonia eutropha JMP134]
Length = 243
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 9 ILVVDDDPELRDLLREYLTQQGFAVSVLHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L K
Sbjct: 69 LRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125
>gi|22299966|ref|NP_683213.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22296151|dbj|BAC09975.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + L L AGYEV +G + L+L D+++P++D
Sbjct: 1 MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R D+ ++ +T + + L+KPF L +++ V LL
Sbjct: 61 GFTICQRLRRDPRTQDIPILMLTALSQTHNKVEGFNAGADDYLTKPFELEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332976206|gb|EGK13070.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 227
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+++M L L + + V ++G A ++ F L + DI+MP +D
Sbjct: 1 MKPSILIVDDEEEMLSMLTLILEEE-FSVTPASDGVEAVKLLQNRVFDLCILDIMMPRLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + V+ ++ A ++KPF +LV V LL
Sbjct: 60 GMEVLHVLNREQNRIPVILLSARADTRDRVAGLEGGADDYITKPFEPAELVARVKSLLRR 119
>gi|301155678|emb|CBW15146.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Haemophilus parainfluenzae T3T1]
Length = 234
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL +DD ++ L + L G+EV NNG A DK+ L+L D++MP ++
Sbjct: 1 MS-KILLVDDDIELTDLLAEVLRLTGFEVEIANNGQEALDKLNSSH-QLVLLDVMMPVLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ + ++ VM +T L KPF+ R+LV + +L
Sbjct: 59 GIETLKKIRQ-TSNVPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILRR 117
>gi|228924359|ref|ZP_04087606.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835308|gb|EEM80702.1| hypothetical protein bthur0011_53100 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ ++R L K + + Y+V +G A + + L + D++MP++DGIE
Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ +T + ++KPF + ++V V L+
Sbjct: 71 VCRKLREKT-NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126
>gi|229132743|ref|ZP_04261589.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
gi|228650753|gb|EEL06742.1| Two-component response regulator vanR [Bacillus cereus BDRD-ST196]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G+ V S +NG A + + L + D++MP+MDGIEL
Sbjct: 16 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKYS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|229199377|ref|ZP_04326042.1| DNA-binding response regulator [Bacillus cereus m1293]
gi|228584091|gb|EEK42244.1| DNA-binding response regulator [Bacillus cereus m1293]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWSEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 118
>gi|196034428|ref|ZP_03101837.1| DNA-binding response regulator [Bacillus cereus W]
gi|196042110|ref|ZP_03109394.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218905762|ref|YP_002453596.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228917175|ref|ZP_04080732.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|301056045|ref|YP_003794256.1| response regulator [Bacillus anthracis CI]
gi|195992970|gb|EDX56929.1| DNA-binding response regulator [Bacillus cereus W]
gi|196027046|gb|EDX65669.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218539918|gb|ACK92316.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228842376|gb|EEM87467.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|300378214|gb|ADK07118.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 230
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|158521788|ref|YP_001529658.1| two component, sigma54 specific, Fis family transcriptional
regulator [Desulfococcus oleovorans Hxd3]
gi|158510614|gb|ABW67581.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfococcus oleovorans Hxd3]
Length = 465
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D+++MR L L + GY+V + NGA A + V ++PF +L DI MP MDG
Sbjct: 8 KKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL---- 117
+ TE PD V+ ++ + + ++ +SKPF +++ + +
Sbjct: 68 LAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASERE 127
Query: 118 -LTIKN 122
L +N
Sbjct: 128 RLKREN 133
>gi|83953654|ref|ZP_00962375.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. NAS-14.1]
gi|83841599|gb|EAP80768.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. NAS-14.1]
Length = 229
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ R L L G++V NG A V E L++ D +MP + GIE+
Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E ++ V+ ++ + + KP+ +R+L+ V L
Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125
>gi|34762634|ref|ZP_00143627.1| Two-component response regulator czcR [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|237741605|ref|ZP_04572086.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
gi|256844930|ref|ZP_05550388.1| phosphate regulon transcriptional regulatory protein PhoB
[Fusobacterium sp. 3_1_36A2]
gi|294785787|ref|ZP_06751075.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
gi|27887714|gb|EAA24790.1| Two-component response regulator czcR [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|229429253|gb|EEO39465.1| two-component response regulator czcR [Fusobacterium sp. 4_1_13]
gi|256718489|gb|EEU32044.1| phosphate regulon transcriptional regulatory protein PhoB
[Fusobacterium sp. 3_1_36A2]
gi|294487501|gb|EFG34863.1| DNA-binding response regulator [Fusobacterium sp. 3_1_27]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L K + V S +G A + L+L D+++P+M+G E
Sbjct: 2 KILVVEDEKDLNNIITKNLKKNNFSVDSVYDGEEALKYSDYGNYDLILLDVMLPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T A+ L KPF +L+ + ++ K
Sbjct: 62 VVKHLRANKNETAVLMLTARDAIEDKIKGLDLGADDYLIKPFDFGELLARIRAIIRRK 119
>gi|164520364|gb|ABY60237.1| PhoP [Listeria monocytogenes]
gi|164520372|gb|ABY60241.1| PhoP [Listeria monocytogenes]
gi|164520420|gb|ABY60265.1| PhoP [Listeria monocytogenes]
gi|164520426|gb|ABY60268.1| PhoP [Listeria monocytogenes]
gi|164520436|gb|ABY60273.1| PhoP [Listeria monocytogenes]
gi|164520438|gb|ABY60274.1| PhoP [Listeria monocytogenes]
gi|164520442|gb|ABY60276.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|52140690|ref|YP_086139.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|51974159|gb|AAU15709.1| DNA-binding response regulator [Bacillus cereus E33L]
Length = 229
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|68565392|sp|Q44929|GTCR_ANEMI RecName: Full=Response regulator gtcR
gi|468745|emb|CAA55264.1| gtcR [Brevibacillus brevis]
Length = 242
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D+ ++ L L + Y ++ +G A++ +R+ P L + DI+MP +D
Sbjct: 1 MSKTILIADDEPEIIELLKLFLERESYRIIEAYDGEQAWNYIRQHPVDLAIIDIMMPALD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L +R T L V+ ++ + +SKPF+ + V + L
Sbjct: 61 GFQLIKRLTNEYK-LPVIILSAKNRDSDKILGLGLGADDFISKPFNPLEAVARIQAQLRR 119
>gi|317500934|ref|ZP_07959144.1| two-component system response regulator [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089166|ref|ZP_08338069.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316897637|gb|EFV19698.1| two-component system response regulator [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405943|gb|EGG85469.1| hypothetical protein HMPREF1025_01652 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 226
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ + L L GY V + N A A DK+ ++L DI M M+G
Sbjct: 4 KYKILIVDDEQSILDMLKLQLEFEGYSVYTAGNAAEALDKL-SYSPDIVLLDINMDGMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L + ++F+T + + ++KPF + +L+ ++ L +
Sbjct: 63 LDLCVSIRD-FISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHLRRE 121
>gi|311695506|gb|ADP98379.1| two component transcriptional regulator, winged helix family
[marine bacterium HP15]
Length = 228
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDDD++R L + L G+ + NG + +++ DI++P++
Sbjct: 1 MQNRVLLVEDDDELRELLARYLTNQGFTIREAANGRDGLALALGQDCDIVVLDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R L V+ +T + KP + R+LV + LL
Sbjct: 61 GLEVLRELRAET-HLPVVLLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRR 119
>gi|299148439|ref|ZP_07041501.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298513200|gb|EFI37087.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1446
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1189 ILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L V LL +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQR 1306
>gi|255009234|ref|ZP_05281360.1| putative two component system response regulator [Bacteroides
fragilis 3_1_12]
gi|313146983|ref|ZP_07809176.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
gi|313135750|gb|EFR53110.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V N+G S ++ +R+E F LL+ DI+MP M+G+E
Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHTVSVANDGNSGWELIRQEVFDLLIIDIIMPGMNGLE 62
Query: 64 LARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L KPF ++L + +L
Sbjct: 63 LCRLYRRQYGYLVPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKAILRR 120
>gi|222055335|ref|YP_002537697.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
gi|221564624|gb|ACM20596.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
Length = 234
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
ILL ED+ + R + L V +G A ++V+ E F L++ D+++P +DG
Sbjct: 5 KPHILLVEDEIHLARGICFNLELENLRVSHVESGEEALERVKFERFDLIILDVMLPGIDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ELD + V+ +T + A L+KPF+L + + V +L
Sbjct: 65 FVVCKKVRELDARVPVLMLTARSDERDRIAGLAGGADDYLTKPFNLDEFLLRVKGMLRR 123
>gi|210614871|ref|ZP_03290370.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
gi|210150513|gb|EEA81522.1| hypothetical protein CLONEX_02584 [Clostridium nexile DSM 1787]
Length = 224
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 59/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ + + + L K Y V SC +G A D + P+ ++ DI+MP++DG+
Sbjct: 2 RILIAEDERDLNQIITERLKKEHYSVDSCFDGEEALDYLAAAPYDAVILDIMMPKLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R+ + + V+ +T +V L KPF +L+ V L+
Sbjct: 62 VLRKMRNKNENTPVLLLTAKDSVEDRVKGLDAGANDYLVKPFAFEELLARVRVLVR 117
>gi|160945777|ref|ZP_02093003.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
M21/2]
gi|158443508|gb|EDP20513.1| hypothetical protein FAEPRAM212_03310 [Faecalibacterium prausnitzii
M21/2]
Length = 231
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++IL+ +D+ D+ + +AG+ ++++ ++G +A E+ +++ D++MP
Sbjct: 1 MNDKRILVVDDETDLLEMVKSIFTRAGFTQILTASSGEAALKMCEEQEPDMMILDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + + + V+ +T L KPF ++L+ V +L
Sbjct: 61 MDGFAALKELRK-TSKIPVLMLTARGEAEDKFVGFENGADDYLLKPFLPKELLFRVQAIL 119
Query: 119 TI 120
Sbjct: 120 KR 121
>gi|158315649|ref|YP_001508157.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158111054|gb|ABW13251.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 235
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++ L + L +AGY V ++G A + E + ++ D+++P +DG E
Sbjct: 2 RVLVVEDEERTADLLRRGLTEAGYAVDLVHDGTDAVWQAGEISYDAIVLDLMLPGLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ +T V L+KPF +L + L+
Sbjct: 62 VCRRLRAARRWSPILMLTARGDVDDRIHGLDAGADDYLAKPFSFGELTARLRALIRR 118
>gi|153873132|ref|ZP_02001814.1| signal transduction histidine kinase [Beggiatoa sp. PS]
gi|152070402|gb|EDN68186.1| signal transduction histidine kinase [Beggiatoa sp. PS]
Length = 480
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ R L L Y+++ +G A K E L+L D++MP MDG E
Sbjct: 6 RLLIVDDEKRGREALKILLASENYQLILAASGEEALLKAPELVPDLILLDVMMPGMDGFE 65
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +T + + KPF +L+ V ++ +
Sbjct: 66 VCQHIRAHPQLGEVPIIMLTAMSDRKTRLRGIEAGADDFIIKPFDRVELLARVRTIIRL 124
>gi|90426389|ref|YP_534759.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90108403|gb|ABD90440.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 234
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MSARILVVEDEEALTTLLRYNLDAEGYDVETVARGDDADTRLKERIPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|301056320|ref|YP_003794531.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|300378489|gb|ADK07393.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 229
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|269139358|ref|YP_003296059.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda
EIB202]
gi|267985019|gb|ACY84848.1| acetoacetate metabolism regulatory protein [Edwardsiella tarda
EIB202]
gi|304559263|gb|ADM41927.1| Acetoacetate metabolism regulatory protein AtoC [Edwardsiella tarda
FL6-60]
Length = 461
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 62/118 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L AL G+E + ++GA A + + P ++L DI MP M+GI+
Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETHAASHGAEALQRFADAPPDVVLMDIRMPTMNGID 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P V+ +T +A V ++ + KPF L +L + R L ++
Sbjct: 66 ALKVMRARQPRTPVILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123
>gi|116620224|ref|YP_822380.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116223386|gb|ABJ82095.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 231
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILLAEDD + L L GY V S +G SA + + + L+L D+++P
Sbjct: 1 MTPRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E + + ++ +T V L+KPF + +L+ + LL
Sbjct: 61 GFDVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRR 120
>gi|296133006|ref|YP_003640253.1| response regulator receiver modulated diguanylate cyclase
[Thermincola sp. JR]
gi|296031584|gb|ADG82352.1| response regulator receiver modulated diguanylate cyclase
[Thermincola potens JR]
Length = 314
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +DD M R + L K G+ V + +SA + + + L+L D+V+P+M+G
Sbjct: 7 QRILVIDDDKFMVRIIKDCLEKVGFIVYGAEDFSSAMELIYQMTPDLILLDVVLPKMNGF 66
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++ IT A ++KPF +LV V L
Sbjct: 67 EICRLLRNDTRTSHVPIIMITSKAMTEDKVAGLEAGADDYITKPFDPLELVARVKTHLRR 126
>gi|312115104|ref|YP_004012700.1| two component transcriptional regulator PhoB, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
gi|311220233|gb|ADP71601.1| two component transcriptional regulator PhoB, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
Length = 236
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED++ + L L G+ V G A + EEP L++ D ++P +
Sbjct: 1 MNAKILIVEDEEALALLLQYNLEAEGFSVSISQRGDEAEVAIGEEPPDLIILDWMLPGLS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR + + ++ +T + KPF + +L+ V +L
Sbjct: 61 GIELCRRLRAGKTARTIPILLLTARGEETDRIRGLTVGADDYVVKPFSVPELLARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229525275|ref|ZP_04414680.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae bv. albensis VL426]
gi|229338856|gb|EEO03873.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio
cholerae bv. albensis VL426]
Length = 619
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 215 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAMKREKPELVLLDIMMPGMSGYQVC 274
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 275 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 330
>gi|212703362|ref|ZP_03311490.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
gi|212673208|gb|EEB33691.1| hypothetical protein DESPIG_01405 [Desulfovibrio piger ATCC 29098]
Length = 234
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED++D+ L L GYE+ NG + + F L++ DI++P +DGI L
Sbjct: 6 VLLVEDNEDILANLYAYLEPLGYELDCARNGRTGLEMAASGQFDLVVLDIMLPGLDGISL 65
Query: 65 ARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + V+ +T VA L KPF LR+L + LL
Sbjct: 66 CRALREEHGVQVPVIMLTARDTVADRVLGLDAGADDYLVKPFALRELEARIRALLRR 122
>gi|254461523|ref|ZP_05074939.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacterales bacterium HTCC2083]
gi|206678112|gb|EDZ42599.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacteraceae bacterium HTCC2083]
Length = 227
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ R L L GY V+ +G RE L++ D ++PEM GIE+
Sbjct: 6 ILVVEDEAAQREVLSYNLEAEGYRVLQGESGDEGLLLARENVPDLIVLDWMLPEMSGIEV 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ ++ + ++KP+ +++L+ V L
Sbjct: 66 CRQVKSDTTTKAIPIIMLSARSEDVDKVRGLETGADDYVAKPYSVKELMARVKAQLRR 123
>gi|162450321|ref|YP_001612688.1| two-component system response regulator [Sorangium cellulosum 'So
ce 56']
gi|161160903|emb|CAN92208.1| two-component system response regulator [Sorangium cellulosum 'So
ce 56']
Length = 228
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD + L L + G+ V +GA + F +L D++MP MD
Sbjct: 1 MALRLLLIDDDTRLHALLASYLEQNGFAVTVACDGARGLLALAAGTFDAVLLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + ++ +T A ++KPF R+L+ + +L
Sbjct: 61 GIEVVRRIRQK-SSMPILMLTARGDEADRVVGLEIGADDYIAKPFSPRELLARLRAVLRR 119
>gi|113866613|ref|YP_725102.1| response regulator [Ralstonia eutropha H16]
gi|113525389|emb|CAJ91734.1| response regulator, OmpR-family [Ralstonia eutropha H16]
Length = 247
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 9 ILVVDDDPELRDLLREYLTQQGFAVSVMHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L K
Sbjct: 69 LRNLRAKNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125
>gi|332359136|gb|EGJ36957.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ + GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTREGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|260578371|ref|ZP_05846285.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
gi|258603393|gb|EEW16656.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
Length = 235
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G++V + +NG A + D++MP MDG
Sbjct: 10 KVLVVDDEANISDLLKVSLKFQGFDVETADNGQDALALAATYKPDAFILDVMMPGMDGFT 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D +F+T V ++KPF L +++ + +L
Sbjct: 70 LLNKLRAAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|257413909|ref|ZP_04744629.2| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
gi|257201844|gb|EEV00129.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+D +R + K GYE+ ++G A + R+E F L++ D++MPE+DG
Sbjct: 12 ERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ V+ ++ + KPF R+L+ V +++ N
Sbjct: 72 STCREIRK-FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNN 130
>gi|225375459|ref|ZP_03752680.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
16841]
gi|225212656|gb|EEG95010.1| hypothetical protein ROSEINA2194_01084 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDKELCTLIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKEYS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|223938485|ref|ZP_03630378.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223892904|gb|EEF59372.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 237
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ D + L AGYEV++ +G A +K R +L++ D+++PE+DG+E
Sbjct: 14 KILVVDDEPDAIELIKFNLKSAGYEVITAADGEEALNKARSLLPNLIILDLMIPEVDGLE 73
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + ++ +T AA ++KPF R+LV V RLL
Sbjct: 74 VCKILRRDARVSGIPIIMLTAKAAEIDRVLGLELGADDYVTKPFSPRELVLRVKRLLR 131
>gi|186681324|ref|YP_001864520.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186463776|gb|ACC79577.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 379
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D D + L + GY + + NG SA +++ P L+L D++MP+MDG
Sbjct: 8 SGKILVVDDSPDNVFLIKTILEEEGYTISTAENGISALAELKASPCDLVLLDLMMPDMDG 67
Query: 62 IELARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ + +L + ++ IT A + KP + +L+ V LL
Sbjct: 68 YEVTKHIRGDMKLPQYIPILLITAHDAP-NVAHGLDLGADDFIRKPVTVDELLARVRSLL 126
Query: 119 TIKN 122
+K+
Sbjct: 127 RLKH 130
>gi|254422502|ref|ZP_05036220.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196189991|gb|EDX84955.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 676
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L K L Y V G + V + L++ D+++PE+DGI+
Sbjct: 2 RILLVEDDESVAKILHKVLTDEHYIVDVAYTGHIGWQLVSSFNYDLIILDVLLPELDGIK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + L V+F+T + ++KPF L +L+ V LL
Sbjct: 62 FCQQLRAQEYTLPVLFVTALDDSSEKIAGLNAGADDYITKPFELEELLARVRALLRR 118
Score = 95.6 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL +DD + + L L Y++V+ + + +++E LLL DI MP+ GI
Sbjct: 539 RKILAVDDDSQLLQTLKTRLALENYQIVTLDKPLEFWKTLQDENPDLLLLDISMPQFTGI 598
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + L ++F T A L + ++ K L+ + +
Sbjct: 599 ELCQTVRRSPAWRHLPIVFFTAHAEPHLQQAAFKAGGDNLIEKSLSDAQLLAHLEHQMKR 658
>gi|183601477|ref|ZP_02962847.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|241191023|ref|YP_002968417.1| putative response regulator [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196429|ref|YP_002969984.1| putative response regulator [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|183219083|gb|EDT89724.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|240249415|gb|ACS46355.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250983|gb|ACS47922.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794012|gb|ADG33547.1| Putative response regulator [Bifidobacterium animalis subsp. lactis
V9]
Length = 239
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ + + + L G+ +GA+A + L++ D+++P MDGI
Sbjct: 12 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A +SKPF +R+LV V LL
Sbjct: 72 EATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARVRALLRR 128
>gi|148265760|ref|YP_001232466.1| two component, sigma-54 specific, Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146399260|gb|ABQ27893.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 454
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GYEVV+ +G + E +L++TD+ MP +
Sbjct: 1 MAAKILIIDDDTSLRRVLEYNLQEEGYEVVTAADGEAGLALFAECSPALVVTDLKMPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ E P V+ IT F A+ ++ ++KPF+ L V + L +
Sbjct: 61 GFQVLATIKERSPATLVIVITAFGAIDTAIEAMKLGAYDYITKPFNRDQLKLVVKKALEL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|47570808|ref|ZP_00241364.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
gi|47552525|gb|EAL11020.1| DNA-binding response regulator VicR [Bacillus cereus G9241]
Length = 162
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|320332983|ref|YP_004169694.1| winged helix family two component transcriptional regulator
[Deinococcus maricopensis DSM 21211]
gi|319754272|gb|ADV66029.1| two component transcriptional regulator, winged helix family
[Deinococcus maricopensis DSM 21211]
Length = 249
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +R +L L G++V S G + E L++ D+++P DG
Sbjct: 31 RILIVEDDPGIREYLSLGLRYEGFDVRSAATGGEGLTQYAEHGADLVVLDVMLPGPDGFA 90
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D + V+ +T +V L+KPF +LV + +L
Sbjct: 91 FLRDLRARDA-VPVVMLTARDSVDDRILGLESGADDYLTKPFAFGELVARIRTVLRR 146
>gi|297157290|gb|ADI07002.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 246
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + + L G++V + +G +A D + LL+ D+++P DG+
Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAQAWQPDLLVLDVMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQATRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|296501330|ref|YP_003663030.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|296322382|gb|ADH05310.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|258627290|ref|ZP_05722076.1| sensory box sensor histidine kinase/response regulator [Vibrio
mimicus VM603]
gi|258580473|gb|EEW05436.1| sensory box sensor histidine kinase/response regulator [Vibrio
mimicus VM603]
Length = 769
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E LLL DI+MP M G ++
Sbjct: 365 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHEVLEAIQREKPELLLLDIMMPGMSGYQVC 424
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 425 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 480
>gi|260589379|ref|ZP_05855292.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
20583]
gi|331082774|ref|ZP_08331897.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540460|gb|EEX21029.1| subtilin biosynthesis regulatory protein SpaR [Blautia hansenii DSM
20583]
gi|330400393|gb|EGG80035.1| hypothetical protein HMPREF0992_00821 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +DD ++ + L K + Y V++ NG A +K++ ++L DI MP+MD
Sbjct: 1 MGYKILLVDDDTELVKMLSKYFERKKYRVITAQNGKEAIEKLQT-APDIILLDINMPQMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++F+T + + KPF L++L + L
Sbjct: 60 GLEVCRKIRDKIS-CPILFLTARVEEEDRVNGLLSGGDDYILKPFSLKELDARITAHLKR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|297200104|ref|ZP_06917501.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297147578|gb|EFH28677.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|194288688|ref|YP_002004595.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
gi|193222523|emb|CAQ68526.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
LMG 19424]
Length = 247
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 9 ILVVDDDPELRDLLREYLTQQGFAVSVMHDGDGLQARLERERPALIVLDLMMPKVDGLTA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L K
Sbjct: 69 LRNLRARNDDIPVILLTARSDEIDRIVGLEIGADDYLGKPFSPRELLARINAVLRRK 125
>gi|160884768|ref|ZP_02065771.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
gi|156109803|gb|EDO11548.1| hypothetical protein BACOVA_02757 [Bacteroides ovatus ATCC 8483]
Length = 1320
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +D+ ++ +L K LGK+ + +++ NG A ++++ SL+++D++MPE+DGI
Sbjct: 1069 KTILLVDDNPEILNYLKKELGKS-FNILTATNGKEALGMLQQQNISLVVSDVMMPEIDGI 1127
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL +R L ++ +T A + + KPF + L + +L
Sbjct: 1128 ELCKRIKTDHNLSHLPIILLTAKAMNLYIEEGFQAGADDYIVKPFKVSTLKIRIKNILNR 1187
Query: 121 K 121
+
Sbjct: 1188 Q 1188
>gi|152970359|ref|YP_001335468.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206578894|ref|YP_002238379.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
gi|288935358|ref|YP_003439417.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|290509408|ref|ZP_06548779.1| two-component system, OmpR family, response regulator [Klebsiella
sp. 1_1_55]
gi|150955208|gb|ABR77238.1| putative transcriptional regulatory protein, C-terminal [Klebsiella
pneumoniae subsp. pneumoniae MGH 78578]
gi|206567952|gb|ACI09728.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
gi|288890067|gb|ADC58385.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|289778802|gb|EFD86799.1| two-component system, OmpR family, response regulator [Klebsiella
sp. 1_1_55]
Length = 246
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R ++ L K+GY NG + + ++ L++ DI+MP DG+
Sbjct: 6 HILVVDDDRDIRELIVDYLEKSGYRASGAANGKAMWSVLKNHQIDLIVLDIMMPGEDGLT 65
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ V+ +T + L KPF R+L+ + +L
Sbjct: 66 LCRQLRANPQQDIPVLMLTARTDDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123
>gi|154482555|ref|ZP_02025003.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
27560]
gi|149736580|gb|EDM52466.1| hypothetical protein EUBVEN_00222 [Eubacterium ventriosum ATCC
27560]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L +L + GYEV +G A DK +E + ++L D+++P + G E+
Sbjct: 4 LVVDDEKLIVKGLKFSLEQEGYEVDCAYDGQEAVDKAKETEYDIVLLDLMLPILTGYEVC 63
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E D+ ++ +T ++KPF++ ++ + ++
Sbjct: 64 QQIRE-FSDMPIIMLTAKGDDMDKILGLEYGADDYITKPFNILEVKARIKAIIRR 117
>gi|197116643|ref|YP_002137070.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197086003|gb|ACH37274.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + YEV + +G E+PF L++ D ++P+ DG+
Sbjct: 2 RILVVEDEKKVASFIKRGLEEEQYEVHTAADGEEGLKLALEKPFDLIVLDWMLPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T +V + L+KPF +L+ V L+
Sbjct: 62 VLKELRERKNLTPILMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALMRR 118
>gi|326938289|gb|AEA14185.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|259047938|ref|ZP_05738339.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
gi|259035358|gb|EEW36613.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
Length = 227
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ L L Y V ++G A P+ L+L D++MP+ GIE
Sbjct: 2 RILVAEDEIDLAEALKMMLEMQKYSVEMVHDGEDALFYAESTPYDLILLDVMMPKKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R V+ +T + + L+KPF +L+ V LL N
Sbjct: 62 VVRELRSNGIHTPVLMLTAKSQLEDKVTGLEEGADDYLTKPFEGAELLARVKSLLRRPN 120
>gi|253999818|ref|YP_003051881.1| winged helix family two component transcriptional regulator
[Methylovorus sp. SIP3-4]
gi|313201791|ref|YP_004040449.1| winged helix family two component transcriptional regulator
[Methylovorus sp. MP688]
gi|253986497|gb|ACT51354.1| two component transcriptional regulator, winged helix family
[Methylovorus sp. SIP3-4]
gi|312441107|gb|ADQ85213.1| two component transcriptional regulator, winged helix family
[Methylovorus sp. MP688]
Length = 245
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD MR L + L + G+ V + ++ + E LL+ D+++P DG+
Sbjct: 9 KKILMVDDDLRMRELLQRYLSEQGFSVKTVSDSTEMNTVLSSEHIDLLVLDLMLPSEDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T L KPF+ R+L+ +N ++
Sbjct: 69 AICRRLRAAGSTMPIIMLTARGDEVDRIIGLEMGADDYLPKPFNPRELLARINAVMRR 126
>gi|165918289|ref|ZP_02218375.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
gi|165918149|gb|EDR36753.1| transcriptional regulatory protein [Coxiella burnetii RSA 334]
Length = 245
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L K L + G+E +G+ + ++ L++ DI+MP DG+
Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +T + LSKPF+ R+L+ V +L
Sbjct: 66 LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>gi|49481182|ref|YP_036122.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|49332738|gb|AAT63384.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
Length = 254
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G+++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQIYEAIDGLDALQKMNEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-EIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|296271045|ref|YP_003653677.1| winged helix family two component transcriptional regulator
[Thermobispora bispora DSM 43833]
gi|296093832|gb|ADG89784.1| two component transcriptional regulator, winged helix family
[Thermobispora bispora DSM 43833]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD +R L AL + G+ V SC G A D VR +++ D+++P +DGIE+
Sbjct: 4 ILLVEDDPSVRTGLELALTRQGHSVTSCATGEEALDHVRTRRPEIVILDVMLPGIDGIEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++D L V+ +T + KP R L + +L
Sbjct: 64 CRRIRKIDS-LPVILLTALGDDLDVVVGLEAGADDYVVKPVQPRVLDARIRAILRR 118
>gi|228939121|ref|ZP_04101716.1| DNA-binding response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228820544|gb|EEM66574.1| DNA-binding response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326939698|gb|AEA15594.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ + +++ DI+MP MDG +
Sbjct: 13 KILIVDDDPHIRELVSVFLEREGFQTYEAIDGVDALRKMDDVKVDMVILDIMMPNMDGFD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+ +T + L KPF +LV V LL
Sbjct: 73 VCFELRKYY-DIPVLMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|218134085|ref|ZP_03462889.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
43243]
gi|217991460|gb|EEC57466.1| hypothetical protein BACPEC_01975 [Bacteroides pectinophilus ATCC
43243]
Length = 240
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + RFL L GY +NG S + + L+L D+++PE++
Sbjct: 1 MAATILIVEDEEQIARFLELELMHEGYTTCKADNGRSGLETAQSGECDLVLLDVMLPELN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR +L V+ +T AV ++KPF + +L+ + R L
Sbjct: 61 GLEVLRRLR-RTSNLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRRALKK 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|153216364|ref|ZP_01950429.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
gi|124114317|gb|EAY33137.1| sensory box sensor histidine kinase/response regulator [Vibrio
cholerae 1587]
Length = 773
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + ++ E L+L DI+MP M G ++
Sbjct: 369 LVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQVC 428
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 429 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 484
>gi|120435017|ref|YP_860703.1| two-component system response regulator [Gramella forsetii KT0803]
gi|117577167|emb|CAL65636.1| two-component system response regulator [Gramella forsetii KT0803]
Length = 240
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L YEV NG ++K +++ F L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLAMNDYEVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124
>gi|21230432|ref|NP_636349.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769574|ref|YP_244336.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992783|ref|YP_001904793.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. B100]
gi|21111993|gb|AAM40273.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574906|gb|AAY50316.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734543|emb|CAP52753.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR + L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|56420225|ref|YP_147543.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|56380067|dbj|BAD75975.1| two-component response regulator [Geobacillus kaustophilus HTA426]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D++ M L L GY V +GA A D +R L+L D++MPE+DG E
Sbjct: 3 TLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ +M +T A ++KPF +L+ + +L
Sbjct: 63 TCRRIRS-FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR 118
>gi|47565593|ref|ZP_00236634.1| response regulator DrrA [Bacillus cereus G9241]
gi|47557583|gb|EAL15910.1| response regulator DrrA [Bacillus cereus G9241]
Length = 232
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|317970310|ref|ZP_07971700.1| two component transcriptional regulator [Synechococcus sp. CB0205]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDDD +R + +AL G+ V NG SA+D+++ +PF L++ D+++P ++G++
Sbjct: 12 RLLVVEDDDTIRETVCEALELEGFSVTPATNGQSAWDRLKRDPFELIVLDVMLPGINGLD 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ EL V+ ++ L KPF +R+LV LL
Sbjct: 72 LCRKLIELPQRPLVLMVSARDTETDRVLGLELGADDYLVKPFGIRELVARCRALLRR 128
>gi|304438293|ref|ZP_07398234.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304368659|gb|EFM22343.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + RFL L G+ NG AY+++ +E F ++L D+++P MDGIE
Sbjct: 6 HVLIVEDETRIARFLQMELEHEGFTAEIEGNGTRAYERIIQENFDIILLDVMLPGMDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + ++ ++ +T AV + ++KPF + +L+ + L ++
Sbjct: 66 ICRRVRTV-SNVPIIMLTARDAVEDRVEGLDIGADDYITKPFAVPELIARIRNALRRRD 123
>gi|229084861|ref|ZP_04217116.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
gi|228698441|gb|EEL51171.1| Two-component response regulator vanR [Bacillus cereus Rock3-44]
Length = 232
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q+ IL+ +DD D+ + + L + GY+V+ +G A + L+L D++MP M
Sbjct: 1 MKQQSILIVDDDADIVQLIALHLKQEGYKVIKAYDGVEAIYMLDTNDIQLVLLDVMMPTM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR E ++ VMF++ +A + ++KPF + +LV V L
Sbjct: 61 DGVEVCRRIREKF-NIPVMFLSAKSADIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|229093928|ref|ZP_04225019.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228689410|gb|EEL43224.1| Two-component response regulator [Bacillus cereus Rock3-42]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229009996|ref|ZP_04167211.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229131506|ref|ZP_04260397.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|229165510|ref|ZP_04293290.1| Two-component response regulator [Bacillus cereus AH621]
gi|228617958|gb|EEK75003.1| Two-component response regulator [Bacillus cereus AH621]
gi|228651953|gb|EEL07899.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228751278|gb|EEM01089.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 5 NMRLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|47664|emb|CAA30934.1| unnamed protein product [Salmonella enterica subsp. enterica
serovar Typhimurium]
gi|587570|emb|CAA55076.1| ompR [Salmonella enterica subsp. enterica serovar Typhi]
Length = 239
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRPVLRRQ 123
>gi|89094868|ref|ZP_01167800.1| two-component response regulator [Oceanospirillum sp. MED92]
gi|89080825|gb|EAR60065.1| two-component response regulator [Oceanospirillum sp. MED92]
Length = 454
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ EDD+++R L L AG++ + + A + E +++TD+ MP MD
Sbjct: 1 MSNRILIVEDDNELREALCDTLELAGFDYIEAEDAEKALALLTEHQVDMVVTDVNMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G EL + + P L VM IT F V+ ++ L KPF L++ V R
Sbjct: 61 GHELLSQIRQSYPGLPVMLITAFGQVSKAVEAIKAGAVDYLMKPFDSDALISSVRR 116
>gi|302337571|ref|YP_003802777.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301634756|gb|ADK80183.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 236
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++I + +D++ + L A + G+E+ ++GA+A+ + L++ DI+MP+
Sbjct: 1 MNEAKRIAIVDDEEALTATLAFAFRREGFEIELFHDGAAAWQHFSQRLPHLIVLDIMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ L + + ++F++ LSKPF +R+L+ V +L
Sbjct: 61 MDGLTLCKLLRSEGMQVPIIFLSSRDDEIDRLLGFESGGDDYLSKPFSVRELLARVRAVL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSS 124
>gi|256544847|ref|ZP_05472219.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
gi|256399736|gb|EEU13341.1| DNA-binding response regulator [Anaerococcus vaginalis ATCC 51170]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ D+ + L K YEV C G A + + SL++ D+++P M+
Sbjct: 1 MS-RILIVEDELDLANLIKDYLEKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + + ++ ++ ++KPF R+L+ VN L
Sbjct: 60 GYEICQNIR-IKSTIPILILSAKIDEFDKVKGLDLGADDYITKPFRPRELLARVNAQLRR 118
>gi|160886917|ref|ZP_02067920.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
gi|156107328|gb|EDO09073.1| hypothetical protein BACOVA_04931 [Bacteroides ovatus ATCC 8483]
Length = 1446
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1189 ILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L V LL +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQR 1306
>gi|153206919|ref|ZP_01945737.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
Q177']
gi|212219514|ref|YP_002306301.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
gi|120576992|gb|EAX33616.1| transcriptional regulatory protein [Coxiella burnetii 'MSU Goat
Q177']
gi|212013776|gb|ACJ21156.1| two-component response regulator [Coxiella burnetii CbuK_Q154]
Length = 245
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L K L + G+E +G+ + ++ L++ DI+MP DG+
Sbjct: 6 HILIVDDDSDIRDLLGKFLRRHGFEASLAKDGSEMQTILLKQAVDLVILDIMMPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + ++ +T + LSKPF+ R+L+ V +L
Sbjct: 66 LCRQMRA-NSTIPILMLTAISEEVDRILGLEMGADDYLSKPFNPRELLARVRAILRR 121
>gi|300867000|ref|ZP_07111670.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300334983|emb|CBN56836.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 1290
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+LA+D+ DMR ++ + L + YEV + +GA+A +R + L+LTD++MPE+DG E
Sbjct: 649 KIVLADDNADMRNYVKRLLSQQ-YEVEAVKDGAAALAAIRGQLPDLVLTDVMMPEVDGFE 707
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R +L ++ ++ A + L KPF R+L+ V L +
Sbjct: 708 LLRELRANPQTKELPIILLSARAGEESRIEGLEAGADDYLIKPFSARELLARVEANLKM 766
Score = 81.3 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP- 73
R F++ + + G ++ + A + + +LL+DI MPE+DG L ++ P
Sbjct: 1179 REFIVFLIEQYGGSAIAVASANEALVTLTQFQPDVLLSDIGMPEVDGYMLIQQVRATPPA 1238
Query: 74 ---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+ + +T +A + + + + KP LV +
Sbjct: 1239 QGGQIPAIALTAYAGEIDYQHAMSVGFQRHIPKPVEPTKLVEVI 1282
>gi|289664195|ref|ZP_06485776.1| two-component system regulatory protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668785|ref|ZP_06489860.1| two-component system regulatory protein [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|325918854|ref|ZP_08180934.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas vesicatoria ATCC 35937]
gi|325534945|gb|EGD06861.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas vesicatoria ATCC 35937]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|317130175|ref|YP_004096457.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315475123|gb|ADU31726.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ +MR+ L + +++ +NG A+ KV+E + L++ DI+MPE+D
Sbjct: 1 MEAKILLVDDEQEMRKLLKVCFSASPFQLDEASNGDEAFLKVQENNYDLIILDIMMPEID 60
Query: 61 GIELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL ELD ++ V+ +T + + KPF ++LV V +L
Sbjct: 61 GFELLNMLRVELDTEIPVILLTALGDTERVVEGLKRGADDYVVKPFEPKELVARVESVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|282895633|ref|ZP_06303758.1| Multi-component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
gi|281199327|gb|EFA74192.1| Multi-component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
Length = 1329
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + L L Y V N+G +A+D V + L+L DIV+P++DGI
Sbjct: 2 KILVVEDDALIACTLSNFLTYQNYAVEVANDGKTAWDLVETYEYDLILLDIVLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + ++ +TG + + KP +LV V LL
Sbjct: 62 LCKKIRSSGRRVPILLLTGRDSSHDKAIGLDAGADDYVVKPCDEEELVARVRALLRR 118
Score = 113 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD L L G E+V+ N + + +L+ DI MP M GIE
Sbjct: 383 KILVVDDDLKTLELLQVLLTPWGLEIVTLNYPEQFWSTWEKIHPDMLILDIEMPGMSGIE 442
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D ++ ++F+T + + + +SKP + +LVN + L
Sbjct: 443 LCKMIRSHDQGREVPILFLTVHSNAEIVNQVFSVGADDFVSKPIIISELVNRILNRLER 501
Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD R+ L L + GY V++ ++G A + + ++L D+VMP M+G E
Sbjct: 1076 VLVCDDDPITRQELKNLLLQGGYRVLTVDSGDQAIAQAVIQHPDVILLDLVMPGMNGWET 1135
Query: 65 ARRATE--LDPDLKVMFITGFAAV------ALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ D+ ++ + + + + ++ + K A LSKP DL+N + +
Sbjct: 1136 MAGLKKCSDTKDIPIVICSVYKSSQNNPNRQEDTNAESVKFADWLSKPVEETDLLNSLRK 1195
Query: 117 L 117
+
Sbjct: 1196 V 1196
Score = 66.3 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD D+ L + E G A ++ LL+ D+++PE DG
Sbjct: 1205 KILIIEDDHDLADLLATLFDRHDIETFIAKTGREAIHLSQKVNPDLLILDLILPEADGFT 1264
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRLLTI 120
+ + D + V+ + + + +K +++ V LL
Sbjct: 1265 VVDWLKQHDQLFSIPVVVYSAKDLDDSERHRLKLGHTEFFTKGRVTIQEFEQRVMDLLQR 1324
>gi|237721203|ref|ZP_04551684.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448999|gb|EEO54790.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1446
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1189 ILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L V LL +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQR 1306
>gi|218232702|ref|YP_002366911.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218160659|gb|ACK60651.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 227
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A +K ++L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFGNGNWNLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRIRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|119715834|ref|YP_922799.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536495|gb|ABL81112.1| response regulator receiver [Nocardioides sp. JS614]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L L G+ V +G A E + ++L D+++P ++G E
Sbjct: 2 RVLVVEDEARLAASLKAGLEAEGFAVDVAADGGEALWYAEETSYDVILLDVMLPVLNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ +T + ++KPF L+ + L+
Sbjct: 62 VCRRLREREVWTPILMLTARDEELDEIEGLDQGADDYVTKPFSFDILLARIRSLVRR 118
>gi|328463725|gb|EGF35301.1| two-component response regulator [Lactobacillus rhamnosus MTCC
5462]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + L + GY V N +AY+ ++ E F L+L+DI+MP++DG +
Sbjct: 3 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYELLQSEQFDLVLSDIMMPQVDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ DP + ++FIT +A + KP + +L+ + LL
Sbjct: 63 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRR 119
>gi|293401400|ref|ZP_06645543.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305038|gb|EFE46284.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 238
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ +R + L GY+V+ NG D + L + DI+MP MD
Sbjct: 1 MEHTVLVVEDEQGIREAIAIYLKNQGYQVLLAENGKEGLDLIHTNDVHLAIVDIMMPIMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + D V+F++ + + ++KPF +L+ V L
Sbjct: 61 GITMTMELRKNY-DFPVIFLSAKSEDIDKINGLNIGADDYVTKPFGSMELLARVRSQLRR 119
>gi|268590467|ref|ZP_06124688.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
gi|291314147|gb|EFE54600.1| DNA-binding response regulator TctD [Providencia rettgeri DSM 1131]
Length = 222
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED D++ +L KAL +G+ V ++GA A ++ E + L++ D+ +P M G+E
Sbjct: 2 RILLVEDHDELSLWLQKALSSSGFAVDLASDGAIADQLLQTERYELVVLDVSLPRMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + VA L+KPF + +L + LL
Sbjct: 62 VLAQMRKRHQETPVLLLTANSDVADRVQGLNAGADDYLTKPFDIAELEARLRALLRR 118
>gi|168185446|ref|ZP_02620081.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
gi|169296251|gb|EDS78384.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
Length = 232
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q +L+ +DD ++R + L G +V +G A ++E+ L+L DI+MP+M
Sbjct: 1 MSQNNVLVVDDDKEIREAIKIYLKNEGIKVFEAKDGIDALMLLQEQEIHLILMDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI+ + E D+ ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIKATFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|291445133|ref|ZP_06584523.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291348080|gb|EFE74984.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 64 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 122
>gi|218440687|ref|YP_002379016.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
gi|218173415|gb|ACK72148.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
Length = 124
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D++ + L L K GY+V + +G +A ++E +L+ D+++PEMDGIE
Sbjct: 3 HILLIDDEEPLLASLSFYLIKEGYKVTTAADGLTALKVIQENMPDILILDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D+ ++ +T A ++KPF R+L+ + +L
Sbjct: 63 LFWRIRA-FSDVPILMLTAKDHEADKVWGLKSGADDYVTKPFSTRELIARIEAILRR 118
>gi|17232561|ref|NP_489109.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17134207|dbj|BAB76768.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 245
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD R + L +GY V++ N+G A V L++TDIVMP M+
Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEAYHPDLIVTDIVMPRMN 78
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL RR + P L V+ +T L KPF L +L + LL
Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 138
Query: 119 TI 120
Sbjct: 139 ER 140
>gi|148262577|ref|YP_001229283.1| two component, sigma-54 specific, Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146396077|gb|ABQ24710.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 456
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ +R L + L K GYEV + NG A VREE L+L DI +P +
Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLVREEQPDLVLLDIQLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ + E D D+ V+ +T + ++ ++KPF+L +L + + L
Sbjct: 61 GGLEVLEKVKEFDEDIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALE 120
>gi|168184914|ref|ZP_02619578.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|182672034|gb|EDT83995.1| DNA-binding response regulator [Clostridium botulinum Bf]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MLEKILIVDDEDDIVSFIKDYFQDQGYSVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQICQKIRDKVS-CPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|17229456|ref|NP_486004.1| two-component system response regulator [Nostoc sp. PCC 7120]
gi|17131054|dbj|BAB73663.1| two-component system response regulator [Nostoc sp. PCC 7120]
Length = 236
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILL +D+ ++ L + L + GY V + G S + + LL+ D ++P G
Sbjct: 6 SMRILLVDDEVELTVPLSRVLTREGYTVEAAYEGKSGSEMATVGNYDLLILDWMLPGKTG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + V+F+T + L KPF LR+L+ V LL
Sbjct: 66 LEICQELRRQGKITPVLFLTAKDTLDDRVQGLDAGADDYLVKPFELRELLARVRALLRRS 125
Query: 122 N 122
+
Sbjct: 126 S 126
>gi|325478465|gb|EGC81579.1| putative transcriptional activator protein CopR [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + R L + L GY +G A D E + +++ DI +P+ DG E
Sbjct: 2 KVLIVEDERKLLRLLKEGLDLLGYVTDVAKDGEEALDLAYVECYDIIILDINLPKKDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + + ++ ++ +T + + ++KPF L++L + LL K+
Sbjct: 62 VLRDIRQFNKEVNIIMLTARSDIDDRVKGLDCGANDYMTKPFDLKELDARMRSLLRRKS 120
>gi|320333199|ref|YP_004169910.1| winged helix family two component transcriptional regulator
[Deinococcus maricopensis DSM 21211]
gi|319754488|gb|ADV66245.1| two component transcriptional regulator, winged helix family
[Deinococcus maricopensis DSM 21211]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ ED+ D+ RF+ L GY +G + K RE L++ D+++P
Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ARR + + ++ +T + + L KPF + +L+ V L
Sbjct: 61 LDGLEVARRIRK-TSNTPIIILTAKDNIQDKVEGLDSGADDYLVKPFSIEELLARVRAHL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRVN 123
>gi|257064991|ref|YP_003144663.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
gi|256792644|gb|ACV23314.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+D+ D+R L L AGY VV +G A D + +P + L DI+MPEMD
Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ +R E D+ V+ ++ + KPF+ + V VN +
Sbjct: 61 GYQVLKRLRE-TSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRR 119
>gi|229093633|ref|ZP_04224733.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-42]
gi|228689720|gb|EEL43527.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-42]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|224536005|ref|ZP_03676544.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
14838]
gi|224522372|gb|EEF91477.1| hypothetical protein BACCELL_00869 [Bacteroides cellulosilyticus DSM
14838]
Length = 1219
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+DD+R ++ + Y +++ NG ++ ++ ++++DI+MP MDGIEL
Sbjct: 1072 ILVVEDNDDIREYIASSFSSN-YRIITAINGKEGLEQALKQIPDIIISDIMMPIMDGIEL 1130
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E + V+ +T ++ + L+KPF + L + V+ LL +
Sbjct: 1131 CKQVKEDIRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1189
>gi|219853357|ref|YP_002470479.1| hypothetical protein CKR_0014 [Clostridium kluyveri NBRC 12016]
gi|219567081|dbj|BAH05065.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 242
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + + L G+ + NG A+ V E L + D+++P++D
Sbjct: 11 MSMNILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L +R E + V+ +T ++KPF +LV V L
Sbjct: 71 GFTLCQRIRENH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRR 129
>gi|206890474|ref|YP_002248031.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206742412|gb|ACI21469.1| response regulator [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 500
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ + L L GYEV+ NG A + ++ + ++L D++MP MDG E+
Sbjct: 8 ILCVDDEPQNLKLLQAILSPRGYEVLVAQNGFLALEILKNQNVDIVLLDVMMPGMDGYEV 67
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + V+ IT A + LSKPF + +++ +N LL +K
Sbjct: 68 CRKIKEDETLRHIPVIMITALTAKEDRIRGIEAGTEEFLSKPFDVGEVLARINMLLRVK 126
>gi|182412142|ref|YP_001817208.1| two component transcriptional regulator [Opitutus terrae PB90-1]
gi|177839356|gb|ACB73608.1| two component transcriptional regulator, winged helix family
[Opitutus terrae PB90-1]
Length = 241
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD+ + L + L + G+ V + + ++ +P L++ D+++P+ DG+
Sbjct: 17 RVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLA 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D + ++ +T V L KPF R+LV + +L
Sbjct: 77 VCREVRA-DSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR 132
>gi|126666867|ref|ZP_01737843.1| Two comoponent transcriptional regulator, winged helix family
protein [Marinobacter sp. ELB17]
gi|126628583|gb|EAZ99204.1| Two comoponent transcriptional regulator, winged helix family
protein [Marinobacter sp. ELB17]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDDD++R L + L G+ V NG R E +++ DI++P+++
Sbjct: 1 MQNRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + L V+ +T +SKP + R+LV ++ LL
Sbjct: 61 GLDVLRQLR-VSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRR 119
>gi|33860688|ref|NP_892249.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633630|emb|CAE18587.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 251
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRELVSGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELYVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|323485044|ref|ZP_08090397.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
gi|323693581|ref|ZP_08107783.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
gi|323401600|gb|EGA93945.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
gi|323502356|gb|EGB18216.1| DNA-binding response regulator [Clostridium symbiosum WAL-14673]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ ++ + L L K + V + NNGA A D + +++ DI+MP+ +G+E
Sbjct: 2 RILIAEDEVELAKGLKFLLEKNKFSVDTVNNGADALDYFHSTDYDVIVLDIMMPKKNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + V+ +T + + L KPF R+ + V L +N
Sbjct: 62 VLSQIRSEGAAVPVLMLTARSEIEDRVAGLEAGADDYLPKPFATREFIARVKA-LARRN 119
>gi|296118440|ref|ZP_06837019.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
DSM 20306]
gi|295968581|gb|EFG81827.1| DNA-binding response regulator RegX3 [Corynebacterium ammoniagenes
DSM 20306]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G+E + ++G +A + ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFEPIVAHDGKTALAEFERHDVDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKQLRA-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|260171744|ref|ZP_05758156.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Bacteroides sp. D2]
gi|315920056|ref|ZP_07916296.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313693931|gb|EFS30766.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1446
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+++++ FL L Y V++ +NG ++ L+++D++MP MDG+E+
Sbjct: 1189 ILVVEDNEELKAFLKSILS-ENYTVITASNGEEGLQHAVDDLPDLIISDVMMPVMDGLEM 1247
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + + ++ ++ A++ ++KPF L V LL +
Sbjct: 1248 IRQIKENNNICHIPIIVLSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRVASLLRQR 1306
>gi|256824251|ref|YP_003148211.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
gi|256687644|gb|ACV05446.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ L L + G+EVV +G S ++ P L+L D+++P M G+E
Sbjct: 3 RILIVEDEASFSDPLSWLLEREGHEVVVREDGRSGLEEFTRNPADLVLLDVMLPGMSGVE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T + ++KP+ R+L+ +N +L +
Sbjct: 63 VCRELRRE-SSVPIIMLTAKDSEVDKVVGLEIGADDYVTKPYSARELLARINAVLRRR 119
>gi|226943895|ref|YP_002798968.1| response regulator, transcriptional regulatory protein
(two-component), ColR [Azotobacter vinelandii DJ]
gi|226718822|gb|ACO77993.1| response regulator, transcriptional regulatory protein
(two-component), ColR [Azotobacter vinelandii DJ]
Length = 227
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L GY V +G S + L++ DI++P +DG +
Sbjct: 2 RILVIEDNRDILANVLDYLELKGYTVDCAQDGLSGLHLAATGQYDLIVLDIMLPGIDGYQ 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T A+ L KPF L +LV + +L
Sbjct: 62 VCERLRRDAGSETPIIMLTARDALDDRLQGLNSGADDYLLKPFALSELVARIEAVLRR 119
>gi|298493190|ref|YP_003723367.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298235108|gb|ADI66244.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 247
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ V+ +T + + L+KPF + +++ V LL
Sbjct: 63 ICQRLRRDERTAEIPVLMLTALSQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|154499728|ref|ZP_02037766.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
29799]
gi|150271326|gb|EDM98583.1| hypothetical protein BACCAP_03385 [Bacteroides capillosus ATCC
29799]
Length = 224
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED++ +R + L AGY V +G +K E+ L+L D+++P+M+
Sbjct: 1 MPKKILVIEDEESIRNIIRAFLEDAGYTVFVAGDGLEGVNKFHEKNPDLVLLDLMLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + ++ +T ++KPF + ++ + +L
Sbjct: 61 GFTVCEILRKE-SRTPIIMLTALDDDDSQLKGFDALADDYITKPFSMPVVMKHIEAVLRR 119
>gi|119718265|ref|YP_925230.1| response regulator receiver [Nocardioides sp. JS614]
gi|119538926|gb|ABL83543.1| response regulator receiver [Nocardioides sp. JS614]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K GYEV NG A + ++L D+++P +
Sbjct: 1 MT-RVLVVEDEESYSDALAYMLRKEGYEVAIAANGNDALTEFDRNGADIVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + V+ ++ ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQIRQ-TSSVPVIMVSAKDDEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRR 118
>gi|119513685|ref|ZP_01632685.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
gi|119461659|gb|EAW42696.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
Length = 366
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D D + L GY + + NGA A ++ + P L+L D++MP MDG
Sbjct: 9 EKILVVDDSPDNVFLIKTILQGEGYIISTAENGADALVELEKSPCDLVLLDLMMPGMDGY 68
Query: 63 ELARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR + P + ++ IT A + KP L +L+ V LL
Sbjct: 69 EVTRRIRGDTKFQPYIPILLITAHDAP-NVAKGLDLGADDFIRKPVTLDELLARVRSLLR 127
Query: 120 IK 121
+K
Sbjct: 128 LK 129
>gi|152996638|ref|YP_001341473.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150837562|gb|ABR71538.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 232
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLA+DD + + + GYEV NG A + + + +++ D++MPE+DG E
Sbjct: 3 KLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T LSKPF+ R+L+ + +L
Sbjct: 63 TLKQIRNK-SSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118
>gi|156742742|ref|YP_001432871.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156234070|gb|ABU58853.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 231
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+D +R L L + G+ +V +G A R E L++ D+++P +DG+
Sbjct: 4 RTLLIVEDEDRLRNLLRGYLEREGFRIVQARDGVQALSLARSEQPDLIILDLMLPGIDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R D V+ +T A L+KPF R+LV V +
Sbjct: 64 EVCHRLR-TFSDAYVLMLTAKAEEMDRVVGLEIGADDYLTKPFSPRELVARVRAMFRR 120
>gi|75760000|ref|ZP_00740067.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492519|gb|EAO55668.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 117
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ ++L+ +D+ DMR+ + L GYE NG A K+ + + ++ DI+MPEM
Sbjct: 1 MNKYRVLVVDDESDMRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + + + D+ ++F+T + + KPF +LV + +
Sbjct: 61 DGLSVCKEIRK-TSDVPIIFLTAKGEEWNRVNGLRMGGDDYIVKPFSPGELVARMEAV 117
>gi|158318323|ref|YP_001510831.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158113728|gb|ABW15925.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + AL G++V + ++G +A +V EP LL+ D+++P++DG
Sbjct: 6 RVLVVDDEEAITDLVAMALRYEGFDVSAAHSGQAALTQVSREPPDLLVLDVMLPDIDGFA 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ +F+T ++KPF + +LV V +L
Sbjct: 66 VCQRLRNAGRDVPTLFLTARDTTEDKVHGLTLGGDDYVTKPFVVSELVARVRAILRR 122
>gi|47567150|ref|ZP_00237866.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
gi|47556206|gb|EAL14541.1| DNA-binding response regulator CiaR [Bacillus cereus G9241]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|325663722|ref|ZP_08152126.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331087242|ref|ZP_08336312.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470215|gb|EGC73448.1| hypothetical protein HMPREF0490_02867 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330408928|gb|EGG88389.1| hypothetical protein HMPREF0987_02615 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V G A + ++ L + D+++P +D
Sbjct: 1 MN--ILVVDDEKEIADVIALYLQSDQYTVYPFYTGEEALECMKTTKIDLAILDVMLPGID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E V+ +T + KPF+ +L+ V L
Sbjct: 59 GFEILKKIRERY-TFPVIMLTAKTEYIDKITGLTLGADDYILKPFNPLELIARVKAQLRR 117
>gi|317501849|ref|ZP_07960034.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
8_1_57FAA]
gi|331088638|ref|ZP_08337549.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316896739|gb|EFV18825.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
8_1_57FAA]
gi|330407595|gb|EGG87095.1| hypothetical protein HMPREF1025_01132 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N K+L+ +D+ MR+ + L + GY V+ +G A D E+ +L++ D++MP+MD
Sbjct: 3 NIKVLVVDDESRMRKLVKDFLTREGYAVLEAGDGMEAMDIFYEDKEIALVILDVMMPKMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R E + ++ +T + + +SKPF + LV VN +L
Sbjct: 63 GWQVCREIRE-TSKVPIIMLTARSEERDELQGFELGVDEYISKPFSPKILVARVNAILRR 121
>gi|254496481|ref|ZP_05109357.1| transcriptional regulatory protein CpxR [Legionella drancourtii
LLAP12]
gi|254354298|gb|EET12957.1| transcriptional regulatory protein CpxR [Legionella drancourtii
LLAP12]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ L + L G+ V ++G + K +PF ++ D+++P+++
Sbjct: 1 MNGNILIIDDDTELTDLLTQYLEPEGFHAVCVHDGENGVKKALNQPFDAIILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKAIREHL-ETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|229089633|ref|ZP_04220895.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228693663|gb|EEL47364.1| Two-component response regulator [Bacillus cereus Rock3-42]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|229013739|ref|ZP_04170867.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides DSM 2048]
gi|229135371|ref|ZP_04264160.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST196]
gi|228648067|gb|EEL04113.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST196]
gi|228747408|gb|EEL97283.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides DSM 2048]
Length = 239
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G++V ++G + + F L++ DI+MP++D
Sbjct: 10 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 70 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 128
>gi|92114536|ref|YP_574464.1| two component transcriptional regulator [Chromohalobacter
salexigens DSM 3043]
gi|91797626|gb|ABE59765.1| two component transcriptional regulator, winged helix family
[Chromohalobacter salexigens DSM 3043]
Length = 237
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + + +DD ++R L L + G+ VV NG + +R+E LL+ DI+MP
Sbjct: 3 MNHATVAVIDDDAEIRELLHAYLSQHGFRVVLAENGDAVPSLLRDESPDLLILDIMMPGE 62
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L R ++ ++ +T + L+KPF+ R+L+ + +L
Sbjct: 63 DGLSLCRDLR-RHSNVPIIMLTASSDETDRILGLELGADDYLAKPFNPRELLARIKAVLR 121
Query: 120 I 120
Sbjct: 122 R 122
>gi|302560333|ref|ZP_07312675.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
gi|302477951|gb|EFL41044.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDSALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|297201515|ref|ZP_06918912.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297147907|gb|EFH28783.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 237
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LLAEDD +R L +AL GY+V + +G A + + P +L+ D++MP +DG+++
Sbjct: 2 LLAEDDRAIRHALERALTLEGYQVTAVADGVEALAQAHKTPPDVLVLDVMMPGIDGLQVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ +T + KPF + ++ + LL
Sbjct: 62 RVLRAEGDRTPILMLTALVETQDRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116
>gi|256397315|ref|YP_003118879.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256363541|gb|ACU77038.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+D + L L G+EV + G +A ++ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEDSISDPLSYMLRNEGFEVAVADTGPAALEEFDRHGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQIRAK-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|189463997|ref|ZP_03012782.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
17393]
gi|189438570|gb|EDV07555.1| hypothetical protein BACINT_00332 [Bacteroides intestinalis DSM
17393]
Length = 1329
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+DD+R ++ + Y +++ NG ++ + ++++DI+MP MDGIEL
Sbjct: 1076 ILIVEDNDDIREYIATSFSNN-YHIMTATNGKEGIEQALKYIPDIIISDIMMPVMDGIEL 1134
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ +T ++ + L+KPF + L + V+ LL +
Sbjct: 1135 CKLIKEDVRTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLHSRVHNLLESR 1193
>gi|162454291|ref|YP_001616658.1| response regulator [Sorangium cellulosum 'So ce 56']
gi|161164873|emb|CAN96178.1| response regulator [Sorangium cellulosum 'So ce 56']
Length = 464
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ +D+ R L K L + GY V + +G A + E P +++TD+ MP MDG
Sbjct: 8 SSRVLVVDDEASARSGLEKLLRQEGYTVDAAADGVEAVEVAAERPPDVVITDLKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L + E DP L V+ +T F V + L+KP L+ + R L
Sbjct: 68 VALLGKLREQDPALPVIVVTAFGDVTSAVLAMRAGAEDYLTKPVDFDALLLTLERALER 126
>gi|148658560|ref|YP_001278765.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148570670|gb|ABQ92815.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD + L +AGY+V+ +G S V + L+L D++MP+ +G ++
Sbjct: 3 ILVADDDLPNVKLTAFVLEEAGYKVIKAYDGPSILQSVEQYNPDLILLDVMMPKTNGFDV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ D+ ++F++ + + L KPF +L+ V +L +N
Sbjct: 63 CRQIR-RTSDVPIIFLSARSQLQDRVTGLQIGGDDYLVKPFEPSELLARVEAVLRRRN 119
>gi|134299369|ref|YP_001112865.1| two component sigma-54 specific Fis family transcriptional
regulator [Desulfotomaculum reducens MI-1]
gi|134052069|gb|ABO50040.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum reducens MI-1]
Length = 448
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D++ M L +ALG GY+V++ G + E SL++ D+ MP++
Sbjct: 1 MIPRILVIDDEERMCWALERALGHEGYQVITATRGLRGIELAHETEPSLVILDLKMPDIT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ ++ ++ V+ IT + ++ ++KPF L +L +V + L +
Sbjct: 61 GIEVLKKIKSINSNIPVIMITAHGTIETAIEAMKFGATDYITKPFKLDELKVQVKQALHL 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|327438528|dbj|BAK14893.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 232
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+ILL EDD ++ R + L K GY V G + + L+L D +MPEMD
Sbjct: 1 MEQQILLVEDDREIARIIKDTLIKEGYAVTWATTGIEGLEDFSAGSYDLILVDWMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + L D+ ++ I+ + + L+KPF L +L V +
Sbjct: 61 GLSMIEHIR-LQSDVPIIMISAKSNESDKVTGLQD-ADDYLAKPFSLEELKARVRSQIRR 118
>gi|296132859|ref|YP_003640106.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296031437|gb|ADG82205.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ +DD ++ L+ L ++V + +G + + E L+L D+++P +
Sbjct: 1 MKQKILVVDDDSNICELLVVYLE-EDFQVKTVFDGNNLEQVISEYRPDLILLDVMLPGKN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + ++ ++F++ ++KPF R++V V +L
Sbjct: 60 GFDICREIRDKY-EIPIIFLSAKGEEIDKVLGLEFGADDYITKPFSPREMVARVKAVLRR 118
>gi|220906521|ref|YP_002481832.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219863132|gb|ACL43471.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 235
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD ++ + + L K G+ +G +A +E L++ D ++P +D
Sbjct: 1 MN--ILIVEDDREIAQLIQTCLSKEGFTCHLRFDGLNAITAYQELQPDLIILDWMLPGLD 58
Query: 61 GIELARRATEL----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+EL R + D ++ +T + L+KPF R+LV V
Sbjct: 59 GLELCARIRQKASGGSKDPFILMLTAKGEELDRIIGLSTGADDYLTKPFSPRELVARVRA 118
Query: 117 LLTI 120
LL
Sbjct: 119 LLRR 122
>gi|182438267|ref|YP_001825986.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466783|dbj|BAG21303.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLQGGIDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAGGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|148241878|ref|YP_001227035.1| two-component system response regulator, phosphate sensing PhoB
[Synechococcus sp. RCC307]
gi|147850188|emb|CAK27682.1| Two-component system response regulator, phosphate sensing PhoB
[Synechococcus sp. RCC307]
Length = 241
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF----SLLLTDIVMPEM 59
++L+ EDDD +R + +AL G+EV + +G++A ++ + P L+L D+++P +
Sbjct: 13 RLLVVEDDDTIRETIAEALSSEGFEVDAVGSGSTALERFKGSPDNPSCDLVLLDLMLPGV 72
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ R ++ ++ + L KPF +R+LV LL
Sbjct: 73 SGLDVCRYMRRRGFSTPIIVVSARDSETDRVVGLEIGADDYLVKPFGMRELVARCRALLR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|91772718|ref|YP_565410.1| response regulator receiver [Methanococcoides burtonii DSM 6242]
gi|91711733|gb|ABE51660.1| PhoP response regulator receiver [Methanococcoides burtonii DSM
6242]
Length = 170
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
K+L+ +D+ D +AL GY V+ NNG A+D ++ + ++L D++MP+MDG
Sbjct: 48 HKVLIVDDEPDAVIATKRALEADGYNVIEANNGTMAFDALKSDIPDVILLDVMMPDMDGF 107
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E L ++ V+ +T + + ++KPF+L++L + +L
Sbjct: 108 EVCRRLKEEPLYENIPVIMLTAKGEINDKVEGLDIGADDYMTKPFNLKELKARIKTVLRR 167
>gi|317496245|ref|ZP_07954605.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
gi|316913820|gb|EFV35306.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
Length = 233
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + + L L K GY+V+ N+G A + E L+L D+++P+
Sbjct: 1 MAEYKILVVDDEEPIAKILDFNLKKEGYDVIIANDGERAVELAFSENPDLILLDLMLPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R ++ ++ +T + ++KPF R+L+ V L
Sbjct: 61 DGMEVCREVRAK-KNIPIIMLTAKNSEIDKVLGLEFGADDYVTKPFSTRELMARVKVNLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|257469148|ref|ZP_05633242.1| two-component response regulator [Fusobacterium ulcerans ATCC
49185]
gi|317063395|ref|ZP_07927880.1| two-component system response regulator [Fusobacterium ulcerans
ATCC 49185]
gi|313689071|gb|EFS25906.1| two-component system response regulator [Fusobacterium ulcerans
ATCC 49185]
Length = 220
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ ++R L L AGYEV +G A E+PF L++ DI++P+ DG
Sbjct: 2 KKILIVEDEKEIRNILKVYLLTAGYEVTESADGEEAMKIFYEKPFDLVILDIMLPKKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E + V+ IT ++KPF + + V +L K
Sbjct: 62 SICREIKE-YSSVPVIIITARDNENDEVFGFEIGADDYITKPFSNKVFLARVKTVLKNK 119
>gi|291298109|ref|YP_003509387.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290567329|gb|ADD40294.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G A + + ++L D+++PE
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGNEALKEYEKAGADIVLLDLMLPEKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R ++ ++ +T + ++KP+ R+LV + +L
Sbjct: 60 GTEVCRELR-TTSNVPIIMVTARDSEVDKVVGLEIGADDYITKPYSPRELVARIRAVLRR 118
>gi|228946826|ref|ZP_04109128.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228812813|gb|EEM59132.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 226
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|283797300|ref|ZP_06346453.1| regulatory protein VanR [Clostridium sp. M62/1]
gi|291074970|gb|EFE12334.1| regulatory protein VanR [Clostridium sp. M62/1]
gi|295090459|emb|CBK76566.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY V N D + E L+L DI+MP MDG+E+
Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CRKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120
>gi|206976925|ref|ZP_03237827.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|206744891|gb|EDZ56296.1| DNA-binding response regulator [Bacillus cereus H3081.97]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|30264605|ref|NP_846982.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47530074|ref|YP_021423.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187428|ref|YP_030680.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65321903|ref|ZP_00394862.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165871505|ref|ZP_02216152.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167635564|ref|ZP_02393876.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167641577|ref|ZP_02399824.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170688250|ref|ZP_02879460.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170708682|ref|ZP_02899120.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177653111|ref|ZP_02935398.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190566979|ref|ZP_03019895.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227817319|ref|YP_002817328.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229602420|ref|YP_002868816.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254686972|ref|ZP_05150830.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254724536|ref|ZP_05186319.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254736642|ref|ZP_05194348.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741680|ref|ZP_05199367.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254754723|ref|ZP_05206758.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254757555|ref|ZP_05209582.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30259263|gb|AAP28468.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47505222|gb|AAT33898.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181355|gb|AAT56731.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164712802|gb|EDR18332.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167510462|gb|EDR85861.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167528984|gb|EDR91739.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170126362|gb|EDS95251.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170667756|gb|EDT18509.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172081635|gb|EDT66706.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190561970|gb|EDV15939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227007249|gb|ACP16992.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229266828|gb|ACQ48465.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G D + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVDTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|313904165|ref|ZP_07837544.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313470967|gb|EFR66290.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 231
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + ++VV +G A + ++ +L++ D++MP+
Sbjct: 1 MDKLKILVVDDEARMRKLVRDFLIRNDFDVVEAGDGEEALNVFYEDKNVALIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + + ++ +T + + ++KPF + LV V +L
Sbjct: 61 MDGWQVCREIRKE-SKVPIIMLTARSEERDELLGFELGVDEYIAKPFSPKILVARVEAIL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRTN 123
>gi|302037343|ref|YP_003797665.1| sigma-54 dependent transcriptional regulator [Candidatus Nitrospira
defluvii]
gi|300605407|emb|CBK41740.1| Sigma-54 dependent transcriptional regulator [Candidatus Nitrospira
defluvii]
Length = 448
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+A+DD + L GYEV++ ++G SA + + LL+ DI MP +
Sbjct: 1 MKPIVLVADDDPSILEILKLGFRTKGYEVITASDGKSAIQAIEQNRPDLLVLDIEMPHLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + P L V+ +T ++L ++ + ++KPF + L+ + + L
Sbjct: 61 GIEVLRHLRKDWPTLPVVIMTAHGTISLAVEAMKEGATEFITKPFEMEQLLLVIQKALER 120
Query: 121 K 121
+
Sbjct: 121 E 121
>gi|239909145|ref|YP_002955887.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239799012|dbj|BAH78001.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 581
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ R F ++AL K G+ V + +G A + + L+L DI MP ++G+E
Sbjct: 460 RILLAEDEPVNRIFTVRALQKLGHAVDAAADGREALAMLERGAYDLVLMDIQMPRLNGLE 519
Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR P + V+ +T +A + ++KPF +L + R L
Sbjct: 520 ATRRIRSGQVEGVPPTMPVVALTAYAMEGDRQKGLEAGMDEYVTKPFEPAELTAAMERAL 579
>gi|119898000|ref|YP_933213.1| osmolarity response regulator [Azoarcus sp. BH72]
gi|119670413|emb|CAL94326.1| response regulator [Azoarcus sp. BH72]
Length = 248
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD +R L + L + G+ V + + + E F L++ D+++P DG+
Sbjct: 11 RVLLVDDDARLRELLSRYLQEQGFAVKAVVDAPMMDRALHREHFDLIVLDLMLPGEDGLA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ +T L KPF+ R+LV + ++ +
Sbjct: 71 ICRRLRGAENHIPIIMLTAKGDDVDRIVGLEMGADDYLPKPFNPRELVARIQAVMRRQ 128
>gi|134298626|ref|YP_001112122.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134051326|gb|ABO49297.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 223
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L +AL GY V N+G + +E P LL+ DI++P +D
Sbjct: 1 MGARVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R + D ++ ++ V L KPF L +L+ V LL
Sbjct: 61 GWEICQRFRK-DNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|300867045|ref|ZP_07111713.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
gi|300334942|emb|CBN56879.1| putative adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
Length = 1122
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
K+L+ +D+ R+ LI L Y + +NG A + L+L D++MP+M G
Sbjct: 712 KVLIVDDEPINRQVLINNLSLYNYAITEASNGQEALTAMENGFIPDLILLDLMMPQMTGY 771
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ P +L ++ +T VA + LSKP ++++ + +++
Sbjct: 772 EVCQKIRARFPTYELPIVMLTAKNQVADIVEGFESGANDYLSKPIQKQEMLARIKTHISL 831
>gi|297194039|ref|ZP_06911437.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|297152078|gb|EFH31517.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|228899255|ref|ZP_04063518.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228963662|ref|ZP_04124806.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228796010|gb|EEM43474.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228860286|gb|EEN04683.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 228
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|167632875|ref|ZP_02391201.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170686480|ref|ZP_02877701.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|227815224|ref|YP_002815233.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|167531687|gb|EDR94352.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170669556|gb|EDT20298.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|227004679|gb|ACP14422.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
Length = 225
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L G++ +G A K+ + +++ DI+MP MD
Sbjct: 1 MIPNILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|164520430|gb|ABY60270.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG++VV+ +G S Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRSGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|164520386|gb|ABY60248.1| PhoP [Listeria monocytogenes]
gi|164520390|gb|ABY60250.1| PhoP [Listeria monocytogenes]
gi|164520396|gb|ABY60253.1| PhoP [Listeria monocytogenes]
gi|164520404|gb|ABY60257.1| PhoP [Listeria monocytogenes]
gi|164520424|gb|ABY60267.1| PhoP [Listeria monocytogenes]
gi|164520428|gb|ABY60269.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG+EVV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFEVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|42784015|ref|NP_981262.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42739945|gb|AAS43870.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYIVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|226954429|ref|ZP_03824893.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
27244]
gi|294651444|ref|ZP_06728758.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
gi|226834778|gb|EEH67161.1| OmpR family transcriptional regulator [Acinetobacter sp. ATCC
27244]
gi|292822690|gb|EFF81579.1| OmpR family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I+L ED+ ++ + + L AG+EV ++G AY + ++ SL++ D+++P
Sbjct: 1 MKIMKHIMLVEDEVELAQLVRDYLEAAGFEVSMFHDGQDAYTQFQQRKPSLMILDLMVPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ + R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 61 MDGLTICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|30022615|ref|NP_834246.1| two-component response regulator ycbL [Bacillus cereus ATCC 14579]
gi|229112000|ref|ZP_04241543.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock1-15]
gi|229129822|ref|ZP_04258788.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-Cer4]
gi|296505012|ref|YP_003666712.1| two-component response regulator ycbL [Bacillus thuringiensis
BMB171]
gi|29898173|gb|AAP11447.1| Two-component response regulator ycbL [Bacillus cereus ATCC 14579]
gi|228653513|gb|EEL09385.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-Cer4]
gi|228671323|gb|EEL26624.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock1-15]
gi|296326064|gb|ADH08992.1| two-component response regulator ycbL [Bacillus thuringiensis
BMB171]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|325570561|ref|ZP_08146287.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
gi|325156407|gb|EGC68587.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
Length = 222
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD MR + GY ++G +K+ F L+L D++MP DG
Sbjct: 2 QKILIVDDDTHMRALVKTYAEIEGYLCFEASDGKETLEKLTNHSFDLILLDVMMPGKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ IT ++KPF ++L+ + +L +
Sbjct: 62 QTLSEIRG-SCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSS 120
>gi|323482861|ref|ZP_08088262.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
WAL-14163]
gi|323691647|ref|ZP_08105909.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323403786|gb|EGA96083.1| hypothetical protein HMPREF9474_00011 [Clostridium symbiosum
WAL-14163]
gi|323504281|gb|EGB20081.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ ++ + L GY+V +N + D + +E L+L DI+MP M
Sbjct: 1 MSEINILVVDDEKEIAELVEIYLVSDGYKVYKADNAQAGLDILEKETIHLVLLDIMMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 61 DGLEMCKKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|298505432|gb|ADI84155.1| sigma-54-dependent transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 461
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +RR L L + GY+V++ +G E +L++TD+ MP M G
Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRLFDERSPALVVTDLKMPGMGGFR 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + PD V+ IT F AV D+ ++KPF+ L V + L +
Sbjct: 70 LLQEIKGRSPDTAVIVITAFGAVETAVDAMKAGAYDYITKPFNRDALKLTVKKALEM 126
>gi|255009666|ref|ZP_05281792.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + L + L ++GY+V +G R F ++++D+++P+M G E
Sbjct: 3 KILVVEDEQRVAELLKRGLEESGYQVELAYDGVWGLRLFRAGEFQMVISDVILPKMSGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + ++ + V+ +T D + KPF R+L + LL +
Sbjct: 63 LCKEIRNINNRVPVLMLTALGTTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRR 120
>gi|228941999|ref|ZP_04104542.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228974930|ref|ZP_04135491.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981523|ref|ZP_04141820.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228778202|gb|EEM26472.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228784783|gb|EEM32801.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228817668|gb|EEM63750.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326942601|gb|AEA18497.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 229
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGANDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|153812201|ref|ZP_01964869.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
gi|149831608|gb|EDM86695.1| hypothetical protein RUMOBE_02599 [Ruminococcus obeum ATCC 29174]
Length = 227
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K + V+ +G A D E+ +LL+ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLEKKNFHVLEAGDGEEAMDIFYEEKDIALLILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + + ++ +T + +SKPF + LV V +L
Sbjct: 65 EVCREIRK-NSKVPIIMLTARGDERDELLGFDLGVDEYISKPFSPKILVARVEAILRR 121
>gi|149377685|ref|ZP_01895421.1| Phosphate regulon transcriptional regulatory protein phoB
[Marinobacter algicola DG893]
gi|149358038|gb|EDM46524.1| Phosphate regulon transcriptional regulatory protein phoB
[Marinobacter algicola DG893]
Length = 230
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +D+ +R + AL A Y+ + + A+ + ++ L+L D ++P
Sbjct: 1 MTGKTVLIVDDEAPIREMIAVALEMADYDYLEAADAREAHALIVDKQPDLILLDWMLPGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+ELARR E ++ ++ +T ++KPF R+LV + +
Sbjct: 61 SGVELARRLKKEEATAEIPIIMLTAKVEEDNKIQGLEVGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|146281292|ref|YP_001171445.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
gi|145569497|gb|ABP78603.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
Length = 234
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL GY V +GASA + E F L++ D+ +P +DG+E
Sbjct: 17 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + V+ +T A + L KPF + +L + LL
Sbjct: 77 LLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR 133
>gi|186681953|ref|YP_001865149.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186464405|gb|ACC80206.1| two component transcriptional regulator, LuxR family [Nostoc
punctiforme PCC 73102]
Length = 231
Score = 148 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + L ++G+ V +N ++ ++ L+++D++MP++D
Sbjct: 1 MSAQLLLVDDEPGIREAVKDYLQESGFSVQVASNALEGWEWMQMNTPDLVISDVMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E L V+F+T L KPF +LV V LL
Sbjct: 61 GYQFLKQLREDPRFQALPVVFLTAKGMTGDRIQGYHAGVDAYLPKPFDPDELVAIVENLL 120
Query: 119 TIK 121
+
Sbjct: 121 ARR 123
>gi|229028363|ref|ZP_04184487.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228732911|gb|EEL83769.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|294814051|ref|ZP_06772694.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
gi|326442455|ref|ZP_08217189.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|294326650|gb|EFG08293.1| PhoP regulatory protein [Streptomyces clavuligerus ATCC 27064]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|261339169|ref|ZP_05967027.1| hypothetical protein ENTCAN_05392 [Enterobacter cancerogenus ATCC
35316]
gi|288319013|gb|EFC57951.1| DNA-binding response regulator SrrA [Enterobacter cancerogenus ATCC
35316]
Length = 235
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD D+ L L GY + +G +A + ++ + ++ D+++P +D
Sbjct: 1 MKQ-ILLVEDDRDIAALLRLNLEDEGYTITHEPDGGNALRLLEKQSWDAVILDLMLPSVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ L V+ I+ ++ L+KPF +++L+ + L
Sbjct: 60 GLEICRRIRQMTRYLPVIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|21388712|dbj|BAC00821.1| phosphate regulon transcriptional regulatory protein [Rhodobacter
sphaeroides f. sp. denitrificans]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L G+ VV NG A V E +++ D ++P + GIE+
Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ ++ + + KP+ + +L+ V L
Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRR 126
>gi|327479451|gb|AEA82761.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
Length = 219
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL GY V +GASA + E F L++ D+ +P +DG+E
Sbjct: 2 RILLVEDDRALGEGIRTALKPEGYTVDWLQDGASALHALNHESFELVILDLGLPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + V+ +T A + L KPF + +L + LL
Sbjct: 62 LLKRLRAAGNPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVAELKARLRALLRR 118
>gi|326800747|ref|YP_004318566.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
gi|326551511|gb|ADZ79896.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + L + L + GY+ +G V ++ + L++ DI++P+++GI+
Sbjct: 2 HILIIEDESRIAQLLQRGLEELGYKTTVAYDGILGKKLVWQQAYDLIIMDIILPKINGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E PDL ++ +T + L KPF R+L + LL
Sbjct: 62 LCREIKESYPDLPIIMLTALGTTDDKLEGFDAGADDYLVKPFDFRELEARIRVLLKR 118
>gi|300933784|ref|ZP_07149040.1| two-component system response regulator TcsR8 [Corynebacterium
resistens DSM 45100]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+EV +G +A D + ++L D+++P M G E+
Sbjct: 4 VLIVEDEESLAEPLAFLLKKEGFEVHLAADGPTALDTFAAQDIDIVLLDLMLPGMSGTEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CRQLRQ-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|296392538|ref|YP_003657422.1| PhoB family transcriptional regulator [Segniliparus rotundus DSM
44985]
gi|296179685|gb|ADG96591.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length = 240
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 56/116 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ L + L G+ V +N A V +EP ++ D+++P MDG L
Sbjct: 16 ILIVDDEPNIAYLLRECLLAQGFSVKEAHNPTDALAVVTKEPPDAMILDVMLPGMDGYTL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E+ + V+F+T ++ ++KPF L ++V + +L
Sbjct: 76 LRRVREMGTECPVLFLTARDSLEDKLTGLTIGGDDYVTKPFSLEEVVARLRVILRR 131
>gi|294495691|ref|YP_003542184.1| response regulator receiver protein [Methanohalophilus mahii DSM
5219]
gi|292666690|gb|ADE36539.1| response regulator receiver protein [Methanohalophilus mahii DSM
5219]
Length = 285
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L YE+ +G KV E+ L+L DI+MP M G +
Sbjct: 8 KILIVDDEPQNLDLMEAYLSHL-YEITLAESGEECLQKVEEKDIDLILLDIMMPGMSGYD 66
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A+ E + + ++ +T + S L+KP + +L+ V LL IK
Sbjct: 67 VAKTLKESESTRHIPIIMVTALSEKEDRIKSIEVGADDFLTKPVNRVELLTRVKSLLRIK 126
Query: 122 N 122
+
Sbjct: 127 S 127
>gi|182680313|ref|YP_001834459.1| two component transcriptional regulator [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636196|gb|ACB96970.1| two component transcriptional regulator, winged helix family
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 252
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L L G+EV S G A ++ E L+L D ++P + G+E
Sbjct: 25 RILLVEDEAALSTLLTYNLEAEGFEVESLECGDEAEARLDESLPDLVLLDWMLPGVSGLE 84
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + L ++ +T + A + KPF + +L+ V LL
Sbjct: 85 ICRRIRAREKTRALPIIMLTARGEESEKIRGLATGADDYIVKPFSVPELMARVRALLRR 143
>gi|163786994|ref|ZP_02181441.1| two-component system, transcriptional regulatory protein
[Flavobacteriales bacterium ALC-1]
gi|159876882|gb|EDP70939.1| two-component system, transcriptional regulatory protein
[Flavobacteriales bacterium ALC-1]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILLAEDD D L + L +GY + +G A + + +++ + D++MP+MDG
Sbjct: 2 KHILLAEDDLDFGNILKQYLEISGYTITWAKDGKEALELFKNGAYNICVFDVMMPKMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA + +L+P++ +F+T + KPF +LV +N +L
Sbjct: 62 TLAEKVVDLNPEIPFIFLTARKLKEDKIKGLKLGADDYIVKPFEADELVLRLNNILKR 119
>gi|83644677|ref|YP_433112.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83632720|gb|ABC28687.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 223
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + +R+ L+ LG AGY V + +G E+ + L++ DI++P M+G E
Sbjct: 2 RLLVIEDAEILRQSLVIGLGDAGYVVDAAADGEEGLWLASEQGYDLIILDIMLPHMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L D V+ +T V L KPF +L+ + LL +
Sbjct: 62 LLDRLRTLGADSLVLMLTARDEVEDRVLGLRSGADDYLVKPFDFDELLARIEALLRRR 119
>gi|80973243|gb|ABB53349.1| VanRB [Eggerthella lenta]
Length = 219
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+
Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D ++ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR 119
>gi|319651162|ref|ZP_08005294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
gi|317397144|gb|EFV77850.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
Length = 224
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ DMR + LG +G+ S +G AY + L++ DI+MP DG E+
Sbjct: 4 ILIIDDEADMRHLIEMYLGNSGFTCFSAESGFEAYGILENNVMDLVILDIMMPGEDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ ++F++ + + KPF +L+ +N +L
Sbjct: 64 CSRIRGK-SNVPIIFLSAKGEEWDKVKALQLGGDDYIVKPFSPGELIARMNAVLRR 118
>gi|222098721|ref|YP_002532779.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|221242780|gb|ACM15490.1| DNA-binding response regulator [Bacillus cereus Q1]
Length = 223
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ +E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWKEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|205372741|ref|ZP_03225551.1| hypothetical protein Bcoam_04690 [Bacillus coahuilensis m4-4]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
KIL+ ED++ + + K G+E +G + P + +L D ++P MDG
Sbjct: 2 KILVVEDNESVCSMIEMFFLKEGWEGAFATDGKEGWALFESNPTGYDFILLDWMLPGMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I L R+ + ++ V+ +T + + ++KPF L+ + + +
Sbjct: 62 ITLCRKIRGVTKNVPVIMLTAKDSDSDQVLGLEMGADDYVTKPFSPLTLMARIKAV-RRR 120
>gi|325275465|ref|ZP_08141393.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324099396|gb|EGB97314.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 240
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DDD++R L L AGY V+ +G ++ L++ D+++P D
Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLADAGYNVLEAADGEQMRAQMARHTVDLVVLDLMLPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L
Sbjct: 61 GLSLCRQL-QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119
>gi|284047543|ref|YP_003397882.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
gi|283951764|gb|ADB46567.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD D+ L G+ V +G + +E L+L DI++P MDG
Sbjct: 2 EKILIVEDDLDIAELERDYLEANGFAVAIAGDGLAGEKAALDEKVDLVLLDIMLPGMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ RR E ++ ++ ++ + KPF +LV V L
Sbjct: 62 QVCRRIREKR-NIPILLVSARQEDVDKIRGLGLGADDYIVKPFSPGELVARVKAHLQR 118
>gi|228906317|ref|ZP_04070202.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228853340|gb|EEM98112.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVVEDNTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|229819772|ref|YP_002881298.1| two component transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229565685|gb|ACQ79536.1| two component transcriptional regulator, winged helix family
[Beutenbergia cavernae DSM 12333]
Length = 242
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ + + G+ V ++G + + + +++ D+++P +DG+E
Sbjct: 11 RVLVVEDEPDIATSIARRFTAEGWTVEIASDGLAGVEAAKRYAPDVIVLDVMLPGIDGLE 70
Query: 64 LARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR DP + ++ +T ++KPF +R+L+ V LL
Sbjct: 71 VCRRIQAEDPRAVPILMLTARDDETDLLVGLGVGADDYMTKPFSMRELLARVKALLRR 128
>gi|187779416|ref|ZP_02995889.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
15579]
gi|187773041|gb|EDU36843.1| hypothetical protein CLOSPO_03012 [Clostridium sporogenes ATCC
15579]
Length = 221
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + RE F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFREGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|182412631|ref|YP_001817697.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
gi|177839845|gb|ACB74097.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
Length = 367
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D L++ LG AGY ++ +G A + + L+L D++MP +D
Sbjct: 1 MSETILIVDDTPANLCVLVETLGAAGYRLMVAEDGEEALAQTAQTVPDLILLDVMMPGID 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E RR D V+F+T + A ++KP + + V L
Sbjct: 61 GFETCRRLRAQPTTADTPVLFMTALNETPDKVKAFAAGGVDYITKPIEHEEALARVRTHL 120
Query: 119 TIK 121
T++
Sbjct: 121 TLR 123
>gi|170781102|ref|YP_001709434.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
gi|169155670|emb|CAQ00790.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L G+E C +G A E L+L D+++P +D
Sbjct: 1 MTARILVVDDDTALAEMIGIVLRTEGFEPSFCADGGQALAAFHEAKPDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ + ++ +T + A + KPF+ ++LV + L
Sbjct: 61 GIQVCDLIRAE-SGIPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118
>gi|153875315|ref|ZP_02003172.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152068221|gb|EDN66828.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 383
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + L + L G++V+ NG A L+L D++MP M G E
Sbjct: 8 TILIVDDIQENISVLFRFLSDEGFKVLIAQNGEQALRISEIGHPDLILLDVMMPGMSGFE 67
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++F+T + + A ++KP +++ VN + I
Sbjct: 68 VCNQLKNNEKTQEIPIIFMTALTDIVDKIKGFSLGAADYITKPIQQEEVLARVNTHIKI 126
>gi|323490388|ref|ZP_08095603.1| two-component response regulator (YclK) [Planococcus donghaensis
MPA1U2]
gi|323396058|gb|EGA88889.1| two-component response regulator (YclK) [Planococcus donghaensis
MPA1U2]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L K G +G Y+K +E LL+ D ++P MDGI
Sbjct: 2 RILVVEDNPSVSSMLELFFSKEGINGEFAADGLEGYEKYKEGGHDLLILDWMLPGMDGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E + ++ +T + + ++KPF L+ + +
Sbjct: 62 LCRKIREEGSSVPIIMLTAKDSESDQVIGFEMGADDYVTKPFSPLTLMARIKAVTRR 118
>gi|261212267|ref|ZP_05926553.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
RC341]
gi|260838875|gb|EEX65526.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
RC341]
Length = 1112
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + V+ E LLL DI+MP M G ++
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGHEVLEAVKREKPELLLLDIMMPGMSGYQVC 767
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 768 EKLRQSYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIVAHLT 823
>gi|215429436|ref|ZP_03427355.1| two component system DNA binding transcriptional regulatory protein
tcrA [Mycobacterium tuberculosis EAS054]
gi|289752642|ref|ZP_06512020.1| two component DNA binding transcriptional regulatory protein TCRA
[Mycobacterium tuberculosis EAS054]
gi|289693229|gb|EFD60658.1| two component DNA binding transcriptional regulatory protein TCRA
[Mycobacterium tuberculosis EAS054]
Length = 253
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 24 RILVVEDEPKMTVLLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 140
>gi|261406258|ref|YP_003242499.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|329922002|ref|ZP_08277809.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
HGF5]
gi|261282721|gb|ACX64692.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
gi|328942462|gb|EGG38725.1| putative sensory transduction protein RegX3 [Paenibacillus sp.
HGF5]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M+ K+L+ ED++ +R F++ L + G+EV+ NG A ++ P + L D+++P +
Sbjct: 1 MS-KVLILEDEESIRSFIVINLKRNGFEVLETENGNEALRLLQTTPDIDIALLDVMVPGI 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RR E + + ++F+T + + +SKPF +L+ + LL
Sbjct: 60 DGFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|83942434|ref|ZP_00954895.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. EE-36]
gi|83846527|gb|EAP84403.1| phosphate regulon transcriptional regulatory protein PhoB
[Sulfitobacter sp. EE-36]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ R L L G++V NG A V E L++ D +MP + GIE+
Sbjct: 8 ILLVEDEPAQREILAYNLESEGFDVRRAENGEEAILLVAEALPDLIILDWMMPLLSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E ++ V+ ++ + + KP+ +R+L+ V L
Sbjct: 68 CRQLKTREDTRNIPVIMLSARSEEVDTVRGLETGADDYVVKPYSMRELMARVRTQLRR 125
>gi|172058186|ref|YP_001814646.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171990707|gb|ACB61629.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 220
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+AED+ D+R L + L +GY V S NG A + F L++ DI+MP +D
Sbjct: 1 MT-HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A++ + ++F+T ++KPF LR L+ + ++
Sbjct: 60 GFEVAQQVRK-TSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKPFSLRILLRRIEAVIRR 118
>gi|325280518|ref|YP_004253060.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
gi|324312327|gb|ADY32880.1| two component transcriptional regulator, winged helix family
[Odoribacter splanchnicus DSM 20712]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKILL EDD L L + YEV C NG + R++ F + L D++MPEMD
Sbjct: 1 MAQKILLVEDDPCFGSVLKSYLELSDYEVTLCVNGNDGLEAFRKDKFDICLLDVMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E+D ++ ++IT + + KPF L+ ++ +L+
Sbjct: 61 GFTLGKKIREIDGNVPFVYITAKSMKEDMKQGYEIGADDYIVKPFDSEVLILKIKAILSR 120
>gi|308068213|ref|YP_003869818.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
gi|305857492|gb|ADM69280.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D+ +R L AL + G+ V + +G A +KVR +L+ D++MP++
Sbjct: 1 MDKKILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + ++ +T + +SKPF LR+L+ + L+
Sbjct: 61 GYEVCRRL-ESRKGIGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRR 119
>gi|294629682|ref|ZP_06708242.1| DNA-binding response regulator [Streptomyces sp. e14]
gi|292833015|gb|EFF91364.1| DNA-binding response regulator [Streptomyces sp. e14]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|290959917|ref|YP_003491099.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260649443|emb|CBG72558.1| putative two-component system response regulator [Streptomyces
scabiei 87.22]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 4 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 64 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 122
>gi|257453592|ref|ZP_05618882.1| phosphate regulon transcriptional regulatory protein PhoB
[Enhydrobacter aerosaccus SK60]
gi|257449050|gb|EEV24003.1| phosphate regulon transcriptional regulatory protein PhoB
[Enhydrobacter aerosaccus SK60]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD 60
N+ IL+ ED+ +R ++ L AG++ + + + A+ V + +L+L D ++P +
Sbjct: 3 NETILVVEDEPAIREMIVTTLEMAGFDCLQASEVSQAHHLVVDHRPNLILLDWMLPNGLS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L RR E+ ++ ++ +T ++KPF R+LV+ + +L
Sbjct: 63 GIDLCRRLKKDEMLSEIPIIMLTAKGEEDNKVQGLDAGADDYITKPFSTRELVSRIKAVL 122
Query: 119 TIKN 122
+
Sbjct: 123 RRSS 126
>gi|227506355|ref|ZP_03936404.1| response regulator [Corynebacterium striatum ATCC 6940]
gi|227197006|gb|EEI77054.1| response regulator [Corynebacterium striatum ATCC 6940]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G+EV S N+G A RE + D++MP MDG E
Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFEVFSANSGTEALRVAREVNPDAYIMDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D V+++T +V ++KPF L +++ + +L
Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 124
>gi|21693597|gb|AAM75361.1|AF521648_1 PhoB [Pseudomonas syringae]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ +R + AL AGY+ + +N A+ + + L+L D ++P
Sbjct: 1 MAGRSILIVDDEAPIREMIAVALEMAGYDCLEADNAQDAHAIIVDRKPDLILLDWMLPGG 60
Query: 60 -DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
GIELARR EL D+ ++ +T ++KPF R+LV +
Sbjct: 61 TSGIELARRLKREELTSDIPIIMLTAKGEEDNKIQGLEVGVDDYITKPFSPRELVARLKA 120
Query: 117 LLTI 120
+L
Sbjct: 121 VLRR 124
>gi|217388361|ref|YP_002333390.1| regulatory protein VanR [Enterococcus faecalis]
gi|227517498|ref|ZP_03947547.1| response regulator [Enterococcus faecalis TX0104]
gi|260559887|ref|ZP_05832066.1| regulatory protein vanRB [Enterococcus faecium C68]
gi|11345398|gb|AAG34686.1|AF310956_1 response regulator [Enterococcus faecium]
gi|55709826|gb|AAV58811.1| vanRB [Clostridium sp. CCRI-9842]
gi|61743147|gb|AAX55325.1| VanRB [Clostridium hathewayi]
gi|61743150|gb|AAX55327.1| VanRB [Clostridium hathewayi]
gi|61743153|gb|AAX55329.1| VanRB [Clostridium hathewayi]
gi|80973253|gb|ABB53358.1| VanRB [Clostridium sp. MLG245]
gi|80973264|gb|ABB53368.1| VanRB [Enterococcus faecium]
gi|216409903|dbj|BAH02338.1| vanR [Enterococcus faecalis]
gi|227075103|gb|EEI13066.1| response regulator [Enterococcus faecalis TX0104]
gi|229463102|gb|ACQ66100.1| response regulator [Enterococcus faecium]
gi|260074111|gb|EEW62434.1| regulatory protein vanRB [Enterococcus faecium C68]
Length = 219
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+
Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D ++ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR 119
>gi|324993651|gb|EGC25570.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
gi|324995037|gb|EGC26950.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
gi|327462920|gb|EGF09241.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
gi|327474524|gb|EGF19929.1| DNA-binding response regulator [Streptococcus sanguinis SK408]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|302551904|ref|ZP_07304246.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302469522|gb|EFL32615.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 8 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGVDLVVLDLGLPGMD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 67 GLEVARRLRGEGHAIPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 126
>gi|262374891|ref|ZP_06068125.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
gi|262309904|gb|EEY91033.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + + L AG+EV ++G AY+ + SL++ D+++P MDG+
Sbjct: 2 KHVMLVEDEIELAQLVRDYLEAAGFEVSMFHDGQEAYNSFTQRKPSLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T L KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYLCKPFSPKELVARVQAVLRR 118
>gi|228918481|ref|ZP_04081925.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228950319|ref|ZP_04112489.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809337|gb|EEM55788.1| hypothetical protein bthur0007_63830 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228841166|gb|EEM86364.1| hypothetical protein bthur0012_56190 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 242
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ ++R L K + + Y+V +G A + + L + D++MP++DGIE
Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ +T + ++KPF + ++V V L+
Sbjct: 71 VCRKLREKT-NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126
>gi|229097656|ref|ZP_04228614.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|228685795|gb|EEL39715.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R + L GY ++ +G A E L++ DI++PE+D
Sbjct: 1 MQRTILIVEDEDILREIMKDYLLNEGYNILEAIDGKEALSIFEEYEVHLIILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RL+
Sbjct: 61 GWAVCRRIRKK-SNVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLMES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|220905533|ref|YP_002480845.1| winged helix family two component transcriptional regulator
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
gi|219869832|gb|ACL50167.1| two component transcriptional regulator, winged helix family
[Desulfovibrio desulfuricans subsp. desulfuricans str.
ATCC 27774]
Length = 240
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I L +DD ++ L L K G+EV NG + D +R + L++ D+++P DG
Sbjct: 5 QTICLVDDDREILDLLSGYLKKHGFEVSCAENGDALMDILRRDRPDLIVLDVMLPGQDGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++F++ ++KPF R+L+ + +L
Sbjct: 65 MVCREVRKQWR-IPIIFLSALGESTDRVVGLELGADDYMAKPFEPRELLARIRSVLRR 121
>gi|255324243|ref|ZP_05365365.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
gi|255298759|gb|EET78054.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
Length = 235
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G+E + ++G +A +K ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFEPIIAHDGPTALEKFAANDIDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTEVCKQLR-TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|150007699|ref|YP_001302442.1| two-component system response regulator [Parabacteroides distasonis
ATCC 8503]
gi|256839960|ref|ZP_05545469.1| phosphate regulon transcriptional regulatory protein PhoB
[Parabacteroides sp. D13]
gi|149936123|gb|ABR42820.1| two-component system response regulator [Parabacteroides distasonis
ATCC 8503]
gi|256738890|gb|EEU52215.1| phosphate regulon transcriptional regulatory protein PhoB
[Parabacteroides sp. D13]
Length = 225
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++
Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|302387499|ref|YP_003823321.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302198127|gb|ADL05698.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L ++V C + A ++ E F L + D+++P+ +
Sbjct: 1 MNEKILIIDDEKEITDLIEVFLQNENFQVFKCYSSQDALMLIKNESFDLAIIDVMLPDGN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + E ++ +T + ++KPF +LV V L
Sbjct: 61 GFELCKLIREKY-TYPIIMLTSKTEGIDRVTGLSLGADDYVTKPFLPLELVARVKAQLRR 119
>gi|227486950|ref|ZP_03917266.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227093024|gb|EEI28336.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
Length = 304
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G++ V +GA A E L+L D+++P M+
Sbjct: 79 MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 138
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
GI++ + P + ++ +T ++KPF ++
Sbjct: 139 GIDICKTIRRSSP-VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 186
>gi|222094028|ref|YP_002528080.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|229194647|ref|ZP_04321443.1| Two-component response regulator [Bacillus cereus m1293]
gi|221238078|gb|ACM10788.1| DNA-binding response regulator [Bacillus cereus Q1]
gi|228588840|gb|EEK46862.1| Two-component response regulator [Bacillus cereus m1293]
Length = 233
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|297200162|ref|ZP_06917559.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197713388|gb|EDY57422.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 225
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MDG+E
Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGMQGGIDLVVLDLGLPGMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 63 VARRLRAEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|187919209|ref|YP_001888240.1| two component winged helix family transcriptional regulator
[Burkholderia phytofirmans PsJN]
gi|187717647|gb|ACD18870.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 245
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDIDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|123967682|ref|YP_001008540.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
gi|123197792|gb|ABM69433.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
Length = 260
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|330878943|gb|EGH13092.1| DNA-binding response regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 254
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D +R L L + ++V + + A + +R++PF +++ D+++P+ DG E
Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ V+ +T A L+KPF R+LV +N +L +
Sbjct: 72 LCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128
>gi|323703748|ref|ZP_08115387.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
gi|323531272|gb|EGB21172.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum nigrificans DSM 574]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ +FL L G+EV + +G +A + +++ +++ D++MP MDG E
Sbjct: 11 KILLVDDEPNILQFLELGLSNEGFEVQTAQDGLTAINLMKQFQPHVVILDVMMPGMDGFE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++D ++ V+ +T V + KPF +L+ + I+N
Sbjct: 71 VCRMLKKMD-NVAVIMLTAKDEVDDRVKGLNLGADDYMIKPFSFEELLARIYA--RIRN 126
>gi|289523923|ref|ZP_06440777.1| phosphate regulon transcriptional regulatory protein PhoB
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502579|gb|EFD23743.1| phosphate regulon transcriptional regulatory protein PhoB
[Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 236
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 61/125 (48%), Gaps = 3/125 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KILL ED++++ + + L GYE++ +G A + E L++ D+++P M
Sbjct: 1 MSGEKILLVEDEENIASLVSQYLSMQGYEIIKAADGDRALEICYESLPDLIILDLMLPIM 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + + D+ ++ +T + + KPF L +L + +
Sbjct: 61 DGWEVCRRLKKDPITKDIPIIILTARRDERDVIEGLELGADDYVKKPFSLAELHARIKTI 120
Query: 118 LTIKN 122
L +
Sbjct: 121 LRRAH 125
>gi|229155489|ref|ZP_04283597.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
gi|228627807|gb|EEK84526.1| Two-component response regulator vanR [Bacillus cereus ATCC 4342]
Length = 242
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLIQEGFKVFSAHNGEEALEIINKNCIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|164520366|gb|ABY60238.1| PhoP [Listeria monocytogenes]
gi|164520368|gb|ABY60239.1| PhoP [Listeria monocytogenes]
gi|164520370|gb|ABY60240.1| PhoP [Listeria monocytogenes]
gi|164520374|gb|ABY60242.1| PhoP [Listeria monocytogenes]
gi|164520376|gb|ABY60243.1| PhoP [Listeria monocytogenes]
gi|164520382|gb|ABY60246.1| PhoP [Listeria monocytogenes]
gi|164520384|gb|ABY60247.1| PhoP [Listeria monocytogenes]
gi|164520388|gb|ABY60249.1| PhoP [Listeria monocytogenes]
gi|164520394|gb|ABY60252.1| PhoP [Listeria monocytogenes]
gi|164520398|gb|ABY60254.1| PhoP [Listeria monocytogenes]
gi|164520400|gb|ABY60255.1| PhoP [Listeria monocytogenes]
gi|164520402|gb|ABY60256.1| PhoP [Listeria monocytogenes]
gi|164520406|gb|ABY60258.1| PhoP [Listeria monocytogenes]
gi|164520408|gb|ABY60259.1| PhoP [Listeria monocytogenes]
gi|164520414|gb|ABY60262.1| PhoP [Listeria monocytogenes]
gi|164520416|gb|ABY60263.1| PhoP [Listeria monocytogenes]
gi|164520418|gb|ABY60264.1| PhoP [Listeria monocytogenes]
gi|164520422|gb|ABY60266.1| PhoP [Listeria monocytogenes]
gi|164520434|gb|ABY60272.1| PhoP [Listeria monocytogenes]
gi|164520440|gb|ABY60275.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|148257460|ref|YP_001242045.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146409633|gb|ABQ38139.1| two component transcriptional regulator, winged helix family
[Bradyrhizobium sp. BTAi1]
Length = 246
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD + R + K L V + +G + + LL+ D+++P DG+
Sbjct: 7 HILVVEDDRETRTLIAKYLRNNSCNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + ++ +T L KPF+ R+L+ +N +L +
Sbjct: 67 LCRKLRAE-SQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQ 123
>gi|329926464|ref|ZP_08280878.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
gi|328939199|gb|EGG35561.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL EDD+D+ + + L + Y V S +G A ++E F L+L D+++P+++
Sbjct: 1 MQKRILLVEDDNDINQLIESQLKQDHYSVASARDGEEALALFQKEKFDLILLDLMLPKVN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + E + V+ I+ + +SKPF + +L V +
Sbjct: 61 GMELLKHIRE-TSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRR 119
>gi|320449473|ref|YP_004201569.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermus scotoductus SA-01]
gi|320149642|gb|ADW21020.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermus scotoductus SA-01]
Length = 225
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD + L L AG+EV+ +G A + L++ D+++P++DG +
Sbjct: 2 RVLLVDDDPALLEVLGAYLRGAGFEVLEAKDGEKALELFP--RADLIILDLMLPKLDGFK 59
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ P+L ++ +T + KPF +++V V LL
Sbjct: 60 VLEEVRRERPELPILMLTARGEEEERVKGLELGADDYVVKPFSPKEVVARVKALLRR 116
>gi|218289377|ref|ZP_03493611.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|218240483|gb|EED07664.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
Length = 235
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + +FL L + GY V + +G A K RE + + D++MP DG E
Sbjct: 16 RVLVVDDEPSIVKFLEFGLRREGYAVDTARDGVEAIAKARESMPHVCILDVMMPGPDGFE 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + ++ V+ +T A+ + KPF +L+ ++ ++N
Sbjct: 76 VCRMLKSMG-NVAVILLTARDAIDDRVKGLVGGADDYVVKPFSFEELLARIHA--RVRN 131
>gi|307153766|ref|YP_003889150.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
gi|306983994|gb|ADN15875.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
Length = 374
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D + L + G +VV +G +A ++++E L+L D++MP+MDG E+
Sbjct: 15 ILVVDDSPDNLFLIQTILEEQGLKVVLAQDGLAALNRIQESLPKLILLDVMMPKMDGFEV 74
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + P + ++ IT + + + KP + +L+ V LL +K+
Sbjct: 75 TRRIRANENLPFIPILLITAYDQPS-AVKGLDAGADDFIRKPVDVDELLARVRSLLRLKH 133
>gi|170077111|ref|YP_001733749.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
7002]
gi|169884780|gb|ACA98493.1| two-component response regulator (ycf27) [Synechococcus sp. PCC
7002]
Length = 258
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ +RR L L GY++++ +G A D E L++ D++MP+ DG
Sbjct: 13 KATILVVDDEIAVRRILQTRLSMIGYDIITAADGDEALDIFWREDPDLVILDVMMPKRDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ +T VA L KPF ++L + +L
Sbjct: 73 YYVCQEIRRE-SSTPIIMLTALGDVADRITGLRFGADDYLIKPFSPKELEVRIQCILRR 130
>gi|75759474|ref|ZP_00739566.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74493049|gb|EAO56173.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 9 SMRLLVVEDNTSLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPGMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 68 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 126
>gi|299537509|ref|ZP_07050803.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
gi|298727070|gb|EFI67651.1| sensory transduction protein [Lysinibacillus fusiformis ZC1]
Length = 224
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L K G+ + +G A P L++ DI+MP MDG
Sbjct: 3 TILVADDDANIRELVCLFLRKDGFTTMEAGDGKEALAIYGSAPIDLVVLDIMMPTMDGWT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +++ DL ++ +T L+KPF +L V LL
Sbjct: 63 LCKELRKMNTDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVKALLKR 119
>gi|291458665|ref|ZP_06598055.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419198|gb|EFE92917.1| DNA-binding response regulator SrrA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 225
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + K+L+ +D++ MR+ + L +EV+ +G A D E+ SLL+ D++MP+
Sbjct: 1 MEKLKVLVVDDEERMRKLISDFLKAKDFEVLEAADGEEAIDLFFEEKDISLLILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + + E + V+ +T + + +SKPF + LV V LL
Sbjct: 61 MDGWAVLKSIRE-HSRVPVIMLTARSEETDELRGFEYGADEYISKPFSPKILVARVEALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|291007101|ref|ZP_06565074.1| two-component system, response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 241
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL +G+EV GA A E +++ D+++P+ DG
Sbjct: 10 RVLVVDDEPNILELLTAALRLSGFEVRGAATGADALRAASEFGPDIVVLDVMLPDQDGFS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR E + V+F+T AV ++KPF L ++V + +L
Sbjct: 70 VARRLREGGDLVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLDEVVLRLRAILRR 126
>gi|229032881|ref|ZP_04188836.1| DNA-binding response regulator [Bacillus cereus AH1271]
gi|228728426|gb|EEL79447.1| DNA-binding response regulator [Bacillus cereus AH1271]
Length = 223
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A K E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALAKWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKNRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|196041195|ref|ZP_03108490.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196027903|gb|EDX66515.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + + + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQIAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|163816850|ref|ZP_02208213.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
gi|158448107|gb|EDP25102.1| hypothetical protein COPEUT_03040 [Coprococcus eutactus ATCC 27759]
Length = 224
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + L L Y V + NG AYD + + ++ D++MP+MDG
Sbjct: 2 RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQEAYDYIMAGVYDGVILDVMMPKMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ V+ +T + + L+KPF ++L+ + + K+
Sbjct: 62 VLSKIRSEGCDVPVIMLTAKSETDDKINGLDLGADDYLAKPFDTKELLARIRAITRRKS 120
>gi|54297348|ref|YP_123717.1| transcriptional regulatory protein CpxR [Legionella pneumophila
str. Paris]
gi|148358969|ref|YP_001250176.1| transcriptional regulator CpxR [Legionella pneumophila str. Corby]
gi|296107018|ref|YP_003618718.1| two-component system, OmpR family, response regulator CpxR
[Legionella pneumophila 2300/99 Alcoy]
gi|53751133|emb|CAH12544.1| transcriptional regulatory protein CpxR [Legionella pneumophila
str. Paris]
gi|148280742|gb|ABQ54830.1| transcriptional regulatory protein CpxR [Legionella pneumophila
str. Corby]
gi|295648919|gb|ADG24766.1| two-component system, OmpR family, response regulator CpxR
[Legionella pneumophila 2300/99 Alcoy]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD ++ L + L G+ VV ++G + K + F ++ D+++P+++
Sbjct: 1 MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKKALNQVFDAIILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKAIREHL-ETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|67923615|ref|ZP_00517086.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67854539|gb|EAM49827.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 252
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---------PFSLLLT 52
+IL+ ED+D +R ++ AL GYE+ + ++G +A + +++E F LL+
Sbjct: 18 THRILVVEDEDVIRDMIVLALEDEGYEITAVSDGRTALNLLQQEAKNPTATAMEFDLLVL 77
Query: 53 DIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
D+++P+++G+++ R + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 DLMLPQVNGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVA 137
Query: 113 EVNRLLTIK 121
L+ +
Sbjct: 138 RCRALIRRQ 146
>gi|325922699|ref|ZP_08184439.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas gardneri ATCC 19865]
gi|325546816|gb|EGD17930.1| phosphate regulon transcriptional regulatory protein PhoB
[Xanthomonas gardneri ATCC 19865]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDAREAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR + L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKESLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|324324273|gb|ADY19533.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 233
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|257877591|ref|ZP_05657244.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|257811757|gb|EEV40577.1| transcriptional regulator [Enterococcus casseliflavus EC20]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +D+ ++ + L G++V S +G SA + +E + + D+++P++D
Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVESFYDGTSALAYLEKETVDVAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQQIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|229494209|ref|ZP_04387972.1| two component transcriptional regulator, winged helix family
[Rhodococcus erythropolis SK121]
gi|229318571|gb|EEN84429.1| two component transcriptional regulator, winged helix family
[Rhodococcus erythropolis SK121]
Length = 237
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L + G+ V ++G SA VRE +L++ D+++P DG+E
Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGLE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D V+ ++ + A + KPF R+LV V LL
Sbjct: 73 VCRRIR-TFSDAYVLMLSARGDESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128
>gi|228928262|ref|ZP_04091303.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229185421|ref|ZP_04312603.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228598009|gb|EEK55647.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228831309|gb|EEM76905.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|229194250|ref|ZP_04321094.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
gi|228589225|gb|EEK47200.1| hypothetical protein bcere0002_58370 [Bacillus cereus ATCC 10876]
Length = 242
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ ++R L K + + Y+V +G A + + L + D++MP++DGIE
Sbjct: 11 RILIADDEKEIRDLLKKYMERELYKVDVAIDGEHALSLFNKNKYDLFILDLMMPKIDGIE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ +T + ++KPF + ++V V L+
Sbjct: 71 VCRKLREKT-NVPILMLTAKNHETDKILGLSMGADDYITKPFSINEVVARVKALMRR 126
>gi|118479688|ref|YP_896839.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196044910|ref|ZP_03112144.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225866511|ref|YP_002751889.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|118418913|gb|ABK87332.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196024398|gb|EDX63071.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225790658|gb|ACO30875.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|326387442|ref|ZP_08209051.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208098|gb|EGD58906.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ K+LL EDD + + GY+V + +G A E+ L+L D ++
Sbjct: 1 MSAPKLLLVEDDTALAELVEYRFRGEGYDVRTTADGDEALLLAAEDTPDLVLLDWMIGGT 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR + ++ +T + ++KPF R+L+ V +
Sbjct: 61 SGIEVCRRLRRQKATAHVPIIMLTARSDEDDRVRGLETGADDYVTKPFSPRELIARVGAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|312889015|ref|ZP_07748575.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|311298533|gb|EFQ75642.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1377
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ D+R ++ + K Y + NNG Y+ ++E ++++D++MP M GI
Sbjct: 1111 KTLLVIDDNQDIREYIRQVF-KLDYNIYEANNGEEGYELIKEHLPDIVISDVMMPGMSGI 1169
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL E + V+ +T ++ + +SKPF L V LL
Sbjct: 1170 ELCSLVKEDMAISHIPVILLTASSSPEIKLKGIEGGADDYISKPFDKEILKARVTGLLKS 1229
Query: 121 KN 122
+N
Sbjct: 1230 RN 1231
>gi|295106296|emb|CBL03839.1| two component transcriptional regulator, winged helix family
[Gordonibacter pamelaeae 7-10-1-b]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 51/115 (44%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L +DD+ + + + + AGY + +G + +E LLL D++MP M+G ++
Sbjct: 1 MLVDDDESLHVLMRRIVEDAGYAFCAAFDGEEGLALLADEKPDLLLLDVMMPGMNGFDVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E + ++F++ + + KPF +L+ + L
Sbjct: 61 RRMREEGRRIPIVFLSAKGDIVDKSIGFKAGGDDYVVKPFSPDELLLRIEAHLRR 115
>gi|228901707|ref|ZP_04065880.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228857936|gb|EEN02423.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|229152733|ref|ZP_04280917.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
m1550]
gi|228630711|gb|EEK87356.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
m1550]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|229158143|ref|ZP_04286211.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
ATCC 4342]
gi|228625305|gb|EEK82064.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
ATCC 4342]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|218533059|ref|YP_002423875.1| two component transcriptional regulator PhoB, winged helix family
[Methylobacterium chloromethanicum CM4]
gi|240141569|ref|YP_002966049.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens AM1]
gi|254564081|ref|YP_003071176.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens DM4]
gi|218525362|gb|ACK85947.1| two component transcriptional regulator PhoB, winged helix family
[Methylobacterium chloromethanicum CM4]
gi|240011546|gb|ACS42772.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens AM1]
gi|254271359|emb|CAX27372.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens DM4]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED++ + L L G++V G A ++ E L+L D ++P + G
Sbjct: 3 SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL RR L V+ +T + + KPF + +L+ V LL
Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|254415526|ref|ZP_05029286.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196177707|gb|EDX72711.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++LL +D+ +R + L + G + V +N A+ ++++ L++TDI+MP++
Sbjct: 1 MSAQLLLVDDEPGIRESVPAYLEEVGGFTVDVASNANDAWQMLQQKTPDLVITDIMMPQV 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG + ++ E L V+F+T LSKPF +LV V L
Sbjct: 61 DGYQFLKKLREDPRFKSLPVIFLTARGMTTDRIQGYQAGCDAYLSKPFDTDELVAIVENL 120
Query: 118 LTIK 121
L +
Sbjct: 121 LERR 124
>gi|153932013|ref|YP_001382767.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153936832|ref|YP_001386318.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|152928057|gb|ABS33557.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152932746|gb|ABS38245.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D+ ++R + L GY + +NG A + ++ L++ DI+MP+M
Sbjct: 1 MSAEKILIVDDEKEIRDLIDIYLTNEGYITLKSSNGIEALELLKTNNVHLIILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE + E + ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGIEACMKIREEKS-MPIIMLSAKSEDMDKIIGLTTGADDYITKPFNPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|33416267|ref|NP_878013.1| vancomycin response regulator VanR [Staphylococcus aureus]
gi|121633842|ref|YP_976080.1| VanR protein [Enterococcus faecium]
gi|124112009|ref|YP_001019038.1| VanR protein [Enterococcus faecium]
gi|190606514|ref|YP_001974799.1| VanR protein [Enterococcus faecium]
gi|197103114|ref|YP_002128396.1| VanR protein [Enterococcus faecium]
gi|256965580|ref|ZP_05569751.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
gi|257880769|ref|ZP_05660422.1| transcription regulator [Enterococcus faecium 1,230,933]
gi|257883393|ref|ZP_05663046.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
gi|257891275|ref|ZP_05670928.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
gi|293384653|ref|ZP_06630512.1| regulatory protein VanR [Enterococcus faecalis R712]
gi|293387045|ref|ZP_06631612.1| regulatory protein VanR [Enterococcus faecalis S613]
gi|293567296|ref|ZP_06678649.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
gi|294617747|ref|ZP_06697365.1| regulatory protein VanR [Enterococcus faecium E1679]
gi|305678704|ref|YP_003864123.1| VanR [Enterococcus faecalis]
gi|312907837|ref|ZP_07766825.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
gi|312979123|ref|ZP_07790833.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
gi|313247850|ref|YP_004033012.1| two component regulator protein [Enterococcus faecalis]
gi|314944050|ref|ZP_07850716.1| regulatory protein VanR [Enterococcus faecium TX0133C]
gi|314949575|ref|ZP_07852901.1| regulatory protein VanR [Enterococcus faecium TX0082]
gi|314995084|ref|ZP_07860203.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
gi|320152796|ref|YP_004172619.1| VanR [Enterococcus faecium]
gi|586203|sp|Q06239|VANR_ENTFC RecName: Full=Regulatory protein vanR
gi|21886739|gb|AAM77882.1|AF516335_2 cytoplasmic regulator [Enterococcus faecium]
gi|148327|gb|AAA24787.1| vancomycin response regulator [Enterococcus faecium]
gi|148332|gb|AAA24790.1| vanR [Enterococcus faecium]
gi|155039|gb|AAA65953.1| vanR [Enterococcus faecium]
gi|33390951|gb|AAQ17157.1| vancomycin response regulator VanR [Staphylococcus aureus]
gi|60391955|gb|AAX19281.1| transcriptional response regulator [Paenibacillus thiaminolyticus]
gi|110556107|dbj|BAE98126.1| vanR [Enterococcus faecalis]
gi|121490901|emb|CAL36537.1| VanR protein [Enterococcus faecium]
gi|124012111|emb|CAL90943.1| VanR protein [Enterococcus faecium]
gi|186886502|gb|ACC93630.1| VanR [Enterococcus faecium]
gi|190350284|emb|CAP62634.1| VanR protein [Enterococcus faecium]
gi|196158936|emb|CAP70011.1| VanR protein [Enterococcus faecium]
gi|227069719|gb|ACP19233.1| response regulator VanR [Enterococcus faecium]
gi|256956076|gb|EEU72708.1| vancomycin response regulator VanR [Enterococcus faecalis HIP11704]
gi|257814997|gb|EEV43755.1| transcription regulator [Enterococcus faecium 1,230,933]
gi|257819051|gb|EEV46379.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,502]
gi|257827635|gb|EEV54261.1| vancomycin response regulator VanR [Enterococcus faecium 1,231,410]
gi|281335163|gb|ADA62247.1| vancomycin response regulator [Enterococcus faecium]
gi|283481157|emb|CAZ67068.1| VanR protein [Enterococcus faecium]
gi|291078047|gb|EFE15411.1| regulatory protein VanR [Enterococcus faecalis R712]
gi|291083530|gb|EFE20493.1| regulatory protein VanR [Enterococcus faecalis S613]
gi|291590004|gb|EFF21799.1| vancomycin response regulator VanR [Enterococcus faecium E1071]
gi|291595993|gb|EFF27268.1| regulatory protein VanR [Enterococcus faecium E1679]
gi|304324955|gb|ADM24835.1| VanR [Enterococcus faecalis]
gi|304324997|gb|ADM24876.1| VanR [Enterococcus faecalis]
gi|304325039|gb|ADM24917.1| VanR [Enterococcus faecalis]
gi|310626169|gb|EFQ09452.1| regulatory protein VanR [Enterococcus faecalis DAPTO 512]
gi|311288087|gb|EFQ66643.1| regulatory protein VanR [Enterococcus faecalis DAPTO 516]
gi|312837017|dbj|BAJ34903.1| two component regulator protein [Enterococcus faecalis]
gi|313590687|gb|EFR69532.1| regulatory protein VanR [Enterococcus faecium TX0133a01]
gi|313597355|gb|EFR76200.1| regulatory protein VanR [Enterococcus faecium TX0133C]
gi|313644055|gb|EFS08635.1| regulatory protein VanR [Enterococcus faecium TX0082]
gi|319739748|gb|ADV60066.1| VanR [Enterococcus faecium]
gi|383762|prf||1904198A vanR gene
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ + L Y V A + + + L + DI++P
Sbjct: 1 MSDKILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +TG ++KPF +L+ V L
Sbjct: 61 GLTICQKIRDKH-TYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|330957938|gb|EGH58198.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 227
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ + LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|229124382|ref|ZP_04253570.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228659034|gb|EEL14686.1| Two-component response regulator [Bacillus cereus 95/8201]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|255530119|ref|YP_003090491.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255343103|gb|ACU02429.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL EDD ++ L L G ++VV C +G ++ F L + D++MP+ DG
Sbjct: 2 KRILLVEDDPNLGLLLQDYLQLKGKFDVVLCADGEEGLKAFSKQEFDLCILDVMMPKKDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +++ ++ ++F T A + + ++KPF + +L+ +N LL
Sbjct: 62 FTLGKEIRKINQEVPIIFATAKAMMEDKASAYDLGGDDYITKPFRIEELLLRINALLKR 120
>gi|254391205|ref|ZP_05006411.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294813637|ref|ZP_06772280.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197704898|gb|EDY50710.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294326236|gb|EFG07879.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 279
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V S +GA A + RE ++ D+ +P+MDG+
Sbjct: 54 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGLT 113
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R P++ V+F+T AV ++KPF L ++V + L+
Sbjct: 114 LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 170
>gi|149372308|ref|ZP_01891496.1| two-component system, transcriptional regulatory protein
[unidentified eubacterium SCB49]
gi|149354698|gb|EDM43261.1| two-component system, transcriptional regulatory protein
[unidentified eubacterium SCB49]
Length = 238
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y V NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLAMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNAEVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124
>gi|123965391|ref|YP_001010472.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
gi|123199757|gb|ABM71365.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
Length = 260
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRELVAGHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|119486033|ref|ZP_01620095.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with Response Regulator Receiver modulation
[Lyngbya sp. PCC 8106]
gi|119456808|gb|EAW37936.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with Response Regulator Receiver modulation
[Lyngbya sp. PCC 8106]
Length = 601
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D R L L GYEV NG A V+ P SL+L DI+MP++DG E+
Sbjct: 13 ILIVDDTPMNLRLLSTMLSDQGYEVRQAINGKMALTAVQTCPPSLILLDIMMPDIDGYEV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
D+ ++F++ V + ++KPF +++ V L +K+
Sbjct: 73 CSFLKNDPQTADIPIIFLSALDDVLDKVKAFKVGGVDYITKPFEFEEILARVKNQLALKD 132
>gi|331090913|ref|ZP_08339756.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
gi|330405467|gb|EGG85000.1| regulatory protein vanR [Lachnospiraceae bacterium 2_1_46FAA]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ ++ L L G+EV G A D +R L + DI++P++D
Sbjct: 1 MKKQILIVDDEKEIADLLEVYLQNDGFEVHKYYTGKEAMDCIRTTRLDLAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E V+ +T A + KPF+ +++ V L
Sbjct: 61 GFTICQKIREKYFY-PVIMLTAKVEDADKILGLTLGADDYILKPFNPLEVLARVKTQLRR 119
>gi|327470410|gb|EGF15866.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|254785020|ref|YP_003072448.1| alkaline phosphatase synthesis PhoB family transcriptional
regulator [Teredinibacter turnerae T7901]
gi|237686037|gb|ACR13301.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Teredinibacter turnerae T7901]
Length = 233
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED +++ + L Y V +G + F L++ D+++P +D
Sbjct: 1 MAENILVIEDQEEINELIALNLETLNYTVTRALDGDIGLNLSLNTRFDLIILDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ ++ +T + A L+KPF +R+L V LL
Sbjct: 61 GLQICQKLRSAGVLTPILMLTAKKSEADRVVGLEVGADDYLTKPFSVRELQARVRALLRR 120
>gi|152974334|ref|YP_001373851.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023086|gb|ABS20856.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 223
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M + L L GY + +G A + V+++ F ++L D++MP MDG E
Sbjct: 3 KILLIDDEERMLQLLDLFLSPRGYFCMKAKSGFEALELVQQKEFDIILLDVMMPNMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +L ++ ++ +T ++KPF + LV + +L
Sbjct: 63 TCKQIRQL-SNVPIIMLTARNQNYDMIKGLTIGADDYITKPFDEQVLVARIEAVLRR 118
>gi|88800114|ref|ZP_01115683.1| possible baeR; Response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain [Reinekea
sp. MED297]
gi|88777095|gb|EAR08301.1| possible baeR; Response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain [Reinekea
sp. MED297]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ + L AGYEV ++G A + +R+ L+L D+++P D
Sbjct: 1 MTQHILVIEDEFQIAAIHRDYLNAAGYEVTCLDDGTQAVEWIRDNTPDLILLDLMLPVKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++ +T + KPF R++V V +L
Sbjct: 61 GHTICQEVRQ-FSNVPIIMVTAKVDEIDRLLGLEQGADDYICKPFSAREVVARVRAVLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|30264882|ref|NP_847259.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47530368|ref|YP_021717.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49187698|ref|YP_030951.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65322181|ref|ZP_00395140.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165869682|ref|ZP_02214340.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167633982|ref|ZP_02392305.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167638026|ref|ZP_02396304.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170685995|ref|ZP_02877218.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170705430|ref|ZP_02895894.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177651313|ref|ZP_02934144.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190567181|ref|ZP_03020096.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196032754|ref|ZP_03100167.1| DNA-binding response regulator [Bacillus cereus W]
gi|218906044|ref|YP_002453878.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227817609|ref|YP_002817618.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228917471|ref|ZP_04081020.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929866|ref|ZP_04092881.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229604412|ref|YP_002869087.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254687622|ref|ZP_05151478.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254725188|ref|ZP_05186971.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254736926|ref|ZP_05194632.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741961|ref|ZP_05199648.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254754441|ref|ZP_05206476.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254757274|ref|ZP_05209301.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30259557|gb|AAP28745.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47505516|gb|AAT34192.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49181625|gb|AAT57001.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164714511|gb|EDR20030.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167513843|gb|EDR89211.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530783|gb|EDR93485.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170129555|gb|EDS98418.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170670459|gb|EDT21199.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172083139|gb|EDT68201.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190561685|gb|EDV15655.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195994183|gb|EDX58138.1| DNA-binding response regulator [Bacillus cereus W]
gi|218538505|gb|ACK90903.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|227006263|gb|ACP16006.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228829782|gb|EEM75404.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842143|gb|EEM87242.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268820|gb|ACQ50457.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|320094688|ref|ZP_08026444.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319978373|gb|EFW09960.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 241
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R L +L AG++V + +G+SA+ + + L++ D+++P+MDG
Sbjct: 16 KLLVVDDEPNIRDLLASSLRFAGFDVSTAEDGSSAFHEAQAVRPDLIVLDVMLPDMDGFT 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T + ++KPF L ++V + +L
Sbjct: 76 VTRRLRDAGLTTPVLFLTARDDMRDKIQGLTVGGDDYVTKPFGLEEVVARIRAILRR 132
>gi|308068910|ref|YP_003870515.1| regulatory protein vanR [Paenibacillus polymyxa E681]
gi|305858189|gb|ADM69977.1| Regulatory protein vanR [Paenibacillus polymyxa E681]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD+++ + + K+L + ++S +G A + E ++ DIVMP+MD
Sbjct: 1 MPKTILVVDDDEEIVKLITKSLRYEQFAIISACSGKEALSALEENHIDFIVLDIVMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ R ++ ++F++ ++KPF +++LV+ +
Sbjct: 61 GLDVCRSIRNSY-NVPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELVSRIKAHFR 118
>gi|302335808|ref|YP_003801015.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
gi|301319648|gb|ADK68135.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +L+ +D ++ + LG G +C++G SA ++ E + L++ DI+MP +D
Sbjct: 1 MSEHVLVVDDSREIADLVTTLLGAEGIHADACHDGESALERFAERGYGLVILDIMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + V+F++ + + ++KPF +L+ V L
Sbjct: 61 GWEVCRRIR-RTSAVPVLFLSAKSEEMDVVRGFSLDADDYITKPFKPFELIARVKARLRR 119
>gi|257877070|ref|ZP_05656723.1| two component transcriptional regulator [Enterococcus casseliflavus
EC20]
gi|257811236|gb|EEV40056.1| two component transcriptional regulator [Enterococcus casseliflavus
EC20]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL ED+ + + L K Y V +G + D + LL+ DI++P++DGI
Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + V L+KPF +++L+ + L K+
Sbjct: 62 LLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120
>gi|164520380|gb|ABY60245.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|119483258|ref|ZP_01618672.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
8106]
gi|119458025|gb|EAW39147.1| PAS sensor diguanylate cyclase/phophodiesterase [Lyngbya sp. PCC
8106]
Length = 753
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D +FL +L +A YEV+ G SA + + L++ DI MPEMDG E+
Sbjct: 11 VLVVDDYPLNLKFLCASLSRAKYEVLVAQTGESALEIAVSQQPELIVLDIRMPEMDGYEV 70
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ D+ V+F+T + A ++KP H + ++ + L+++
Sbjct: 71 CRQLKASPVTRDIPVIFMTALSETDNKVKGLKLGAADYITKPIHPEEALSRIQTHLSVR 129
>gi|118594517|ref|ZP_01551864.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
gi|118440295|gb|EAV46922.1| osmolarity response regulator [Methylophilales bacterium HTCC2181]
Length = 238
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +I L +DD +R K L G VV+ +NGA + +L++ D++MPE G
Sbjct: 7 SAQIALVDDDPKIRELTAKYLSDQGLSVVTASNGAELDELRINYNINLIVLDLMMPEESG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ +R D ++ +T L KPF+ R+L+ +N ++ +
Sbjct: 67 LEVCQRLRVNKIDTPIIMLTAKGDEVDRIVGLEMGADDYLPKPFNPRELLARINAIIRRQ 126
>gi|114561499|ref|YP_749012.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114332792|gb|ABI70174.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 228
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL +DD + L + L G+ + +G +++ F L+L D+++P+++
Sbjct: 1 MN-RILLIDDDIGLSDLLSQLLELEGFVLTQAYDGEQGLMMAQQQDFDLILLDVMLPKLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T L KPF+ R+LV + +L
Sbjct: 60 GFEVLRALRQR-KQTPILMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAILRR 118
>gi|291525698|emb|CBK91285.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
gi|291528177|emb|CBK93763.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 232
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ EDD +R L L GY + ++G K F LL+ DI+MP +
Sbjct: 1 MN-KLLIIEDDVTIRNALRILLENQGYFIEEAHDGEEGLQKFDS-TFDLLIIDIMMPNIS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R+ E + ++F+T + ++ + L KPF +L+ + L+
Sbjct: 59 GIDVCRKIREK-SYVPILFLTAKSLETDKMEALSAGGDDYLVKPFSYVELIARIQALIRR 117
>gi|229020065|ref|ZP_04176847.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229026294|ref|ZP_04182653.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228735010|gb|EEL85646.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228741222|gb|EEL91438.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 229
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + + ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSGVPIIMLTARVDEDDTLLGFELGADDYVAKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229032183|ref|ZP_04188158.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1271]
gi|228729140|gb|EEL80141.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1271]
Length = 230
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|229090890|ref|ZP_04222118.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
gi|228692499|gb|EEL46230.1| Two-component response regulator vanR [Bacillus cereus Rock3-42]
Length = 242
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINYNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|261419917|ref|YP_003253599.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319766731|ref|YP_004132232.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261376374|gb|ACX79117.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317111597|gb|ADU94089.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D++ M L L GY V +GA A D +R L+L D++MPE+DG E
Sbjct: 3 TLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ +M +T A ++KPF +L+ + +L
Sbjct: 63 TCRRIRS-FSNVPIMMVTARDETADIVQGLKIGADDYVTKPFDEAELLARIEAVLRR 118
>gi|254415722|ref|ZP_05029480.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196177428|gb|EDX72434.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 974
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 59/129 (45%), Gaps = 7/129 (5%)
Query: 1 MNQK----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIV 55
M++ IL+ +D+ + + L Y +V +G A K+ + L++ DI+
Sbjct: 572 MSKTGEFTILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILDIM 631
Query: 56 MPEMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
MP+M G E+ ++ + P ++ ++ +T V+ + + L+KP +L+
Sbjct: 632 MPKMSGYEVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELIAR 691
Query: 114 VNRLLTIKN 122
+ L + N
Sbjct: 692 IKTHLHLSN 700
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 1 MNQKILLAEDDDD----MRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIV 55
M KIL+ +D+ D +R+ K + + + + +NG A + + +P ++LTDI
Sbjct: 1 MPAKILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDIN 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
MPEMDG+ L + P K + ++ + + + L+KP +DL
Sbjct: 61 MPEMDGLTLLTHLAQDYPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPIDFQDL 115
>gi|126695485|ref|YP_001090371.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
gi|126542528|gb|ABO16770.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
Length = 260
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|42784424|ref|NP_981671.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|229158824|ref|ZP_04286882.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
gi|42740356|gb|AAS44279.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|228624808|gb|EEK81577.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
Length = 223
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|325104532|ref|YP_004274186.1| histidine kinase [Pedobacter saltans DSM 12145]
gi|324973380|gb|ADY52364.1| histidine kinase [Pedobacter saltans DSM 12145]
Length = 1368
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D+ ++ FL L K Y+V NG A D + + F L+++D++MPE+DG
Sbjct: 1116 KEKLLVVDDNYEIVDFLSSHLNK--YQVAVAYNGKQALDILENDSFDLIISDVMMPEIDG 1173
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL- 118
I+L ++ + + V+ +T ++KPF + L +V +L
Sbjct: 1174 IQLCKKIKQNINTCHIPVILLTAKNETQHQIKGLEAGADDYVTKPFSMSLLTAKVQSILK 1233
Query: 119 -TIK 121
+
Sbjct: 1234 SRRR 1237
>gi|293376525|ref|ZP_06622753.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
gi|325845461|ref|ZP_08168752.1| response regulator ArlR [Turicibacter sp. HGF1]
gi|292644751|gb|EFF62833.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
gi|325488480|gb|EGC90898.1| response regulator ArlR [Turicibacter sp. HGF1]
Length = 226
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + + L Y+V ++G S D + L++ DI++P+++G +
Sbjct: 2 RILVVEDEIRLAEAISQILKTNKYDVDVFHDGQSGLDYALTGIYDLIILDIMLPKLNGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++F+T +A L+KPF +L+ + LL +
Sbjct: 62 ILKMCRQDKIKTPILFLTAKDEIADKVRGLDLGADDYLTKPFATEELLARIRVLLRRQ 119
>gi|229062220|ref|ZP_04199542.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH603]
gi|228717048|gb|EEL68727.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH603]
Length = 239
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G++V ++G + + F L++ DI+MP++D
Sbjct: 10 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNAFLKGSFDLIILDIMMPKLD 69
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 70 GLEVVRIIREK-SAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRR 128
>gi|188996277|ref|YP_001930528.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931344|gb|ACD65974.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 231
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + EDD+D+ L K G++V S NG A++ +++E +++ D++MPE+DG+E
Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDGLEF 63
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T + ++KPF R+L+ V LL
Sbjct: 64 CKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLRR 121
>gi|149910657|ref|ZP_01899294.1| DNA-binding response regulator [Moritella sp. PE36]
gi|149806284|gb|EDM66260.1| DNA-binding response regulator [Moritella sp. PE36]
Length = 234
Score = 147 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED D+ + L G +V C+N A+ ++R+ F L+L D+ +P+MD
Sbjct: 1 MDTHVLVVEDQQDIANLIRINLEMIGKKVTCCHNAKDAFQQLRDNVFQLILLDLNLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ D + +M +T L+KPF + +L V LL
Sbjct: 61 GLDICKKIRINDAIVPIMMLTARTEELDRVQGLEAGADDYLAKPFSVLELQARVKALLRR 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|330966402|gb|EGH66662.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 254
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D +R L L + ++V + + A + +R++PF +++ D+++P+ DG E
Sbjct: 12 RVLVVDDHRKIRDPLAVYLRRHLFDVRTAEDAAGMWQLLRQQPFDVVVLDVMLPDGDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ V+ +T A L+KPF R+LV +N +L +
Sbjct: 72 LCSRLHRRE-NIPVILLTARDTSADRVRGLDIGADDYLTKPFEPRELVARINSVLRRR 128
>gi|320160341|ref|YP_004173565.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319994194|dbj|BAJ62965.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 234
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL +DD MRR L L +AG++V + + + P L+L DI +P MD
Sbjct: 1 MSKSILLIDDDALMRRSLGFNLEQAGFQVFTAASAEDGLVLAKRTPPDLVLLDINLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ RR E V+F+T ++KPF L+ + +L
Sbjct: 61 GLDALRRFREE-VGAPVIFVTARRRELDQVLGLELGADDYITKPFDFNILLARIKAVLRR 119
>gi|318056745|ref|ZP_07975468.1| putative two-component system response regulator [Streptomyces sp.
SA3_actG]
gi|318080955|ref|ZP_07988287.1| putative two-component system response regulator [Streptomyces sp.
SA3_actF]
Length = 225
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A R+ L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + V+ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|255013596|ref|ZP_05285722.1| two-component system response regulator [Bacteroides sp. 2_1_7]
gi|262381792|ref|ZP_06074930.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298375645|ref|ZP_06985602.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
gi|262296969|gb|EEY84899.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298268145|gb|EFI09801.1| DNA-binding response regulator CzrR [Bacteroides sp. 3_1_19]
Length = 225
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++
Sbjct: 3 KILLVEDEINIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|153873722|ref|ZP_02002207.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Beggiatoa sp. PS]
gi|152069810|gb|EDN67791.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Beggiatoa sp. PS]
Length = 299
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++ ILL +D + L L K +E++ +G A + V + L+L D++MP+
Sbjct: 141 MPKRPKILLVDDMPANIKVLFTFLKKQNFELLIAEDGEMALESVLWDHPDLILLDVMMPK 200
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ +R E D+ V+F+T + +SKPF + +++ +
Sbjct: 201 MDGFEVCQRLKENEKTKDIPVIFMTALSDTIDKIKGFKLGAVDYISKPFDVEEVLLRIKT 260
Query: 117 LLTIKN 122
LTI +
Sbjct: 261 HLTIHH 266
>gi|149908632|ref|ZP_01897294.1| transcriptional regulator CpxR [Moritella sp. PE36]
gi|149808466|gb|EDM68403.1| transcriptional regulator CpxR [Moritella sp. PE36]
Length = 288
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL +DD ++ L + L ++V ++G + +R + ++L D++MP+++
Sbjct: 62 MT-KLLLIDDDRELAELLAEFLSLEDFDVDMVHDGEAGLAAIRGNQYDMVLLDVMMPKLN 120
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ +D ++ V+ +T L KPF R+L+ + +L
Sbjct: 121 GFEVLKKLR-VDNNIPVLMLTAKGDEIDRVLGLEMGADDYLPKPFSERELLARIRAVLRR 179
>gi|319781533|ref|YP_004141009.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167421|gb|ADV10959.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ +R+ L LG GY + N +A + + E L+L D+ +P M G
Sbjct: 5 NVRILVVDDEPPIRKLLRVGLGSQGYAISEAPNARAAIELMEAEKPDLVLLDLGLPGMSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL R+ + D+ V+ ++ A + ++KPF + +LV + L K
Sbjct: 65 HELLRKWRDDGLDIPVVILSSRTDEAGIVQALELGADDYVTKPFGMNELVARIRVALRHK 124
>gi|291536113|emb|CBL09225.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
Length = 224
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+D +R + K GYE+ ++G A + R+E F L++ D++MPE+DG
Sbjct: 2 ERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ V+ ++ + KPF R+L+ V +++ N
Sbjct: 62 STCREIRK-FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNN 120
>gi|262401680|ref|ZP_06078246.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
RC586]
gi|262352097|gb|EEZ01227.1| chitin catabolic cascade sensor histidine kinase ChiS [Vibrio sp.
RC586]
Length = 1112
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ R L L GY V + +G + V+ E LLL DI+MP M G ++
Sbjct: 708 LVADDEPVNLRVLDSFLRLEGYRVHTVQDGNEVLEAVKREKPELLLLDIMMPGMSGYQVC 767
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +L ++ +T LSKPF+ ++L + LT
Sbjct: 768 EKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELAARIIAHLT 823
>gi|257868062|ref|ZP_05647715.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257874392|ref|ZP_05654045.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257876951|ref|ZP_05656604.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
gi|257802145|gb|EEV31048.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808556|gb|EEV37378.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257811117|gb|EEV39937.1| DNA binding response regulator [Enterococcus casseliflavus EC20]
Length = 222
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD MR + GY +G +K+ F L+L D++MP DG
Sbjct: 2 QKILIVDDDTHMRALVKTYAEIEGYLCFEAADGKETLEKLTNHSFDLILLDVMMPGKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ IT ++KPF ++L+ + +L +
Sbjct: 62 QTLSEIRG-SCNTPVIMITARKEEYDKLFGFNLGADDYIAKPFSPKELMARIKAVLKRSS 120
>gi|302873161|ref|YP_003841794.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307688674|ref|ZP_07631120.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302576018|gb|ADL50030.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+A+D+ ++ + L + K + V+ +G A K L+L DI+MP +D
Sbjct: 1 MDRNILIADDNFEIIKILKPYIEKENFNVIFAFDGEEALLKFDHYNPQLVLLDIMMPLID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R E + ++ IT + A + KPF ++V + +L
Sbjct: 61 GIEVCNRIREK-SNTPIIMITAKSEDADKILGLNSGADDYIIKPFSPGEVVARIKAVLRR 119
>gi|222054627|ref|YP_002536989.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
gi|221563916|gb|ACM19888.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. FRC-32]
Length = 454
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +DD +RR L L + GYEV++ +G + E L++TD+ MP +
Sbjct: 1 MTAKILLIDDDTSLRRVLEYNLQEEGYEVITAVDGETGLALFNEHSPPLVITDLKMPGIT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ E P V+ IT F A+ ++ ++KPF+ L V + L +
Sbjct: 61 GFQVLSTIKERSPATLVIVITAFGAIDTAIEAMKLGAHDYITKPFNRDQLKLVVKKALEL 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|33336059|gb|AAQ12900.1| response regulator protein [Enterococcus faecium]
Length = 220
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+
Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D ++ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR 119
>gi|73538429|ref|YP_298796.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase A, N-terminal [Ralstonia
eutropha JMP134]
gi|72121766|gb|AAZ63952.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Ralstonia
eutropha JMP134]
Length = 396
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD + RR L + L K GY + +G + + L++ D+++ D
Sbjct: 1 MPGHVLIVDDDAETRRLLREYLQKQGYRATAVADGRALRAALGTARPDLIVLDLMLAGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R +L ++ +T + KPF+ R+L+ + +L
Sbjct: 61 GLELCRDLR-TRSNLPIIMLTARDEETDRVVGLEMGADDYVVKPFNPRELLARIKSVLRR 119
>gi|291442113|ref|ZP_06581503.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291345008|gb|EFE71964.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 228
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+RR + L G+EV + G +++ +++ D+++P M G++
Sbjct: 3 RVLIVEDDLDVRRAVQLGLRHQGHEVFAVETGEEGLEQLLPFRPDVVVLDLMLPGMSGLD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + D + ++ +T + KP R L + +L ++
Sbjct: 63 VCRRIRDRD-QVPIIMVTARGDDVDVVVGLETGADDYVVKPVQARVLDARIRAVLRRQD 120
>gi|260888709|ref|ZP_05899972.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
35185]
gi|330839889|ref|YP_004414469.1| two component transcriptional regulator, winged helix family
[Selenomonas sputigena ATCC 35185]
gi|260861578|gb|EEX76078.1| DNA-binding response regulator YycF [Selenomonas sputigena ATCC
35185]
gi|329747653|gb|AEC01010.1| two component transcriptional regulator, winged helix family
[Selenomonas sputigena ATCC 35185]
Length = 254
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ ED+ + RFL L G+E S NG AY+++ +E + L+L DI++P+MDG+E+
Sbjct: 31 IMIVEDERRIARFLQMELEHEGFETESEENGRRAYERIVQEQYDLVLLDIMLPDMDGLEV 90
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E+ D+ ++ +T V + ++KPF +++L+ V + +
Sbjct: 91 CRRVREI-SDVPIIMLTAKDDVEDKVNGLDIGADDYITKPFAIQELLARVRAAIRV 145
>gi|228900485|ref|ZP_04064711.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
4222]
gi|228964897|ref|ZP_04126002.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228794835|gb|EEM42336.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228859162|gb|EEN03596.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
4222]
Length = 242
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRVREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|229163529|ref|ZP_04291479.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
R309803]
gi|228619911|gb|EEK76787.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
R309803]
gi|324328428|gb|ADY23688.1| two-component response regulator ycbL [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|218896838|ref|YP_002445249.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218543555|gb|ACK95949.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 232
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRVREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|187735605|ref|YP_001877717.1| two component transcriptional regulator, winged helix family
[Akkermansia muciniphila ATCC BAA-835]
gi|187425657|gb|ACD04936.1| two component transcriptional regulator, winged helix family
[Akkermansia muciniphila ATCC BAA-835]
Length = 234
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+AEDD + + L +AG+ ++ +G +A + R + L+L D +MP MDG
Sbjct: 3 TILIAEDDHAISDLVAYNLERAGHTPLAAYDGLTALEVARRDKPELILLDQMMPGMDGHG 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+F+T A ++KPF ++LV V +L
Sbjct: 63 VLRELRRDSRTQNIPVIFLTAKAQAEDRIQGLELGADDYVTKPFSPKELVLRVASVLKR 121
>gi|90580895|ref|ZP_01236697.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
gi|90437966|gb|EAS63155.1| transcriptional regulatory protein CpxR [Vibrio angustum S14]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L L G++V+ NNG +KV + L+L D++MP M+G E
Sbjct: 3 KILLVDDDIELTALLKDILELEGFDVIEANNGQQGLEKV-DNSIDLILLDVMMPVMNGTE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E VM +T L KPF R+L+ + +L
Sbjct: 62 MLRRLREAHS-TPVMMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARIRAVLRR 117
>gi|154244160|ref|YP_001415118.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154158245|gb|ABS65461.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 233
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L GY V S G A ++RE L++ D ++P +
Sbjct: 1 MPAHILIVEDEEPLTLLLRYNLESEGYGVESVGRGDEAETRLRESVPDLVILDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L V+ +T A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|328957344|ref|YP_004374730.1| two-component response regulator [Carnobacterium sp. 17-4]
gi|328673668|gb|AEB29714.1| two-component response regulator [Carnobacterium sp. 17-4]
Length = 241
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+D +RR L L + Y + +NG A E + L+L D+++P+MDGI+
Sbjct: 7 HLLVVDDEDRIRRLLKMYLERENYVISEADNGEDAVKMALENDYDLILLDLMLPKMDGIQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A + E + +M +T + + KPF R++V V+ +L
Sbjct: 67 AAEKIRE-SKNTPIMMLTAKGEEVSRIEGFEVGADDYIVKPFSPREVVLRVSAILKR 122
>gi|255319403|ref|ZP_05360619.1| transcriptional regulator protein [Acinetobacter radioresistens
SK82]
gi|262380867|ref|ZP_06074018.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
gi|255303539|gb|EET82740.1| transcriptional regulator protein [Acinetobacter radioresistens
SK82]
gi|262297502|gb|EEY85420.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
Length = 228
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + L G+EV ++G AYD + SL++ D+++P MDG+
Sbjct: 2 KHVMLVEDEVELAGLVRDYLEAGGFEVSVFHDGQEAYDHFLQRKPSLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E D+ ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDIPIIMVTARTEEIDRVLGLNMGADDYICKPFSPKELVARVQAVLRR 118
>gi|255327693|ref|ZP_05368759.1| two component transcriptional regulator, winged helix family
[Rothia mucilaginosa ATCC 25296]
gi|255295367|gb|EET74718.1| two component transcriptional regulator, winged helix family
[Rothia mucilaginosa ATCC 25296]
Length = 227
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L LG+ G++ + +NG A E L+L D+++P M
Sbjct: 1 MS-KILIVEDEEALSDPLAFLLGREGFQTIVVDNGLDALPVFDREGADLVLLDVMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ E+ + ++ +T + ++KP+ R+L+ + +L
Sbjct: 60 GMEVCRKLREV-SSVPIIMLTAKDSELDKVLGLELGADDYVTKPYSARELIARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 RS 120
>gi|237718181|ref|ZP_04548662.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|260174609|ref|ZP_05761021.1| two-component system response regulator [Bacteroides sp. D2]
gi|293371072|ref|ZP_06617612.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|315922873|ref|ZP_07919113.1| two-component system response regulator [Bacteroides sp. D2]
gi|229452602|gb|EEO58393.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|292633841|gb|EFF52390.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|313696748|gb|EFS33583.1| two-component system response regulator [Bacteroides sp. D2]
Length = 224
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++G+E
Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDEPFDLLILDIIMPKINGLE 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|228907600|ref|ZP_04071457.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
200]
gi|228852092|gb|EEM96889.1| Two-component response regulator vanR [Bacillus thuringiensis IBL
200]
Length = 242
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRVREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|228988075|ref|ZP_04148175.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771645|gb|EEM20111.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 229
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEIDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229171355|ref|ZP_04298940.1| Two-component response regulator [Bacillus cereus MM3]
gi|228612059|gb|EEK69296.1| Two-component response regulator [Bacillus cereus MM3]
Length = 229
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|168177980|ref|ZP_02612644.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226947863|ref|YP_002802954.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|182671519|gb|EDT83493.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226844534|gb|ACO87200.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA E + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119
>gi|324991294|gb|EGC23227.1| DNA-binding response regulator [Streptococcus sanguinis SK353]
Length = 234
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|294630229|ref|ZP_06708789.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
gi|292833562|gb|EFF91911.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
Length = 269
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160
>gi|260687106|ref|YP_003218240.1| two-component response regulator [Clostridium difficile R20291]
gi|260213123|emb|CBE04540.1| two-component response regulator [Clostridium difficile R20291]
Length = 247
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 18 MN-KILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + L ++ T L+KPF + +L+ + L+
Sbjct: 77 GFETLEEIRKEYS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 135
>gi|312135502|ref|YP_004002840.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
gi|311775553|gb|ADQ05040.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
Length = 234
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ + +D+ D+ + + L + GY V + +G S + + +++ DI++P++DG E
Sbjct: 5 TVYVVDDEKDILDLVSEYLTQKGYAVKTFGSGESFLGEFEKSEPDIVILDIMLPDIDGYE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + D+ ++ ++ + +SKPF L +L + ++L
Sbjct: 65 ICKRIRK-NSDVPIIMLSAKGEELDKVLGLELGSDDYISKPFSLSELEARIRKILRR 120
>gi|229158434|ref|ZP_04286496.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228625041|gb|EEK81806.1| Two-component response regulator [Bacillus cereus ATCC 4342]
Length = 229
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|269128240|ref|YP_003301610.1| winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268313198|gb|ACY99572.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length = 225
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E ++G A + RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDLALAEMLGIVLRGEGFEPSFVHDGDKALEAFRETRPDLVLLDLMLPGAD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R+ + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVCRQIRAE-SGVPIVMLTAKSDTVDVVLGLESGADDYIVKPFKPKELVARMRARLRR 119
>gi|227500882|ref|ZP_03930931.1| two component response regulator [Anaerococcus tetradius ATCC
35098]
gi|227216986|gb|EEI82371.1| two component response regulator [Anaerococcus tetradius ATCC
35098]
Length = 223
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + R L + L GY + ++G A D E + +++ DI +P+ DG E
Sbjct: 2 KVLIVEDEKKLLRLLEEGLNILGYVTDTASDGEEALDLAYVENYDIIILDINLPKKDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + + ++ ++ +T + + ++KPF L++L + LL K+
Sbjct: 62 VLRDIRQFNREVNIIMLTARSDIDDRVRGLDYGANDYMTKPFDLKELDARMRSLLRRKS 120
>gi|77463153|ref|YP_352657.1| phosphate regulon transcriptional regulator, PhoR [Rhodobacter
sphaeroides 2.4.1]
gi|126462025|ref|YP_001043139.1| two component transcriptional regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|221639010|ref|YP_002525272.1| winged helix family two component transcriptional regulator
[Rhodobacter sphaeroides KD131]
gi|332558027|ref|ZP_08412349.1| Two component transcriptional regulator, winged helix family
protein [Rhodobacter sphaeroides WS8N]
gi|77387571|gb|ABA78756.1| Phosphate regulon transcriptional regulator, PhoR [Rhodobacter
sphaeroides 2.4.1]
gi|126103689|gb|ABN76367.1| two component transcriptional regulator, winged helix family
[Rhodobacter sphaeroides ATCC 17029]
gi|221159791|gb|ACM00771.1| Two component transcriptional regulator, winged helix family
[Rhodobacter sphaeroides KD131]
gi|332275739|gb|EGJ21054.1| Two component transcriptional regulator, winged helix family
protein [Rhodobacter sphaeroides WS8N]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L G+ VV NG A V E +++ D ++P + GIE+
Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGNGDEALMLVEEAGPDVIVLDWMLPSVSGIEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ ++ + + KP+ + +L+ V L
Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRR 126
>gi|325291259|ref|YP_004267440.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324966660|gb|ADY57439.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 228
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + RFL L GY V ++G S Y+K L++ D+++PE+
Sbjct: 1 MKTRILVIEDEVKIARFLELELTYEGYAVEVAHDGRSGYEKAAAGNVDLIILDLMLPELS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + D+ ++ +T V+ ++K F + +L+ + +L
Sbjct: 61 GIEVCRRVRKE-SDVPIIMLTAKDDVSDKVMGLDSGADDYMTKSFAIEELLARIRVILKR 119
Query: 121 KN 122
K+
Sbjct: 120 KS 121
>gi|258517267|ref|YP_003193489.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257780972|gb|ACV64866.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 226
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ ++D ++R + L G+ V +G A D +SL+ D+++P +DG
Sbjct: 3 NIKILIVDNDRNVRDVIKLLLVNEGFTVDESGDGNEALDIFSIHNYSLISLDVMLPGLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E ++ ++ +T ++KPF +++V + +L
Sbjct: 63 WTVCKKIRER-SNIPIIILTARDEEYAKLLGFELGVDDYITKPFSPKEVVARIKAVLKRA 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|222110191|ref|YP_002552455.1| winged helix family two component transcriptional regulator
[Acidovorax ebreus TPSY]
gi|221729635|gb|ACM32455.1| two component transcriptional regulator, winged helix family
[Acidovorax ebreus TPSY]
Length = 242
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
+IL+ ED+ D+ L+ L AGY +G +A + +P L L D+++P +DG+
Sbjct: 6 RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R+A + ++ IT + KPF R++V V +L +
Sbjct: 66 EVLRQARRHTDN-PIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVLRRR 123
>gi|323463385|gb|ADX75538.1| two-component response regulator SaeR [Staphylococcus
pseudintermedius ED99]
Length = 228
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ D+R GY V + +NG A D + +++ DI+MPEM+
Sbjct: 1 MT-HILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN-VDVMVIDIMMPEMN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R D+ +++T + + KPF R+LV V L+
Sbjct: 59 GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118
Query: 121 KN 122
N
Sbjct: 119 VN 120
>gi|322807669|emb|CBZ05244.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +DD + FL L K YEV NG A DK+R E F+L+L DI+MP++D
Sbjct: 1 MSYKMLIVDDDKTIVEFLQIFLIKEEYEVRISYNGEEALDKIRSEQFNLILMDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R L ++ ++F+T + ++KPF L +L V+ +L
Sbjct: 61 GFEAIKRIRRLT-NIPIIFLTAKDSQQDKIKGFISGCDDYITKPFDLVELSLRVSAILKR 119
>gi|196039393|ref|ZP_03106698.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196045673|ref|ZP_03112903.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|218906439|ref|YP_002454273.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|196023504|gb|EDX62181.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196029553|gb|EDX68155.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218535506|gb|ACK87904.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 223
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|28871510|ref|NP_794129.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|66047297|ref|YP_237138.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|213970324|ref|ZP_03398454.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|257486388|ref|ZP_05640429.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289625007|ref|ZP_06457961.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289647066|ref|ZP_06478409.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. aesculi str. 2250]
gi|289677749|ref|ZP_06498639.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae FF5]
gi|298488561|ref|ZP_07006591.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|301385476|ref|ZP_07233894.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. tomato Max13]
gi|302062994|ref|ZP_07254535.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. tomato K40]
gi|302135278|ref|ZP_07261268.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|302189741|ref|ZP_07266414.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae 642]
gi|28854761|gb|AAO57824.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|63258004|gb|AAY39100.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|213924996|gb|EEB58561.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|298156902|gb|EFH97992.1| DNA-binding response regulator ColR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322421|gb|EFW78514.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. glycinea str. B076]
gi|320330111|gb|EFW86098.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. glycinea str. race 4]
gi|330868739|gb|EGH03448.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aesculi str. 0893_23]
gi|330877907|gb|EGH12056.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. morsprunorum str. M302280PT]
gi|330888541|gb|EGH21202.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. mori str. 301020]
gi|330895192|gb|EGH27530.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. japonica str. M301072PT]
gi|330943745|gb|EGH46029.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330950189|gb|EGH50449.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae Cit 7]
gi|330966157|gb|EGH66417.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. actinidiae str. M302091]
gi|330973353|gb|EGH73419.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aceris str. M302273PT]
gi|330989414|gb|EGH87517.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. lachrymans str. M301315]
gi|331009877|gb|EGH89933.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. tabaci ATCC 11528]
gi|331017964|gb|EGH98020.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. lachrymans str. M302278PT]
Length = 227
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ + LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|107023112|ref|YP_621439.1| two component transcriptional regulator [Burkholderia cenocepacia
AU 1054]
gi|116686646|ref|YP_839893.1| two component transcriptional regulator [Burkholderia cenocepacia
HI2424]
gi|170735251|ref|YP_001774365.1| two component transcriptional regulator [Burkholderia cenocepacia
MC0-3]
gi|105893301|gb|ABF76466.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia AU 1054]
gi|116652361|gb|ABK13000.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia HI2424]
gi|169821289|gb|ACA95870.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia MC0-3]
Length = 239
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|313901323|ref|ZP_07834810.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312953931|gb|EFR35612.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 233
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD ++R + L + GY+V NG A + + + L + DI+MP MDG E
Sbjct: 5 RILVVDDDKEIREIIRVLLTQEGYDVSEARNGREALEYMNDH-IDLYILDIMMPYMDGYE 63
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + + + ++F+T L+KPF +L+ V +L
Sbjct: 64 LCEQIRK-HSNAPILFLTAKGTQKDKAQGFFKGADDYLAKPFSYSELLVRVKAML 117
>gi|302385604|ref|YP_003821426.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302196232|gb|ADL03803.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 233
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ L L Y V A + + + DI++P+M
Sbjct: 1 MQEKILVVDDEQEISDLLELYLQNENYSVFKFYTAKEALACIETTEIDIAILDIMLPDMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ ++ ++ +T ++KPF ++V V L
Sbjct: 61 GFTLCQKIR-VNHAYPIIMLTAKDQEIDKITGLTLGADDYITKPFRPLEVVARVKAQLRR 119
>gi|300119508|ref|ZP_07057060.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|298723098|gb|EFI63988.1| DNA-binding response regulator [Bacillus cereus SJ1]
Length = 233
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|229056343|ref|ZP_04195761.1| Two-component response regulator [Bacillus cereus AH603]
gi|228721011|gb|EEL72553.1| Two-component response regulator [Bacillus cereus AH603]
Length = 228
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 5 NMRLLVVEDNASLIESIVQILRDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ L KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRR 122
>gi|229092184|ref|ZP_04223365.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|229122743|ref|ZP_04251952.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228660607|gb|EEL16238.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228691175|gb|EEL44939.1| Two-component response regulator [Bacillus cereus Rock3-42]
Length = 226
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|218248106|ref|YP_002373477.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257060567|ref|YP_003138455.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|218168584|gb|ACK67321.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256590733|gb|ACV01620.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 225
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L L GYEV +NG Y+ + LL+ D ++P GIE
Sbjct: 2 KILLVDDEPELTEPLTHVLSHEGYEVDVTDNGNIGYELAVNNSYDLLILDWMLPNKPGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQALRSQGNTTPVLFLTAKDTLNDRVLGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|218246258|ref|YP_002371629.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257059308|ref|YP_003137196.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|218166736|gb|ACK65473.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256589474|gb|ACV00361.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 225
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ +++ L Y V +G A++ + + L+L DI++P++DGI
Sbjct: 2 KILLVEDDENIALPVVEDLSDRHYIVEVAQDGEMAFELLDVYEYDLILLDIMLPKIDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR ++ +T V+ L KPF L++L + L+
Sbjct: 62 LCRRLRSQGCQTPILMLTARDTVSDRVAGLDAGADDYLVKPFALQELSARIRALMRR 118
>gi|206978308|ref|ZP_03239184.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217957829|ref|YP_002336373.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|225862313|ref|YP_002747691.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|229137101|ref|ZP_04265723.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|206743476|gb|EDZ54907.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217068004|gb|ACJ82254.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|225789374|gb|ACO29591.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228646361|gb|EEL02573.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 233
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|118477956|ref|YP_895107.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118417181|gb|ABK85600.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 248
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 18 MNKNILIIDDDKEIVELLAVYLRNEGYNIYKAYDGDDALQMISTYEVDLMILDIMMPKRN 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E + + ++ ++ A + KPF+ +LV V LL
Sbjct: 78 GLEVCQEVRENN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELVARVKALLRR 136
Query: 121 KN 122
+
Sbjct: 137 SS 138
>gi|6448492|emb|CAB61229.1| vanr protein [Bacillus circulans]
Length = 231
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ D+ + L Y V A D + + L + DI++P
Sbjct: 1 MSNKILVVDDEHDIADLVELYLKNENYTVFKYYTAKEALDCIDKTELDLAILDIMLPGAS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T + ++KPF +L+ V L
Sbjct: 61 GLSICQKIRDKY-TYPIIMLTAKDSEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|327543489|gb|EGF29908.1| two-component system response regulator [Rhodopirellula baltica
WH47]
Length = 239
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+AEDD R L + LG GY+V + +G SA + + F L+ D++MP
Sbjct: 1 MT-RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKNFDLVCLDVMMPMKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R D V+FIT +SKPF +++ V +L
Sbjct: 60 GFDVCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRR 119
>gi|324329208|gb|ADY24468.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 223
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|318040692|ref|ZP_07972648.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 246
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +I + +DD + RR L L GY+V ++G ++ + L++ D+++P DG
Sbjct: 9 SARIWVVDDDPEQRRLLGTYLTDQGYDVRCLSSGEQLMARLDGQRPDLVVLDVMLPGDDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L RR + DL V+ +T L KPF R+L + +L +
Sbjct: 69 LTLLRRLRDGGDDLPVVMLTARGDGVDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128
>gi|297538213|ref|YP_003673982.1| winged helix family two component transcriptional regulator
[Methylotenera sp. 301]
gi|297257560|gb|ADI29405.1| two component transcriptional regulator, winged helix family
[Methylotenera sp. 301]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +DD + L + L G++V N+G + V F L + D++MP+++
Sbjct: 1 MMHKILLIDDDIALTEMLEQYLVTEGFDVTVANDGQTGAQYVLAGQFDLTVLDVMMPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE R + + V+ +T + ++KP R+L+ + LL
Sbjct: 61 GIETLRIIRQA-SHIPVIMLTAKGDESERVMGLESGADDYVAKPCTPRELLARIRALLRR 119
>gi|153808930|ref|ZP_01961598.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
gi|149128263|gb|EDM19482.1| hypothetical protein BACCAC_03231 [Bacteroides caccae ATCC 43185]
Length = 1384
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++++ + K L Y V + NG + E L+++D++MPEMDG+E
Sbjct: 1129 ILVIEDNEELLHLMTKLLRHE-YNVFTAENGKEGIAVLENEDIDLIVSDVMMPEMDGMEF 1187
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T ++ +SKPF+L L + LL K
Sbjct: 1188 CKYVKGKLEISHIPVILLTAKNKEEDRAEAYEVGADAFISKPFNLAVLHARIRNLLKYK 1246
>gi|322615749|gb|EFY12669.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620597|gb|EFY17457.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322621776|gb|EFY18626.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322627501|gb|EFY24292.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322630808|gb|EFY27572.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637974|gb|EFY34675.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642244|gb|EFY38852.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644965|gb|EFY41497.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651129|gb|EFY47514.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322656615|gb|EFY52903.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658727|gb|EFY54984.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322661831|gb|EFY58047.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666423|gb|EFY62601.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672421|gb|EFY68533.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676271|gb|EFY72342.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322679640|gb|EFY75685.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684350|gb|EFY80354.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323191832|gb|EFZ77081.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323198900|gb|EFZ83998.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323200966|gb|EFZ86035.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209363|gb|EFZ94296.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323212950|gb|EFZ97752.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216693|gb|EGA01418.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323219810|gb|EGA04289.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226126|gb|EGA10343.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228779|gb|EGA12908.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236610|gb|EGA20686.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239890|gb|EGA23937.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242063|gb|EGA26092.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247497|gb|EGA31452.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250598|gb|EGA34480.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259328|gb|EGA42970.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323263795|gb|EGA47316.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265611|gb|EGA49107.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270056|gb|EGA53504.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 229
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L + G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQQEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|317123920|ref|YP_004098032.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315588008|gb|ADU47305.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 249
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ + + + L +AGY V G A R +++ D+ +P +DG+
Sbjct: 13 RRVLVVDDERALAQMVSTYLARAGYSVSEAYTGPDALSMARALDPDVIVLDLGLPGLDGV 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ D V+ +T + ++KPF R+LV V +L
Sbjct: 73 EVCRQIR-TFSDCYVLMLTARGDEMDRIIGLSVGADDYITKPFSARELVARVQAVLRR 129
>gi|298243644|ref|ZP_06967451.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297556698|gb|EFH90562.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 232
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++A+DD DM L L GYEV+ +G A + RE L++ DI MP++DG E
Sbjct: 2 KIMVADDDRDMVDMLSYWLKGHGYEVIRAFDGEQAIKRWRESLPDLVILDIQMPKLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T L KPF R L+ + ++
Sbjct: 62 VCRQMRNETNSM-VLILTAHDREDDEVRGLELGADDYLRKPFSPRQLLARIKAVMRR 117
>gi|260172793|ref|ZP_05759205.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides sp. D2]
gi|315921079|ref|ZP_07917319.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313694954|gb|EFS31789.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1330
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+DD R FLI L Y+V NG A + + + ++++D++MPEMDG+EL
Sbjct: 1084 LIVEDNDDFRNFLINCLKGT-YQVFDAPNGKEALEILAHQSIQIVISDVMMPEMDGMELC 1142
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ + V+ +T A ++KPF+L L+ + ++L
Sbjct: 1143 RKIKTDIRYSHIPVILLTARTADEHELSGLKEGADDYITKPFNLEILLLRIQKILK 1198
>gi|254526324|ref|ZP_05138376.1| two-component response regulator [Prochlorococcus marinus str. MIT
9202]
gi|221537748|gb|EEE40201.1| two-component response regulator [Prochlorococcus marinus str. MIT
9202]
Length = 260
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|169628810|ref|YP_001702459.1| putative two-component system response regulator [Mycobacterium
abscessus ATCC 19977]
gi|169240777|emb|CAM61805.1| Putative two-component system response regulator [Mycobacterium
abscessus]
Length = 227
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ + + L GY V + +NG A RE P L++ D+++P +DG+
Sbjct: 5 RRILVVDDEPTICASISARLRAEGYAVDTEDNGLDAVRHCRENPPDLMVLDVMLPGLDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R+ P + V+ +T L KPF +R LV V LL +
Sbjct: 65 EVCRQVQAHAP-IPVLMLTARGTETDMLVGLGVGADDYLPKPFSMRVLVARVAALLRRTH 123
>gi|94268091|ref|ZP_01291082.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451731|gb|EAT02499.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 298
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L +DD D+ + L L GY + + A A +++E P L++ D+++P+ DG+E
Sbjct: 74 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLE 133
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L P L V+ +T V+ + KPF +L+ + L
Sbjct: 134 FCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 189
>gi|78778516|ref|YP_396628.1| two component transcriptional regulator [Prochlorococcus marinus
str. MIT 9312]
gi|78712015|gb|ABB49192.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. MIT 9312]
Length = 260
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + + L +G++V +G + L+L D+++P +D
Sbjct: 1 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|331085462|ref|ZP_08334547.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407700|gb|EGG87198.1| hypothetical protein HMPREF0987_00850 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 145
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ EDD ++R + L GY V NG + E L + DI+MP MD
Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + R E + V+ ++ + ++KPF +L+ VN L
Sbjct: 61 GITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|301056729|ref|YP_003794940.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|300378898|gb|ADK07802.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 223
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|297158401|gb|ADI08113.1| putative two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 226
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229048244|ref|ZP_04193812.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH676]
gi|228722969|gb|EEL74346.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH676]
Length = 230
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|199599197|ref|ZP_03212599.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
gi|258507151|ref|YP_003169902.1| two-component response regulator [Lactobacillus rhamnosus GG]
gi|258538344|ref|YP_003172843.1| two-component response regulator [Lactobacillus rhamnosus Lc 705]
gi|199589878|gb|EDY97982.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus rhamnosus HN001]
gi|257147078|emb|CAR86051.1| Two-component response regulator [Lactobacillus rhamnosus GG]
gi|257150020|emb|CAR88992.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705]
gi|259648521|dbj|BAI40683.1| two-component response regulator [Lactobacillus rhamnosus GG]
Length = 224
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + L + GY V N +AYD ++ E F L+L+DI+MP++DG +
Sbjct: 3 KILVVEDDRNFNDLIATILRQNGYTVQGAENPPAAYDLLQSEQFDLVLSDIMMPQVDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ DP + ++FIT +A + KP + +L+ + LL
Sbjct: 63 FAQELRRTDPSIPILFITARDDIASKEKGFNSGIDDYMVKPINFNELLLRIKALLRR 119
>gi|254422271|ref|ZP_05035989.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196189760|gb|EDX84724.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 227
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L L + GY V ++G + + LL+ D ++ +M G+E
Sbjct: 2 RILLVDDEVELTDPLSHLLRRQGYSVDVASDGETGAQMAISGQYDLLILDRMLSKMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + D L KPF LR+L+ V LL
Sbjct: 62 ICQKVRSQALSTPVLFLTAKDTLDDRVDGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|187736215|ref|YP_001878327.1| two component transcriptional regulator, winged helix family
[Akkermansia muciniphila ATCC BAA-835]
gi|187426267|gb|ACD05546.1| two component transcriptional regulator, winged helix family
[Akkermansia muciniphila ATCC BAA-835]
Length = 234
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+AEDDD +R L L +GYEV++ G +A VRE F L L D+ MP DG +
Sbjct: 7 TILIAEDDDSIRHALTDVLTASGYEVLALEEGLAAIHAVRERNFDLALLDVAMPGADGFQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +E P V+ +T + KPF +R+L+ + +L
Sbjct: 67 VLQVMSEERPGTPVIMLTARGEEEDRVQGLKLGADDYIVKPFSIRELLARIEAVLRR 123
>gi|222056452|ref|YP_002538814.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
gi|221565741|gb|ACM21713.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. FRC-32]
Length = 457
Score = 147 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I++ +D+ MR FL+ L + GY V C + A A ++ F L+++D+ MP ++
Sbjct: 1 MAATIMVVDDEQSMREFLVILLEREGYAVQQCESAACALSLLQSSGFDLVISDVNMPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R P+ V+ IT + ++ ++KPF + ++ V L
Sbjct: 61 GMELLERIKSTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEK 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|323438700|gb|EGA96442.1| two-component response regulator [Staphylococcus aureus O11]
Length = 219
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ ++ RFL L Y V + +G DK + L++ D+++P ++
Sbjct: 1 MTQ-ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALIHYYDLIILDLMLPSIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|320161443|ref|YP_004174667.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319995296|dbj|BAJ64067.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL ED+ ++ R L KAG++V+ + G + R+ L+L D+ +P MD
Sbjct: 1 MS-TVLLIEDETELARVAQSYLEKAGFQVILASRGDTGLSLFRQHKPDLVLLDLNLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR D+ ++ +T + KP+ +R+LV V +L
Sbjct: 60 GLDVAREIRRQ-SDVPLIMVTARVEETDRLIGLELGADDYIVKPYSVRELVARVRAVLRR 118
>gi|315651506|ref|ZP_07904527.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
gi|315486241|gb|EFU76602.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
Length = 232
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K L+ +D+ + + + +L + YEV +G A +E+ + ++L D+++PEMD
Sbjct: 1 MMNKALVVDDEKLIVKGIKFSLEQDDYEVDVAYDGKEALKMAKEKEYDIVLLDVMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 61 GMEVCQAIRE-FSEMPIIMLTAKGTDMDKILGLEYGADDYITKPFNILEVKARIKAIIRR 119
>gi|312891249|ref|ZP_07750768.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311296209|gb|EFQ73359.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL EDD ++ L L G ++VV C +G + F LL+ D++MP+ DG
Sbjct: 2 KILLVEDDPNLGMLLQDYLQLKGKFDVVLCKDGEEGLKAFTKSTFDLLILDVMMPKKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + +++P + ++F T A + + ++KPF + +L+ +N LL N
Sbjct: 62 TLGKEIRKMNPKVPIIFATAKAMIEDKTQAFNLGGDDYITKPFRIEELLLRINALLKRVN 121
>gi|269836782|ref|YP_003319010.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269786045|gb|ACZ38188.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + R L + L G+ V +G + D + L + D+++P++DG+E+
Sbjct: 3 ILVVEDEQRLARLLQRVLQDEGHTVHLAYDGVTGLDMALRGDYDLAILDLMLPDLDGVEI 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ +T AV L KPF + +LV VN LL
Sbjct: 63 CRHLRAARVRTPILMLTARGAVEDRVTGLNAGADDYLVKPFAMAELVARVNALLRR 118
>gi|32475887|ref|NP_868881.1| two-component system response regulator [Rhodopirellula baltica SH
1]
gi|32446430|emb|CAD76258.1| two-component system response regulator [Rhodopirellula baltica SH
1]
Length = 239
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD R L + LG GY+V + +G SA + + F L+ D++MP G +
Sbjct: 3 RILIAEDDRHTRAALEELLGAEGYDVATVGDGLSASKMIESKKFDLVCLDVMMPMKSGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+FIT +SKPF +++ V +L
Sbjct: 63 VCRLLRAEDHRTPVIFITAKGDEIDKVVGLELGADDYISKPFGSHEVIARVKAVLRR 119
>gi|17231256|ref|NP_487804.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17132898|dbj|BAB75463.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 369
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GYE+ ++G SA KV + P L+L D++MP MDG E
Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ IT F + + + KPF +L+ V LL +K
Sbjct: 71 VTRRIRNNPALSYIPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRLK 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|295135073|ref|YP_003585749.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
gi|294983088|gb|ADF53553.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
Length = 240
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L YEV NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLAMNEYEVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEEIPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124
>gi|255524900|ref|ZP_05391848.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255511378|gb|EET87670.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 231
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ +DD D+ + L Y+V +G A +KV +E F L++ DI++P++
Sbjct: 1 MNKGKILIVDDDKDIVNLITDILEDELYQVDKAYSGQEAINKVEKESFDLIILDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI++ R+ + ++F+T ++KPF +L V L
Sbjct: 61 DGIDVCRKIRDKFLGT-IIFLTAKNRGVDKIVGLEIGADDYITKPFDDGELCARVKAHLR 119
Query: 120 IK 121
+
Sbjct: 120 KQ 121
>gi|296131168|ref|YP_003638418.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
gi|296022983|gb|ADG76219.1| two component transcriptional regulator, winged helix family
[Cellulomonas flavigena DSM 20109]
Length = 258
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + F+ AL G+E + A A + L++ D+++P+ G+E
Sbjct: 23 RVLVVDDEAFLADFVATALRYEGFETQTAGTSAQAVASAQTFDPDLVVLDVMLPDRSGLE 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R L D V+F+T A A ++KPF L +LV V +L
Sbjct: 83 TCRELRRLGLDAPVVFLTARDAQADRIAGLTVGGDDYVTKPFSLDELVLRVRAVLRR 139
>gi|229015904|ref|ZP_04172869.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229022125|ref|ZP_04178677.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228739177|gb|EEL89621.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228745391|gb|EEL95428.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 223
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|229056358|ref|ZP_04195775.1| Two-component response regulator [Bacillus cereus AH603]
gi|228720977|gb|EEL72521.1| Two-component response regulator [Bacillus cereus AH603]
Length = 223
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|150025574|ref|YP_001296400.1| two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
gi|149772115|emb|CAL43591.1| Two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LLAEDD D L + L Y + +G A E F + + DI+MP+MDG
Sbjct: 2 KKVLLAEDDFDFADVLKQYLELYNYHITWAKDGEEALLLFENETFDICVFDIMMPKMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA++ +++P+ +F+T + KPF +LV +N +L
Sbjct: 62 TLAQKIIDMNPETPFVFLTARKLKEDKLKGLQLGADDYIVKPFEADELVLRLNNILKR 119
>gi|239981204|ref|ZP_04703728.1| putative two-component system response regulator [Streptomyces
albus J1074]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|182438316|ref|YP_001826035.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178466832|dbj|BAG21352.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|121608267|ref|YP_996074.1| two component transcriptional regulator [Verminephrobacter eiseniae
EF01-2]
gi|121552907|gb|ABM57056.1| two component transcriptional regulator, winged helix family
[Verminephrobacter eiseniae EF01-2]
Length = 238
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ +G SA ++ ++L D ++P
Sbjct: 8 MRKLPRVLIVEDEPAIAELIAINLRHNGFQPFWAEDGESAQRELDAVLPEVILLDWMLPG 67
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+ LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 68 QSGLSLARKWRADSRTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 127
Query: 117 LLTIK 121
+L +
Sbjct: 128 VLRRR 132
>gi|302544413|ref|ZP_07296755.1| DNA-binding response regulator RegX3 [Streptomyces hygroscopicus
ATCC 53653]
gi|302462031|gb|EFL25124.1| DNA-binding response regulator RegX3 [Streptomyces himastatinicus
ATCC 53653]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229015017|ref|ZP_04172094.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
gi|229021448|ref|ZP_04178059.1| DNA-binding response regulator [Bacillus cereus AH1273]
gi|229024498|ref|ZP_04180945.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228736786|gb|EEL87334.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228739853|gb|EEL90239.1| DNA-binding response regulator [Bacillus cereus AH1273]
gi|228746284|gb|EEL96210.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ L Y+V+ NG A D ++ + L++ DI+MP+MD
Sbjct: 1 MNGTILVVDDESEIVDVLSDIFSDRDYKVLKAYNGEQALDHLKTQ-VDLVILDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + E ++F++ + ++KPF +++L+ V L
Sbjct: 60 GFEFCKVVREQIK-CPILFLSAKHSEIDKVKGFTLGGDDYITKPFQVKELIARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|157412484|ref|YP_001483350.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
gi|157387059|gb|ABV49764.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
Length = 263
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + + L +G++V +G + L+L D+++P +D
Sbjct: 4 MKISILLIEDDRDMRDLVARHLEHSGFDVQKAEDGIKGQALALQYSPDLILLDLMLPSVD 63
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E ++ ++ IT + ++KPF L +L + LL
Sbjct: 64 GLTLCQRLRRDERTSNIPILMITALGGLKDKVTGFNSGADDYITKPFDLEELHVRIKALL 123
Query: 119 TIKN 122
N
Sbjct: 124 RRTN 127
>gi|33239602|ref|NP_874544.1| two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
gi|33237127|gb|AAP99196.1| Two-component response regulator [Prochlorococcus marinus subsp.
marinus str. CCMP1375]
Length = 255
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P +D
Sbjct: 1 MKPCILLIEDDKDMRELVGGHLEHTGFDVQVAEDGIKGQALALQYKPDLILLDLMLPNVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT A L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSSIPILMITALGATKDKVTGFNSGADDYLTKPFDLEELHVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|310641862|ref|YP_003946620.1| response regulators consisting of a chey-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
gi|309246812|gb|ADO56379.1| Response regulators consisting of a CheY-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
Length = 233
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ILL +D+ ++ + + L GY ++ +G A ++V E +++ D++MP MDG
Sbjct: 3 NGTILLVDDEPEIIKLMQIYLENEGYRLLMARDGLEALEQVNREQIDVMVLDVMMPNMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + E + ++ ++ + ++KPF +LV + L
Sbjct: 63 IEACMKIRETE-HFPIIMLSAKGQDMDKITGLSVGADDYVTKPFSPLELVARIKSQLRR 120
>gi|226356929|ref|YP_002786669.1| response regulator OmpR [Deinococcus deserti VCD115]
gi|226318919|gb|ACO46915.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
Length = 222
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D
Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAADGITGLTSAREHAPDLVVLDLGLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ARR + + ++ +T AV + ++KPFH +LV V L
Sbjct: 61 GAEVARRLRK-TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|170759641|ref|YP_001785959.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169406630|gb|ACA55041.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA + + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRARQKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119
>gi|167745896|ref|ZP_02418023.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
gi|167654411|gb|EDR98540.1| hypothetical protein ANACAC_00590 [Anaerostipes caccae DSM 14662]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++D+R L K L K Y C NG A D + + ++ DI++P +DG+E
Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E D V+F+T + L KPF +L+ V ++ K
Sbjct: 62 LLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119
>gi|56420692|ref|YP_148010.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|56380534|dbj|BAD76442.1| two-component response regulator [Geobacillus kaustophilus HTA426]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL ED+ + RFL L G++V C +G + E + L+L D+++P ++
Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPRLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ IT +V + KPF + +L+ + L
Sbjct: 61 GMEVCRRIRAAKS-TPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119
>gi|39936632|ref|NP_948908.1| two-component transcriptional regulator [Rhodopseudomonas palustris
CGA009]
gi|192292455|ref|YP_001993060.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
gi|39650488|emb|CAE29011.1| two-component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris CGA009]
gi|192286204|gb|ACF02585.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
Length = 240
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + R + K L V + +G + + L++ D+++P DG+ L
Sbjct: 8 ILVVEDDRETRALIAKYLRANNCNVATAADGREMERWIADHRVDLVVLDVMLPGEDGLSL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + L ++ +T L KPF+ R+L+ + +L +
Sbjct: 68 CRKIRA-NSALPIIMLTARGDDVDRILGLEMGADDYLPKPFNPRELLARIRSVLRRQ 123
>gi|84393815|ref|ZP_00992561.1| Sensory box sensor histidine kinase/response regulator [Vibrio
splendidus 12B01]
gi|84375555|gb|EAP92456.1| Sensory box sensor histidine kinase/response regulator [Vibrio
splendidus 12B01]
Length = 1129
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + +G + + +E LLL DI+MP M G ++
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786
Query: 67 RATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L ++ +T LSKPF+ ++L + L+
Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLS 841
>gi|124265328|ref|YP_001019332.1| two component transcriptional regulator [Methylibium petroleiphilum
PM1]
gi|124258103|gb|ABM93097.1| two component transcriptional regulator, winged helix family
[Methylibium petroleiphilum PM1]
Length = 251
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMDGI 62
IL+ ED+ + L AL G+E + C G +A + + +L++ D+ +P+++G
Sbjct: 6 ILIVEDEPGIADTLSYALRTEGFEPLWCATGEAALQHLPPQAPAPALVILDVGLPDLNGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL +R E DL V+F+T + ++KPF R+LV V +L
Sbjct: 66 ELFKRIRERAADLPVVFLTARSDEIDRVVGLELGADDYVAKPFSPRELVARVRTVLRR 123
>gi|325914534|ref|ZP_08176878.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325539304|gb|EGD10956.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
Length = 227
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G E PF + + D+ +P+M G+E
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGLEVPFDVGIIDLGLPKMSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LIKALRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118
>gi|319893564|ref|YP_004150439.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
gi|317163260|gb|ADV06803.1| Response regulator SaeR [Staphylococcus pseudintermedius HKU10-03]
Length = 228
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ D+R GY V + +NG A D + +++ DI+MPEM+
Sbjct: 1 MT-HILIVDDEQDIREICKTYFEYEGYHVSTASNGKEALDLLNTN-VDVMVIDIMMPEMN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R D+ +++T + + KPF R+LV V L+
Sbjct: 59 GYEVVREMKNQGLDIPYVYLTAKTSEQDTIFGLMLGADDYVKKPFSPRELVIRVKNLMNR 118
Query: 121 KN 122
N
Sbjct: 119 VN 120
>gi|229017208|ref|ZP_04174118.1| Two-component response regulator vanR [Bacillus cereus AH1273]
gi|229023385|ref|ZP_04179889.1| Two-component response regulator vanR [Bacillus cereus AH1272]
gi|228737946|gb|EEL88438.1| Two-component response regulator vanR [Bacillus cereus AH1272]
gi|228744088|gb|EEL94180.1| Two-component response regulator vanR [Bacillus cereus AH1273]
Length = 247
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G+ V S +NG A + + L + D++MP+MDGIEL
Sbjct: 21 ILIVDDDRDIIRFINVNLEQEGFTVFSADNGEEALEVLNNNDVQLAILDVMMPQMDGIEL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 81 CRRIREKYS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135
>gi|229163815|ref|ZP_04291758.1| Two-component response regulator [Bacillus cereus R309803]
gi|228619635|gb|EEK76518.1| Two-component response regulator [Bacillus cereus R309803]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|284029757|ref|YP_003379688.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283809050|gb|ADB30889.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 232
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +R L + GY+V + +G A + + ++ D+++P +DGI
Sbjct: 9 RILMVEDDAVIREATQLTLERHGYDVTTAEDGLEAIETFEKVHPDAVMLDVMLPGLDGIS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ ++ ++KPF + LV + ++
Sbjct: 69 VCRRIRE-TSLVPIVMVSARGDALDVVLGLEAGADDYVTKPFDTQVLVARLRAVMRR 124
>gi|164520378|gb|ABY60244.1| PhoP [Listeria monocytogenes]
gi|164520410|gb|ABY60260.1| PhoP [Listeria monocytogenes]
gi|164520432|gb|ABY60271.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|89893944|ref|YP_517431.1| hypothetical protein DSY1198 [Desulfitobacterium hafniense Y51]
gi|219668318|ref|YP_002458753.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89333392|dbj|BAE82987.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538578|gb|ACL20317.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 231
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+D+ + L + K GY+ +G +A + ++ L+L D++MP++DG E
Sbjct: 3 TLLIADDNKQITSILEEYAKKEGYQPHIAWDGCAALELFQQLQPDLVLLDVMMPKVDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + KPF +++ + +L
Sbjct: 63 VCREIRK-TSNVPIIMITARGEDFERIMGLDIGADDYIVKPFSPGEVMARIRAILRR 118
>gi|310641011|ref|YP_003945769.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309245961|gb|ADO55528.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 228
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+A+D+ +R L AL + G+ V + +G A +KVR +L+ D++MP++
Sbjct: 1 MDKRILIADDEASIRNALAYALKREGFLVETAVDGEDALEKVRLFHPDVLILDVMMPKLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR E + ++ +T + +SKPF LR+L+ + L+
Sbjct: 61 GYEVCRRL-ESRKGVGILLLTAKNDIVDKVLGLELGADDFMSKPFDLRELLARIKALVRR 119
>gi|301310264|ref|ZP_07216203.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
gi|300831838|gb|EFK62469.1| DNA-binding response regulator CzrR [Bacteroides sp. 20_3]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+EV +GA+ ++ ++ F LL+ DI+MP+M+G++
Sbjct: 3 KILLVEDEVNIASFIERGLREFGHEVYVAYDGAAGWELTQKNDFQLLILDIIMPKMNGLQ 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCKQYRQRFGYHAPVIMLTALGTTEDIVSGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|298244929|ref|ZP_06968735.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297552410|gb|EFH86275.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 245
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDG 61
++IL+ +D++ ++R L K L GY+V +G A + V+ L+L D+ MP +DG
Sbjct: 6 KRILVVDDEEPIQRVLRKNLLAGGYDVFVAGDGREALEMVKLHQPDLILLDLCMPGELDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ ++ ++ + + L+KPF +L+ V L
Sbjct: 66 LDVCVEVRHRGQKPPIIVLSAMSEERQKVRALDLGADDYLTKPFGSEELMARVRACLRR 124
>gi|283851575|ref|ZP_06368855.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
gi|283573109|gb|EFC21089.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
sp. FW1012B]
Length = 651
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +D++D+RRFL L GY V + NG A E S++LTDI MP MD
Sbjct: 1 MSETLLLVDDEEDIRRFLGLFLADLGYVVHAAANGEEALAMFDEVNPSIVLTDIKMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+EL +R PD +V+ I+G + L + + A ++KP + L + R+
Sbjct: 61 GLELLKRIKARSPDTEVVMISGHGDMDLAINCLQYEAADFVTKPINHDILDAALKRIDEK 120
Query: 118 --LTIK 121
L +
Sbjct: 121 LSLRRE 126
>gi|166368005|ref|YP_001660278.1| OmpR family two-component response regulator [Microcystis
aeruginosa NIES-843]
gi|166090378|dbj|BAG05086.1| two-component response regulator OmpR subfamily [Microcystis
aeruginosa NIES-843]
Length = 250
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 65/127 (51%), Gaps = 7/127 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDI 54
N +IL+ ED++ +R +I AL + GYE + ++G A + ++ + F L++ D+
Sbjct: 18 NHRILIVEDEEVIRDMIILALEEEGYEALGVSDGRVALELLQSQESNHGESRFDLVVLDL 77
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G+++ R + ++ ++ A+ L+KPF +R+LV
Sbjct: 78 MLPQINGLDICRLLRYHGNIIPILILSAKASETDRVLGLEVGADDYLTKPFSMRELVARC 137
Query: 115 NRLLTIK 121
L+ +
Sbjct: 138 RALIRRQ 144
>gi|153870034|ref|ZP_01999517.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
PS]
gi|152073497|gb|EDN70480.1| sigma-54 dependent DNA-binding response regulator [Beggiatoa sp.
PS]
Length = 448
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ D+R + + L G+ V +G +A + E+ L+L DI MP++D
Sbjct: 1 MSAHILVVDDEPDIRSLMKEILEDEGFTVSVAQDGKTARELRSEKHPDLILLDIWMPDID 60
Query: 61 GIELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + E L +V+ I+G V ++ + KP + L+ + R L
Sbjct: 61 GISLLKEWRESGMTLDSQVIMISGHGTVETAVEATRLGAYDFIEKPVSIAKLLLTIKRAL 120
Query: 119 TI 120
+
Sbjct: 121 EM 122
>gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106]
gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106]
Length = 215
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD R + L +GY V+S NG A + V + L++TDI MPEMD
Sbjct: 1 MPLTILVVDDDFGTRLSISDYLEISGYTVISAENGQEALELVDKHKPHLIVTDITMPEMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +L +R L V+F+T A+ L KPF L +L + LL
Sbjct: 61 GYDLVKRIRSRPAFRLLPVIFLTAHTAIQSRIRGYQLGCDNYLPKPFELDELGVVIRALL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|75907784|ref|YP_322080.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75701509|gb|ABA21185.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 369
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GYE+ ++G SA KV + P L+L D++MP MDG E
Sbjct: 11 RILAVDDTKDNLILVQTILESEGYEIDLASDGISALQKVEQSPPDLILLDVMMPGMDGYE 70
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ IT F + + + KPF +L+ V LL +K
Sbjct: 71 VTRRIRNNPALSYVPILLITAF-HESSVVEGLDVGADDFIRKPFDTDELLARVRSLLRLK 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|21221504|ref|NP_627283.1| two-component system reponse regulator [Streptomyces coelicolor
A3(2)]
gi|256787308|ref|ZP_05525739.1| two-component system reponse regulator [Streptomyces lividans TK24]
gi|289771203|ref|ZP_06530581.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|7672246|emb|CAB89435.1| putative two-component system reponse regulator [Streptomyces
coelicolor A3(2)]
gi|289701402|gb|EFD68831.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTAVDAGLQGGIDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRSEGHAVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|294636746|ref|ZP_06715086.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685]
gi|291090047|gb|EFE22608.1| DNA-binding reponse regulator HsfA [Edwardsiella tarda ATCC 23685]
Length = 263
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 63/118 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L AL G+E ++ ++GA A + + P ++L DI MP M+GI+
Sbjct: 6 RILIVDDEDNVRRMLTTALTLQGHETLTASHGAEALQRFTDTPPDVVLMDIRMPTMNGID 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P V+ +T +A V ++ + KPF L +L + R L ++
Sbjct: 66 ALKIMRTRRPRTPVILMTAYAEVETAIEALRSGAFDYVIKPFDLDELNLLIQRALQLQ 123
>gi|229161188|ref|ZP_04289175.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
R309803]
gi|228622284|gb|EEK79123.1| Uncharacterized sensory transduction protein ykoG [Bacillus cereus
R309803]
Length = 227
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ + R + L GYE G A +K + L+L D+++P +
Sbjct: 1 MGERILIVEDEEKIARVVQLELEFEGYESEIAKTGTEAMEKFLNSSWDLILLDVMLPNIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ +T +V + ++KPF + +L+ + L I
Sbjct: 61 GLEVLRRVRLKNAVIPIILLTARDSVVDKVSGLDQGASDYITKPFQIEELLARIRACLRI 120
Query: 121 KN 122
+
Sbjct: 121 SH 122
>gi|212704970|ref|ZP_03313098.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
gi|212671634|gb|EEB32117.1| hypothetical protein DESPIG_03037 [Desulfovibrio piger ATCC 29098]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED++D+R+ L L + G+ V+ +G E L++ D+++P MDG
Sbjct: 2 QRILVIEDENDIRQLLRFNLEREGFAVLEAADGLGGLHMATSELPDLVVLDLMLPGMDGC 61
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ RR + V+ +T + KPF +R+LV + +L
Sbjct: 62 DVCRRLKAQPVTAAIPVLMLTARGEEVDRIVGLTLGADDYVVKPFSVRELVLRIRAILRR 121
>gi|187933155|ref|YP_001884657.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum B str. Eklund 17B]
gi|187721308|gb|ACD22529.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum B str. Eklund 17B]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL ED++ +R F+ L + +EV+ G + L + D+++P +D
Sbjct: 1 MS-RILLVEDEESIRGFIKINLKRNDFEVIEAETGEDGLKAAEKFSIDLAVLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + P + ++ +T + KPF+ +L+ + +L
Sbjct: 60 GFKVCDELRKRYPKIGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRR 119
>gi|146342541|ref|YP_001207589.1| OmpR family two component response transcriptional regulator
[Bradyrhizobium sp. ORS278]
gi|146195347|emb|CAL79372.1| putative two component response transcriptional regulator (OmpR
family) [Bradyrhizobium sp. ORS278]
Length = 246
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD + R + K L V + +G + + LL+ D+++P DG+
Sbjct: 7 HILVVEDDRETRTLIAKYLRNNACNVTTATDGREMTRIMGDHRIDLLILDVMLPGEDGLT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + ++ +T L KPF+ R+L+ +N +L +
Sbjct: 67 LCRKLRAE-SQVPIIMLTARGEDVDRILGLEMGADDYLPKPFNPRELLARINAVLRRQ 123
>gi|327441643|dbj|BAK18008.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 228
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ +L+ +DD D+R + L GY V+ +G A + + + ++ DI+MP+M
Sbjct: 1 MNQLTVLVTDDDQDIRDGIEIYLKNEGYRVLKAADGLEAIELLEQNEVHCMILDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + ++ ++ ++ A + + ++KPFH +L+ V L
Sbjct: 61 DGITATFKIRAER-NIPIIMLSAKAEQSDKIHGLSVGADDYITKPFHPLELMARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|291532478|emb|CBL05591.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Megamonas hypermegale
ART12/1]
Length = 194
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + RFL L G+ S +NG AY+++ +E + L+L DI++P+MD
Sbjct: 1 MS-KILIVEDEHRIARFLQMELEHEGFSTASESNGLRAYERIIQEDYDLVLLDIMLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + +L D+ ++ +T + ++KPF +++L+ + L
Sbjct: 60 GLTICQNVRKL-SDIPIIMLTAKDEINDKVTGLDIGADDYITKPFAIQELLARIRATLRK 118
Query: 121 KN 122
N
Sbjct: 119 HN 120
>gi|268610730|ref|ZP_06144457.1| two component transcriptional regulator, winged helix family
protein [Ruminococcus flavefaciens FD-1]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++R+ + + GYEV NG A + + + L++ D++MP +DG
Sbjct: 3 HILVVDDEVNIRKVVREYAEFEGYEVTEAENGMEAVNLCHDNDYDLIIMDVMMPRLDGYS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ ++ + KPF ++L+ V +L
Sbjct: 63 ACKEIHK-SKNIPVIMLSARGEEYDKLFGFEIGVDDYVVKPFSPKELMARVKVVLKR 118
>gi|320009638|gb|ADW04488.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 245
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+EV S +GA A R+ ++ D+++P+MDG+
Sbjct: 21 RVLVVDDEAPLAELLSMALRYEGWEVRSAGDGAGAVRTARDFRPDAVILDVMLPDMDGLA 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T +V ++KPF L ++V + L+
Sbjct: 81 VLGRLRRELSDVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 137
>gi|164520412|gb|ABY60261.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|153939783|ref|YP_001391249.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152935679|gb|ABS41177.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295319285|gb|ADF99662.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY V++ +NG A + + ++L DI+MP +D
Sbjct: 1 MLEKILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQVCQKIRDKVS-CPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|49481473|ref|YP_038587.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|228929584|ref|ZP_04092602.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228935846|ref|ZP_04098658.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228948260|ref|ZP_04110543.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229124101|ref|ZP_04253293.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
95/8201]
gi|49333029|gb|AAT63675.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|228659403|gb|EEL15051.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
95/8201]
gi|228811247|gb|EEM57585.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228823903|gb|EEM69723.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228829971|gb|EEM75590.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|323490769|ref|ZP_08095971.1| two-component response regulator [Planococcus donghaensis MPA1U2]
gi|323395651|gb|EGA88495.1| two-component response regulator [Planococcus donghaensis MPA1U2]
Length = 218
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L +D+ M + L Y NG A + +++E F L+L DI+MP+MDG E+
Sbjct: 1 MLVDDEKRMLDLVALYLRPHHYVCTKAANGYQALELLKKESFDLVLLDIMMPDMDGWEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D+ ++ +T ++KPF +L+ + +L
Sbjct: 61 RDIRK-FSDIPIIMLTAREQQEDVVKGLRLGADDYMTKPFGEEELLARMEAVLRR 114
>gi|206969728|ref|ZP_03230682.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|206735416|gb|EDZ52584.1| DNA-binding response regulator [Bacillus cereus AH1134]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|160892841|ref|ZP_02073630.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
gi|156865400|gb|EDO58831.1| hypothetical protein CLOL250_00371 [Clostridium sp. L2-50]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L GYEV +C +G A + + E + L++ D+ +P MDG+E
Sbjct: 2 RLLIVEDEKQICDMVAKSLYGVGYEVDTCYDGEEALECILTEDYDLIVLDLNLPGMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + KV+ ++ +A + + KPFH+++L + L K
Sbjct: 62 ILRELRRENEETKVIILSARGQIADKVEGLDAGANDYMEKPFHIKELEARIRSLTRRK 119
>gi|134291059|ref|YP_001114828.1| two component transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134134248|gb|ABO58573.1| two component transcriptional regulator, winged helix family
[Burkholderia vietnamiensis G4]
Length = 239
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|125718593|ref|YP_001035726.1| two-component response transcriptional regulator [Streptococcus
sanguinis SK36]
gi|125498510|gb|ABN45176.1| Two-component response transcriptional regulator (CheY-like
receiver and winged-helix DNA-binding domains), putative
[Streptococcus sanguinis SK36]
Length = 234
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|52140967|ref|YP_085862.1| response regulator [Bacillus cereus E33L]
gi|51974436|gb|AAU15986.1| response regulator [Bacillus cereus E33L]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDFSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|31791784|ref|NP_854277.1| putative two component DNA binding transcriptional regulatory
protein TCRA [Mycobacterium bovis AF2122/97]
gi|121636520|ref|YP_976743.1| putative two component DNA binding transcriptional regulatory
protein tcrA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224988992|ref|YP_002643679.1| putative two component DNA binding transcriptional regulatory
protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|31617371|emb|CAD93480.1| PUTATIVE TWO COMPONENT DNA BINDING TRANSCRIPTIONAL REGULATORY
PROTEIN TCRA [Mycobacterium bovis AF2122/97]
gi|121492167|emb|CAL70633.1| Putative two component DNA binding Transcriptional regulatory
protein tcrA [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224772105|dbj|BAH24911.1| putative two component DNA binding transcriptional regulatory
protein [Mycobacterium bovis BCG str. Tokyo 172]
Length = 253
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M L +AL + G+ V + +G A V + ++ D+++P +DG E
Sbjct: 24 RILVIEDEPKMTALLARALTEEGHTVDTVADGRHAVAAVDGGDYDAVVLDVMLPGIDGFE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T AV L+KPF+L +L + L+ +
Sbjct: 84 VCARLRRQRVWTPVLMLTARGAVTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 140
>gi|186685124|ref|YP_001868320.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186467576|gb|ACC83377.1| multi-component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 787
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L+++L + Y V +G ++ + + L+LTD+V+P++DGI
Sbjct: 2 RILLIEDDEVLASVLLQSLTQQHYAVEIAEDGQIGWEYAQATNYDLILTDVVLPKLDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R ++ IT + L KP +LR+L V LL
Sbjct: 62 LCQRLRSNGCSTPILLITAKDETSDRIRGLDAGADDYLIKPLNLRELQARVRALLRR 118
Score = 114 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD + L L G + ++ ++ ++ LL+ D+ MP + GIEL
Sbjct: 502 VLVVDDDPLILAALGPMLEPWGMRITGLDDPLRFWEVLQSTAPDLLILDVEMPHISGIEL 561
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L ++F+T + A + KP +L+ + L
Sbjct: 562 CQAVRTDPQWQELPIVFLTAHREMETVQQVFAAGGDDYVVKPVVGAELLARITHRLER 619
Score = 40.1 bits (94), Expect = 0.093, Method: Composition-based stats.
Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 8/122 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+LL + D + L + G +A + ++ L++ ++ + G
Sbjct: 374 SSKLLLIDPDLQLGSQLQQVAYSMGMRWQQITTLEAAKNFLQTTSPDLVVLNV---DEIG 430
Query: 62 -----IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ L P + V+ + + L KP + ++
Sbjct: 431 QREETLALMVDLATHTPPIPVLALAVNDRLVDRVTLAQSGARGFLLKPVAASQVWETASQ 490
Query: 117 LL 118
+L
Sbjct: 491 IL 492
>gi|323705669|ref|ZP_08117242.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534887|gb|EGB24665.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ + + L +L + GY V +G +K++ + L++ D+++P++DG+ L
Sbjct: 4 ILIIDDEEMLVKGLKLSLIQEGYYVDCAYDGEEGLEKIKNGNYDLVILDLMLPKIDGLTL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T L+KPF+ R+L+ + L
Sbjct: 64 CKEVRS-FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118
>gi|291548048|emb|CBL21156.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K ++V+ +G A D +E+ +LL+ D++MP+MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLTKKNFQVLEAGDGEEAMDIFYKEKDIALLILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + + ++ +T + +SKPF + LV V +L
Sbjct: 65 EVCREIRK-NSKVPIIMLTARGDERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121
>gi|302540933|ref|ZP_07293275.1| DNA-binding response regulator PhoP [Streptomyces hygroscopicus
ATCC 53653]
gi|302458551|gb|EFL21644.1| DNA-binding response regulator PhoP [Streptomyces himastatinicus
ATCC 53653]
Length = 249
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ EDD +R L ALG AGY+V S G +V LL+ D+++P++DG
Sbjct: 10 THRILVVEDDPGIRLLLESALGLAGYQVSSAATGRDGLLEVERFRPDLLVLDVMLPDLDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++F+T V + KPF + +++ + +L
Sbjct: 70 FEITRNLRGVGVRTPILFLTARTEVGDRIAGLGAGGDDYVGKPFSIEEVLLRIRAILRR 128
>gi|239636903|ref|ZP_04677902.1| response regulator ArlR [Staphylococcus warneri L37603]
gi|239597577|gb|EEQ80075.1| response regulator ArlR [Staphylococcus warneri L37603]
gi|330685054|gb|EGG96724.1| response regulator ArlR [Staphylococcus epidermidis VCU121]
Length = 219
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RF+ L Y+V N+GA+ DK + + L++ D+++P ++G+E+
Sbjct: 4 ILIVEDEKNLARFIELELTHENYQVDIENDGATGLDKALNKTYDLIILDLMLPNINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ IT + + KPF + +L+ + +L +
Sbjct: 64 CRQIRQQQ-TTPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ 119
>gi|227834015|ref|YP_002835722.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|262183498|ref|ZP_06042919.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|227455031|gb|ACP33784.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
Length = 234
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L G++V S N+G A RE + D++MP MDG E
Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQGFDVYSANSGNEALRIAREINPDAYIMDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + D V+++T +V ++KPF L +++ + +L N
Sbjct: 68 LLGKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGN 126
>gi|224370414|ref|YP_002604578.1| two-component transcriptional regulatory protein [Desulfobacterium
autotrophicum HRM2]
gi|223693131|gb|ACN16414.1| two-component transcriptional regulatory protein [Desulfobacterium
autotrophicum HRM2]
Length = 368
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ R + L GY V NG +A + + + ++L D++MP MDG
Sbjct: 7 SPTILVVDDEPRNLRLMEALLIPMGYRVQLVENGEAALELLEKISPDVILLDVMMPGMDG 66
Query: 62 IELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+AR+ E + ++ +T V + L+KP +L V L+
Sbjct: 67 YEVARQVKSREKTRSVPIVMVTALREVTDRVKALEAGADDFLTKPVDKTELTARVRSLVK 126
Query: 120 IK 121
+K
Sbjct: 127 VK 128
>gi|239917967|ref|YP_002957525.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|239839174|gb|ACS30971.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +DD+ + + L G+E +G SA E L+L D+++P +DG
Sbjct: 3 KAKILVVDDDEALAEMIGIVLRNDGFEPTFAADGTSALPAFHRERPDLVLLDLMLPGIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R D+ ++ +T + A + KPF +LV V L
Sbjct: 63 IEVCRLIRAE-SDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 119
>gi|119488494|ref|ZP_01621667.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
gi|119455305|gb|EAW36445.1| hybrid sensory kinase [Lyngbya sp. PCC 8106]
Length = 396
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + R L L + Y+V NG A + + L+L DI+MPEM+G ++
Sbjct: 11 ILIVDDTPENLRLLSSMLEEQSYKVRKATNGKQALKAIEAQSPDLILLDILMPEMNGYQI 70
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A+ LD D+ ++F++ + ++KPF +++++ V +T++N
Sbjct: 71 AKHLKSLDSTRDIPIIFLSALNDTMDKVFAFDVGGVDYITKPFQVQEVLVRVRTQITLRN 130
>gi|90424519|ref|YP_532889.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90106533|gb|ABD88570.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 270
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R+ L + + + V+ + A ++ E L++ D+++P+ G++
Sbjct: 37 ILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLDA 96
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ +T LSKPF+ R+LV + +L ++
Sbjct: 97 CRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRRS 154
>gi|325696360|gb|EGD38251.1| DNA-binding response regulator [Streptococcus sanguinis SK160]
Length = 234
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|218437504|ref|YP_002375833.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
gi|218170232|gb|ACK68965.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
Length = 373
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ +D D + L + G V+ +G +A V+E+ L+L D++MP+MDG
Sbjct: 12 DEKILVVDDSPDNLFLIQTILEEQGLNVILAQDGIAALKLVKEKSPKLILLDVMMPKMDG 71
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R+ P + ++ IT + + + KP + +L+ V LL
Sbjct: 72 FEVTRQIRSNPNIPYIPILLITAYDQPS-AVKGLDVGADDFIRKPVDVDELLARVRSLLR 130
Query: 120 IK 121
+K
Sbjct: 131 LK 132
>gi|196036337|ref|ZP_03103735.1| DNA-binding response regulator [Bacillus cereus W]
gi|195991129|gb|EDX55099.1| DNA-binding response regulator [Bacillus cereus W]
Length = 223
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|160884401|ref|ZP_02065404.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
gi|156110140|gb|EDO11885.1| hypothetical protein BACOVA_02385 [Bacteroides ovatus ATCC 8483]
Length = 224
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V C++G + + +++EPF LL+ DI+MP+++G+E
Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGNTGWKILQDEPFDLLILDIIMPKINGLE 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|94268821|ref|ZP_01291291.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93451451|gb|EAT02291.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 461
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 61/115 (53%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +D+ + L + L + GYEV +G A + +++ L++TD+ MP +DG+
Sbjct: 2 QTILVVDDEPNYLVILEELLREEGYEVFCAESGQQALEIIKQSDLDLVITDMRMPGLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
EL + + E +PDL V+ IT F V + L+KPF +L+ V +
Sbjct: 62 ELLKSSKERNPDLPVIMITAFGEVEKAVAAMRTGAFNYLTKPFDNDELLVSVRQA 116
>gi|86750927|ref|YP_487423.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
HaA2]
gi|86573955|gb|ABD08512.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
HaA2]
Length = 1426
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + LG++ YEV + +G +A + + L+++DI+MP +DG+
Sbjct: 648 RILLADDNPDMRDYVTRLLGES-YEVETVGDGVAALEAAWKHRPDLVISDIMMPRLDGLS 706
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D+ V+F++ A + LSKPF R+L+ V L I
Sbjct: 707 LLKALRSDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 765
Score = 102 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61
+L+ ED+ ++ F + L GYE V + A + ++ F L+L+D+VMP MDG
Sbjct: 1305 VLVVEDNAEVGEFSTQLLHDLGYETVLATSAEQALQLLDQDDAARFHLVLSDVVMPGMDG 1364
Query: 62 IELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L R P L V+ +G+A V L KP+ + DL + R L
Sbjct: 1365 VALGREIRRRLPHLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAL 1418
>gi|304406061|ref|ZP_07387719.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304345304|gb|EFM11140.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + L K Y V + ++G + D + L+L DI++PEMDGI
Sbjct: 2 RLLIVEDEIHLAEALTQILKKQNYSVDAVHDGQAGLDNALSGIYDLILLDIMLPEMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T ++ ++KPF +L+ + L K
Sbjct: 62 VLKTMRSKGIATPVILLTAKGEISDKISGLDYGADDYVAKPFSTEELLARIRAALRRK 119
>gi|52140301|ref|YP_086529.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|228930266|ref|ZP_04093274.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|51973770|gb|AAU15320.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|228829407|gb|EEM75036.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 223
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|110346937|ref|YP_665755.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110283048|gb|ABG61108.1| two component transcriptional regulator, winged helix family
[Chelativorans sp. BNC1]
Length = 242
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +D D+R + L K GY V + +G ++ E L++ D+++P DG
Sbjct: 7 NGHILVVDDHQDIRDLVAGLLAKEGYRVSAAADGRQMRRQLIESSVDLVVLDLMLPGEDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R ++ V+ +T L+KPF R+LV + +L
Sbjct: 67 LTLCRDLRAST-NIPVVMLTAKGDEFDRVLGLEMGADDYLTKPFGGRELVARIRAVLRR 124
>gi|311898335|dbj|BAJ30743.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 244
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ ED+ + + LG G++V ++G A D L++ DI++P DG+
Sbjct: 18 RRVLVVEDEPTIAESIAARLGAEGFKVAVAHDGPGAVDGFHTWQPDLVVLDIMLPGFDGL 77
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L VN LL
Sbjct: 78 EVCRRIQAQRP-VPVLMLTARDDETDLLVGLGVGADDYMTKPFSMRELAARVNVLLRR 134
>gi|256618610|ref|ZP_05475456.1| two-component system response regulator [Enterococcus faecalis ATCC
4200]
gi|256598137|gb|EEU17313.1| two-component system response regulator [Enterococcus faecalis ATCC
4200]
gi|315171705|gb|EFU15722.1| response regulator receiver domain protein [Enterococcus faecalis
TX1342]
Length = 227
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L + V NG+ A K L++ D+++P+ DG+
Sbjct: 2 KILIVDDEVKILEVIDAYLVANKFSVYKATNGSMALSKFESINPDLVVLDLMLPDTDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ +T + + KPF ++LV + +L
Sbjct: 62 VCRKIRE-SSNIPIIMLTAKSDEEDILTGLQLGADDYMVKPFSPKELVARIQTVLRR 117
>gi|222098001|ref|YP_002532058.1| response regulator [Bacillus cereus Q1]
gi|228960804|ref|ZP_04122441.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|229147097|ref|ZP_04275456.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST24]
gi|229186790|ref|ZP_04313946.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BGSC 6E1]
gi|229198686|ref|ZP_04325386.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
m1293]
gi|221242059|gb|ACM14769.1| response regulator [Bacillus cereus Q1]
gi|228584795|gb|EEK42913.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
m1293]
gi|228596683|gb|EEK54347.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BGSC 6E1]
gi|228636346|gb|EEK92817.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
BDRD-ST24]
gi|228798889|gb|EEM45866.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|218234694|ref|YP_002369334.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228923280|ref|ZP_04086569.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228954807|ref|ZP_04116827.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229072041|ref|ZP_04205250.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
F65185]
gi|229180856|ref|ZP_04308192.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
172560W]
gi|229192737|ref|ZP_04319696.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
ATCC 10876]
gi|218162651|gb|ACK62643.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228590827|gb|EEK48687.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
ATCC 10876]
gi|228602619|gb|EEK60104.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
172560W]
gi|228710975|gb|EEL62941.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
F65185]
gi|228804796|gb|EEM51395.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228836374|gb|EEM81726.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|110679874|ref|YP_682881.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter denitrificans OCh 114]
gi|109455990|gb|ABG32195.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter denitrificans OCh 114]
Length = 229
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L L G+ V NG A V E L++ D +MP + GIE+
Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 67
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 68 CRRLKTRSETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSIVELMARVRSQLRR 125
>gi|86605629|ref|YP_474392.1| LuxR family DNA-binding response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86554171|gb|ABC99129.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
JA-3-3Ab]
Length = 223
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DD + L + L + GY V + +G +E ++++D+VMPEMDG
Sbjct: 2 KRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDGF 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R+ + + +F++ + + + KPF +LV ++ +
Sbjct: 62 EFCRQLRQQRGGELVPFIFLSSRSELDDRVQGYEWGADDYIIKPFEPLELVAKIEAQIER 121
>gi|15807407|ref|NP_296139.1| DNA-binding response regulator [Deinococcus radiodurans R1]
gi|6460240|gb|AAF11967.1|AE002072_9 DNA-binding response regulator [Deinococcus radiodurans R1]
Length = 373
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN Q+IL+ EDD D+ L L AGY V ++ + K RE+ L+L D+ +P+
Sbjct: 1 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDF 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ +R + + L ++ +T V L KPFH +L+ V L
Sbjct: 61 DGGDVVQRLRK-NSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLR 119
Query: 120 IK 121
+
Sbjct: 120 QR 121
>gi|150390957|ref|YP_001321006.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149950819|gb|ABR49347.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ ++R+ + L K V+ +G A EE + L++ DI++PE DG
Sbjct: 5 RILLVEDEKNLRKLVATYLKKEMVSVIEAADGKEALVLWEEEQYDLIIVDIMLPEYDGWT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R E ++ ++ +T + ++KPF +++LV V LL N
Sbjct: 65 ICKRIREK-SNVPILILTARSEEHDKLFGFDLGVDDYMTKPFSVKELVARVKALLKRSN 122
>gi|229005191|ref|ZP_04162911.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
gi|228756051|gb|EEM05376.1| Sensor histidine kinase [Bacillus mycoides Rock1-4]
Length = 231
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 2 MKRNILIIDDDKEIVELLAVYLRNEGYCIYKAYDGDEALHMLSLHQIDLMILDIMMPKRN 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E + + ++ ++ A + KPF+ +L+ V LL
Sbjct: 62 GLEVCQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|212691087|ref|ZP_03299215.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
gi|212666319|gb|EEB26891.1| hypothetical protein BACDOR_00577 [Bacteroides dorei DSM 17855]
Length = 1308
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+DD RRFL+ L + Y+V +NG A + + ++ ++++D++MP MDG+EL
Sbjct: 1067 VLVVEDNDDFRRFLVGCLKEH-YQVFEASNGKEALEILSQQSVQMVISDVMMPVMDGLEL 1125
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ V+ +T A ++KPF+L L+ + +LL
Sbjct: 1126 CHAVKTDIRFSHIPVILLTARTAEEHVLGGLREGADDYITKPFNLDILLLRIQKLL 1181
>gi|149922748|ref|ZP_01911173.1| two component transcriptional regulator, winged helix family
protein [Plesiocystis pacifica SIR-1]
gi|149816368|gb|EDM75869.1| two component transcriptional regulator, winged helix family
protein [Plesiocystis pacifica SIR-1]
Length = 256
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M IL+ ED+ D+ L L + GY +G + + EP L+L D+++P++
Sbjct: 1 MPTTILIVEDEQDLLDTLEFNLQREGYATRRAASGRAGLEAAALEPAPDLVLLDLMLPDI 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ R+ E + V+ +T ++KPF +R+L+ V +
Sbjct: 61 SGTEVCRQLRAAERTRSVPVVMLTARGEEVDRVVGFEVGADDYVTKPFSVRELMLRVRAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|271499217|ref|YP_003332242.1| winged helix family two component transcriptional regulator
[Dickeya dadantii Ech586]
gi|270342772|gb|ACZ75537.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech586]
Length = 240
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++ NGA A ++ ++ + ++ D+++P
Sbjct: 1 MNSARKILLVEDDHDIATLLRLNLQDEGYQISHEVNGAHALVQLEKQVWDAVILDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR ++ L V+ I+ + L KPF + +LV V L
Sbjct: 61 VDGLEICRRIRQMTHYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELVARVKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|166033144|ref|ZP_02235973.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
27755]
gi|166027501|gb|EDR46258.1| hypothetical protein DORFOR_02866 [Dorea formicigenerans ATCC
27755]
Length = 260
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V+ G A D + L + DI++P++D
Sbjct: 32 MN--ILVVDDEKEIADVIELYLKNDQYNVLKFYTGQEALDCIASTKIDLAILDIMLPDVD 89
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T + KPF+ +LV V +
Sbjct: 90 GFQILKQIREKY-TFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQIRR 148
>gi|42523020|ref|NP_968400.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100]
gi|39575225|emb|CAE79393.1| regulator protein pilR [Bdellovibrio bacteriovorus HD100]
Length = 468
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D++ +R FL L K GYE+ +G A D + ++ F ++++D+ MP +
Sbjct: 1 MKSRILVVDDEESIREFLEIMLKKEGYEITLAEDGQKAKDLLAKKTFDMIISDLQMPHVT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL + E PD M IT F ++ L+KPF + ++ + L
Sbjct: 61 GIELLKHVKESYPDTVFMLITAFGTTETAVEAMKMGAYDYLTKPFKIDEVRLNIQNALRS 120
Query: 121 KN 122
+N
Sbjct: 121 RN 122
>gi|290954998|ref|YP_003486180.1| response regulator [Streptomyces scabiei 87.22]
gi|260644524|emb|CBG67609.1| putative response regulator [Streptomyces scabiei 87.22]
Length = 239
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD + + L +AGY V +G +A + L++ D+++P MDG+E+
Sbjct: 2 LVVDDDPTVAEVVTGYLDRAGYTVDRAGDGPAALARAAAHRPDLVVLDLMLPGMDGLEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR P + V+ +T ++KPF R+LV V +L
Sbjct: 62 RRLRARGP-VPVIMLTARGDEDDRILGLEVGADDYVTKPFSPRELVLRVESVLRR 115
>gi|304317076|ref|YP_003852221.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778578|gb|ADL69137.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 228
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + RFL L GY V +G + +E + L++ D+++P MD
Sbjct: 1 MGENILIIEDEKKIARFLQIELEHEGYNVAIEYSGNEGLRRALDENYDLIILDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + V+ ++ + L+KPF + +L+ + L
Sbjct: 61 GFSVLKEIRKK-SSIPVIILSAKDEIKDKVMGLDIGADDYLTKPFSIEELMARIRNAL-R 118
Query: 121 KN 122
KN
Sbjct: 119 KN 120
>gi|326441388|ref|ZP_08216122.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
Length = 225
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRR 119
>gi|225374967|ref|ZP_03752188.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
16841]
gi|225213219|gb|EEG95573.1| hypothetical protein ROSEINA2194_00590 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKEYS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|218131895|ref|ZP_03460699.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
gi|217986198|gb|EEC52537.1| hypothetical protein BACEGG_03518 [Bacteroides eggerthii DSM 20697]
Length = 1239
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L + + V + ++G A++ + E L+++D+VMP MDG E
Sbjct: 995 HILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T + L+KPF + L + + ++ +
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113
>gi|119492435|ref|ZP_01623756.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
8106]
gi|119453101|gb|EAW34270.1| histidine kinase response regulator hybrid protein [Lyngbya sp. PCC
8106]
Length = 377
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L + L GYEV NG A V+ P L+L DI MP +DG E+
Sbjct: 13 ILIVDDLPDNLRLLSETLSDRGYEVQCAINGKLALMAVQNAPPDLILLDIKMPGLDGYEV 72
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ V+F++ V + ++KPF + +++ V LTI
Sbjct: 73 CAELKSQVSTSNIPVIFLSALDDVFDKVKAFRVGGVDYITKPFQVEEVLARVENQLTI 130
>gi|85705604|ref|ZP_01036702.1| DNA-binding response regulator [Roseovarius sp. 217]
gi|85670029|gb|EAQ24892.1| DNA-binding response regulator [Roseovarius sp. 217]
Length = 241
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M Q IL+ +D ++R L+K L K G S N + ++E F L++ D++MP
Sbjct: 2 MTQPPHILIVDDHREIRDALVKYLEKNGIRATSAANAVAMDVAMKEGQFDLIVLDVMMPG 61
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR + ++ +T L KPF+ R+L+ + +L
Sbjct: 62 EDGLSVCRRLRAQG-GIPILMLTALGDETDRIVGLEVGADDYLPKPFNPRELLARIKAIL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRSN 124
>gi|313675771|ref|YP_004053767.1| two component transcriptional regulator, winged helix family
[Marivirga tractuosa DSM 4126]
gi|312942469|gb|ADR21659.1| two component transcriptional regulator, winged helix family
[Marivirga tractuosa DSM 4126]
Length = 227
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++LLAED+ + L ++L G++V C +G +A+ + + + LL+ D++MP+
Sbjct: 1 MKKEYQLLLAEDEPSLGLILKESLESRGFKVDHCEDGEAAWKCYQAKEYDLLILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG LA++ + D + ++F+T + + + KPF + +L+ V LL
Sbjct: 61 LDGFSLAQKVRKADGYIPIIFLTAKSTTNDVVEGFEKGGNDYIKKPFSMEELIVRVKALL 120
Query: 119 TIKN 122
K+
Sbjct: 121 ERKS 124
>gi|294630728|ref|ZP_06709288.1| DNA-binding response regulator [Streptomyces sp. e14]
gi|292834061|gb|EFF92410.1| DNA-binding response regulator [Streptomyces sp. e14]
Length = 237
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LLAEDD +R L +AL GYEV++ +G A + P +L+ D++MP +DG+++
Sbjct: 2 LLAEDDRAIRHALERALTLEGYEVIAVADGVEALAQAHRTPPDILVLDVMMPGIDGLQVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ +T A + KPF + ++ + LL
Sbjct: 62 RVLRAEGDRTPILMLTALVETADRIAGLDAGADDYVVKPFDVEEVFARLRALLRR 116
>gi|182437802|ref|YP_001825521.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|239988805|ref|ZP_04709469.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
gi|326778437|ref|ZP_08237702.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|178466318|dbj|BAG20838.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326658770|gb|EGE43616.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 226
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRSR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|148378611|ref|YP_001253152.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153931129|ref|YP_001382998.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153935657|ref|YP_001386545.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|153941463|ref|YP_001389974.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|148288095|emb|CAL82163.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152927173|gb|ABS32673.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152931571|gb|ABS37070.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|152937359|gb|ABS42857.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295318058|gb|ADF98435.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
gi|322804930|emb|CBZ02489.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 230
Score = 147 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA E + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119
>gi|330006922|ref|ZP_08305793.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
92-3]
gi|328535638|gb|EGF62088.1| putative sensory transduction protein RegX3 [Klebsiella sp. MS
92-3]
Length = 229
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I L ED+ + L+ L + G++V G A + + + + D+ +P++ G E
Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P L V+F+T + ++KPF R++ V +L
Sbjct: 65 LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121
>gi|239627954|ref|ZP_04670985.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518100|gb|EEQ57966.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++R + L GY V +G + + L + D++MP+MDGI
Sbjct: 5 RILLVEDDKEIREGVEIFLKSQGYVVFQAADGLEGLKALEDNEIDLAIVDVMMPKMDGIT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E D V+F++ + ++KPF +L+ VN L +
Sbjct: 65 MTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSHLRRYH 122
>gi|329936872|ref|ZP_08286551.1| two component system transcriptional regulator PhoP [Streptomyces
griseoaurantiacus M045]
gi|329303797|gb|EGG47681.1| two component system transcriptional regulator PhoP [Streptomyces
griseoaurantiacus M045]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +RR LI ALG AG+EV + A + V P +++ D+++P DG E
Sbjct: 8 RVLVVDDDPGIRRLLISALGFAGFEVDVAGDLTEALEHVDRRPPDVVVLDVMLPGADGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+F+T AV ++KPF + ++ + LL
Sbjct: 68 ILQLLRARAVDVPVLFLTARDAVEDRVRGLRLGGDDYVTKPFSVVEVGARLQALLRR 124
>gi|302868153|ref|YP_003836790.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
gi|302571012|gb|ADL47214.1| PAS sensor protein [Micromonospora aurantiaca ATCC 27029]
Length = 1382
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L AG+EV + +G +A D R L+++D++MP +DG++
Sbjct: 632 RVLVADDNADMREYLTRLLRSAGHEVRAVADGRAALDAARAHTPDLVVSDVMMPRLDGLQ 691
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---LL 118
L + V+ ++ A + + L KPF +L+ V L
Sbjct: 692 LVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVELA 751
Query: 119 TIKN 122
++N
Sbjct: 752 RLRN 755
>gi|172038291|ref|YP_001804792.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|171699745|gb|ACB52726.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+++ + + L + Y V ++G A D + + L++ D+++P++DGI
Sbjct: 2 KILVVEDDENIVIPIEEYLDEQNYIVEVASDGEVARDFLDVFDYDLIVLDVMLPKLDGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ ++ +T + L KPF L +L + LL
Sbjct: 62 LCQQLRANGCKTPILMLTARDTIQDRVKGLDAGADDYLIKPFDLEELSARIRALLRR 118
>gi|6531667|gb|AAF15533.1|AF196490_3 phosphate regulon response regulator PhoB [Caulobacter crescentus
CB15]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K GY V +G A E L++ D ++P++
Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERGPDLVILDWMLPKVS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR ++ ++ +T + KPF + +L V +L
Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|2832806|emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis]
Length = 369
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY ++ + A V+ L++ D++M M
Sbjct: 135 NASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMS 194
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 195 GFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 253
>gi|163938495|ref|YP_001643379.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163860692|gb|ABY41751.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILRDE-FEVDTAMNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|88807104|ref|ZP_01122616.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
gi|88788318|gb|EAR19473.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
Length = 265
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V S +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDRDMRELVSGHLEHSGFDVQSAEDGIKGQALALQYSPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|83955851|ref|ZP_00964393.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
gi|83839856|gb|EAP79033.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
Length = 239
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D ++R+ + L + G + N ++ E F L++ D++MP DG+
Sbjct: 6 RILVVDDHSEIRKSVTSYLERNGMRASAAGNAVEMDARLAEAHFDLIVLDVMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + ++ +T L+KPF+ ++LV +N +L
Sbjct: 66 ACRRLRKEG-HIPILMLTALGDDEDRIAGLDGGADDYLAKPFNPKELVARINAILRR 121
>gi|116626085|ref|YP_828241.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116229247|gb|ABJ87956.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L + G+ V + + G +K + L++ D+++P +DG E
Sbjct: 2 HILLVDDDAELASLLSEFLRREGFTVEAAHEGNRGLEKALQPGIDLVVLDVMLPGIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + V+ +T L+KPF+ R+L + +L
Sbjct: 62 ILKRLRQR-SKVPVLMLTARGEDVDRIVGLELGADDYLAKPFNPRELAARIRAILRR 117
>gi|325695127|gb|EGD37029.1| DNA-binding response regulator [Streptococcus sanguinis SK150]
Length = 234
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|228915802|ref|ZP_04079379.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228843844|gb|EEM88916.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACENGEDALDYINMATYDLIVLDIMIPGIN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|169334592|ref|ZP_02861785.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
17244]
gi|169259309|gb|EDS73275.1| hypothetical protein ANASTE_00995 [Anaerofustis stercorihominis DSM
17244]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R + L GY V NG + + E L + DI+MP MD
Sbjct: 1 MQHNILIVEDEKGIRDAIKIYLNNQGYNVFEAENGKEGLEVLNREDIHLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + R E D+ V+F++ + ++KPF +L+ VN +
Sbjct: 61 GITMTMRLRETY-DIPVIFLSAKSEDIDKITGLNIGADDYVTKPFASMELIARVNSQIRR 119
>gi|196031972|ref|ZP_03099386.1| DNA-binding response regulator [Bacillus cereus W]
gi|218904351|ref|YP_002452185.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|195994723|gb|EDX58677.1| DNA-binding response regulator [Bacillus cereus W]
gi|218539685|gb|ACK92083.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINLATYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|124008550|ref|ZP_01693242.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
23134]
gi|123985924|gb|EAY25781.1| transcriptional regulatory protein RprY [Microscilla marina ATCC
23134]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL EDD + +L Y V C NG A ++ +++ F L L D+++P+MD
Sbjct: 1 MKAHILFVEDDASLALVTKDSLELRDYRVTHCANGQLALEQFQQDNFDLCLFDVMLPQMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA + L+ ++ ++F+T A ++KPF + ++V ++ L
Sbjct: 61 GFTLAEKVRTLNHEIPIIFLTAKAMQEDKIAGLKLGADDYITKPFSIEEVVLKIEVFLKR 120
>gi|328952068|ref|YP_004369402.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
gi|328452392|gb|AEB08221.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
Length = 455
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L AGYEV + ++G +A + R L++TD+ MP M GIE
Sbjct: 3 TILVVDDEKNYLLVMETLLAGAGYEVFTADSGETALELTRRNDLDLVVTDMKMPRMSGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ PDL V+ +T + V ++ + KPF +++ + + L +++
Sbjct: 63 LLEQLKQVYPDLPVIMMTAYGTVEKAVEAMKKGAFDYILKPFKNEEILLTIAKALELRH 121
>gi|315647496|ref|ZP_07900600.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
protein) [Paenibacillus vortex V453]
gi|315277120|gb|EFU40458.1| transcriptional regulatory protein cutR (Defective melC1 suppressor
protein) [Paenibacillus vortex V453]
Length = 231
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ +R + K L + Y V +G A + + L++ D+ +P++DGIE
Sbjct: 2 KLLLVEDETALRNIIAKGLRRCNYSVDLAADGEEALEFYEVYDYDLIVLDLNLPKIDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++K++ ++ + L KPF +L + LL
Sbjct: 62 VLRRVRSNNNEIKILILSARTEIEDIIKGLDDGANDYLVKPFDFNELEARIRSLLRR 118
>gi|297569164|ref|YP_003690508.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
AHT2]
gi|296925079|gb|ADH85889.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfurivibrio alkaliphilus AHT2]
Length = 505
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 67/121 (55%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ +MR L +AL + GYEV NG A + V E L++TDI MPEMD
Sbjct: 4 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + ++ + P L V+ ITG+A V ++ + KPF + + + +++
Sbjct: 64 GIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVMRQ 123
Query: 121 K 121
+
Sbjct: 124 Q 124
>gi|320010411|gb|ADW05261.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRADGHAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|228966132|ref|ZP_04127195.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228793617|gb|EEM41157.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|229110642|ref|ZP_04240207.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228672815|gb|EEL28094.1| Two-component response regulator [Bacillus cereus Rock1-15]
Length = 236
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|160882234|ref|ZP_02063237.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
gi|156112386|gb|EDO14131.1| hypothetical protein BACOVA_00180 [Bacteroides ovatus ATCC 8483]
Length = 228
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + +P + ++ +T + D + KPF R+L + LL
Sbjct: 63 LAKEIRKTNPHIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|325687129|gb|EGD29152.1| DNA-binding response regulator [Streptococcus sanguinis SK72]
Length = 234
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEKQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|307326975|ref|ZP_07606165.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306887273|gb|EFN18269.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 226
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPEGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|302534786|ref|ZP_07287128.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302443681|gb|EFL15497.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 229
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|300857676|ref|YP_003782659.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|300685130|gb|ADK28052.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|302205415|gb|ADL09757.1| Putative two component system response regulator [Corynebacterium
pseudotuberculosis C231]
gi|302329969|gb|ADL20163.1| Putative two component system response regulator [Corynebacterium
pseudotuberculosis 1002]
gi|308275653|gb|ADO25552.1| Putative two component system response regulator [Corynebacterium
pseudotuberculosis I19]
Length = 231
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++ + L L K G+EVV +G +A + + ++L D+++P M G +
Sbjct: 3 TILLVEDEESLADPLAFLLRKEGFEVVVAGDGPTALVEFEKNDIDIVLLDLMLPGMSGTD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 63 VCKRLRKV-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|253682308|ref|ZP_04863105.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
gi|253562020|gb|EES91472.1| regulatory protein VanR [Clostridium botulinum D str. 1873]
Length = 232
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD ++R + L G +V +G A ++EE L+L DI+MP+MDGI+
Sbjct: 6 VLVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKA 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ ++ ++ + ++KPF+ +L+ V L
Sbjct: 66 TFKIREK-KDIPIIMLSAKSEDTDKVLGLNIGADDYVTKPFNPLELIARVKSQLRR 120
>gi|302875608|ref|YP_003844241.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307690139|ref|ZP_07632585.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302578465|gb|ADL52477.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 222
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ EDDD +R+ + L K G+E++ +G SA +K + L++ D+++P+++
Sbjct: 1 MN-KILVVEDDDRIRKLICNYLSKEGFEIIEAVDGVSAIEKFKNNNIDLIVLDLMLPKLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E+ D+ ++ +T + ++KPF + LV ++ +L
Sbjct: 60 GITVCSKIREI-SDVHIIMLTAKSQEEDKLIGYETGADDYITKPFSPKVLVAKIKAVLKR 118
>gi|229084804|ref|ZP_04217062.1| Two-component response regulator [Bacillus cereus Rock3-44]
gi|228698487|gb|EEL51214.1| Two-component response regulator [Bacillus cereus Rock3-44]
Length = 250
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+KILL +D+ + L+ L K + + + NGA ++ PF ++L D+++P++D
Sbjct: 16 TEKILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDID 75
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + ++F+T ++ ++KPF+ ++ +N L
Sbjct: 76 GFELCRQIRN-YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 134
Query: 121 KN 122
++
Sbjct: 135 QH 136
>gi|225570853|ref|ZP_03779876.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
15053]
gi|225160315|gb|EEG72934.1| hypothetical protein CLOHYLEM_06957 [Clostridium hylemonae DSM
15053]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+A+D+ + + L GY V+ NGA +K+ ++L D+ MP +D
Sbjct: 1 MEYKILIADDEQGIIQLLKDYFEIQGYRVLEALNGAEVLEKLAR-KPDIILLDVSMPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR ++F+T + + KPF + +L V L
Sbjct: 60 GFEVCRRIRS-HISCPILFLTARIEEQDRINGLKLGGDDYIMKPFSIEELGARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|225017308|ref|ZP_03706500.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
DSM 5476]
gi|224949925|gb|EEG31134.1| hypothetical protein CLOSTMETH_01234 [Clostridium methylpentosum
DSM 5476]
Length = 238
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ + L + G+ + G A + E ++ D+++P +D
Sbjct: 1 MKKTILLVDDEAHILELLKYTMENEGFSTLQAETGEQALKLLGRERVDAVILDLMLPGID 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + +L V+ +T + L KPF +R+LV V +L
Sbjct: 61 GLEVLKNIRVTPGTKNLPVLMLTAKSEEFDRVIGLELGADDYLCKPFFVRELVARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|194364248|ref|YP_002026858.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|194347052|gb|ACF50175.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
Length = 239
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60
+++L+ EDD + L LG GY+V +G + ++ L+ D+++P +D
Sbjct: 3 TKRVLIVEDDAHIADLLRMHLGDEGYDVAHAASGDGGLRLLEQDGPWDALVLDVMLPGVD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +RA + + ++ I+ + L+KPF + +LV V LL
Sbjct: 63 GLQVCQRARAMARYVPIIIISARGSETQRIVGLELGADDYLAKPFSMPELVARVRALLRR 122
>gi|158334336|ref|YP_001515508.1| two-component response regulator [Acaryochloris marina MBIC11017]
gi|158304577|gb|ABW26194.1| two-component response regulator, putative [Acaryochloris marina
MBIC11017]
Length = 375
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L + L K GY+V ++G K ++ +L++ D +MP +DGI
Sbjct: 3 KILIIDDDPITQLLLRRTLEKQGYQVTVASDGQEGLSKAQQLCPALIICDWMMPVLDGIG 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + +T + + + L+KP + +L V L +
Sbjct: 63 VCQQLKSNPQLSATFFILLTSRSDLEDRIAGLNAGADEFLTKPIDMSELRARVRAGLRLY 122
Query: 122 N 122
+
Sbjct: 123 H 123
>gi|229160872|ref|ZP_04288862.1| Two-component response regulator vanR [Bacillus cereus R309803]
gi|228622609|gb|EEK79445.1| Two-component response regulator vanR [Bacillus cereus R309803]
Length = 242
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFVNANLMREGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDIDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|254380718|ref|ZP_04996084.1| two-component systen response regulator [Streptomyces sp. Mg1]
gi|194339629|gb|EDX20595.1| two-component systen response regulator [Streptomyces sp. Mg1]
Length = 243
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 56/116 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ +D+ ++R + L GYEV +G + +V ++ D++MP +DG+
Sbjct: 19 QRILVVDDEPEVRAAVEDGLAVEGYEVRGAADGLAGLSQVAAWEPDAVVLDVMMPVLDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R+ + ++ +T +V+ D L KPF L +LV V LL
Sbjct: 79 GVCRQLRAMGDRTPILVLTALDSVSERVDGLEAGADDYLVKPFALDELVARVRALL 134
>gi|163815763|ref|ZP_02207134.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
gi|158448904|gb|EDP25899.1| hypothetical protein COPEUT_01943 [Coprococcus eutactus ATCC 27759]
Length = 239
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 62/118 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K L AGYEV +C +G A + + E + L++ D+ +P +DG+E
Sbjct: 15 RLLIVEDEKQICDMVAKGLYDAGYEVDTCYDGEEALECILSEEYDLIVLDLNLPGVDGME 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + + KV+ ++ +A + + KPFHL++L + L K
Sbjct: 75 ILKELRQQNEETKVIILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 132
>gi|158340539|ref|YP_001521533.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158310780|gb|ABW32394.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 248
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ +RR L L K GY+V + +G A D ++ L++ D++MP++DG +
Sbjct: 15 ILVADDEVPIRRILGTRLSKIGYQVYTAADGVEALDVFYDQCPDLIILDVMMPKLDGYGV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T + V + KPF ++L + V +L
Sbjct: 75 CQAVRK-TSRVPIIMLTALSEVKDRITGLEMGADDYMVKPFSPKELESRVRCILRR 129
>gi|325283717|ref|YP_004256258.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
gi|324315526|gb|ADY26641.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ ED+ ++ RF+ LG GY +G + K RE L++ D+++P
Sbjct: 1 MERKPLVLVIEDEKEIARFIELELGAEGYTTDVAYDGVTGLSKFREVAPDLVVLDLMLPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ARR + + ++ +T + + L KPF + +L+ V L
Sbjct: 61 LDGLEVARRIRK-TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRVN 123
>gi|317474497|ref|ZP_07933771.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316909178|gb|EFV30858.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1239
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L + + V + ++G A++ + E L+++D+VMP MDG E
Sbjct: 995 HILIVEDNHALREFMVHPLREH-FRVTTADDGQQAWEMMNELQPDLVVSDVVMPRMDGFE 1053
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T + L+KPF + L + + ++ +
Sbjct: 1054 LCRRIKSTYETSHIPVILLTALSDKTNQLHGLELGADNYLTKPFDMALLASRITSIIRNR 1113
>gi|239981886|ref|ZP_04704410.1| two-component system response regulator [Streptomyces albus J1074]
gi|291453741|ref|ZP_06593131.1| two-component system response regulator [Streptomyces albus J1074]
gi|291356690|gb|EFE83592.1| two-component system response regulator [Streptomyces albus J1074]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D ++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRETKPDLVLLDQMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|237799587|ref|ZP_04588048.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022443|gb|EGI02500.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 227
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ + LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|196046810|ref|ZP_03114032.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196022345|gb|EDX61030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|81428113|ref|YP_395112.1| two-component response regulator transcriptional regulator
[Lactobacillus sakei subsp. sakei 23K]
gi|4104599|gb|AAD10261.1| putative response regulator [Lactobacillus sakei subsp. sakei 23K]
gi|78609754|emb|CAI54800.1| Two-component system, response regulator (possibly involved in
phosphate regulation) [Lactobacillus sakei subsp. sakei
23K]
Length = 237
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L + ++V++ +GA A ++ F ++ D+++P++DGI
Sbjct: 2 KTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E +M +T ++KPF R+++ + + +
Sbjct: 62 AVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRA-IERR 119
>gi|84498453|ref|ZP_00997223.1| response regulator receiver [Janibacter sp. HTCC2649]
gi|84381196|gb|EAP97080.1| response regulator receiver [Janibacter sp. HTCC2649]
Length = 226
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ L L K GYEV NG A + L+L D+++P +
Sbjct: 1 MT-RILVVEDEVSFSDPLSYLLRKEGYEVSVAENGNDALTEFDSGGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GVDVCRALRQR-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIKAVLRR 118
>gi|323351005|ref|ZP_08086662.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
gi|322122729|gb|EFX94438.1| DNA-binding response regulator [Streptococcus sanguinis VMC66]
Length = 234
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|229084948|ref|ZP_04217200.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
gi|228698264|gb|EEL50997.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG E
Sbjct: 3 KILIVDDDPHIRELVAVFLEREGFQTYEAIDGIDALGKIAEVKIDMVILDIMMPNMDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D+ ++ +T + L KPF +LV V LL
Sbjct: 63 LCYELR-RYYDIPLLMLTAKGETSQKVKGFQLGTDDYLVKPFDPLELVVRVKALLKR 118
>gi|154492299|ref|ZP_02031925.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
43184]
gi|154087524|gb|EDN86569.1| hypothetical protein PARMER_01933 [Parabacteroides merdae ATCC
43184]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+EV N+G + ++ V++E F LL+ DI+MP+M+G++
Sbjct: 3 KILLVEDEINIASFIERGLQEFGHEVRVANDGQAGWELVQQEDFQLLILDIIMPKMNGLQ 62
Query: 64 LARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + V+ +T + L KPF ++L + LL
Sbjct: 63 LCKQYRQTYGYQSPVIMLTALGTTDDIVNGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|77408155|ref|ZP_00784901.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77173255|gb|EAO76378.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R ++K L K Y V S +NG A V + +++ D++MP+MDG
Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T AV L KPF +L+ + +L N
Sbjct: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120
>gi|302535686|ref|ZP_07288028.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302444581|gb|EFL16397.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 255
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G EV S +GA A RE +++ D+++P+MDG+
Sbjct: 28 RVLVVDDEAPLSELLSMALRYEGCEVRSAGDGAGAVRAAREFRPDVVVLDVMLPDMDGLA 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P + V+F+T +V ++KPF L ++V + L+
Sbjct: 88 VLGRLRREIPQVPVLFLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRR 144
>gi|254424941|ref|ZP_05038659.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196192430|gb|EDX87394.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 216
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 42/120 (35%), Positives = 68/120 (56%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+A+D+ +R + +AL GYEV + +G++A ++++E P LLL DI MP M G
Sbjct: 3 NASILVADDEKSIRLTVAQALSSQGYEVATAIDGSTALEQLKETPTDLLLLDIQMPGMTG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE+ ++A P LKV+ ++ +V ++ L KPF +L VNR+L +
Sbjct: 63 IEVLQKAITQQPSLKVVMVSAHGSVDNAVEAMKLGAVDYLQKPFTPSELRELVNRVLERE 122
>gi|153954118|ref|YP_001394883.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219854730|ref|YP_002471852.1| hypothetical protein CKR_1387 [Clostridium kluyveri NBRC 12016]
gi|146346999|gb|EDK33535.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219568454|dbj|BAH06438.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 232
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L KAGYEV S NG A + +L++ D+++P++ G
Sbjct: 5 KKILVVDDEQKIVDVIRAYLEKAGYEVHSAYNGTEAVKLFEKISPALIVLDLMLPDISGE 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ +T + ++KPF + LV V L
Sbjct: 65 DICKMLRKK-SRVPIIMLTAKVDEKTVLEGFNIGADDYVTKPFSPKQLVARVMAHLRR 121
>gi|332531237|ref|ZP_08407150.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
gi|332039344|gb|EGI75757.1| response regulator receiver [Hylemonella gracilis ATCC 19624]
Length = 247
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +DD D+R L + LG G +G +R P L++ D+++P DG
Sbjct: 4 NDRILVVDDDPDIRALLAEYLGGQGLRADCAADGRQMRATLRAAPVDLVVLDLMLPGEDG 63
Query: 62 IELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + V+ +T L KPF R+LV + +L
Sbjct: 64 LSLLRWLRDSEWAHVPVLMLTARGDNVDRIIGLEMGADDYLPKPFEPRELVARIRAVLRR 123
Query: 121 KN 122
+
Sbjct: 124 TH 125
>gi|323483412|ref|ZP_08088800.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
WAL-14163]
gi|323691088|ref|ZP_08105369.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
gi|323403266|gb|EGA95576.1| hypothetical protein HMPREF9474_00549 [Clostridium symbiosum
WAL-14163]
gi|323504857|gb|EGB20638.1| regulatory protein VanR [Clostridium symbiosum WAL-14673]
Length = 246
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++R + L GY V +G + + E L + DI+MP MDG+
Sbjct: 11 RILLVEDDKEIREGIEIFLRGQGYRVFQAADGVEGLEILEREEIHLAIVDIMMPRMDGVT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E D V+F++ + ++KPF +L+ VN L N
Sbjct: 71 MVIRLREHY-DFPVIFLSAKSEEVDKIMGLNMGADDYITKPFTPMELLARVNSHLRRYN 128
>gi|259503210|ref|ZP_05746112.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
antri DSM 16041]
gi|259168802|gb|EEW53297.1| phosphate regulon transcriptional regulator PhoB [Lactobacillus
antri DSM 16041]
Length = 226
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KILL ED++ + F+I L GYEV+ +G A + +L+L D ++P
Sbjct: 1 MQKVKILLVEDEESLASFMITELELEGYEVIWAKDGREALTLFEKTHVTLILLDWMLPGY 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + RR + D+ V+ IT + A + ++KPF + +L+ + +L
Sbjct: 61 DGLTVLRRIRQ-TSDVPVIMITARSQTADIRLALDQGLDDYITKPFEIEELLARIRVILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|239904903|ref|YP_002951641.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
gi|239794766|dbj|BAH73755.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
Length = 227
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ EDD+D+ L L AG+ + +G K R P + ++ D+++P +
Sbjct: 1 MSKDSILIVEDDEDIVELLAFNLQSAGFAAETARDGYEGLAKARRNPPAAVILDLMLPGL 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ + ++ +T + KPF R+LV + +
Sbjct: 61 DGFEVCKELKRDPKTASAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELVLRLRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|291539027|emb|CBL12138.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+D +R + K GYE+ ++G A + R+E F L++ D++MPE+DG
Sbjct: 2 ERILVVDDEDKIRAIIRKYGEFEGYEIAEAHDGMEAVEICRKEDFDLIILDVMMPELDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + ++ V+ ++ + KPF R+L+ V +++ N
Sbjct: 62 STCREIRK-FKEIPVIMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKVVISRNN 120
>gi|212697066|ref|ZP_03305194.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
7454]
gi|212675841|gb|EEB35448.1| hypothetical protein ANHYDRO_01631 [Anaerococcus hydrogenalis DSM
7454]
Length = 240
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KILL ED+ + + + L K Y+V +G + E L+L D+++P++
Sbjct: 4 MNKIKILLIEDEKGISKIMKSYLEKEDYKVFQAFDGKEGLEIFESEDIDLVLLDLMIPKI 63
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G +L + ++ V+ +T + + ++KPF ++L+ + +L
Sbjct: 64 SGEDLIKEIRNK-SNVPVIMVTAKVSEDDIVNGLKLGADDYVTKPFSPKELMQRIKTVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|218898271|ref|YP_002446682.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218542022|gb|ACK94416.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|154504864|ref|ZP_02041602.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
gi|153794747|gb|EDN77167.1| hypothetical protein RUMGNA_02374 [Ruminococcus gnavus ATCC 29149]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ + + + +L + EV +G A + + L+L D+++P+MDG
Sbjct: 3 KKKILVVDDEKLIVKGIRFSLEQDDMEVDCAYDGEEALQYAKNCEYDLVLLDVMLPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + E D+ ++ +T + ++KPF++ ++ + ++
Sbjct: 63 FQVCQAIRE-FSDMPIVMLTAKSEDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 120
>gi|301053448|ref|YP_003791659.1| response regulator [Bacillus anthracis CI]
gi|300375617|gb|ADK04521.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 232
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + V L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIVNYNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|296268693|ref|YP_003651325.1| winged helix family two component transcriptional regulator
[Thermobispora bispora DSM 43833]
gi|296091480|gb|ADG87432.1| two component transcriptional regulator, winged helix family
[Thermobispora bispora DSM 43833]
Length = 222
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GY+V +G A ++ L++ D+ +PEMDG+E+
Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR V+ +T ++KPF L +L+ V LL
Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|229155571|ref|ZP_04283679.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
gi|228627889|gb|EEK84608.1| DNA-binding response regulator [Bacillus cereus ATCC 4342]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MD
Sbjct: 1 MIPNILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++ +T + L KPF +LV V LL
Sbjct: 61 GFDVCFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 119
>gi|254430407|ref|ZP_05044110.1| two-component response regulator, phosphate [Cyanobium sp. PCC
7001]
gi|197624860|gb|EDY37419.1| two-component response regulator, phosphate [Cyanobium sp. PCC
7001]
Length = 238
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 12/132 (9%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE------------EPFS 48
M ++L+ EDD+ +R L +AL G+ V +C NG A + ++ E F+
Sbjct: 1 MRARLLVVEDDETIRETLQEALELEGFSVTACANGRDALNALQRSARPQPGRDDPGEGFA 60
Query: 49 LLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108
L++ D+++P + G+++ R ++ ++ + L KPF +R
Sbjct: 61 LVVLDLMLPGLGGLDVCRALRAASNFTPILVVSARDSETDRVLGLEVGADDYLVKPFGMR 120
Query: 109 DLVNEVNRLLTI 120
+LV LL
Sbjct: 121 ELVARCRALLRR 132
>gi|196042673|ref|ZP_03109912.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225865148|ref|YP_002750526.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|196026157|gb|EDX64825.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225786004|gb|ACO26221.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 224
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|167648501|ref|YP_001686164.1| two component transcriptional regulator [Caulobacter sp. K31]
gi|167350931|gb|ABZ73666.1| two component transcriptional regulator, winged helix family
[Caulobacter sp. K31]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K GY V +G A E L++ D ++P++
Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYVVGVAGDGEEALTMASERAPDLVILDWMLPKVS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR ++ ++ +T + + KPF + +L V +L
Sbjct: 61 GIEVCRRLRGRSETRNVPIIMLTARGEESDRIRGLDTGADDYVVKPFSMIELTARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|49184828|ref|YP_028080.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|165870203|ref|ZP_02214859.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167638281|ref|ZP_02396558.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170705986|ref|ZP_02896448.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177650778|ref|ZP_02933675.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190566316|ref|ZP_03019234.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|229604715|ref|YP_002866357.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254684552|ref|ZP_05148412.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254721309|ref|ZP_05183099.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254734855|ref|ZP_05192567.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741256|ref|ZP_05198944.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254755510|ref|ZP_05207544.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254760046|ref|ZP_05212070.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|49178755|gb|AAT54131.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164714091|gb|EDR19612.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167513582|gb|EDR88951.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170128988|gb|EDS97853.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|172083239|gb|EDT68300.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190562451|gb|EDV16418.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|229269123|gb|ACQ50760.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 254
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L G++ +G A K+ + +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|332358234|gb|EGJ36062.1| DNA-binding response regulator [Streptococcus sanguinis SK355]
Length = 234
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTYVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|325263497|ref|ZP_08130231.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
gi|324031206|gb|EGB92487.1| DNA-binding response regulator SrrA [Clostridium sp. D5]
Length = 226
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + L + GY V+ +G A D ++ +L++ D++MP+
Sbjct: 1 MEKVKILVVDDESRMRKLVKDFLTREGYLVLEAGDGMEAMDLFYEDKDIALVILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + ++ +T + + +SKPF + LV V +L
Sbjct: 61 MDGWQVCREIRE-HSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|260430664|ref|ZP_05784636.1| phosphate regulon transcriptional regulatory protein PhoB
[Silicibacter lacuscaerulensis ITI-1157]
gi|260418105|gb|EEX11363.1| phosphate regulon transcriptional regulatory protein PhoB
[Silicibacter lacuscaerulensis ITI-1157]
Length = 228
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ R + L G+ VV NG A +++E P L+L D ++P + GIE
Sbjct: 6 TILVVEDEPSQREIIRYNLEAEGFTVVQAENGDEALLQIKEAPPDLILLDWMLPGVSGIE 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ ++ + ++KP+ + +L+ V
Sbjct: 66 ICRQLKMTAATRAIPVIMLSARSDEVDKVRGLETGADDYVTKPYSVIELMARVKSQFRR 124
>gi|257866993|ref|ZP_05646646.1| two component transcriptional regulator [Enterococcus casseliflavus
EC30]
gi|257873327|ref|ZP_05652980.1| two component transcriptional regulator [Enterococcus casseliflavus
EC10]
gi|257801049|gb|EEV29979.1| two component transcriptional regulator [Enterococcus casseliflavus
EC30]
gi|257807491|gb|EEV36313.1| two component transcriptional regulator [Enterococcus casseliflavus
EC10]
Length = 228
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL ED+ + + L K Y V +G + D + LL+ DI++P++DGI
Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDLLVLDIMLPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + V L+KPF +++L+ + L K+
Sbjct: 62 LLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLSRRKD 120
>gi|228920611|ref|ZP_04083956.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839241|gb|EEM84537.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 242
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFVNVNLMQEGFKVFSAHNGEEALEIINNNRIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|225862542|ref|YP_002747920.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|225787819|gb|ACO28036.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|261410069|ref|YP_003246310.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261286532|gb|ACX68503.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 225
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD +R L+ L GY V + +G A + EE L + D++MP DG +
Sbjct: 3 HILIADDDAHIRELLLYHLQTEGYTVFTAADGEEASALLAEEQVHLAVVDVMMPNKDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D+ V+ +T + A L+KPF R+L+ + LL
Sbjct: 63 LCEEIR-RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRR 118
>gi|169829942|ref|YP_001700100.1| transcriptional regulatory protein cutR [Lysinibacillus sphaericus
C3-41]
gi|168994430|gb|ACA41970.1| Transcriptional regulatory protein cutR (Defective melC1 suppressor
protein) [Lysinibacillus sphaericus C3-41]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + R + K L K+GY V + +G A + + L++ D+ +P+MDGIE
Sbjct: 2 KLLLVEDEAVLSRIISKGLKKSGYAVDTAFDGKEALELFEINEYDLIILDLNLPKMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+K++ ++ +A+ L KPF ++L + LL
Sbjct: 62 VLEQIRVQNEDVKILILSARSAIHDKIMGLDCGANDYLIKPFDFQELDARIRNLLRR 118
>gi|30261986|ref|NP_844363.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47777985|ref|YP_018600.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|30256612|gb|AAP25849.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47551690|gb|AAT31075.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
Length = 228
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L G++ +G A K+ + +++ DI+MP MDG ++
Sbjct: 8 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 68 CFELRKYY-DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>gi|17546253|ref|NP_519655.1| phosphate regulon two-component response regulator transcription
regulator protein [Ralstonia solanacearum GMI1000]
gi|17428550|emb|CAD15236.1| probable phosphate regulon two-component response regulator
transcription regulator protein [Ralstonia solanacearum
GMI1000]
Length = 237
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ A+ E + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|76788272|ref|YP_330651.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|77405138|ref|ZP_00782237.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|77410895|ref|ZP_00787252.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|76563329|gb|ABA45913.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|77163113|gb|EAO74067.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|77176281|gb|EAO79051.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
Length = 223
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R ++K L K Y V S +NG A V + +++ D++MP+MDG
Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T AV L KPF +L+ + +L N
Sbjct: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRTN 120
>gi|313889059|ref|ZP_07822717.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312844932|gb|EFR32335.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 230
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ D+ + L GY+V + +GA A + ++E L + DI+MP MD
Sbjct: 1 MNYTILVCDDERDILDAIKIYLKAEGYKVFTAEDGARALEIIKENEIHLAIIDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L + E ++ ++ ++ V ++KPF+ +L VN L+
Sbjct: 61 GITLIMKMREKT-NIPIIVLSAKGEVTDKIVGLNVGADDYITKPFNAVELTARVNSLIRR 119
>gi|229015889|ref|ZP_04172855.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229022109|ref|ZP_04178662.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228739199|gb|EEL89642.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228745402|gb|EEL95438.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 229
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNAALLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ L KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTAKDSLEDRVKGLDFGGDDYLVKPFQAPELKARIRALLRR 123
>gi|229194886|ref|ZP_04321669.1| Two-component response regulator [Bacillus cereus m1293]
gi|228588590|gb|EEK46625.1| Two-component response regulator [Bacillus cereus m1293]
Length = 229
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILCDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQRIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|226310397|ref|YP_002770291.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093345|dbj|BAH41787.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 231
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + + G++V C++G+ +SL++ D+ +P MD
Sbjct: 1 MSSRILIIEDETTIAQLERDYFELNGFQVDLCHSGSEGLPLAINGDYSLIIVDLQLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ ++ ++ ++ + ++KPF +LV LT
Sbjct: 61 GFELCSQIRQV-KEVPILIVSAKKEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLTR 119
>gi|291326910|ref|ZP_06126309.2| phosphate regulon transcriptional regulatory protein PhoB
[Providencia rettgeri DSM 1131]
gi|291312483|gb|EFE52936.1| phosphate regulon transcriptional regulatory protein PhoB
[Providencia rettgeri DSM 1131]
Length = 244
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + ++ SA ++ + L+L D ++P
Sbjct: 16 MARRILVVEDEAPIREMVCFVLEQNGFQPIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 75
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ + D+ VM +T L KPF ++L+ V +L
Sbjct: 76 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 135
Query: 119 TI 120
Sbjct: 136 RR 137
>gi|209544812|ref|YP_002277041.1| two component transcriptional regulator PhoB, winged helix family
[Gluconacetobacter diazotrophicus PAl 5]
gi|209532489|gb|ACI52426.1| two component transcriptional regulator PhoB, winged helix family
[Gluconacetobacter diazotrophicus PAl 5]
Length = 243
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD+ + L L K GYEV +G A +V L++ D ++P + G+++
Sbjct: 20 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 79
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++ +T A A + ++KP + L + L+
Sbjct: 80 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRR 137
>gi|163854114|ref|YP_001642157.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens PA1]
gi|163665719|gb|ABY33086.1| phosphate regulon transcriptional regulatory protein PhoB
[Methylobacterium extorquens PA1]
Length = 239
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED++ + L L G++V G A ++ E L+L D ++P + G
Sbjct: 8 SAHILIVEDEESLTTLLRYNLEAEGFQVDVAVRGDEADLRLHETTPDLVLLDWMVPGLSG 67
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL RR L V+ +T + + KPF + +L+ V LL
Sbjct: 68 IELCRRIRARRETERLPVIMLTARGEETDRVRGLSTGADDYVVKPFSVPELLARVRALLR 127
Query: 120 I 120
Sbjct: 128 R 128
>gi|92113096|ref|YP_573024.1| two component transcriptional regulator [Chromohalobacter
salexigens DSM 3043]
gi|91796186|gb|ABE58325.1| two component transcriptional regulator, winged helix family
[Chromohalobacter salexigens DSM 3043]
Length = 227
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ + R + L ++GY +G + + +L+L D+++P D
Sbjct: 1 MNDTILIVEDEPKIARLVADYLQQSGYATHHLAHGDEVMPWLADHAPALILLDLMLPGTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L RR + P L V+ +T + KPF R++V V +L
Sbjct: 61 GLTLCRRIGDQYPALPVIMLTARVEEVDRLLGLELGADDYICKPFSPREVVARVKAVLRR 120
>gi|47567988|ref|ZP_00238694.1| two-component response regulator [Bacillus cereus G9241]
gi|47555291|gb|EAL13636.1| two-component response regulator [Bacillus cereus G9241]
Length = 229
Score = 147 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|310815788|ref|YP_003963752.1| two component transcriptional regulator [Ketogulonicigenium vulgare
Y25]
gi|308754523|gb|ADO42452.1| two component transcriptional regulator [Ketogulonicigenium vulgare
Y25]
Length = 243
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++R L + L G+ V + ++ E L++ D+++P+
Sbjct: 1 MN-HILIVDDDPEIRSLLSRYLSGQGFRVTMAASRRECMQRLSHETPDLVVLDVLLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + +P + V+ +T L KPF+ R+LV + +L
Sbjct: 60 GLEMCRELSSANPHVPVVLLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119
>gi|298242241|ref|ZP_06966048.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297555295|gb|EFH89159.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 224
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +R FL + L + Y V + +G A K+ + L+L DI++P+++GI +
Sbjct: 3 ILIVEDEAKIRHFLRQGLLEESYAVDTAVDGEEALYKLDINEYDLVLLDIMLPKVNGIAV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ +T VA L+KPF +L + L
Sbjct: 63 CKALREKSSSPPILLLTAKDGVADKVLGLDAGADDYLTKPFSFDELTARIRALFRR 118
>gi|15805769|ref|NP_294466.1| response regulator [Deinococcus radiodurans R1]
gi|94986415|ref|YP_605779.1| two component transcriptional regulator [Deinococcus geothermalis
DSM 11300]
gi|6458452|gb|AAF10321.1|AE001930_2 response regulator [Deinococcus radiodurans R1]
gi|94556696|gb|ABF46610.1| two component transcriptional regulator, winged helix family
[Deinococcus geothermalis DSM 11300]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ ED+ D+ RF+ L GY +G + K RE L++ D+++P
Sbjct: 1 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ARR + + ++ +T + + L KPF + +L+ V L
Sbjct: 61 LDGLEVARRIRK-TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRVN 123
>gi|294630055|ref|ZP_06708615.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
gi|292833388|gb|EFF91737.1| DNA-binding response regulator RegX3 [Streptomyces sp. e14]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|293611083|ref|ZP_06693382.1| predicted protein [Acinetobacter sp. SH024]
gi|292826735|gb|EFF85101.1| predicted protein [Acinetobacter sp. SH024]
gi|325123407|gb|ADY82930.1| transcriptional regulator protein (OmpR family),response regulator
in two-component regulatory system with BaeS, regulates
RNA synthesis [Acinetobacter calcoaceticus PHEA-2]
Length = 228
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|218681085|ref|ZP_03528982.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium etli CIAT 894]
Length = 233
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GIE
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|209526062|ref|ZP_03274594.1| two component transcriptional regulator, LuxR family [Arthrospira
maxima CS-328]
gi|209493450|gb|EDZ93773.1| two component transcriptional regulator, LuxR family [Arthrospira
maxima CS-328]
Length = 222
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD R + L +GY V+S NG A + V + L++TDI MPEMD
Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL +R L V+F+T + L KPF L +L + LL
Sbjct: 61 GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELDELGVVIRALL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|307153326|ref|YP_003888710.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
gi|306983554|gb|ADN15435.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 804
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD ++ + AL Y V +G + + + L++ D+++P++DGI+
Sbjct: 2 KLLLVEDDQNLAEVIKGALKSQHYLVDLATDGQTGLEFAEMFEYDLIMLDLMLPKLDGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ +T + L KPF++++L+ V LL
Sbjct: 62 FCQQRRKQGDLTPILLVTAQDDATYKVRALDAGADDYLVKPFNIQELLARVRALLRR 118
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+++ +DD ++ L G+ + + ++ + + LL+ D+ MPE+ G
Sbjct: 507 TAKLMIVDDDPNLLEITRTYLEPWGFTLTLLQDPKQFWETLEQTNPDLLILDVEMPEISG 566
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
I+L + +L V+F++ + + + + KP DLV+ +
Sbjct: 567 IDLCQVVRNDPHWHELPVLFLSAHTSAKVVREGFQAGADDYIYKPIVDSDLVSRI 621
Score = 64.8 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 2/111 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP--EMDGIE 63
L+ ++D + + + G + N + A + ++L D+ P +G+E
Sbjct: 386 LIVDNDFALAQAIATQAKIWGLKSEIACNLSQAKRAIASFQPDVILLDLFFPDTGENGLE 445
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L + ++L P + + +T + L KP +V +
Sbjct: 446 LLQELSQLIPSIPTIVLTAQNDFSFRVKVARLGGVGFLQKPLAPERIVEAI 496
>gi|8100674|gb|AAF72358.1|AF192329_19 VanRB [Enterococcus faecalis]
Length = 220
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDDD + + L +AGY+V +C +G AY K E + L++ DI++P M+
Sbjct: 1 MSIRILLVEDDDHICNTVRGFLAEAGYQVDACTDGNEAYTKFYENTYQLVILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D ++ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRAKN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMQILLKRVEALLRR 119
>gi|94314049|ref|YP_587258.1| OmpR/winged helix family two component transcriptional regulator
[Cupriavidus metallidurans CH34]
gi|93357901|gb|ABF11989.1| two component transcriptional regulator, OmpR/winged helix family
[Cupriavidus metallidurans CH34]
Length = 223
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + R L L +AGY V ++G A E P+ ++ D+ +P++DG+
Sbjct: 2 RILLIEDEATLARQLADTLSQAGYVVDHASDGIDAEHLGTENPYDAVILDLGLPKLDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + V+ +T + + L+KPF +L+ + L+
Sbjct: 62 VLKRWRQAGNGVPVLILTARDSWVEKVEGIDAGADDYLTKPFRAEELLARIRALIRR 118
>gi|311031011|ref|ZP_07709101.1| two-component response regulator [Bacillus sp. m3-13]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +L+ +D+ ++R + L G V+ +G A + + E L+L D++MP +DG
Sbjct: 3 NYTVLVVDDEKEIRDAIEIYLKNEGVRVLKAQDGVEALEMLHENEVHLILLDVMMPRLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I R E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 63 ISATHRIREE-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120
>gi|297627027|ref|YP_003688790.1| Response regulator receiver [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
gi|296922792|emb|CBL57370.1| Response regulator receiver [Propionibacterium freudenreichii
subsp. shermanii CIRM-BIA1]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ R + L + G+ V + +G + L+L D++MP +
Sbjct: 1 MS-RILIIEDEESYRDAMSFMLDREGFAVAAAPDGEQGLAEFDRNGADLVLLDLMMPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + D+ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GIEVCKALRQR-SDVPVIMVTARDSEVDKVVGLELGADDYVTKPFSQRELVARIRAVLRR 118
>gi|237716432|ref|ZP_04546913.1| two-component system response regulator [Bacteroides sp. D1]
gi|262408032|ref|ZP_06084580.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|294643327|ref|ZP_06721151.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
SD CC 2a]
gi|294806113|ref|ZP_06764966.1| putative transcriptional activator protein Irlr [Bacteroides
xylanisolvens SD CC 1b]
gi|229444079|gb|EEO49870.1| two-component system response regulator [Bacteroides sp. D1]
gi|262354840|gb|EEZ03932.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|292641333|gb|EFF59527.1| putative transcriptional activator protein Irlr [Bacteroides ovatus
SD CC 2a]
gi|294446701|gb|EFG15315.1| putative transcriptional activator protein Irlr [Bacteroides
xylanisolvens SD CC 1b]
Length = 228
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + +P++ ++ +T + D + KPF R+L + LL
Sbjct: 63 LAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|225376300|ref|ZP_03753521.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
16841]
gi|225211946|gb|EEG94300.1| hypothetical protein ROSEINA2194_01938 [Roseburia inulinivorans DSM
16841]
Length = 227
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L + YEV+ +G A D +E+ +L++ D++MP+++G
Sbjct: 5 KILVVDDESRMRKLVRDFLVREDYEVLEAGDGEEALDIFYKEKNIALIILDVMMPKINGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R E + ++ +T + + + +SKPF + LV VN LL
Sbjct: 65 DVCREVRE-TSKVPIIMLTAKSDESDELTGFELGVDEYISKPFSPKILVARVNALLRR 121
>gi|197301269|ref|ZP_03166355.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
29176]
gi|197299658|gb|EDY34172.1| hypothetical protein RUMLAC_00001 [Ruminococcus lactaris ATCC
29176]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + GY V+ +G A D E+ SLL+ D++MP
Sbjct: 1 MDRAKILVVDDESRMRKLVRDFLVREGYNVLEAEDGVEAMDIFYEEKDISLLILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + ++ +T + + +SKPF + LV VN +L
Sbjct: 61 MDGWQVCREIRE-SSKVPIIMLTARSEERDELQGFDLGVDEYISKPFSPKILVARVNAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|189468013|ref|ZP_03016798.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
17393]
gi|189436277|gb|EDV05262.1| hypothetical protein BACINT_04407 [Bacteroides intestinalis DSM
17393]
Length = 1451
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R FL L Y+V+ NG ++ +E L+++DI+MP MDG+++
Sbjct: 1192 ILIVEDNMELRSFLHTILS-ENYKVIEAINGQEGLERAQEHVPDLIISDIMMPVMDGLDM 1250
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + ++ ++ +++ ++KPF L + LL +
Sbjct: 1251 VKNIKENREICHIPIILLSAKSSLDDRISGLEQGIDDYITKPFSATYLKARIKSLLHQR 1309
>gi|166033420|ref|ZP_02236249.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
27755]
gi|166026605|gb|EDR45362.1| hypothetical protein DORFOR_03146 [Dorea formicigenerans ATCC
27755]
Length = 228
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MD
Sbjct: 1 MILRLLIVEDEKQICDAIAKSLYDAGYEVDTCYDGEEALECILTENYDLVVLDLNLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + KV+ ++ +A + + KPFHL++L + L
Sbjct: 61 GMEILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|160936100|ref|ZP_02083473.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
BAA-613]
gi|158440910|gb|EDP18634.1| hypothetical protein CLOBOL_00996 [Clostridium bolteae ATCC
BAA-613]
Length = 238
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN +ILL EDD ++R + L GY V +G + E L + D++MP M
Sbjct: 3 MNGDRILLVEDDKEIREGVEIFLKSQGYAVFQAADGVEGLKVLEEREIDLAIVDVMMPRM 62
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E D V+F++ + ++KPF +L+ VN L
Sbjct: 63 DGITMTAKLREKY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELMARVNSQLR 121
Query: 120 IKN 122
+
Sbjct: 122 RYH 124
>gi|157151302|ref|YP_001449801.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
substr. CH1]
gi|157076096|gb|ABV10779.1| DNA-binding response regulator [Streptococcus gordonii str. Challis
substr. CH1]
Length = 228
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + R ++ AL GY+V S NG A + + +++++ DI+MP M G+E
Sbjct: 2 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T A V + L+KPF L++L+ + +
Sbjct: 62 ALKEIRATGNTTHVIMLTAMAEVDDRVNGLDAGADDYLTKPFSLKELLARLRSMARR 118
>gi|158319154|ref|YP_001511661.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158139353|gb|ABW17665.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 232
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++I L+ ED+ +R+FL L + G+EV+ +G A D + +++ D+++P
Sbjct: 1 MEERIKVLVVEDETSIRKFLAINLNRDGFEVIEAASGEEALDIITRTQPKVVVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ + + P++ ++ +T + + KPF+ +L+ + L
Sbjct: 61 IDGFEVCQNIRKSIPNIVIIMLTAKSQDMDKIMGLELGADDYMVKPFNPLELIARIRANL 120
Query: 119 T 119
Sbjct: 121 R 121
>gi|53713474|ref|YP_099466.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|60681720|ref|YP_211864.1| putative two component system response regulator [Bacteroides
fragilis NCTC 9343]
gi|253565462|ref|ZP_04842917.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|265763741|ref|ZP_06092309.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
gi|52216339|dbj|BAD48932.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|60493154|emb|CAH07935.1| putative two component system response regulator [Bacteroides
fragilis NCTC 9343]
gi|251945741|gb|EES86148.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|263256349|gb|EEZ27695.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
Length = 224
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V N+G + ++ +R+E F LL+ DI+MP+M+G+E
Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWELIRQEAFDLLILDIIMPKMNGLE 62
Query: 64 LARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L KPF ++L + +L
Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRR 120
>gi|324324610|gb|ADY19870.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 223
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVEILHDE-FEVDTALNGEEGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|283457730|ref|YP_003362317.1| response regulator [Rothia mucilaginosa DY-18]
gi|283133732|dbj|BAI64497.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Rothia mucilaginosa
DY-18]
Length = 233
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ +DDD + + L + G+ V C NGA A++ L+L D+++P M+GI
Sbjct: 7 HTILVVDDDDALAEMIGLVLAQEGFNAVFCENGARAFETFMRSTPDLVLLDLMLPGMNGI 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ ++ ++ ++ +T + ++KPF +L+ + L +
Sbjct: 67 EVCQQIR-RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPR 124
>gi|228941716|ref|ZP_04104263.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228974641|ref|ZP_04135207.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228981236|ref|ZP_04141536.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis Bt407]
gi|228778436|gb|EEM26703.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis Bt407]
gi|228785044|gb|EEM33057.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228817928|gb|EEM64006.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326942322|gb|AEA18218.1| two-component response regulator ycbL [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDLSIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|170755155|ref|YP_001781532.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169120367|gb|ACA44203.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 221
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRWNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|119484770|ref|ZP_01619252.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
gi|119457588|gb|EAW38712.1| adenylate/guanylate cyclase [Lyngbya sp. PCC 8106]
Length = 455
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ IL+ +D+ L + L GYE++ +G A + L+L D++MP
Sbjct: 1 MSDHLHQILIVDDEPANLILLEELLKSEGYEILLAASGIEALQLAKTTSPDLVLLDVMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG E+ E V+F+T ++KPF+ R L+ +V+
Sbjct: 61 EMDGFEVCDSLRKDEQLKVTPVIFLTSLDDEQSQIKGLELMGDDYITKPFNSRLLLAKVS 120
Query: 116 RLLTI 120
LL +
Sbjct: 121 SLLQL 125
>gi|70732213|ref|YP_261969.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
fluorescens Pf-5]
gi|68346512|gb|AAY94118.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
fluorescens Pf-5]
Length = 465
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ + L AL + G +V + NG A + +E L+++D MP MD
Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + P L V+ +T ++ V S ++KPF + +L V++ L
Sbjct: 61 GPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVSKALQF 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|89097745|ref|ZP_01170633.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
gi|89087604|gb|EAR66717.1| hypothetical protein B14911_15157 [Bacillus sp. NRRL B-14911]
Length = 233
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + L K GY ++G +D +E + L++ D ++P MDG+
Sbjct: 2 KILVVEDNESVCSMLEMFFMKEGYTGRFVHSGQEGFDAFNKESWDLVIVDWMLPVMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ EL + ++ +T + + ++KPF L+ + +
Sbjct: 62 LCRKIREL-STVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLALMARIKAVTRR 117
>gi|326332848|ref|ZP_08199106.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
Broad-1]
gi|325949406|gb|EGD41488.1| DNA-binding response regulator MtrA [Nocardioidaceae bacterium
Broad-1]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ ED+ + + + L GY+VV +G A E L++ D+++P DG
Sbjct: 4 TRRVLVVEDEPVINQAVSDRLTAEGYDVVRAWDGPGAVSCFEETSPDLVVLDVMLPGYDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + P + V+ +T A L+KPF R+LV VN LL
Sbjct: 64 LEVCRRIQAVRP-VPVLMLTARVDEADVLVGLGVGADDYLTKPFRARELVARVNALLRR 121
>gi|288918433|ref|ZP_06412785.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
gi|288350196|gb|EFC84421.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
Length = 227
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ L + L + G+ V +GA A + E + +++ D+++P +DG E
Sbjct: 2 RVLVVEDETRTAALLRRGLAEEGFAVDVVADGADAVWQATEITYDVIVLDLMLPSLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ ++ AV L KPF +L + L+
Sbjct: 62 VCRRLRAAGRWSPVLMLSARGAVTDRVRGLDVGADDYLPKPFSFDELSARIRALIRR 118
>gi|322418162|ref|YP_004197385.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320124549|gb|ADW12109.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 237
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +DD + L L GY V + ++GA DK ++ ++ D+++P ++
Sbjct: 1 MAKRILIIDDDTGLCELLGSYLASEGYLVDAVHDGAEGVDKAVSRDYAFVVLDVMLPTLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ RR + + V+ +T L KPF+ R+LV + +
Sbjct: 61 GFDVLRRIRQNT-QVPVLMLTARGDEIDRIVGLEMGADDYLPKPFNPRELVARLRA-IQR 118
Query: 121 KN 122
++
Sbjct: 119 RS 120
>gi|194290067|ref|YP_002005974.1| DNA-binding response regulator in two-component regulatory system
with phor [Cupriavidus taiwanensis LMG 19424]
gi|193223902|emb|CAQ69911.1| DNA-binding response regulator in two-component regulatory system
with PhoR [Cupriavidus taiwanensis LMG 19424]
Length = 235
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G A+ + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|49481373|ref|YP_038858.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49332929|gb|AAT63575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|42781127|ref|NP_978374.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42737048|gb|AAS40982.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P +DG +
Sbjct: 3 TILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 VCKAIREENKKIGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 119
>gi|150019834|ref|YP_001312088.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149906299|gb|ABR37132.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD D+ + + K+L G+ +S +G A ++E ++ DI+MP+MD
Sbjct: 1 MQKKILVIDDDKDIVKLITKSLSYEGFGTISAYSGKEALCVLKENNIDFIILDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+++ R + + ++F++ ++KPF +++L + +
Sbjct: 61 GLDVCRSIRKSY-NAPILFLSARDKDIDKIVGLEIGADDYMTKPFSIQELNSRIRA 115
>gi|75763996|ref|ZP_00743615.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74488517|gb|EAO52114.1| Transcriptional regulatory protein resD [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 156
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D +RR L L + Y + +NG +A + + + L+L D++MP DGIE
Sbjct: 6 RILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALEMALQNDYDLILLDLMMPGKDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ +T + KPF R++V V +L
Sbjct: 66 VCKGVREK-KATPIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPREVVLRVKAVLRR 121
>gi|332291060|ref|YP_004429669.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
gi|332169146|gb|AEE18401.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
Length = 236
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y V NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYNVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + D+ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEDIPIIFLTAKALKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|332519639|ref|ZP_08396103.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
gi|332044198|gb|EGI80392.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
Length = 234
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L L YEVV NG ++K +++ F L + D++MP DG
Sbjct: 6 KKILLVEDDPNFGTVLRDYLMMNDYEVVHAKNGMEGFEKFKKDDFDLCILDVMMPYKDGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + D+ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 66 TLAKEIREKNADVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124
>gi|317063635|ref|ZP_07928120.1| two-component response regulator [Fusobacterium ulcerans ATCC
49185]
gi|313689311|gb|EFS26146.1| two-component response regulator [Fusobacterium ulcerans ATCC
49185]
Length = 233
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +RR+L L Y V + +G +K + + L+L D++MP++ G
Sbjct: 7 KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGE 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + ++ ++ +T + + L+KPF + +L + L K+
Sbjct: 67 EVCKIIRK-TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKS 125
>gi|307324828|ref|ZP_07604034.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306889710|gb|EFN20690.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +R L + L + G+ + + +G S R ++ ++ D+++P G +
Sbjct: 2 RILVVEDDARLRELLTEGLEQEGFTIETAADGLSGLALARSGGYAAIVLDVMLPGCSGYQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ +T D L+KPF L+ V L+
Sbjct: 62 LCSRLREKGDWTPILMLTAKDGEYDEADGLDVGADDYLTKPFSFVVLIARVRALVRR 118
>gi|300863635|ref|ZP_07108575.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
gi|300338377|emb|CBN53719.1| Adenylate/Guanylate Cyclase [Oscillatoria sp. PCC 6506]
Length = 945
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D+R ++ + L +A + VV NGA + + + +++TD++MP + G++
Sbjct: 594 TVLVVDDNPDLRTYVARILRQANFSVVLARNGAEGLEMAKSDDPDVIVTDLMMPVVSGLD 653
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D V+ +T A + LSKPF+ R+L+ EV L+ +K
Sbjct: 654 LIRMIREDDVLKGTPVILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLVALK 713
>gi|229074576|ref|ZP_04207601.1| Two-component response regulator [Bacillus cereus Rock4-18]
gi|228708534|gb|EEL60682.1| Two-component response regulator [Bacillus cereus Rock4-18]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V C +G A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|149277746|ref|ZP_01883886.1| two-component response regulator [Pedobacter sp. BAL39]
gi|149231434|gb|EDM36813.1| two-component response regulator [Pedobacter sp. BAL39]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L K GY+V NNG ++ L++ DI+MP+MDG
Sbjct: 5 KQKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEGITVAKKVHPDLIILDIMMPKMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + + ++F+T + ++KP R LV+ +N +L
Sbjct: 65 IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|150021704|ref|YP_001307058.1| two component transcriptional regulator [Thermosipho melanesiensis
BI429]
gi|149794225|gb|ABR31673.1| two component transcriptional regulator, winged helix family
[Thermosipho melanesiensis BI429]
Length = 239
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KI++ +D ++ + L K GY+V+ + A ++++++ + L DI++P +DG
Sbjct: 3 KRKIMVIDDQPEILELISFTLEKEGYDVIPVEDAEKALEELKDKDVDMFLVDIMLPGIDG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R L+ V+F++ ++KPF +R+L+ + +
Sbjct: 63 FEFVRHIRSLEQHKLTPVIFLSAKGEEFDKVLGLELGADDYITKPFSIRELLARIKAVFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|30260446|ref|NP_842823.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47525530|ref|YP_016879.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183288|ref|YP_026540.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|52144971|ref|YP_081859.1| response regulator [Bacillus cereus E33L]
gi|118476026|ref|YP_893177.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|165873352|ref|ZP_02217952.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167634226|ref|ZP_02392548.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640090|ref|ZP_02398357.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170687705|ref|ZP_02878920.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170709229|ref|ZP_02899651.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177655756|ref|ZP_02937031.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190567377|ref|ZP_03020291.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196041101|ref|ZP_03108397.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196046240|ref|ZP_03113467.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|227812937|ref|YP_002812946.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228925516|ref|ZP_04088608.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228931762|ref|ZP_04094662.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944068|ref|ZP_04106450.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229119926|ref|ZP_04249183.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|229182659|ref|ZP_04309903.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|229600613|ref|YP_002864895.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254686665|ref|ZP_05150523.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254724733|ref|ZP_05186516.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254735437|ref|ZP_05193145.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254744181|ref|ZP_05201863.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254756033|ref|ZP_05208064.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254761683|ref|ZP_05213701.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30253767|gb|AAP24309.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47500678|gb|AAT29354.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177215|gb|AAT52591.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|51978440|gb|AAU19990.1| response regulator [Bacillus cereus E33L]
gi|118415251|gb|ABK83670.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|164710909|gb|EDR16486.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511901|gb|EDR87280.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530540|gb|EDR93255.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170125862|gb|EDS94767.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170668232|gb|EDT18980.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172079985|gb|EDT65087.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190561504|gb|EDV15475.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196022985|gb|EDX61665.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196028036|gb|EDX66647.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|227003315|gb|ACP13058.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228600828|gb|EEK58404.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228663540|gb|EEL19123.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228815618|gb|EEM61857.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827911|gb|EEM73645.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228834154|gb|EEM79699.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229265021|gb|ACQ46658.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 233
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKIREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|307332098|ref|ZP_07611186.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306882240|gb|EFN13338.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 246
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G++V + +G +A D LL+ D+++P DG+
Sbjct: 20 RRVLVVEDDPTIVDAIAARLRAEGFQVQTAGDGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQARRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|302559955|ref|ZP_07312297.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
Tu4000]
gi|302477573|gb|EFL40666.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
Tu4000]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|302552346|ref|ZP_07304688.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302469964|gb|EFL33057.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|226354970|ref|YP_002784710.1| response regulator CheY [Deinococcus deserti VCD115]
gi|226316960|gb|ACO44956.1| putative response regulator, cheY [Deinococcus deserti VCD115]
Length = 234
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ ED+ D+ RF+ L GY +G + K RE L++ D+++P
Sbjct: 10 MERKPLVLVIEDEKDIARFIELELAAEGYATEVAFDGVTGLSKFREVNPDLVILDLMLPV 69
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ARR + + ++ +T + + L KPF + +L+ V L
Sbjct: 70 LDGLEVARRIRK-TSNTPIIILTAKDGIQDKVEGLDSGADDYLIKPFSIEELLARVRAHL 128
Query: 119 TIKN 122
N
Sbjct: 129 RRVN 132
>gi|196041400|ref|ZP_03108693.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196027648|gb|EDX66262.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|218231947|ref|YP_002367927.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218159904|gb|ACK59896.1| DNA-binding response regulator [Bacillus cereus B4264]
Length = 224
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|167769243|ref|ZP_02441296.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
17241]
gi|167668883|gb|EDS13013.1| hypothetical protein ANACOL_00566 [Anaerotruncus colihominis DSM
17241]
Length = 224
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59
M+ KIL+AED++ +RR + L + G++VV +G A +K + E L++ D++MP+
Sbjct: 1 MDNKILVAEDEEKIRRLVSSYLVREGFKVVEAADGQQAVEKFEDNEDVVLVMLDVMMPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R ++ ++ +T + + ++KPF LV V LL
Sbjct: 61 DGYDACREIRGK-SNVPILMLTARDSEQDEVAGFGAGADEYIAKPFSPTILVTRVKNLLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|167636524|ref|ZP_02394820.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170689415|ref|ZP_02880607.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|254686315|ref|ZP_05150174.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254724311|ref|ZP_05186095.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254744396|ref|ZP_05202076.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|167528056|gb|EDR90856.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170666642|gb|EDT17413.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
Length = 223
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|153872867|ref|ZP_02001635.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152070667|gb|EDN68365.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 379
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D L+ L KAG++V+ +G SA K L+L D++MP + G
Sbjct: 9 KTLLIVDDIPANVSLLLDFLTKAGFKVLVAKDGESALKKTEYAHPDLILLDVMMPGLSGF 68
Query: 63 ELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E ++ ++F+T + + ++KP +++ V L +
Sbjct: 69 EVCKILKSKEETKNIPIIFMTALSETVDKVKGFSLGAVDYITKPIQHEEVLARVTTHLKL 128
Query: 121 K 121
+
Sbjct: 129 R 129
>gi|118478501|ref|YP_895652.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118417726|gb|ABK86145.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 236
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|71737625|ref|YP_276201.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558178|gb|AAZ37389.1| DNA-binding response regulator ColR [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 227
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ + LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|16124549|ref|NP_419113.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
CB15]
gi|221233235|ref|YP_002515671.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
NA1000]
gi|13421435|gb|AAK22281.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
CB15]
gi|220962407|gb|ACL93763.1| phosphate regulon response regulator PhoB [Caulobacter crescentus
NA1000]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+D + L L K GY V +G A E L++ D ++P++
Sbjct: 1 MTPYVLVVEDEDALATLLHYNLDKEGYRVGVAGDGEEALIMANERAPDLVILDWMLPKVS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR ++ ++ +T + KPF + +L V +L
Sbjct: 61 GIEVCRRLRGRAETRNVPIIMLTARGEETDRIRGLDTGADDYVVKPFSMVELTARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|22538256|ref|NP_689107.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|25012116|ref|NP_736511.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
gi|76798542|ref|ZP_00780775.1| Two-component response regulator czcR [Streptococcus agalactiae
18RS21]
gi|77413189|ref|ZP_00789387.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|22535169|gb|AAN00980.1|AE014287_20 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|24413660|emb|CAD47740.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586106|gb|EAO62631.1| Two-component response regulator czcR [Streptococcus agalactiae
18RS21]
gi|77160729|gb|EAO71842.1| DNA-binding response regulator [Streptococcus agalactiae 515]
Length = 223
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ R ++K L K Y V S +NG A V + +++ D++MP+MDG
Sbjct: 2 KILVVEDEFDLNRSIVKLLKKQHYSVDSASNGEEALQFVSVAEYDVIILDVMMPKMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T AV L KPF +L+ + +L N
Sbjct: 62 FLKLLRNKGSQVSILMLTARDAVEDRIAGLDFGADDYLVKPFEFGELMARIRAMLRRAN 120
>gi|331003642|ref|ZP_08327137.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412269|gb|EGG91662.1| hypothetical protein HMPREF0491_01999 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ + L + + GY + +G + R F +L+ D+++P+++
Sbjct: 1 MN--ILVVEDEVLLASSLKEIFEECGYSTICAYDGMEGLELARFSHFDILVLDLMLPKLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++AR + L ++ +T + + + L+KPF R+L+ VN LL
Sbjct: 59 GFQVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|325660808|ref|ZP_08149436.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472882|gb|EGC76092.1| hypothetical protein HMPREF0490_00168 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 234
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ EDD ++R + L GY V NG + E L + DI+MP MD
Sbjct: 1 MKNQIVIVEDDKEIREGVEIYLRSQGYTVFQAENGKEGLAIIEREKIDLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + R E + V+ ++ + ++KPF +L+ VN L
Sbjct: 61 GITMTMRLREKY-EFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|325298170|ref|YP_004258087.1| two component transcriptional regulator, winged helix family
[Bacteroides salanitronis DSM 18170]
gi|324317723|gb|ADY35614.1| two component transcriptional regulator, winged helix family
[Bacteroides salanitronis DSM 18170]
Length = 236
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M + +LL ED++ + + L G+ + NG +K + +++ D++
Sbjct: 1 MKNREAIIDVLLVEDEETLALIIKDTLEGQGFAIRLAENGEEGIEKFFGQKPDVVVADVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MP MDG E+ RR D V+F+T +A + + L KPF +++L+ +
Sbjct: 61 MPRMDGFEMVRRIRRKDKQTPVLFLTARSATSDVVEGFELGGNDYLKKPFGMQELIVRIK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLGR 125
>gi|326790774|ref|YP_004308595.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326541538|gb|ADZ83397.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ +R + K G+EV +G A +K + F L++ D++MPE+DG
Sbjct: 3 KLLVVDDEKMIRELIKKYATFEGHEVTEAEDGMEAIEKCKMNQFDLIIMDVMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D V+ ++ + KPF ++L+ VN ++
Sbjct: 63 ACREIRKFT-DTPVLMLSARGEEYDRIHGFEIGVDDYVVKPFSPKELMMRVNAIIKR 118
>gi|288920186|ref|ZP_06414502.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
gi|288348436|gb|EFC82697.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G+EV +G SA + L+L D+++P +
Sbjct: 1 MT-RLLVVEDEESFSDALSFMLEREGFEVAVVGDGPSALAEFDRRGADLILLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRTLRAR-STVPVIMLTARDSEIDKVVGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|262277654|ref|ZP_06055447.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
proteobacterium HIMB114]
gi|262224757|gb|EEY75216.1| phosphate regulon transcriptional regulatory protein PhoB [alpha
proteobacterium HIMB114]
Length = 226
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+ L ED+ + + L K G++ +NG A +++E+ L+L D ++P++
Sbjct: 1 MDAKVFLVEDEQSIITLVEYNLKKEGFKFSVSSNGEEALHEIKEQEPDLVLLDWMLPDLS 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ R + DL ++ +T + ++KPF +LV +N LL
Sbjct: 61 GIDICRSLKKDKKFQDLPIIMLTAKGQEEDKVAALNAGADDYITKPFGHAELVARINALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|255035394|ref|YP_003086015.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254948150|gb|ACT92850.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1366
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+AED+ ++R ++ L Y V+ +G A R+ +L+++D++MP MDG+
Sbjct: 1113 ETVLIAEDNAELRDYMASLLENQ-YTVLKAADGQEALSWARKVLPNLIISDLMMPRMDGM 1171
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL E + V+ +T + D L+KPF + +L V L+ +
Sbjct: 1172 ELTVSIKSDERTSHIPVILLTAKSGQESRIDGLKTGADDYLTKPFSVEELTVRVANLIEL 1231
Query: 121 K 121
+
Sbjct: 1232 R 1232
>gi|166710916|ref|ZP_02242123.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHACDAREAQTAIADRLPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|153941052|ref|YP_001391293.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152936948|gb|ABS42446.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295319325|gb|ADF99702.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 221
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|118479940|ref|YP_897091.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196043892|ref|ZP_03111129.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225866817|ref|YP_002752195.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228948563|ref|ZP_04110842.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229187082|ref|ZP_04314231.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|118419165|gb|ABK87584.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|196025228|gb|EDX63898.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225790943|gb|ACO31160.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|228596391|gb|EEK54062.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228811062|gb|EEM57404.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|94967540|ref|YP_589588.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94549590|gb|ABF39514.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 232
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ + R L L GYE+ N+G +A++ +++ L++TDI MP MD
Sbjct: 1 MIARILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + + ++ ++ + ++KPF++ +L+ + L
Sbjct: 61 GLALCKELRAR-SQVPIIVLSVKEDERTKVKALDLGADDYITKPFNINELLARIRANLRR 119
>gi|332706802|ref|ZP_08426863.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
gi|332354686|gb|EGJ34165.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L + L Y V ++G + V + L+L D+++P+MDGI
Sbjct: 2 RILLVEDDQRITDALAEDLTDQHYVVDVAHDGQIGKELVESFSYDLILLDVMLPKMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ ++ +T ++ L KPF L +L + LL N
Sbjct: 62 LCRKLRSQGDLTPILMLTARDTISDKIVGLDAGADDYLVKPFDLGELSARIRALLRRGN 120
>gi|324328720|gb|ADY23980.1| Two-component response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 229
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|282865224|ref|ZP_06274277.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282560147|gb|EFB65696.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 225
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A R+ L+L D+++P D
Sbjct: 1 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDAKPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 61 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 119
>gi|228987786|ref|ZP_04147896.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228771944|gb|EEM20400.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|188584441|ref|YP_001927886.1| transcriptional regulator [Methylobacterium populi BJ001]
gi|179347939|gb|ACB83351.1| two component transcriptional regulator, winged helix family
[Methylobacterium populi BJ001]
Length = 234
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ ED++ + L L G+ V G A ++ E L+L D ++P + G
Sbjct: 3 SARILIVEDEESLTTLLRYNLEAEGFLVDVAIRGEEADLRLHETTPDLVLLDWMVPGLSG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL RR L V+ +T A + + KPF + +L+ V LL
Sbjct: 63 IELCRRIRARRETERLPVIMLTARGEEADRVRGLSTGADDYVVKPFSVPELLARVRALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|169632456|ref|YP_001706192.1| OmpR family transcriptional regulator [Acinetobacter baumannii SDF]
gi|169151248|emb|CAO99934.1| transcriptional regulator protein (OmpR family),response regulator
in two-component regulatory system with BaeS, regulates
RNA synthesis [Acinetobacter baumannii]
Length = 228
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I+L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHIMLVEDEVELAHLVCDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|170755180|ref|YP_001780249.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169120392|gb|ACA44228.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 230
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V + G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKASCGEEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA E + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119
>gi|114566853|ref|YP_754007.1| signal transduction histidine kinase-like protein [Syntrophomonas
wolfei subsp. wolfei str. Goettingen]
gi|114337788|gb|ABI68636.1| PAS/PAC sensor hybrid histidine kinase [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 763
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++ + L L G++V NG A + + + + L+ DI+MP MDG+E
Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNYDLVFMDILMPVMDGLET 594
Query: 65 ARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR E + + ++ IT A A L+KP + +L +++++
Sbjct: 595 TRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQMEELNQAISKIIK 653
>gi|328913554|gb|AEB65150.1| Uncharacterized transcriptional regulatory protein [Bacillus
amyloliquefaciens LL3]
Length = 250
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + + ++G++V +G +A + L++ D++MP+MDG E+
Sbjct: 29 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 88
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T L KPF +L V LL
Sbjct: 89 SEAVRSFT-DIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 143
>gi|160933446|ref|ZP_02080834.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
gi|156867323|gb|EDO60695.1| hypothetical protein CLOLEP_02292 [Clostridium leptum DSM 753]
Length = 234
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED++ ++ + L GY VV ++G +K RE L+L D+++P+M+
Sbjct: 11 MAKTILIIEDEEAIQGVVKAFLEDEGYNVVLASDGLEGMEKFREYHPDLILLDLMLPKMN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T A ++KPF + +V + +L
Sbjct: 71 GFSVCEAIRKE-SQVPIIMLTALDDDASQMKGFDALADDYITKPFSMPLVVKHIEAVLRR 129
>gi|119899035|ref|YP_934248.1| DNA-binding response regulator [Azoarcus sp. BH72]
gi|119671448|emb|CAL95361.1| probable DNA-binding response regulator [Azoarcus sp. BH72]
Length = 252
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R L L K G + +G + L++ D+++P DG+
Sbjct: 7 HILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLT 66
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T L KPF R+L V +L
Sbjct: 67 LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRR 125
>gi|86148149|ref|ZP_01066448.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
MED222]
gi|218710466|ref|YP_002418087.1| sensory box sensor histidine kinase/response regulator [Vibrio
splendidus LGP32]
gi|85834066|gb|EAQ52225.1| Sensory box sensor histidine kinase/response regulator [Vibrio sp.
MED222]
gi|218323485|emb|CAV19662.1| hypothetical sensory box sensor histidine kinase/response regulator
[Vibrio splendidus LGP32]
Length = 1129
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + +G + + +E LLL DI+MP M G ++
Sbjct: 727 IADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786
Query: 67 RATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L ++ +T LSKPF+ ++L + L+
Sbjct: 787 ALRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLS 841
>gi|332829408|gb|EGK02062.1| hypothetical protein HMPREF9455_00184 [Dysgonomonas gadei ATCC
BAA-286]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL ED+ + + AL K + V NG + + +++ DI+MP++D
Sbjct: 1 MKIKVLLVEDEPALAMIIKDALEKREFTVDCAANGNEGLEMFHKLHPDIIVADIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + D + ++F++ + L KPF + +L+ + LL
Sbjct: 61 GFSMTQLIRQTDKHIPILFLSAKSKTDDVVQGFEIGGNDYLKKPFGMEELIVRIKSLLNR 120
>gi|261867362|ref|YP_003255284.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
gi|293390893|ref|ZP_06635227.1| transcriptional regulatory protein CpxR [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261412694|gb|ACX82065.1| CpxR [Aggregatibacter actinomycetemcomitans D11S-1]
gi|290951427|gb|EFE01546.1| transcriptional regulatory protein CpxR [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 231
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L + L G++V NNG A + + + + L+L DI+MP ++GIE
Sbjct: 3 KILLVDDDAELTELLAQLLDLEGFQVNVANNGKEALELL-DHSYDLILLDIMMPVLNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + VM +T L KPF+ R+LV + +L
Sbjct: 62 TLKQIRKNYS-TPVMMLTARGDDIDRILGLELGADDYLPKPFNDRELVARIKAILRR 117
>gi|257469388|ref|ZP_05633481.1| two-component response regulator [Fusobacterium ulcerans ATCC
49185]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +RR+L L Y V + +G +K + + L+L D++MP++ G
Sbjct: 2 KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGVEKFKSNFYDLILLDLMMPKLSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + ++ ++ +T + + L+KPF + +L + L K+
Sbjct: 62 EVCKIIRK-TSNIPIIVLTAKDQILNKVELLDMGADDYLTKPFEIEELFARIRVALRNKS 120
>gi|304317628|ref|YP_003852773.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779130|gb|ADL69689.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ + + L +L + GY V +G +K++ F L++ D+++P++DG+ L
Sbjct: 4 ILIIDDEEMLVKGLRLSLIQEGYSVDYAYDGEEGLEKIKSGNFDLVILDLMLPKIDGLTL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T L+KPF+ R+L+ + L
Sbjct: 64 CKEVRS-FSNIPIIMLTAKGEDVDKIVGIEMGADDYLAKPFNTRELIARIRALFRR 118
>gi|291287945|ref|YP_003504761.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
gi|290885105|gb|ADD68805.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
Length = 224
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ ED++ + L L +AG+E G A + V + ++ DI++PE+D
Sbjct: 1 MNKRILIIEDEEQIALLLKDYLSQAGFEAHMHGTGKGALETVEKISPDAVILDIMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + L ++ +T + KPF R++V + +L
Sbjct: 61 GLDICRGIRKK-SALPIIMLTAKVEEIDRLIGLELGADDYICKPFSPREVVARLKAVLRR 119
>gi|184159450|ref|YP_001847789.1| response regulator [Acinetobacter baumannii ACICU]
gi|239501705|ref|ZP_04661015.1| response regulator [Acinetobacter baumannii AB900]
gi|260557142|ref|ZP_05829358.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|332876292|ref|ZP_08444067.1| response regulator receiver domain protein [Acinetobacter baumannii
6014059]
gi|183211044|gb|ACC58442.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Acinetobacter baumannii
ACICU]
gi|193078315|gb|ABO13289.2| transcriptional regulator protein (OmpR family) [Acinetobacter
baumannii ATCC 17978]
gi|260409248|gb|EEX02550.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|322509364|gb|ADX04818.1| baeR [Acinetobacter baumannii 1656-2]
gi|323519388|gb|ADX93769.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
gi|332735564|gb|EGJ66616.1| response regulator receiver domain protein [Acinetobacter baumannii
6014059]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I+L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|167750447|ref|ZP_02422574.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
gi|167656598|gb|EDS00728.1| hypothetical protein EUBSIR_01423 [Eubacterium siraeum DSM 15702]
Length = 255
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ +R + + G+ V +G A D +E+ F +++ D++MP +DG
Sbjct: 35 KILVADDEQKIREVIKEYAEYEGHTVYEAVDGMQAVDMAKEQDFDIIIMDVMMPRLDGFS 94
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ ++ + KPF ++++ +N ++
Sbjct: 95 ACKEIRK-FKNTPILMLSARTEEYDKLFGFEMGVDDYVVKPFSPKEVLARINAIIKR 150
>gi|75908368|ref|YP_322664.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75702093|gb|ABA21769.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 407
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L L +AG+ V NG SA KV+E +L+L D++MP MDG E
Sbjct: 9 VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R D+ V+F+T + ++KP +++ +N L ++
Sbjct: 69 CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLELR 127
>gi|116622737|ref|YP_824893.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116225899|gb|ABJ84608.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 250
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD ++ + + G++V + ++G + + E F L++ D+++P +DG E+
Sbjct: 27 ILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGFEV 86
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ +T + + L KPF +L+ + +L
Sbjct: 87 LRQLRKR-SATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRR 141
>gi|117925190|ref|YP_865807.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
gi|117608946|gb|ABK44401.1| two component transcriptional regulator, winged helix family
[Magnetococcus sp. MC-1]
Length = 235
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M+++IL+ ED+ D+ R L +AG++ V+ NG A V ++P L++ D+++P +
Sbjct: 1 MSERILIVEDETDLLRTLEYNFTQAGFDTVTTTNGREAIRLVSQKPEPDLVVLDLMLPGI 60
Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G ++ + + + + ++ +T ++KPF +R+L+ V L
Sbjct: 61 SGYDVCKTLRDRESTRKIPIIMLTARGESLDQEMGFDAGADDYVTKPFSMRELLLRVKAL 120
Query: 118 LTI 120
+
Sbjct: 121 MRR 123
>gi|229083816|ref|ZP_04216127.1| Two-component response regulator [Bacillus cereus Rock3-44]
gi|228699473|gb|EEL52147.1| Two-component response regulator [Bacillus cereus Rock3-44]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGIEALELIQQKNFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L ++ ++ +T ++KPF + L+ + +L
Sbjct: 63 TCYQIRQLC-NVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEQVLIARIEAVLRR 118
>gi|229132845|ref|ZP_04261690.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
gi|228650672|gb|EEL06662.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST196]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ +R F++ L AG+ V+ + G A + E + L D+++P +D
Sbjct: 4 MS-TILVLEDEIPIRSFIVLNLKHAGFYVLEASTGEEALQILSEHIVDVALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKAIREENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|167758878|ref|ZP_02431005.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
gi|167663618|gb|EDS07748.1| hypothetical protein CLOSCI_01223 [Clostridium scindens ATCC 35704]
Length = 235
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GY+V +G + +E L + D++MP MD
Sbjct: 3 MN-HVLIVEDDKEIREGVEIYLKSQGYQVFQAADGVEGLKIIEKEEIHLAIVDVMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + E D V+F++ + ++KPF +L+ VN L
Sbjct: 62 GIQMTIKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 120
>gi|30020111|ref|NP_831742.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus ATCC 14579]
gi|296502594|ref|YP_003664294.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis BMB171]
gi|29895661|gb|AAP08943.1| Alkaline phosphatase synthesis two-component response regulator
phoP [Bacillus cereus ATCC 14579]
gi|296323646|gb|ADH06574.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis BMB171]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 1 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 60 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRR 119
>gi|118577295|ref|YP_899535.1| two component transcriptional regulator [Pelobacter propionicus DSM
2379]
gi|118504800|gb|ABL01282.1| two component transcriptional regulator, winged helix family
[Pelobacter propionicus DSM 2379]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD + +I L +AG++V+ G A + E +L++ D+++P++
Sbjct: 1 MTSTILLVEDDARIAEVVIAYLERAGFKVLHTLTGREAMTLISTEQPALVVLDLMLPDLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R E D+ V+ +T ++ A + KPF R+LV V +L
Sbjct: 61 GESICRELKE--CDIPVIILTAKSSEEERLAGFALGADDYIVKPFSPRELVARVQAVLKR 118
>gi|332652704|ref|ZP_08418449.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
gi|332517850|gb|EGJ47453.1| regulatory protein VanR [Ruminococcaceae bacterium D16]
Length = 238
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I++ +D+ + + L GY V A + V ++ L + D+++P+MD
Sbjct: 7 MSAEIMIVDDEAAIADLVDVYLKNEGYTVHKFYTATQALECVEQKRLDLAILDVMLPDMD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E ++ +T ++KPF+ +LV V L
Sbjct: 67 GFTLCQKIRESHL-FPILMLTAKVEDMDKITGLTLGADDYITKPFNPLELVARVKTQLRR 125
>gi|313672108|ref|YP_004050219.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
gi|312938864|gb|ADR18056.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
Length = 222
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + K + G+ V +G + + ++ DI++P +DG+
Sbjct: 2 RILIVEDEKTLANLIKKGFEEEGFAVDIAYDGEDGLFFAQNYSYDCIVLDIMLPVIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + + V+ +T V + L+KPF +L++ ++ K
Sbjct: 62 ILKKLRKQNNTTPVIMLTAKDTVKDKVLGLDSGSDDYLTKPFSFEELLSRTKAVIRRK 119
>gi|311067831|ref|YP_003972754.1| two-component response regulator YkoH [Bacillus atrophaeus 1942]
gi|310868348|gb|ADP31823.1| two-component response regulator (YkoH) [Bacillus atrophaeus 1942]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ ED++ + R L L GY+ G EE F+L+L D+++P +
Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYKATIKETGTEGLHAALEEKFALVLLDVMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + D V+ +T ++ ++KPF + +L+ + L
Sbjct: 61 SGLEVLRRLRKTDMHTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR 120
>gi|325680084|ref|ZP_08159651.1| putative subtilin biosynthesis regulatory protein SpaR
[Ruminococcus albus 8]
gi|324108247|gb|EGC02496.1| putative subtilin biosynthesis regulatory protein SpaR
[Ruminococcus albus 8]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ D+ + GY V + NG+ A + + ++L DI MPE DGIE
Sbjct: 3 KILIADDEPDVVSLVKDYFELNGYLVFTAKNGSEAIKQASRQ-PDIILLDINMPEADGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + P ++F+T + A + KPF L +L + + +N
Sbjct: 62 VCRRIRDYVP-CPIVFLTARIEDSDKVSGFAAGGDDYIIKPFSLEELGARIAAHIRREN 119
>gi|71908789|ref|YP_286376.1| DNA-binding response regulator CreB [Dechloromonas aromatica RCB]
gi|71848410|gb|AAZ47906.1| two component transcriptional regulator, winged helix family
[Dechloromonas aromatica RCB]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L AL G+ SC GA A + L++ D+ +P+M G +
Sbjct: 2 KILIVDDEPAISETLAYALRSDGFTTESCTLGAQALTLLAAGGHDLVVLDVGLPDMSGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T + ++KPF R++V+ + +L
Sbjct: 62 VCRALR-RYSDVPVLFLTARSDEVDRIVGLELGGDDYVAKPFSPREVVSRIRAILRR 117
>gi|330811310|ref|YP_004355772.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379418|gb|AEA70768.1| Putative response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L+ L + G++V +C++G SA + E + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLVSWLSQEGFQVRACHDGQSARKALAETAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ P+L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSDHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|298491318|ref|YP_003721495.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298233236|gb|ADI64372.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 236
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILL +D+ ++ L + L + GY V + +G + + + LL+ D ++P G
Sbjct: 6 SMRILLVDDEAELTDPLSRVLIREGYIVDAAYHGINGSQLAQIGTYDLLILDWMLPGKTG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ + V+F+T + L KPF LR+L+ V LL
Sbjct: 66 LEICQELRRQAKTTPVLFLTAKDTLDDRVQGLDAGADDYLIKPFELRELLARVRALLRR 124
>gi|262198125|ref|YP_003269334.1| response regulator receiver protein [Haliangium ochraceum DSM
14365]
gi|262081472|gb|ACY17441.1| response regulator receiver protein [Haliangium ochraceum DSM
14365]
Length = 317
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+A+DD + R + L K GYEV + +G AY++ P LL+TD++MP +D
Sbjct: 8 MPPRILVADDDAWILRMVTTVLKKRGYEVDTAPDGEQAYERALSNPPDLLITDVMMPNVD 67
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G L ++ E D+ V+F+T +A L KPF +L V R L
Sbjct: 68 GWTLVKQMREHPSLCDVPVIFLTALSADDDRIHGFRLGADDYLPKPFRFEELDLRVARTL 127
Query: 119 TI-KN 122
+N
Sbjct: 128 RRTRN 132
>gi|227824929|ref|ZP_03989761.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
gi|226905428|gb|EEH91346.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
Length = 234
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD+ + L+ + V +G A +++E+ +++ DI+MP +DG E+
Sbjct: 6 ILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGFEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RRA + D+ ++F++ A + KPFH+R+L+ V L +
Sbjct: 66 CRRARQFT-DIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRR 121
>gi|225018521|ref|ZP_03707713.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
DSM 5476]
gi|224948722|gb|EEG29931.1| hypothetical protein CLOSTMETH_02468 [Clostridium methylpentosum
DSM 5476]
Length = 244
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +R + L GY VV +G A DK + FSL+L DI+MP+ DG+E
Sbjct: 25 KILIAEDEAKLRYVVSGYLKSEGYHVVEAEDGEDALDKFYSDNFSLVLLDIMMPKRDGLE 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L D+ ++ +T + + +SKPF + LV V +L
Sbjct: 85 VCAEIRKL-SDVPIIMLTARNTEFDELNGFQHGADEYISKPFSPKILVTRVKSILKR 140
>gi|203288189|ref|YP_002223204.1| response regulatory protein [Borrelia recurrentis A1]
gi|201085409|gb|ACH94983.1| response regulatory protein [Borrelia recurrentis A1]
Length = 451
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++
Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIQNEKIDAIISDLRMPQIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + + ++ + +T V D+ L+KP L L+ + R L
Sbjct: 60 GEELLKIVKDRNLNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALKK 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|254412597|ref|ZP_05026370.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Microcoleus chthonoplastes PCC 7420]
gi|196180332|gb|EDX75323.1| ATPase, histidine kinase-, DNA gyrase B-, and HSP90-like domain
protein [Microcoleus chthonoplastes PCC 7420]
Length = 1116
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
IL+ +D+ + ++ L Y + ++ A + +R L+L DI+MP+M G
Sbjct: 711 HILIVDDEPTNLQVIVNHLSLQNYAITQASSALEALELIRLGFKPDLILLDIMMPQMTGY 770
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ E +L ++ +T ++ + A L+KP +L+ + L +
Sbjct: 771 ELCKKLREQFLPNELPIVLLTAKNQISDLVEGFAVGANDYLTKPVLKNELLARIKTHLRL 830
>gi|159898879|ref|YP_001545126.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891918|gb|ABX04998.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 231
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D+ +R L L G+ V NG R+ L+L DI+MPE+
Sbjct: 1 MAQTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ R + + ++ +T ++KPF+ R+++ V +L
Sbjct: 61 GLDFMRAWNKE-AETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRR 119
>gi|17231412|ref|NP_487960.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17133054|dbj|BAB75619.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 414
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +D R LG GY V+ ++GA+A V ++ L+L D++MPEMDG
Sbjct: 93 SPKVLVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + E + V+FIT LSKPF +LV V L+
Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQ 212
Query: 120 IK 121
K
Sbjct: 213 QK 214
>gi|241763956|ref|ZP_04761998.1| two component transcriptional regulator PhoB, winged helix family
[Acidovorax delafieldii 2AN]
gi|241366779|gb|EER61220.1| two component transcriptional regulator PhoB, winged helix family
[Acidovorax delafieldii 2AN]
Length = 235
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ + +G SA ++ ++L D ++P
Sbjct: 1 MKKLPRVLIVEDEPAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+ LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLMLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|311739315|ref|ZP_07713151.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305613|gb|EFQ81680.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length = 268
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|150025871|ref|YP_001296697.1| two-component system response regulatory protein RprY
[Flavobacterium psychrophilum JIP02/86]
gi|149772412|emb|CAL43892.1| Two-component system response regulatory protein RprY
[Flavobacterium psychrophilum JIP02/86]
Length = 233
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L +EV NG ++K +++ + L + D++MP DG
Sbjct: 4 NKKILLVEDDPNFGSILRDYLSMNDFEVTLAKNGMEGFEKFKKDNYDLCILDVMMPYKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T + L+KPF L+ ++ ++ K
Sbjct: 64 YTLAKEIREKNKEVPIVFLTAKSMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 123
>gi|146302697|ref|YP_001197288.1| two component transcriptional regulator [Flavobacterium johnsoniae
UW101]
gi|146157115|gb|ABQ07969.1| two component transcriptional regulator, winged helix family
[Flavobacterium johnsoniae UW101]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL EDD+ + L + YEV+ C NG S + + E F + + DI+MP+MDG E
Sbjct: 5 KILYTEDDETLAFLTKDNLEQNNYEVIHCTNGKSGLETFKNEDFDICIFDIMMPKMDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA ++D D+ ++F++ L KPF + +L+ ++ L
Sbjct: 65 LAEEVRKIDNDVPIIFLSAKTLKEDRIKGLRLGADDYLVKPFSIEELILKIEVFLKR 121
>gi|49480400|ref|YP_039253.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49331956|gb|AAT62602.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|15926996|ref|NP_374529.1| truncated (putative response regulator ArlR [S [Staphylococcus
aureus subsp. aureus N315]
gi|13701213|dbj|BAB42508.1| truncated (putative response regulator ArlR [S [Staphylococcus
aureus subsp. aureus N315]
Length = 133
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ ++ RFL L Y V + +G DK + L++ D+++P ++
Sbjct: 1 MTQ-ILIVEDEQNLARFLELELTHENYNVDTEYDGQDGLDKALSHYYDLIILDLMLPSIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ IT + + KPF + +L+ + +L
Sbjct: 60 GLEICRKIRQQQS-TPIIIITAKSDTYDKVAGLDYGADDYIVKPFDIEELLARIRAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|186683964|ref|YP_001867160.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186466416|gb|ACC82217.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 440
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L G++VV+ N+G+ A + E+ L+L D++MP +DG E
Sbjct: 18 ILVVDDTTTNLGIVFDILTNVGFKVVTENDGSRALKQAEEQLPDLILLDVMMPGIDGFET 77
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R E D+ V+F+T + ++KPF+ +L+ + L ++N
Sbjct: 78 CKRLKENSATYDIPVIFMTANSDTNSKVRGLNIGAVDYITKPFNEEELLARIKTHLQLRN 137
>gi|330950940|gb|EGH51200.1| PAS:GGDEF protein [Pseudomonas syringae Cit 7]
Length = 709
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G A V+++ L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGEMALAMVKQQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVATQLKAEKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIKN 122
LL +K+
Sbjct: 121 NLLRLKS 127
>gi|299139599|ref|ZP_07032773.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
gi|298598527|gb|EFI54691.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
Length = 251
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + R L + GY+V + ++G + + + L++TD+ MP+MDGI
Sbjct: 13 KKILVIDDEPSITRALRASFLANGYDVRTAHDGIAGLHVLEDWGPDLVVTDLAMPDMDGI 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E+ R+ + ++ ++ + ++KPF + +L+ V
Sbjct: 73 EICRQVRSK-SSIPIILLSVRDDTESKIRALDAGADDYVTKPFSIDELLARVRTA 126
>gi|239981817|ref|ZP_04704341.1| two-component system reponse regulator [Streptomyces albus J1074]
gi|291453676|ref|ZP_06593066.1| two-component system response regulator [Streptomyces albus J1074]
gi|291356625|gb|EFE83527.1| two-component system response regulator [Streptomyces albus J1074]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVRQDGPTALDAGLRGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRSDGHTVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|237737185|ref|ZP_04567666.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
gi|229421047|gb|EEO36094.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
Length = 227
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ R + K L GY V +C +G A + + ++L DI+MP+++G E
Sbjct: 2 RVLVVEDERDLNRVICKKLKVEGYSVDACYDGEEALLYIDGATYDIILMDIMMPKLNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+F+T A+ + KPFH +L+ + L+ +
Sbjct: 62 VLEKMRREKNSTPVLFLTAKDAIEDRVKGLDLGADDYIVKPFHFDELMARIRVLIRRNH 120
>gi|229081791|ref|ZP_04214283.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock4-2]
gi|228701379|gb|EEL53873.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock4-2]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|227832117|ref|YP_002833824.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|262184032|ref|ZP_06043453.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
gi|227453133|gb|ACP31886.1| two-component system response regulator [Corynebacterium
aurimucosum ATCC 700975]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G++V+ +G SA ++ ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFDVLLAPDGPSALEQFAANNVDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKQLR-TTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|307151759|ref|YP_003887143.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306981987|gb|ADN13868.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D ++ + L L + GY+V +NG + + + LL+ D ++P G++
Sbjct: 2 RILLVDDQVELTQPLSLVLSREGYQVDVADNGRTGLQLALDNGYDLLILDWMLPYQSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T + L KPF L++L+ V LL
Sbjct: 62 ICQKLRTEGKTTPVLFLTAKDTLDDRVMGLDVGADDYLVKPFQLKELLARVRALLRR 118
>gi|169826434|ref|YP_001696592.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
gi|168990922|gb|ACA38462.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +DD D+R + L GY V+ +G A DK+ L++ DI+MP M
Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLEALDKLENNEVHLIILDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + ++ ++ ++ A + ++KPFH +L+ V L
Sbjct: 61 DGITATFKIRAER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|158335372|ref|YP_001516544.1| two component LuxR family transcriptional regulator [Acaryochloris
marina MBIC11017]
gi|158305613|gb|ABW27230.1| two component transcriptional regulator, LuxR family [Acaryochloris
marina MBIC11017]
Length = 227
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +D+ +R + L +G+ V +N + ++ +++ L+++DI+MPE+D
Sbjct: 1 MTGHLLLVDDEPGLREAVQAYLEDSGFTVDVASNAKAGWELLQQRIPDLVISDIMMPEVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + E L ++F+T + LSKPF +LV V LL
Sbjct: 61 GYQFLAQLREDPRFMRLPIVFLTARGMTKDRIEGYNAGVDAYLSKPFDPDELVAIVTNLL 120
Query: 119 TIK 121
T K
Sbjct: 121 TRK 123
>gi|85710035|ref|ZP_01041100.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
gi|85688745|gb|EAQ28749.1| DNA-binding response regulator [Erythrobacter sp. NAP1]
Length = 264
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ +R L + L G+ V +GA+A + E ++L DI+MP DG+ L
Sbjct: 25 ILLVDDEATLREPLAEYLAGQGFCVTEAQSGAAARSALTEVSPDIVLLDIMMPGEDGLSL 84
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L V+F+T + KPF R+LV + +L
Sbjct: 85 CRHLVE-TRGLPVIFLTARGEATDRIVGLELGADDYIVKPFEPRELVARIRSVLRR 139
>gi|75762247|ref|ZP_00742136.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74490270|gb|EAO53597.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 247
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 21 ILIVDDDQDIVQFIKVNLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 81 CRRVREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135
>gi|326795781|ref|YP_004313601.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
gi|326546545|gb|ADZ91765.1| two component transcriptional regulator, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLA+DD + + + GYEV NG A D + E +++ D++MPE+DG +
Sbjct: 3 KLLLADDDARLSELVKEYFDGEGYEVTHAWNGREALDCMAMEMPDIVILDVMMPELDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T LSKPF+ R+L+ + +L
Sbjct: 63 TLKHIRAK-SSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR 118
>gi|307317852|ref|ZP_07597290.1| response regulator receiver modulated diguanylate cyclase
[Sinorhizobium meliloti AK83]
gi|306896614|gb|EFN27362.1| response regulator receiver modulated diguanylate cyclase
[Sinorhizobium meliloti AK83]
Length = 455
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A + P L+L DI+MP MD
Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ IT + L+KP + L++ V L+
Sbjct: 61 GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120
Query: 119 TIKN 122
+KN
Sbjct: 121 RLKN 124
Score = 69.4 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 43/120 (35%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + L +AL +V ++ +A K E F L++ + + D + L
Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFKAAESSFDLIIVNANFDDYDPLRL 214
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + ++ +T + + +P +LV + K+
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRRKH 274
>gi|301062846|ref|ZP_07203439.1| putative transcriptional activator protein CopR [delta
proteobacterium NaphS2]
gi|300443046|gb|EFK07218.1| putative transcriptional activator protein CopR [delta
proteobacterium NaphS2]
Length = 224
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + F+ L +AG+ V ++G EP+ + DI++P +DG+
Sbjct: 2 RILVVEDDPKIASFVANGLKEAGFAVDVAHDGVDGLHLGETEPYDAAMVDIMLPGLDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E V+ ++ +V ++KPF +L+ ++ L+
Sbjct: 62 LIEKLREKKITTPVIILSAKRSVDDRVRGLQTGGDDYMTKPFSFSELLARIHALIRR 118
>gi|297529552|ref|YP_003670827.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297252804|gb|ADI26250.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 241
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +RR L L + Y + +G A +K + ++L D+++P DGIE
Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + E +M +T + + KPF R++V V
Sbjct: 69 VCKEIREQ-KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119
>gi|284032355|ref|YP_003382286.1| multi-sensor signal transduction histidine kinase [Kribbella
flavida DSM 17836]
gi|283811648|gb|ADB33487.1| multi-sensor signal transduction histidine kinase [Kribbella
flavida DSM 17836]
Length = 1400
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L AG+ V + +G +A D+ R E L+++D++MP +DG+
Sbjct: 648 RVLIADDNADMREYLARLLRGAGHRVSAVTDGYAALDRARAETPDLIISDVMMPGLDGLR 707
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN---RLL 118
L + V+ ++ A + + L KPF +L+ V +L+
Sbjct: 708 LVADLRADGRTAGIPVLLLSARAGQEASIEGLEAGADDYLVKPFSAAELLARVQTNVKLV 767
Query: 119 TIKN 122
++N
Sbjct: 768 RLRN 771
>gi|183599669|ref|ZP_02961162.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
gi|188021923|gb|EDU59963.1| hypothetical protein PROSTU_03158 [Providencia stuartii ATCC 25827]
Length = 222
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED D++ +L KAL G+ V ++GA A ++ E +SL++ D+ +P + G+E
Sbjct: 2 RILLVEDHDELSLWLQKALSSTGFAVDIASDGAIADQLLQTESYSLVVLDVSLPRLSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+ +T + V+ L+KPF L +L + LL
Sbjct: 62 VLAQMRKRGQEIPVLLLTANSDVSDRVKGLNAGADDYLTKPFDLAELEARIRALLRR 118
>gi|163785606|ref|ZP_02180161.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
gi|159879126|gb|EDP73075.1| Response regulators consisting of a CheY-like receiver domain and a
HTH DNA-binding domain [Hydrogenivirga sp. 128-5-R1-1]
Length = 203
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + EDD+D+ L+ L K G +V S +G A + E L+L DI++P++DG+E+
Sbjct: 4 IYVVEDDEDINELLVYNLQKEGNKVKSFYSGKDALSSLENEKPDLILLDIMLPDIDGLEV 63
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T + ++KPF R+L+ + +L
Sbjct: 64 CKTVKSDPVKREIPIIMLTAKSTEIDKIVGLELGADDYITKPFSFRELLARIKAVLRR 121
>gi|75763869|ref|ZP_00743514.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74488640|gb|EAO52211.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 236
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQRLRADNNTTPVLLLTAKDXIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|300694206|ref|YP_003750179.1| transcriptional regulatory protein ompr [Ralstonia solanacearum
PSI07]
gi|299076243|emb|CBJ35557.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
PSI07]
Length = 245
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|312196948|ref|YP_004017009.1| multi-sensor signal transduction histidine kinase [Frankia sp.
EuI1c]
gi|311228284|gb|ADP81139.1| multi-sensor signal transduction histidine kinase [Frankia sp.
EuI1c]
Length = 1389
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L AG+ VV+ N+G +A D +R EPF L+++D++MP +DG+E
Sbjct: 632 RVLVADDNADMRGYLTRLLRGAGHTVVAVNDGRAALDALRAEPFDLVVSDVMMPGLDGLE 691
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + V+ ++ A + L KPF DL+ V
Sbjct: 692 LVAALRADRRTASVPVLLLSARAGEEASVQGLEAGADDYLVKPFAAADLLARVRA 746
>gi|260170315|ref|ZP_05756727.1| two-component system response regulator [Bacteroides sp. D2]
gi|298481287|ref|ZP_06999480.1| DNA-binding response regulator [Bacteroides sp. D22]
gi|315918677|ref|ZP_07914917.1| two-component system response regulator [Bacteroides sp. D2]
gi|298272491|gb|EFI14059.1| DNA-binding response regulator [Bacteroides sp. D22]
gi|313692552|gb|EFS29387.1| two-component system response regulator [Bacteroides sp. D2]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + +P++ ++ +T + D + KPF R+L + LL
Sbjct: 63 LAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|229051662|ref|ZP_04195131.1| Two-component response regulator [Bacillus cereus AH676]
gi|228721695|gb|EEL73170.1| Two-component response regulator [Bacillus cereus AH676]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|229198983|ref|ZP_04325670.1| Two-component response regulator [Bacillus cereus m1293]
gi|228584529|gb|EEK42660.1| Two-component response regulator [Bacillus cereus m1293]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|167745694|ref|ZP_02417821.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
gi|317472712|ref|ZP_07932026.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|167655006|gb|EDR99135.1| hypothetical protein ANACAC_00386 [Anaerostipes caccae DSM 14662]
gi|316899790|gb|EFV21790.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L +AGY+V+ +G A D + LL+ D++MP MDG
Sbjct: 5 KILVVDDESRMRKLVKDFLNRAGYQVLEAGDGEEAVDVFFSTKGIDLLVLDVMMPRMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R ++ ++ ++ +T + +SKPF + LV + +L
Sbjct: 65 EVVREIRKV-SEVPIIMLTAKDQENDELQGFDLGVDEYISKPFSPKILVARIEAILRR 121
>gi|42779713|ref|NP_976960.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42735630|gb|AAS39568.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILHDE-FEVDTALNGEDGLFLASQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|163938509|ref|YP_001643393.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229010010|ref|ZP_04167225.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229165524|ref|ZP_04293304.1| Two-component response regulator [Bacillus cereus AH621]
gi|163860706|gb|ABY41765.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228617972|gb|EEK75017.1| Two-component response regulator [Bacillus cereus AH621]
gi|228751292|gb|EEM01103.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|312887194|ref|ZP_07746798.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311300506|gb|EFQ77571.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L K GY+V NNG A + + L++ DI+MP+MDG
Sbjct: 5 KQKILIVDDEPDILELIEYNLKKEGYQVFVANNGQEAVAEAKRSLPDLIILDIMMPKMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + + ++F+T + ++KP R LV+ +N +L
Sbjct: 65 IEACRIMRTMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|291167031|gb|EFE29077.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
Length = 239
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + IL+ +DD ++ + + L Y+V+ ++G A D + L+L DI+MP+
Sbjct: 1 MNTETILVVDDDVEIAKSIQLYLNSQNYKVLVAHDGQEALDLFHNQKIDLILMDIMMPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GI+ + + ++ ++ + ++KPF+ +L+ VN +L
Sbjct: 61 NGIDTTMLIRQESI-IPIVILSAKSEDTDKIMGLNIGADDYITKPFNPMELIARVNSVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|260892434|ref|YP_003238531.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Ammonifex degensii KC4]
gi|260864575|gb|ACX51681.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Ammonifex degensii KC4]
Length = 470
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +D+ + L L ++GY VV+ +G A +KV +L DI MPEMD
Sbjct: 1 MAKLVLVVDDEKSVCEALKDVLEESGYSVVTATSGREALEKVNLIRPHAVLLDIRMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI++ + E P + V+ +T ++ ++ + + KP +L +L++ + +
Sbjct: 61 GIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELLSTLEKA 117
>gi|255532416|ref|YP_003092788.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255345400|gb|ACU04726.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L K GY+V NG ++ L++ DI+MP+MDG
Sbjct: 5 KQKILIVDDEPDILELIEYNLKKEGYQVYLAGNGQEGITIAKKVHPDLIILDIMMPKMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + + ++F+T + ++KP R LV+ +N +L
Sbjct: 65 IEACRLMRAIPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALVSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|257791925|ref|YP_003182531.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|257475822|gb|ACV56142.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
Length = 234
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ EDD D+ L L + Y+V + NG + + + S++L D++MPEM+
Sbjct: 1 MNETVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + A + + ++ I+ + ++KPF +++ + +L
Sbjct: 61 GFDFIKEARSV-SNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119
>gi|225569868|ref|ZP_03778893.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
15053]
gi|225161338|gb|EEG73957.1| hypothetical protein CLOHYLEM_05962 [Clostridium hylemonae DSM
15053]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+ V N+G K EE + L + D+++P +D
Sbjct: 1 MS-KILIVEDEEAIADLEKDYLELSGFHVEVANDGELGLKKALEEDYDLFILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + + ++ ++ ++KPF +LV V L
Sbjct: 60 GFDICRQVRNV-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|196037923|ref|ZP_03105233.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196031193|gb|EDX69790.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
Length = 224
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|52841668|ref|YP_095467.1| transcriptional regulatory protein CpxR [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|54294527|ref|YP_126942.1| transcriptional regulatory protein CpxR [Legionella pneumophila
str. Lens]
gi|33415232|gb|AAQ18123.1| CpxR [Legionella pneumophila]
gi|52628779|gb|AAU27520.1| transcriptional regulatory protein CpxR [Legionella pneumophila
subsp. pneumophila str. Philadelphia 1]
gi|53754359|emb|CAH15843.1| transcriptional regulatory protein CpxR [Legionella pneumophila
str. Lens]
gi|307610141|emb|CBW99687.1| transcriptional regulatory protein CpxR [Legionella pneumophila
130b]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD ++ L + L G+ VV ++G + + + F ++ D+++P+++
Sbjct: 1 MSSSILIIDDDTELTDLLTQYLEPEGFNVVCVHDGENGVKRALNQVFDAIILDVMLPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E + V+ +T L KP + R+LV + +L
Sbjct: 61 GFEVLKAIREHL-ETPVLMLTARGDDIDRIVGLEIGADDYLPKPCNPRELVARLRAILRR 119
>gi|332702972|ref|ZP_08423060.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
gi|332553121|gb|EGJ50165.1| multi-sensor hybrid histidine kinase [Desulfovibrio africanus str.
Walvis Bay]
Length = 736
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ R F+ L G+ V + NG A D + + F ++L D+ MPE+DG+E
Sbjct: 610 RILLAEDEQLNREFVTFFLLGEGHTVTTATNGCEALDLLERQDFDVVLMDVQMPELDGLE 669
Query: 64 LARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR L+ + ++ +T +A A LSKP + +L + R+L
Sbjct: 670 ATRRIRSLEKPDKAHVPIIALTAYAMKEDRERVMAAGMDDYLSKPLDMDELRRSLARILA 729
Query: 120 IK 121
+
Sbjct: 730 ER 731
>gi|313679439|ref|YP_004057178.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313152154|gb|ADR36005.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 222
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L L GYE+ +G S L++ D+++PEMDG+E
Sbjct: 3 KILIVDDDPAIREILRAYLSHEGYELSEAADGVS--ALALAPAADLVVLDLMLPEMDGLE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR P+L ++ +T ++KPF R+LV V LL
Sbjct: 61 VARHLRRDFPELPILMLTARGEEEERVRGFEEGADDYVTKPFSPRELVARVRALLRR 117
>gi|289450843|ref|YP_003474420.1| putative transcriptional regulatory protein CutR [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289185390|gb|ADC91815.1| putative transcriptional regulatory protein CutR [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ D+R + + L +GY V + +GA+ D + + L++ DI +P +DG
Sbjct: 2 KLLVVEDEQDLRESIAEGLRLSGYAVDTAADGAAGEDMLAAGNYDLVVLDINLPYLDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ +++V+ +T + L KPFH +L + LL +
Sbjct: 62 LLERLRAVNKEIRVIILTARTDIDDLVRGLDTGANDYLVKPFHFVELEARIRSLLRRR 119
>gi|238917107|ref|YP_002930624.1| two-component system, OmpR family, response regulator ResD
[Eubacterium eligens ATCC 27750]
gi|238872467|gb|ACR72177.1| two-component system, OmpR family, response regulator ResD
[Eubacterium eligens ATCC 27750]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
M++ K+L+ +D+ MR+ + L + GY V+ +G A D E +L++ D++MP
Sbjct: 1 MDKMKVLVVDDESRMRKLVSDFLTRKGYAVIEAADGVEAVDTFMENKDIALIILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ R+ + D + ++ +T + ++KPF + L V+ ++
Sbjct: 61 MDGWEVCRQIRK-DSKVPIIMLTAKGEEMDELQGFECGADEYIAKPFSPKILTARVDAII 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|197295461|ref|YP_002154002.1| two-component regulatory system, response regulator protein
[Burkholderia cenocepacia J2315]
gi|195944940|emb|CAR57552.1| two-component regulatory system, response regulator protein
[Burkholderia cenocepacia J2315]
Length = 239
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|169826322|ref|YP_001696480.1| two-component response regulator YcbL [Lysinibacillus sphaericus
C3-41]
gi|168990810|gb|ACA38350.1| two-component response regulator YcbL [Lysinibacillus sphaericus
C3-41]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD+ +R + L G++V + NNG A + F L++ DI++P+++
Sbjct: 3 MQKHILLVEDDEAIRDMVANFLLLEGFDVTTANNGEEALQYCLNQTFDLVILDIMIPKLN 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + E L ++ ++ + ++KPF + + V ++
Sbjct: 63 GLEVLKVIREQ-AALPIIIMSAKDSDVDKALGLGLGADDYIAKPFSMLEFSARVKAVIRR 121
>gi|160895572|ref|YP_001561154.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160361156|gb|ABX32769.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 241
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L + G ++G A R L+L DI +P MDGI++
Sbjct: 14 VLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLPGMDGIDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D V+ +T A + + KPF+ ++V V +L
Sbjct: 74 LRAIRD-DSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 128
>gi|91204350|emb|CAJ72003.1| strongly similar to sigma 54 response regulator [Candidatus
Kuenenia stuttgartiensis]
Length = 455
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 65/122 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ MR L L K GY+V S +N +R E F +++TD+ +P M+
Sbjct: 1 MSNKILIVDDEKLMRISLESQLKKEGYDVSSVDNANEGMSLIRSEEFDIVVTDLRLPNMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + +PD+ V+ +T + + + ++KPF +L+ ++ R L
Sbjct: 61 GMELLKEIKNYNPDIIVVIMTAYGTLESAVAATKEGAYDYIAKPFSTDELIIKLQRALQH 120
Query: 121 KN 122
KN
Sbjct: 121 KN 122
>gi|29830741|ref|NP_825375.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607854|dbj|BAC71910.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 269
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAVQTAREFRPDAVVLDMMLPDMDGLT 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160
>gi|77459576|ref|YP_349083.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77383579|gb|ABA75092.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
Length = 220
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + +ALG+ GY V +G+SA + E F L + D+ +P MDG+E
Sbjct: 2 RLLLIEDDVALGEGIHQALGREGYTVDWLKDGSSALHALLSENFDLAVLDLGLPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR +L V+ +T A L KPF L +L + LL
Sbjct: 62 VLRRLRGSGSNLPVLILTARDATEDRIAGLDAGADDYLIKPFDLAELKARLRALLRR 118
>gi|322806233|emb|CBZ03801.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 221
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSISLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|312886453|ref|ZP_07746062.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
gi|311301081|gb|EFQ78141.1| histidine kinase [Mucilaginibacter paludis DSM 18603]
Length = 1346
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+DD R +L ++L K+ Y V NG + K L+++D+ MP MDGIEL
Sbjct: 1085 ILLVDDNDDFRNYLKESLEKS-YTVTEATNGKDGWQKALSGHPDLVVSDVSMPVMDGIEL 1143
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---- 118
R+ + + V+ +T + + L+KPF L + ++
Sbjct: 1144 CRKIKTDKRTSFIPVILLTALGREEDHIRGLQTEANDYLTKPFSFEILNTRIKNMISLNQ 1203
Query: 119 TIKN 122
+KN
Sbjct: 1204 RLKN 1207
>gi|237720754|ref|ZP_04551235.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|229449589|gb|EEO55380.1| two-component system response regulator [Bacteroides sp. 2_2_4]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + +P++ ++ +T + D + KPF R+L + LL
Sbjct: 63 LAKEIRKTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|332971320|gb|EGK10283.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R L L AGY + G A D RE L++ D+++P++ G
Sbjct: 2 KNILIVDDEKKIREVLSSYLSHAGYRTLEAGTGRKALDIHREVAVDLIILDLMLPDLSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++ +T + A + KPF R++V V +L
Sbjct: 62 EVCREIRRQ-SAVPILMLTAKVEERHRLEGLAIGADDYVIKPFSPREVVARVQAILRR 118
>gi|302521422|ref|ZP_07273764.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|333024929|ref|ZP_08452993.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
gi|302430317|gb|EFL02133.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|332744781|gb|EGJ75222.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A R+ L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFRDTKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + V+ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|159044087|ref|YP_001532881.1| phosphate regulon transcriptional regulatory protein
[Dinoroseobacter shibae DFL 12]
gi|157911847|gb|ABV93280.1| phosphate regulon transcriptional regulatory protein
[Dinoroseobacter shibae DFL 12]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ VV NG A V EE +++ D ++P + GIE
Sbjct: 6 TVLVVEDEPAQRDVLCYNLEAEGFRVVQAENGDEAMVMVEEETPDIIVLDWMLPAVSGIE 65
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 66 VCRRLKSRPDTRAIPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRAQLRR 124
>gi|118591897|ref|ZP_01549292.1| putative transcription regulator protein [Stappia aggregata IAM
12614]
gi|118435540|gb|EAV42186.1| putative transcription regulator protein [Stappia aggregata IAM
12614]
Length = 245
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD +R L + L + GY V + + A A + F L++ D++MP G+E
Sbjct: 25 HILLVDDDKRIRDLLSRLLKENGYRVTTAAHAAEARTCLTGLEFDLIILDVMMPGETGLE 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
LA E + ++ +T + LSKPF R+L+ + +L N
Sbjct: 85 LAVSLREE-SSVPILMLTARSETPDRIAGLEAGVDDYLSKPFEPRELMLRIAAILRRGN 142
>gi|119946605|ref|YP_944285.1| two component transcriptional regulator, LuxR family protein
[Psychromonas ingrahamii 37]
gi|119865209|gb|ABM04686.1| two component transcriptional regulator, LuxR family protein
[Psychromonas ingrahamii 37]
Length = 295
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L AL GY + NG A + P ++L D +MP+MDG E
Sbjct: 9 VLVVDDSPESLGMLNVALNSQGYTALVALNGLQALAIAEKVPPDVVLLDAMMPQMDGFET 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR + P+ ++F+TG V ++KP +++ + R +
Sbjct: 69 CRRLKLILPNTPIIFMTGLTDVEDVVKGFEAGGVDYVTKPISPDEVIARIKRHIE 123
>gi|42781025|ref|NP_978272.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42736946|gb|AAS40880.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFMNVNLMQEGFKVFSAHNGEEALEIINKNNIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|320162057|ref|YP_004175282.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
gi|319995911|dbj|BAJ64682.1| OmpR family two-component response regulator [Anaerolinea
thermophila UNI-1]
Length = 235
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ + + L GYE S +G S R +++ D+++P MDGIE
Sbjct: 13 KILLIDDEISIHTVVTAYLKAEGYEYQSAMDGPSGLAMARSFKPDIIILDVMLPGMDGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ V+ +T + + L+KPF R+L+ + L
Sbjct: 73 LLAHLRRE-SNVYVIMLTARSEETDKIVGLSVGADDYLTKPFSPRELMARIKAALRR 128
>gi|253579461|ref|ZP_04856731.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849559|gb|EES77519.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 222
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++ + R + + L GYE +C +G + E + L+L D+ +P +DG+E
Sbjct: 2 HILIIEDEEQLCRSMAEGLRMDGYETDTCFDGEEGLELCMTENYDLILLDLNLPGIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + + V+ ++ + + L+KPFH +L + L K
Sbjct: 62 ILRQFRTFNTNTPVLILSARVQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRK 119
>gi|257124968|ref|YP_003163082.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
gi|257048907|gb|ACV38091.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+A+D+ + L + K + V + NG A +V E F ++L D++MP+ DG +
Sbjct: 3 KVLIADDNKQIVSILSEYCKKNNFIVSTVFNGEDALKEVEENKFDIVLLDVMMPKKDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ IT + KPF +++ +N +L
Sbjct: 63 VCREVRK-FSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRR 118
>gi|218232340|ref|YP_002366694.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|229178405|ref|ZP_04305773.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|218160297|gb|ACK60289.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228605043|gb|EEK62496.1| Two component transcriptional regulator, winged helix [Bacillus
cereus 172560W]
gi|326939716|gb|AEA15612.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus thuringiensis serovar chinensis CT-43]
Length = 229
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 1 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 60 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 119
>gi|330892053|gb|EGH24714.1| two-component response regulator transcription regulator protein
[Pseudomonas syringae pv. mori str. 301020]
Length = 236
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +DD ++ + L + L G++V++ ++G A + E F +++ DI+MP + G++
Sbjct: 3 KVLLIDDDVELTKILSQYLSNEGFDVLAIHDGEEAISRSANERFEIVVLDIMMPRLSGLQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ + ++ +T +SKP +LV + +L
Sbjct: 63 VLQRIR-INSSVPILMLTARGDDVDKVTGLNLGADDYVSKPCTPAELVARIRAILRR 118
>gi|322385260|ref|ZP_08058906.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
gi|321270683|gb|EFX53597.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100]
Length = 232
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L + GY V+ +G D R++ L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEMDILDIQKRYLMQEGYHVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSDQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|298675086|ref|YP_003726836.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
gi|298288074|gb|ADI74040.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
Length = 296
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ L L GY ++ NG A + + + ++L D++MP+++G E
Sbjct: 9 KILIVDDEPELVELLADYL--DGYNTIAAYNGQEAINIIESDNIDVILLDVMMPDINGFE 66
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D + V+ IT + L+KP +L V L IK
Sbjct: 67 VCTHIKNDDSLNYIPVLMITALSDHDNKIHGLDSGADDFLTKPVDGEELNARVRSALRIK 126
>gi|295705037|ref|YP_003598112.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
gi|294802696|gb|ADF39762.1| two-component response regulator PhoP [Bacillus megaterium DSM 319]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ + + A + GY V + ++G A +KV+ +++ D++MP++
Sbjct: 1 MNKKILVVDDEKSIATAVSYAFKREGYIVETASDGEEALEKVKSFQPDVMILDVMMPKLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E + ++ +T + ++KPF +R+LV L+
Sbjct: 61 GYEVCRKL-ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRR 119
>gi|238917425|ref|YP_002930942.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
gi|238872785|gb|ACR72495.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
Length = 227
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++D+R + + GY+V NG A D + + + D++M +MDGI L
Sbjct: 4 VLVVDDEEDIRELVGIYIKNEGYQVYKAANGKDALDIIDNMSIDITILDVMMADMDGITL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ + L+KPF+ +L+ V L
Sbjct: 64 CMEIRKK-SNIPIIMLSAKDQDMDKVIGLSAGADDYLAKPFNPVELIARVKAQLRR 118
>gi|226304543|ref|YP_002764501.1| OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
gi|226183658|dbj|BAH31762.1| putative OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
Length = 237
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L + G+ V ++G SA VRE +L++ D+++P DG+E
Sbjct: 13 RVLVVDDETALAKVVANYLTREGFTVRLAHDGPSAVRSVREFEPALIVLDLMLPGFDGME 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ ++ + A + KPF R+LV V LL
Sbjct: 73 VCRRIR-TFSDAYILMLSARGEESDKVTGLAAGADDYVVKPFGPRELVARVKALLRR 128
>gi|297194010|ref|ZP_06911408.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|197722840|gb|EDY66748.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 225
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAEDD + L +AL + GYEV +G +A D L++ D+ +P MDG+E
Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLAGGVDLVVLDLGLPGMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 63 VARRLRAEGHTIPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|307592366|ref|YP_003899957.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7822]
gi|306986011|gb|ADN17891.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7822]
Length = 813
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 7/126 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL EDD+ + + L + L K YEV +G + ++ V + L+L D ++P++ GIE
Sbjct: 2 KILCIEDDESLAKLLYQILVKQHYEVEIATDGETGWNLVTTSAYDLILLDWMLPKLTGIE 61
Query: 64 LARRAT-------ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + + D ++ +TG L KP +L+ +
Sbjct: 62 LCEKLRTRNGLIPSQNQDTPILLMTGLDTTTSKVMGLDAGADDYLVKPLDFEELLARIRA 121
Query: 117 LLTIKN 122
LL K+
Sbjct: 122 LLRRKS 127
Score = 77.1 bits (190), Expect = 7e-13, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 15/111 (13%)
Query: 26 GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-------------MDGIELARRATE-- 70
GY++ + ++ + + LL+ DI + +GIEL +
Sbjct: 528 GYQLTLLSEPQQFWEILEQSEPDLLILDIKFSKPASSDQEKERSSFFNGIELCQVIRNDL 587
Query: 71 LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L V+ ++ + LSKP +L+ V L +
Sbjct: 588 RWNRLPVILLSVHTDLETVQRGFMAGADDFLSKPVVASELLIRVRSRLKQR 638
Score = 67.9 bits (166), Expect = 5e-10, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 4 KILLAEDDDDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM----PE 58
+L+ E D +R+ L +AL G E A + +++L D+ P
Sbjct: 381 TLLILESDMTLRQLLVKEALT-WGIETQVATTLDEAEKLLNSGQCNVMLLDLNFYDSEP- 438
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ P L + +T + ++ N L KP ++ V + L
Sbjct: 439 -TGLQFLATLNRQHPSLPAIILTAEESFEKRIEAARWGNHYFLVKPVVPSQILAVVTQTL 497
Query: 119 T 119
Sbjct: 498 R 498
>gi|254424005|ref|ZP_05037723.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
[Synechococcus sp. PCC 7335]
gi|196191494|gb|EDX86458.1| cyclic diguanylate phosphodiesterase (EAL) domain protein
[Synechococcus sp. PCC 7335]
Length = 617
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D L K L AGYEV+ +NG A + +L+L DI+MP+MDG E
Sbjct: 22 RILIVDDTPTNLFVLSKLLTSAGYEVIQSSNGLEALMLAQSHQPALILLDIMMPDMDGHE 81
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + V+F++ A + A ++KPF +++ V + ++
Sbjct: 82 VCRRLRTVSATAHIPVIFLSALDAPLNKIQAFRSGAADYVTKPFQTEEVIARVQLQIELR 141
>gi|49478884|ref|YP_039110.1| response regulator protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|49330440|gb|AAT61086.1| response regulator protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
Length = 234
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ I++ +D+ ++R + L GY V+ NG + +++ L++ DI+MP++
Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|290770180|gb|ADD61939.1| putative protein [uncultured organism]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMEELIARIASLIRR 118
>gi|262281095|ref|ZP_06058877.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|299768811|ref|YP_003730837.1| response regulator [Acinetobacter sp. DR1]
gi|262257326|gb|EEY76062.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|298698899|gb|ADI89464.1| response regulator [Acinetobacter sp. DR1]
Length = 228
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYASFQQRKPNLMVLDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|224535953|ref|ZP_03676492.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
14838]
gi|224522441|gb|EEF91546.1| hypothetical protein BACCELL_00817 [Bacteroides cellulosilyticus DSM
14838]
Length = 1403
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++ + + K L A Y V + NNG A D V +E L+++D++MPEMDGIE
Sbjct: 1144 LIVEDNEELLQLMTKLL-GADYMVYTANNGKEAIDVVEQEEIDLIVSDVMMPEMDGIEFC 1202
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T ++ +SKPF+L L ++ LL +
Sbjct: 1203 QYIKNKFETSHIPVVLLTAKNKEEDRVEAYESGADGFISKPFNLSVLHARISNLLRSR 1260
>gi|220929662|ref|YP_002506571.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999990|gb|ACL76591.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 231
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED++ +R FL K + V+ G K R+E ++L D+++P +
Sbjct: 1 MENKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + PD+ ++ +T + KPF+ +L+ LL
Sbjct: 61 GFQVCETLRKEMPDVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRR 120
>gi|75908369|ref|YP_322665.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75702094|gb|ABA21770.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 443
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + +AL AG+EV + +G A ++++ L+L D++MP MDG E
Sbjct: 11 ILVVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQSRVPDLILLDVMMPVMDGFET 70
Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ V+F+T ++ + ++KPFH +++ ++ L +++
Sbjct: 71 CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISAHLQLRS 130
>gi|328884011|emb|CCA57250.1| Phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces venezuelae ATCC 10712]
Length = 226
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|312129843|ref|YP_003997183.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
gi|311906389|gb|ADQ16830.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +KIL+ EDD + + + K L + G++ +G P+ L+L D+ +PE
Sbjct: 1 MSDIKKILIVEDDLRIAQNISKGLMEKGFDTEIAYDGKIGVKLAISNPYDLILLDLNLPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G E+ + P + ++ +T + L KPF R+L+ +N +
Sbjct: 61 LNGYEVCSEVRKRKPSIPIIMLTALGETEDKIEGFERGADDYLVKPFDFRELLARINVFI 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|303241292|ref|ZP_07327797.1| response regulator receiver modulated diguanylate cyclase
[Acetivibrio cellulolyticus CD2]
gi|302591131|gb|EFL60874.1| response regulator receiver modulated diguanylate cyclase
[Acetivibrio cellulolyticus CD2]
Length = 310
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D + M + + L A Y+VV +NG KVREE L++ D+VMP MDG
Sbjct: 3 KKKILIIDDTEFMTKLITDILSSADYDVVIASNGLQGIQKVREEKPDLVILDVVMPGMDG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + + + + + ++ +T + KPF+ R+LV+ V L
Sbjct: 63 FEVCKILRDDESNNLMPIIMLTAQDNEDDKLAGLEIGADDYIIKPFNGRELVSRVRNTLK 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|295115378|emb|CBL36225.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SM4/1]
Length = 220
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN I++ +D+ + L Y V++ + A K+ E+ ++L DI MP MD
Sbjct: 1 MNDTIMVIDDEQMILDMLRDQFETEQYRVITAKSSGEALRKLIEQ-PDIILLDINMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R + ++F+T A + KPF L +L V L
Sbjct: 60 GLELCRLIRD-HVTCPILFLTARIEEADRVAGLRVGGDDYIMKPFSLAELTARVEAHLRR 118
Query: 121 KN 122
+N
Sbjct: 119 EN 120
>gi|120611665|ref|YP_971343.1| two component transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|120590129|gb|ABM33569.1| two component transcriptional regulator, winged helix family
[Acidovorax citrulli AAC00-1]
Length = 230
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + FL + L GY V G R +L++ D+++P M G++L
Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLALARAGEAALVILDVMLPGMTGLDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T +++ L+KPF +L+ + LL
Sbjct: 66 CQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRR 121
>gi|58581182|ref|YP_200198.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58425776|gb|AAW74813.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 777
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 549 MTGKKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 608
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 609 SGIEVLSAIRRA-SDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 667
Query: 120 I 120
Sbjct: 668 R 668
>gi|311896370|dbj|BAJ28778.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 224
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GYEV+ +G +A E L++ D+ +PEMDG+E+
Sbjct: 4 VLLAEDDPAISEPLARALRREGYEVLVREDGPAALGAGLSEDVDLIVLDLGLPEMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR V+ +T A ++KPF L +L+ V LL N
Sbjct: 64 CRRLRADGKSFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRRGN 121
>gi|296535607|ref|ZP_06897787.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
gi|296264062|gb|EFH10507.1| diguanylate kinase [Roseomonas cervicalis ATCC 49957]
Length = 459
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D R L L YEV ++G A + + ++L D++MP MD
Sbjct: 1 MSARILVVDDIAANLRLLEARLNAEYYEVALASSGPEALSRAEDWMPDIILLDVMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + LSKP L + LL
Sbjct: 61 GYEVCRRLKASTATAHIPVVMVTALVDASERVRGLEAGADDFLSKPVDHSTLFARLRALL 120
Query: 119 TIK 121
+K
Sbjct: 121 RVK 123
Score = 47.8 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 2/110 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLA +D + L L G + A+ + E F L L + + +G+ L
Sbjct: 156 ILLATEDVNEAELLTGVLAVDGVTLRLTGTATQAWQALSEGAFDLALLSLSLDGGEGLRL 215
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
A R DL V+ I L + +P +L
Sbjct: 216 ASRLRAQAATRDLPVLLIADADQHGLVLRGFELGANDHVLRPVDPNELRA 265
>gi|229131521|ref|ZP_04260411.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228651936|gb|EEL07883.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALELIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|183222571|ref|YP_001840567.1| putative response regulator receiver [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Paris)']
gi|189912606|ref|YP_001964161.1| response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167777282|gb|ABZ95583.1| Response regulator [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167780993|gb|ABZ99291.1| Putative response regulator receiver, transcriptional regulatory
protein (C-terminal) [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 224
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++D+ + L + G++ C+NG ++ + ++ D+++P + G++
Sbjct: 2 KILIVDDEEDIAGLIQFHLEEEGFQTEVCHNGMEVLPRLEKNLPDGIILDLMLPGIGGMD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E P + ++ +T + KPF++R+LV V +
Sbjct: 62 LCKRIKEKYPQIPILMVTAKTGETDVVLGLELGADDYIRKPFNIRELVARVRSVTRR 118
>gi|81298906|ref|YP_399114.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|81167787|gb|ABB56127.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 249
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L +GY+V +G + L++ D+++P +D
Sbjct: 1 MKPRILVIDDDSAILELVAVNLEMSGYDVRKAEDGIKGQALAVQLVPDLIMLDLMLPRVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R E ++ V+ +T + L+KPF + +++ V LL
Sbjct: 61 GFTVCQRLRRDERTAEIPVLMLTALGQTQDKVEGFNAGADDYLTKPFEVEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 QR 122
>gi|83859913|ref|ZP_00953433.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis
alexandrii HTCC2633]
gi|83852272|gb|EAP90126.1| sigma-54 dependent DNA-binding response regulator [Oceanicaulis
alexandrii HTCC2633]
Length = 498
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +DD RR + L K G+ + +G + ++V+ +++ D+VMP MD
Sbjct: 1 MAKTVLIVDDDPTQRRLMQAVLEKQGHLAETAEDGEAGLERVKRGGVDVVMLDMVMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE +PDL V+ +T + + KP + + L +
Sbjct: 61 GIETLEAIKARNPDLPVIVLTAHGGIETVVKAMRAGAVDFFVKPASPERIAVSIRNALKV 120
Query: 121 KN 122
K+
Sbjct: 121 KD 122
>gi|332290136|ref|YP_004420988.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
UMN179]
gi|330433032|gb|AEC18091.1| DNA-binding transcriptional regulator BasR [Gallibacterium anatis
UMN179]
Length = 220
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L L A Y V NG A V+ +P+ L+L D+ +P+ DG+E
Sbjct: 2 RVLLVEDDPMIANVLSANLKDASYAVDWVENGELALTAVKSQPYDLVLLDLGLPKKDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T + + KPF + +L+ + L ++
Sbjct: 62 VLAQLRQQQFSFPIIILTARDDLPSRLQGLDGGADDYIIKPFDMAELLARIRVALRKQS 120
>gi|229028114|ref|ZP_04184260.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228733205|gb|EEL84041.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 233
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ ++R + L GY+V+ +G + + L++ DI+MP++DG
Sbjct: 3 NETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEKNEVHLVVLDIMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 63 IHMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|113868407|ref|YP_726896.1| response regulator [Ralstonia eutropha H16]
gi|113527183|emb|CAJ93528.1| response regulator, phosphate regulon transcriptional regulator
PhoB, OmpR-family [Ralstonia eutropha H16]
Length = 235
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G A+ + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GANFAKELRANDRTRQIPIIMLTARGEEQDKVMGLEAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|15965047|ref|NP_385400.1| response regulator PleD [Sinorhizobium meliloti 1021]
gi|307301119|ref|ZP_07580888.1| response regulator receiver modulated diguanylate cyclase
[Sinorhizobium meliloti BL225C]
gi|15074226|emb|CAC45873.1| Response regulator containing a CheY-like receiver domain and a
GGDEF domain [Sinorhizobium meliloti 1021]
gi|306904074|gb|EFN34660.1| response regulator receiver modulated diguanylate cyclase
[Sinorhizobium meliloti BL225C]
Length = 455
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A + P L+L DI+MP MD
Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFDVLTAGDGHAALATCEKTPVDLVLLDIMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ IT + L+KP + L++ V L+
Sbjct: 61 GFEVCERLKANSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120
Query: 119 TIKN 122
+KN
Sbjct: 121 RLKN 124
Score = 68.6 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + L +AL +V ++ +A + E F L++ + + D + L
Sbjct: 156 VLLVDGRASSQERLTRALKPI-ADVAVISDPQAALFEAAESSFDLIIVNANFDDYDPLRL 214
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + ++ +T + + +P +LV + K+
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDERIVRALELGVTDYIMRPVDPNELVARSLTQIRRKH 274
>gi|87121478|ref|ZP_01077367.1| DNA-binding response regulator [Marinomonas sp. MED121]
gi|86163321|gb|EAQ64597.1| DNA-binding response regulator [Marinomonas sp. MED121]
Length = 239
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D ++R L + L K G V + + G S ++ F +++ D++MP DG+
Sbjct: 6 RVLVVDDHLEIRTLLAEYLHKHGMRVETADGGESMRQQLSRASFDVIVLDLMMPGEDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ +T A ++KPF R+L+ + L+
Sbjct: 66 LCRNIREK-SAIPVIMLTAMGEEADRIIGIEMGADDYITKPFSARELLARIKALVKR 121
>gi|118581362|ref|YP_902612.1| two component transcriptional regulator [Pelobacter propionicus DSM
2379]
gi|118504072|gb|ABL00555.1| two component transcriptional regulator, winged helix family
[Pelobacter propionicus DSM 2379]
Length = 223
Score = 147 bits (372), Expect = 6e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + F+ + L + Y V ++GA + + +SL + D+++P+ DG+
Sbjct: 2 KILVVEDEKKVAGFIKRGLEEDDYSVTIVHDGAEGLKQAQSGEYSLAILDVMVPKKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E + V+ +T L+KPF +L+ V LL
Sbjct: 62 VIRELREGGSQMPVLMLTARGTTDDIVSGLEAGADDYLTKPFAFAELLARVRALLRR 118
>gi|327439015|dbj|BAK15380.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 232
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +R F+ +L K GYEV+ +G A + R F ++L D+++P +DG +
Sbjct: 4 ILVVEDELSIRSFVSLSLRKKGYEVMEAESGEQALELFRNRNFDVVLLDLMLPGIDGFTV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +++ + ++ IT + L KPF L++L + L+
Sbjct: 64 CQEIRKVNQKVGIIMITAKTQEKDKIEGLVIGADDYLCKPFSLQELEVRIFSLMRR 119
>gi|326693245|ref|ZP_08230250.1| two-component response regulator [Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLRE-TKKTPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|317472867|ref|ZP_07932175.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316899667|gb|EFV21673.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 224
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++D+R L K L K Y C NG A D + + ++ DI++P ++G+E
Sbjct: 2 RLLIVEDEEDLRSILKKKLMKEHYTADDCGNGLDALDYINMADYDGIILDIMLPGLNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E D V+F+T + L KPF +L+ V ++ K
Sbjct: 62 LLKKIREEGNDTPVLFLTARDGIEDRVKGLDLGADDYLVKPFSFEELMARVRVMMRRK 119
>gi|312135286|ref|YP_004002624.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
gi|311775337|gb|ADQ04824.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor owensensis OL]
Length = 232
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KNILIVDDEQHILELLKFNLRKEGYNTFEADSGVQALEILKNSKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EILKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|261346399|ref|ZP_05974043.1| phosphate regulon transcriptional regulatory protein PhoB
[Providencia rustigianii DSM 4541]
gi|282565717|gb|EFB71252.1| phosphate regulon transcriptional regulatory protein PhoB
[Providencia rustigianii DSM 4541]
Length = 229
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ ++ SA ++ + L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ + D+ VM +T L KPF ++L+ V +L
Sbjct: 61 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|163787243|ref|ZP_02181690.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
gi|159877131|gb|EDP71188.1| two-component response regulator [Flavobacteriales bacterium ALC-1]
Length = 228
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ D+ + L GY+V++ NG A +K ++ L++ D++MPEMDGIE
Sbjct: 7 KILLVDDEPDILEIVGYNLSTEGYQVITGENGVEAVEKAKKYKPHLIILDVMMPEMDGIE 66
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + + F+T ++KP + L+++V LL
Sbjct: 67 ACERIREESDLSETIITFLTARGEDYSQVAGFDAGADDYIAKPIKPKVLLSKVKALLRR 125
>gi|163942945|ref|YP_001647829.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163865142|gb|ABY46201.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 223
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E+ +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|329939866|ref|ZP_08289167.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329301436|gb|EGG45331.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 220
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L K L GY V ++G + E P+ L++ DI++P M+G
Sbjct: 2 RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGPYDLVILDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++ +T + L+KPF LV V LL +
Sbjct: 62 VCAALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
>gi|304407935|ref|ZP_07389585.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342954|gb|EFM08798.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 235
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ ++ L L K GY+VV NG A++ ++ L + DI MP MD
Sbjct: 1 MDMTILITDDEIEIAELLQLFLEKEGYQVVVAYNGTEAWELLQHRTIDLAILDINMPLMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + V+ I+ + ++KPF+ ++V V L
Sbjct: 61 GFALLKHIRTIH-TFPVIVISARNSDYDKILGLGLGADDFIAKPFNPLEVVARVQAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|297565188|ref|YP_003684160.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296849637|gb|ADH62652.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 223
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ + L L + GY+ +G A + R L+L D+++P +D
Sbjct: 1 MSTSILIVEDEIRLAEILEDYLRREGYKTERAKDGGRALELWRVAQPDLILLDLMLPVLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR D+ ++ +T + KP+ R++V V +L
Sbjct: 61 GLEVARRIRAE-SDVPIIMLTARDDEVDKLVGLGLGADDYVVKPYSPREVVARVKAVLRR 119
>gi|291166732|gb|EFE28778.1| DNA-binding response regulator [Filifactor alocis ATCC 35896]
Length = 228
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R ++ L K GYEV +N AY+ ++ LL+ DI+M M+G+
Sbjct: 2 KHILIVDDEKRIRDLIVMYLKKEGYEVTDFDNADKAYEFLQNNEVDLLVLDIMMRGMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+L ++ + ++ ++F++ + L+KPF +R+LV + +L N
Sbjct: 62 DLCKKVR-MTSEVPIIFVSARSEELDRILGLELGADDYLAKPFSVRELVVRIKNILRRTN 120
>gi|229114181|ref|ZP_04243602.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228669201|gb|EEL24622.1| Two-component response regulator [Bacillus cereus Rock1-3]
Length = 223
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIQQKKFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|226949267|ref|YP_002804358.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|226844404|gb|ACO87070.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 221
Score = 147 bits (372), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|302534835|ref|ZP_07287177.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302443730|gb|EFL15546.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|228995632|ref|ZP_04155297.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229003260|ref|ZP_04161093.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757994|gb|EEM07206.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228764128|gb|EEM13010.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +GA + + L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|229160061|ref|ZP_04288063.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623372|gb|EEK80196.1| Two-component response regulator [Bacillus cereus R309803]
Length = 226
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V C +G A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLHAEHYSVDGCGSGEDALDYISMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|254384902|ref|ZP_05000238.1| two-component system response regulator [Streptomyces sp. Mg1]
gi|194343783|gb|EDX24749.1| two-component system response regulator [Streptomyces sp. Mg1]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAEGHGFPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|158338636|ref|YP_001519813.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158308877|gb|ABW30494.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD+ + L + L Y V ++G ++ + + L+L D+++P+MDG+
Sbjct: 2 KLLLVEDDERIAEALAEDLTDQHYAVDIAHDGEMGWELLEAFTYDLVLLDVMLPKMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D+ V+ +T A D + KP L ++ + LL
Sbjct: 62 FCRQMRAQGLDIPVLMLTARDTTANKVDGLDAGADDYVVKPCELEEISARIRALLRR 118
>gi|305667235|ref|YP_003863522.1| two-component system transcriptional regulator [Maribacter sp.
HTCC2170]
gi|88708169|gb|EAR00407.1| two-component system, transcriptional regulatory protein
[Maribacter sp. HTCC2170]
Length = 237
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L ++V NG ++K +++ + + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNNFDVTLAKNGMEGFEKFKKDNYDVCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR E + ++ ++F+T L+KPF L+ ++ +L K
Sbjct: 65 FTLAREIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124
>gi|146277961|ref|YP_001168120.1| two component transcriptional regulator [Rhodobacter sphaeroides
ATCC 17025]
gi|145556202|gb|ABP70815.1| two component transcriptional regulator, winged helix family
[Rhodobacter sphaeroides ATCC 17025]
Length = 230
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L G+ VV G A V E +++ D ++P + GIE+
Sbjct: 9 VLLVEDEPAQREVLSYNLESEGFRVVQAGTGDEALMLVEETGPDVIVLDWMLPSVSGIEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ ++ + + KP+ + +L+ V L
Sbjct: 69 CRQLKSRPSTRSVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVVELMARVRSQLRR 126
>gi|163847988|ref|YP_001636032.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525870|ref|YP_002570341.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163669277|gb|ABY35643.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449749|gb|ACM54015.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 231
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ +R + + L +AG+ V +G SA + R L++ D+++P +DG E+
Sbjct: 6 ILIVDDENRLRELIQRYLIQAGFRVAHAGDGLSALAQARTLRPDLIILDLMLPALDGFEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D ++ +T L KPF R+LV V +
Sbjct: 66 CRQLR-TFSDAYILMLTAKVEEPDRVKGLEVGADDYLVKPFSPRELVARVRAMFRR 120
>gi|319949621|ref|ZP_08023661.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
gi|319436708|gb|EFV91788.1| two-component response regulator RegX3 [Dietzia cinnamea P4]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+D + L L K G+EV +G SA + E ++L D+++P M
Sbjct: 1 MT-RVLIVEDEDSLADPLAFLLRKEGFEVGVAGDGPSALESFESEGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ +R + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKRLR-MTSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|307546911|ref|YP_003899390.1| transcriptional regulator [Halomonas elongata DSM 2581]
gi|307218935|emb|CBV44205.1| two component transcriptional regulator, winged helix family
[Halomonas elongata DSM 2581]
Length = 254
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVM 56
M +IL ED+ ++ R L++ L G+ ++G SA + + L++ D+++
Sbjct: 12 MTYRILCVEDNPEIGRMLVERLADEGHHCDRVSDGESALIALEGGASVAGYDLVMLDLML 71
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P +DG+E+ RR D V+ +T AA+ ++KPFH+ L+ V
Sbjct: 72 PGLDGLEVCRRLRRQDSRTPVLMVTAKAAIRDVVLGLEIGADDYVTKPFHMSILLARVQA 131
Query: 117 LLTI 120
LL
Sbjct: 132 LLRR 135
>gi|296393295|ref|YP_003658179.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
gi|296180442|gb|ADG97348.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length = 250
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + R L L G++V + + GA A + ++L D+ +P+MD
Sbjct: 1 MT-KILVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAQCHPEVVLLDLGLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + V+ ++ + D+ ++KPF + +L+ + +
Sbjct: 60 GFEVLAGLRGWTK-IPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118
>gi|229029708|ref|ZP_04185781.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1271]
gi|228731596|gb|EEL82505.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1271]
Length = 232
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E L L D+++P +DG +
Sbjct: 6 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDLALLDVMLPGIDGFQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 66 VCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|167757440|ref|ZP_02429567.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
gi|167703615|gb|EDS18194.1| hypothetical protein CLORAM_02990 [Clostridium ramosum DSM 1402]
Length = 219
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +M L L AGY +G K E+ + L+L D+++P ++
Sbjct: 1 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR E+ V+ +T V + L+KPF + +L+ +N LL
Sbjct: 61 GIEVCRRLREI-KQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 119
Query: 121 KN 122
N
Sbjct: 120 MN 121
>gi|162451220|ref|YP_001613587.1| phosphate regulon transcriptional regulatory protein phoB
[Sorangium cellulosum 'So ce 56']
gi|161161802|emb|CAN93107.1| Phosphate regulon transcriptional regulatory protein phoB
[Sorangium cellulosum 'So ce 56']
Length = 231
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ D++R L +AG++VVS +G +A V+EE F L+L D+++P+M
Sbjct: 1 MPSHVLIVEDERDLQRVLTYNFRQAGFDVVSAGSGETALRAVKEERFDLVLLDLMLPDMS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + + V+ +T + KPF +R+L+ +L
Sbjct: 61 GTEICRRLKQNPQTSAVPVIMVTAKGEEIDRIVGFELGADDYVVKPFSVRELILRARAIL 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|152973317|ref|YP_001338463.1| DNA-binding response regulator CreB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238892984|ref|YP_002917718.1| DNA-binding response regulator CreB [Klebsiella pneumoniae
NTUH-K2044]
gi|150958166|gb|ABR80196.1| catabolic regulation response regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238545300|dbj|BAH61651.1| catabolic regulation response regulator [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I L ED+ + L+ L + G++V G A + + + + D+ +P++ G E
Sbjct: 5 RIWLVEDEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P L V+F+T + ++KPF R++ V +L
Sbjct: 65 LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121
>gi|187926366|ref|YP_001892711.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12J]
gi|241665853|ref|YP_002984212.1| transcriptional regulator [Ralstonia pickettii 12D]
gi|187728120|gb|ACD29284.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12J]
gi|240867880|gb|ACS65540.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12D]
Length = 243
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|118480301|ref|YP_897452.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118419526|gb|ABK87945.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 241
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 20 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEG-PDVLILDVMLPDTDGYE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 79 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 135
>gi|300855125|ref|YP_003780109.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300435240|gb|ADK15007.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KILL +D+ + L AL + GY V +G A KV +++ D+++P M+
Sbjct: 1 MNEKILLVDDEKSILDVLTYALKREGYLVERAYDGEEALHKVDIFNPHIVILDLMLPVMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++ ++ +T + ++KPF +R+L+ + L+
Sbjct: 61 GYDICKKL--ENKNIGIIMLTAKEDIVDKILGLEFGADDYMTKPFDIRELLARIKSLVRR 118
>gi|312114151|ref|YP_004011747.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
gi|311219280|gb|ADP70648.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
Length = 244
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L + L G V +G + + V F L++ D++MP DG+
Sbjct: 6 HILVVDDDRRIRTSLKRFLTDNGMRVTEVADGVAMFAAVEAGRFDLIVLDVMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+ +T + + KPF R+L+ + +L
Sbjct: 66 LCRRLRG-TSKIPVVLLTAMSGETDRIIGLEIGADDYVCKPFSPRELLARIRAVLRR 121
>gi|114328635|ref|YP_745792.1| two-component response regulator chvI [Granulibacter bethesdensis
CGDNIH1]
gi|114316809|gb|ABI62869.1| two-component response regulator chvI [Granulibacter bethesdensis
CGDNIH1]
Length = 260
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q I L +DD ++ + L G++V + +G SA + P L + DI MP MD
Sbjct: 28 MTQTIALVDDDRNILTSVSMTLEAEGFQVRTYTDGESALQGLTTRPVDLAVLDIKMPRMD 87
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R L V+F+T ++KPF R L+ + LL
Sbjct: 88 GMELLQRLRARTA-LPVIFLTSKDEEVDQLMGLRLGADDYITKPFSQRLLIERIRALLRR 146
>gi|78486516|ref|YP_392441.1| response regulator receiver (CheY-like) modulated metal dependent
phosphohydrolase [Thiomicrospira crunogena XCL-2]
gi|78364802|gb|ABB42767.1| response regulator receiver modulated metal dependent
phosphohydrolase [Thiomicrospira crunogena XCL-2]
Length = 348
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + + + L + GY+ +G A E F L+L DI+MP MDG E
Sbjct: 6 HILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFDLILLDIMMPRMDGYE 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ ++F+T + ++KPFH +L+ V L +
Sbjct: 66 TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHGEELIARVKTHLEL 124
>gi|150018483|ref|YP_001310737.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149904948|gb|ABR35781.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V + G A D + +E L++ DI+MP MD
Sbjct: 1 MNN-ILVVDDEKEIRNLLEINLRNEGYNVFKASCGEEALDILEKEEIHLIVLDIMMPHMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR E ++ ++ ++ + + KPF+ +L+ V L+
Sbjct: 60 GLEVCRRVREKY-NIPILMLSAKSEDMDKIQGIMTGADDYVCKPFNQLELIVRVKALMRR 118
>gi|119386151|ref|YP_917206.1| two component transcriptional regulator [Paracoccus denitrificans
PD1222]
gi|119376746|gb|ABL71510.1| two component transcriptional regulator, winged helix family
[Paracoccus denitrificans PD1222]
Length = 239
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++R L + L G+ V + + +V + L++ D+++P+
Sbjct: 1 MN-HILIVDDDPEIRNLLRRYLEGQGFRVSTAADRRECEARVTDGAPDLIVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R E P+L+++ +T L KPF+ R+LV + +L
Sbjct: 60 GLDICRSLHEHRPELRIILLTALKEDVDRIIGLELGADDYLGKPFNPRELVARIKAVLRR 119
>gi|326333582|ref|ZP_08199821.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
Broad-1]
gi|325948598|gb|EGD40699.1| DNA-binding response regulator TrcR [Nocardioidaceae bacterium
Broad-1]
Length = 244
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ ++ AL G+EV + + G A R+ ++ D ++P+ DG+E
Sbjct: 20 RVLVVDDEVNIAELIMMALRYEGWEVAAAHTGTKAVSAARDFTPDAIVLDWMLPDFDGLE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR +P + V+F+T AV ++KPF L +LV + L+
Sbjct: 80 VLRRVRSTNPAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEELVARLRALMRR 136
>gi|317968176|ref|ZP_07969566.1| two-component response regulator [Synechococcus sp. CB0205]
Length = 246
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 54/119 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+I + +DD + RR + L GY+V ++G ++ + L++ D+++P DG+
Sbjct: 10 QRIWVVDDDAEQRRLVGTYLTDQGYDVRCLSSGEQLMVRLESQRPDLVVLDVMLPGEDGL 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + DL V+ +T L KPF R+L + +L +
Sbjct: 70 TLLRRLRDGGDDLPVVMLTAKGDGIDRIIGLEQGADDYLGKPFLPRELTARIEAVLRRR 128
>gi|256545102|ref|ZP_05472468.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170]
gi|256399143|gb|EEU12754.1| regulatory protein VanR [Anaerococcus vaginalis ATCC 51170]
Length = 231
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D++ +R+F+ L AG+ ++ +G A EE + + DI++P +
Sbjct: 1 MSDKILICDDEEHIRQFMKINLEYAGFNIIEAGSGEEALKLADEEEPLVCILDIMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + P + ++ ++ + + KPF+ ++L+ V L+
Sbjct: 61 GYEVCDSIRKKYPKVGIIMVSAKSQDIDKILGLERGCDDYIIKPFNPQELILRVKSLMRR 120
>gi|224823780|ref|ZP_03696889.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
gi|224604235|gb|EEG10409.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
Length = 241
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +DD ++ L L + G V NG+ + LL+ D++MP ++GIE
Sbjct: 15 KVLLVDDDVELAEMLRDYLEREGCMVALAANGSDGLALALSGDYHLLVLDVMMPGINGIE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + L V+ +T + KP R+L+ + +L
Sbjct: 75 VLRRLRQQ-SALPVLMLTAKGDDLDRVLGLELGADDYVPKPCTPRELLARIRAILRR 130
>gi|162149578|ref|YP_001604039.1| phosphate regulon transcriptional regulatory protein phoB
[Gluconacetobacter diazotrophicus PAl 5]
gi|161788155|emb|CAP57760.1| putative phosphate regulon transcriptional regulatory protein phoB
[Gluconacetobacter diazotrophicus PAl 5]
Length = 239
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD+ + L L K GYEV +G A +V L++ D ++P + G+++
Sbjct: 16 ILVVEDDEALLMMLRYNLEKLGYEVGVAEDGEQALARVAVRRPDLMVLDWMLPGLSGLDV 75
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++ +T A A + ++KP + L + L+
Sbjct: 76 CRRLRDQEATRTLPIIMLTARAGEADHIRGLDIGADDYVTKPCSIEALQARIRALMRR 133
>gi|126662822|ref|ZP_01733821.1| two-component system response regulator [Flavobacteria bacterium
BAL38]
gi|126626201|gb|EAZ96890.1| two-component system response regulator [Flavobacteria bacterium
BAL38]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL EDD+ + L + ++V CNNG A+ +E F L + DI++P+MDG
Sbjct: 3 KKRILYVEDDETLAFLTADNLEQH-FDVTHCNNGKEAFQLFCKETFDLCVLDIMLPDMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A + + ++ ++F++ L KP+ + +L+ ++ L
Sbjct: 62 FEIATEIRKRNQEIPIIFLSAKTMKEDRIKGLKLGADDYLVKPYSIEELILKIEIFLNR 120
>gi|116253196|ref|YP_769034.1| two-component response regulator transcriptional regulatory protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|115257844|emb|CAK08942.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GIE
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|310827869|ref|YP_003960226.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium limosum
KIST612]
gi|308739603|gb|ADO37263.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium limosum
KIST612]
Length = 241
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +DD ++ L++ L + GYEV + + GA+ +++ E+ L++ D+++PEM
Sbjct: 7 MRERILIIDDDVELCSLLLRCLEREGYEVCAAHTGAAGLNRLDEKEAVLVILDVMLPEMS 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + V+ +T + L+KPF + + + V L+
Sbjct: 67 GFAVLSELRK-TKSIPVLMLTARDSEKDKVQGLKTGADDYLTKPFSINEFMARVESLIRR 125
>gi|251798517|ref|YP_003013248.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247546143|gb|ACT03162.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 228
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R + L G+ V+ +G+ A D + ++ L++ D++MP MDGI+
Sbjct: 4 ILVVDDDTEIRDVIHVYLRNEGHSVLEAGDGSEAIDLLVQQEVDLVILDVMMPRMDGIKA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E + ++ ++ + ++KPF+ +L+ V L +
Sbjct: 64 CMHIREQYS-VPIIMLSAKEGDIDKIMGLSIGADDYVTKPFNPMELIARVKAQLRRQ 119
>gi|125717941|ref|YP_001035074.1| two-component response transcriptional regulator [Streptococcus
sanguinis SK36]
gi|125497858|gb|ABN44524.1| Two-component response transcriptional regulator (CheY-like
receiver domain and a winged-helix DNA-binding domains),
putative [Streptococcus sanguinis SK36]
Length = 232
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|89897562|ref|YP_521049.1| hypothetical protein DSY4816 [Desulfitobacterium hafniense Y51]
gi|89337010|dbj|BAE86605.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 232
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+LA+D++ +R + + + GY+ +GA A E L++ D++MP+++G +
Sbjct: 2 KIMLADDEESIRIVVEHIVTEDGYDFCYAADGAEALSVFEAENPDLVILDVMMPKLNGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++ ++ ++ + L KPF +L + LL +
Sbjct: 62 VCTQLRKKGSNVPIIILSAKGDIVDKSVGFKAGADDYLVKPFSTLELSLRIEALLRRR 119
>gi|296505684|ref|YP_003667384.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|296326736|gb|ADH09664.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 223
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|291548336|emb|CBL21444.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + + + L GYE +C +G + E + L+L D+ +P +DG+E
Sbjct: 2 HILIIEDEKQLCQSIAEGLRMDGYEADTCFDGDEGLELCLVENYDLILLDLNLPGVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E D V+ ++ + + L+KPFH +L + L K
Sbjct: 62 ILRQFRESDTSTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRK 119
>gi|153854770|ref|ZP_01996004.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
gi|149752677|gb|EDM62608.1| hypothetical protein DORLON_02002 [Dorea longicatena DSM 13814]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y+V NG A D + L + DI++P++D
Sbjct: 5 MN--ILVVDDEKEIADVVELYLQNDQYKVFKFYNGQDALDCINSTKIDLAILDIMLPDID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + KPF+ +LV V L
Sbjct: 63 GFQILKQIRQKY-TFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 121
>gi|146283051|ref|YP_001173204.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
gi|145571256|gb|ABP80362.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
Length = 243
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V +G A V P+ LL+ D++MP +DG E
Sbjct: 18 KLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+F+T V L KPF +L+ V LL N
Sbjct: 78 VLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 136
>gi|327404313|ref|YP_004345151.1| winged helix family two component transcriptional regulator
[Fluviicola taffensis DSM 16823]
gi|327319821|gb|AEA44313.1| two component transcriptional regulator, winged helix family
[Fluviicola taffensis DSM 16823]
Length = 223
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++D+R L L K G++V NG + +EE L++ D++MP MDGIE
Sbjct: 3 KILIVDDEEDIREILGYNLKKEGFKVFLAENGQTGISICKEEKPDLVILDVMMPGMDGIE 62
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ + F+T +SKP R L++ V+ LL K
Sbjct: 63 VCDQIRNTKGLENVLICFLTARNEDYSQIAGLDAGADDYISKPIKPRVLISRVHALLRRK 122
>gi|313496636|gb|ADR58002.1| GltR [Pseudomonas putida BIRD-1]
Length = 239
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D
Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L
Sbjct: 61 GLSLCRQL-QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119
>gi|320109408|ref|YP_004184998.1| winged helix family two component transcriptional regulator
[Terriglobus saanensis SP1PR4]
gi|319927929|gb|ADV85004.1| two component transcriptional regulator, winged helix family
[Terriglobus saanensis SP1PR4]
Length = 234
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ + R L +L +GY+V ++G +++ + + L++TD+ MPEM+
Sbjct: 1 MAKRILVVDDERQITRMLRTSLQSSGYDVSIASDGLEGFERFKADQPDLIVTDLAMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + + ++ ++ + + L+KPF + +L+ + L
Sbjct: 61 GLELTQAVRRM-ATTPIIVLSVRDTDTMKITALDEGADDYLTKPFSMPELLARIRVQLRR 119
>gi|302529718|ref|ZP_07282060.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302438613|gb|EFL10429.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 238
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I+LAEDD + + L + V G +A ++R LL+ D+++P M+
Sbjct: 10 MCANIVLAEDDPKQAELVRRYLEHEQHTVTVAPTGEAALAEIRAAEPDLLILDVMLPGMN 69
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R DL ++ +T + ++KP+ R+L+ V LL
Sbjct: 70 GLTVCRTIRA-SSDLPILMLTARSTEDDLLQGLDLGADDYVTKPYSPRELMARVRTLLRR 128
Query: 121 KN 122
N
Sbjct: 129 TN 130
>gi|255024504|ref|ZP_05296490.1| two-component response phosphate regulator [Listeria monocytogenes
FSL J1-208]
Length = 169
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L + KAG++VV+ +G + Y+ E L++ D+++PEMDGIE
Sbjct: 3 KILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 63 VTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 119
>gi|209964834|ref|YP_002297749.1| response regulator With diguanylate cyclase (GGDEF) domain,
putative [Rhodospirillum centenum SW]
gi|209958300|gb|ACI98936.1| response regulator With diguanylate cyclase (GGDEF) domain,
putative [Rhodospirillum centenum SW]
Length = 482
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + L L + ++V++ G A DK+R + ++L D++MP MD
Sbjct: 1 MSARVLVVDDVVPNVKLLAAKLTREYFDVITAYGGPEALDKIRSQSPDIVLLDVMMPGMD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + VA L+KP + L V L+
Sbjct: 61 GFEVCERIRSDPSVMHIPVVMVTALSDVADRVRGLEAGADDFLTKPVNDVALFARVRSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 93.7 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 44/122 (36%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ ED + + L + VV N A+A + + F L++ + + DG
Sbjct: 155 NSRILVVEDSSIDMDKIRETLARDRDGVVEAENCAAALELALSQDFELVIISLTLMREDG 214
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L + E + ++ + + + KP +L+ +
Sbjct: 215 LRLCSQLRSHERTRQVPILLLADETDMDRVAKGLELGANDYVIKPIDRNELMARTRTQVR 274
Query: 120 IK 121
K
Sbjct: 275 RK 276
>gi|187918615|ref|YP_001884180.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH]
gi|119861463|gb|AAX17258.1| sigma-54-dependent transcriptional activator [Borrelia hermsii DAH]
Length = 451
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+A+D+ ++R + L + GY V + ++G A + + E +++D+ MP++
Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGEEALETIENEKIDAIISDLRMPQIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + +P++ + +T V D+ L+KP L L+ + R L
Sbjct: 60 GEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNG 119
Query: 121 KN 122
KN
Sbjct: 120 KN 121
>gi|197116410|ref|YP_002136837.1| response receiver sensor histidine kinase [Geobacter bemidjiensis
Bem]
gi|197085770|gb|ACH37041.1| response receiver sensor histidine kinase, PAS domain-containing
protein [Geobacter bemidjiensis Bem]
Length = 511
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ D+ L L AGYE V +G A + V +EPF L++ DI MP M
Sbjct: 1 MQKDKILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAQEPFDLIMLDIKMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+E+ R + V+ +T + + D+ +SKPF D++ +V R +
Sbjct: 61 DGLEVLSRLK--GDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAI 117
>gi|126650615|ref|ZP_01722838.1| transcriptional activator protein [Bacillus sp. B14905]
gi|126592771|gb|EAZ86770.1| transcriptional activator protein [Bacillus sp. B14905]
Length = 230
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + + L K L K+GY V + +G A + + L++ D+ +P+MDGIE
Sbjct: 2 KLLLVEDEAVLSKILSKGLKKSGYAVDTAFDGEEALELFEINEYDLIILDLNLPKMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+K++ ++ +A+ L KPF ++L + LL
Sbjct: 62 VLEQIRVQSEDVKILILSARSAIHDKIAGLDRGANDYLIKPFDFQELDARIRNLLRR 118
>gi|89889387|ref|ZP_01200898.1| two component system response regulator [Flavobacteria bacterium
BBFL7]
gi|89517660|gb|EAS20316.1| two component system response regulator [Flavobacteria bacterium
BBFL7]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 62/117 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAED+ + + ++L GYEV C+NG AY ++ + + D++MPE+DG L
Sbjct: 8 ILLAEDEPALGLIVKESLETRGYEVNHCHNGIEAYQSFEQQTPDIAVLDVMMPELDGFSL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
A++ ++ + ++F+T + + L KPF + +L+ + LL+ +
Sbjct: 68 AKKIRTVNEQMPIIFLTAKSQTEDVLEGFHVGGNDYLKKPFSMEELIVRIKNLLSRQ 124
>gi|86739186|ref|YP_479586.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86566048|gb|ABD09857.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 226
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G+EV +G SA + L+L D+++P +
Sbjct: 1 MT-RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRTLR-TRSTVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 RS 120
>gi|46199662|ref|YP_005329.1| transcriptional regulatory protein [Thermus thermophilus HB27]
gi|55981691|ref|YP_144988.1| putative response regulator [Thermus thermophilus HB8]
gi|46197288|gb|AAS81702.1| transcriptional regulatory protein [Thermus thermophilus HB27]
gi|55773104|dbj|BAD71545.1| putative response regulator [Thermus thermophilus HB8]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +DD + L L AG+EV+ +G A + + L++ D+++P++ G+E
Sbjct: 2 KVLLVDDDPAILEVLGAFLRGAGFEVLEAEDGEKALELFPQA--DLVILDLMLPKVGGLE 59
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR + P+L ++ +T + KPF R++V V LL
Sbjct: 60 VARLIRQERPELPLLILTAKGEEEDRVLGLELGADDYVVKPFSPREVVARVKALLRR 116
>gi|309792204|ref|ZP_07686676.1| diguanylate cyclase [Oscillochloris trichoides DG6]
gi|308225745|gb|EFO79501.1| diguanylate cyclase [Oscillochloris trichoides DG6]
Length = 647
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+A+DD + L + L GYEV +NG +++P LLL D++MP MDG
Sbjct: 29 ERILIADDDPALCLLLRETLQDVGYEVRIASNGDELVRMAQDQPPDLLLVDLMMPLMDGF 88
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R+ L ++ +T + + + KP+ + L+ + L
Sbjct: 89 EAIRQLRNDTRTAHLPMIILTARSTSSDVVTGFDSGADDYIIKPYDVDVLLARIRSHLRR 148
>gi|300691227|ref|YP_003752222.1| DNA-binding response regulator in two-component regulatory system
with phoR [Ralstonia solanacearum PSI07]
gi|299078287|emb|CBJ50935.1| DNA-binding response regulator in two-component regulatory system
with phoR [Ralstonia solanacearum PSI07]
Length = 237
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ A+ E + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|229156123|ref|ZP_04284221.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
gi|228627306|gb|EEK84035.1| hypothetical protein bcere0010_23120 [Bacillus cereus ATCC 4342]
Length = 231
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + + ++ +T ++KPF +L+ V L
Sbjct: 61 GLTICQKIRDKY-NYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|29345776|ref|NP_809279.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29337669|gb|AAO75473.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1420
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L + Y V+ NG A + P +++D++MP MDGIEL
Sbjct: 1169 ILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR E + + +T + +S + L KPF L+ + +L +
Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLARIQNILENR 1286
>gi|300813426|ref|ZP_07093772.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512463|gb|EFK39617.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED++ +R+F+ L + GY V +G D R + +++ DI++P +D
Sbjct: 1 MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G + + + P+L ++ +T A L+KPF+ +L +
Sbjct: 61 GFAVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIK 115
>gi|299146067|ref|ZP_07039135.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
gi|298516558|gb|EFI40439.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
Length = 224
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V C++G + + ++++PF LL+ DI+MP+++G+E
Sbjct: 3 KILLVEDEINIASFIERGLKEFGHSVTVCHDGDTGWKILQDKPFDLLILDIIMPKINGLE 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ + V+ +T L KPF ++L + LL
Sbjct: 63 LCRLYRQMFGYQIPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|294627904|ref|ZP_06706483.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666844|ref|ZP_06732076.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292597818|gb|EFF41976.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603361|gb|EFF46780.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K +E + + +A + + L+L D ++P
Sbjct: 1 MQKRILIVDDEPAIRDMVAFALRKGEFEPIHAGDARAAQTAIADRVPDLILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++LARR +L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLDLARRWRKEQLTREIPIIMLTARGEENDRVGGLEAGVDDYVVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|154497232|ref|ZP_02035928.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
29799]
gi|150273631|gb|EDN00759.1| hypothetical protein BACCAP_01525 [Bacteroides capillosus ATCC
29799]
Length = 223
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+ +R + AL AGYE V NG A + + + L++ DI+MP+MDG E
Sbjct: 3 RILVVEDDNGIRMLMEDALADAGYEPVLACNGLEALEVLESKHIDLIILDIMMPKMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E D+ V+ +T ++ + KPF +++ V LL
Sbjct: 63 LLRQIRESGMDMPVLLVTAKQTLSDKKKGFLLGADDYMVKPFEEEEMLLRVAALLRR 119
>gi|148262094|ref|YP_001228800.1| multi-sensor signal transduction histidine kinase [Geobacter
uraniireducens Rf4]
gi|146395594|gb|ABQ24227.1| PAS/PAC sensor hybrid histidine kinase [Geobacter uraniireducens
Rf4]
Length = 508
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ D+ L L AGY+ + +G A + E F+L+L DI MP M
Sbjct: 1 MEKDKILIVDDEPDIALILKLQLEDAGYKTATARDGVEALAAIAREKFALVLLDIKMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ R D+ V+ +T + + ++ ++KPF D++ +V R +
Sbjct: 61 DGMQVLERVQSHYSDVAVVMMTAHGSEDIAVEAMKNGAFDYIAKPFSSEDVLQKVKRAIQ 120
Query: 120 I 120
+
Sbjct: 121 L 121
>gi|253579795|ref|ZP_04857063.1| two-component system response regulator [Ruminococcus sp.
5_1_39B_FAA]
gi|251848794|gb|EES76756.1| two-component system response regulator [Ruminococcus sp.
5_1_39BFAA]
Length = 230
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|253573665|ref|ZP_04851008.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
gi|251847193|gb|EES75198.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14]
Length = 226
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +DD +R + L +AG +V+ NG A V E +++ DI+MPEMDG
Sbjct: 3 KILVVDDDQHIRELVRLFLEEAGIDQVMEAENGRKALALVESEKVDMVILDIMMPEMDGW 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R D+ ++ +T L KPF +LV V LL
Sbjct: 63 DLCRELR-RYYDMPLLMLTAKGETRQVVKGFELGTDDYLVKPFEPAELVARVKALLKR 119
>gi|227821649|ref|YP_002825619.1| response regulator PleD [Sinorhizobium fredii NGR234]
gi|227340648|gb|ACP24866.1| two component response regulator [Sinorhizobium fredii NGR234]
Length = 455
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ ++G SA P L+L DI+MP+MD
Sbjct: 1 MTARILVVDDVPANLKLLEARLVAEYFDVLTASDGRSALAVCENTPVDLVLLDIMMPDMD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T + L+KP + L++ V L+
Sbjct: 61 GFEVCERLKANNRTTHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120
Query: 119 TIKN 122
+KN
Sbjct: 121 RLKN 124
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + L++AL EV ++ +A + E F L++ + + D + L
Sbjct: 156 VLLVDGRASSQERLLRALKPI-AEVAVISDPQAALFEAAENSFDLVIVNANFDDYDPLRL 214
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + ++ +T + + + + +P +LV + K+
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGSEEMIVRALELGVTDYIMRPVDPNELVARSLTQIRRKH 274
>gi|220907975|ref|YP_002483286.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
gi|219864586|gb|ACL44925.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
Length = 381
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D D + L GYEV + +G +A ++V P L+L D++MP M+G
Sbjct: 13 EHILVVDDSADNLFLIQTILESEGYEVSTATHGKAALEQVVNAPPDLVLLDVMMPGMNGY 72
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + P + ++ IT + + KP +L+ V LL +
Sbjct: 73 EVTRRIRLNKSLPFMPILLITAHDRPR-VAEGLDLGADDFIRKPVEYDELLARVRSLLRL 131
Query: 121 K 121
K
Sbjct: 132 K 132
>gi|189464923|ref|ZP_03013708.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
17393]
gi|189437197|gb|EDV06182.1| hypothetical protein BACINT_01267 [Bacteroides intestinalis DSM
17393]
Length = 1341
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED+ +M F+ + L Y VV+ NG A + + +L+++D+VMP MDG
Sbjct: 1094 KHTVLVVEDNPEMLAFIERQLSSQ-YAVVTATNGREALEALDRNFVNLVVSDVVMPLMDG 1152
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + + V+ +T + + + KPF L+ V+ L+
Sbjct: 1153 FELCKTIKSNVGYSHIPVILLTAKTNIQSKIEGMELGADSYIEKPFSPEYLLAVVSNLIN 1212
Query: 120 IK 121
+
Sbjct: 1213 NR 1214
>gi|111223230|ref|YP_714024.1| putative response regulator in two-component regulatory system
[Frankia alni ACN14a]
gi|111150762|emb|CAJ62464.1| putative response regulator in two-component regulatory system
[Frankia alni ACN14a]
Length = 246
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ L + L + GY V +G A + E + ++ D+++P +DG E
Sbjct: 2 RVLVVEDEVRTAAVLRRGLVEEGYAVDVVGDGIDAVWRATEIAYDAIVLDLMLPGIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T V L KPF +L + L+
Sbjct: 62 VCRRLRAGHRWAPVLMLTARVDVDDRIRGLDAGADDYLPKPFSFGELTARLRALVRR 118
>gi|75906463|ref|YP_320759.1| multi-component transcriptional regulator [Anabaena variabilis ATCC
29413]
gi|75700188|gb|ABA19864.1| multi-component transcriptional regulator, winged helix family
[Anabaena variabilis ATCC 29413]
Length = 1629
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ L L Y V ++G +A++ ++ + L+L D+++P +DGI
Sbjct: 2 KILIVEDDELNAYALTAVLTNQNYAVEVGSDGITAWELIQTYDYDLILLDVILPRLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + ++ +TG + + KPF +LV V LL
Sbjct: 62 LCRQIRSSGRQMPILLLTGCDSSHEKAIGLDAGADDYVVKPFDEEELVARVRALLRR 118
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L +DD + L L G +V++ ++ ++ +R+ LL+ D+ MP +GIE
Sbjct: 382 KVLAVDDDPQILAILQTLLHPWGLQVITLDDPRQFWETLRDVNPDLLILDVEMPYTNGIE 441
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +L ++F+T + + +SKP +LV + L
Sbjct: 442 LCQVVRNDPQWSELPILFLTVHKDGEIVNQVFSVGADDFVSKPIVGPELVTRIINRLER 500
Score = 97.1 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 4/116 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD +R L L + GY VV+ G A + +++ D++MP M+G E
Sbjct: 1381 VLVCDDDPLIRTELQSLLEQGGYRVVTVATGKEAIASASTQHPDVIVLDLLMPGMNGWET 1440
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E + ++ + + + + +SKP L++ + + +
Sbjct: 1441 MAMLKESTETKHIPIVICSVY--KPTTNNQPSSDFVDWISKPVQESYLLHSLRQAI 1494
Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+ + + E S G A +E LL+ D+++PE DG
Sbjct: 1502 RILIVEDDADLAELFVTLFERHDIETFSAKTGREAIHLSQEVNPDLLILDLILPETDGFA 1561
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRLLTI 120
+ + ++ V+ + + + L+K ++ V LL
Sbjct: 1562 VVDWLQKHQRLCNIPVVVYSAKDLDESERKRLKLGHTEFLTKGRVTTKEFEQRVIELLQR 1621
>gi|88855714|ref|ZP_01130377.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
gi|88815038|gb|EAR24897.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
Length = 230
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R L +L AG+ V + +GA V EE L++ D+++P+M+G
Sbjct: 6 KILIVDDEPNIRDLLTTSLRFAGFAVRAVGSGAQTISAVLEEEPDLIILDVMLPDMNGFG 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++F+T ++KPF L ++V + +L
Sbjct: 66 VTKRLRASGYTSPILFLTAKDDTEDKIMGLTVGGDDYVTKPFSLDEIVARIKAILRR 122
>gi|291533552|emb|CBL06665.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Megamonas hypermegale
ART12/1]
Length = 223
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ DM L L +GY+V S +G +A +K E + L+ DI+MP+M GIE
Sbjct: 2 KILLAEDEKDMSSALTAILQHSGYDVDSVYDGQAAMEKALENVYDCLIFDIMMPKMSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T + + L KPF + +L+ + LT +N
Sbjct: 62 ALKIIRQKGNLSPVIMLTAKSEIDDRITGLDAGADDYLMKPFSVGELLARIRS-LTRRN 119
>gi|315505450|ref|YP_004084337.1| multi-sensor signal transduction histidine kinase [Micromonospora
sp. L5]
gi|315412069|gb|ADU10186.1| multi-sensor signal transduction histidine kinase [Micromonospora
sp. L5]
Length = 1381
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L AG+EV + +G +A D R L+++D++MP +DG++
Sbjct: 631 RVLVADDNADMREYLTRLLRSAGHEVQAVADGRAALDAARAHTPDLVVSDVMMPRLDGLQ 690
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---LL 118
L + V+ ++ A + + L KPF +L+ V L
Sbjct: 691 LVAALRADQRTAGTPVLLLSARAGQEASIEGLEAGADDYLVKPFPAAELLARVRANVELA 750
Query: 119 TIKN 122
++N
Sbjct: 751 RLRN 754
>gi|15613716|ref|NP_242019.1| two-component response regulator [Bacillus halodurans C-125]
gi|10173769|dbj|BAB04872.1| two-component response regulator [Bacillus halodurans C-125]
Length = 232
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD ++R + L G V +G A +++ EE L+L D++MP +DGI+
Sbjct: 7 VLVVDDDKEIREGITIYLKNEGMNVFQAKDGIEALERLNEEDIHLMLLDVMMPRLDGIQT 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++F++ + A ++KPF+ +L+ V L
Sbjct: 67 TLKIREAR-NIPIIFLSAKSEEADKVLGLQVGGDDYVTKPFNPLELIARVKSQLRR 121
>gi|109898155|ref|YP_661410.1| two component AraC family transcriptional regulator
[Pseudoalteromonas atlantica T6c]
gi|109700436|gb|ABG40356.1| two component transcriptional regulator, AraC family
[Pseudoalteromonas atlantica T6c]
Length = 1341
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++R+F+ L Y + NG K +++ D++MP+MDG+
Sbjct: 1098 TVLVIDDNAELRQFIALRLSGY-YRITQAENGEEGLAKAISVLPDVIICDVMMPKMDGLT 1156
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ ++ +A + L+KPF +LV V+ L +
Sbjct: 1157 LMHHLRGNQHTRSIPIILLSAKSAKRDTVEGLQRGADDYLTKPFDTSELVARVDAQLRGR 1216
>gi|95929326|ref|ZP_01312069.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95134442|gb|EAT16098.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 449
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD MRR + L +AGY+V++ +G A R +L++TD+ M M
Sbjct: 1 MSESVLLVDDDASMRRVIEFTLQEAGYQVLTAASGEEALPLFRHHQPALVVTDVRMEGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN----- 115
G ++ + P V+ IT ++ V + L+KPF L V
Sbjct: 61 GYQVLEKVLAESPATLVIIITAYSTVEQAVGAMKSGAYDYLTKPFSGEQLRLAVARAFEY 120
Query: 116 RLLTIKN 122
R L +N
Sbjct: 121 RALRREN 127
>gi|94984303|ref|YP_603667.1| two component transcriptional regulator [Deinococcus geothermalis
DSM 11300]
gi|94554584|gb|ABF44498.1| two component transcriptional regulator, winged helix family
[Deinococcus geothermalis DSM 11300]
Length = 222
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D
Sbjct: 1 MDQRILLIEDNPDITRVVQYELEQAGYRVLTAPDGVTGLTSARENSPDLVILDLGLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ARR + + ++ +T AV + ++KPFH +LV V L
Sbjct: 61 GAEIARRLRK-TSSVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|329956866|ref|ZP_08297434.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328523623|gb|EGF50715.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1474
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R FL +L + Y V++ NG ++ L+++D++MP MDG+E+
Sbjct: 1219 ILVVEDNKELRTFLKNSLSEH-YTVITAANGKEGLQHAIDDLPDLIISDVMMPVMDGLEM 1277
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E + ++ ++ A++ ++KPF L + LL +
Sbjct: 1278 VKQIKENSAICHIPIIILSAKASLDDRIAGLEQGIDDYITKPFSATYLKTRIITLLRQR 1336
>gi|302343346|ref|YP_003807875.1| Fis family transcriptional regulator [Desulfarculus baarsii DSM
2075]
gi|301639959|gb|ADK85281.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfarculus baarsii DSM 2075]
Length = 449
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D+ + L L GY+V + +NG +A E+ L++TD+ MP M
Sbjct: 1 MN-RILVVDDEKNYLVVLEALLRGEGYDVRTADNGQAALRLADEDEPDLVITDMKMPRMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL + PDL V+ +T + V ++ + KPF R+L+ + L +
Sbjct: 60 GIELIQALRVDHPDLPVIVMTAYGTVENAVEAMKLGATDYIIKPFENRELLLTTEKTLRM 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|300866718|ref|ZP_07111402.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300335318|emb|CBN56562.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1199
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L K GYE NG A P L+L DIVMP +DG E+
Sbjct: 13 ILIVDDQPDNLRVLSALLRKRGYECRRAINGQLALRACNSNPPDLILLDIVMPVVDGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E D+ V+F++ V + A A +SKPFH +++ V LT++
Sbjct: 73 CKQLKSGEKTCDIPVIFLSAKGEVFEKVKAFAAGGADYISKPFHSEEVLARVEHQLTMQ 131
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D+ R L L G+E++ +G +K E ++L D+VMP MDG
Sbjct: 969 KRKVLVVDDNQINRDILRNLLEPLGFEIIEAADGKECLNKAVEFKPDVILMDLVMPVMDG 1028
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLR 108
E RR L D+ ++ I+ A D + L KP ++
Sbjct: 1029 FEATRRLRYLPELKDIVLLAISASAFDNTKLDFLLGGSDNFLIKPIEVK 1077
>gi|190573534|ref|YP_001971379.1| putative two-component system, response regulator transcriptional
regulator [Stenotrophomonas maltophilia K279a]
gi|190011456|emb|CAQ45074.1| putative two-component system, response regulator transcriptional
regulatory protein [Stenotrophomonas maltophilia K279a]
Length = 242
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ +DD+D+R L + LG+AGY+V + +G + + E L++ D+ +P DG+
Sbjct: 8 HRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L+KPF R+L+ + +L
Sbjct: 68 TLCRDLRAR-SNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124
>gi|126649989|ref|ZP_01722222.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
gi|126593161|gb|EAZ87123.1| hypothetical protein BB14905_01925 [Bacillus sp. B14905]
Length = 228
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V A + E L + DI+MP +D
Sbjct: 1 MN--ILVVDDEKEIADLIELYLKNENYNVFKYYTAQEALACMEREGLDLAILDIMMPHID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E + V+ +T + + ++KPF +L+ V L
Sbjct: 59 GFTVLQKIRETY-NFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELIARVKAQLRR 117
>gi|23014270|ref|ZP_00054096.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 229
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + L++ L AGY +G A D++R +P L++ DI++P MDG
Sbjct: 5 RKILVVEDEPAIADVLVEYLRHAGYSPSHVADGRVALDEIRRDPPDLVVLDIMLPGMDGT 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + KPF R++V + L
Sbjct: 65 AVCRELR-RFSTIPVIMVTARVEEIDRLLGLEVGADDYICKPFSPREVVARITSLFRR 121
>gi|328949557|ref|YP_004366892.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
gi|328449881|gb|AEB10782.1| two component transcriptional regulator, winged helix family
[Marinithermus hydrothermalis DSM 14884]
Length = 222
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L + L + G+ +G A + R L+L D+++P DG+E+
Sbjct: 6 ILIVEDEPRLAEVLERYLRREGFRTERATDGRRALELWRATRPDLILLDLMVPGPDGLEI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D+ ++ +T A ++KPF R++V V +L
Sbjct: 66 TRTLRK-TSDVPIIMVTARAEETDRLVGLELGADDYVTKPFSPREVVARVKAVLRR 120
>gi|330811323|ref|YP_004355785.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379431|gb|AEA70781.1| Putative response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 227
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + ++
Sbjct: 62 LCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119
>gi|228955968|ref|ZP_04117903.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228803712|gb|EEM50396.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEIHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|262039513|ref|ZP_06012815.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
F0264]
gi|261746494|gb|EEY34031.1| transcriptional regulatory protein PcoR [Leptotrichia goodfellowii
F0264]
Length = 225
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 55/116 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + ++K L Y V C NG A D + + ++ DI++PE++G E
Sbjct: 2 RILVVEDEKSLNEVIVKRLEDEHYGVDWCYNGKDALDNILITEYDAIILDIMLPELNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + D V+F+T ++ L+KPF +L+ + +L
Sbjct: 62 VLKTMRSKNIDTPVLFLTAKDSIEDRVKGLDSGANDYLTKPFAFEELLARIRVMLR 117
>gi|271962875|ref|YP_003337071.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270506050|gb|ACZ84328.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 222
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GY+V +G A ++ L++ D+ +PEMDG+E+
Sbjct: 4 VLLAEDDTSISEPLARALRREGYQVEVSPDGPQALERALSGGIDLIVLDLGLPEMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR V+ +T ++KPF L +L+ V LL
Sbjct: 64 ARRIRAEGHGTPVLILTARVDEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|255034386|ref|YP_003085007.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254947142|gb|ACT91842.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 231
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ EDD + + + + L + +G + + + L+L DI +P M+
Sbjct: 3 MKKTVLIIEDDLRIAQNIYRVLQSENFNADIARDGLTGKKMALDGRYDLVLLDINLPGMN 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R E P L V+ +T + + + + KPF R+LV ++ L +
Sbjct: 63 GFDVCRHIGEFKPLLPVIMLTAYGEIEDKVEGLGNGATDYIVKPFDSRELVARIHAALRL 122
Query: 121 KN 122
+
Sbjct: 123 SD 124
>gi|160932361|ref|ZP_02079752.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
gi|156868963|gb|EDO62335.1| hypothetical protein CLOLEP_01197 [Clostridium leptum DSM 753]
Length = 233
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ ++ + L Y V A + + L + DI++P++
Sbjct: 1 MSEKILIVDDEVEIADLIEVYLKNENYTVFKFYTAMEALECIDTTTLDLAILDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E V+ +T ++KPF ++V V L
Sbjct: 61 GFTLCQKIRERY-TYPVIMLTAKDTETDKITGLTLGADDYITKPFRPLEMVARVKSQLRR 119
>gi|126658533|ref|ZP_01729680.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Cyanothece sp. CCY0110]
gi|126620120|gb|EAZ90842.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Cyanothece sp. CCY0110]
Length = 416
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D + L L +AG ++ NG A +V +P L+L D++MPE+DG
Sbjct: 8 KHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQVANDPPELILLDVLMPEIDGF 67
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ D+ ++F+T + + ++KPF +++ +N L +
Sbjct: 68 ETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFETEEVIARINTHLQL 127
Query: 121 K 121
+
Sbjct: 128 R 128
>gi|29346400|ref|NP_809903.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|253568200|ref|ZP_04845611.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|29338296|gb|AAO76097.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|251842273|gb|EES70353.1| two-component system response regulator [Bacteroides sp. 1_1_6]
Length = 228
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + +P + ++ +T + D + KPF R+L + LL
Sbjct: 63 LTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|56420814|ref|YP_148132.1| two-component response regulator [Geobacillus kaustophilus HTA426]
gi|56380656|dbj|BAD76564.1| two-component response regulator [Geobacillus kaustophilus HTA426]
Length = 241
Score = 146 bits (371), Expect = 7e-34, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +RR L L + Y + +G A +K + ++L D+++P DGIE
Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + +M +T + + KPF R++V V
Sbjct: 69 VCKEIRAQ-KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119
>gi|329936182|ref|ZP_08285975.1| putative two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329304292|gb|EGG48172.1| putative two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|303327856|ref|ZP_07358296.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
3_1_syn3]
gi|302862217|gb|EFL85151.1| phosphate regulon transcriptional regulator PhoB [Desulfovibrio sp.
3_1_syn3]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ Q IL+ ED+ D+R L L + G+ V+ +G + R L++ D+++P +
Sbjct: 1 MSAQHILVVEDESDIRELLRFNLEREGFSVLEAEDGQKGLELARRHLPCLIILDVMLPAL 60
Query: 60 DGIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E++RR + V+ +T + + KPF +R+L+ + +
Sbjct: 61 DGFEVSRRLGGQAETSAIPVLMLTARGEEMDRVVGLSLGADDYVVKPFSVRELMLRIKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|298385740|ref|ZP_06995298.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
gi|298261881|gb|EFI04747.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQAHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + +P + ++ +T + D + KPF R+L + LL
Sbjct: 63 LTKEIRKSNPRIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|300744319|ref|ZP_07073338.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
gi|311112934|ref|YP_003984156.1| response regulator [Rothia dentocariosa ATCC 17931]
gi|300380044|gb|EFJ76608.1| DNA-binding response regulator RegX3 [Rothia dentocariosa M567]
gi|310944428|gb|ADP40722.1| response regulator [Rothia dentocariosa ATCC 17931]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED++ + L LG+ G+ V +NG A E L+L D+++P M
Sbjct: 1 MT-KILLVEDEEALYDPLSFLLGREGFTPVVVDNGLDAVPAFEREDPDLVLLDVMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ + ++ +T + ++KP+ R+L+ + +L
Sbjct: 60 GMEVCKKIRA-SSSVPIIMLTAKDSEIDKVLGLELGADDYVTKPYSSRELMARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 QS 120
>gi|218246642|ref|YP_002372013.1| two component LuxR family transcriptional regulator [Cyanothece sp.
PCC 8801]
gi|257059684|ref|YP_003137572.1| two component LuxR family transcriptional regulator [Cyanothece sp.
PCC 8802]
gi|218167120|gb|ACK65857.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 8801]
gi|256589850|gb|ACV00737.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 8802]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ +KILL +D+ +R + L +G + V +N A++ + +E L+++DI+MP
Sbjct: 1 MSNPEKILLVDDEPGVRESVQAYLEYSGDFNVKVASNANQAWELIEKEIPDLIISDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++DG + + E L V+F+T + LSKPF +L V
Sbjct: 61 QVDGYQFLGKLREDPRYQSLPVVFLTARGMTSDRIQGYHAGCDAYLSKPFDPEELEAIVK 120
Query: 116 RLLTIK 121
LL +
Sbjct: 121 NLLERR 126
>gi|204926728|ref|ZP_03217930.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323393|gb|EDZ08588.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 229
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|119488886|ref|ZP_01621848.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
gi|119455047|gb|EAW36189.1| sensory box histidine kinase [Lyngbya sp. PCC 8106]
Length = 401
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D +D L L + GY+V S NG SA + L+L DI+MP+++G E+
Sbjct: 8 ILIVDDIEDNLLLLTAILTEKGYQVQSAVNGLSALSLAVQNRPDLILLDIMMPDINGYEV 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ ++FI+ V + + L+KP + +L++ V L++
Sbjct: 68 CHRLKADPRTKDIPIIFISALGEVFDQVKAFSIGAVDYLTKPIRIPELLSRVKTHLSL 125
>gi|94971080|ref|YP_593128.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94553130|gb|ABF43054.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +++ L + AG+EVV +GA+A + +L D+ +P G +
Sbjct: 3 RILVIEDDATVQKALRRTFESAGFEVVVAPDGATAVQTFQATSPRAVLLDLRLPGKSGQD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P++ ++ ++ + V ++KPF R+L+ V L
Sbjct: 63 ICREIRGFSPNVPILVLSAASDVVDKVLLLELGADDYVTKPFSPRELLARVRTALRR 119
>gi|26987013|ref|NP_742438.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|24981631|gb|AAN65902.1|AE016218_4 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
Length = 239
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D
Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYNVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L
Sbjct: 61 GLSLCRQL-QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119
>gi|331268818|ref|YP_004395310.1| winged helix family two component transcriptional regulator
[Clostridium botulinum BKT015925]
gi|329125368|gb|AEB75313.1| two component transcriptional regulator, winged helix family
[Clostridium botulinum BKT015925]
Length = 232
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R + L G +V +G A ++EE L+L DI+MP+MDGI+
Sbjct: 6 ILVVDDDKEIREAIKIYLKNEGLKVYEAQDGIDALMILQEEEIHLILMDIMMPKMDGIKT 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ ++ ++ + ++KPF+ +L+ V L
Sbjct: 66 TFKIREK-KDIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 120
>gi|315028795|gb|EFT40727.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
Length = 258
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD ++ L K L E + G ++ + + L++ DI+MP MD
Sbjct: 28 MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 87
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + L V+ +T + L+KPF + + + V+ L+
Sbjct: 88 GFQVLEKIRETNR-LPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRR 146
>gi|299536837|ref|ZP_07050144.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
gi|298727661|gb|EFI68229.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + L G+ V ++G + + + L++ DI++P + G
Sbjct: 2 KKILLIEDEVSIAELQRDYLEINGFTVDIQHHGEDGLQQALKGNYDLIILDIMLPGISGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ + ++ ++F++ ++KPF +LV V L+
Sbjct: 62 DICKQIRAVH-NMPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 118
>gi|206891042|ref|YP_002248007.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
DSM 11347]
gi|206742980|gb|ACI22037.1| DNA-binding response regulator [Thermodesulfovibrio yellowstonii
DSM 11347]
Length = 229
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ ED+ ++ + +L K Y++ +G +A K+RE + L++ D+++P +
Sbjct: 1 MSKKILIVEDEKEIAELIAYSLKKEKYDISIALDGETALKKLRETVYDLVILDLMLPGIQ 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + ++ +T + ++KPF R+L+ V ++
Sbjct: 61 GLEICKIIRNNSNMQKTGIIIVTAKSEEFDKITGLETGADDYITKPFSPRELIARVKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|161075795|gb|ABX56645.1| DNA binding copper response regulator [Methylacidiphilum infernorum
V4]
Length = 223
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RF+ +AL + G+ V C+ G A + P+ + DI++P DGI
Sbjct: 2 RVLVVEDELKIARFISRALEEEGFTVDCCSRGDEALLMMLATPYDAAVLDIMLPGPDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E L ++ ++ + + L KPF + +LV + L+
Sbjct: 62 VLRSLRERGISLPILLLSARSETRDKIEGLNSGADDYLPKPFSMDELVARLRALIRR 118
>gi|17549417|ref|NP_522757.1| two component response regulator transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|17431670|emb|CAD18347.1| probable two component response regulator transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 245
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|300214840|gb|ADJ79256.1| Alkaline phosphatase synthesis two-component response regulator
phoP [Lactobacillus salivarius CECT 5713]
Length = 233
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + L L KAGYEV + NNG A D+ + ++ D+++P +DGIE
Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T L+KPF R++V + + +
Sbjct: 63 VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAV-KRR 119
>gi|299145538|ref|ZP_07038606.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
gi|298516029|gb|EFI39910.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L+ L + GY+ + +G + F L+++DIV+P+MDG E
Sbjct: 3 TILIIEDEPRVASLLMNGLEENGYQTMVAYDGLMGLRLFQTHTFDLVISDIVLPKMDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ +P++ ++ +T + D + KPF R+L + LL
Sbjct: 63 LAKEIRRTNPNIPILMLTALGSTNDKLDGFDAGADDYMVKPFDFRELNARIKVLLKR 119
>gi|228920706|ref|ZP_04084047.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228952377|ref|ZP_04114463.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228807294|gb|EEM53827.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|228838924|gb|EEM84224.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 232
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 4 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 63 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122
>gi|160938310|ref|ZP_02085665.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
BAA-613]
gi|158438683|gb|EDP16440.1| hypothetical protein CLOBOL_03206 [Clostridium bolteae ATCC
BAA-613]
Length = 235
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + +L + G EV +G A + ++ + ++L D+++P+ DG E
Sbjct: 3 RVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIELAKKTEYDIVLLDVMLPKYDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D+ ++ +T +SKPF++ ++ + ++
Sbjct: 63 VCQAIRE-FSDMPIIMLTAKGGDMDKILGLEYGADDYISKPFNILEVKARIKAIIRR 118
>gi|146306182|ref|YP_001186647.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
gi|145574383|gb|ABP83915.1| two component transcriptional regulator, winged helix family
[Pseudomonas mendocina ymp]
Length = 243
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +DD ++R L L +AG+ V + +G + EEP L++ D+++P+ DG
Sbjct: 6 KSILLVDDDQEIRELLDTYLSRAGFAVRAVADGEGLRAALVEEPADLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ +T + A L KPF R+L+ + LL
Sbjct: 66 SLCRWIREHQRFAAVPVIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125
>gi|110833027|ref|YP_691886.1| phosphate regulon transcriptional regulatory protein phoB
[Alcanivorax borkumensis SK2]
gi|110646138|emb|CAL15614.1| Phosphate regulon transcriptional regulatory protein phoB
[Alcanivorax borkumensis SK2]
Length = 234
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ +R + AL A ++V+ N ++ + +E L+L D ++P +
Sbjct: 1 MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR E ++ ++ +T + ++KPF R+L++ + +
Sbjct: 61 TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|300787465|ref|YP_003767756.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299796979|gb|ADJ47354.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++ +D+ ++ L + L GY V +GA+ + VR E +L D+ MP + G+E
Sbjct: 2 HLVIVDDETAVQDSLSRTLRFEGYTVSVAGDGAAGLNLVRAEAPDGVLLDVTMPVLGGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T V L KPF L++L+ V LL
Sbjct: 62 VCRVLRAEGNTVPVLMLTARTGVTDRVAGLDAGADDYLVKPFALQELLARVRALLRR 118
>gi|228908952|ref|ZP_04072782.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228850674|gb|EEM95498.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEYYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|228997560|ref|ZP_04157173.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
gi|228762188|gb|EEM11121.1| Sensor histidine kinase [Bacillus mycoides Rock3-17]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 2 MERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLHQIDLMILDIMMPKRN 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E + + ++ ++ A + KPF+ +L+ V LL
Sbjct: 62 GLEVCQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|262193874|ref|YP_003265083.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
gi|262077221|gb|ACY13190.1| two component transcriptional regulator, winged helix family
[Haliangium ochraceum DSM 14365]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ EDD+ + L L AGY+ ++G A ++ E L+L DI +P
Sbjct: 1 MSQHKILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GI + + + V+ ++ + ++KPF L +L+ V +L
Sbjct: 61 NGIGVLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKPFGLAELMARVAAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|195953525|ref|YP_002121815.1| two component transcriptional regulator, winged helix family
[Hydrogenobaculum sp. Y04AAS1]
gi|195933137|gb|ACG57837.1| two component transcriptional regulator, winged helix family
[Hydrogenobaculum sp. Y04AAS1]
Length = 225
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K L+ EDD+ + L K G+EV +G A K + + +++ D+V+P++D
Sbjct: 1 MSLKALIVEDDELLLETLEKGFRHEGFEVDIAKDGFQALQKAKTNSYDIIILDVVIPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ L ++ ++ +T + + + ++KPF ++L+ V +L
Sbjct: 61 GVKVCKQLR-LQSEIPIIMLTAKSQLEDKLEGLEAGADDYITKPFSFKELIMRVKTVLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|83642976|ref|YP_431411.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83631019|gb|ABC26986.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L + GY+ +G A +++R E L+L D+++P +DG+ +
Sbjct: 6 ILIVEDEPKLASLLKDYLQQEGYQCDIIGDGQQALERIRAEAPDLILLDLMLPGLDGLSV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R A D ++ +T + KPF R++V V +L
Sbjct: 66 CREARRFT-DAPIIMVTARVEEIDRLLGLELGADDYVCKPFSPREVVARVKAILRR 120
>gi|15805807|ref|NP_294505.1| response regulator [Deinococcus radiodurans R1]
gi|6458493|gb|AAF10359.1|AE001933_3 response regulator, OmpR/PhoB family [Deinococcus radiodurans R1]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+ILL ED+ D+ R + L +AGY V++ +G + RE L++ D+ +P+ D
Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQAGYRVITAPDGITGLTSARENTPDLVILDLGLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ARR + + ++ +T A+ + ++KPFH +LV V L
Sbjct: 61 GAEVARRLRK-TSSVPIIILTAMDAIDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|310641893|ref|YP_003946651.1| alkaline phosphatase synthesis transcriptional regulatory protein
phop [Paenibacillus polymyxa SC2]
gi|309246843|gb|ADO56410.1| Alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus polymyxa SC2]
Length = 237
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +L+ +D++ + R L L GY V G +K + +++ D+++PE++
Sbjct: 1 MDKSVLVIDDEEKISRLLQLELSHEGYVVEIAQTGREGLEKALAHTWDIIILDVMLPEIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ ++D ++ +T ++KPF + +L+ + +
Sbjct: 61 GVEVLKQIRKVDNHTPIIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRN 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|265752180|ref|ZP_06087973.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263236972|gb|EEZ22442.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 1441
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D++++R F++ L K Y ++ NG + +R E L+L+D++MP MDGIE
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + ++ +A+ ++KPF L ++ LL +
Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQR 1293
>gi|229591084|ref|YP_002873203.1| oxidative stress related two component system, transcriptional
regulator [Pseudomonas fluorescens SBW25]
gi|229362950|emb|CAY49878.1| oxidative stress related two component system, transcriptional
regulator [Pseudomonas fluorescens SBW25]
Length = 247
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D +R L L + ++V + + A + ++ + F +++ D+++P+ DG E
Sbjct: 11 RVLVVDDHRKIREPLATYLRRHTFDVRTAEDAAGMWQLLKTQAFDVVVLDVLLPDGDGFE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + V+ +T A ++KPF R+LV ++ +L ++
Sbjct: 71 LCNQLHRR-SNTPVILLTARDNAADRVRGLDLGADDYVTKPFEPRELVARIHSVLRRQS 128
>gi|258514614|ref|YP_003190836.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257778319|gb|ACV62213.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD + + L GY++ +NG A + + L++ DI+MP+MD
Sbjct: 1 MN--ILVCDDDKTIVEAIEIYLENEGYKIFKASNGIEALELIEGNEIHLIIMDIMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + E ++ V+ ++ + ++KPF+ +L+ + L
Sbjct: 59 GLRATMKIREE-KNIPVIMLSAKSEDTDKIIGLNLGADDYITKPFNPLELIARIKSQLRR 117
>gi|224540766|ref|ZP_03681305.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
14838]
gi|224517633|gb|EEF86738.1| hypothetical protein BACCELL_05680 [Bacteroides cellulosilyticus DSM
14838]
Length = 1377
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ EDD+++R ++ + L Y C+NG A + L+++D++MPEMDG+
Sbjct: 1135 RHVLVVEDDEEIRHYICRELSNDFYM-TECSNGKEALASILSHTPDLIISDVMMPEMDGL 1193
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + L ++ +T + N + L KPF + L V L+
Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNLIRR 1253
Query: 121 K 121
+
Sbjct: 1254 R 1254
>gi|88802016|ref|ZP_01117544.1| response regulator DrrA [Polaribacter irgensii 23-P]
gi|88782674|gb|EAR13851.1| response regulator DrrA [Polaribacter irgensii 23-P]
Length = 232
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ KILL +D+ D+ + L GY++ + NG A ++ L+L DI+MP
Sbjct: 1 MNKSEIKILLVDDEPDIIEIVGYNLRNEGYQIFTATNGQEAIKSAKKNIPHLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + ++ ++ + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACEKIRKISSLENVLIAFLTARGEDYSQVAGFEAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 SLLRR 125
>gi|127514186|ref|YP_001095383.1| two component heavy metal response transcriptional regulator
[Shewanella loihica PV-4]
gi|126639481|gb|ABO25124.1| two component heavy metal response transcriptional regulator,
winged helix family [Shewanella loihica PV-4]
Length = 238
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + +L K L +AGY + C NG Y E F L++ D+++P+M+G +
Sbjct: 15 RILVIEDEIKIGDYLKKGLEEAGYTISLCRNGLDGYHCAISEHFDLIILDVMLPDMNGWQ 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ VMF+T ++ + L KPF +L+ V LL
Sbjct: 75 ILEKIRLNNSDIPVMFLTAKDSLEDKINGLESGADDYLVKPFAFAELLARVKTLLRR 131
>gi|319788127|ref|YP_004147602.1| two component transcriptional regulator, winged helix family
[Pseudoxanthomonas suwonensis 11-1]
gi|317466639|gb|ADV28371.1| two component transcriptional regulator, winged helix family
[Pseudoxanthomonas suwonensis 11-1]
Length = 227
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+E
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVAIIDLGLPKMSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + + V+ +T ++ + L KPFH+ +L+ +N L+
Sbjct: 62 LIKALRDEGKNFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARLNALVRR 118
>gi|296134131|ref|YP_003641378.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296032709|gb|ADG83477.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 224
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+A+D+ MR+ + L K GY ++ +G A D L++ D++MP DG
Sbjct: 5 KILIADDEARMRKLVADFLKKEGYAIIEAADGRQALDLFYGNNDIDLIILDVMMPGYDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T + + ++KPF L+ L + LL
Sbjct: 65 TVCREIRK-SSQVPIIMLTARGEESDELFGFDLGADEYIAKPFSLKILAARIQALLRR 121
>gi|229015664|ref|ZP_04172650.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229021856|ref|ZP_04178428.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228739444|gb|EEL89868.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228745636|gb|EEL95652.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 233
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKIDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|188026544|ref|ZP_02962517.2| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
gi|188019362|gb|EDU57402.1| hypothetical protein PROSTU_04645 [Providencia stuartii ATCC 25827]
Length = 260
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ + ++ SA ++ + L+L D ++P
Sbjct: 32 MARRILVVEDEAPIREMVCFVLEQNGFQSIEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 91
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ + D+ VM +T L KPF ++LV V +L
Sbjct: 92 GIQVIKHMKRDSDTRDIPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELVARVKAIL 151
Query: 119 TI 120
Sbjct: 152 RR 153
>gi|147678593|ref|YP_001212808.1| response regulator [Pelotomaculum thermopropionicum SI]
gi|146274690|dbj|BAF60439.1| response regulator [Pelotomaculum thermopropionicum SI]
Length = 453
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D++ +R+ L L G++V+ NG A +K+ +L DI MPE+D
Sbjct: 1 MMSKVLVVDDEESVRQMLKDVLEDDGHQVMLAENGREALEKITVRHPDAVLLDIRMPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + ++ +T F + + + KPF++ +L+ V + + +
Sbjct: 61 GLAVLDIVRREGSTVPIILMTAFGITDMAIQAIQTGAYDYIIKPFNIDELLLTVKKAVNM 120
Query: 121 KN 122
++
Sbjct: 121 QD 122
>gi|257867512|ref|ZP_05647165.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257873841|ref|ZP_05653494.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|18460982|gb|AAK53981.1| VanRc-2 [Enterococcus casseliflavus]
gi|18476141|gb|AAK58492.1| response regulator VanRc3 [Enterococcus casseliflavus]
gi|257801568|gb|EEV30498.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257808005|gb|EEV36827.1| transcriptional regulator [Enterococcus casseliflavus EC10]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +D+ ++ + L G++V +G SA + +E + + D+++P++D
Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQQIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|116627234|ref|YP_819853.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9]
gi|116100511|gb|ABJ65657.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Streptococcus thermophilus LMD-9]
Length = 229
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++ RF+ L GY+VV+ +NG + E+ F L+L D+++PEMD
Sbjct: 1 MSKRILIVEDERNLARFVSLELQHEGYDVVTADNGREGLEMALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + D +M +T ++ + + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QQEKDTYIMMMTARDSIMDIVAGLDRGADEYIIKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|67920570|ref|ZP_00514090.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
gi|67858054|gb|EAM53293.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Crocosphaera watsonii WH 8501]
Length = 246
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDDD +R + L AGY++ +G + L++ D+++P++DG
Sbjct: 3 RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ V+ ++ + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDDRTSDIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121
>gi|318056730|ref|ZP_07975453.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|318075364|ref|ZP_07982696.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 225
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAEDD + L +AL + GYEV +G +A + + L++ D+ +P MDG+E
Sbjct: 3 RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMQGAIDLVVLDLGLPGMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 63 VARRLRAEGLPVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|297530122|ref|YP_003671397.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297253374|gb|ADI26820.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D++ M L L GY V +GA A D +R L+L D++MPE+DG E
Sbjct: 3 TLLLVDDEERMLDLLELYLAPNGYRCVKRRSGAEAIDYLRRHHADLVLLDVMMPELDGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ +M +T A ++KPF +L+ + +L
Sbjct: 63 TCRRIRS-FSNVPIMMVTARDETADIVQGLKIGADDYVAKPFDEAELLARIEAVLRR 118
>gi|229127407|ref|ZP_04256401.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-Cer4]
gi|229144616|ref|ZP_04273018.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST24]
gi|228638856|gb|EEK95284.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-ST24]
gi|228656026|gb|EEL11870.1| Two component transcriptional regulator, winged helix [Bacillus
cereus BDRD-Cer4]
Length = 232
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 4 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 63 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGMGADDYIAKPFSPVVLTARIQSLLRR 122
>gi|75907998|ref|YP_322294.1| metal dependent phosphohydrolase, HD region with response regulator
receiver modulation [Anabaena variabilis ATCC 29413]
gi|75701723|gb|ABA21399.1| Metal dependent phosphohydrolase, HD region with Response Regulator
Receiver modulation [Anabaena variabilis ATCC 29413]
Length = 414
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D R LG GY V+ ++GA+A V ++ L+L D++MPEMDG
Sbjct: 93 SPKILVVDDHSASRMTAAALLGMEGYAVIEADSGATAIKLVGQQQPDLILLDVMMPEMDG 152
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + E + V+FIT LSKPF +LV V L+
Sbjct: 153 FEVCQLLKQDEHTRLIPVIFITALNDRRSRIRGIEVGADDFLSKPFDRVELVARVKSLVQ 212
Query: 120 IK 121
K
Sbjct: 213 QK 214
>gi|328952445|ref|YP_004369779.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
gi|328452769|gb|AEB08598.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
Length = 463
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L L G+EV++ +G +A V EE L+ DI +P MD
Sbjct: 1 MARTILVVDDEPPILQTLSGILQDEGFEVLTAQDGETALKVVEEETPDLVFLDIALPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E P V+ I+ F +V + + KP H ++ V L +
Sbjct: 61 GLEVLRHLKEQQPLTPVVMISAFGSVENAVKATRWGAYDFIEKPPHADKIIVTVRNALEM 120
>gi|294499648|ref|YP_003563348.1| two-component response regulator PhoP [Bacillus megaterium QM
B1551]
gi|294349585|gb|ADE69914.1| two-component response regulator PhoP [Bacillus megaterium QM
B1551]
Length = 230
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ +D+ + + A + GY V + ++G A +KV +++ D++MP++
Sbjct: 1 MNKRILVVDDEKSIATAVSYAFKREGYIVDTASDGEEALEKVTSFRPDVMILDVMMPKLT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E + ++ +T + ++KPF +R+LV L+
Sbjct: 61 GYEVCRKL-ENRRGMGIILLTVKNDIVDKVLGLELGADDYMTKPFDVRELVARAKALVRR 119
>gi|255767758|ref|NP_391202.2| two-component response regulator YvrH involved in cell wall
processes YvrG [Bacillus subtilis subsp. subtilis str.
168]
gi|321312870|ref|YP_004205157.1| two-component response regulator YvrH involved in cell wall
processes (YvrG) [Bacillus subtilis BSn5]
gi|251757511|sp|P94504|YVRH_BACSU RecName: Full=Transcriptional regulatory protein yvrH
gi|225185386|emb|CAB15312.2| two-component response regulator YvrH involved in cell wall
processes [YvrG] [Bacillus subtilis subsp. subtilis str.
168]
gi|320019144|gb|ADV94130.1| two-component response regulator YvrH involved in cell wall
processes (YvrG) [Bacillus subtilis BSn5]
Length = 237
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY ++ + A V+ L++ D++M M
Sbjct: 3 NASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 63 GFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 121
>gi|206976692|ref|ZP_03237597.1| regulatory protein VanR [Bacillus cereus H3081.97]
gi|217962576|ref|YP_002341148.1| regulatory protein VanR [Bacillus cereus AH187]
gi|222098545|ref|YP_002532603.1| response regulator protein [Bacillus cereus Q1]
gi|229141828|ref|ZP_04270356.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|206745178|gb|EDZ56580.1| regulatory protein VanR [Bacillus cereus H3081.97]
gi|217062992|gb|ACJ77242.1| regulatory protein VanR [Bacillus cereus AH187]
gi|221242604|gb|ACM15314.1| response regulator protein [Bacillus cereus Q1]
gi|228641664|gb|EEK97967.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 234
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ I++ +D+ ++R + L GY V+ +G + +++ L++ DI+MP++
Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAEDGEEGLELLKKNEVHLIVLDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|134298200|ref|YP_001111696.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134050900|gb|ABO48871.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 227
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M Q +ILL +D+ ++ +FL L G+EV + +G SA +++ +++ D++M
Sbjct: 1 MKQLKGIRILLVDDESNILQFLEIGLQNEGFEVQTAQDGMSAITLMKQFQPHVVILDVMM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG E+ R + + ++ V+ +T V + KPF +L+ +
Sbjct: 61 PGMDGFEVCRMLKKTE-NVAVIMLTARDEVDDRVKGLNLGADDYMVKPFSFEELLARIYA 119
Query: 117 LLTIKN 122
I+N
Sbjct: 120 --RIRN 123
>gi|325523281|gb|EGD01637.1| two component transcriptional regulator [Burkholderia sp. TJI49]
Length = 240
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|323359178|ref|YP_004225574.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323275549|dbj|BAJ75694.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 227
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ L L + GYEV +GA A + ++L D+++P M G E
Sbjct: 3 RVLIVEDEPDLADPLAYLLRREGYEVEIAEDGALALSAFHDRGADIVLLDLMLPGMPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ L + ++ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCRQLR-LSSHVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARMRAVLRRR 119
>gi|313679062|ref|YP_004056801.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313151777|gb|ADR35628.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 228
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ + L + L G+ G A + R L+L D+++PE+ G+
Sbjct: 7 KRILVVEDEARIADVLERYLRAEGFVTERAATGKRALELWRAFRPDLILLDLMLPEIGGL 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+AR D+ ++ +T A ++KPF R++V V +L
Sbjct: 67 EVARTIRAQ-SDVPILMVTAKAEEVDRLVGLELGADDYITKPFSPREVVARVRAVLRR 123
>gi|312897331|ref|ZP_07756757.1| response regulator receiver domain protein [Megasphaera
micronuciformis F0359]
gi|310621549|gb|EFQ05083.1| response regulator receiver domain protein [Megasphaera
micronuciformis F0359]
Length = 224
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ + L +GYE ++G A + + ++ DI+MP DGI
Sbjct: 2 RLLLAEDEKELSTAVATILNASGYETDIVSDGVQAVEAAERNSYDCMVFDIMMPGKDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E V+ +T + V L+KPF +++L+ + + T +N
Sbjct: 62 ALSEIREKGDVTPVIMLTAKSEVDDRITGLDAGADDYLTKPFAVKELLARIRSV-TRRN 119
>gi|300867967|ref|ZP_07112606.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
gi|300333988|emb|CBN57784.1| putative Histidine kinase [Oscillatoria sp. PCC 6506]
Length = 1102
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GY+V + G A + L+L DI+MPEMDG E+
Sbjct: 13 ILIVDDMVDNLRLLSDLLTEQGYKVRGVSKGTMALKAAKSFSPDLILLDIMMPEMDGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D+ ++FI+ A + A ++KPF + +++ V L ++
Sbjct: 73 CQHLKAAENTCDIPIIFISALNDAADQLKAFAVGGVDYITKPFRIEEILARVKNHLRLR 131
Score = 128 bits (323), Expect = 3e-28, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAED++ +++ L GY V + NG A RE +L+L DI MP MDG+E
Sbjct: 979 ILLAEDNEANISTIVEYLEAVGYRVATALNGVEAIQMARELKPNLVLMDIQMPAMDGLEA 1038
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L ++ +T A + L+KP L+ LV + L
Sbjct: 1039 TRQLRADVEFVQLPIIALTSLAMPGDREKCLEVGVNEYLAKPVSLKKLVEAIAFQLDR 1096
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 16/116 (13%), Positives = 41/116 (35%), Gaps = 6/116 (5%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNN-GASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED + L + G + + G + + ++ D+ +P+ G +
Sbjct: 845 VLIVEDSAPAAEQIAHYLAELGINNSAIYSLGTGIVQEAIQINPDAIILDLQLPDRSGWD 904
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ + ++ ++ ++ S A + L KPF + +L
Sbjct: 905 VLAQLKAEPRTQNIPILIVSVADEP---VRSPAASVYEYLVKPFSRHQFQLALRKL 957
>gi|228988485|ref|ZP_04148575.1| DNA-binding response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228771253|gb|EEM19729.1| DNA-binding response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 223
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E ++L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALEKWNEG-PNVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|254431718|ref|ZP_05045421.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
gi|197626171|gb|EDY38730.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
Length = 234
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + RF+ + L +AGY V S +G + + L++ D+++PE+DG+
Sbjct: 2 RILVVEDDAGILRFIRQGLTEAGYVVDSAADGRRGVECALTSDYDLIVLDVLLPELDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ V+ +T AV L KPF +L+ + L+
Sbjct: 62 VLRQLRGQGLQTPVLLLTALDAVQDRVQGLNAGADDYLVKPFDFTELLARLRALMRR 118
>gi|172036545|ref|YP_001803046.1| two component transcriptional regulator [Cyanothece sp. ATCC 51142]
gi|171697999|gb|ACB50980.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. ATCC 51142]
Length = 225
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ ++ L L GYEV ++G Y+ + + LL+ D ++P G+
Sbjct: 2 KILLVDDEAELTEPLYHILSHEGYEVDVADDGQKGYELALQNTYDLLILDWMLPRKPGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T + L KPF LR+L+ V LL
Sbjct: 62 ICQELRSQGKNAPVLFLTAKDTLDDRVIGLDAGADDYLVKPFELRELMARVRALLRR 118
>gi|158421790|ref|YP_001523082.1| response regulator [Azorhizobium caulinodans ORS 571]
gi|158328679|dbj|BAF86164.1| response regulator [Azorhizobium caulinodans ORS 571]
Length = 245
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++R L LG+ GY+ +G + + L++ DI++P DG+
Sbjct: 9 TLLIVEDDREIRSLLADFLGREGYDTRLAADGRAMDAILAGIRPDLVILDIMLPGEDGLS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D+ V+ +T L KPF+ R+L+ + +L
Sbjct: 69 LCRRLRAQG-DVPVLMLTAKGDEVDRIVGLEVGADDYLVKPFNPRELLARIRAILRR 124
>gi|95931140|ref|ZP_01313865.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95132830|gb|EAT14504.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 454
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L G++V + +GA+A D V EE L+L DI MP MDGI
Sbjct: 2 KHILVVDDERNIRESITGILQDEGFQVTTSCDGATALDAVTEEKPDLVLLDIWMPGMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + DL+V+ ++G A + + + KP L L+ ++ L +
Sbjct: 62 ETLTQIRNQYDDLQVIMMSGHATIETAVTATKLGAYDFIEKPLSLEKLLVCIHNALKV 119
>gi|239942340|ref|ZP_04694277.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRSR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|229095233|ref|ZP_04226225.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|228688092|gb|EEL41978.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 223
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|221311269|ref|ZP_03593116.1| hypothetical protein Bsubs1_18031 [Bacillus subtilis subsp.
subtilis str. 168]
gi|291485812|dbj|BAI86887.1| hypothetical protein BSNT_04948 [Bacillus subtilis subsp. natto
BEST195]
Length = 248
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY ++ + A V+ L++ D++M M
Sbjct: 14 NASILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMS 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 74 GFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132
>gi|196045036|ref|ZP_03112269.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225863840|ref|YP_002749218.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|196024038|gb|EDX62712.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|225786425|gb|ACO26642.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 232
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MDGIEL
Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|148272229|ref|YP_001221790.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147830159|emb|CAN01088.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L G+E C +G A + L+L D+++P +D
Sbjct: 1 MTARILVVDDDTALAEMIGIVLRTEGFEPSFCGDGGQALAAFHDAKPDLVLLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ + ++ +T + A + KPF+ ++LV + L
Sbjct: 61 GIQVCDLIRAE-SGVPIIMLTAKSDTADVVKGLESGADDYIVKPFNPKELVARIRTRLR 118
>gi|104779513|ref|YP_606011.1| osmolarity response regulator [Pseudomonas entomophila L48]
gi|95108500|emb|CAK13194.1| two-component response regulator OpmR [Pseudomonas entomophila L48]
Length = 246
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L + G+ V + N + E F+L++ D+++P DG+
Sbjct: 12 KILIVDDDPGLSSLLDRFFTSKGFRVRTVPNVEQMDRLLAREVFNLVVLDLMLPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + ++ +T L+KPF+ +LV V +L +
Sbjct: 72 ACKRLRASNNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELVARVKAVLRRQ 129
>gi|1729783|emb|CAA70931.1| colR [Pseudomonas fluorescens]
Length = 227
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ L LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANLADYLGLKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + ++
Sbjct: 62 LCKRLREDARLDTPVIMLTARDQLDDRLQGFKSGADDYLIKPFALSELAARIEAVMRR 119
>gi|30250065|ref|NP_842135.1| response regulator PhoB [Nitrosomonas europaea ATCC 19718]
gi|30139172|emb|CAD86042.1| possible phoB; Response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding [Nitrosomonas
europaea ATCC 19718]
Length = 240
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ ++ + L AGY V N+ A V E L+L D ++P
Sbjct: 1 MSATVLVVEDESAIQELIAYNLRNAGYTAVCTNSAEQAAAMVNEVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIELAR + V+ +T ++KPF R+L+ + +L
Sbjct: 61 GIELARSLRRDPRTKPIPVIMLTARVDERDKVIGLETGADDYVTKPFSPRELIARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|301059812|ref|ZP_07200706.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [delta proteobacterium NaphS2]
gi|300446138|gb|EFK10009.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [delta proteobacterium NaphS2]
Length = 246
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L L GY+V +G SA + L++ DI++PE+DG+ +
Sbjct: 8 ILVVEDEAHLAEGLKLNLALKGYDVRIAMDGTSALQTWEQWRPDLIVLDIMLPEIDGLSV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D + ++ ++ L+KPF+L + + V RLLT
Sbjct: 68 LRKIRLEDERIPILILSARGDPDDRVKGFTYGVDDYLAKPFNLDEFLLRVKRLLTR 123
>gi|284006387|emb|CBA71623.1| two-component system, OmpR family, phosphate regulon response
regulator [Arsenophonus nasoniae]
Length = 234
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ V ++ SA ++ E +L+L D ++P
Sbjct: 6 MVRRILVVEDETAIREMVCFVLEQNGFQTVEADDYDSAIAQLIEPYPALILLDWMIPGGS 65
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L +L ++ +M +T L+KPF ++L+ VN +L
Sbjct: 66 GIQLIAHMKRDQLTRNIPIMMLTARGEEEDRVRGLEIGADDYLTKPFSPKELIARVNAIL 125
Query: 119 TI 120
Sbjct: 126 RR 127
>gi|304317403|ref|YP_003852548.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778905|gb|ADL69464.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 225
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + L KAL + GY V NG + + + +++ DI++PE+DGI+
Sbjct: 2 RILVVDDEPYLTDLLNKALKEEGYSVDIAQNGIDGMECAKMNVYDVIILDIMLPEIDGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ + ++ +T A+ ++KPF L +L + LL +
Sbjct: 62 ILKNLRNMNINTPILMLTAKDALDDKVKGLDTGADDYMTKPFELSELTARIRALLRRE 119
>gi|254507777|ref|ZP_05119908.1| response regulator [Vibrio parahaemolyticus 16]
gi|219549302|gb|EED26296.1| response regulator [Vibrio parahaemolyticus 16]
Length = 240
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-YDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ +DD ++R L + L K+GY V + +G + L+L D+++P
Sbjct: 1 MSAKILVVDDDQEIRELLDEYLTKSGYLVDTVADGEQLKLHLEQTGYPELVLLDVMLPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L + + ++ +T + ++KPF+ R LV + +L
Sbjct: 61 DGFTLCQYIRRE-SSVPIIMLTAVSDETDQIIGLEIGADDYIAKPFNPRQLVARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|190570797|ref|YP_001975155.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|213019676|ref|ZP_03335481.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|190357069|emb|CAQ54466.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|212994717|gb|EEB55360.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 458
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D + L L Y V+ +G A D V E+ ++L D++MP+M
Sbjct: 1 MTAKILVVDDIPSNVKLLEAQLKAEYYTVIVAYDGEEAIDLVAEQQPDIILLDVMMPKMS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ ++ L + ++ +T + L+KP L + L+
Sbjct: 61 GFEVCKKLKNDPLTTYIPIIMVTALHDTHDRVEGINAGADDFLTKPIDETALSARIKSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 70.9 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 44/119 (36%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ++D + L + + ++ A ++ + L+++D+ + DG+ L
Sbjct: 159 ILVVDEDTFQAEQIHNVLKQRFRSIKILHDPKEALKVGIKDNYDLIISDMQFSKTDGLRL 218
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++ + + L+ P +L+ VN + K
Sbjct: 219 CSKFRSKVETRYTPILILSEDYDKSNLVKALDVGANDYLTVPLDESELIARVNLQVKRK 277
>gi|153872512|ref|ZP_02001384.1| adenylate cyclase [Beggiatoa sp. PS]
gi|152071021|gb|EDN68615.1| adenylate cyclase [Beggiatoa sp. PS]
Length = 681
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED R L L K + V NG SA + V+++ L+L DI +P ++G E+
Sbjct: 553 ILLVEDSALNARLLSFLLTKNAFNVFVAKNGNSALEMVKKQHPHLILLDINLPGINGFEI 612
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R D+ V+F++ + ++KPF +++ + L + +
Sbjct: 613 CKRLKSNTHTQDIPVIFMSAYTDTLDKVKGFELGAVDYITKPFQQEEVLARIRTHLKLSH 672
Score = 136 bits (344), Expect = 1e-30, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGIE 63
++ +D+ R+ L+ L Y+ + +G A + V E L+L DI+MP G +
Sbjct: 1 MIVDDEPVNRQVLVNHLSLQNYKTIQATDGQEALNLVLEGEIKPDLILLDIMMPYKTGYD 60
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ ++ + P +L ++ +T V+ L+KP +L+ + L
Sbjct: 61 VTQKIRKKWPADELPIILLTAKNQVSDLVVGLEMGANDYLTKPVSKDELLARIKTHL 117
>gi|153853122|ref|ZP_01994531.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
gi|149753908|gb|EDM63839.1| hypothetical protein DORLON_00516 [Dorea longicatena DSM 13814]
Length = 227
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ + + K+L AGYEV +C +G A + + E + L++ D+ +P MD
Sbjct: 1 MILRLLIVEDEKQICDAVAKSLYDAGYEVDTCYDGEEALEYILTENYDLIVLDLNLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + KV+ ++ +A + + KPFHL++L + L
Sbjct: 61 GMEILKELRQSNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|253988926|ref|YP_003040282.1| two-component response regulator [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253780376|emb|CAQ83537.1| two-component response regulator [Photorhabdus asymbiotica]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL G+ V ++G A ++ E ++LL+ D+ +P +DG+
Sbjct: 2 RLLLVEDHPELLHWLQKALSSTGFAVDVASDGIVADQLLQTENYALLILDVSLPRLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T A VA L+KPF L++L + LL
Sbjct: 62 LLVRLRKRGQNLPVLLLTAKADVADRVKGLNSGADDYLTKPFDLQELEARIRALLRR 118
>gi|229101340|ref|ZP_04232084.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228682045|gb|EEL36178.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 223
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKAKSGLEALELIEQKKFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|187777129|ref|ZP_02993602.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
15579]
gi|187774057|gb|EDU37859.1| hypothetical protein CLOSPO_00674 [Clostridium sporogenes ATCC
15579]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V NG A + + EE L++ DI+MP +DG+++
Sbjct: 4 VLIVDDEAEIIELMEIYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ ++ + + KPF + +L+ V +
Sbjct: 64 CMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSIMELLARVKAQIRR 118
>gi|158425656|ref|YP_001526948.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
caulinodans ORS 571]
gi|158332545|dbj|BAF90030.1| phosphate regulon transcriptional regulatory protein [Azorhizobium
caulinodans ORS 571]
Length = 233
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GY V + G A ++RE L++ D ++P +
Sbjct: 1 MPARILIIEDEEPLTLLLRYNLESEGYAVDNVGRGDEAETRLRESVPDLVILDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L V+ +T A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRTRPETERLPVIMLTARGEETERVRGLATGADDYVVKPFSVPELLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|219849342|ref|YP_002463775.1| response regulator receiver modulated serine phosphatase
[Chloroflexus aggregans DSM 9485]
gi|219543601|gb|ACL25339.1| response regulator receiver modulated serine phosphatase
[Chloroflexus aggregans DSM 9485]
Length = 385
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D + R L + L + G+ + + ++G + + EPF ++L D++MPEMDG
Sbjct: 8 RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREPFDVILLDLMMPEMDGFT 67
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ I+ + L+KPF+ L ++N L K
Sbjct: 68 VLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQTLLYAKINACLERK 127
>gi|186474207|ref|YP_001861549.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184196539|gb|ACC74503.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 251
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 13 KRVLIVEDDVDIANVLSLHLRDERYEVVHSADGNEGLRLLEQGNWDALILDLMLPGVDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 73 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 130
>gi|302870116|ref|YP_003838753.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315503607|ref|YP_004082494.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|302572975|gb|ADL49177.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315410226|gb|ADU08343.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
ED++ L L K G+EV G +A + ++L D+++PEM G E+ R+
Sbjct: 2 VEDEESFSDALSYMLRKEGFEVSVAATGPAALTEFDRTGADIVLLDLMLPEMSGTEVCRQ 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T + ++KP+ R+LV + +L ++
Sbjct: 62 LRQR-SHVPIIMVTARDSEIDKVVGLEIGADDYVTKPYSPRELVARIRAVLRRQS 115
>gi|228993268|ref|ZP_04153184.1| Uncharacterized sensory transduction protein ycbL [Bacillus
pseudomycoides DSM 12442]
gi|228999318|ref|ZP_04158898.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides Rock3-17]
gi|229006873|ref|ZP_04164505.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides Rock1-4]
gi|228754366|gb|EEM03779.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides Rock1-4]
gi|228760515|gb|EEM09481.1| Uncharacterized sensory transduction protein ycbL [Bacillus
mycoides Rock3-17]
gi|228766336|gb|EEM14979.1| Uncharacterized sensory transduction protein ycbL [Bacillus
pseudomycoides DSM 12442]
Length = 230
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G+++ ++G + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDSSIQEMVEKYLTKEGFQITIASDGEEGVLTFLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKASIRR 119
>gi|118464519|ref|YP_882587.1| TcrA protein [Mycobacterium avium 104]
gi|118165806|gb|ABK66703.1| TcrA protein [Mycobacterium avium 104]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + + + L G+ VV+ NG + E PF +++ DI++P G E
Sbjct: 2 RVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T D+ L+KPF R LV + L+
Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118
>gi|56130694|ref|YP_145597.1| response regulator [Ralstonia metallidurans CH34]
gi|94152380|ref|YP_581787.1| regulatory protein CzcR [Cupriavidus metallidurans CH34]
gi|2500741|sp|Q44006|CZCR_RALME RecName: Full=Transcriptional activator protein CzcR
gi|1403127|emb|CAA67086.1| czcR [Cupriavidus metallidurans CH34]
gi|56068684|emb|CAI11246.1| response regulator [Cupriavidus metallidurans CH34]
gi|93358750|gb|ABF12837.1| regulator , CzcR ,two components regulatory system involved in
Cd(II), Zn(II), Co(II) resistance [Cupriavidus
metallidurans CH34]
Length = 225
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L K L ++G+ V NNG E + +++ D+++P MDG
Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+F+T VA L KPF +L+ + R L
Sbjct: 62 VIKSIRSK-SETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLR 116
>gi|148545543|ref|YP_001265645.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148509601|gb|ABQ76461.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 239
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DDD++R L L AGY V++ +G D++ L++ D+++P D
Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLTDAGYSVLAAADGQQMRDQLARHKVELVVLDLMLPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L
Sbjct: 61 GLSLCRQL-QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119
>gi|282860511|ref|ZP_06269577.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282564247|gb|EFB69783.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|320009413|gb|ADW04263.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLR-VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|237726665|ref|ZP_04557146.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435191|gb|EEO45268.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1441
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D++++R F++ L K Y ++ NG + +R E L+L+D++MP MDGIE
Sbjct: 1175 TVLVVDDNEELRHFIVSILRKE-YHIIEAENGKKGLEIIRLELPDLVLSDVMMPCMDGIE 1233
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + ++ +A+ ++KPF L ++ LL +
Sbjct: 1234 LLEEVKKNHDTSHIPFVLLSAKSALDDRIRGLEYGADDYITKPFSSGYLRARISSLLKQR 1293
>gi|281420578|ref|ZP_06251577.1| two-component system sensor histidine kinase/response regulator
hybrid [Prevotella copri DSM 18205]
gi|281405351|gb|EFB36031.1| two-component system sensor histidine kinase/response regulator
hybrid [Prevotella copri DSM 18205]
Length = 1349
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD+DMR+F+ K Y V + +NG A K+ + P SL+++D +MPEMDG E
Sbjct: 1103 LIVDDDEDMRQFVKAHFEKM-YTVYTADNGKDALRKLEKHPVSLIISDWMMPEMDGPEFC 1161
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E L + +T A +S + KPF ++ L V +LL ++
Sbjct: 1162 RRVRENSEYSHLPFVMLTAKTDDAAKTESMNCGADVYIEKPFSMKYLEASVRQLLEMR 1219
>gi|119489672|ref|ZP_01622431.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119454409|gb|EAW35558.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 226
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ ++ L +AL + GY V + GA+ Y+ + + LL+ D ++P G+E
Sbjct: 2 RILLVDDEVELTLPLSRALTREGYAVDVADEGATGYNLATQHHYDLLILDWMLPHQSGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++F+T + + L KPF LR+L+ V LL
Sbjct: 62 MCQQLRLKNNQIPILFLTAKDTLNDRVEGLDAGADDYLVKPFELRELLARVRALLRR 118
>gi|133757364|ref|YP_001096244.1| hypothetical protein pLEW279b_p02 [Corynebacterium sp. L2-79-05]
gi|296119388|ref|ZP_06837951.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
DSM 20306]
gi|110084139|gb|ABG49293.1| hypothetical protein [Corynebacterium sp. L2-79-05]
gi|295967617|gb|EFG80879.1| DNA-binding response regulator VicR [Corynebacterium ammoniagenes
DSM 20306]
Length = 268
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|77918661|ref|YP_356476.1| two component hybrid sensor histidine kinase [Pelobacter
carbinolicus DSM 2380]
gi|77544744|gb|ABA88306.1| Hpt sensor hybrid histidine kinase [Pelobacter carbinolicus DSM
2380]
Length = 1014
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 5/126 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++LL ED+ ++ L K G V +G A PF LL D MP MDG
Sbjct: 745 KARVLLVEDNPVNQQVAKGMLEKLGCNVTLAADGQEALTAYSHSPFDLLFMDCQMPNMDG 804
Query: 62 IELARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
E R + ++ +T L KPF +R + +NR
Sbjct: 805 YEATRAIRADEKQHHKTTCPIIAMTAHTLPGDRERCLKAGMDDYLGKPFTMRQVRTLLNR 864
Query: 117 LLTIKN 122
L+ +N
Sbjct: 865 WLSARN 870
Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 44/109 (40%), Gaps = 4/109 (3%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ + RR + + L + G + + ++G A ++ + F ++L + +P+M G EL
Sbjct: 607 LIVDPHPLTRRSVQQQLREWGIKAKTADHGKKALAMLQAQNFQIILVALTLPDMPGRELI 666
Query: 66 RRATELDPDLKVMFITGFAAVALNP---DSNAPKNAKVLSKPFHLRDLV 111
+ ++ + IT + L+KP L+
Sbjct: 667 QHCCDVAQTVPKHIIT-LGLTGQKLPPCRISDATTVSYLTKPIRPSKLL 714
>gi|332709747|ref|ZP_08429706.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
gi|332351574|gb|EGJ31155.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
Length = 1135
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE 58
M KIL+ +D+ + L+ L Y++ NG A+ K+R+ L+L DI+MP+
Sbjct: 726 MKAFKILIVDDEPVNLQVLVNHLSLHNYKITQAVNGLDAFTKIRQGYRPDLILLDIMMPK 785
Query: 59 MDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
M G E ++ +L V+ +T ++ A L+KP +L+ +
Sbjct: 786 MTGYEFCKKIRNKYLPNELPVVLLTAKNQISDLVAGFAAGANDYLTKPISKNELLARIKT 845
Query: 117 LLTI 120
L +
Sbjct: 846 HLQL 849
>gi|297159980|gb|ADI09692.1| two component transcriptional regulator, winged helix family
protein [Streptomyces bingchenggensis BCW-1]
Length = 250
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AEDD+ R + L + G V + ++G SA D+ R L++ D++MP++D
Sbjct: 1 MSARILVAEDDEKQARLIRIYLEREGNAVQTVHDGRSAIDRARTTRPDLIVLDVMMPQVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R D + ++ +T A ++KP+ R+L V LL
Sbjct: 61 GLDVCRILR-TDSQVPILLLTARATEEDMLLGLDLGADDYMTKPYSPRELTARVRALLRR 119
>gi|291558626|emb|CBL37426.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V A + L + DI++P+M+
Sbjct: 1 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ +T ++KPF ++V V L
Sbjct: 61 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 119
>gi|323487591|ref|ZP_08092881.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
gi|291547394|emb|CBL20502.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
gi|323399090|gb|EGA91498.1| DNA-binding response regulator [Clostridium symbiosum WAL-14163]
Length = 231
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V A + L + DI++P+M+
Sbjct: 1 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ +T ++KPF ++V V L
Sbjct: 61 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 119
>gi|225010136|ref|ZP_03700608.1| two component transcriptional regulator, winged helix family
[Flavobacteria bacterium MS024-3C]
gi|225005615|gb|EEG43565.1| two component transcriptional regulator, winged helix family
[Flavobacteria bacterium MS024-3C]
Length = 230
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ D+ + L GY+V + +NG K +++ L++ D++MPEMDGIE
Sbjct: 7 KILLVDDEPDILEIVSYNLSAEGYQVYTASNGVEGVAKAKKKQPHLIILDVMMPEMDGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V F+T ++KP + LV++V LL
Sbjct: 67 ACEKIRATPGLENTIVAFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVKALLRR 125
>gi|222081273|ref|YP_002540636.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221725952|gb|ACM29041.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 241
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DG 61
+ +L+ +DD +R+ L + GY V + +NG +++E F +L D V+P DG
Sbjct: 9 EHVLVVDDDPRIRQMLTRYFEDEGYAVSTASNGLEMRACLQQENFDAILLDWVLPGGKDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++LAR D+ ++ +TG V ++KPFHLR++ + +L +
Sbjct: 69 LDLAREIRAQ-SDVPIIMLTGRDDVVDRIVGIEVGADDYIAKPFHLREVHARLKSILRRR 127
>gi|254392878|ref|ZP_05008047.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197706534|gb|EDY52346.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 229
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A RE L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFREAKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPIVMLTAKSDTVDVVVGLESGADDYIIKPFKPKELVARIRARLRR 123
>gi|254384115|ref|ZP_04999460.1| two component system response regulator [Streptomyces sp. Mg1]
gi|194343005|gb|EDX23971.1| two component system response regulator [Streptomyces sp. Mg1]
Length = 255
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G EV S +GA A R +++ DI++P+MDG+
Sbjct: 28 RVLVVDDEASLSELLSMALRYEGCEVRSAGDGAGAVRAARGFRPDVVVLDIMLPDMDGLA 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + P + V+F+T +V ++KPF L ++V + L+
Sbjct: 88 VLGQLRREIPQVPVLFLTARDSVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLVRR 144
>gi|194449382|ref|YP_002048609.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194407686|gb|ACF67905.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
Length = 229
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|167766603|ref|ZP_02438656.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
gi|167711726|gb|EDS22305.1| hypothetical protein CLOSS21_01109 [Clostridium sp. SS2/1]
Length = 238
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V A + L + DI++P+M+
Sbjct: 8 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ +T ++KPF ++V V L
Sbjct: 68 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 126
>gi|220929136|ref|YP_002506045.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999464|gb|ACL76065.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 234
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + + L GY+V + NG A + E L++ D+++P++ G
Sbjct: 6 RKILVVDDETKITEVVKSYLEHEGYKVYTAFNGKQAMNGYNEFNPDLIILDLMLPDISGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R ++ + ++ +T + + KPF + L+ V +L
Sbjct: 66 EICKRIRKI-SLVPIIMLTAKVSDDEVITGLDIGADDYVLKPFSPKQLLARVAAVLRR 122
>gi|41407200|ref|NP_960036.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|41395551|gb|AAS03419.1| TcrA [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 222
Score = 146 bits (371), Expect = 8e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + + + L G+ VV+ NG + E PF +++ DI++P G E
Sbjct: 2 KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDIVILDIMLPGRSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T D+ L+KPF R LV + L+
Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118
>gi|319440749|ref|ZP_07989905.1| two-component system response regulator [Corynebacterium variabile
DSM 44702]
Length = 240
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTDIV 55
+L+ ED++ + L L + G+ V + +G SA D+ P ++L D++
Sbjct: 8 HVLIVEDEESLSEPLAFLLEREGFTVTTAADGPSALDRFAAAESGASPTGPVDIVLLDLM 67
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P M G E+ R+ + V+ +T + ++KP+ R+L+ +
Sbjct: 68 LPGMSGTEVCRQLRS-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIR 126
Query: 116 RLLTI 120
+L
Sbjct: 127 AVLRR 131
>gi|312879224|ref|ZP_07739024.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
gi|310782515|gb|EFQ22913.1| two component transcriptional regulator, winged helix family
[Aminomonas paucivorans DSM 12260]
Length = 241
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD ++ L L + G+ + +G + + L + D+++PE G
Sbjct: 6 KRILVVDDDGELGELLRTYLEREGFACLHVTDGETGLREALSGRQDLAILDVMLPEKSGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R DL V+ +T + KPF R+L V +L
Sbjct: 66 DVLREIRAR-SDLPVLMLTARGDPVDRVVGLELGADDYIPKPFLPRELAARVRAVLRR 122
>gi|319761447|ref|YP_004125384.1| response regulator receiver [Alicycliphilus denitrificans BC]
gi|317116008|gb|ADU98496.1| response regulator receiver [Alicycliphilus denitrificans BC]
Length = 236
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++IL+ EDDD + L L GY+V +G V + L+ D+++P
Sbjct: 1 MNTPKRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RRA + + ++ + ++ L+KPF + +LV V LL
Sbjct: 61 VDGLEICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|294102665|ref|YP_003554523.1| two component transcriptional regulator, winged helix family
[Aminobacterium colombiense DSM 12261]
gi|293617645|gb|ADE57799.1| two component transcriptional regulator, winged helix family
[Aminobacterium colombiense DSM 12261]
Length = 232
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++ + +AL + GYE + ++G SA D L++ D+++P MDG E
Sbjct: 5 RILIVDDEKGIQDIVSQALKRRGYETICASDGDSALDLAFAAHPDLIILDLMLPRMDGWE 64
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T + + KPF L +LV V LL
Sbjct: 65 VCRRLKSNKETALIPIIMLTARRDEMDVVEGLELGADDYMKKPFSLAELVARVGVLLRR 123
>gi|297200596|ref|ZP_06917993.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297147681|gb|EDY53756.2| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 226
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|225025447|ref|ZP_03714639.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
23834]
gi|224941731|gb|EEG22940.1| hypothetical protein EIKCOROL_02345 [Eikenella corrodens ATCC
23834]
Length = 226
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + +L +A + A + E F LLL D+ +P+ D
Sbjct: 1 MNPHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + P V+ +T + KPF R+LV V +L
Sbjct: 61 GFELLKTLRPQHPQ-PVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRR 119
>gi|261417884|ref|YP_003251566.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319767304|ref|YP_004132805.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261374341|gb|ACX77084.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317112170|gb|ADU94662.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 241
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +RR L L + Y + +G A +K + ++L D+++P DGIE
Sbjct: 9 RILVVDDEERIRRLLKMYLERENYVIDEAGDGNEALEKALTNDYDVILLDLMLPGKDGIE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + +M +T + + KPF R++V V
Sbjct: 69 VCKEIRAQ-KTTPIMMLTAKGEESNRVQGFEVGTDDYIVKPFSPREVVLRVK 119
>gi|291570906|dbj|BAI93178.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 222
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD R + L +GY V+S NG A + V + L++TDI MPEMD
Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYMVISATNGQEALELVEKHQPHLIVTDIAMPEMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL +R L V+F+T + L KPF L +L + LL
Sbjct: 61 GFELVKRVRSQPIFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|322420858|ref|YP_004200081.1| Fis family two component sigma54 specific transcriptional regulator
[Geobacter sp. M18]
gi|320127245|gb|ADW14805.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 457
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D++ +R L L GY V +G A +E L+L DI MP+MD
Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGTEALALCNKELPGLVLLDIWMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE +R E P L V+ ++G + S + KP L +V V L++
Sbjct: 61 GIETLKRLKEQHPGLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENALSM 120
>gi|228958286|ref|ZP_04120012.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228801367|gb|EEM48258.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 229
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P ++
Sbjct: 1 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 60 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 119
>gi|225017492|ref|ZP_03706684.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
DSM 5476]
gi|224949731|gb|EEG30940.1| hypothetical protein CLOSTMETH_01419 [Clostridium methylpentosum
DSM 5476]
Length = 237
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +D++ +R + K GY V +G A R+ F +L+ D++MPE+DG
Sbjct: 17 QHILIVDDEEKIRAIIRKYAEFEGYLVSEAADGMEAVKLCRDRDFDILILDVMMPELDGF 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ ++ + KPF R+L+ V +L
Sbjct: 77 STCREIRK-FKNTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPRELMMRVKAILNR 133
>gi|187932998|ref|YP_001885393.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum B str. Eklund 17B]
gi|187721151|gb|ACD22372.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum B str. Eklund 17B]
Length = 234
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D++ + L L AGY+V+S NNG A + E L+L D+++P +
Sbjct: 1 MSDEKILIVDDEEHIIELLKFNLVNAGYKVLSSNNGIDALKIAKMENPKLILLDLMLPGL 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG ++ + + ++ ++ +T ++KPF +R+L+ V +
Sbjct: 61 DGFDVCKEVKKDKETQNISIIMLTAKGEEIDKILGLELGADDYITKPFSVRELLARVKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|148240578|ref|YP_001225965.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147849117|emb|CAK24668.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 265
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V S ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDRDMRELVSGHLEHSGFDVQSADDGIKGQALALQYNPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSAIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|91975373|ref|YP_568032.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris BisB5]
gi|91681829|gb|ABE38131.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB5]
Length = 233
Score = 146 bits (371), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARSDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|331092175|ref|ZP_08341005.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401947|gb|EGG81521.1| hypothetical protein HMPREF9477_01648 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 225
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L + G+ V+ +G A D + +LL+ D++MP+MDG
Sbjct: 5 KILIVDDESRMRKLVKDFLERDGFTVLEAGDGLEAMDVFYDNKDIALLILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R ++ + ++ +T A + ++KPF + LV V +L N
Sbjct: 65 QVCREVRQV-SQVPIIMLTARADEKDELQGFDLGVDEYIAKPFSPKILVARVEAILRRTN 123
>gi|309776080|ref|ZP_07671071.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
gi|308916031|gb|EFP61780.1| regulatory protein VanR [Erysipelotrichaceae bacterium 3_1_53]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y+V C G A +++ + L + D+++P+MD
Sbjct: 1 MN--ILVVDDEQEIAGLVEIYLKNENYDVDVCYTGTQALQNIQKHTYDLAILDVMLPDMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T ++KPF +LV V L
Sbjct: 59 GFTICKTIRQKH-TWPIIMLTAKEQDIDKITGLMIGADDYMTKPFQPLELVARVKAQLRR 117
>gi|229087092|ref|ZP_04219243.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-44]
gi|228696236|gb|EEL49070.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-44]
Length = 230
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G+++ ++G + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVETYLSKEGFQITIASDGEEGVLAFLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAIGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|229120236|ref|ZP_04249487.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228663277|gb|EEL18866.1| Two-component response regulator [Bacillus cereus 95/8201]
Length = 223
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|206972806|ref|ZP_03233728.1| regulatory protein VanR [Bacillus cereus AH1134]
gi|229193839|ref|ZP_04320763.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
gi|206731690|gb|EDZ48890.1| regulatory protein VanR [Bacillus cereus AH1134]
gi|228589616|gb|EEK47511.1| hypothetical protein bcere0002_54670 [Bacillus cereus ATCC 10876]
Length = 231
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF +L+ V L
Sbjct: 61 GLTICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|167841262|ref|ZP_02467946.1| two component transcriptional regulator, winged helix family
protein [Burkholderia thailandensis MSMB43]
Length = 255
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +I++ +D+ ++R L + L G++V S N + +P+ LL+ DI+MP DG
Sbjct: 13 SGRIIVLDDEAEIRNILQRFLASHGFDVRSARNSTQLDVFLERQPYDLLILDIMMPGEDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T L+KPF R+L+ V +L +
Sbjct: 73 LAVCRRLRARGQTIPILMLTARGDPVDRVVGLELGADDYLAKPFLPRELLARVRAMLRRQ 132
>gi|161525185|ref|YP_001580197.1| two component transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|189350076|ref|YP_001945704.1| OmpR family two-component system phosphate regulon response
regulator [Burkholderia multivorans ATCC 17616]
gi|160342614|gb|ABX15700.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans ATCC 17616]
gi|189334098|dbj|BAG43168.1| OmpR family two-component system phosphate regulon response
regulator [Burkholderia multivorans ATCC 17616]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|116074029|ref|ZP_01471291.1| Two component Transcriptional regulator, Winged helix family
protein [Synechococcus sp. RS9916]
gi|116069334|gb|EAU75086.1| Two component Transcriptional regulator, Winged helix family
protein [Synechococcus sp. RS9916]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLA+D+ ++ L L G+ V++ ++G +A VR+ P L L D MP M G++
Sbjct: 7 TVLLADDEANIVMLLEMELEAEGFTVLTASDGVTAMKTVRDTPPDLALLDWNMPGMTGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + L V+ IT + + ++KPF++R+++ LL
Sbjct: 67 ICRRLRDTGVFLPVIMITARDEMDDRVAALEAGADDFIAKPFNVREVLARAKALLRR 123
>gi|16763378|ref|NP_458995.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144856|ref|NP_808198.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213022636|ref|ZP_03337083.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213161168|ref|ZP_03346878.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213427589|ref|ZP_03360339.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213852210|ref|ZP_03381742.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289825547|ref|ZP_06544748.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25300974|pir||AD1075 probable two-component response regulator STY4935 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16505687|emb|CAD03419.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29140495|gb|AAO72058.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|290960601|ref|YP_003491783.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260650127|emb|CBG73243.1| putative two-component system response regulator [Streptomyces
scabiei 87.22]
Length = 464
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEM 59
M ++LL EDD+ + L L G V GA P+ ++L D+ +P+M
Sbjct: 1 MGVRVLLIEDDETIAEPLADGLRHFGLTVHHVATGADGL----RGPYGDVVLLDLGLPDM 56
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI++ R D+ ++ ++ A L+KPF +R+LV + + +
Sbjct: 57 DGIDVCRGIR-RTSDVPLIILSARGEEADRVLGLELGADDYLAKPFSIRELVARIRAV-S 114
Query: 120 IKN 122
++
Sbjct: 115 RRH 117
>gi|212709152|ref|ZP_03317280.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
30120]
gi|212688064|gb|EEB47592.1| hypothetical protein PROVALCAL_00185 [Providencia alcalifaciens DSM
30120]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ +R + L + G++ ++ SA ++ + L+L D ++P
Sbjct: 1 MARRILVVEDEAPIREMVCFVLEQNGFQPTEADDYDSAIAQLVDPLPDLVLLDWMIPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI++ + D+ VM +T L KPF ++L+ V +L
Sbjct: 61 GIQVIKHMKRDSATRDVPVMMLTARGEEEDRVKGLEVGADDYLIKPFSPKELIARVKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254422985|ref|ZP_05036703.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196190474|gb|EDX85438.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + KILL +D+ +R + L + +EV +N ++ +++E ++L++DI+MP
Sbjct: 1 MTEAPSKILLVDDEPGLRESVQAYLEDSDFEVRVASNAQEGWELLQQEIPNVLISDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++DG + ++ E L V+F+T + L KPF +LV V
Sbjct: 61 QVDGYQFLKQVREDARFQALPVVFLTARGMTSDRIQGYQAGADAYLPKPFDPEELVAIVT 120
Query: 116 RLLTIK 121
L+ +
Sbjct: 121 SLIERR 126
>gi|183601907|ref|ZP_02963276.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|219682821|ref|YP_002469204.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis AD011]
gi|241190397|ref|YP_002967791.1| two-component system response regulator [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241195803|ref|YP_002969358.1| two-component system response regulator [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183218792|gb|EDT89434.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis HN019]
gi|219620471|gb|ACL28628.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis AD011]
gi|240248789|gb|ACS45729.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis Bl-04]
gi|240250357|gb|ACS47296.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis DSM 10140]
gi|295793384|gb|ADG32919.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis V9]
Length = 235
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ L+ L + GYE G A++ E F L+L D+++P +
Sbjct: 1 MT-RILVVEDEPSYLDPLLYQLTREGYEAHGAATGEEAWELYEEMEFDLVLLDLMLPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR EL + ++ +T + ++KP+ R+L+ ++ +L
Sbjct: 60 GTTLCRRMHELRR-VPIIMVTAKSTENDVIVGLEIGADDYVTKPYSFRELLARIHAVLRR 118
>gi|160931432|ref|ZP_02078828.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
gi|156869497|gb|EDO62869.1| hypothetical protein CLOLEP_00265 [Clostridium leptum DSM 753]
Length = 223
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D++ +R + K G+E V +G A + R+E F L++ D++MPE+D
Sbjct: 1 MS-RLLIVDDEERIRDIIKKYAQFEGFETVEAVDGLQAVEICRKESFDLIIMDVMMPELD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G R + V+ ++ + KPF ++L+ V+ +L
Sbjct: 60 GFSAVREIRK-TSSTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVSAILKR 118
>gi|194365077|ref|YP_002027687.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|194347881|gb|ACF51004.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
Length = 242
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ +DD+D+R L + LG+AGY+V + +G + + E L++ D+ +P DG+
Sbjct: 8 HRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L+KPF R+L+ + +L
Sbjct: 68 TLCRDLRAR-SNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 124
>gi|77920671|ref|YP_358486.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77546754|gb|ABA90316.1| two component transcriptional regulator, winged helix family
[Pelobacter carbinolicus DSM 2380]
Length = 223
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + F+ + L + + V +G P+ ++L D+++P+ DG+E
Sbjct: 2 RVLVVEDEKKVASFIKRGLEEEDFTVDVAFDGEEGLYLAENNPYDIILMDLMLPKKDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D V+ +T AV + L+KPF +L+ V LL
Sbjct: 62 VIKELRTKDVTTPVLCLTAKDAVEDIVSGLDSGSDDYLTKPFAFSELLARVKALLRR 118
>gi|17232371|ref|NP_488919.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17134016|dbj|BAB76578.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 407
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L L +AG+ V NG SA KV+E +L+L D++MP MDG E
Sbjct: 9 VLIVDDIPTNIKVLFDILNQAGFRVSVAKNGLSALAKVQETLPNLILLDVMMPGMDGFET 68
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R D+ V+F+T + ++KP +++ +N L ++
Sbjct: 69 CRHLKANPKTKDIPVIFMTALSDTVNKVKGLQIGAVDYITKPIEYEEVLARINVHLELR 127
>gi|298247403|ref|ZP_06971208.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297550062|gb|EFH83928.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 225
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED + + + L + Y +G A P+ LL+ D+++P +DG E
Sbjct: 2 RILVAEDHPSLGPDIQRGLERFHYVTDLATDGEDALASALATPYDLLILDVMLPSLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR L ++F+T + L KPF R+L V LL +
Sbjct: 62 VCRRLRSAHRTLPILFLTARGEIDDRVRGLDLGGDDYLVKPFVFRELEARVRALLRRE 119
>gi|260548814|ref|ZP_05823036.1| transcriptional regulator [Acinetobacter sp. RUH2624]
gi|260407982|gb|EEX01453.1| transcriptional regulator [Acinetobacter sp. RUH2624]
Length = 228
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHVMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTSFQQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|229190104|ref|ZP_04317108.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
gi|228593327|gb|EEK51142.1| Two component transcriptional regulator, winged helix [Bacillus
cereus ATCC 10876]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 1 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 60 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 119
>gi|227874456|ref|ZP_03992632.1| response regulator [Oribacterium sinus F0268]
gi|227839684|gb|EEJ50138.1| response regulator [Oribacterium sinus F0268]
Length = 224
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M + KIL+ +D++ M++ L L YEV+ NG A D +E+ +L++ D++MP+
Sbjct: 1 MEKIKILVVDDEERMQKLLKDFLKMKDYEVLLAGNGEEAIDLFFKEKSIALIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + E + V+ +T + + +SKPF + LV V LL
Sbjct: 61 MDGWTALKTIRE-HSKVPVIMLTARSEENDELKGFDYGADEYISKPFSPKILVARVEALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|221105902|ref|XP_002159225.1| PREDICTED: hypothetical protein [Hydra magnipapillata]
Length = 232
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L L +EV NG ++K +++ + L + D++MP DG
Sbjct: 4 KKILLVEDDPNFGSVLRDYLSLNDFEVTLAKNGMEGFEKFKKDTYDLCILDVMMPYKDGY 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR E + ++ ++F+T L+KPF L+ ++ ++ K
Sbjct: 64 TLAREIREKNAEVPIIFLTAKTLKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 122
>gi|124003289|ref|ZP_01688139.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
gi|123991387|gb|EAY30818.1| two-component hybrid sensor and regulator [Microscilla marina ATCC
23134]
Length = 1269
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61
KIL+ +D+ + L L Y + ++G A ++E EPF ++L D++MP+M G
Sbjct: 886 KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E+ R E P +L V+ +T + L+KPF +L++ +
Sbjct: 946 YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELLSRIKTH 1003
>gi|227543768|ref|ZP_03973817.1| two component response regulator [Lactobacillus reuteri CF48-3A]
gi|300908835|ref|ZP_07126298.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
gi|77745289|gb|ABB02545.1| response regulator [Lactobacillus reuteri]
gi|227186267|gb|EEI66338.1| two component response regulator [Lactobacillus reuteri CF48-3A]
gi|300894242|gb|EFK87600.1| DNA-binding response regulator [Lactobacillus reuteri SD2112]
Length = 221
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 53/112 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ + L A+ +GY+V NNG A ++ +E + +++ DI+MP G+E
Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T L+KPF L++L+ +
Sbjct: 62 ALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLTKPFSLKELLARLR 113
>gi|47569985|ref|ZP_00240648.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|47553333|gb|EAL11721.1| DNA-binding response regulator [Bacillus cereus G9241]
Length = 254
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYDAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDV 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 94 CFELRKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 148
>gi|308175221|ref|YP_003921926.1| hypothetical protein BAMF_3330 [Bacillus amyloliquefaciens DSM 7]
gi|307608085|emb|CBI44456.1| Uncharacterized transcriptional regulatory protein RBAM_032050
[Bacillus amyloliquefaciens DSM 7]
gi|328555193|gb|AEB25685.1| hypothetical protein BAMTA208_17665 [Bacillus amyloliquefaciens
TA208]
Length = 225
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + + ++G++V +G +A + L++ D++MP+MDG E+
Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVQLIESTHIDLIILDVMMPKMDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T L KPF +L V LL
Sbjct: 64 SEAVRSFT-DIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118
>gi|254479525|ref|ZP_05092845.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
gi|214034545|gb|EEB75299.1| response regulator receiver domain protein [Carboxydibrachium
pacificum DSM 12653]
Length = 223
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
K+L+ ED++ MR L L GY+V++ NG D E ++L DI++P++ G
Sbjct: 2 HKVLVIEDEEGMRDILKTYLENNGYQVLTAKNGKEGLDLFNENKDIKIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF R++V V +L+
Sbjct: 62 WSLLKTIRE-TSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSR 119
>gi|210617002|ref|ZP_03291337.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
gi|210149525|gb|EEA80534.1| hypothetical protein CLONEX_03559 [Clostridium nexile DSM 1787]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y+V G A + + L L D+++P++D
Sbjct: 1 MN--ILVVDDEKEIADVIALYLQNDEYQVHKFYTGEEALNCIETTKIDLALLDVMLPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E V+ +T + KPF+ +LV V L
Sbjct: 59 GFEILKRIREKY-TFPVIMLTAKVDYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117
>gi|187934340|ref|YP_001885676.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187722493|gb|ACD23714.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 230
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V G A + +E L++ D++MP+MD
Sbjct: 1 MNNNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E ++ ++ ++ + KPF+ +L + L
Sbjct: 61 GFEVCSKVRERY-NIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRR 119
>gi|169794777|ref|YP_001712570.1| OmpR family transcriptional regulator [Acinetobacter baumannii AYE]
gi|213157895|ref|YP_002320693.1| two component signal transduction system response regulator
[Acinetobacter baumannii AB0057]
gi|215482321|ref|YP_002324503.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
AB307-0294]
gi|301345681|ref|ZP_07226422.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
AB056]
gi|301511858|ref|ZP_07237095.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
AB058]
gi|301594996|ref|ZP_07240004.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
AB059]
gi|332852228|ref|ZP_08434033.1| response regulator receiver domain protein [Acinetobacter baumannii
6013150]
gi|332870450|ref|ZP_08439214.1| response regulator receiver domain protein [Acinetobacter baumannii
6013113]
gi|169147704|emb|CAM85567.1| transcriptional regulator protein (OmpR family),response regulator
in two-component regulatory system with BaeS, regulates
RNA synthesis [Acinetobacter baumannii AYE]
gi|213057055|gb|ACJ41957.1| two component signal transduction system response regulator
[Acinetobacter baumannii AB0057]
gi|213985926|gb|ACJ56225.1| Transcriptional regulatory protein baeR [Acinetobacter baumannii
AB307-0294]
gi|332729358|gb|EGJ60698.1| response regulator receiver domain protein [Acinetobacter baumannii
6013150]
gi|332732187|gb|EGJ63455.1| response regulator receiver domain protein [Acinetobacter baumannii
6013113]
Length = 228
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I+L ED+ ++ + L AG+EV ++G AY ++ +L++ D+++P MDG+
Sbjct: 2 KHIMLVEDEVELAHLVRDYLEAAGFEVSMFHDGQDAYTNFQQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|160892783|ref|ZP_02073573.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
gi|156865824|gb|EDO59255.1| hypothetical protein CLOL250_00314 [Clostridium sp. L2-50]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
+ K+L+ +D+ MR+ + L K GY V+ +G A D L++ D++MP+MD
Sbjct: 3 SIKVLVVDDESRMRKLVKDFLSKKGYIVLEAGDGEEAVDIFMNNKDIGLIILDVMMPKMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + + ++ +T + + ++KPF + LV V +L
Sbjct: 63 GWETCKEIRK-FSQVPIIMLTAKSDERDELLGFELGIDEYITKPFSPKILVARVEAILRR 121
>gi|110799600|ref|YP_696918.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|168210169|ref|ZP_02635794.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|168213656|ref|ZP_02639281.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|168215869|ref|ZP_02641494.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|169344243|ref|ZP_02865225.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|182626272|ref|ZP_02954029.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|110674247|gb|ABG83234.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|169297702|gb|EDS79802.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|170711758|gb|EDT23940.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|170714853|gb|EDT27035.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|177908451|gb|EDT70989.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|182382158|gb|EDT79637.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 227
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R FL + ++V+ C +G K E + + D+++P M+G E
Sbjct: 2 KILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E P + ++ +T + KPF+ ++ V L+
Sbjct: 62 VCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118
>gi|87200295|ref|YP_497552.1| two component transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87135976|gb|ABD26718.1| two component transcriptional regulator, winged helix family
[Novosphingobium aromaticivorans DSM 12444]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD + + GY+V + ++G A E+ L+L D ++ GIE
Sbjct: 5 KLLLVEDDTALAELVEYRFRGEGYDVRTTDDGDEALLLAAEDTPDLVLLDWMIGGTSGIE 64
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + ++ +T + ++KPF R+L+ V +L
Sbjct: 65 VCRRLRRNKETAHVPIIMLTARSDEDDRIRGLEIGADDYVTKPFSPRELIARVGAVLRR 123
>gi|84498188|ref|ZP_00996985.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
gi|84381688|gb|EAP97571.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
Length = 227
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + L L G EV +G+ A RE ++L D+++P +DG+E
Sbjct: 6 RVLVVDDDLALAEMLGIVLRNEGLEVDHVADGSGALAAFRETRPDVVLLDVMLPGIDGLE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T + KPF ++L+ V L
Sbjct: 66 VCRRIRAE-SGVPIVMLTARTDTIDVVVGLESGADDYVVKPFKPQELIARVRARLRR 121
>gi|47567511|ref|ZP_00238223.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|47555913|gb|EAL14252.1| DNA-binding response regulator [Bacillus cereus G9241]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYTVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|329890384|ref|ZP_08268727.1| phosphate regulon transcriptional regulatory protein PhoB
[Brevundimonas diminuta ATCC 11568]
gi|328845685|gb|EGF95249.1| phosphate regulon transcriptional regulatory protein PhoB
[Brevundimonas diminuta ATCC 11568]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+D + L L K GY+V +G ++ E L+L D ++P++
Sbjct: 1 MQPYILVMEDEDALATLLQYNLEKEGYDVAVAADGEEGMLQIDERTPDLILLDWMLPKLS 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR +L ++ +T ++KPF + +L + +L
Sbjct: 61 GIEVCRRVRGRAETRNLPIIMLTARGEETDRVRGLDTGADDYMTKPFSMTELTARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|306834849|ref|ZP_07467910.1| response regulator [Corynebacterium accolens ATCC 49726]
gi|304569273|gb|EFM44777.1| response regulator [Corynebacterium accolens ATCC 49726]
Length = 268
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|299069602|emb|CBJ40874.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
CMR15]
Length = 245
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|295836940|ref|ZP_06823873.1| DNA-binding response regulator [Streptomyces sp. SPB74]
gi|295826289|gb|EFG64773.1| DNA-binding response regulator [Streptomyces sp. SPB74]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+E +G A + L+L D+++P D
Sbjct: 5 MKGRVLVVDDDTALAEMLGIVLRGEGFEPSFVADGDKALAAFHDTKPDLVLLDLMLPGRD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + V+ +T + + KPF ++LV + L
Sbjct: 65 GIEVCRLIRAE-SGVPVVMLTAKSDTVDVVVGLESGADDYIVKPFKPKELVARIRARLRR 123
>gi|295115391|emb|CBL36238.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SM4/1]
Length = 234
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY V N D + E L+L DI+MP MDG+E+
Sbjct: 6 ILVVDDEKEIADLVEICLVSDGYRVFKAENAKEGLDILDRENIHLVLLDIMMPGMDGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CRKIRETN-NIPIIMLSARSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120
>gi|255284065|ref|ZP_05348620.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
gi|255265410|gb|EET58615.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
Length = 235
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +R + L GY V NG +K+ E L++ DI+MP + GI
Sbjct: 6 ILMIEDDPAIREGVRILLEGEGYHVEEAENGRMGLEKLTENT-HLVILDIMMPGISGIRT 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ V+F+T + L KPF +L+ V LL +N
Sbjct: 65 CEEIRKV-SNVPVLFLTAKEQESDKVIGLTAGGDDYLVKPFSYAELLARVKALLRRRN 121
>gi|52079560|ref|YP_078351.1| two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|52784924|ref|YP_090753.1| hypothetical protein BLi01152 [Bacillus licheniformis ATCC 14580]
gi|319646651|ref|ZP_08000880.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
gi|52002771|gb|AAU22713.1| Two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|52347426|gb|AAU40060.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317391239|gb|EFV72037.1| hypothetical protein HMPREF1012_01917 [Bacillus sp. BT1B_CT2]
Length = 224
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 5/120 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +LL +D++ M L L Y G A D ++ F L++ DI+MPEMD
Sbjct: 1 MN--VLLVDDENRMLDLLELYLEH--YSCTKAATGKEALDLIKMRNFDLVILDIMMPEMD 56
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + L + V+ +T L+KPF + L+ ++ +L
Sbjct: 57 GWTVCKEIRRLTS-IPVIMLTAKNGQDDIVRGLNCGADDYLTKPFSEKVLLAKIEAVLRR 115
>gi|331268468|ref|YP_004394960.1| transcriptional regulatory protein [Clostridium botulinum
BKT015925]
gi|329125018|gb|AEB74963.1| transcriptional regulatory protein [Clostridium botulinum
BKT015925]
Length = 247
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED++++R L +L GY + + G + L++ D+++P +
Sbjct: 13 MKENILIIEDEENIRDILNYSLNNEGYSIKEASTGEEGIKIIENSNIDLIILDLMLPGIS 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + ++ +T + ++KPF +R+++ + L
Sbjct: 73 GYDVCREINPNYK-IPIIMLTAKNDIVDKVIGLELGADDYITKPFDIREVIARIKVCLRR 131
>gi|308069282|ref|YP_003870887.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
gi|305858561|gb|ADM70349.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa E681]
Length = 232
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEM 59
M+ K+L+ ED++ +R F++ L + G+EV+ + G A + + + L D+++P M
Sbjct: 1 MS-KVLIMEDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGM 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RR E + + ++F+T + + +SKPF +L+ + LL
Sbjct: 60 DGFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|302560283|ref|ZP_07312625.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
Tu4000]
gi|302477901|gb|EFL40994.1| DNA-binding response regulator RegX3 [Streptomyces griseoflavus
Tu4000]
Length = 225
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPAALEAGMRGGIDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRSEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|255327015|ref|ZP_05368091.1| two component transcriptional regulator, winged helix family
[Rothia mucilaginosa ATCC 25296]
gi|255296232|gb|EET75573.1| two component transcriptional regulator, winged helix family
[Rothia mucilaginosa ATCC 25296]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ +DDD + + L + G+ V C NG+ A++ L+L D+++P M+GI
Sbjct: 7 HTILVVDDDDALAEMIGLVLAQEGFNAVFCENGSRAFETFMRSTPDLVLLDLMLPGMNGI 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ ++ ++ ++ +T + ++KPF +L+ + L +
Sbjct: 67 EVCQQIR-RSSNVPIIMLTAKSDTEDVVKGLEAGADDYIAKPFKHAELLARIRTRLRPR 124
>gi|229112671|ref|ZP_04242207.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
gi|228670803|gb|EEL26111.1| DNA-binding response regulator [Bacillus cereus Rock1-15]
Length = 224
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALEKWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|298492565|ref|YP_003722742.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
gi|298234483|gb|ADI65619.1| multi-sensor hybrid histidine kinase ['Nostoc azollae' 0708]
Length = 1322
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L K L K GY+V S +G A V + L+L DI+M +M+G E+
Sbjct: 13 ILVVDDNPVNLVILSKVLSKYGYKVRSAPDGEMALKSVEAKLPDLILLDIMMSDMNGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E D+ V+FI+ + A ++KPF ++++ V L I+
Sbjct: 73 CNRLKTNEKTRDIPVIFISALEEPLDKVKAFTLGGADYIAKPFQTQEVIARVENQLRIR 131
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ E+ + ++FL + L G+EV + NG + + L+ DI MP M+G E
Sbjct: 1104 RLLIVENQWESQQFLAELLVPLGFEVYTAENGQEGVELWQRCQPHLIFMDIQMPVMNGYE 1163
Query: 64 LARRATELDPD--------LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ ++ + K++ +T A + + KPF L+N++
Sbjct: 1164 ATQKIRAMEMNNLTDILQPTKIIALTASAFEEQRTYILSIGCDDFICKPFREEFLLNKLA 1223
Query: 116 RLLTIK 121
L IK
Sbjct: 1224 EHLGIK 1229
>gi|218895381|ref|YP_002443792.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228906040|ref|ZP_04069931.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228963358|ref|ZP_04124521.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|218542285|gb|ACK94679.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228796345|gb|EEM43790.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228853610|gb|EEM98376.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|89899322|ref|YP_521793.1| two component transcriptional regulator [Rhodoferax ferrireducens
T118]
gi|89344059|gb|ABD68262.1| two component transcriptional regulator, winged helix family
[Rhodoferax ferrireducens T118]
Length = 234
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +L+ EDD + + + + L ++G+ V +G + ++ +P L++ D+++P+MD
Sbjct: 1 MTQHLLMIEDDTRLAQMVSEYLAQSGFVVGHAGDGQTGLTDLQSDPPDLVILDLMLPDMD 60
Query: 61 GIELARRATEL---DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ RR L + V+ +T L KPF R+L+ + +
Sbjct: 61 GLEVCRRIRSLPGALAQIPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|311278811|ref|YP_003941042.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Enterobacter cloacae SCF1]
gi|308748006|gb|ADO47758.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Enterobacter cloacae SCF1]
Length = 461
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 62/118 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E +NG +A + + P ++L DI MPEM+GI+
Sbjct: 6 RILIVDDEDNVRRMLATAFSLQGHETHCASNGRTALEHFADTPPDVVLMDIRMPEMNGID 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P + ++ +T +A V ++ + KPF L +L + R + ++
Sbjct: 66 TLKVMRAQQPRIPIILMTAYAEVETAVEALRSGAFDYVIKPFDLDELNLLIQRAMQMQ 123
>gi|291545612|emb|CBL18720.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 230
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K+RE+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|282896672|ref|ZP_06304680.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
gi|282900162|ref|ZP_06308118.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281194911|gb|EFA69852.1| Two component Transcriptional regulator, Winged helix family
[Cylindrospermopsis raciborskii CS-505]
gi|281198390|gb|EFA73278.1| Two component Transcriptional regulator, Winged helix family
[Raphidiopsis brookii D9]
Length = 247
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L+L D+++P +DG
Sbjct: 3 RILVIDDDPAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLILLDLMLPRVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ V+ +T + L+KPF + +++ V LL
Sbjct: 63 ICQRLRRDERTAEIPVLMLTALNQTQYKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|228939139|ref|ZP_04101733.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228972017|ref|ZP_04132634.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228978626|ref|ZP_04138998.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis Bt407]
gi|229150234|ref|ZP_04278455.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1550]
gi|228633206|gb|EEK89814.1| Two component transcriptional regulator, winged helix [Bacillus
cereus m1550]
gi|228781066|gb|EEM29272.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis Bt407]
gi|228787676|gb|EEM35638.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228820508|gb|EEM66539.1| Two component transcriptional regulator, winged helix [Bacillus
thuringiensis serovar berliner ATCC 10792]
Length = 232
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 4 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 63 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122
>gi|227487463|ref|ZP_03917779.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227092687|gb|EEI27999.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
Length = 240
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129
>gi|119493491|ref|ZP_01624158.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119452674|gb|EAW33854.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 224
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L ++L Y + G + ++ V+ + L++ D+++P+++GI
Sbjct: 2 RILLVEDDQRIAKALSRSLQTQNYVIDVALEGEAGWEFVQSFEYDLIVLDVMLPKLNGIN 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + + V+ +T + + KPF L +L + LL
Sbjct: 62 LCQRIRQAGYTMPVLMLTAKDSSQDKVIGLDAGADDYVVKPFDLPELAARIRALLRR 118
>gi|172064834|ref|YP_001815546.1| two component transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|171997076|gb|ACB67993.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MC40-6]
Length = 239
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|154250165|ref|YP_001410990.1| two component transcriptional regulator [Fervidobacterium nodosum
Rt17-B1]
gi|154154101|gb|ABS61333.1| two component transcriptional regulator, winged helix family
[Fervidobacterium nodosum Rt17-B1]
Length = 239
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ I++ +D ++ + L K GY+V+ + A +++E+ + + DI++P MDG
Sbjct: 3 KKTIMIIDDQPEILELVSFTLQKEGYDVIPAEDAEKALQELKEKDVDMFIVDIMLPNMDG 62
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R D V+F++ + KPF +R+L+ + +
Sbjct: 63 FEFVRTIRAKDKHKLTPVIFLSAKGEEFDKVLGLELGADDYIVKPFSVRELLARIRAVFR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|331698892|ref|YP_004335131.1| winged helix family two component transcriptional regulator
[Pseudonocardia dioxanivorans CB1190]
gi|326953581|gb|AEA27278.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length = 224
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + + L K G+ V ++GA+ D VR ++ D+ +P +D
Sbjct: 1 MAGLVLVVEDEPAIADLIRLYLRKDGFGVHVEHDGAAGLDAVRRLAPVAVVLDVGLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR D V+F+T ++KPF R+LV V +L
Sbjct: 61 GVEVCRRLRAADDWTPVLFVTARDDEVDRILGLEMGADDYVTKPFSPRELVARVRTVLRR 120
>gi|301054717|ref|YP_003792928.1| transcriptional regulator [Bacillus anthracis CI]
gi|300376886|gb|ADK05790.1| transcriptional regulator [Bacillus cereus biovar anthracis str.
CI]
Length = 226
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDELDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|257886987|ref|ZP_05666640.1| response regulator [Enterococcus faecium 1,141,733]
gi|257823041|gb|EEV49973.1| response regulator [Enterococcus faecium 1,141,733]
Length = 218
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L++ L K GY V S G A D + ++ F L+L DI++PE+DG E
Sbjct: 2 KILVVEDNPAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLVLLDIMLPEIDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E DL V+F+T ++ ++KPF L +L+ V +L
Sbjct: 62 VFAYMWEY--DLPVIFLTAKDQLSDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116
>gi|254775852|ref|ZP_05217368.1| TcrA [Mycobacterium avium subsp. avium ATCC 25291]
Length = 222
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + + + L G+ VV+ NG + E PF +++ DI++P G E
Sbjct: 2 KVLLVEDEPRLAATVARGLKAEGFVVVTVGNGVDGLAEATENPFDVVILDIMLPGRSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T D+ L+KPF R LV + L+
Sbjct: 62 VLRRMRSNNVWTPVLMLTAKDGEYDETDAFDLGADDYLTKPFSFRVLVARLRALVRR 118
>gi|229098996|ref|ZP_04229931.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-29]
gi|228684494|gb|EEL38437.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
Rock3-29]
Length = 230
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLIKEGFQVTIASDGEKGVNTYLKGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|218249056|ref|YP_002374427.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Cyanothece sp.
PCC 8801]
gi|218169534|gb|ACK68271.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanothece sp. PCC 8801]
Length = 1514
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + L Y V + +G +A + ++++ LLLTDI+MP ++G+
Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGLA 707
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ DL ++ ++ A + K L KPF R+L+ V L +
Sbjct: 708 LLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766
>gi|189423658|ref|YP_001950835.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
gi|189419917|gb|ACD94315.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
Length = 226
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ ED+ D+ L L K GY+ + G + R E L+L D+++P M G
Sbjct: 2 KKVLIVEDERDLAELLAYNLEKEGYQALVTGTGVEGLETARRELPDLILLDLMLPGMMGT 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D + V+ +T + KPF +R+L+ + +L
Sbjct: 62 EVCSALRHSDKTRGIPVLMLTARGDEIDRVVGFEMGADDYIVKPFSMRELMLRIRAILRR 121
Query: 121 KN 122
+
Sbjct: 122 SS 123
>gi|116878444|ref|YP_356197.2| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|114843080|gb|ABA88027.2| two component transcriptional regulator, winged helix family
[Pelobacter carbinolicus DSM 2380]
Length = 236
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL ED+ + R LI L + GY V+ ++G A + L++ D+++P + G
Sbjct: 3 SPHILLVEDELHIARGLIFNLEQEGYRVIHVSSGEQALELAPWSQCLLVILDLMLPGISG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ ++ DP L ++ +T L+KPF L + + V ++
Sbjct: 63 LEVCQQLRAQDPRLPILILTALGKEQDRIAGLEAGADDYLTKPFSLTEFLLRVRGMVNRS 122
Query: 122 N 122
+
Sbjct: 123 S 123
>gi|86747907|ref|YP_484403.1| two component transcriptional regulator [Rhodopseudomonas palustris
HaA2]
gi|86570935|gb|ABD05492.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris HaA2]
Length = 233
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MGARILVVEDEEALTTLLRYNLESDGYDVETVARGDDADTRMKERLPDLVVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRARTDTKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|303246334|ref|ZP_07332614.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
fructosovorans JJ]
gi|302492397|gb|EFL52269.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
fructosovorans JJ]
Length = 651
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 5/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +D++D+RRFL L GY V + NG A E S++LTDI MP MD
Sbjct: 1 MSETLLLVDDEEDIRRFLGLFLSDLGYAVHAAANGEEALAMFDEVAPSIVLTDIKMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---- 116
G+EL +R + PD +V+ I+G + L + A ++KP + L + R
Sbjct: 61 GLELLKRIKAMSPDTEVVMISGHGDMDLAISCLQYEAADFVTKPINHDILDAALKRIDEK 120
Query: 117 -LLTIK 121
L +
Sbjct: 121 LALRRE 126
>gi|299536972|ref|ZP_07050277.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
gi|298727552|gb|EFI68122.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
Length = 230
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +DD D+R + L GY V+ +G A K+ L++ DI+MP M
Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYHVIKAADGLDALKKLENNEVHLIILDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + E ++ ++ ++ A + ++KPFH +L+ V L
Sbjct: 61 DGITATFKIREER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|299532441|ref|ZP_07045833.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
gi|298719679|gb|EFI60644.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
Length = 238
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL EDD + L L G EVV C G + + L+ D+++P +DG+
Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRR 122
>gi|227502288|ref|ZP_03932337.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|227076978|gb|EEI14941.1| response regulator [Corynebacterium accolens ATCC 49725]
Length = 268
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|86606944|ref|YP_475707.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86555486|gb|ABD00444.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 239
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + L + L + GY V GA ++R L++ D+ +P++ G +
Sbjct: 3 RILIIDDDPSICALLKRYLQRQGYSVEVATTGAEGLQQLRAFQPGLVILDLNLPDVSGYD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + + V+ +T A L+KPF L +L V +L
Sbjct: 63 LCQQMQKET-GVYVLMLTSRVNPADKLQGFQLGADDYLTKPFSLPELQARVQAILRR 118
>gi|86357267|ref|YP_469159.1| response regulator PleD [Rhizobium etli CFN 42]
gi|86281369|gb|ABC90432.1| two-component response regulator protein [Rhizobium etli CFN 42]
Length = 457
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T A L+KP + L++ V LL
Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 70.5 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + + ++KAL +VV+ ++ +A + E F L++ + + D + L
Sbjct: 158 VLLVDGRANSQERIVKALKSV-ADVVALSDPQAALFEAAENTFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + L +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADDMVVRALDLGVNDYLIRPVDPNELVARSLTQIRRK 275
>gi|78222609|ref|YP_384356.1| two component, sigma54 specific, Fis family transcriptional
regulator [Geobacter metallireducens GS-15]
gi|78193864|gb|ABB31631.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter metallireducens GS-15]
Length = 458
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ MR FL L + GY V + A + + + L+++D+ MP +D
Sbjct: 1 MEIRILVVDDELSMREFLAILLKREGYAVDQADCAEKALEFLDSITYDLVISDVKMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L R E PD V+ +T F+ ++ ++KPF + ++ V L
Sbjct: 61 GIALLGRIKENSPDTAVLMMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVRNALEK 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|186681898|ref|YP_001865094.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186464350|gb|ACC80151.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 374
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GYE+ ++G A +V + P L+L D++MP MDG E
Sbjct: 11 RILAVDDTRDNLILVQAILESEGYEIDLVSDGIKALRQVEKSPPDLILLDVMMPGMDGYE 70
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ IT F + + + KPF +L+ V LL +K
Sbjct: 71 VTRRIRNNPAISYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRLK 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|315455530|emb|CAY26034.2| PhoP protein [Streptomyces sp. ATCC 55098]
Length = 226
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|300173705|ref|YP_003772871.1| two-component response regulator [Leuconostoc gasicomitatum LMG
18811]
gi|299888084|emb|CBL92052.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRSGLDAALENNYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLRESKK-TPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|268592132|ref|ZP_06126353.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
1131]
gi|291312530|gb|EFE52983.1| transcriptional activator protein Irlr [Providencia rettgeri DSM
1131]
Length = 227
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ R +L K L ++G+ V + NG + E + L++ D+++P+++G E
Sbjct: 2 KLLIVEDEHKTREYLSKGLSESGFIVDAIENGITGLHMATTEDYDLIILDVMLPDINGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+A+ + ++ +T V L KPF +L+ V LL N
Sbjct: 62 IAKSLRNSGKNTPILMLTALGNVEHRVKGLELGADDYLVKPFDFSELLARVRTLLRRGN 120
>gi|255283380|ref|ZP_05347935.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
14469]
gi|255266028|gb|EET59233.1| DNA-binding response regulator PhoP [Bryantella formatexigens DSM
14469]
Length = 249
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED DM R + L Y V SC +G A D + + ++ DI+MP MDG++
Sbjct: 21 RILVAEDQRDMNRLISNRLAAEHYSVDSCFDGQEALDYLECTEYDAVILDIMMPVMDGLQ 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R+ + + V+ +T ++ L KPF +L+ + +L
Sbjct: 81 VLRKLRQRKEHVPVLLLTAMDSIEDRVTGLDAGADDYLVKPFAFEELLARLRVMLR 136
>gi|213650722|ref|ZP_03380775.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
Length = 218
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|169837234|ref|ZP_02870422.1| two component transcriptional regulator, winged helix family
protein [candidate division TM7 single-cell isolate
TM7a]
Length = 129
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + R L L G++V +G + + + ++L D+++P+M
Sbjct: 13 MREKILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMS 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ +R E + ++ +T ++ ++KPF +L+ + LL
Sbjct: 73 GMEVCKRIRE-TSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALL 129
>gi|323357907|ref|YP_004224303.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323274278|dbj|BAJ74423.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 244
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G++ + NG A + +RE LL+ DI+MP +DG+E
Sbjct: 21 RVLVVDDEANLSDLLRMALQNEGWDARTAANGQEALNVIREFGPDLLVLDIMMPGLDGME 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D V+F+T AV + ++KPF+L ++V + +
Sbjct: 81 LLTRIRAAGNDAPVLFLTAKDAVEDRIAGISAGADDYVTKPFNLEEVVVRLRGMARR 137
>gi|307727152|ref|YP_003910365.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307587677|gb|ADN61074.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 246
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R + L K G V NG + + L++ D++MP DG+
Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGTPDLIVLDLMMPGEDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L KPF +R+L+ + +L
Sbjct: 66 LCRELRAGKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRR 123
>gi|218246759|ref|YP_002372130.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257059801|ref|YP_003137689.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|218167237|gb|ACK65974.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256589967|gb|ACV00854.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 246
Score = 146 bits (370), Expect = 9e-34, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDAAISELVSVNLEMAGYDVNQAGDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDERTADIPVLMLTALGETKDKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|329962433|ref|ZP_08300433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
gi|328529989|gb|EGF56877.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
Length = 1481
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ ++R FL + + V+ NG S +K + ++++D++MP MDG
Sbjct: 1207 KESILIVEDNQELRFFLKTIFIQH-FNVIEAENGKSGLEKSKNCQPDIIVSDVMMPGMDG 1265
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R E + ++ +T + + ++KPF L + LL
Sbjct: 1266 IEMVRALREDITTSHIPIVLLTAKSNTESKIEGMKQGADDYITKPFSAAYLKARIFNLLE 1325
Query: 120 IK 121
+
Sbjct: 1326 QR 1327
>gi|326943053|gb|AEA18949.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 223
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|311108366|ref|YP_003981219.1| response regulator 14 [Achromobacter xylosoxidans A8]
gi|310763055|gb|ADP18504.1| response regulator 14 [Achromobacter xylosoxidans A8]
Length = 220
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L AL +AGY V + +G +A E + +++ D+ +P MDG+
Sbjct: 2 RILVVEDEPTLATQLADALRQAGYTVDTAADGGTAQYMGAVETYDVVVLDLGLPVMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ + V+ +T L+KPFH+ +L+ V LL +
Sbjct: 62 VLKQWRAGGQGMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRRSS 120
>gi|310827668|ref|YP_003960025.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium limosum
KIST612]
gi|308739402|gb|ADO37062.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium limosum
KIST612]
Length = 222
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +R + K G EVV +G A + + F +++ DI+MPE+DG
Sbjct: 3 RILMVDDEEKIRAIVRKYAEFEGNEVVEAADGMEAVKLAKSQDFDIIILDIMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D V+ ++ + KPF ++L+ V +L +
Sbjct: 63 ACKEIRK-YKDTPVIMLSARGEEYDRIHGFELGIDDYVVKPFSPKELMMRVGAILKRR 119
>gi|266619604|ref|ZP_06112539.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
gi|288868826|gb|EFD01125.1| DNA-binding response regulator ResD [Clostridium hathewayi DSM
13479]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV N+G + K E F LL+ D+++P +D
Sbjct: 1 MS-RILIIEDEESIAELEKDYLELSGFEVEIENDGEAGLAKALHEDFDLLILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E+ + ++ ++ ++KPF ++V V L
Sbjct: 60 GFEICRKVREV-KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHLAR 118
>gi|264678857|ref|YP_003278764.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|262209370|gb|ACY33468.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
Length = 238
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL EDD + L L G EVV C G + + L+ D+++P +DG+
Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRR 122
>gi|218900386|ref|YP_002448797.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218542036|gb|ACK94430.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 223
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|30018518|ref|NP_830149.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|229125764|ref|ZP_04254792.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|29894058|gb|AAP07350.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|228657704|gb|EEL13514.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAEDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|315650084|ref|ZP_07903162.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
gi|315487667|gb|EFU77972.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ + L + + G+ + +G + R F +L+ D+++P+++
Sbjct: 1 MN--ILIVEDEVLLASSLKEIFEECGHSTICAYDGMEGLELARSSHFDILVLDLMLPKLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++AR + L ++ +T + + + L+KPF R+L+ VN LL
Sbjct: 59 GFQVARTLRKEKNGLPILMLTAKSDILDRVEGLDSGADYYLTKPFDRRELLACVNALLRR 118
>gi|307313311|ref|ZP_07592935.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
gi|307320756|ref|ZP_07600167.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306893574|gb|EFN24349.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306899324|gb|EFN29959.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +DD + L L GY V + + ++ +++ D+++P+ D
Sbjct: 1 MAERVLIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGRRTPDVVILDVMLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR + D+ V+ +T L KPF+ R+L+ + +L
Sbjct: 61 GFETCRRIRAV-SDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRR 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|260891405|ref|ZP_05902668.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
gi|260858788|gb|EEX73288.1| DNA-binding response regulator ResD [Leptotrichia hofstadii F0254]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+A+D+ + L + K + V + +G +A ++ E F ++L D++MP+ DG +
Sbjct: 3 KVLIADDNKQIVSILSEYCKKNNFTVSTVFDGEAALKEIEENEFDIILLDVMMPKKDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ ++ IT + KPF +++ +N +L
Sbjct: 63 VCRQVR-TFSNVPIIMITARGEDYEKIMGLEIGADDYIVKPFSPGEIIARINAILRR 118
>gi|254524497|ref|ZP_05136552.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
gi|219722088|gb|EED40613.1| DNA-binding response regulator OmpR [Stenotrophomonas sp. SKA14]
Length = 236
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ +DD+D+R L + LG+AGY+V + +G + + E L++ D+ +P DG+
Sbjct: 2 HRLLIVDDDNDIRTLLAEQLGRAGYQVSTAADGTAMRQLLDREHVDLIVLDLNLPREDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L+KPF R+L+ + +L
Sbjct: 62 TLCRDLRAR-SNTPVIMLTARAEPIDRVLGLEMGADDYLAKPFEPRELLARIRNVLRR 118
>gi|218245356|ref|YP_002370727.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|257058392|ref|YP_003136280.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
gi|218165834|gb|ACK64571.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
gi|256588558|gb|ACU99444.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8802]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED ++ + + L + + ++G +A + + + L++ D+++P++D
Sbjct: 1 MN--ILIVEDAPEIANLIQETLERESFICQIASDGLAALELFKRQQPDLIILDLMLPKLD 58
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R + + D ++ +T + L KPF +LV V LL
Sbjct: 59 GLEVCTRIRQTSTNKDPYILMLTAKGEAIDRVIGLSTGADDYLVKPFSPIELVARVRALL 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|154687605|ref|YP_001422766.1| putative two-component response regulator [Bacillus
amyloliquefaciens FZB42]
gi|154353456|gb|ABS75535.1| putative two-component response regulator [Bacillus
amyloliquefaciens FZB42]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + + ++G++V +G +A + P L++ D++MP+MDG E+
Sbjct: 4 ILVADDDRHIRELVRLMMEQSGFDVAEAEDGEAAVRLIESAPIDLIILDVMMPKMDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T L KPF +L V LL
Sbjct: 64 SEAVRSFT-DIPILMLTAKGETLDKVQGFTSGADDYLVKPFEPLELEARVKALLKR 118
>gi|91976145|ref|YP_568804.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5]
gi|91682601|gb|ABE38903.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
BisB5]
Length = 1427
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLA+D+ DMR ++ + LG++ YEV + +G +A + ++ L+++DI+MP +DG+
Sbjct: 650 RVLLADDNPDMRDYVARLLGES-YEVDAVGDGVAALEAAWKQRPDLVISDIMMPRLDGLS 708
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D+ V+F++ A + LSKPF R+L+ V L I
Sbjct: 709 LLKALRNDSTLADVPVIFLSARAGEEARVEGLEAGADDYLSKPFSARELLARVRSNLDI 767
Score = 99.4 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62
+L+ ED+ ++ F + L GYE V ++ A + ++ F+++L+D+VMP MDG+
Sbjct: 1307 VLVVEDNSEVGEFSTQLLHDLGYETVLASSAEQALKLLDQDADRFNIVLSDVVMPGMDGV 1366
Query: 63 ELARRATELDPDLKVMFITGFAAV--ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + P+L V+ +G+A V L KP+ + DL + R +T
Sbjct: 1367 ALGREIRKRLPNLPVVLNSGYAHVLADDGHHGFEL-----LHKPYSVEDLSKVLRRAMT 1420
>gi|332876941|ref|ZP_08444694.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332685049|gb|EGJ57893.1| transcriptional regulatory protein RprY [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 249
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++ILL EDD + L L +G++VV NG ++K ++E F + + D++MP DG
Sbjct: 14 NKRILLVEDDPNFGTVLKDYLVMSGFDVVLAKNGMEGFEKFKKETFDMCILDVMMPYKDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + + ++F+T L+KPF L+ ++ +L K
Sbjct: 74 FTLAKEIREKNEKIPIIFLTARTMREDVIKGYRSGGDDYLNKPFDSEILLMKIRSMLQRK 133
>gi|325299898|ref|YP_004259815.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324319451|gb|ADY37342.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1366
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 65/116 (56%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD+++R ++ + L A Y V +C+NG A + + ++ +L+++D++MPEMDG+ L
Sbjct: 1100 ILVVEDDEEIRNYISREL-AADYHVGTCSNGKEALEVIFKQEPALIISDVMMPEMDGLTL 1158
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + + ++ +T N + L+KPF+++ L + V L+
Sbjct: 1159 CRMVKQNLHKRHIPIILLTAKTRDEDNIEGLETGADAYLTKPFNMKILRHTVENLI 1214
>gi|319940840|ref|ZP_08015179.1| winged helix family Two component transcriptional regulator
[Sutterella wadsworthensis 3_1_45B]
gi|319805722|gb|EFW02503.1| winged helix family Two component transcriptional regulator
[Sutterella wadsworthensis 3_1_45B]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DD D L+ G++ V +NG + EPF L++ D++MP M G+
Sbjct: 6 RRLLIIDDDVDFVTLLVDYFTLEGFDTVPAHNGPEGLAHLAREPFDLVVLDVMMPGMSGV 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ E + V+ +T + KP R+LV +N +L
Sbjct: 66 EVLKKMREK-SHIPVLMLTARGDPVDRIVGLELGADDYVQKPCPPRELVARINAILRR 122
>gi|282882097|ref|ZP_06290738.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus lacrimalis 315-B]
gi|281298127|gb|EFA90582.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Peptoniphilus lacrimalis 315-B]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 55/115 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED++ +R+F+ L + GY V +G D R + +++ DI++P +D
Sbjct: 1 MAVKILLVEDEEPIRKFVKINLEREGYTVFEAGSGEEGIDIARSKQPQIVVLDIMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G + + + P+L ++ +T A L+KPF+ +L +
Sbjct: 61 GFAVCKVLRKEFPNLGIIMLTAKAEDYDKIMGLQYGTDDYLTKPFNPTELTLRIK 115
>gi|269838051|ref|YP_003320279.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269787314|gb|ACZ39457.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 244
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDG 61
Q IL+ ED+ + FL + L GY V + GA A D VR++P L++ DI++P +DG
Sbjct: 5 QHILVVEDERAIASFLRRGLVFEGYRVTVADTGARALDAVRDDPPDLIILDIMLPGDIDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+E+ RR + ++ +T VA L KPF +L+ V
Sbjct: 65 LEVCRRIRAAGEGMPILMLTARDEVADRVAGLDAGADDYLIKPFAFEELLARV 117
>gi|229105863|ref|ZP_04236490.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
gi|228677584|gb|EEL31834.1| DNA-binding response regulator [Bacillus cereus Rock3-28]
Length = 223
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV+ +G A +K +E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWKEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D D+ V+ +T + + ++KPF+ +L+ V ++ +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN-MSRR 117
>gi|225013067|ref|ZP_03703482.1| two component transcriptional regulator, winged helix family
[Flavobacteria bacterium MS024-2A]
gi|225002795|gb|EEG40776.1| two component transcriptional regulator, winged helix family
[Flavobacteria bacterium MS024-2A]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ EDD + L + L Y++ NG ++K +++ F L + D++MP DG
Sbjct: 5 NKKILIVEDDPNFGSILKEYLIINDYDITLAKNGIEGFEKFKKDDFDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + + + F+T L+KPF L+ ++ +L +
Sbjct: 65 FTLAKEIREKNDVIPIFFLTAKNLKEDVLKGFKIGADDYLTKPFDSDVLLAKIKAILNRQ 124
Query: 122 N 122
N
Sbjct: 125 N 125
>gi|297584935|ref|YP_003700715.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297143392|gb|ADI00150.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 236
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN++IL+ +D+ D+R L +AL + GY EVV+ N + A+D+ L++ DI++P+
Sbjct: 1 MNERILVVDDEMDLRVLLKEALKQEGYTEVVTAANLSEAWDQFILIEPDLIILDIMLPDG 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G++ + + ++F++ + + + ++KPF +++V V L
Sbjct: 61 NGLDFCAKIRG-HSTVPILFLSAKSDEVDKLLALSLGGDDYVTKPFSPKEVVYRVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|221201978|ref|ZP_03575014.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD2M]
gi|221204892|ref|ZP_03577909.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD2]
gi|221213870|ref|ZP_03586843.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD1]
gi|221166047|gb|EED98520.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD1]
gi|221175749|gb|EEE08179.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD2]
gi|221178061|gb|EEE10472.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia multivorans CGD2M]
Length = 235
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122
Query: 119 TIK 121
+
Sbjct: 123 RRR 125
>gi|71905989|ref|YP_283576.1| PAS [Dechloromonas aromatica RCB]
gi|71845610|gb|AAZ45106.1| PAS protein [Dechloromonas aromatica RCB]
Length = 513
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ K+L +D+ L L K G+EVV NG A + + L+L DI+MP M
Sbjct: 5 MNKMKVLAVDDNRTNLHILQVFLKKLGHEVVLAENGEEAVRRFETDAPDLVLLDIMMPVM 64
Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E ARR + D V+F++ + L+KP + L ++ +
Sbjct: 65 DGFEAARRIKAMTRDRWTPVIFLSALNRDENLVEGLDAGADDYLTKPINFVVLEAKLRSM 124
>gi|315644524|ref|ZP_07897656.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315280031|gb|EFU43328.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++R + L +AG E ++ ++G A + + L++ DI+MP MDG
Sbjct: 3 KILVVDDDPNIRELVKVFLEEAGMEEILEASDGVEALSVMDQASVDLVVMDIMMPNMDGW 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + V+ +T L KPF +LV V LL
Sbjct: 63 ELCREIRRNT-GIPVLMLTAKGETRQIVKGFELGTDDYLVKPFEPAELVVRVKALLKR 119
>gi|262195489|ref|YP_003266698.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
gi|262078836|gb|ACY14805.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
Length = 406
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ +DD R + L EV + +G ++ REEP L+L DI++P +DG+
Sbjct: 21 QRVLVVDDDPANLRLVEAYLADLDVEVSTALSGEQGVEQAREEPPHLVLLDIMLPGIDGL 80
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR D+ V+F+T + A + ++KP +L+ V L I
Sbjct: 81 EACRRIRAAPRTRDVPVIFMTALSDHARKLEGFGVGGVDYVTKPLDRPELLARVRTHLRI 140
Query: 121 K 121
+
Sbjct: 141 Q 141
>gi|238059275|ref|ZP_04603984.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
gi|237881086|gb|EEP69914.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++L+ +D ++ L L G++VV+ A A + E L++ D+++P+
Sbjct: 1 MNAAVRVLVVDDQPNIVDMLATVLRFHGFDVVTATTAAEALRRAGESHPRLVVLDVLLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ R ++ ++F+T A ++KPF + +LV V +L
Sbjct: 61 GDGFEVCRTLRAAGHEIGIVFLTARDAPRDRIAGLTYGGDDYVTKPFSVEELVARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|237735491|ref|ZP_04565972.1| two-component system transcriptional regulator [Mollicutes
bacterium D7]
gi|229381236|gb|EEO31327.1| two-component system transcriptional regulator [Coprobacillus sp.
D7]
Length = 220
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +M L L AGY +G K E+ + L+L D+++P ++
Sbjct: 2 MKMAILIIEDEKNMSDLLKLELTHAGYCCDQAYDGEVGLKKALEQEYELILLDLMLPRIN 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR E+ V+ +T V + L+KPF + +L+ +N LL
Sbjct: 62 GIEVCRRLREI-KQTPVIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 120
Query: 121 KN 122
N
Sbjct: 121 MN 122
>gi|228945524|ref|ZP_04107874.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228814042|gb|EEM60313.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 190
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|226227836|ref|YP_002761942.1| putative two-component response regulator [Gemmatimonas aurantiaca
T-27]
gi|226091027|dbj|BAH39472.1| putative two-component response regulator [Gemmatimonas aurantiaca
T-27]
Length = 358
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ L+ +D+ MR L + + G+E + ++G+ A +++ EP L+L+D MP MDG
Sbjct: 10 RRCLIVDDEPSMRGILRRLMTAEGFECLEASSGSEALERLAAEPVPLMLSDFHMPGMDGA 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL R+ E P V+ IT + V L L+KPF + ++ V + L +
Sbjct: 70 ELLRQVRERWPHTAVVMITAISDVNLAVRCLDSGALDYLTKPFSIEEVRARVAQALEKR 128
>gi|164520392|gb|ABY60251.1| PhoP [Listeria monocytogenes]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L + KAG+ VV+ +G + Y+ E L++ D+++PEMDGIE+
Sbjct: 2 LVVDDEASIVTLLQFNIEKAGFGVVTAEDGRTGYELALSEKPDLIVLDLMLPEMDGIEVT 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF R++V + +L
Sbjct: 62 KKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTKPFSPREVVARIKAILRR 116
>gi|126031093|pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
gi|126031094|pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ E + +R + L + G++ V + SA +++ E L+L + ++P
Sbjct: 1 MARRILVVEAEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLEWMLPGGS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + D+ V+ +T ++KPF ++LV + ++
Sbjct: 61 GIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|94264235|ref|ZP_01288030.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|94266209|ref|ZP_01289918.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93453216|gb|EAT03674.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455346|gb|EAT05550.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 403
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ R L++ L + GY+V + +G A D + +P L+L D++MP +DG+
Sbjct: 7 RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLDGLS 66
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR L V+ T + + ++KP L ++ L +K
Sbjct: 67 ALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPIDFPVLQARMDTQLRLK 126
>gi|146297039|ref|YP_001180810.1| two component transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410615|gb|ABP67619.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + + L K GY NG +A D ++ L++ DI+M + DG
Sbjct: 2 KNILIVDDEPHIVELIKFNLQKEGYNTFEAENGNTALDIIKNNKIDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ ++ + ++KPF +++LV V L
Sbjct: 62 EVLKEIRFNKGTRNLPVILLSAKSEEIDRILGLELGADDYITKPFSVKELVARVKALFRR 121
>gi|172058611|ref|YP_001815071.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171991132|gb|ACB62054.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 223
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ +R + L Y+V + +G A + F L++ D+++P+ G +
Sbjct: 2 HILVVDDEESIRHLVRLQLEIEHYQVETAKSGEEALKLHATQSFDLIILDLMLPDTTGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + PDL ++ +T + ++KPF+ +LV V LL
Sbjct: 62 LIPQLRSSQPDLPILMLTARDQMNDKIIGLQLGADDYMTKPFNGTELVLRVKNLLKR 118
>gi|318040122|ref|ZP_07972078.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 254
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ ++RR L L G++V + +G A + R +++ D++MPE+DG
Sbjct: 10 KILIADDEANIRRILETRLAMQGHQVAAAQDGTEALELFRSVEPDVVVLDVMMPELDGFA 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+ +T VA + KPF ++L + ++
Sbjct: 70 VLERIRAQ-SEVPVIMLTALGDVADRITGLELGADDYMVKPFSPKELEARIQCVMRR 125
>gi|300789759|ref|YP_003770050.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299799273|gb|ADJ49648.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L LG GY V +NG A E P++ ++ DI++P ++G
Sbjct: 3 RILVVEDERRLAEALRAGLGAEGYAVDVAHNGRDALWYAGEHPYAAIVLDIMLPGLNGYR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T ++ L KPF L++ + L+
Sbjct: 63 VCRRLRDQGDSTPILMLTAKDGEDDEIEALDTGADDFLPKPFSYGVLLSRLRALIRR 119
>gi|254411111|ref|ZP_05024889.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196182466|gb|EDX77452.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 224
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L + L Y V +G + +D V + L+L D+++P++DGI
Sbjct: 2 RILLVEDDQRIAKALAETLQDQHYIVDMATDGEAGWDFVEAFSYKLILLDVMLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R V+ +T + KPF L +L + LL N
Sbjct: 62 FCQRLRRSGKMTPVLMLTAKDTSNDKVIGLDAGADDYVVKPFDLPELTARIRALLRRGN 120
>gi|190891316|ref|YP_001977858.1| two-component response regulator protein [Rhizobium etli CIAT 652]
gi|190696595|gb|ACE90680.1| two-component response regulator protein [Rhizobium etli CIAT 652]
gi|327194838|gb|EGE61672.1| two-component response regulator protein [Rhizobium etli CNPAF512]
Length = 457
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGHEALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T A L+KP + L++ V LL
Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + + +++AL +V++ ++ +A + E F L++ + + D + L
Sbjct: 158 VLLVDGRANSQERIVRALKPV-ADVLALSDPQAALFEAAEHAFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + + +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIVRPVDPNELVARSLTQIRRK 275
>gi|149191185|ref|ZP_01869443.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
gi|148835023|gb|EDL52002.1| DNA-binding response regulator GltR [Vibrio shilonii AK1]
Length = 242
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
IL+ +DD+++R L + L K+G++V + +G + + L+L D+++P DG
Sbjct: 6 HILVVDDDEEIRLLLDEYLTKSGFQVSTAEDGVE-MELFIKAKGYPDLILLDVMLPGDDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R D + ++ +T + ++KPF R L+ + LL
Sbjct: 65 FTLCQRVR-RDSQVPIIMLTAVSDETDQIIGLEIGADDYIAKPFSPRQLMARIKALLRRT 123
Query: 122 N 122
+
Sbjct: 124 H 124
>gi|75908541|ref|YP_322837.1| two component LuxR family transcriptional regulator [Anabaena
variabilis ATCC 29413]
gi|75702266|gb|ABA21942.1| two component transcriptional regulator, LuxR family [Anabaena
variabilis ATCC 29413]
Length = 245
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD R + L +GY V++ N+G A V L++TDIVMP M+
Sbjct: 19 MPLTILVVDDDLGTRLSISDYLELSGYSVITANDGQEALTMVEVYHPDLIVTDIVMPRMN 78
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL RR + P L V+ +T L KPF L +L ++ LL
Sbjct: 79 GYELVRRVRQQPPFRLLPVILLTARTRTQERILGYQSGCDLYLPKPFELEELAAAIHNLL 138
Query: 119 TI 120
Sbjct: 139 ER 140
>gi|332703870|ref|ZP_08423958.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
gi|332554019|gb|EGJ51063.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio africanus str. Walvis Bay]
Length = 459
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D++ +R L L G+EV+ +G + V + L+ DI +P MD
Sbjct: 1 MSARILIIDDEESIRFSLRGVLEDEGHEVIEAGSGEQGLEMVENQGPDLVFLDIWLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ + + E D+ V+ I+G V + + KP L +V VN+ L
Sbjct: 61 GLHVLEKVREGQVDVPVIMISGHGNVETAVSAIKKGAFDFIEKPLSLEKVVITVNKALE 119
>gi|329925047|ref|ZP_08279991.1| heme response regulator HssR [Paenibacillus sp. HGF5]
gi|328940166|gb|EGG36498.1| heme response regulator HssR [Paenibacillus sp. HGF5]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD +R L L GY V++ ++G A + EE L + D++MP DG +
Sbjct: 3 HILIADDDAHIRELLQYHLQTEGYTVLTASDGEEASVLLAEEQVHLAVVDVMMPNKDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D+ V+ +T + A L+KPF R+L+ + LL
Sbjct: 63 LCEEIR-RYYDVPVILLTAKDQLVDKERGFAVGTDDYLTKPFEPRELLFRIKALLRR 118
>gi|302391640|ref|YP_003827460.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
gi|302203717|gb|ADL12395.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++ + L + GYEV NG A KV + L++ DI++P +DG E
Sbjct: 5 HILVVDDEKNILELVKYNLIQEGYEVSLAINGEKALKKVDDIAPDLIILDIMLPGLDGFE 64
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E++ + ++F++ + V L+KPF R+L + V +
Sbjct: 65 VCHCLQEMEKTEGIPIIFLSAKSEVEDKVKGLNLGATDYLTKPFSPRELASRVKAVSRR 123
>gi|262282112|ref|ZP_06059881.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
gi|262262566|gb|EEY81263.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + R ++ AL GY+V S NG A + + +++++ DI+MP M G+E
Sbjct: 3 RILLAEDEAQLNRVILAALEHDGYQVDSVFNGQEALNLANQNTYNVIILDIMMPIMTGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T A V L+KPF L++L+ + +
Sbjct: 63 ALKEIRATGNTTHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSMARR 119
>gi|229012628|ref|ZP_04169801.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
gi|228748651|gb|EEL98503.1| DNA-binding response regulator [Bacillus mycoides DSM 2048]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A L++ DI+MP MDG
Sbjct: 12 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 72 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128
>gi|218439703|ref|YP_002378032.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218172431|gb|ACK71164.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 799
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD ++ + +AL Y V +G + + + L++ D+++P++DGI+
Sbjct: 2 KLLLVEDDQNLAEVIKEALKSQHYLVELATDGQTGLELAEMFEYDLIMLDLMLPKLDGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ +TG + + L KPF++++L+ V LL
Sbjct: 62 FCQQRRKKGDLTPILLVTGQDDASCKVKALDAGADDYLVKPFNIQELLARVRALLRR 118
Score = 115 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KI++ +DD ++ + + L G+ + + +D + LL+ D+ MPE+ G
Sbjct: 497 TAKIMIVDDDPNLLKLIQFHLEPWGFSITLLEDPKLFWDILERTTPDLLILDVEMPEISG 556
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
IEL + L ++F++G + + KP +LV +
Sbjct: 557 IELCQVVRNDPHWHHLPILFLSGHRESKFVSEGFQAGADDYIYKPIVDSELVTRI 611
Score = 70.9 bits (174), Expect = 5e-11, Method: Composition-based stats.
Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 2/115 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD- 60
N +L+ ++D + + ++ G + A A + + ++L D+ P+ +
Sbjct: 372 NHHLLIVDNDFILVQSIVNQAKLWGLIPQVATDIAQAKEAIARSRPDVILLDMGFPDREE 431
Query: 61 -GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+EL + +L P + + + ++ L KP ++ +
Sbjct: 432 ICLELLKDIRQLIPPIPTVITSDQNNFSVRVKVARLGAVGFLQKPLPPERIIETI 486
>gi|220926004|ref|YP_002501306.1| winged helix family two component transcriptional regulator
[Methylobacterium nodulans ORS 2060]
gi|219950611|gb|ACL61003.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 222
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + R + L +AGY V +G A+ + E + L + D+ +P+MDG+
Sbjct: 2 RILLVEDDPRVARKVAAVLTEAGYAVDHVEDGEEAWFRGDTEDYDLAVLDLGLPKMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R DL V+ +T A A + L+KPF + +L+ V LL
Sbjct: 62 VLKRWRAAGRDLPVLILTARGAWAERVEGIDAGADDYLTKPFAMEELLARVRALLRR 118
>gi|218780373|ref|YP_002431691.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
gi|218761757|gb|ACL04223.1| Two-component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
Length = 463
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +++L+ +D+ DM L ++L V + +G A + + +E F L+L DI MP+M
Sbjct: 1 MKRRLLIVDDEPDMLHLLKRSLEPDLNCVVETAASGLEAMEILGQERFDLILADIKMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+EL + PD ++ +TG ++ + + ++KPF LV + + L
Sbjct: 61 DGLELLEKVQAQYPDQTMVMMTGHGSIDVAVQAIQKGAYDFVTKPFDHEALVVRLEKALE 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|111220435|ref|YP_711229.1| two-component regulatory system response regulator [Frankia alni
ACN14a]
gi|111147967|emb|CAJ59633.1| response regulator in two-component regulatory system with PhoR,
regulation of Pi uptake (OmpR family) [Frankia alni
ACN14a]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L + G+EV +G SA + L+L D+++P +
Sbjct: 1 MT-RLLVVEDEESFSDALSFMLEREGFEVGVVADGPSALAEFDRRGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRTLR-TRSSVPIIMLTARDSEIDKVLGLELGADDYVTKPFSARELVARIRAVLRR 118
Query: 121 KN 122
++
Sbjct: 119 RS 120
>gi|186685580|ref|YP_001868776.1| response regulator receiver modulated translation initiation factor
IF-2 [Nostoc punctiforme PCC 73102]
gi|186468032|gb|ACC83833.1| response regulator receiver modulated translation initiation factor
IF-2 [Nostoc punctiforme PCC 73102]
Length = 522
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GY++ +G +A V+E P L++ D+ MPEMDG E
Sbjct: 258 RILAVDDVADNLILIQTVLESEGYQIDLAADGTTALSLVKESPPDLIILDVKMPEMDGYE 317
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR P + ++ I+ + A + KP + +L+ V LL +K
Sbjct: 318 VTRRIRNNHNLPYIPILLISAY-FEASVVQGLDIGANDFIRKPIDVDELLARVRSLLRLK 376
>gi|332885780|gb|EGK06026.1| hypothetical protein HMPREF9456_02290 [Dysgonomonas mossii DSM 22836]
Length = 1335
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 4/123 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D++++R FL + LG+ ++V++ +G + L+++D++MP MDG
Sbjct: 1076 NYKILIIDDEEEIRDFLSQELGEL-FKVITAVDGVDGLQVAIDRLPDLIISDVMMPNMDG 1134
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-L 118
+ L +R + + ++ +T A LSKPF++ +L+ +N L L
Sbjct: 1135 LNLLKRLKNNNNVSHIPIILLTSKAEYQDRIQGLDRGADAYLSKPFNIEELIVTINNLIL 1194
Query: 119 TIK 121
+
Sbjct: 1195 NRR 1197
>gi|325288683|ref|YP_004264864.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324964084|gb|ADY54863.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
KIL+A+D+ MR + L + +EV + +G A ++ E+ FSL + D++MP MDG
Sbjct: 7 KILVADDEPKMRELIALYLKRENFEVTAVEDGMKALAELEEKGDVFSLFMIDVMMPNMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R D V+FIT + KPF R++ V +L
Sbjct: 67 FALCREIRS-FSDKPVIFITAKGEEYERLMGFELGADDYIVKPFSPREMTARVKAVLKRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|229061003|ref|ZP_04198357.1| DNA-binding response regulator [Bacillus cereus AH603]
gi|228718372|gb|EEL70006.1| DNA-binding response regulator [Bacillus cereus AH603]
Length = 236
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A L++ DI+MP MDG
Sbjct: 15 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 75 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 131
>gi|226227765|ref|YP_002761871.1| phosphate regulon transcriptional regulatory protein PhoB
[Gemmatimonas aurantiaca T-27]
gi|226090956|dbj|BAH39401.1| phosphate regulon transcriptional regulatory protein PhoB
[Gemmatimonas aurantiaca T-27]
Length = 239
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++ + L KAGY V + +G+ A + R E SL++ D+++P M G +
Sbjct: 10 RILVVDDEPEIVALVAYHLAKAGYRVATAASGSDALEVARRERPSLIVLDLMLPGMSGFD 69
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ +T + L+KPF +LV V +L
Sbjct: 70 VLEQLRADESTREVAVLMLTARREEPDRIRGLSLGADDYLTKPFSPAELVLRVGAILRR 128
>gi|156936560|ref|YP_001440474.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
BAA-894]
gi|156534814|gb|ABU79638.1| hypothetical protein ESA_pESA3p05441 [Cronobacter sakazakii ATCC
BAA-894]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ EDD D L L + Y+V +G S +K + L+L D+++P M+G
Sbjct: 3 TKRVLVIEDDADAASVLEAYLRRENYDVAIAGDGRSGLEKAQRWKPDLVLLDVMLPVMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D+ V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLATLR-RSSDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120
>gi|148379930|ref|YP_001254471.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153931088|ref|YP_001384228.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153937795|ref|YP_001387768.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148289414|emb|CAL83510.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152927132|gb|ABS32632.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152933709|gb|ABS39208.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 221
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSMPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|148556479|ref|YP_001264061.1| two component transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148501669|gb|ABQ69923.1| two component transcriptional regulator, winged helix family
[Sphingomonas wittichii RW1]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++LL EDD + + L + +EV +G A RE P L+L D ++ +
Sbjct: 1 MARARVLLVEDDAALAELVSWHLEREDFEVERTADGEEAILLARETPPDLVLLDWMIEGV 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR L ++ ++ +T ++KPF R+LV V +
Sbjct: 61 SGIEVCRRLRRLADTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|115375378|ref|ZP_01462640.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115367580|gb|EAU66553.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 1358
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILLA+D+ D+R ++ + L G+ V + +G +A + + P L+LTD++MP +DG
Sbjct: 686 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 745
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R E + V+ ++ A + L KPF ++LV+ V L
Sbjct: 746 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLE 805
Query: 120 I 120
I
Sbjct: 806 I 806
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+ILL ED D+R L L + G+EV + +G +++ + L D+ +P +DG
Sbjct: 1210 KQRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDG 1269
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
E+ARR L ++ +TG+ + L+KP ++ +L
Sbjct: 1270 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDEL 1320
>gi|150018594|ref|YP_001310848.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149905059|gb|ABR35892.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K IL+ +D+ D+R + L +EV++ +G A +K++ E L++ DI+MP+
Sbjct: 1 MEKKKSILVVDDEKDIREVIEIYLINEEFEVITACDGLEALEKLKNEAIDLIILDIMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DGI + E + ++ ++ + + + KPF+ +LV V +
Sbjct: 61 LDGIRTCLKIREEKK-MPIIMLSAKSEDSDKILGLNIGADDYVVKPFNPLELVARVKSQI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|332705121|ref|ZP_08425203.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
gi|332356071|gb|EGJ35529.1| two-component response regulator, CheY subfamily [Lyngbya majuscula
3L]
Length = 276
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + +AL AG+ V +G SA ++V L+L D++MP +DG E
Sbjct: 10 ILVVDDTPTNLSVISQALHNAGFTVAVETDGESAIEQVNYNQPDLILLDVMMPGIDGFET 69
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R + D+ V+F+T + ++KPF +++ V L +++
Sbjct: 70 CKRLKANPSNRDIPVIFMTALTDTVDQVKGLSIGAVDYITKPFQQDEVLARVRIHLQLRH 129
>gi|330503204|ref|YP_004380073.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328917490|gb|AEB58321.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 227
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L G+ V +G S + L++ DI++P +DG +
Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ ++ +T A+ L KPF L +LV + +L
Sbjct: 62 VCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119
>gi|325568329|ref|ZP_08144696.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
gi|325158098|gb|EGC70251.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC
12755]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL ED+ + + L K Y V +G + D + +L+ DI++P++DGI
Sbjct: 2 RILFVEDEPSIAEAVASLLKKQHYSVDLAYDGETGLDYAASGVYDILVLDIMLPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + V L+KPF +++L+ + L K+
Sbjct: 62 LLKTLRKQNIRTPIIMLTAKSEVDDKVLGLDAGADDYLTKPFQMKELLARIRSLGRRKD 120
>gi|307298880|ref|ZP_07578682.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306915305|gb|EFN45690.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + + L + G+ V + + D E + ++ D+++P M G E
Sbjct: 2 KLLVVEDEKKLLENVAAFLERKGFLVDTAQDAEDGLDLALERNYDCIILDVILPGMGGYE 61
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E+ D+ ++ IT + + L KPF LR+L V L+
Sbjct: 62 FCRFLREEIGSDVPIIIITALGEIDSRIEGLKIGADDYLPKPFDLRELEARVRALIRR 119
>gi|301163263|emb|CBW22813.1| putative two component system response regulator [Bacteroides
fragilis 638R]
Length = 224
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ F+ + L + G+ V N+G + ++ +R+E F LL+ DI+MP+M+G+E
Sbjct: 3 KILLVEDEVNIASFIERGLKEFGHSVSVANDGDAGWEFIRQEAFDLLILDIIMPKMNGLE 62
Query: 64 LARRATELDPD-LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L KPF ++L + +L
Sbjct: 63 LCRLYRQQYGYLTPVIMLTALGTTEDIVKGLDSGADDYLVKPFSFQELEARIKAILRR 120
>gi|228943430|ref|ZP_04105874.1| DNA-binding response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228976315|ref|ZP_04136786.1| DNA-binding response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228783419|gb|EEM31527.1| DNA-binding response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228816210|gb|EEM62391.1| DNA-binding response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A + L++ DI+MP MDG
Sbjct: 12 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISKNIDLVVLDIMMPIMDGWT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 72 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128
>gi|228989436|ref|ZP_04149424.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228770307|gb|EEM18883.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +GA + + L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRDLITIYLKNEGYKVLQAEDGAEGLYILEKNEVHLVVLDIMMPKIDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKIREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELMARIKSQLRR 120
>gi|206972693|ref|ZP_03233632.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|229068014|ref|ZP_04201325.1| Two-component response regulator [Bacillus cereus F65185]
gi|229077615|ref|ZP_04210248.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|206732379|gb|EDZ49562.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228705695|gb|EEL58048.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228715117|gb|EEL66981.1| Two-component response regulator [Bacillus cereus F65185]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|162146556|ref|YP_001601015.1| two-component response regulator [Gluconacetobacter diazotrophicus
PAl 5]
gi|209543446|ref|YP_002275675.1| winged helix family two component transcriptional regulator
[Gluconacetobacter diazotrophicus PAl 5]
gi|161785131|emb|CAP54676.1| putative two-component response regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531123|gb|ACI51060.1| two component transcriptional regulator, winged helix family
[Gluconacetobacter diazotrophicus PAl 5]
Length = 239
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L + + V + +G + +++ D+++P G+E
Sbjct: 6 HILIVDDDREIRDLLARFLERNQFRVTTARDGRETRKAWLAGHYQIVVLDLMLPGESGLE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
LAR ++ ++ +T + KPF+ R+L+ + +L +
Sbjct: 66 LARWLRGQ-ANVPIIMLTAMGEETDRIIGLELGADDYVPKPFNPRELLARIRAVLRRSS 123
>gi|159897434|ref|YP_001543681.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159890473|gb|ABX03553.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 238
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED D+ L++ L GY+V +G +A ++ L++ D ++P++DG+E
Sbjct: 7 TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + L+KPF +R+L+ V LL
Sbjct: 67 VLRTIRQ-TKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRR 122
>gi|62183003|ref|YP_219420.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|62130636|gb|AAX68339.1| response regulator in two-component regulatory system with CreC
(OmpR family) [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|322717510|gb|EFZ09081.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|16767829|ref|NP_463444.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167989832|ref|ZP_02570932.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168262357|ref|ZP_02684330.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|194444693|ref|YP_002043830.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197265197|ref|ZP_03165271.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|16423155|gb|AAL23403.1| response regulator in two-component regulatory system with CreC
[Salmonella enterica subsp. enterica serovar Typhimurium
str. LT2]
gi|194403356|gb|ACF63578.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197243452|gb|EDY26072.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205331389|gb|EDZ18153.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205348945|gb|EDZ35576.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|261249668|emb|CBG27539.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267996952|gb|ACY91837.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301161067|emb|CBW20604.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312915682|dbj|BAJ39656.1| response regulator CreB [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222443|gb|EFX47515.1| Two-component response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323132929|gb|ADX20359.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332991394|gb|AEF10377.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|304407940|ref|ZP_07389590.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342959|gb|EFM08803.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 3/124 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ + IL+ +DD + L L ++V++ + A A ++ P ++ D++MP
Sbjct: 1 MSEWRTILVVDDDPSIVELLRDFLEYESFQVLTACDAAQALALFQQHPVHGIVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G EL R + ++F++ + K ++V V +L
Sbjct: 61 QNGFELCRTIRS-SSSVPILFLSARGEDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVL 119
Query: 119 TIKN 122
+
Sbjct: 120 RRSS 123
>gi|288918083|ref|ZP_06412440.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
gi|288350465|gb|EFC84685.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
Length = 267
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +D+ + L AL G+EV + +G A R+ ++ DI++P+MDG
Sbjct: 41 SPRILVVDDESTLSELLSMALRYEGWEVQTAPDGRGALKVARDFRPDAVVLDIMLPDMDG 100
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+E+ R+ PD+ V+F+T AV ++KPF L +
Sbjct: 101 LEVLRKLRAESPDVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEE 148
>gi|240146794|ref|ZP_04745395.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|257201080|gb|EEU99364.1| regulatory protein VanR [Roseburia intestinalis L1-82]
Length = 237
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +D+ ++ + L Y V SA + + E L + D+++P++D
Sbjct: 1 MSYKVLVVDDESEIADLIEMYLQNENYTVYKSYTAQSALEYIESEKLDLAILDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T ++KPF L+ V L
Sbjct: 61 GFQICKKIREKY-TYPVIMLTAKDGEVDTITGLTLGADDYVTKPFKPLALMARVKAQLRR 119
>gi|198241940|ref|YP_002218459.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197936456|gb|ACH73789.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|326626267|gb|EGE32612.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEKGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|330873088|gb|EGH07237.1| sensory box protein/response regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 705
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GYE ++ +G A V E L+L DI+MP
Sbjct: 1 MTQPAATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + LSKP +L V
Sbjct: 61 GMDGYEVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|323704512|ref|ZP_08116090.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323535974|gb|EGB25747.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 231
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ L +L + G V++ NG +K +E L++ DI+MP++D
Sbjct: 1 MS-KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++F++ + A + KPF L++L+ ++ L
Sbjct: 59 GYEVCRKIRDTVI-CPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|229115399|ref|ZP_04244806.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
gi|228668013|gb|EEL23448.1| Two-component response regulator vanR [Bacillus cereus Rock1-3]
Length = 243
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ +F+ L + + V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 17 ILIVDDDLDIVQFINVNLTQEDFTVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 77 CRRIREKYS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 131
>gi|170768541|ref|ZP_02902994.1| transcriptional regulatory protein CreB [Escherichia albertii
TW07627]
gi|170122645|gb|EDS91576.1| transcriptional regulatory protein CreB [Escherichia albertii
TW07627]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++
Sbjct: 1 MKRETVWLVEDEQGIADTLVYMLQQEGFSVDVFERGLPVLDKARQQAPDVIILDVGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL R+ + P L V+F+T + ++KPF R++ V LL
Sbjct: 61 SGFELCRQLLAIHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|168183301|ref|ZP_02617965.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237793939|ref|YP_002861491.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182673496|gb|EDT85457.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229261920|gb|ACQ52953.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLTNEGYNVFKARYGKEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA + + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRARQKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELAVRIRALLRR 119
>gi|119953537|ref|YP_945747.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae
91E135]
gi|119862308|gb|AAX18076.1| acetoacetate metabolism regulatory protein AtoC [Borrelia turicatae
91E135]
Length = 456
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 64/122 (52%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+A+D+ ++R + L + GY V + ++G A + ++ E +++D+ MP++
Sbjct: 1 MS-KLLVADDEKNIREGIATYLEEEGYFVFTASDGKEALETIKNEKIDAIISDLRMPQIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + +P++ + +T V D+ L+KP L L+ + R L
Sbjct: 60 GEELLKIVKDKNPNIPFIILTAHGTVDSAVDAMREGAYDFLTKPVDLERLLLIIKRALNG 119
Query: 121 KN 122
KN
Sbjct: 120 KN 121
>gi|91215802|ref|ZP_01252772.1| two component transcriptional regulator, winged helix family
protein [Psychroflexus torquis ATCC 700755]
gi|91186268|gb|EAS72641.1| two component transcriptional regulator, winged helix family
protein [Psychroflexus torquis ATCC 700755]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ IL+AED D+ + L K L + GY+ + NG V+ SL+L D +MP
Sbjct: 1 MNKGNYTILIAEDQVDIAKLLKKGLTEEGYQCLVVKNGEEVLKLVKHNSISLILLDWMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ GI++ ++ ++F+T + + + KPF+ +L+ +
Sbjct: 61 KLKGIDVCKQLRSEHISTPIIFLTAKDTIEDTIEGLKSGANDYIKKPFNFEELLARIETH 120
Query: 118 LTI 120
L +
Sbjct: 121 LRL 123
>gi|16264749|ref|NP_437541.1| putative two component response regulator protein [Sinorhizobium
meliloti 1021]
gi|15140887|emb|CAC49401.1| putative two-component response regulator [Sinorhizobium meliloti
1021]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +DD + L L GY V + + ++ +++ D+++P+ D
Sbjct: 1 MAERVLIVDDDTRLSAMLSDYLSGNGYTVHTAATATAGIAELGHRTPDVVILDVMLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR + D+ V+ +T L KPF+ R+L+ + +L
Sbjct: 61 GFETCRRIRAV-SDVPVLMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRR 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|328956718|ref|YP_004374104.1| two-component response regulator [Carnobacterium sp. 17-4]
gi|328673042|gb|AEB29088.1| two-component response regulator [Carnobacterium sp. 17-4]
Length = 241
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY+V + +G Y+ P+ ++ D+++P M G+
Sbjct: 2 KKVLIVDDEQSILTLLAFNLEKEGYQVDTALDGLEGYEMAVAHPYDFIILDLMLPSMGGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ + + +M +T ++KPF R+++ + ++
Sbjct: 62 DICKKLRQEKIEAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRR 119
>gi|288925297|ref|ZP_06419232.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Prevotella buccae D17]
gi|288338062|gb|EFC76413.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Prevotella buccae D17]
Length = 1340
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD DM FL GY VV+ NGA ++++E SL+++D +MP MDG E
Sbjct: 1096 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1154
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ +T + + KPF ++ L + +L ++
Sbjct: 1155 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDMR 1214
>gi|229159651|ref|ZP_04287662.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623802|gb|EEK80617.1| Two-component response regulator [Bacillus cereus R309803]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV NG + + +L D++MPEMDG
Sbjct: 5 NMRLLVVEDNASLLESIVQILRDE-FEVDMALNGEDGLFLALQNIYDAILLDVMMPEMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRNEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|254510565|ref|ZP_05122632.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
gi|221534276|gb|EEE37264.1| DNA-binding response regulator [Rhodobacteraceae bacterium KLH11]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ EDD D R F+ K G+ GY V +G + F ++ D ++P +D
Sbjct: 1 MSRRLLIVEDDQDTRDFIAKGFGEEGYVVEVAADGREGLYHATDGGFDAIVLDRMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + V+ +T +AV L KPF ++L + LL
Sbjct: 61 GLSLIKSMRAAGLKTPVLMLTAMSAVDERVKGLRAGADDYLVKPFSFQELHARIEALLRR 120
>gi|241205712|ref|YP_002976808.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240859602|gb|ACS57269.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GI+
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGID 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|124006367|ref|ZP_01691201.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
marina ATCC 23134]
gi|123988024|gb|EAY27695.1| transcriptional regulator, NifA subfamily, Fis Family [Microscilla
marina ATCC 23134]
Length = 490
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D + +++ L + GY+ + +G SA ++V L+L D++MP +DG E
Sbjct: 11 KILVVDDTPANIKLMVEHLSQEGYKTLVAEDGESAIEQVAFVKPDLILLDVMMPGIDGFE 70
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E D D+ ++F+T + + + ++KP +++++ V+ LTI+
Sbjct: 71 TCHRLKEDDSTKDIPIIFMTALSDTENKVKAFSMGAVDYVTKPIQHKEVLSRVSAHLTIR 130
>gi|110799967|ref|YP_697175.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|110674614|gb|ABG83601.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD+++ + L GY V +G +A ++ +L++ D+++P +DG+E
Sbjct: 7 KILIVDDDENICEVIKMYLETTGYNVKVDQDGKAAKEEFVNFSPNLVVLDMILPGIDGME 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D ++ V+ +T + + KPF ++L+ V ++
Sbjct: 67 VLKWIRK-DSNVPVIMLTAKGETFDKVLALEIGADDYVVKPFEPKELLARVKAVMRR 122
>gi|116492482|ref|YP_804217.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745]
gi|116102632|gb|ABJ67775.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Pediococcus pentosaceus ATCC 25745]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + RF+ L GYEV +NG + + E F +L D+++PE++
Sbjct: 1 MS-RILIIEDEKSLARFVQLELQHEGYEVEVQSNGRTGLEAALSEDFDAILLDLMLPEIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR ++ +T ++ + KPF + +L+ + +L
Sbjct: 60 GIEVCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|317056870|ref|YP_004105337.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315449139|gb|ADU22703.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
+++L+ ED+D +R F++ L ++GYEVV N G A E F + L DI+MP +D
Sbjct: 2 KRVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGGFDVALLDIMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ E + + ++ ++ + ++KPF + +L+ V+ +
Sbjct: 62 GMQVCKKIREKNNSVGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRR 121
Query: 121 KN 122
N
Sbjct: 122 VN 123
>gi|260466893|ref|ZP_05813076.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
gi|259029289|gb|EEW30582.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
Length = 243
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L G+ V + K+ F L++ D+++P+ G++
Sbjct: 7 HILVVDDDREIRTLLGRYLDGQGFRVSVAADRRECEQKLGLGQFDLIVLDVMLPDGSGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + P + V+ +T L KPF+ R+L + +L
Sbjct: 67 ICRALRDRKPHIPVILLTALKEDVDRIIGLELGADDYLGKPFNPRELTARIRAVLRR 123
>gi|228917725|ref|ZP_04081266.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228841962|gb|EEM87068.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ I++ +D+ ++R + L GY V+ NG + +++ L++ DI+MP++
Sbjct: 1 MSKETIMVVDDEKEIRELIAIYLKNEGYRVLQAENGEEGLELLKKNEVHLIVLDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|281419815|ref|ZP_06250814.1| DNA-binding response regulator TrcR [Prevotella copri DSM 18205]
gi|281406115|gb|EFB36795.1| DNA-binding response regulator TrcR [Prevotella copri DSM 18205]
Length = 243
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +LL ED+ + L L G+E+ + +G E+ +L+ D++MP+M
Sbjct: 1 MNKINVLLVEDETSLAMILSDILEAQGFEMRTARDGEEGLRMFDEQKPDVLVADVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +AV + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRKTDSRTPVLFLTARSAVNDVVEGFELGGNDYLKKPFAIQELIVRIKSL 118
>gi|255616226|ref|XP_002539738.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
gi|223502939|gb|EEF22645.1| two-component system sensor histidine kinase/response regulator,
putative [Ricinus communis]
Length = 185
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ L + +AG+ + + A +RE L+L D ++P M GIE
Sbjct: 6 ILVVEDEPAIQELLALNIKQAGHHAIRATSVEHAQMLLRETMPDLILLDWMLPGMSGIEF 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
ARR L ++ ++ +T ++KPF R+L + +L +
Sbjct: 66 ARRLKSDSLTKEVPIIMLTARGDEFDKVRGLEVGADDYVTKPFSPRELNARIKAVLRRR 124
>gi|119486072|ref|ZP_01620134.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
8106]
gi|119456847|gb|EAW37975.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
8106]
Length = 582
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 2/114 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD ++ + L ++V+ +G S +K L+L DI+MP+MDG E
Sbjct: 3 KILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASSPDLILCDIMMPQMDGFE 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ E ++ +F+T + L+KPF ++L+ +
Sbjct: 63 VLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQ 116
>gi|108805570|ref|YP_645507.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108766813|gb|ABG05695.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 241
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD+ + L L + G+EV A R+ L+L DI++P GI +
Sbjct: 8 ILIVEDDEVIMGTLAYNLARQGFEVSRATTAAEGLRMARKLRPDLILLDIMLPGESGIRV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R E D D+ ++ IT A ++KPF +++LV ++ L +
Sbjct: 68 CQRIREEDEDVVIIMITAKDAEEDKVRGFEAGADDYVTKPFGMKELVARIHAHLKRSD 125
>gi|332366691|gb|EGJ44433.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
Length = 237
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD
Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSIDLIITDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 125
>gi|302392661|ref|YP_003828481.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
gi|302204738|gb|ADL13416.1| two component transcriptional regulator, winged helix family
[Acetohalobium arabaticum DSM 5501]
Length = 227
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + RFL L GYEV + NG + + E F L+L DI++P + G+E+
Sbjct: 6 VLIIEDEEKIARFLELELEHEGYEVEAVYNGEEGLEAIIEGDFDLVLLDIMLPGLSGMEI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++ ++ +T ++KPF + +L+ + +L
Sbjct: 66 CRRVRKE-SEIPIIMLTAKDDTTDKVMGLDLGAHDYITKPFAIEELLARMRGVLRR 120
>gi|229163664|ref|ZP_04291612.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
gi|228619801|gb|EEK76679.1| hypothetical protein bcere0009_44300 [Bacillus cereus R309803]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G + + +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|296138387|ref|YP_003645630.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
gi|296026521|gb|ADG77291.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED++ + L L K G+E +GA A ++L D+++P M
Sbjct: 1 MT-HVLIVEDEESLADPLAFLLRKEGFETTVVTDGAEALRHFDSAGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|168234721|ref|ZP_02659779.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194737123|ref|YP_002117499.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|194712625|gb|ACF91846.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197291892|gb|EDY31242.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|59713364|ref|YP_206139.1| transcriptional regulator SyrB [Vibrio fischeri ES114]
gi|59481612|gb|AAW87251.1| probable transcriptional regulator SyrB [Vibrio fischeri ES114]
Length = 221
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD ++ L + L GY+V + G SA + ++ L+L D+++P++D
Sbjct: 1 MS-RILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ARR + ++ +T A D ++KPF++ +L+ + +L
Sbjct: 60 GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118
>gi|294668444|ref|ZP_06733544.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309597|gb|EFE50840.1| hypothetical protein NEIELOOT_00359 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + +L +A + A + E F LLL D+ +P+ D
Sbjct: 7 MNPHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + P V+ +T + KPF R+LV V +L
Sbjct: 67 GFELLKTLRPQHPQ-PVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRR 125
>gi|290957456|ref|YP_003488638.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260646982|emb|CBG70081.1| putative two-component system response regulator [Streptomyces
scabiei 87.22]
Length = 245
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D LL+ DI++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFVVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|291287959|ref|YP_003504775.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
gi|290885119|gb|ADD68819.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
Length = 233
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ +DD + R L K L + Y V S N A + + + S+++ D++MP ++
Sbjct: 1 MKTRIMIIDDDSKLNRMLNKYLSQYAYIVDSYTNPLEAIEALENDEPSIIILDVMMPHIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E +R ++ D+ ++ +T V+ +SKPF R+LV ++ +L
Sbjct: 61 GFETCKRIRKI-SDVPIIMLTARGDVSDRIAGLESGVDDYMSKPFEPRELVARISAILKR 119
>gi|210617395|ref|ZP_03291559.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
gi|210149325|gb|EEA80334.1| hypothetical protein CLONEX_03781 [Clostridium nexile DSM 1787]
Length = 246
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E
Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + KV+ ++ + +A + + KPFHL++L V L K
Sbjct: 82 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139
>gi|257062143|ref|YP_003140031.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanothece sp. PCC 8802]
gi|256592309|gb|ACV03196.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Cyanothece sp. PCC 8802]
Length = 1514
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + L Y V + +G +A + ++++ LLLTDI+MP ++G+
Sbjct: 649 RILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPRLNGLA 707
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ DL ++ ++ A + K L KPF R+L+ V L +
Sbjct: 708 LLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSSRELLARVEACLKM 766
>gi|188588940|ref|YP_001919844.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum E3 str. Alaska E43]
gi|188499221|gb|ACD52357.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum E3 str. Alaska E43]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED++ +R F+ L + +EV+ G + L + D+++P +DG
Sbjct: 2 RRILLVEDEESIRGFIKINLKRNDFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + P + ++ +T + KPF+ +L+ + +L
Sbjct: 62 KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRR 119
>gi|161617899|ref|YP_001591864.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552188|ref|ZP_02345941.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168244512|ref|ZP_02669444.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168464491|ref|ZP_02698394.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168822129|ref|ZP_02834129.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|197250807|ref|YP_002149531.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200388855|ref|ZP_03215467.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|207859709|ref|YP_002246360.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|238910747|ref|ZP_04654584.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|161367263|gb|ABX71031.1| hypothetical protein SPAB_05766 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195632962|gb|EDX51416.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197214510|gb|ACH51907.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|199605953|gb|EDZ04498.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205323116|gb|EDZ10955.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205336622|gb|EDZ23386.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205341383|gb|EDZ28147.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|206711512|emb|CAR35897.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|320089017|emb|CBY98773.1| Response regulator mprA Mycobacterial persistence regulator A
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|328954298|ref|YP_004371632.1| two component transcriptional regulator, winged helix family
[Desulfobacca acetoxidans DSM 11109]
gi|328454622|gb|AEB10451.1| two component transcriptional regulator, winged helix family
[Desulfobacca acetoxidans DSM 11109]
Length = 228
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D++D+ + L K GY V + G A L+L D+++P +DG
Sbjct: 3 KEHILVVDDEEDILELVRYNLTKEGYRVTAVATGEEALRTAHSIHPELILLDLMLPGVDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
+E+ R+ + + ++ ++ A A ++KPF R L+
Sbjct: 63 LEVCRKLKQDPKTSHVPIIMLSAKGEEADIVTGLELGAADYVTKPFSPRVLI 114
>gi|325841247|ref|ZP_08167348.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
gi|325489928|gb|EGC92275.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+A+D+ D+R+ L L GYEVV+ NG A + + +E L++ D+ MP+
Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELM-DESIGLVILDVEMPKKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + + ++F+T + + + ++KPF DL+ V LL
Sbjct: 60 GIVVCSEIRQK-SFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRR 118
>gi|311029649|ref|ZP_07707739.1| two component transcriptional regulator, winged helix family
protein [Bacillus sp. m3-13]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + L K GY V N+G A + + + L + D++MP +G EL
Sbjct: 4 ILVADDDLFIRELIAIYLKKEGYTVFEANDGVEATNILSQRTVHLCIIDVMMPNKNGWEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ EL DL ++ +T + KPF +L+ V LL
Sbjct: 64 CKEIRELY-DLPILMVTAKGESEDKVKGFQQGTDDYIVKPFDTHELIMRVKALLRR 118
>gi|309790146|ref|ZP_07684718.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308227731|gb|EFO81387.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 245
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+A+DD + + L YE+++ NG A ++PF +++ D++MP +DG
Sbjct: 19 RRILIADDDPSIAALIQVTLKDPRYEIIAVANGLEALKAFEKQPFDVVILDVMMPYVDGF 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R D+ ++ +T ++KPF +L+ V +L
Sbjct: 79 EACERIRAQ-SDVPIVILTSRDGTEDVVHGFELGADDYITKPFKTVELIARVESILRR 135
>gi|229012406|ref|ZP_04169582.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229060799|ref|ZP_04198154.1| Two-component response regulator [Bacillus cereus AH603]
gi|229134050|ref|ZP_04262870.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|229170828|ref|ZP_04298442.1| Two-component response regulator [Bacillus cereus AH621]
gi|228612666|gb|EEK69875.1| Two-component response regulator [Bacillus cereus AH621]
gi|228649385|gb|EEL05400.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228718446|gb|EEL70078.1| Two-component response regulator [Bacillus cereus AH603]
gi|228748857|gb|EEL98706.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|187929100|ref|YP_001899587.1| winged helix family two component transcriptional regulator
[Ralstonia pickettii 12J]
gi|241663308|ref|YP_002981668.1| two component transcriptional regulator PhoB [Ralstonia pickettii
12D]
gi|309782477|ref|ZP_07677201.1| phosphate regulon transcriptional regulatory protein PhoB
[Ralstonia sp. 5_7_47FAA]
gi|187725990|gb|ACD27155.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12J]
gi|240865335|gb|ACS62996.1| two component transcriptional regulator PhoB, winged helix family
[Ralstonia pickettii 12D]
gi|308918814|gb|EFP64487.1| phosphate regulon transcriptional regulatory protein PhoB
[Ralstonia sp. 5_7_47FAA]
Length = 237
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ A+ E + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDSGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|116624116|ref|YP_826272.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116227278|gb|ABJ85987.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 224
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L G+E +G SA + R L++ D ++P +DG E
Sbjct: 3 RILVVEDDQRTAESIKLYLEHDGFEARLAADGLSALELCRTTAPDLVILDRMLPLVDGAE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR ++ ++ +T A + ++KPF R+LV V+ +L
Sbjct: 63 ICRRLRAAG-NIPIIMLTARTTEADKLEGLRLGADDYVTKPFSPRELVARVHAVL 116
>gi|19554154|ref|NP_602156.1| two-component system, response regulator [Corynebacterium
glutamicum ATCC 13032]
gi|62391809|ref|YP_227211.1| two component response regulator [Corynebacterium glutamicum ATCC
13032]
gi|41327151|emb|CAF20995.1| putative two component response regulator [Corynebacterium
glutamicum ATCC 13032]
Length = 240
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129
>gi|65319271|ref|ZP_00392230.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R + L G++ +G A K+ + +++ DI+MP MDG ++
Sbjct: 14 ILIVDDDPHIRELVSVFLECEGFQTYEAIDGLDALQKINQVKVDMVILDIMMPNMDGFDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 74 CFELRKYY-DIPILILTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 128
>gi|237719712|ref|ZP_04550193.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229450981|gb|EEO56772.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1379
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++++ + ++K L + Y V NG + E L+++D++MPEMDGIE
Sbjct: 1128 ILVVEDNEELLQLMVKLLSRE-YNVFKAENGKEGVTILENEDIDLIVSDVMMPEMDGIEF 1186
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T ++ ++KPF+L L + LL K
Sbjct: 1187 CKYVKGNLEISHIPVILLTAKNKEEDRAEAYEVGADAFIAKPFNLAVLHARIRNLLKYK 1245
>gi|229020479|ref|ZP_04177229.1| DNA-binding response regulator [Bacillus cereus AH1273]
gi|229026706|ref|ZP_04183046.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228734600|gb|EEL85254.1| DNA-binding response regulator [Bacillus cereus AH1272]
gi|228740814|gb|EEL91062.1| DNA-binding response regulator [Bacillus cereus AH1273]
Length = 222
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E+ +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D D+ V+ +T + + ++KPF+ +L+ V ++ +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN-MSRR 117
>gi|229094974|ref|ZP_04225973.1| Two-component response regulator [Bacillus cereus Rock3-29]
gi|229113927|ref|ZP_04243356.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228669527|gb|EEL24940.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228688444|gb|EEL42323.1| Two-component response regulator [Bacillus cereus Rock3-29]
Length = 239
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R+ + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 10 ETILVVDDEKEIRKLITIYLKNEGYKVLQAGDGEEGLRMLEENEVHLVVLDIMMPKVDGI 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 70 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 126
>gi|209523564|ref|ZP_03272118.1| two component transcriptional regulator, LuxR family [Arthrospira
maxima CS-328]
gi|209495969|gb|EDZ96270.1| two component transcriptional regulator, LuxR family [Arthrospira
maxima CS-328]
Length = 246
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++LL +D+ +R + L + + V N ++ +++ L++TDI+MPE+DG
Sbjct: 19 SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + L V+F+T LSKPF +LV V LL
Sbjct: 79 YQFLEQMRSEPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138
Query: 120 IK 121
+
Sbjct: 139 RR 140
>gi|254429432|ref|ZP_05043139.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
gi|196195601|gb|EDX90560.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
Length = 227
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + + + L A Y+ ++ +A RE+ F +L D+++P+ D
Sbjct: 1 MS-RILIVEDEPRLSQLVADYLQHAHYQTEQTDSAKAAIALAREQSFQAVLLDLMLPDGD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ ++ +T + KPF R+LV V +L
Sbjct: 60 GMEVCKAIRQ-HSNVPILMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRR 118
Query: 121 KN 122
N
Sbjct: 119 AN 120
>gi|169827423|ref|YP_001697581.1| hypothetical protein Bsph_1857 [Lysinibacillus sphaericus C3-41]
gi|168991911|gb|ACA39451.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 240
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L Y V + A + E L + DI+MPE+DG +
Sbjct: 15 ILVVDDEKEIADLIELYLKNENYNVFKYYSAQEALACIEREGLDLAILDIMMPEIDGFTI 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + V+ +T + + ++KPF +LV V L
Sbjct: 75 LQKIRETY-NFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQLRR 129
>gi|153852940|ref|ZP_01994377.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
gi|149754582|gb|EDM64513.1| hypothetical protein DORLON_00362 [Dorea longicatena DSM 13814]
Length = 235
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ EDD + + L GYE +G A +++ + L+L D+++P
Sbjct: 1 MS-RILIVEDDRKIAQLESDYLESNGYETKIIEDGKKALSELKTNHYDLILLDLMLPGCS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + D+ ++ +T ++KPF LV V L
Sbjct: 60 GYDICRKIRDE-IDIPILMVTARTEGVDVIRGLGLGADDYITKPFDPSQLVARVRSHLKR 118
>gi|163941059|ref|YP_001645943.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163863256|gb|ABY44315.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 224
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A L++ DI+MP MDG
Sbjct: 3 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 63 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 119
>gi|228925760|ref|ZP_04088844.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|229120222|ref|ZP_04249473.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228663263|gb|EEL18852.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228833775|gb|EEM79328.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|225027370|ref|ZP_03716562.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
gi|224955313|gb|EEG36522.1| hypothetical protein EUBHAL_01626 [Eubacterium hallii DSM 3353]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KI++ +D+ MR+ + L K +EV+ +G A D +++ SL++ D++MP+
Sbjct: 1 MDKLKIMVVDDESRMRKLVKDFLKKKDFEVIEAADGEEALDIFFKDKSISLIICDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G ++ + + + ++ +T + + + +SKPF + LV V +L
Sbjct: 61 INGFDVVKEIRQ-YSQVPIIMLTAKGEESDELNGFDLGVDEYISKPFSPKILVARVEAIL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRSN 123
>gi|17942992|pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
Thermotoga Maritima
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ D+ + +AL K + V C +G EPF +++ DI +P DG
Sbjct: 2 NVRVLVVEDERDLADLITEALKKEXFTVDVCYDGEEGXYXALNEPFDVVILDIXLPVHDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + E + V+ +T + V L KPF LR+L+ V L+ K
Sbjct: 62 WEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFDLRELIARVRALIRRK 121
Query: 122 N 122
+
Sbjct: 122 S 122
>gi|327470096|gb|EGF15560.1| DNA-binding response regulator [Streptococcus sanguinis SK330]
Length = 237
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ +G + R++ L++TDI+MP MD
Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSVDLIITDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 125
>gi|319793165|ref|YP_004154805.1| two component transcriptional regulator phob, winged helix family
[Variovorax paradoxus EPS]
gi|315595628|gb|ADU36694.1| two component transcriptional regulator PhoB, winged helix family
[Variovorax paradoxus EPS]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++L+ ED+ + + L G+E + +GA+A ++ L+L D ++P
Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G++LAR+ + + ++ +T ++KPF ++++ + +
Sbjct: 61 SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRR 124
>gi|331243018|ref|XP_003334153.1| transcriptional activator protein copR [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309313143|gb|EFP89734.1| transcriptional activator protein copR [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 2152
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+D+ DMR FL L + Y VV +G AY + +L++D++MP MDG E
Sbjct: 1378 TVLIADDNSDMRAFLKSVLSRY-YNVVEAVDGQQAYQLAKLNRPDILVSDVMMPGMDGFE 1436
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+ ++ A + A L KPF ++LV VN L I
Sbjct: 1437 LLRRLKADSDTAGMSVILLSARAGSESRIEGLAEGADDYLVKPFEAKELVARVNTHLQI 1495
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 14/129 (10%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--------PFSLLLTDIV 55
+L+ ED+ + + + L GY V +G A +++ + P ++L DI
Sbjct: 2016 HVLVVEDNTINVKVIKRQLTLKGYMVSVAMDGREALNRLYADASETSELPPIDIVLMDIQ 2075
Query: 56 MPEMDGIELARRAT------ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
MP M+G+E E+ V+ +TG A A + KP+ + D
Sbjct: 2076 MPVMNGLEAITHLRAAEKTGEIKKRYPVIAVTGNARKEQTEQCLASGFDSICVKPYKIDD 2135
Query: 110 LVNEVNRLL 118
+ + + LL
Sbjct: 2136 VQSRMEALL 2144
>gi|21325738|dbj|BAC00359.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
Length = 252
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 26 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 85
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 86 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 141
>gi|56416358|ref|YP_153433.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197365280|ref|YP_002144917.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56130615|gb|AAV80121.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197096757|emb|CAR62380.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|332533790|ref|ZP_08409646.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas haloplanktis ANT/505]
gi|332036721|gb|EGI73184.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas haloplanktis ANT/505]
Length = 225
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+QKIL+ ED++++ LI + YE N+G V++ L+L D+++P++DG
Sbjct: 3 SQKILIVEDEENIAEVLIAYAKQQNYETEHFNSGKGVVSFVKQNAVDLILLDLMLPDVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IEL ++ L ++ +T + + KPF ++++ + +L
Sbjct: 63 IELCKKIRA-FSSLPIIMLTAKSEEIDRLQGLEIGADDYICKPFSPKEVIARIKAVLRR 120
>gi|322421457|ref|YP_004200680.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320127844|gb|ADW15404.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 226
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + AL G+E + + G + P L++ DI +P++
Sbjct: 1 MKELILIVDDEPAIVDTIQYALETEGFETLCFSTGMPVIAALAGHPADLVILDIGLPDIG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R + + ++F+T ++KPF R++ V +L
Sbjct: 61 GLELCRLIRQ-TSSVPIIFLTARTDEIDRIVGLELGADDYITKPFSPREVSARVKAVLRR 119
>gi|229030904|ref|ZP_04186923.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228730398|gb|EEL81359.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 236
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MVMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLQVLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
>gi|227541191|ref|ZP_03971240.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
gi|227183035|gb|EEI64007.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
Length = 248
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 22 RVLVVDDEEPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 82 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 137
>gi|326441956|ref|ZP_08216690.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 235
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V S +GA A + RE ++ D+ +P+MDG+
Sbjct: 10 RVLVVDDETALSELLSMALRYEGWQVRSAGDGAGAVSEAREFQPDAVVLDVALPDMDGLT 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R P++ V+F+T AV ++KPF L ++V + L+
Sbjct: 70 LLARLRRERPEVPVLFLTARDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 126
>gi|117619855|ref|YP_857592.1| sensory box sensor histidine kinase/response regulator [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117561262|gb|ABK38210.1| sensory box sensor histidine kinase/response regulator [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 1159
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L L GY ++ ++G A K+ +EP L+L D++MP + G ++
Sbjct: 752 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 811
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR + P L V+ +T + L KPF +L V LL
Sbjct: 812 CRRLRQQHPKEKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVRALLE 868
>gi|111027030|ref|YP_709008.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|110825569|gb|ABH00850.1| response regulator, two-component system [Rhodococcus jostii RHA1]
Length = 252
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + +EV NG A RE +++ D+ +P MDGIE+
Sbjct: 20 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALALAREIDPDVVVLDLGLPGMDGIEVC 79
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T +A + ++KPF R+LV + +L
Sbjct: 80 RQLR-TFSDAYVVMLTARSAEVDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 133
>gi|325845377|ref|ZP_08168676.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Turicibacter sp. HGF1]
gi|325488592|gb|EGC91002.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Turicibacter sp. HGF1]
Length = 230
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++R L L ++G+ V ++G K + ++L DI++P+ D
Sbjct: 1 MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++ ++KPF R++V+++ ++
Sbjct: 61 GFAVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|319940603|ref|ZP_08014946.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
3_1_45B]
gi|319805969|gb|EFW02727.1| hypothetical protein HMPREF9464_00165 [Sutterella wadsworthensis
3_1_45B]
Length = 241
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62
IL+ +D+ +RR ++ L +AGY+V+S +G A + + P +L++ D++MPEMDG
Sbjct: 8 ILVVDDESMIRRLVLANLERAGYDVMSAADGIRALEVYAKAPVKPNLVILDVMMPEMDGF 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E ARR E D+ V+F+T A + KPF + +L+ + +L +
Sbjct: 68 ECARRLREK-KDVPVIFMTAKTDSASKLRGFDLGADDYVCKPFSMEELLARIRAILHRSS 126
>gi|300118431|ref|ZP_07056177.1| two-component response regulator [Bacillus cereus SJ1]
gi|298724216|gb|EFI64912.1| two-component response regulator [Bacillus cereus SJ1]
Length = 208
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYISMTTYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|298531049|ref|ZP_07018450.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509072|gb|EFI32977.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1079
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ ED+ + L K G NNG A D + E F L+L D MPEMDG
Sbjct: 821 RILIVEDNPTNQMVARAVLKKLGLTNSTVANNGREALDILARENFDLVLMDCRMPEMDGF 880
Query: 63 ELARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E RR E +P + ++ +T A + LSKP ++L +NR
Sbjct: 881 EATRRIREGKNSVQNPQVPIVAMTAHAMKGDREKCIQAGMSDYLSKPVQPQELEEIINRQ 940
Query: 118 LT 119
L
Sbjct: 941 LR 942
>gi|296118918|ref|ZP_06837491.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
DSM 20306]
gi|295968016|gb|EFG81268.1| DNA-binding response regulator PhoP [Corynebacterium ammoniagenes
DSM 20306]
Length = 236
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++ L +L G+ V S N+G A RE + D++MP MDG E
Sbjct: 10 TVLVVDDEPNIVELLTVSLKFQGFNVRSANSGTEALRIAREINPEAYILDVMMPGMDGFE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + D V+++T +V ++KPF L +++ + +L
Sbjct: 70 LLAKLRAEGLDGPVLYLTAKDSVDQRIHGLTIGADDYVTKPFSLEEVITRLRVILRR 126
>gi|229017310|ref|ZP_04174214.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1273]
gi|229023487|ref|ZP_04179983.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1272]
gi|228737755|gb|EEL88255.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1272]
gi|228744011|gb|EEL94109.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH1273]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ +R F++ L +AG+ V+ + G A + E+ ++ L D+++P +D
Sbjct: 4 MSA-ILVLEDEIPIRSFIVLNLKRAGFYVLEASTGEEALQILSEQTVNVALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L+ + LL
Sbjct: 63 GFQVCKAIREENKKMGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELIARIQSLLRR 122
>gi|325690941|gb|EGD32941.1| DNA-binding response regulator [Streptococcus sanguinis SK115]
Length = 234
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D + + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|257439473|ref|ZP_05615228.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
gi|257198132|gb|EEU96416.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
Length = 241
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 12 MN-KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 71 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 129
>gi|228961087|ref|ZP_04122714.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228798632|gb|EEM45618.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MSKIILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEEVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|229172695|ref|ZP_04300252.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
gi|228610735|gb|EEK68000.1| Two component transcriptional regulator, winged helix [Bacillus
cereus MM3]
Length = 232
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ +R F++ L +AG+ V+ + G A + E + L D+++P +DG +
Sbjct: 6 TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCEHTVDVALLDVMLPGIDGFQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + + ++ +T ++KPF +L + LL
Sbjct: 66 VCKSIREENKKIGIIMLTARVQNEDKVQGLGIGADDYIAKPFSPVELTARIQSLLRR 122
>gi|168230236|ref|ZP_02655294.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|194469304|ref|ZP_03075288.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194455668|gb|EDX44507.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|205335125|gb|EDZ21889.1| transcriptional regulatory protein CreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
Length = 229
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLEHHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|119511528|ref|ZP_01630637.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
gi|119463839|gb|EAW44767.1| Two component Transcriptional regulator, Winged helix family
protein [Nodularia spumigena CCY9414]
Length = 250
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+V +G + L++ D+++P +DG
Sbjct: 3 RILVIDDDAAISELVAVNLEMAGYDVSQAEDGIKGQALALQLQPDLIMLDLMLPRVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++ V+ +T + + L+KPF + +++ V LL
Sbjct: 63 VCQRLRRDDRTAEIPVLMLTALSQTQNKVEGFNAGADDYLTKPFEVEEMLARVRALLRR 121
>gi|34557362|ref|NP_907177.1| two-component hybrid protein [Wolinella succinogenes DSM 1740]
gi|34483078|emb|CAE10077.1| TWO-COMPONENT HYBRID PROTEIN [Wolinella succinogenes]
Length = 401
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + R L L +AGY + +G R+ L+L DI MPEMDG E+
Sbjct: 12 ILIIDDTPENLRLLGSVLKEAGYLITMAKSGIQGLQAARKHQPDLILLDIRMPEMDGFEV 71
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E + ++ V+F+T + + + KPF +L+ V L +K
Sbjct: 72 LTRLREEENLGEIPVVFLTAHSDEESILRGLSLGAVDYVKKPFSPSELLLRVRNHLELK 130
>gi|47567165|ref|ZP_00237881.1| response regulator DrrA [Bacillus cereus G9241]
gi|49480172|ref|YP_034844.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52144720|ref|YP_082105.1| response regulator [Bacillus cereus E33L]
gi|165871786|ref|ZP_02216430.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167635708|ref|ZP_02394019.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640695|ref|ZP_02398956.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170688522|ref|ZP_02879729.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|177653790|ref|ZP_02935891.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190568207|ref|ZP_03021116.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196035772|ref|ZP_03103175.1| DNA-binding response regulator [Bacillus cereus W]
gi|196041367|ref|ZP_03108661.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196046799|ref|ZP_03114021.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|218901780|ref|YP_002449614.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|222094337|ref|YP_002528396.1| response regulator [Bacillus cereus Q1]
gi|225862556|ref|YP_002747934.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227816544|ref|YP_002816553.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228913274|ref|ZP_04076908.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228925774|ref|ZP_04088858.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932013|ref|ZP_04094905.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944339|ref|ZP_04106712.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229089647|ref|ZP_04220909.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|229154289|ref|ZP_04282409.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|229182915|ref|ZP_04310148.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|254684337|ref|ZP_05148197.1| response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254722139|ref|ZP_05183928.1| response regulator [Bacillus anthracis str. A1055]
gi|254738801|ref|ZP_05196504.1| response regulator [Bacillus anthracis str. Western North America
USA6153]
gi|254743813|ref|ZP_05201497.1| response regulator [Bacillus anthracis str. Kruger B]
gi|254755025|ref|ZP_05207059.1| response regulator [Bacillus anthracis str. Vollum]
gi|254762241|ref|ZP_05214085.1| response regulator [Bacillus anthracis str. Australia 94]
gi|301052236|ref|YP_003790447.1| response regulator [Bacillus anthracis CI]
gi|47556221|gb|EAL14556.1| response regulator DrrA [Bacillus cereus G9241]
gi|49331728|gb|AAT62374.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51978189|gb|AAU19739.1| response regulator [Bacillus cereus E33L]
gi|164712511|gb|EDR18044.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511410|gb|EDR86795.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167528967|gb|EDR91723.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170667547|gb|EDT18303.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172081182|gb|EDT66258.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190560699|gb|EDV14675.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195991739|gb|EDX55704.1| DNA-binding response regulator [Bacillus cereus W]
gi|196022334|gb|EDX61019.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196027852|gb|EDX66465.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|218539177|gb|ACK91575.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|221238394|gb|ACM11104.1| response regulator [Bacillus cereus Q1]
gi|225790637|gb|ACO30854.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|227002844|gb|ACP12587.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228600539|gb|EEK58126.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228629113|gb|EEK85820.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228693677|gb|EEL47378.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228815241|gb|EEM61489.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827596|gb|EEM73338.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833789|gb|EEM79342.1| Two-component response regulator [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228846325|gb|EEM91343.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300374405|gb|ADK03309.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 223
Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|302523820|ref|ZP_07276162.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302432715|gb|EFL04531.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ G A ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAAVAVTGQQALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTDVCKQLRQR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRR 118
>gi|239815299|ref|YP_002944209.1| two component transcriptional regulator PhoB, winged helix family
[Variovorax paradoxus S110]
gi|239801876|gb|ACS18943.1| two component transcriptional regulator PhoB, winged helix family
[Variovorax paradoxus S110]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++L+ ED+ + + L G+E + +GA+A ++ L+L D ++P
Sbjct: 1 MKKPRVLIVEDESSIAELIAVNLRHNGFEPIWSEDGAAAQREIDAFLPDLILLDWMLPGQ 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G++LAR+ + + ++ +T ++KPF ++++ + +
Sbjct: 61 SGLQLARQWRKDPRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQEMLARIRAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRR 124
>gi|168179677|ref|ZP_02614341.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182669403|gb|EDT81379.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 221
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGNFDLIVLDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K ++KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSVPIIMLTALGEEEDEMKGFELKVDDYITKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|153004813|ref|YP_001379138.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152028386|gb|ABS26154.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 470
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++RR L L + GYEV + +G A + + P +++TD+VMP++ G+E
Sbjct: 3 HVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHKTPVHVVVTDLVMPKVGGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-----L 118
L RR PD+ V+ IT +V + ++KPF +L + + L
Sbjct: 63 LLRRVGADFPDVPVIMITAHGSVDSAVGALKAGAFDYITKPFEQDELKKVIAKAARAHDL 122
Query: 119 TIKN 122
+N
Sbjct: 123 ERQN 126
>gi|302036176|ref|YP_003796498.1| putative hybrid histidine kinase [Candidatus Nitrospira defluvii]
gi|300604240|emb|CBK40572.1| putative Hybrid histidine kinase [Candidatus Nitrospira defluvii]
Length = 1210
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILLAED R + L + GYEV NG A + F ++L D MPEMDG
Sbjct: 932 SGRILLAEDSPVNREVAVGMLEQLGYEVEVAENGRQALAAAERDHFDIVLMDCQMPEMDG 991
Query: 62 IELARRATEL-----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ L ++ +T A LSKPF L V +
Sbjct: 992 LTATGEIRRRETASGRRRLPIIALTAHAMQGDREHCLTAGMDDYLSKPFTQMQLQGIVRK 1051
Query: 117 LLT 119
L+
Sbjct: 1052 WLS 1054
>gi|228937554|ref|ZP_04100195.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228970441|ref|ZP_04131095.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977011|ref|ZP_04137418.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228782721|gb|EEM30892.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228789290|gb|EEM37215.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228822128|gb|EEM68115.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326938044|gb|AEA13940.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|229028377|ref|ZP_04184501.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228732925|gb|EEL83783.1| Two-component response regulator [Bacillus cereus AH1271]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|229171105|ref|ZP_04298702.1| Two-component response regulator [Bacillus cereus MM3]
gi|228612378|gb|EEK69603.1| Two-component response regulator [Bacillus cereus MM3]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|254519262|ref|ZP_05131318.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226913011|gb|EEH98212.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+D + + L +GY+V++ NNG A +EE L+L D+++P +DG
Sbjct: 4 EKILVVDDEDHIVELISYNLINSGYKVITANNGIDAVKLAKEENPRLMLLDLMIPGLDGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D+ V+ +T ++KPF +R+L+ + +L
Sbjct: 64 DVCKAIRSDNDTKDISVIMLTAKGEELDKILGLELGADDYMTKPFSIRELLARIKAVLRR 123
>gi|255654526|ref|ZP_05399935.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296449294|ref|ZP_06891079.1| response regulator [Clostridium difficile NAP08]
gi|296880773|ref|ZP_06904722.1| response regulator [Clostridium difficile NAP07]
gi|296261893|gb|EFH08703.1| response regulator [Clostridium difficile NAP08]
gi|296428220|gb|EFH14118.1| response regulator [Clostridium difficile NAP07]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D++ + L YEV + +G A K+ + ++L DI +PE+D
Sbjct: 1 MNNKILVVDDEEGIITLLKDYFEMNSYEVYTAQSGKDALKKISKN-PDIILLDINIPEID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++F+T + + KPF L +L V+ L
Sbjct: 60 GIEVCNRIRD-YVSCPILFLTARIENTDKINGFRAGADDYIVKPFDLDELGARVSAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|169829139|ref|YP_001699297.1| KDP operon transcriptional regulatory protein [Lysinibacillus
sphaericus C3-41]
gi|168993627|gb|ACA41167.1| KDP operon transcriptional regulatory protein [Lysinibacillus
sphaericus C3-41]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ EDD + + L YE +G SA K + + D+ +P++D
Sbjct: 1 MNKRILVVEDDVAIANLIKMTLATQHYEFDIAQDGNSALQKAITMKPDVYILDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + ++ ++ ++ ++KPF + +L+ + L
Sbjct: 61 GVELITKIRS-WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119
>gi|167839921|ref|ZP_02466605.1| predicted signal transduction protein containing a membrane domain,
an EAL and a GGDEF domain [Burkholderia thailandensis
MSMB43]
Length = 709
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ +D + AL G EV+ +G A + + L+L D++MP +DG
Sbjct: 13 QTVLVVDDTPANLELAVSALEADGLEVLVAQSGEEAIRRAQLVVPDLVLLDVMMPGIDGF 72
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR +D D V+F+T + V A L+KPF + +L V L +
Sbjct: 73 ETCRRLKAIDHTRDAPVIFMTALSDVQDKVAGFAAGGIDYLTKPFQIVELAARVKTHLAL 132
Query: 121 K 121
+
Sbjct: 133 R 133
>gi|28867559|ref|NP_790178.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213971031|ref|ZP_03399152.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
tomato T1]
gi|301385594|ref|ZP_07234012.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
Max13]
gi|302058822|ref|ZP_07250363.1| osmolarity response regulator [Pseudomonas syringae pv. tomato K40]
gi|302132149|ref|ZP_07258139.1| osmolarity response regulator [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28850794|gb|AAO53873.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213924267|gb|EEB57841.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
tomato T1]
gi|330874561|gb|EGH08710.1| osmolarity response regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330965663|gb|EGH65923.1| osmolarity response regulator [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|331014862|gb|EGH94918.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFSSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|56479001|ref|YP_160590.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
gi|56315044|emb|CAI09689.1| DNA-binding response regulator [Aromatoleum aromaticum EbN1]
Length = 219
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + ++ +L GY V +G+SA + E F L + D+ +P +DG+E
Sbjct: 2 RVLLVEDDASLGEGILTSLKPEGYTVDWVRDGSSALHALTHESFGLAVLDLGLPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T +A L KPF + +L + LL
Sbjct: 62 VLRQLRAAENPTPVLVLTARDTIADRIAGLDAGADDYLVKPFDVAELKARLRALLRR 118
>gi|154244330|ref|YP_001415288.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154158415|gb|ABS65631.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q+ +LL EDD ++R L LG+ GY V++ +GA+ + L++ D+++P
Sbjct: 1 MAQRTLLLVEDDREIRSLLADFLGREGYGVLAAEDGAAMDRLLATTRPDLVVLDLMLPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + RR L ++ +T A L KPF+ R+L+ + +L
Sbjct: 61 DGLSICRRLRAR-SGLPILMLTAKADDVDRIVGLEMGADDYLVKPFNPRELLARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|317494844|ref|ZP_07953255.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917169|gb|EFV38517.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L L GY++ +G + + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDSHIADLLALHLRDEGYQIEHAADGIAGMSMLEQGGWDALILDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ RRA + ++ I+ ++ ++KPF + +L V L +
Sbjct: 65 DICRRARSMTRYTPIIMISARSSEVHRVLGLELGADDYVAKPFSMVELAARVKALFRRQ 123
>gi|311896418|dbj|BAJ28826.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 228
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L AL + G+ V + +G +E+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTGLELALTRQGHRVAAAASGEDGLRLFKEQRPDLIVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRR 121
>gi|303248202|ref|ZP_07334466.1| two component transcriptional regulator, winged helix family
[Desulfovibrio fructosovorans JJ]
gi|302490466|gb|EFL50375.1| two component transcriptional regulator, winged helix family
[Desulfovibrio fructosovorans JJ]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ EDDDD+ L L AG+ + +G A K R P + ++ D+++P +
Sbjct: 1 MSKDSILIVEDDDDIVELLAFNLQSAGFATETAKDGYDALTKARRTPPAGIILDLMLPGL 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ + ++ +T + KPF R+L+ + +
Sbjct: 61 DGFEVCKELKRDPKTAAAPIIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRLRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LKR 123
>gi|291167113|gb|EFE29159.1| transcriptional regulator FeuP [Filifactor alocis ATCC 35896]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + L GYEV +C NG A+D E + L++ D+ +P MDG++
Sbjct: 2 RILVVEDEKTLCTSIANGLRIDGYEVDTCFNGDDAWDMALSESYDLIILDLNLPGMDGMD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E D + ++ ++ + D L KPFH +L V L +
Sbjct: 62 VLRSIREEDSETGILILSARGQLQDKIDGLDNGANDYLCKPFHFEELEARVRSLTRRR 119
>gi|256786305|ref|ZP_05524736.1| response regulator [Streptomyces lividans TK24]
gi|289770196|ref|ZP_06529574.1| response regulator [Streptomyces lividans TK24]
gi|289700395|gb|EFD67824.1| response regulator [Streptomyces lividans TK24]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|167751876|ref|ZP_02424003.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
gi|167660117|gb|EDS04247.1| hypothetical protein ALIPUT_00118 [Alistipes putredinis DSM 17216]
Length = 217
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +D+DD+ F+ L KAGYEV + NGA + L+L D++MP MD
Sbjct: 1 MSHRILLIDDEDDILEFIRYNLTKAGYEVYTARNGAEGLQQAAAHRPHLILLDVMMPTMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE R + V+F++ +SKP + L++ + +L
Sbjct: 61 GIETCRALRCDPALKETMVVFLSALGEEEQQLAGFGAGADDYISKPIKPKLLISRIQAIL 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|107022380|ref|YP_620707.1| two component transcriptional regulator [Burkholderia cenocepacia
AU 1054]
gi|115351235|ref|YP_773074.1| two component transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|116689327|ref|YP_834950.1| two component transcriptional regulator [Burkholderia cenocepacia
HI2424]
gi|134295368|ref|YP_001119103.1| two component transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|170697960|ref|ZP_02889043.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|170732626|ref|YP_001764573.1| two component transcriptional regulator [Burkholderia cenocepacia
MC0-3]
gi|171318223|ref|ZP_02907386.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|172060249|ref|YP_001807901.1| two component transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|206559652|ref|YP_002230413.1| phosphate regulon two-component regulatory system response
regulator protein [Burkholderia cenocepacia J2315]
gi|105892569|gb|ABF75734.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia AU 1054]
gi|115281223|gb|ABI86740.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria AMMD]
gi|116647416|gb|ABK08057.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia HI2424]
gi|134138525|gb|ABO54268.1| two component transcriptional regulator, winged helix family
[Burkholderia vietnamiensis G4]
gi|169815868|gb|ACA90451.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia MC0-3]
gi|170137126|gb|EDT05371.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|171096567|gb|EDT41461.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|171992766|gb|ACB63685.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MC40-6]
gi|198035690|emb|CAR51577.1| phosphate regulon two-component regulatory system, response
regulator protein [Burkholderia cenocepacia J2315]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|330504290|ref|YP_004381159.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328918576|gb|AEB59407.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 244
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +DD ++R L L + G++V + +G + + E L++ D+++P+ DG
Sbjct: 6 KSILLVDDDQEIRELLETYLSRVGFQVRAVADGGAFRQSLCAESADLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + ++ +T + A L KPF R+L+ + LL
Sbjct: 66 SLCRWVREHQRFAQVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125
>gi|325524664|gb|EGD02663.1| phosphate regulon two-component regulatory system response
regulator protein [Burkholderia sp. TJI49]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|320335459|ref|YP_004172170.1| winged helix family two component transcriptional regulator
[Deinococcus maricopensis DSM 21211]
gi|319756748|gb|ADV68505.1| two component transcriptional regulator, winged helix family
[Deinococcus maricopensis DSM 21211]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + L L + GY NG +A + R L+L D+++PE+
Sbjct: 1 MTHTVLIVEDEVRLADTLEAYLRRDGYRTERATNGRAALELWRAARPDLILLDLMLPEVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR+ D ++ +T + KP+ R++V V +L
Sbjct: 61 GLDVARQVRAAG-DTPIIMLTALDEEVDRLVGLGLGADDYVVKPYSPREVVARVRAVLRR 119
>gi|288958709|ref|YP_003449050.1| two-component response regulator modulated diguanylate cyclase
[Azospirillum sp. B510]
gi|288911017|dbj|BAI72506.1| two-component response regulator modulated diguanylate cyclase
[Azospirillum sp. B510]
Length = 464
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + L L + + V++ +NG A + VR E ++L D++MP MD
Sbjct: 1 MSARVLVVDDVLPNVKLLAAKLTREYFNVLTASNGPDALEMVRTESPDIVLLDVMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + + V+ +T + +A L+KP + L V L+
Sbjct: 61 GFEVCEKIRSDPATMHIPVVMVTALSDIADRVRGLEAGADDFLTKPVNDIALFARVRSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 85.6 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED + + L + V+S + A A ++ L++ + + DG+ L
Sbjct: 158 VLVLEDSVLDLEKVTETLQRDHNTVMSADTCAKALERALGGSLDLVVVSLTLLNEDGLRL 217
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + ++ + + + KP +L+ + K
Sbjct: 218 CSQLRSHERTRQVPILLMVDDGDLGQVAKGLELGANDYVVKPVDRNELLARARTQIRRK 276
>gi|265753017|ref|ZP_06088586.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_1_33FAA]
gi|263236203|gb|EEZ21698.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_1_33FAA]
Length = 1331
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +M+ F+ L Y V+ +NG A + E+ SL+++D++MPEMDG EL
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T + + + KPF L+ + LL+ ++
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQD 1202
>gi|238026792|ref|YP_002911023.1| response regulator [Burkholderia glumae BGR1]
gi|237875986|gb|ACR28319.1| Response regulator [Burkholderia glumae BGR1]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 3 MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 63 GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122
Query: 119 TIK 121
+
Sbjct: 123 RRR 125
>gi|237711589|ref|ZP_04542070.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 9_1_42FAA]
gi|229454284|gb|EEO60005.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 9_1_42FAA]
Length = 1331
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +M+ F+ L Y V+ +NG A + E+ SL+++D++MPEMDG EL
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T + + + KPF L+ + LL+ ++
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQD 1202
>gi|237725951|ref|ZP_04556432.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. D4]
gi|229435759|gb|EEO45836.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides dorei 5_1_36/D4]
Length = 1331
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +M+ F+ L Y V+ +NG A + E+ SL+++D++MPEMDG EL
Sbjct: 1084 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1142
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T + + + KPF L+ + LL+ ++
Sbjct: 1143 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQD 1202
>gi|300776266|ref|ZP_07086124.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
gi|300501776|gb|EFK32916.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDDD + + + K +A +EV +G S + F L++TDIV+P+ DG+E
Sbjct: 3 HILLVEDDDRLSKLIAKGFQEAQFEVTVAYDGNSGMKLALQNHFDLIVTDIVLPKKDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L PDL V+ +T + L+KPF +R+LV + LL
Sbjct: 63 FCNEIKALKPDLPVIMLTALGTTDDKLEGFDAGADDYLTKPFEMRELVARIKVLLKR 119
>gi|212695373|ref|ZP_03303501.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
gi|212662102|gb|EEB22676.1| hypothetical protein BACDOR_04920 [Bacteroides dorei DSM 17855]
Length = 1389
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +M+ F+ L Y V+ +NG A + E+ SL+++D++MPEMDG EL
Sbjct: 1142 ILVVEDDPEMQNFICAQLETV-YCVIRASNGKEALQVLSEKTISLIVSDVMMPEMDGFEL 1200
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T + + + KPF L+ + LL+ ++
Sbjct: 1201 CHTLKTDIEHSHIPIILLTAKVTMQSKIEGIELGADDYIEKPFSTEYLLARIANLLSNQD 1260
>gi|218231365|ref|YP_002370039.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228903747|ref|ZP_04067865.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
gi|218159322|gb|ACK59314.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228855893|gb|EEN00435.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|313900503|ref|ZP_07833996.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312954565|gb|EFR36240.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ ++ + L Y+V C G A +R + L + D+++P+MD
Sbjct: 1 MDMNILVVDDEKEIAGLVEIYLKNENYKVDVCYTGTQALQNIRTRSYDLAILDVMLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T + ++KPF +L+ V L
Sbjct: 61 GFSICRTIRQNY-TWPIIMLTAKEQDIDKINGLMIGADDYMTKPFQPLELIARVKAQLRR 119
>gi|293374354|ref|ZP_06620681.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
gi|292647017|gb|EFF65000.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+A+D+ D+R+ L L GYEVV+ NG A + + +E L++ D+ MP+
Sbjct: 1 MKNRILVADDNQDIRQILQILLTGDGYEVVTACNGEEAIELM-DESIGLVILDVEMPKKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + + ++F+T + + + ++KPF DL+ V LL
Sbjct: 60 GIVVCSEIRQK-SFVPILFLTAYGQESDKTMGFSAGGDDYITKPFSNSDLLIRVKALLRR 118
>gi|167463992|ref|ZP_02329081.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + L G+E +G ++ E F L+L D+++P +D
Sbjct: 1 MLKKILIIEDDTSIAEIERDFLEIDGFETTIATDGIEGLNQASTEKFDLILLDLMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R+ ++ ++ +T A +SKPF +LV V L
Sbjct: 61 GYEICRKIRGKT-EVPILMVTARIEDADKIRGLGLGADDYISKPFSPTELVARVKANL 117
>gi|167031315|ref|YP_001666546.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166857803|gb|ABY96210.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 240
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DDD++R L L AGY V++ +G +++ + L++ D+++P D
Sbjct: 1 MSTTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R+ + P L V+ ++ + L+KPF R+L+ + +L
Sbjct: 61 GLSLCRQL-QATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRR 119
>gi|118476273|ref|YP_893424.1| response regulator [Bacillus thuringiensis str. Al Hakam]
gi|118415498|gb|ABK83917.1| response regulator [Bacillus thuringiensis str. Al Hakam]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ KILL +D++ M R L L GY + +G A + ++ F ++L D++MP
Sbjct: 1 MHKIMVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG + + ++ ++ ++ +T ++KPF LV + +
Sbjct: 61 NMDGWDTCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAI 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|16330036|ref|NP_440764.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1652523|dbj|BAA17444.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D++ + L KALG G+ + + G + + LL+ D ++P++ G+E+
Sbjct: 4 ILLVDDENALTEPLSKALGHQGHTIDVADQGKTGLAMAIAGQYDLLILDWMLPQVSGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ L V+F+T + L KPF LR+L+ V LL ++
Sbjct: 64 CRQIRILGHSTPVLFLTAKDTLDDRVAGLDAGGDDYLIKPFELRELLARVRALLRRQS 121
>gi|322411718|gb|EFY02626.1| response regulator protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +++ + L + GY V +NG A + + L++ DI+MP MDG L
Sbjct: 4 ILVVEDDWSLQKVISTKLSQEGYHVHVASNGQEALNYLENTHIDLMVVDIMMPVMDGYSL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E L ++ +T + ++ L KP L +LV + LL
Sbjct: 64 VKLLRESGQQLPILMMTAKSQFESLEEAFQLGVDDYLVKPIILSELVLRIKALLRR 119
>gi|229101075|ref|ZP_04231844.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228682343|gb|EEL36451.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|229172566|ref|ZP_04300125.1| Two-component response regulator vanR [Bacillus cereus MM3]
gi|228611037|gb|EEK68300.1| Two-component response regulator vanR [Bacillus cereus MM3]
Length = 247
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 21 ILIVDDDQDIIRFVKANLMQEGFKVFSAHNGERALEIINNNSIKLAILDIMMPQMDGIEL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ + + + KPF + + V L
Sbjct: 81 CRRIREKHS-LPIMFLSAKTSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135
>gi|269957269|ref|YP_003327058.1| winged helix family two component transcriptional regulator
[Xylanimonas cellulosilytica DSM 15894]
gi|269305950|gb|ACZ31500.1| two component transcriptional regulator, winged helix family
[Xylanimonas cellulosilytica DSM 15894]
Length = 243
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + + L G+ V +G SA D ++ D+++P +DG+E
Sbjct: 17 TILVVEDEPAIATAVAQRLTAEGWRVEVARDGLSAVDAAARLRPDAVVLDVMLPGIDGLE 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P ++ +T ++KPF +R+LV V LL
Sbjct: 77 VTRRIQADHP-TPILMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARVKALLRR 132
>gi|225568320|ref|ZP_03777345.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
15053]
gi|225162849|gb|EEG75468.1| hypothetical protein CLOHYLEM_04395 [Clostridium hylemonae DSM
15053]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GYEV +G + + E L + D++MP MD
Sbjct: 3 MN-HVLIVEDDKEIREGVEIYLKSQGYEVYQAADGREGLEVIEREDIHLAIVDVMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + R E D V+ ++ + ++KPF +L+ VN L
Sbjct: 62 GITMVVRLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120
>gi|188997385|ref|YP_001931636.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188932452|gb|ACD67082.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 219
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 54/114 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ D+ + + L GY V S +G A + + + +++ D+++P++DG+E
Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYVVDSAFDGKEALNFIENSSYDVIILDLMLPDIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ + D V+ +T ++KPF + +L+ + +
Sbjct: 62 VLKTIRNKGIDTPVIILTAKNQTKDKITGLDLGADDYITKPFDVDELLARIRAI 115
>gi|187777132|ref|ZP_02993605.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
15579]
gi|187774060|gb|EDU37862.1| hypothetical protein CLOSPO_00677 [Clostridium sporogenes ATCC
15579]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A K E LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R E ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIREE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|218232740|ref|YP_002365097.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228962219|ref|ZP_04123659.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|229042157|ref|ZP_04189914.1| Two-component response regulator [Bacillus cereus AH676]
gi|229107932|ref|ZP_04237562.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229143055|ref|ZP_04271491.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|229148658|ref|ZP_04276911.1| Two-component response regulator [Bacillus cereus m1550]
gi|296501083|ref|YP_003662783.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|218160697|gb|ACK60689.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228634819|gb|EEK91395.1| Two-component response regulator [Bacillus cereus m1550]
gi|228640420|gb|EEK96814.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228675530|gb|EEL30744.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228727192|gb|EEL78392.1| Two-component response regulator [Bacillus cereus AH676]
gi|228797467|gb|EEM44640.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|296322135|gb|ADH05063.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|160883013|ref|ZP_02064016.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
gi|156111485|gb|EDO13230.1| hypothetical protein BACOVA_00976 [Bacteroides ovatus ATCC 8483]
Length = 1347
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+DD+R ++ + Y +++ +G ++ +E ++++DI+MP MDGIEL
Sbjct: 1093 ILVVEDNDDIREYIATSFSTN-YRILTAADGKGGLEQAQEFIPDIIISDIMMPVMDGIEL 1151
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E + V+ +T ++ + L+KPF + L + V+ LL +
Sbjct: 1152 CKQIKEDVCTSHIPVILLTAKDSIQDKEEGYESGADSYLTKPFSAKLLNSRVHNLLESR 1210
>gi|126700252|ref|YP_001089149.1| two-component response regulator [Clostridium difficile 630]
gi|254976231|ref|ZP_05272703.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255093618|ref|ZP_05323096.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255101806|ref|ZP_05330783.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255307673|ref|ZP_05351844.1| two-component response regulator [Clostridium difficile ATCC 43255]
gi|255315366|ref|ZP_05356949.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255518031|ref|ZP_05385707.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255651147|ref|ZP_05398049.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|255656615|ref|ZP_05402024.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|260684213|ref|YP_003215498.1| two-component response regulator [Clostridium difficile CD196]
gi|260687872|ref|YP_003219006.1| two-component response regulator [Clostridium difficile R20291]
gi|296449929|ref|ZP_06891693.1| response regulator [Clostridium difficile NAP08]
gi|296878311|ref|ZP_06902319.1| response regulator [Clostridium difficile NAP07]
gi|306520997|ref|ZP_07407344.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|115251689|emb|CAJ69524.1| Two-component response regulator [Clostridium difficile]
gi|260210376|emb|CBA64753.1| two-component response regulator [Clostridium difficile CD196]
gi|260213889|emb|CBE05918.1| two-component response regulator [Clostridium difficile R20291]
gi|296261199|gb|EFH08030.1| response regulator [Clostridium difficile NAP08]
gi|296430609|gb|EFH16448.1| response regulator [Clostridium difficile NAP07]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ +D+ + L L + YEV +G + K +E L+L D ++P +
Sbjct: 1 MNTKVLVIDDEMHIVELLKFNLEVSNYEVSYSYDGFDGFIKAKEIKPDLILLDWMLPNIS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R+ ++ V+ +T + ++KPF +++L+ ++ +L
Sbjct: 61 GIEVLRKIRSDKDLKNIPVIMLTAKNMENDKVEGLEIGADDYITKPFSIKELLARISSVL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRYN 124
>gi|115360529|ref|YP_777666.1| two component transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115285857|gb|ABI91332.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria AMMD]
Length = 239
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|226943678|ref|YP_002798751.1| Response regulator, transciptional regulatory protein [Azotobacter
vinelandii DJ]
gi|226718605|gb|ACO77776.1| Response regulator, transciptional regulatory protein [Azotobacter
vinelandii DJ]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G++V +C++G +A + E+ +++ D+++P+
Sbjct: 1 MSE-LLLIDDDCELCELLGSWLTQEGFQVRACHDGQAARGALAEKTPDVVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRGNFPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
>gi|331700970|ref|YP_004397929.1| winged helix family two component transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329128313|gb|AEB72866.1| two component transcriptional regulator, winged helix family
[Lactobacillus buchneri NRRL B-30929]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE VS +G A ++R E L++ DI+MP M+GI
Sbjct: 2 KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGQEALTRLRTESDIGLMILDIMMPGMNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ ++KPF+ +++ V LL
Sbjct: 62 EVVKEVRK-DSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|329957277|ref|ZP_08297797.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328522990|gb|EGF50093.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1363
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++R +L L + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1114 TILIVEDNQEIRHYLSSGLAGL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1172
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-I 120
L + + + V+ ++ + + +SKPF + L +++ ++
Sbjct: 1173 LCKNIKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYISKPFAITVLTSKIQNMMRTR 1232
Query: 121 KN 122
++
Sbjct: 1233 RH 1234
>gi|300864141|ref|ZP_07109036.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300337869|emb|CBN54182.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 409
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L GY+V +G +A ++V L+L DI+MP +DG E
Sbjct: 10 ILIVDDNPNNLEVLAHILTDVGYQVSVAIDGETAIEQVEYHQPELILLDIMMPGIDGFET 69
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR L ++ ++F+T + + + +SKPF +++ + L + N
Sbjct: 70 CRRLKANPLTCEIPIIFLTALSDSNNKVNGLSVGAVDYISKPFQSEEVLARIRIHLKLYN 129
>gi|299139617|ref|ZP_07032791.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
gi|298598545|gb|EFI54709.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+QK +L+ EDD +R+ L + LG G+ V +NG A ++R + +L DI MP
Sbjct: 1 MDQKSKVLVVEDDAGIRQSLFETLGALGFAVGEASNGEDAMLRLRMVNYDAVLLDINMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M G E RR + P L V+ +T ++ ++KPF +R+L + ++
Sbjct: 61 MGGKETCRRICQSYPHLPVVMLTVRDEEDDIVEALDAGAFDYVTKPFQIRELTARLRAVI 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSH 124
>gi|291542174|emb|CBL15284.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus bromii
L2-63]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
+KIL+ ED+ +R F++ L +AGY+VV + G +A K E F + + D++MP +D
Sbjct: 2 KKILVCEDEAAIRDFVVINLTRAGYDVVEADCGEAALQKYEENNGDFDVAILDVMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + + ++ ++ ++KPF +L+ V+ L
Sbjct: 62 GFQVCKELRNRNGGIGIIMLSAKTQEMDKVTGLMLGADDYVTKPFSPSELLARVDSLYRR 121
>gi|260909644|ref|ZP_05916341.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 472 str. F0295]
gi|260636255|gb|EEX54248.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 472 str. F0295]
Length = 935
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ +D+ D+ F+ L Y ++ ++G +K + +++TD++MP +DG+
Sbjct: 683 QRVLVIDDNADVAAFIGSQLSDK-YGIIYAHDGQDGLEKAEQLVPDVIVTDLMMPGIDGL 741
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E+ + ++ +T LSKPF+ +L V +LL
Sbjct: 742 EVCRRIRANEVTSHIPIIVVTAKITENDRVKGLEAGADAYLSKPFNRDELRMRVEKLLEQ 801
Query: 121 K 121
+
Sbjct: 802 R 802
>gi|229825839|ref|ZP_04451908.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
49176]
gi|229789859|gb|EEP25973.1| hypothetical protein GCWU000182_01202 [Abiotrophia defectiva ATCC
49176]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ D+ + L K GY V +G A E S +L D++MP+MDG E+
Sbjct: 4 ILIADDNADITKVLAAYTSKEGYNPVIATDGEEALKLFDEVSPSAVLLDVMMPKMDGYEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ ++ +T + KPF +++ + +L
Sbjct: 64 CRKIRAK-SNVPIILVTARGEGFEKIMGLDIGADDYIVKPFSPSEVMARLRAVLRR 118
>gi|182419828|ref|ZP_02951068.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237666356|ref|ZP_04526341.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376376|gb|EDT73958.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237657555|gb|EEP55110.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++R + L GY + +G A D + +++ D++MP ++GIE
Sbjct: 6 ILIVDDEKEIRDLVEIYLKSEGYNTLQACDGLEAIDIIENTDVDIVILDVMMPNLNGIET 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E+ ++ ++ ++ + LSKPF+ +LV V L
Sbjct: 66 CLKIREM-KEMPIIMLSAKSEDIDKILGLNMGADDYLSKPFNPLELVARVKSQLRR 120
>gi|152977462|ref|YP_001376979.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026214|gb|ABS23984.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ + +L+ D+++P++DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEIEGYEVLTAASGKEALERWEDG-PDVLILDVMLPDIDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|317124213|ref|YP_004098325.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315588301|gb|ADU47598.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 247
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 4/125 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDK---VREEPFSLLLTDIVMP 57
M + +L+ +D+ +R L L G+ V G A + + L L D+ +P
Sbjct: 1 MARHVLVVDDEAQIRTVLRAYLEADGFVVSEAGTGGEALRQMTTANGQRPDLALLDVGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++DG+E+ RR DL V+ +T + ++KPF R++V V +
Sbjct: 61 DLDGLEVLRRVRAQ-SDLFVILVTARSEEVDKLVGLGIGADDYITKPFSPREVVARVKTV 119
Query: 118 LTIKN 122
L ++
Sbjct: 120 LRRRH 124
>gi|258591886|emb|CBE68189.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family) [NC10
bacterium 'Dutch sediment']
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ D+ + L + G+ V+ ++G A + V+ E SLL+ D+++P + G++
Sbjct: 2 KVLVVDDEKDITALVAYHLEREGFRVLQAHDGLQALELVKRERPSLLVLDLMLPHLSGLD 61
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + L ++ +T A L+KPF ++LV V L+
Sbjct: 62 VCRRLRKEPDTARLPILMLTAKAEETDKVLGLELGGDDYLTKPFGPKELVARVKALIRR 120
>gi|228905009|ref|ZP_04069054.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228854640|gb|EEM99253.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|255039089|ref|YP_003089710.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254951845|gb|ACT96545.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L ED+ + + +L G+EV+ NG ++ R +++ DI+MP+MDG
Sbjct: 3 TVLFIEDEPALGMIVKDSLTYRGFEVLYAANGVEGLEQFRLHRPDIVVADIMMPDMDGFT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+A DP + +MF+T + A L KPF L +L+ +N LL
Sbjct: 63 MAEHIRRDDPHVPIMFLTARSQTADVVRGFELGGNDYLKKPFSLEELIVRINALLR 118
>gi|222085608|ref|YP_002544138.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221723056|gb|ACM26212.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 458
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L +EV++ +G A L+L DI+MP MD
Sbjct: 2 MTARILVVDDIPANVKLLEARLLAEYFEVLTAEDGLKALAICDSTQVDLVLLDIMMPGMD 61
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ R + V+ +T A L+KP + L++ V LL
Sbjct: 62 GFDVCERLKSDARTSHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 121
Query: 119 TIK 121
+K
Sbjct: 122 RLK 124
Score = 68.6 bits (168), Expect = 3e-10, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL + + + +++AL +V + ++ +A +V E+PF L++ + + D +
Sbjct: 158 HILLVDGRANSQERIVRALKPI-AQVTATSDPQAALFEVAEKPFELVIVNSNFEDYDPLR 216
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E L V+ +T A + + + +P +LV + K
Sbjct: 217 LCSQLRSLERTRFLPVLLVTEQGADEMIVRALDLGVNDYIVRPLDPNELVARSLTQIRRK 276
>gi|221195264|ref|ZP_03568320.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
gi|221185167|gb|EEE17558.1| DNA-binding response regulator [Atopobium rimae ATCC 49626]
Length = 257
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L GY V +NG A + + E + L+L D+ +P +DG++
Sbjct: 30 KILVVEDERELLTSIGEGLEIDGYYVDLIDNGTEALEMAQIEQYDLILLDLNLPGVDGLD 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + KV+ ++ ++VA L KPF +L + LL +
Sbjct: 90 LLRTLRREHSETKVLILSARSSVADRIVGLDAGADDYLVKPFAFGELEARIRNLLRRE 147
>gi|42781806|ref|NP_979053.1| transcription response regulator-like protein [Bacillus cereus ATCC
10987]
gi|42737730|gb|AAS41661.1| transcription response regulator-like protein [Bacillus cereus ATCC
10987]
Length = 221
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y VV ++G + ++ F L+L D++MP ++G
Sbjct: 3 NYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLVLLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A+ ++ ++ +T ++KPF L+ V +L
Sbjct: 63 FEVAKMIRSQ-SNIPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120
>gi|284050985|ref|ZP_06381195.1| two component transcriptional regulator, LuxR family protein
[Arthrospira platensis str. Paraca]
Length = 222
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD R + L +GY V+S NG A V + L++TDI MPEMD
Sbjct: 1 MPLTLLVVDDDLGTRLSISDYLEMSGYFVISATNGQEALQLVEKHQPHLIVTDIAMPEMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL +R L V+F+T + L KPF L +L + LL
Sbjct: 61 GFELVKRVRSQPGFRLLPVIFLTAHTSTEERIRGYQLGCDNYLPKPFELEELGVVIRSLL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|209550328|ref|YP_002282245.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209536084|gb|ACI56019.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GI+
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGID 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|206970138|ref|ZP_03231091.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|206734715|gb|EDZ51884.1| DNA-binding response regulator [Bacillus cereus AH1134]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ + +
Sbjct: 61 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARR 117
>gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str.
AS9601]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+E++ +G ++K + L+++D++MP +G +
Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIIIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYD 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E + V+F+T + +SKPF +L V ++ +
Sbjct: 76 LLKKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINRQ 135
>gi|39998006|ref|NP_953957.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|39984951|gb|AAR36307.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|298506947|gb|ADI85670.1| sigma-54-dependent transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 457
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ +R L + L K GY+VVS NG A VREE L+L DI +P +
Sbjct: 1 MRKTKILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVREEQPDLVLLDIQLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E + E D ++ V+ +T A+ + ++KPF+L ++ + + L
Sbjct: 61 SGLEALEKIKEYDEEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMSIVIRKALE 120
>gi|77457710|ref|YP_347215.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77381713|gb|ABA73226.1| putative two-component system, response regulatory protein
[Pseudomonas fluorescens Pf0-1]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G++V +C++G SA + E + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLSSWLSQEGFQVRACHDGQSARKALAETAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ DL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSDHADLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|299535842|ref|ZP_07049163.1| KDP operon transcriptional regulatory protein [Lysinibacillus
fusiformis ZC1]
gi|298729042|gb|EFI69596.1| KDP operon transcriptional regulatory protein [Lysinibacillus
fusiformis ZC1]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ EDD + + L YE +G SA K + + D+ +P++D
Sbjct: 1 MSKRILVVEDDVAIANLIKMTLATNHYEFDIARDGNSALQKALTIKPDVFILDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + ++ ++ ++ ++KPF + +L+ + L
Sbjct: 61 GVELITKIRS-WNQTPIIVVSARGEEHDKINALDAGADDYVTKPFSVEELLARIRVALRR 119
>gi|49479989|ref|YP_034596.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|218901462|ref|YP_002449296.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228913000|ref|ZP_04076642.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228983517|ref|ZP_04143725.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|229089394|ref|ZP_04220667.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|229154029|ref|ZP_04282157.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|301051996|ref|YP_003790207.1| response regulator [Bacillus anthracis CI]
gi|49331545|gb|AAT62191.1| response regulator [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|218538182|gb|ACK90580.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228629449|gb|EEK86148.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228693943|gb|EEL47633.1| Two-component response regulator [Bacillus cereus Rock3-42]
gi|228776224|gb|EEM24582.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228846654|gb|EEM91664.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|300374165|gb|ADK03069.1| response regulator [Bacillus cereus biovar anthracis str. CI]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|332535342|ref|ZP_08411138.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035215|gb|EGI71723.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas haloplanktis ANT/505]
Length = 241
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD ++ + + L V + A K+ + P+ L+L DI +P+MDG+
Sbjct: 4 EKILVVEDDREIGKLITTQLTSLNLHVDHVVSAELALKKIAKHPYGLILLDINLPQMDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ E P V+ +T ++ + KPF R+L V L +
Sbjct: 64 SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHR 122
>gi|315647246|ref|ZP_07900359.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277448|gb|EFU40777.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL EDD D+ + + L + Y V S ++G A F L+L D+++P+++
Sbjct: 1 MQKRILLVEDDHDIHQLIESQLQQDHYHVDSAHDGEEAVALFHSGKFDLILLDLMLPKIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L R E + V+ I+ + +SKPF + +L V +
Sbjct: 61 GMDLLRHFRE-SSKVPVLIISAKGSDLDKAMGLGFGADDYISKPFSMIELTARVQAAIRR 119
>gi|229159665|ref|ZP_04287676.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623816|gb|EEK80631.1| Two-component response regulator [Bacillus cereus R309803]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + N+G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|239627744|ref|ZP_04670775.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517890|gb|EEQ57756.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G DK +E + LL+ D+++P D
Sbjct: 1 MS-KILIVEDEESIAELEKDYLELSGFEVEIENDGTEGLDKALKEDYDLLILDLMLPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E+ + ++ ++ ++KPF ++V V +
Sbjct: 60 GFEICKKVREV-KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118
>gi|254413006|ref|ZP_05026778.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
gi|196180170|gb|EDX75162.1| GAF domain protein [Microcoleus chthonoplastes PCC 7420]
Length = 1197
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ D+R ++ L ++GY+V + NG + ++ L++TD++MP M G++
Sbjct: 833 RILVVDDNSDLRAYVGSILKQSGYQVWTARNGEEGWQMTQKCHPQLIVTDLMMPVMSGLD 892
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++ +T A A + LSKPF+ R+L+ EV LL +K
Sbjct: 893 MIHTIRGSQDFKGIPIILLTAKADEASRIEGTEKGADAYLSKPFNDRELLAEVRNLLALK 952
Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 32 CNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNP 90
+NG +A + + E +++++D MP M G E PD+ + +TG+ V
Sbjct: 3 ADNGPAALEILEAEGDVAVIISDQRMPLMSGTEFLSITAAQYPDIIRIILTGYTDVEDLV 62
Query: 91 DSNAPK-NAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ K ++KP++ +L + V + + N
Sbjct: 63 EAINAGKVFKYVTKPWNAEELKSVVRQAMDTHN 95
>gi|126664628|ref|ZP_01735612.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
gi|126630954|gb|EBA01568.1| two-component response regulator PhoB [Marinobacter sp. ELB17]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + + AL AGY + + +A+ + ++ L+L D ++P GI
Sbjct: 4 KTILIVDDESAICEMVTVALEMAGYVCLQAADAKAAHTLIVDKRPDLILLDWMLPGTSGI 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ELARR + D + ++ +T ++KPF R+L+ + +L
Sbjct: 64 ELARRLKKDDTTAAIPIIMLTAKVEEDNKILGLESGADDYITKPFSPRELLARLKAVLRR 123
>gi|332093887|gb|EGI98941.1| acetoacetate metabolism regulatory protein atoC [Shigella boydii
5216-82]
Length = 299
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|324014608|gb|EGB83827.1| transcriptional regulatory protein OmpR [Escherichia coli MS 60-1]
Length = 239
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL +DD +R L + L + G++V S N + E F L++ D+++P DG
Sbjct: 4 NYKILGVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + ++ +T + KPF+ R+L+ + +L +
Sbjct: 64 LSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 123
>gi|114332048|ref|YP_748270.1| two component transcriptional regulator, winged helix family
protein [Nitrosomonas eutropha C91]
gi|114309062|gb|ABI60305.1| two component transcriptional regulator, winged helix family
[Nitrosomonas eutropha C91]
Length = 240
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ ++ + L A Y VV N+ A K+ E L+L D ++
Sbjct: 1 MSATVLVVEDEPAIQELIAYNLRNANYIVVCVNSAEQAVVKINEILPDLILLDWMLLGKS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE AR + V+ +T ++KPF R+L+ + +L
Sbjct: 61 GIEFARSLRRDPRTRSIPVIMLTARVEEGDKVSGLEAGADDYITKPFSPRELIARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|284051985|ref|ZP_06382195.1| two component LuxR family transcriptional regulator [Arthrospira
platensis str. Paraca]
gi|291570486|dbj|BAI92758.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++LL +D+ +R + L + + V N ++ +++ L++TDI+MPE+DG
Sbjct: 19 SPRLLLVDDEPGLREAVQAYLEDSNFIVDVAENAKLGWELLQQNLPDLVITDIMMPEVDG 78
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + L V+F+T LSKPF +LV V LL
Sbjct: 79 YQFLEQMRSDPKFKALPVVFLTAKGMKGDRIQGYQAGCDAYLSKPFDPEELVAIVKNLLE 138
Query: 120 IK 121
+
Sbjct: 139 RR 140
>gi|229063921|ref|ZP_04200222.1| DNA-binding response regulator [Bacillus cereus AH603]
gi|229136075|ref|ZP_04264831.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
gi|229169971|ref|ZP_04297664.1| DNA-binding response regulator [Bacillus cereus AH621]
gi|228613489|gb|EEK70621.1| DNA-binding response regulator [Bacillus cereus AH621]
gi|228647396|gb|EEL03475.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
gi|228716391|gb|EEL68099.1| DNA-binding response regulator [Bacillus cereus AH603]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E+ +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREALERWNEQ-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFREKERDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|209524098|ref|ZP_03272649.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209495473|gb|EDZ95777.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AED+ + FL K L +G+ N+G ++ F LL+ D+ +P+ D
Sbjct: 1 MS-RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLEQACSHNFDLLILDLGLPDRD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + L ++ +T ++ ++KPF +L+ V L
Sbjct: 60 GFQILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRN 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|110802073|ref|YP_699510.1| DNA-binding response regulator [Clostridium perfringens SM101]
gi|110682574|gb|ABG85944.1| DNA-binding response regulator [Clostridium perfringens SM101]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R FL + ++V+ C +G K E + + D+++P M+G E
Sbjct: 2 KILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E P + ++ +T + KPF+ ++ V L+
Sbjct: 62 VCQKLRESFPRMGIIMLTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118
>gi|86144202|ref|ZP_01062538.1| two-component system, transcriptional regulatory protein
[Leeuwenhoekiella blandensis MED217]
gi|85829332|gb|EAQ47798.1| two-component system, transcriptional regulatory protein
[Leeuwenhoekiella blandensis MED217]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y+V NG ++K +++ F L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMNDYDVTHAKNGMEGFEKFKKDDFDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + D+ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEDVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIMLRK 124
>gi|116669289|ref|YP_830222.1| two component transcriptional regulator [Arthrobacter sp. FB24]
gi|116609398|gb|ABK02122.1| two component transcriptional regulator, winged helix family
[Arthrobacter sp. FB24]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ L LGK G+EV +NG A + L+L D+ +P
Sbjct: 1 MS-RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + V+ +T A ++KP+ R+LV V +L
Sbjct: 60 GTEVCRQLRQR-SSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|311896850|dbj|BAJ29258.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++ L L K G+EV G A ++ L+L D+++P + G E
Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFEVAVAATGPDALEQFERNGADLVLLDLMLPGLPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + ++ V+ +T + ++KP+ R+LV + +L +
Sbjct: 63 VCRQLR-VRSNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPYSTRELVARIRAVLRRR 119
>gi|307946075|ref|ZP_07661410.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
gi|307769739|gb|EFO28965.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D D+R L + L K G+ S + A A ++ L++ DI+MP DG
Sbjct: 5 SPHILVVDDHRDIRETLARYLIKNGFRATSVESAAHARKALKAAVIDLVVLDIMMPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L R + V+ +T A ++KPF+ R+L+ + +L
Sbjct: 65 LSLCRHLVATGS-IPVILLTAMADDMDRVIGLEIGADDYVTKPFNPRELLARIKAVLRRT 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|300867490|ref|ZP_07112141.1| two-component response regulator [Oscillatoria sp. PCC 6506]
gi|300334484|emb|CBN57309.1| two-component response regulator [Oscillatoria sp. PCC 6506]
Length = 611
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D R L K L K GY V NG A + L+L DI+MPEMDG E+
Sbjct: 13 ILIVDDNPDNLRLLSKMLTKKGYHVRKALNGQMALTAAQAVVPDLVLLDIMMPEMDGYEV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ V+F++ + + A A ++KPF L +++ V L ++
Sbjct: 73 CTHLKADPKTAEIPVIFLSALSDAFDKVKAFAVGGADYVAKPFQLAEVLARVQNQLALR 131
>gi|294501737|ref|YP_003565437.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|295707087|ref|YP_003600162.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294351674|gb|ADE72003.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294804746|gb|ADF41812.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 241
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ + + L L YEV +G + + + L+L D+++P +
Sbjct: 1 MKEKILIVEDEAQIAKVLKIELEFEDYEVDVEYDGKAGLETATSAQYDLILLDVMLPSLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + V+ +T ++KPF + +L+ V +
Sbjct: 61 GIEVLRRLRKAEVFTPVILLTARNTTLDKVMGLDQGANDYVTKPFEIEELLARVRSCIRY 120
Query: 121 KN 122
++
Sbjct: 121 RS 122
>gi|284992967|ref|YP_003411521.1| winged helix family two component transcriptional regulator
[Geodermatophilus obscurus DSM 43160]
gi|284066212|gb|ADB77150.1| two component transcriptional regulator, winged helix family
[Geodermatophilus obscurus DSM 43160]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++ L L K G++ V NNG A + ++L D+++P + G E
Sbjct: 3 RVLVVEDEESFSDALSYMLRKEGFDAVVANNGPEALAEFERGGADVVLLDLMLPGLPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + ++ +T A ++KP+ R+LV + +L +
Sbjct: 63 VCRQLRSR-SSVPIIMLTAKDAEVDKVVGLELGADDYVTKPYSARELVARIRAVLRRR 119
>gi|266622614|ref|ZP_06115549.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
13479]
gi|288865657|gb|EFC97955.1| DNA-binding response regulator YycF [Clostridium hathewayi DSM
13479]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + + +L + EV +G A + +++ + ++L D+++P+ DG E
Sbjct: 3 RILVVDDEKLIVKGIRFSLEQDNMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKFDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 63 VCQAIRE-FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 118
>gi|256422755|ref|YP_003123408.1| response regulator receiver sensor signal transduction histidine
kinase [Chitinophaga pinensis DSM 2588]
gi|256037663|gb|ACU61207.1| response regulator receiver sensor signal transduction histidine
kinase [Chitinophaga pinensis DSM 2588]
Length = 1010
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ DMR +L + L K Y + + NG A +K+ L+++D++MPEMDGIE
Sbjct: 629 RVLIVDDNADMRDYLQRLLEKQ-YYIETAANGKLALEKIATHQPELIISDVMMPEMDGIE 687
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L L V+ ++ A + L+KPF ++L V + +
Sbjct: 688 LLHHVKHNPATESLPVILVSARAGEEATIEGYDIGADDYLTKPFSAKELQARVRAQIRV 746
>gi|229171369|ref|ZP_04298954.1| Two-component response regulator [Bacillus cereus MM3]
gi|228612073|gb|EEK69310.1| Two-component response regulator [Bacillus cereus MM3]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + N+G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKANSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|206976990|ref|ZP_03237891.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217962303|ref|YP_002340873.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|222098284|ref|YP_002532341.1| two-component response regulator [Bacillus cereus Q1]
gi|229141548|ref|ZP_04270082.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|206744795|gb|EDZ56201.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217065924|gb|ACJ80174.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|221242342|gb|ACM15052.1| Two-component response regulator [Bacillus cereus Q1]
gi|228641948|gb|EEK98245.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+D +R L Y V +G A EE L++ DI++PE+D
Sbjct: 1 MAKNILIVEDEDILREILKDYFLSEQYVVFEARDGKEALVVFEEEVVDLVILDIMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR + ++ ++ +T ++KP+ L+ RLL
Sbjct: 61 GWSVCRRIRK-TSEVPIIMLTARVDEDDTLLGFELGADDYVTKPYSPPILLARAKRLLES 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|126432952|ref|YP_001068643.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
gi|126232752|gb|ABN96152.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. JLS]
Length = 1390
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ DMR +L L AGYEV + ++G A + +R E L+++D++MP +DG+E
Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGLE 697
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR--LL- 118
L L V+ ++ A + + L KPF +L+ V+ L
Sbjct: 698 LVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVALA 757
Query: 119 TIKN 122
++N
Sbjct: 758 RLRN 761
>gi|66043528|ref|YP_233369.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
B728a]
gi|302188958|ref|ZP_07265631.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
642]
gi|63254235|gb|AAY35331.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|330901510|gb|EGH32929.1| osmolarity response regulator [Pseudomonas syringae pv. japonica
str. M301072PT]
gi|330943280|gb|EGH45670.1| osmolarity response regulator [Pseudomonas syringae pv. pisi str.
1704B]
gi|330972160|gb|EGH72226.1| osmolarity response regulator [Pseudomonas syringae pv. aceris str.
M302273PT]
gi|330977296|gb|EGH77250.1| osmolarity response regulator [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|86133169|ref|ZP_01051751.1| two-component system response regulator [Polaribacter sp. MED152]
gi|85820032|gb|EAQ41179.1| two-component system response regulator [Polaribacter sp. MED152]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KILL EDD + L L Y V +G + + L + D++MP DG
Sbjct: 3 SKKILLVEDDPNFGTVLKDYLALNDYNVTHAKDGIEGLIMFKNSDYDLCILDVMMPRKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ + ++ ++F+T + L+KPF L++++ +L K
Sbjct: 63 FSLAQDIRSTNKEVPIIFLTAKTLKEDVLKGYSVGADDYLNKPFDSEVLLHKIKAILQRK 122
>gi|134292232|ref|YP_001115968.1| two component transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134135389|gb|ABO56503.1| two component transcriptional regulator, winged helix family
[Burkholderia vietnamiensis G4]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKPDHVLIVDDDRAIRELIADYLEKNGMRVSVAANGREMRNLLDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLALCRDLRAGRFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|330828750|ref|YP_004391702.1| sensory box sensor histidine kinase/response regulator [Aeromonas
veronii B565]
gi|328803886|gb|AEB49085.1| Sensory box sensor histidine kinase/response regulator [Aeromonas
veronii B565]
Length = 1131
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L L GY ++ ++G A K+ EEP L+L D++MP + G ++
Sbjct: 724 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAEEPVDLILLDVMMPTLSGFDV 783
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + P L V+ +T + L KPF +L V LL K
Sbjct: 784 CRRLRQQHPKDMLPVLLLTALNQPKDIEEGFGAGANDYLVKPFCKEELFARVKALLEAK 842
>gi|327490080|gb|EGF21868.1| DNA-binding response regulator [Streptococcus sanguinis SK1058]
gi|332367393|gb|EGJ45126.1| DNA-binding response regulator [Streptococcus sanguinis SK1059]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D + + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMTHEGYQVDTAFDGQEAVDLAKGNAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|302670905|ref|YP_003830865.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302395378|gb|ADL34283.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L + G+ V +G A + +R+ L + DI+MP MDGI L
Sbjct: 4 ILVCDDDKEIVEAIEIYLEEEGFRVFKAYDGVEALEILRQARIQLAIVDIMMPRMDGIRL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+F++ + A ++KPF+ +L+ V L
Sbjct: 64 VKEVR-RFSTIPVIFLSAKSEDADKILGLNIGADDYITKPFNPLELIARVKSNLRR 118
>gi|251779341|ref|ZP_04822261.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|243083656|gb|EES49546.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED++ +R F+ L + +EV+ G + L + D+++P +DG
Sbjct: 2 RRILLVEDEESIRGFIKINLKRNNFEVIEAECGEDGLKAAEKFSIDLAVLDVMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + P + ++ +T + KPF+ +L+ + +L
Sbjct: 62 KVCDELRKRYPKMGIIMLTARTQDMDKIMGLEYGADDYIIKPFNPLELILRIKAILRR 119
>gi|229159425|ref|ZP_04287444.1| Two-component response regulator [Bacillus cereus R309803]
gi|228624055|gb|EEK80862.1| Two-component response regulator [Bacillus cereus R309803]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVRE-SKEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|160894201|ref|ZP_02074979.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
gi|156864234|gb|EDO57665.1| hypothetical protein CLOL250_01755 [Clostridium sp. L2-50]
Length = 253
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61
+KIL+ +D+ D+R+ + L + GY+++ NG A D VRE L++ DI+MPEM G
Sbjct: 25 EKILIVDDEKDIRKLVGIYLKRQGYQILEAENGKQAIDLVRENSDIDLIIMDIMMPEMSG 84
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E E + V+F+T ++ LSKPF +LV +V L+
Sbjct: 85 TESCSAIRE-FSSVPVLFLTAKTQEPDKNEAYDTGGDDFLSKPFEQSELVRKVKALIRRY 143
Query: 122 N 122
N
Sbjct: 144 N 144
>gi|311696852|gb|ADP99725.1| two-component transcriptional regulator, winged helix family
[marine bacterium HP15]
Length = 241
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D D+R + + L + G V+ + G + ++R+ L++ DI+MP DG
Sbjct: 4 SPTILVVDDHRDIRDLVGRYLQEHGLRVLLADGGDAMKRQLRQHSVDLVVLDIMMPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R E +L V+ +T + L+KPF+ R+L+ + +L
Sbjct: 64 LTLCRYLREHT-ELPVILLTAMSEETDRIVGLEMGADDYLTKPFNPRELLARIKAVLRR 121
>gi|294628412|ref|ZP_06706972.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
gi|292831745|gb|EFF90094.1| DNA-binding response regulator TrcR [Streptomyces sp. e14]
Length = 249
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD D+ L AL G+EV + +GASA + R ++ D+++P+ DG+
Sbjct: 23 RVLVVDDDPDLAEVLSGALRYQGWEVRTAEDGASAVAEARALRPDAVVLDVMLPDTDGLT 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E+ PD+ V+ +T AV ++KPF L +++ + LL
Sbjct: 83 VLRRLHEVRPDVCVLLLTARDAVEDRIAGITAGGDDYVTKPFSLEEVIARLRGLLRR 139
>gi|239926895|ref|ZP_04683848.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
ATCC 14672]
gi|291435241|ref|ZP_06574631.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
ATCC 14672]
gi|291338136|gb|EFE65092.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces ghanaensis
ATCC 14672]
Length = 1385
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L AGY+V + +G +A VR L+++D++MP +DG+
Sbjct: 637 RLLVADDNADMREYLARLLHSAGYQVDTVKDGLAALQAVRAHAPDLVISDVMMPGLDGLG 696
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---LL 118
L + V+ ++ A + + L KPF +L+ V L
Sbjct: 697 LVAALRADPRTASVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVELA 756
Query: 119 TIKN 122
++N
Sbjct: 757 RLRN 760
>gi|228919194|ref|ZP_04082567.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|229176851|ref|ZP_04304250.1| Two-component response regulator [Bacillus cereus 172560W]
gi|229188529|ref|ZP_04315571.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228594957|gb|EEK52734.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228606633|gb|EEK64055.1| Two-component response regulator [Bacillus cereus 172560W]
gi|228840472|gb|EEM85740.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|171319254|ref|ZP_02908370.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|171095556|gb|EDT40520.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
Length = 239
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGTEGLRLLEQGNWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 122
>gi|148555150|ref|YP_001262732.1| two component transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148500340|gb|ABQ68594.1| two component transcriptional regulator, winged helix family
[Sphingomonas wittichii RW1]
Length = 236
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL EDD +R +AL + GY V G + EP L++ DI++P +G
Sbjct: 3 SSTILLVEDDPSLRVLTARALQENGYVVRPAATGPEMWIAFNAEPIDLIILDIMLPGTNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IEL R+ + D+ ++FI+ + L+KPF R+L+ V +L
Sbjct: 63 IELCRQLRQK-SDVPIIFISAKGSETDRVIGLEIGADDYLAKPFGTRELMARVRAVLRR 120
>gi|94969426|ref|YP_591474.1| multi-sensor signal transduction histidine kinase [Candidatus
Koribacter versatilis Ellin345]
gi|94551476|gb|ABF41400.1| multi-sensor signal transduction histidine kinase [Candidatus
Koribacter versatilis Ellin345]
Length = 1131
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LLA+D+ DMR ++ + LG Y + + +NG A + E+P L+LTD++MPEMDG EL
Sbjct: 653 LLADDNRDMREYIERLLGSR-YRIRAASNGKRALEMATEDPPDLVLTDVMMPEMDGFELL 711
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ A + L KPF R+LV V L +
Sbjct: 712 AALRANSATSTIPIIVLSARAGEEAQIEGLQHGADDYLVKPFSARELVARVENNLRL 768
>gi|145294164|ref|YP_001136985.1| hypothetical protein cgR_0122 [Corynebacterium glutamicum R]
gi|57157979|dbj|BAD83953.1| two-component system response regulator [Corynebacterium
glutamicum]
gi|140844084|dbj|BAF53083.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 240
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSVRELVTRVHAVLRR 129
>gi|75761320|ref|ZP_00741297.1| Two-component response regulator vanRB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74491192|gb|EAO54431.1| Two-component response regulator vanRB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 228
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y+V+ ++G + ++ F L+L D++MP ++G
Sbjct: 10 NYHILVVEDDQEIQELIKQFLMTQQYKVIVASDGLEGMKQFNKQSFDLILLDVMMPNLNG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+A+ ++ ++ +T ++KPF L+ V +L
Sbjct: 70 FEVAKMIRSQ-SNIPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLMRRVEAVLRRS 128
Query: 122 N 122
N
Sbjct: 129 N 129
>gi|229076471|ref|ZP_04209433.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
gi|229099686|ref|ZP_04230613.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
gi|228683756|gb|EEL37707.1| DNA-binding response regulator [Bacillus cereus Rock3-29]
gi|228706657|gb|EEL58868.1| DNA-binding response regulator [Bacillus cereus Rock4-18]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV+ +G A +K E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLVAADGREALEKWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D D+ V+ +T + + ++KPF+ +L+ V ++ +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN-MSRR 117
>gi|227502538|ref|ZP_03932587.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|306835103|ref|ZP_07468144.1| response regulator [Corynebacterium accolens ATCC 49726]
gi|227076700|gb|EEI14663.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|304569018|gb|EFM44542.1| response regulator [Corynebacterium accolens ATCC 49726]
Length = 236
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G+E + +G SA +K + ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFEPIIALDGPSALEKFADNDIDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T A ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKQLRA-TSSVPVIMVTARDAEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
Query: 121 KN 122
N
Sbjct: 119 GN 120
>gi|218778734|ref|YP_002430052.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
gi|218760118|gb|ACL02584.1| two component transcriptional regulator, winged helix family
[Desulfatibacillum alkenivorans AK-01]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 53/124 (42%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++ IL+ ED+ + L L AG+ + G A VR+E L+L DI++P
Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+E+ + + ++ +T + KPF R++V V +L
Sbjct: 61 KDGMEVCKELRS-FSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRSN 123
>gi|324325942|gb|ADY21202.1| two-component response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|295398894|ref|ZP_06808876.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|312110499|ref|YP_003988815.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|294978360|gb|EFG53956.1| two component transcriptional regulator, winged helix family
[Geobacillus thermoglucosidasius C56-YS93]
gi|311215600|gb|ADP74204.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ ED+ ++ RF+ L GYEV ++G + E + L+L D+++P ++
Sbjct: 1 MNHRVLIIEDEANLARFIELDLTHEGYEVRVSHDGREGLELALSEEWGLILLDVMLPSLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ IT +V + KPF + +L+ + L
Sbjct: 61 GMEVCRRIRAV-KQTPIIMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119
>gi|237797944|ref|ZP_04586405.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331020795|gb|EGI00852.1| osmolarity response regulator [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|254518597|ref|ZP_05130653.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226912346|gb|EEH97547.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 228
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL ED+ +R L K G+ ++ +G + L++ DI+MP++D
Sbjct: 5 MPKNILLIEDETRIRFLLRDYFLKEGFNIIEAADGDEGLNFFISNKIDLVILDIMMPKVD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + ++ + V+ +T ++KPF + L+ +V LL
Sbjct: 65 GITVLEMIRKV-STVPVILLTAKGQEEDKLFGYEMGADDYITKPFSPKILIAKVKALLKR 123
>gi|65317995|ref|ZP_00390954.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|228913258|ref|ZP_04076894.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228931999|ref|ZP_04094891.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228944325|ref|ZP_04106698.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228815227|gb|EEM61475.1| Two-component response regulator [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228827582|gb|EEM73324.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228846397|gb|EEM91413.1| Two-component response regulator [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG
Sbjct: 6 NMRLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 65 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 123
>gi|330963168|gb|EGH63428.1| sensory box protein/response regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 705
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GYE ++ +G A V E L+L DI+MP
Sbjct: 1 MTQPAATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDERAPDLILLDIMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + LSKP +L V
Sbjct: 61 GMDGYEVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|326384127|ref|ZP_08205810.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
gi|326197287|gb|EGD54478.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + R L L G+EV + GA A + + P +++ D+ +P+MDG
Sbjct: 6 HVLVVDDEPQLLRALRINLRARGFEVTTAATGAQALEAASKRPPDVVVLDLGLPDMDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ ++ A + ++KPF + + + + +
Sbjct: 66 VLAGLRGWTS-VPVIVLSARTDAADKVQALDAGADDYVTKPFGMEEFLARLRAAIRR 121
>gi|317489938|ref|ZP_07948430.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325829806|ref|ZP_08163264.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
gi|316910936|gb|EFV32553.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325487973|gb|EGC90410.1| putative sensory transduction protein RegX3 [Eggerthella sp. HGA1]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ +L+ EDD D+ L L + Y+V + NG + + + S++L D++MPEM+
Sbjct: 1 MNETVLIVEDDSDIIEILSLYLCGSDYQVETAANGKLGLELLERKSPSVILVDLMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + A L + ++ I+ + ++KPF +++ + +L
Sbjct: 61 GFDFIKEAR-LVSNAPIIIISARSQPTDKMLGLDLGADGYITKPFDPIEVLAYIRAVLRR 119
>gi|300782393|ref|YP_003762684.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299791907|gb|ADJ42282.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ G +A ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAAVAGTGQAALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTDVCKQLRQR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRR 118
>gi|260460551|ref|ZP_05808802.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
gi|259033656|gb|EEW34916.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ +R+ L LG GY + N A + + E L+L D+ +P M G
Sbjct: 5 NVRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMETEKPDLVLLDLGLPGMSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL R+ + D+ V+ ++ A ++ ++KPF + +LV + L K
Sbjct: 65 HELLRKWRDDGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHK 124
>gi|196036852|ref|ZP_03104240.1| DNA-binding response regulator [Bacillus cereus W]
gi|195990534|gb|EDX54514.1| DNA-binding response regulator [Bacillus cereus W]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRLLEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREE-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|146307499|ref|YP_001187964.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
gi|145575700|gb|ABP85232.1| two component transcriptional regulator, winged helix family
[Pseudomonas mendocina ymp]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L G+ V +G S + L++ DI++P +DG +
Sbjct: 2 RILVIEDNRDILANVLDYLQLKGFSVDCAQDGLSGLHLASSGHYDLIVLDIMLPGIDGYQ 61
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ ++ +T A+ L KPF L +LV + +L
Sbjct: 62 VCKRLREDGRSEVPILMLTARDALDDRLKGLNAGADDYLIKPFALSELVARIEAILRR 119
>gi|326383751|ref|ZP_08205436.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
B-59395]
gi|326197515|gb|EGD54704.1| two-component response regulator MprA [Gordonia neofelifaecis NRRL
B-59395]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 55/106 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V + +G A +KV E L++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLSFNGYTVETAGDGLEALEKVIAERPDLMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ RR DL ++ +T +V+ L KPF L +
Sbjct: 62 VCRRLRSAGDDLPILVLTARDSVSERVSGLDAGADDYLPKPFALEE 107
>gi|229079179|ref|ZP_04211727.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock4-2]
gi|228704105|gb|EEL56543.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock4-2]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 1 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 60 GLEVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 119
>gi|309778833|ref|ZP_07673604.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
gi|308922357|gb|EFP67983.1| DNA-binding response regulator OmpR [Ralstonia sp. 5_7_47FAA]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLTQQGFAVSVLHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDVPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|302535864|ref|ZP_07288206.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302444759|gb|EFL16575.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G D+ L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|256371018|ref|YP_003108842.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
gi|256007602|gb|ACU53169.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+D+ L+ L + G+E + N+G A R L+L D+++P + G++
Sbjct: 12 TVLIADDEPSFVEALVLGLTREGFETIVANDGEEALALSRSHHPDLILLDVMLPRLSGLD 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T + ++KPF + +LV + +
Sbjct: 72 VCRTIRQE-SSVPIIMVTARSGELDTVLGLELGADDYVTKPFRMSELVARIRAQMRR 127
>gi|227509078|ref|ZP_03939127.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227511985|ref|ZP_03942034.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227524971|ref|ZP_03955020.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227084793|gb|EEI20105.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227087883|gb|EEI23195.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227191465|gb|EEI71532.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE VS +G A K+R E L++ DI+MP M+GI
Sbjct: 2 KILVVDDDKEIAQLLEIYIRNEGYEPVSAYSGNEALTKLRTESDIGLMILDIMMPGMNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ ++KPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSQIPIIILSAKTEDMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|225377220|ref|ZP_03754441.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
16841]
gi|225210924|gb|EEG93278.1| hypothetical protein ROSEINA2194_02866 [Roseburia inulinivorans DSM
16841]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
++LLAED++D+ R L+ L Y V + +GA A D + + ++ DI+MP+MDGI
Sbjct: 6 RLLLAEDEEDLSRALVMVLKHNNYSVDAVYDGAEALDYLENGGNYDGVILDIMMPKMDGI 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T A + + L KPF +++L+ + + +
Sbjct: 66 TVLKTIRRHGNSVPVLLLTAKAEIDDRVEGLDSGADDYLPKPFSMKELLARIRAMTRRQ 124
>gi|197337852|ref|YP_002157772.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
gi|197315104|gb|ACH64553.1| transcriptional regulatory protein CpxR [Vibrio fischeri MJ11]
Length = 221
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD ++ L + L GY+V + G SA + ++ L+L D+++P++D
Sbjct: 1 MS-RILVVDDDIELCNLLQEVLQDEGYDVDCVHCGESALEFIQTHSIDLVLLDVMLPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ARR + ++ +T A D ++KPF++ +L+ + +L
Sbjct: 60 GYQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADHFIAKPFNVPELLARITAILRR 118
>gi|251797099|ref|YP_003011830.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247544725|gb|ACT01744.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL EDD MR F+ K ++V NG A + L++ DI+MPEMD
Sbjct: 1 MKRSILLVEDDTLMREFITDYFKKEQWDVHEAENGRVALELFERVSVDLIVLDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + RR E D+ ++ IT A + ++KP R LV N L+
Sbjct: 61 GWSVCRRIREK-SDVPIIMITARAEDEDQLMGFELGADEYVTKPLSPRVLVARANALMKR 119
>gi|163867364|ref|YP_001608558.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
gi|161017005|emb|CAK00563.1| transcriptional regulator BatR [Bartonella tribocorum CIP 105476]
Length = 240
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + DL V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVRAILRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|154502659|ref|ZP_02039719.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
gi|153796542|gb|EDN78962.1| hypothetical protein RUMGNA_00472 [Ruminococcus gnavus ATCC 29149]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E
Sbjct: 22 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + KV+ ++ + +A + + KPFHL++L V L K
Sbjct: 82 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 139
>gi|254252693|ref|ZP_04946011.1| Response regulator [Burkholderia dolosa AUO158]
gi|124895302|gb|EAY69182.1| Response regulator [Burkholderia dolosa AUO158]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122
Query: 119 TIK 121
+
Sbjct: 123 RRR 125
>gi|118477336|ref|YP_894487.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|118416561|gb|ABK84980.1| two-component response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 247
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MDGIEL
Sbjct: 21 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGIEL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 81 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 135
>gi|300865288|ref|ZP_07110102.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
gi|300336761|emb|CBN55252.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
Length = 403
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 1 MNQK------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI 54
MN K IL+ +D+ L L ++V+ +G SA +++ L+L D+
Sbjct: 1 MNIKNSERSIILIVDDNQTNLDVLFDFLRNCNFKVLVALDGESAIEQLEYVRPDLILLDV 60
Query: 55 VMPEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
+MP +DG E R + D+ V+F+T + ++KPF ++++
Sbjct: 61 MMPGIDGFETCSRLKAIPATKDIPVIFMTALSDTVNKVRGFQSGAVDYITKPFQHEEVLS 120
Query: 113 EVNRLLTI 120
+ LTI
Sbjct: 121 RIQTHLTI 128
>gi|239905419|ref|YP_002952158.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
gi|239795283|dbj|BAH74272.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD +R+ L L GYEV +G A + + S+++ DI+MP D
Sbjct: 1 MKDVVLIIDDDLKLRKMLGDYLAGYGYEVRELPDGGEAAKALEQLRPSVVILDIMMPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + V+ +T L KPF+LR+L+ + L
Sbjct: 61 GLEVLADIRRA-STVPVIMLTAKGDPMDRVVGLEMGADDYLPKPFNLRELLARIRAALRR 119
>gi|190892751|ref|YP_001979293.1| two-component response regulator protein [Rhizobium etli CIAT 652]
gi|190698030|gb|ACE92115.1| probable two-component response regulator protein [Rhizobium etli
CIAT 652]
gi|327188375|gb|EGE55592.1| putative two-component response regulator protein [Rhizobium etli
CNPAF512]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GI+
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGID 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|83747754|ref|ZP_00944788.1| PhoB [Ralstonia solanacearum UW551]
gi|207724004|ref|YP_002254402.1| phosphate regulon two-component response regulator protein
[Ralstonia solanacearum MolK2]
gi|207742914|ref|YP_002259306.1| phosphate regulon two-component response regulator protein
[Ralstonia solanacearum IPO1609]
gi|83725526|gb|EAP72670.1| PhoB [Ralstonia solanacearum UW551]
gi|206589212|emb|CAQ36174.1| phosphate regulon two-component response regulator protein
[Ralstonia solanacearum MolK2]
gi|206594309|emb|CAQ61236.1| phosphate regulon two-component response regulator protein
[Ralstonia solanacearum IPO1609]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ A+ E + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|317405401|gb|EFV85716.1| sensor protein [Achromobacter xylosoxidans C54]
Length = 744
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL A+D+ D+R +L L A Y+V +GA+A R++P L++TDI+MP MDG+
Sbjct: 225 RILCADDNADLREYLRSLL-AADYDVRIAADGATALRSARQDPPDLVITDIMMPGMDGLT 283
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ ++ A + L KPF +L V L +
Sbjct: 284 LLQALRGDARTRTVPVILLSARAGQEARVEGLDAGADDYLVKPFSPAELQARVGAHLRL 342
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ D L G +V +G A + E +++L DI MP MDG E
Sbjct: 604 RILVVDDNTDSADTTAMVLQAFGAQVGVARDGRQALAMLDEFAPAVMLVDIGMPGMDGHE 663
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ARR + ++ +TG+ S+ L KP L + L +
Sbjct: 664 VARRVRSAPSGQGVVLIAMTGWGQDEDRRHSHEAGFDHHLVKPVDFAALEQLLVSLARRR 723
>gi|300703822|ref|YP_003745424.1| DNA-binding response regulator in two-component regulatory system
with phor [Ralstonia solanacearum CFBP2957]
gi|299071485|emb|CBJ42807.1| DNA-binding response regulator in two-component regulatory system
with phoR [Ralstonia solanacearum CFBP2957]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ A+ E + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVMFAKELRANERTRQIPIIMLTARSEEQDKIMGLDVGADDYVTKPFSPKELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|228961520|ref|ZP_04123130.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228798138|gb|EEM45141.1| DNA-binding response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|220916290|ref|YP_002491594.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954144|gb|ACL64528.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
Length = 481
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 58/118 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L
Sbjct: 8 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RA EL DL V+ I+G A + D+ SKP ++ V L+ ++
Sbjct: 68 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125
>gi|145300000|ref|YP_001142841.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
gi|142852772|gb|ABO91093.1| two-component system hybrid sensor histidine kinase/response
regulator [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 1145
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L L GY ++ ++G A K+ +EP L+L D++MP + G ++
Sbjct: 738 ILVVDDEPINLHILRHLLQPCGYRILPSSDGHDALAKLAQEPVDLILLDVMMPTLSGFDV 797
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR E P L V+ +T + L KPF +L V LL
Sbjct: 798 CRRLREQHPKDKLPVLLLTALNQPKDIEEGFNAGANDYLVKPFCKEELFARVKALLE 854
>gi|119511609|ref|ZP_01630716.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119463770|gb|EAW44700.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD R + L +GY VV+ N+G A V L++TDI+MP M+
Sbjct: 1 MPLTILVVDDDLGTRLSISDYLELSGYSVVTANDGQEALAMVDNYHPDLIVTDIIMPRMN 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL RR + L V+ +T L KPF L +L + LL
Sbjct: 61 GYELVRRVRQQPAFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|17351926|gb|AAL38199.1|AF319443_1 putative response regulator RR23 [Listeria monocytogenes]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + + + L G+ V+ ++G A V E L + D++MP MD
Sbjct: 1 MKQ-ILVVDDDRHILKLVGHYLRAEGFHVLEASDGVEAEKIVETEQVHLAVIDVMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
G EL ++ PD+ V+ +T A+A ++KPF +L+
Sbjct: 60 GFELCQKMRASYPDIPVIMLTAKDALADKSRGFEVGTDDYVTKPFEPEELI 110
>gi|42779728|ref|NP_976975.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|217958170|ref|YP_002336714.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229137383|ref|ZP_04265995.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|229194895|ref|ZP_04321678.1| Two-component response regulator [Bacillus cereus m1293]
gi|42735645|gb|AAS39583.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|217066134|gb|ACJ80384.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228588599|gb|EEK46634.1| Two-component response regulator [Bacillus cereus m1293]
gi|228646082|gb|EEL02304.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|324324624|gb|ADY19884.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIVLLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTIGADDYITKPFDEHVLVARIEAILRR 118
>gi|302672185|ref|YP_003832145.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302396658|gb|ADL35563.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +DD+++ + L K +E CN+G SA + +L+L D+++P +DG
Sbjct: 4 KQKILIVDDDNNIAELISLYLIKECFETRICNDGESAINTFDTFEPNLVLLDLMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ V + KPF ++LV V +L
Sbjct: 64 YQVCREIR-TKSQVPIIMLSAKGEVFDKVLGLEMGADDYMEKPFDSKELVARVKAVLRR 121
>gi|293399743|ref|ZP_06643889.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306143|gb|EFE47386.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ ++ R + + L + Y V +C NG A ++ + +++ DI+MP +DG+E
Sbjct: 2 RILLAEDEKELNRIVCERLREEQYSVDACLNGEEALAFLQVMEYDVVILDIMMPIVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+ +T ++ L KPF +L+ + LL
Sbjct: 62 VLQTLRANGKQVPVLMLTAKDSIQDRVKGLDAGADDYLVKPFAFDELLARIRVLLR 117
>gi|289646445|ref|ZP_06477788.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
str. 2250]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|228910361|ref|ZP_04074177.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis IBL 200]
gi|228849313|gb|EEM94151.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis IBL 200]
Length = 241
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +LV V +
Sbjct: 72 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELVARVKAGIRR 130
>gi|148658695|ref|YP_001278900.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148570805|gb|ABQ92950.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 245
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+A+DD + + L YE+V+ NG A E F +++ D++MP +DG
Sbjct: 19 RRILIADDDPSIAMLIQVTLKDPRYEIVAVKNGLEALKAFNESKFDVVILDVMMPYVDGF 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R E D+ ++ +T ++KPF +L+ V+ +L
Sbjct: 79 EACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135
>gi|86358612|ref|YP_470504.1| two-component response regulator protein [Rhizobium etli CFN 42]
gi|86282714|gb|ABC91777.1| probable two-component response regulator protein [Rhizobium etli
CFN 42]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V +GA A K+ F L++ D++MP GI+
Sbjct: 13 HLLVVDDDSRIRALLNRYLAENGFRVTVAADGAEAQRKLAGLDFDLIIMDVMMPGESGID 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++ +T A + LSKPF R+LV +N +L
Sbjct: 73 VTRGLRAI-KNVPIIMLTALAESGNRIEGLEAGADDYLSKPFDPRELVLRINNILRR 128
>gi|89096124|ref|ZP_01169017.1| two-component response regulator [Bacillus sp. NRRL B-14911]
gi|89088978|gb|EAR68086.1| two-component response regulator [Bacillus sp. NRRL B-14911]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++LL EDD + + + L K G+ V + G ++ E F L+L D+++PE
Sbjct: 1 MAKQARLLLVEDDGQIAKIISDHLRKYGFSVAWASTGKEGLEEFAAEAFDLVLVDLMLPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG L R + ++ ++ I+ + ++KPF L +L + L
Sbjct: 61 LDGFTLLRTIRKTH-EIPMLIISARSEDESKVKGFNLGADDYITKPFSLEELSARITSHL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|330957179|gb|EGH57439.1| osmolarity response regulator [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|290769859|gb|ADD61631.1| putative protein [uncultured organism]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|294509055|ref|YP_003565944.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
gi|294352359|gb|ADE72681.1| DNA-binding response regulator [Bacillus megaterium QM B1551]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ ++ + GY V+ NG A D+++ L++ D++MP+MD
Sbjct: 1 MQESILVVDDELEIVDIISDIFEDRGYRVLKAYNGEQALDQLKTN-VDLIILDVMMPQMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + E ++F++ + ++KPF +++L+ V L
Sbjct: 60 GFDLCKVIREQ-IYCPILFLSAKHSEMDKVKGFTLGGDDYITKPFQVKELIARVEAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|213965034|ref|ZP_03393233.1| transcriptional regulatory protein [Corynebacterium amycolatum
SK46]
gi|213952570|gb|EEB63953.1| transcriptional regulatory protein [Corynebacterium amycolatum
SK46]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+ + L L + G+EV +G A + + ++L D+++P M
Sbjct: 1 MTE-VLIVEDETALAEPLAFLLQREGFEVRMAADGQEALAEFSKAEPDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + L + V+ +T ++KP+ R+L+ + +L
Sbjct: 60 GTEVCKNIR-LKSSVPVIMVTARDTEIDKVVGLEIGADDYVTKPYSSRELIARIRAVLRR 118
>gi|212691822|ref|ZP_03299950.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
gi|237708028|ref|ZP_04538509.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|237724821|ref|ZP_04555302.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|265756177|ref|ZP_06090506.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|212665578|gb|EEB26150.1| hypothetical protein BACDOR_01317 [Bacteroides dorei DSM 17855]
gi|229437016|gb|EEO47093.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|229457856|gb|EEO63577.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|263233768|gb|EEZ19377.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1329
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 9/128 (7%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ ED+DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G
Sbjct: 1070 TQRILVVEDNDDLREYLFHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRG 1128
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV----- 114
EL L + V+ +T + K L KPF++ L +
Sbjct: 1129 DELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILT 1188
Query: 115 -NRLLTIK 121
LL K
Sbjct: 1189 NRALLRRK 1196
>gi|254472023|ref|ZP_05085424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
gi|211959225|gb|EEA94424.1| DNA-binding response regulator [Pseudovibrio sp. JE062]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+Q IL+ +D D+R L + L K + A+A ++ L++ DI+MP
Sbjct: 1 MSQSTAHILIVDDHRDIRESLARYLTKNNMRTTVAESAAAARKVLKNSSIDLVVLDIMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R E + V+ +T A ++KPF+ R+L+ + +
Sbjct: 61 GEDGLSLCRHLVETN-QAPVILLTAMAEDTDRVVGLEIGADDYVTKPFNPRELLARIRAV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|149277238|ref|ZP_01883380.1| two-component system response regulator [Pedobacter sp. BAL39]
gi|149232115|gb|EDM37492.1| two-component system response regulator [Pedobacter sp. BAL39]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL EDD ++ L L G ++VV C +G ++ F L + D++MP+ DG
Sbjct: 2 KTILLVEDDPNLGLLLQDYLQLKGKFDVVLCMDGDEGLKAFSKQDFDLCILDVMMPKKDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + +L+ + ++F T A + + ++KPF + +L+ +N LL
Sbjct: 62 FTLGKEIRKLNQQVPIIFATAKAMIEDKASAYDLGGDDYITKPFRIEELLLRINALLKR 120
>gi|254245751|ref|ZP_04939072.1| Response regulator receiver [Burkholderia cenocepacia PC184]
gi|124870527|gb|EAY62243.1| Response regulator receiver [Burkholderia cenocepacia PC184]
Length = 235
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 3 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122
Query: 119 TIK 121
+
Sbjct: 123 RRR 125
>gi|71737975|ref|YP_272551.1| osmolarity response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257481801|ref|ZP_05635842.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
11528]
gi|289627977|ref|ZP_06460931.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|298485217|ref|ZP_07003310.1| Two-component system response regulator OmpR [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|71558528|gb|AAZ37739.1| DNA-binding response regulator OmpR [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298160205|gb|EFI01233.1| Two-component system response regulator OmpR [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|320322224|gb|EFW78320.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
str. B076]
gi|320331860|gb|EFW87798.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330866570|gb|EGH01279.1| osmolarity response regulator [Pseudomonas syringae pv. aesculi
str. 0893_23]
gi|330873006|gb|EGH07155.1| osmolarity response regulator [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330890972|gb|EGH23633.1| osmolarity response regulator [Pseudomonas syringae pv. mori str.
301020]
gi|330986823|gb|EGH84926.1| osmolarity response regulator [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331009435|gb|EGH89491.1| osmolarity response regulator [Pseudomonas syringae pv. tabaci ATCC
11528]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|325262670|ref|ZP_08129406.1| regulatory protein VanR [Clostridium sp. D5]
gi|324031764|gb|EGB93043.1| regulatory protein VanR [Clostridium sp. D5]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L + + + A++ + E L L D++MPE+D
Sbjct: 8 MREKILIVDDEKEIADLVECYLQNEDFTIFKYYDSREAWECIVREEPDLALMDVMMPEID 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L R+ E V+ +T ++KPF ++V V L
Sbjct: 68 GFTLCRQIRERY-HFPVIMLTAKGEEIDKITGLTLGADDYIAKPFLPLEMVARVKAQLRR 126
>gi|309789803|ref|ZP_07684382.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
gi|308228107|gb|EFO81756.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L G+ V +G SA R L++ D+++P +DGIE
Sbjct: 5 TILVVDDEQPIVDLVASYLAAEGFAVQRAYDGPSALTLARACRPDLVILDVMLPGLDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+ +T + L+KPF R+LV V +L
Sbjct: 65 VCRRLHQETA-VYVLMLTARTDEVDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120
>gi|229019758|ref|ZP_04176562.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1273]
gi|229025985|ref|ZP_04182372.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1272]
gi|228735316|gb|EEL85924.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1272]
gi|228741540|gb|EEL91736.1| Uncharacterized sensory transduction protein ycbL [Bacillus cereus
AH1273]
Length = 241
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + L K G++V ++G + + F L++ DI+MP++D
Sbjct: 12 MSHHILLVEDDISIQEMVETYLVKEGFQVTIASDGEEGVNTYLKGSFDLIILDIMMPKLD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 72 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 130
>gi|327462258|gb|EGF08585.1| DNA-binding response regulator [Streptococcus sanguinis SK1]
gi|332360674|gb|EGJ38483.1| DNA-binding response regulator [Streptococcus sanguinis SK49]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ +G + R++ L++TDI+MP MD
Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLELFRKKSVDLIITDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 125
>gi|325962194|ref|YP_004240100.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468281|gb|ADX71966.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ L LGK G+EV +NG A + L+L D+ +P
Sbjct: 1 MS-RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + V+ +T A ++KP+ R+LV V +L
Sbjct: 60 GTEVCRQLRQR-SSVPVIMLTAKDAEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|309389284|gb|ADO77164.1| two component transcriptional regulator, winged helix family
[Halanaerobium praevalens DSM 2228]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ +R+ + L + Y++ NG A + F L++ D+++P++ G
Sbjct: 2 EKILIVEDEAKIRKLIKSYLAEE-YKLKEAANGKKALSLFKNNNFDLIILDLMLPKISGE 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ D+ ++ +T ++ L+KPF R+L+ V LL
Sbjct: 61 EVCQNIRQI-SDIPIIMLTAKSSEEHKIAGFNYGADDYLTKPFSPRELLVRVKALLRR 117
>gi|291569601|dbj|BAI91873.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 379
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L LG Y+V NG A V +P L+L DI MPEMDG ++
Sbjct: 11 ILIVDDTPDNLRVLSATLGDRDYDVQCAINGQLALMAVANQPPDLVLLDIKMPEMDGYQV 70
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+F++ V + A ++KPF + +++ V LTI+
Sbjct: 71 CEALKSQQKTADIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTIR 129
>gi|257457919|ref|ZP_05623078.1| acetoacetate metabolism regulatory protein AtoC [Treponema
vincentii ATCC 35580]
gi|257444632|gb|EEV19716.1| acetoacetate metabolism regulatory protein AtoC [Treponema
vincentii ATCC 35580]
Length = 456
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++R L AL GYEV++ +G K E L++TD+ MP +
Sbjct: 1 MKFKILVIDDEKNIREGLQMALEDEGYEVLTAEDGTDGLQKALSEVVDLVITDLRMPGVG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR T P + V+ +TG V ++ L+KP L L V R L
Sbjct: 61 GQEILRRVTSETPGVPVIVLTGHGTVEAAVEAMRMGAYDFLTKPLDLDRLSLLVKRALQN 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|297563243|ref|YP_003682217.1| two component transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847691|gb|ADH69711.1| two component transcriptional regulator, winged helix family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G A + L+L D+++P +
Sbjct: 1 MT-RVLVVEDEESYSDALSYMLRKEGFEVAVAPTGTVALETFDRTGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ V+ +T + ++KPF R+LV + +L
Sbjct: 60 GTEVCRTLRQK-SNVPVIMLTAKDSEIDKVVGLELGADDYVTKPFSSRELVARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|194291903|ref|YP_002007810.1| response regulator, ompr family [Cupriavidus taiwanensis LMG 19424]
gi|193225807|emb|CAQ71753.1| putative response regulator, OmpR family [Cupriavidus taiwanensis
LMG 19424]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + + +L AGY V + +G A+ EEP+ ++ D+ +P +DG+
Sbjct: 2 RILLVEDEATLAAQVRASLADAGYAVDTAADGLDAWHLGAEEPYDAVILDLGLPRLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + V+ +T + + LSKPF + +L+ + L+ +
Sbjct: 62 VLRRWRAAQVNAPVLILTARDSWTEKVEGIDAGADDYLSKPFRMEELLARIRALIRRAH 120
>gi|170016759|ref|YP_001727678.1| response regulator [Leuconostoc citreum KM20]
gi|169803616|gb|ACA82234.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Leuconostoc citreum
KM20]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYEV + +G S D E + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFIGLELKHEGYEVETVLDGRSGLDSALENNYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLRESKK-TPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|148273950|ref|YP_001223511.1| putative two-component system, response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831880|emb|CAN02850.1| putative two-component system, response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 257
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ + NG A RE ++ DI++P++DG++
Sbjct: 32 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 91
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T ++ ++KPF L ++V + L+
Sbjct: 92 VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 148
>gi|94495598|ref|ZP_01302178.1| two component transcriptional regulator, winged helix family
protein [Sphingomonas sp. SKA58]
gi|94424986|gb|EAT10007.1| two component transcriptional regulator, winged helix family
protein [Sphingomonas sp. SKA58]
Length = 240
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ + +LL +D+ +R L + L + G+ V + ++ A A ++ L++ DI+MP
Sbjct: 2 MSDRPHLLLVDDERSIREPLAQYLSRNGFRVTAVDSAAEARVRLNANAIDLVILDIMMPG 61
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ L R E ++ V+ +T + + KPF R+LV + +
Sbjct: 62 EDGLSLCRHIRE-TSEIPVILLTAKSEETDRIVGLEMGADDYVLKPFSPRELVARIKVIF 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|56750542|ref|YP_171243.1| phosphate sensor two-component response regulator [Synechococcus
elongatus PCC 6301]
gi|81299821|ref|YP_400029.1| two component transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|730805|sp|P39663|SPHR_SYNE7 RecName: Full=Alkaline phosphatase synthesis transcriptional
regulatory protein sphR
gi|391921|dbj|BAA02453.1| SphR [Synechococcus elongatus PCC 7942]
gi|56685501|dbj|BAD78723.1| phosphate sensor two-component response regulator [Synechococcus
elongatus PCC 6301]
gi|81168702|gb|ABB57042.1| two component transcriptional regulator, winged helix family
[Synechococcus elongatus PCC 7942]
Length = 257
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---------EPFSLLLTDI 54
+IL+ ED+ +R + L + G+ V +G +A + R E L++ D+
Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P ++G++ R + ++ ++ L+KPF R+LV
Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144
Query: 115 NRLLTI 120
LL
Sbjct: 145 RALLRR 150
>gi|328883264|emb|CCA56503.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G S D R + + L D+++P M
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERDGFRVTAMPDGLSGLDAFRAQRPDIALLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF L+ + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLMARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|312143607|ref|YP_003995053.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
gi|311904258|gb|ADQ14699.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R+ + L YEV NG A + F+L++ D+++P++ G +
Sbjct: 3 KILIVEDEYKIRKIITSYLE-EDYEVYEAENGEKALKLFADNNFNLIILDLMIPKLSGEK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ + + ++ +T ++ D ++KPF R+L + +L N
Sbjct: 62 VCQKIRQ-SSQIPIIMLTAKSSEENKIDGFNYGTDDYITKPFSPRELKARIKAVLRRSN 119
>gi|302339427|ref|YP_003804633.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
11293]
gi|301636612|gb|ADK82039.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
11293]
Length = 515
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ R L+ AL K GY NG A +KV ++P L+L D++MP++ G
Sbjct: 9 HVLVVDDEAINRLLLVTALKKRGYLPEEAANGKDALEKVEQKPPDLILLDVMMPDLTGFG 68
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E D+ V+ +T + + + +SKP ++ +L+ V LL I+
Sbjct: 69 VCRSLKERKETADIPVILVTALHSREDIEEGIKAGADEFISKPVNINELMVRVRTLLKIR 128
>gi|291561456|emb|CBL40255.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D++ MR+ + L GY V+ +G A D +E+ SL++ D++MP+MDG
Sbjct: 5 KILMVDDEERMRKLVKDFLTIKGYRVLEAGDGEQAIDIFFKEKDISLVILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + + ++ +T + + ++KPF + LV + +L
Sbjct: 65 ETCKTIR-RYSQVPIIMLTARSEERDELLGFELGVDEYITKPFSPKILVARIEAILRR 121
>gi|302559780|ref|ZP_07312122.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
gi|302477398|gb|EFL40491.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
Length = 249
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 24 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGQGALRTAREFRPDAVVLDMMLPDMDGLA 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 84 ILGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 140
>gi|237795357|ref|YP_002862909.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|229261731|gb|ACQ52764.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+DD+ F+ GY +++ +NG A + + ++L DI+MP +D
Sbjct: 1 MLEKILIVDDEDDIVSFIKDYFQDQGYSIITASNGREAIEYCDK-DIDIILLDIMMPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++F++ + + + KPF +++L V L
Sbjct: 60 GFQICQKIRDKVS-CPIIFLSARQSEFDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|229050930|ref|ZP_04194480.1| DNA-binding response regulator [Bacillus cereus AH676]
gi|228722388|gb|EEL73783.1| DNA-binding response regulator [Bacillus cereus AH676]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|229168168|ref|ZP_04295895.1| DNA-binding response regulator [Bacillus cereus AH621]
gi|228615263|gb|EEK72361.1| DNA-binding response regulator [Bacillus cereus AH621]
Length = 233
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A L++ DI+MP MDG
Sbjct: 12 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 72 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128
>gi|171914500|ref|ZP_02929970.1| two component transcriptional regulator, winged helix family
protein [Verrucomicrobium spinosum DSM 4136]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AEDD R L + L G+ VV +G A++ + + + D++MP +DG E
Sbjct: 2 KILIAEDDSFTRAALCEVLSAEGFGVVPAADGREAWELFKSQRPDFVCLDVMMPHLDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D + ++F+T + ++KPF +R+++ + +
Sbjct: 62 VCRRIRRDDDTVPILFLTAKSEEIDAVLGLELGADDYMAKPFGVREILARIRAITRR 118
>gi|218899692|ref|YP_002448103.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218541203|gb|ACK93597.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 1 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 119
>gi|114777962|ref|ZP_01452876.1| Two comoponent transcriptional regulator, winged helix family
protein [Mariprofundus ferrooxydans PV-1]
gi|114551749|gb|EAU54301.1| Two comoponent transcriptional regulator, winged helix family
protein [Mariprofundus ferrooxydans PV-1]
Length = 227
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ + + L G++V ++G S +++++ F L + DI+MP +G++L
Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + L V+ +T + KP + R+L + +L +
Sbjct: 63 LRELRQ-SSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSD 119
>gi|50083860|ref|YP_045370.1| OmpR family transcriptional regulator [Acinetobacter sp. ADP1]
gi|49529836|emb|CAG67548.1| transcriptional regulator protein (OmpR family), response regulator
in two-component regulatory system with BaeS, regulates
RNA synthesis [Acinetobacter sp. ADP1]
Length = 228
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ++L ED+ ++ + L +G+EV ++G AY+ + +L++ D+++P MDG+
Sbjct: 2 KHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E DL ++ +T + KPF ++LV V +L
Sbjct: 62 TICRKVREQ-SDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRR 118
>gi|148546293|ref|YP_001266395.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148510351|gb|ABQ77211.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 260
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD ++R L L ++G++V + +G + P L++ D+++P+ DG
Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144
>gi|107025470|ref|YP_622981.1| two component transcriptional regulator [Burkholderia cenocepacia
AU 1054]
gi|254249878|ref|ZP_04943198.1| Response regulator receiver [Burkholderia cenocepacia PC184]
gi|105894844|gb|ABF78008.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia AU 1054]
gi|124876379|gb|EAY66369.1| Response regulator receiver [Burkholderia cenocepacia PC184]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|47564364|ref|ZP_00235409.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|47558516|gb|EAL16839.1| DNA-binding response regulator [Bacillus cereus G9241]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNHTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|257886294|ref|ZP_05665947.1| transcriptional regulator [Enterococcus faecium 1,231,501]
gi|257822150|gb|EEV49280.1| transcriptional regulator [Enterococcus faecium 1,231,501]
Length = 222
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 1 MN-RILVVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L D+ V+ IT A ++KP + +++ V LL
Sbjct: 60 GYDLVGSLRNARFDMPVLMITAKADFENKKRGFKLGADDYMTKPIDVNEMILRVEALLRR 119
>gi|225026937|ref|ZP_03716129.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
gi|224955748|gb|EEG36957.1| hypothetical protein EUBHAL_01193 [Eubacterium hallii DSM 3353]
Length = 248
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V A + L + DI++P+M+
Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ +T ++KPF ++V V L
Sbjct: 78 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 136
>gi|160939367|ref|ZP_02086717.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
BAA-613]
gi|158437577|gb|EDP15339.1| hypothetical protein CLOBOL_04260 [Clostridium bolteae ATCC
BAA-613]
gi|291540515|emb|CBL13626.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|311747935|ref|ZP_07721720.1| DNA-binding response regulator [Algoriphagus sp. PR1]
gi|126574903|gb|EAZ79261.1| DNA-binding response regulator [Algoriphagus sp. PR1]
Length = 222
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L + + V +NG S + + LLL D ++P + GIE
Sbjct: 2 RILVVEDEPGISNFLKQGLEEEAFAVDLADNGKSGLELALSGSYDLLLLDWMLPGISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + D ++F+T V + KPFH +L+ + L K
Sbjct: 62 LTRQFRKQFSDTPIIFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIRVQLRAK 119
>gi|116621283|ref|YP_823439.1| two component heavy metal response transcriptional regulator
[Candidatus Solibacter usitatus Ellin6076]
gi|116224445|gb|ABJ83154.1| two component heavy metal response transcriptional regulator,
winged helix family [Candidatus Solibacter usitatus
Ellin6076]
Length = 238
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L AGY V + G +A D + + + L++ D ++P+MDG++
Sbjct: 2 RILVVEDEKRIADFLCRGLEGAGYAVDAALTGGAALDLIHDTDYDLVVLDRMLPDMDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ ++ A+ L KPF +L+ V LL
Sbjct: 62 VLEKMRSRKAGPPVLILSARGALDDRVKGLEQGADDYLVKPFAFVELLARVRALLRR 118
>gi|330969228|gb|EGH69294.1| PAS:GGDEF protein [Pseudomonas syringae pv. aceris str. M302273PT]
Length = 705
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G A ++ + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|320162523|ref|YP_004175748.1| putative response regulator [Anaerolinea thermophila UNI-1]
gi|319996377|dbj|BAJ65148.1| putative response regulator [Anaerolinea thermophila UNI-1]
Length = 325
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L AGY V++ NG A R+ L+L+DI+MP MDG +
Sbjct: 9 RILLVEDDGSLLEVVRDILSDAGYHVITAANGEEALQAFRQAHPDLILSDIMMPVMDGFQ 68
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +++ + +F++ ++ L KPF +L+ V L +
Sbjct: 69 LLEAVRQMEAGMLVPFIFLSARTERYDTSNARRLGADDYLFKPFSADELLTAVEARLRRR 128
>gi|296156476|ref|ZP_06839314.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295893075|gb|EFG72855.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L L K G V NG + + L++ D++MP DG+
Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L KPF +R+L+ + +L
Sbjct: 66 LCRELRAGKFRSVPVVMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRR 123
>gi|302879220|ref|YP_003847784.1| two component transcriptional regulator, winged helix family
[Gallionella capsiferriformans ES-2]
gi|302582009|gb|ADL56020.1| two component transcriptional regulator, winged helix family
[Gallionella capsiferriformans ES-2]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL +DD ++ L L + G+EV + ++G S + + + + D++MP
Sbjct: 6 MKTKVLLVDDDVELAGMLRVYLEREGFEVKAVHDGESGITEALQGHHDIAVLDVMMPGKS 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + + V+ +T A + KP R+L + +L
Sbjct: 66 GIDVLVQIRAQGA-MPVLMLTARGDDADRIIGLELGADDYVPKPCTPRELTARIRAILRR 124
Query: 121 KN 122
+
Sbjct: 125 SS 126
>gi|224586406|ref|YP_002640205.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224470934|gb|ACN48764.1| putative two-component response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF ++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPHEVSARVRTLLRR 121
>gi|254427358|ref|ZP_05041065.1| phosphate regulon transcriptional regulatory protein PhoB
[Alcanivorax sp. DG881]
gi|196193527|gb|EDX88486.1| phosphate regulon transcriptional regulatory protein PhoB
[Alcanivorax sp. DG881]
Length = 234
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ +D+ +R + AL A ++V+ N ++ + +E L+L D ++P +
Sbjct: 1 MSRNRILIVDDEPAIREMVAVALELADFDVLEAENAQRGHEIIVDERPDLVLLDWMLPSV 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR E ++ ++ +T + ++KPF R+L++ + +
Sbjct: 61 TGIELARRLKRDETTNEVPIIMLTAKSEEDNKIQGLDVGADDYITKPFSTRELISRIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|170737378|ref|YP_001778638.1| two component transcriptional regulator [Burkholderia cenocepacia
MC0-3]
gi|169819566|gb|ACA94148.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia MC0-3]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|166031344|ref|ZP_02234173.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
27755]
gi|166028749|gb|EDR47506.1| hypothetical protein DORFOR_01031 [Dorea formicigenerans ATCC
27755]
Length = 231
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L + G++V+ +G A + +++E LL+ DI+MP MDGI
Sbjct: 3 KILVCDDDKEIVEAIEIYLTQDGHQVLEAYDGIEAVEILKKESVDLLIMDIMMPRMDGIR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ ++ + A ++KPF+ +LV V L
Sbjct: 63 ATLKIREKH-NIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSHLRR 118
>gi|163756173|ref|ZP_02163288.1| two-component system, transcriptional regulatory protein [Kordia
algicida OT-1]
gi|161323785|gb|EDP95119.1| two-component system, transcriptional regulatory protein [Kordia
algicida OT-1]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y+VV NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLSMNDYDVVHAKNGMEGFEKFKKDNYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNTEVPIIFLTAKALKEDVMKGYKVGADDYLNKPFDSEVLLMKIKAIMQRK 124
>gi|294638191|ref|ZP_06716446.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
gi|291088686|gb|EFE21247.1| DNA-binding response regulator VicR [Edwardsiella tarda ATCC 23685]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++IL+ EDD + L L AGY V G + + + L+ D+++P +
Sbjct: 1 MTEKRILVVEDDTLIAELLTLHLSDAGYHVTHAAEGDRGMALIEQGGWDALILDLMLPGV 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ RR + ++ I+ ++ L+KPF + +LV V L
Sbjct: 61 DGLDICRRVRAMTRYTPIIIISARSSEPHRVLGLELGADDYLAKPFSMVELVARVKALFR 120
Query: 120 IK 121
+
Sbjct: 121 RQ 122
>gi|229072725|ref|ZP_04205927.1| DNA-binding response regulator [Bacillus cereus F65185]
gi|228710701|gb|EEL62674.1| DNA-binding response regulator [Bacillus cereus F65185]
Length = 224
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ + +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARR 118
>gi|196228091|ref|ZP_03126958.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196227494|gb|EDY21997.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 226
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+DD L L G+ ++ +G A + LL DI+MP++DG E
Sbjct: 2 TILLADDDPITLDSLRACLEPEGFTALAARHGGEALALWEKHRPDLLCLDIMMPQVDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D + V+F++ + + KPF +L+ + L
Sbjct: 62 VCRRVRAADAQVPVLFLSAKSEEIDVVVGLQLGADDFIRKPFGKHELLARIRAALRR 118
>gi|187928843|ref|YP_001899330.1| winged helix family two component heavy metal response
transcriptional regulator [Ralstonia pickettii 12J]
gi|187725733|gb|ACD26898.1| two component heavy metal response transcriptional regulator,
winged helix family [Ralstonia pickettii 12J]
Length = 225
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L K L ++G+ V NNG E + +++ D+++P MDG
Sbjct: 2 RVLVVEDEPRTAEYLQKGLSESGFVVDIANNGGDGLHMAEETDYDVIILDVMLPGMDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+F+T VA L KPF +L+ + R L
Sbjct: 62 VIKSIRSK-SETPVLFLTALDDVADRVRGFELGADDYLVKPFAFAELLARIRRCLR 116
>gi|78061250|ref|YP_371158.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77969135|gb|ABB10514.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 246
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D++MP
Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|15840463|ref|NP_335500.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
CDC1551]
gi|254231325|ref|ZP_04924652.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis C]
gi|13880635|gb|AAK45314.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
CDC1551]
gi|124600384|gb|EAY59394.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis C]
Length = 276
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V ++G A K + +L+ DI++P++DG+E
Sbjct: 52 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 111
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR E D +F+T +V ++KPF L +LV + LL +
Sbjct: 112 ILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 170
>gi|148264043|ref|YP_001230749.1| two component heavy metal response transcriptional regulator
[Geobacter uraniireducens Rf4]
gi|146397543|gb|ABQ26176.1| two component heavy metal response transcriptional regulator,
winged helix family [Geobacter uraniireducens Rf4]
Length = 223
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ FL K L ++G+ V N+G D + L++ D+++P +DG +
Sbjct: 2 RILVVEDEIKTSAFLRKGLRESGFTVDVANDGEEGLDLALSREYDLIILDVMLPGVDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D V+F+T AV L KPF +L+ + +L
Sbjct: 62 IIKRIRGTKRDTPVLFLTARDAVQDRIKGLELGADDYLVKPFAFSELLARIRTILRR 118
>gi|324992962|gb|EGC24882.1| DNA-binding response regulator [Streptococcus sanguinis SK405]
gi|324995730|gb|EGC27642.1| DNA-binding response regulator [Streptococcus sanguinis SK678]
Length = 237
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ +G D R++ L++TDI+MP MD
Sbjct: 6 MGKTILLVDDEMDILDIKKRYLVQAGYQVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 66 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 125
>gi|322412685|gb|EFY03593.1| DNA-binding response regulator [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 228
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L +AGY++ ++GA A D R++ + L+++DI+MP MD
Sbjct: 1 MAYKILLVDDELEITDINKRYLQQAGYQITVASDGAQALDVFRKDHYHLIISDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + P+ +FIT + S + +SKPF R+LV V +L
Sbjct: 61 GYDFIGEVLLEKPEQPFLFITAKLSEPDKIYSLSLGADDFISKPFSPRELVLRVKNILNR 120
>gi|310828574|ref|YP_003960931.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
gi|308740308|gb|ADO37968.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
Length = 232
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ +DD + L K + G+E ++G +K+ E L++ D++MP +D
Sbjct: 1 MKNRIIIIDDDPKLCALLEKCVTCDGFEAACASDGREGLEKLEEGSPVLVVLDVMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E + V+ +T L+KPF + + V+ L+
Sbjct: 61 GFEVLRKIRE-TSAVPVLMLTARDDNIDKVYGLRLGADDYLTKPFDINEFSARVHSLVRR 119
>gi|293376811|ref|ZP_06623031.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
gi|292644563|gb|EFF62653.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ ED+ ++R L L ++G+ V ++G K + ++L DI++P+ D
Sbjct: 1 MSKRILVVEDEFSIQRILQYDLTQSGFLVDLASDGEEGLKKALVNDYDVILLDIMLPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++ ++KPF R++V+++ ++
Sbjct: 61 GFAVCKELRAQNISTYIVMLSARDDELDRVSGLDFGADDYMTKPFSSREVVSKIKAIIRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|257063309|ref|YP_003142981.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
gi|256790962|gb|ACV21632.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Slackia heliotrinireducens DSM
20476]
Length = 242
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + + L AG + +C++G A D +EPF L+L DI+MP MDG E
Sbjct: 12 KILVVDDDQGITTLVAEVLASAGMDAAACHSGYDALDVFAKEPFDLVLIDIMMPGMDGFE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L ++ D ++F+T + + + KPF R+LV + L
Sbjct: 72 LCANLRQVT-DAPIVFLTAKDGESDLVVGLSLGADDYIVKPFRPRELVARIRARLR 126
>gi|225866652|ref|YP_002752030.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|225790714|gb|ACO30931.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 229
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGEMGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|158338729|ref|YP_001519906.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
gi|158308970|gb|ABW30587.1| diguanylate cyclase (GGDEF) [Acaryochloris marina MBIC11017]
Length = 333
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D R L L + GYEV+ NG A V + L+L DI MPEMDG
Sbjct: 35 KILLVDDQPQNLRLLTDVLEEQGYEVLQALNGNVALQAVSLDQPQLILLDIQMPEMDGYT 94
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+F++ + + ++KPF + +++ V L I+
Sbjct: 95 VCQKLKADPSTQDIPVVFVSALDESWDKVKAFSVGGVDYITKPFKVVEVLARVQNQLKIQ 154
>gi|154496221|ref|ZP_02034917.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
29799]
gi|150274304|gb|EDN01381.1| hypothetical protein BACCAP_00506 [Bacteroides capillosus ATCC
29799]
Length = 230
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+D MR + K AGYE+ C +G +A ++ RE L++ DI++P +D
Sbjct: 1 MAERILIVDDEDKMRSLVAKHARHAGYEIAECADGHAAVERCREGGVDLVILDIMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E R D+ V+ ++ + KPF R+L+ V +L
Sbjct: 61 GYEALRAIR-TFSDVPVLMLSVHGEEQDKVRGFKLGVDDFMVKPFSPRELMYRVAAILKR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|282866274|ref|ZP_06275320.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282558860|gb|EFB64416.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 225
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G +A D + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPTALDAGLQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRGEGLAVPILVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|218705751|ref|YP_002413270.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
UMN026]
gi|293405687|ref|ZP_06649679.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
FVEC1412]
gi|298381369|ref|ZP_06990968.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
FVEC1302]
gi|300897713|ref|ZP_07116110.1| response regulator receiver domain protein [Escherichia coli MS
198-1]
gi|218432848|emb|CAR13742.1| fused response regulator of ato opeon, in two-component system with
AtoS: response regulator ; sigma54 interaction protein
[Escherichia coli UMN026]
gi|291427895|gb|EFF00922.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
FVEC1412]
gi|298278811|gb|EFI20325.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
FVEC1302]
gi|300358553|gb|EFJ74423.1| response regulator receiver domain protein [Escherichia coli MS
198-1]
Length = 461
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|126651421|ref|ZP_01723625.1| two-component response regulator [Bacillus sp. B14905]
gi|126591674|gb|EAZ85770.1| two-component response regulator [Bacillus sp. B14905]
Length = 233
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL +D+ M L L G++ + ++ A + EE L+L DI+MPEMDG
Sbjct: 2 KTILCIDDEPRMLDLLTLYLEP-GFQCRAMSSIQDALIYLEEEHVDLVLLDIMMPEMDGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ +T + + KPF +L+ ++ +L
Sbjct: 61 QVCEEIRKFW-HVPIIMLTAKGEHSDIVKGLNIGADDYILKPFDEEELLARIHAVLRR 117
>gi|95928222|ref|ZP_01310970.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
gi|95135493|gb|EAT17144.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
Length = 239
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDGI 62
+ILL ED+ + + LI L + GYEV+ G A + +E FSL + D ++P +DG+
Sbjct: 7 RILLVEDEQHIAQGLIFNLQQEGYEVIHAITGEEALHSLDKESFSLAILDRMLPGKIDGL 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R DP L V+ +T L KPF L +L+ V +L +
Sbjct: 67 EICRHIRRADPQLPVLMLTAMNREQDRVAGLGEGADDYLGKPFSLDELLLRVAGMLRRQ 125
>gi|95929449|ref|ZP_01312192.1| response regulator receiver sensor signal transduction histidine
kinase [Desulfuromonas acetoxidans DSM 684]
gi|95134565|gb|EAT16221.1| response regulator receiver sensor signal transduction histidine
kinase [Desulfuromonas acetoxidans DSM 684]
Length = 397
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ + L GYEV + +G + E+P SL+L D +MP MDG
Sbjct: 3 TEHILVIDDEKAILDLCRMILSSRGYEVRTAASGMEGLRLIAEQPPSLVLLDYMMPVMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ + PD+ V+ TG + + + + + KPF+ DL++ ++ +L +
Sbjct: 63 MSVLKQIRQDYPDVYVIMFTGKGSETVAVEVMKAGASDYVLKPFNNHDLLDRIDSVLKFR 122
>gi|330503901|ref|YP_004380770.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
gi|328918188|gb|AEB59019.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina NK-01]
Length = 773
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L K GY+V+ +G A + + ++P L+L D MP MDG E
Sbjct: 651 RVLLVEDNPVNQMVAKGMLTKLGYQVLVAGHGGEALEILEQQPVDLVLMDCNMPVMDGYE 710
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+RR P+L ++ +T A A L+KPF +L ++ L
Sbjct: 711 ASRRIRSNGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDAWL 767
>gi|307324561|ref|ZP_07603768.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306889805|gb|EFN20784.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 257
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD+ +RR + AL + GY V + +G + R LLL D+++P +DGI
Sbjct: 15 TVLLVEDDEVIRRSVGMALERYGYRVSTAGDGLTGLALFRAGGHDLLLLDVMLPGLDGIG 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D ++ ++ + KP LV + LL
Sbjct: 75 LCRRIRETSMD-PILMMSARGDDLDVISGLEAGADDYVVKPVDTAVLVARIRSLLRR 130
>gi|306833226|ref|ZP_07466355.1| response regulator [Streptococcus bovis ATCC 700338]
gi|304424593|gb|EFM27730.1| response regulator [Streptococcus bovis ATCC 700338]
Length = 233
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +LL ED+ +R + L GY ++ NG +A + ++L D+ +P+M
Sbjct: 1 MNKTLVLLVEDNSSVRNLMTTTLKAHGYRYLTAPNGDAAILEASSHNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ ++ + ++ I+ + D+ L+KPF + +L+ +
Sbjct: 61 DGVEVIKKIRS-WSSMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLR 115
>gi|172035594|ref|YP_001802095.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|171697048|gb|ACB50029.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 219
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +LL +DD ++ + L GYEV + NG A + + ++ +++ D++MPEMDG
Sbjct: 12 NKHLLLVDDDPNLVLLVKDYLEFQGYEVTTAENGKEALEVLTKQIPDMIICDVMMPEMDG 71
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + + VMF++ + KPF +LV +V L
Sbjct: 72 YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131
>gi|146301202|ref|YP_001195793.1| two component transcriptional regulator [Flavobacterium johnsoniae
UW101]
gi|146155620|gb|ABQ06474.1| two component transcriptional regulator, winged helix family
[Flavobacterium johnsoniae UW101]
Length = 238
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++ILL EDD + L L +EV NG ++K +++ + L + D++MP DG
Sbjct: 5 NKRILLVEDDLNFGAVLKDYLMLNDFEVTLAKNGMEGFEKFKKDVYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T + L+KPF L+ ++ ++ K
Sbjct: 65 YTLAKEIREKNSEVPIIFLTAKSMKEDVLKGYKAGADDYLNKPFDSEVLLMKIKAIIQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|89899892|ref|YP_522363.1| two component transcriptional regulator [Rhodoferax ferrireducens
T118]
gi|89344629|gb|ABD68832.1| two component transcriptional regulator, winged helix family
[Rhodoferax ferrireducens T118]
Length = 239
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ EDD+ +R L L +AG+ V ++G A + F ++ D+ +P++
Sbjct: 1 MS-HLLIVEDDELLRDALGAQLTQAGHTVTPASDGERAQALLESNRFDGVILDLGLPKVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + P L V+ +T V L+KPF + +L + +L
Sbjct: 60 GMEVLRWLRKRLPALPVLVLTARDGVEDRVQGLNAGADDYLTKPFSMAELQARLGAMLRR 119
>gi|29346092|ref|NP_809595.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|29337986|gb|AAO75789.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
Length = 245
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ ++ F+ + L + G+ V C++G + + ++EEPF L++ DI+MP+++G+E
Sbjct: 24 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 83
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ V+ +T L KPF ++L + LL
Sbjct: 84 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 141
>gi|67924013|ref|ZP_00517465.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
watsonii WH 8501]
gi|67854153|gb|EAM49460.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase A, N-terminal [Crocosphaera
watsonii WH 8501]
Length = 377
Score = 145 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GY+V NG +A + + + P L+L DI MP M+G E+
Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTICQVPPDLILLDINMPSMNGYEV 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E D+ V+FI+ V + +SKPF +++ + LTI+
Sbjct: 68 CQQLKEDVKTKDIPVIFISALDDVLDKVKAFDVGGVDYISKPFQTEEVIARIENQLTIQ 126
>gi|332882310|ref|ZP_08449938.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332679694|gb|EGJ52663.1| transcriptional activator protein IrlR [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ ++ F+ + L + G+EV ++G +A+ +++ F LL+ D++MP+MDG+E
Sbjct: 8 KILLAEDEQNIASFIRRGLQEFGHEVQVAHDGGTAWAMLQKGVFDLLVLDVIMPKMDGLE 67
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + +T L KPF ++L + LL
Sbjct: 68 VCRQFRLKEGYHTPAIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 125
>gi|318041739|ref|ZP_07973695.1| two component transcriptional regulator [Synechococcus sp. CB0101]
Length = 234
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 60/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDDD +R + +AL G+ V + NG SA+D + + + L++ D+++P ++G++
Sbjct: 12 RLLVVEDDDTIRETVAEALEMEGFAVTAATNGRSAWDLLSRDSYDLVVLDLMLPGINGLD 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + ++ ++ L KPF +R+LV LL +
Sbjct: 72 LCRQLRQGSTPPLILVVSARDTETDRVLGLEVGADDYLIKPFGMRELVARCRALLRRQ 129
>gi|315607267|ref|ZP_07882267.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315250970|gb|EFU30959.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 1302
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD DM FL GY VV+ NGA ++++E SL+++D +MP MDG E
Sbjct: 1058 TVLIVEDDADMSGFLAANFRP-GYRVVTAENGAEGLERLKEHTVSLIVSDWMMPVMDGAE 1116
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ +T + + KPF ++ L + +L ++
Sbjct: 1117 FCRRVRADRNTSHIPLVMLTAKTDDDSKAEGMECGADAYIEKPFSMKYLEACIRNMLDMR 1176
>gi|303234314|ref|ZP_07320954.1| putative DNA-binding response regulator MtrA [Finegoldia magna
BVS033A4]
gi|302494567|gb|EFL54333.1| putative DNA-binding response regulator MtrA [Finegoldia magna
BVS033A4]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ D+ + L K YEV C G A + + SL++ D+++P M+
Sbjct: 1 MS-RILIVEDELDLANIIKDYLVKELYEVEICTEGDKAIEIFDKFKPSLVILDLMLPGMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + + ++ ++ ++KPF R+L+ VN L
Sbjct: 60 GYEICQNIR-IKSTIPILILSAKIDEFDKVKGLNLGADDYITKPFRPRELLARVNAQLRR 118
>gi|300118891|ref|ZP_07056604.1| DNA-binding response regulator [Bacillus cereus SJ1]
gi|298723736|gb|EFI64465.1| DNA-binding response regulator [Bacillus cereus SJ1]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|229825404|ref|ZP_04451473.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
49176]
gi|229790408|gb|EEP26522.1| hypothetical protein GCWU000182_00760 [Abiotrophia defectiva ATCC
49176]
Length = 236
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ ED+ ++ + K L GYEV +C +G A++ + E + L++ D+ +P++DG
Sbjct: 12 KMRILVVEDEQELCESVAKGLRLDGYEVDTCFDGEEAWEIISVESYDLIILDLNLPKLDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + D + V+ ++ + D L KPFH +L V L +
Sbjct: 72 MEVLKNIRAEDNETSVLILSARGGLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRR 131
>gi|229134252|ref|ZP_04263067.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
gi|228649182|gb|EEL05202.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD ++R + L G+ +G A L++ DI+MP MDG
Sbjct: 12 TILVADDDANIRELVCLFLRNDGFATAEAADGKEALAVYISTNVDLVVLDIMMPIMDGWT 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L++ +PDL ++ +T L+KPF +L V LL
Sbjct: 72 LSKELRRANPDLPLLMLTARGETWEKVKGFELGTDDYLTKPFDPLELTVRVRALLKR 128
>gi|225387787|ref|ZP_03757551.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
DSM 15981]
gi|225046121|gb|EEG56367.1| hypothetical protein CLOSTASPAR_01557 [Clostridium asparagiforme
DSM 15981]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV NNG+S ++ E F L + D+++P D
Sbjct: 1 MS-KILIVEDEESIAELEKDYLELSGFEVEIENNGSSGLERALNEEFDLFILDLMLPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E+ + ++ ++ ++KPF ++V V +
Sbjct: 60 GFEICKKIREV-KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118
>gi|167745958|ref|ZP_02418085.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
gi|317473358|ref|ZP_07932653.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|167654473|gb|EDR98602.1| hypothetical protein ANACAC_00653 [Anaerostipes caccae DSM 14662]
gi|316899194|gb|EFV21213.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q +L+ +D+ ++ F+ L YEV +GA A + V++E L + D+++P++
Sbjct: 1 MKQSNVLVVDDEKEIADFIELYLKNENYEVFKYYSGAGALECVKQEQIDLAILDVMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + + + V+ +T A + + KPF +L+ V L
Sbjct: 61 DGFEILKEIRKDH-NFPVIMLTAKTASMDKINGLTLGADDYIEKPFEPLELMARVKAQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|27378817|ref|NP_770346.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
gi|27351966|dbj|BAC48971.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 273
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ Q IL+ EDD + R + + L + + V NG + + L++ D+++P
Sbjct: 37 MSTQSILIVEDDQETRNLVARYLRENSFNVGMAANGREMDRYISQNRVDLIVLDLMLPGE 96
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR +D ++ +T L KPF+ R+L+ +N +L
Sbjct: 97 DGLSLCRRLR-VDTTTPIIILTAKGDDVDRILGLEMGADDYLPKPFNPRELLARINAVLR 155
Query: 120 IK 121
+
Sbjct: 156 RQ 157
>gi|119357020|ref|YP_911664.1| two component transcriptional regulator [Chlorobium
phaeobacteroides DSM 266]
gi|119354369|gb|ABL65240.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides DSM 266]
Length = 222
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L + + V +G + D + L++ D ++P + GIE
Sbjct: 2 RILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMAILNEYDLMIVDWMIPGISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + ++F+T + + KPF +L+ + L N
Sbjct: 62 VCRQVRKAGSSVPIIFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120
>gi|302188802|ref|ZP_07265475.1| PAS:GGDEF [Pseudomonas syringae pv. syringae 642]
Length = 705
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G A ++ + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMIKRQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQIKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|268325500|emb|CBH39088.1| conserved hypothetical protein containing response regulator
receiver domain [uncultured archaeon]
Length = 170
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ D L +AL + VV +G A +KVR E L+L D+++P+++G E
Sbjct: 49 KILIVDDELDTLLPLKRALEMEDFNVVEAQDGIEALEKVRSEIPDLVLLDLMLPKINGFE 108
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E + ++ +T + + ++KPF+L +L + +L
Sbjct: 109 VCQRLKHDEATSYIPIIMLTAKGETSDKVEGIEIGADDYVTKPFNLDELKARIKAVLRR 167
>gi|167746354|ref|ZP_02418481.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
gi|167654347|gb|EDR98476.1| hypothetical protein ANACAC_01063 [Anaerostipes caccae DSM 14662]
Length = 245
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q KIL+ +DD ++ + K L GY+VV NG A D + E+ LL+ DI+MP M
Sbjct: 11 MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + E ++ ++ ++ + + +SKPF +L+ V L
Sbjct: 71 DGLSATMKIRE-SKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|108797330|ref|YP_637527.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
gi|119866415|ref|YP_936367.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
gi|108767749|gb|ABG06471.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. MCS]
gi|119692504|gb|ABL89577.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. KMS]
Length = 1390
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ DMR +L L AGYEV + ++G A + +R E L+++D++MP +DG+E
Sbjct: 638 RILIADDNADMRAYLTGLLRGAGYEVTAVSDGRQALESIRAELPDLVVSDVMMPGLDGLE 697
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR--LL- 118
L L V+ ++ A + + L KPF +L+ V+ L
Sbjct: 698 LVAALRAESRTAALPVLLLSARAGQESSIEGLHAGADDYLVKPFAAAELLARVHANVALA 757
Query: 119 TIKN 122
++N
Sbjct: 758 RLRN 761
>gi|163940874|ref|YP_001645758.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163863071|gb|ABY44130.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V C NG A D + + L++ DI++P +DG++
Sbjct: 2 RVLIVEDEKDLQNILVKRLNAEYYSVDGCGNGEDALDYISMATYDLIVLDIMIPGIDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNTTPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|325285800|ref|YP_004261590.1| winged helix family two component transcriptional regulator
[Cellulophaga lytica DSM 7489]
gi|324321254|gb|ADY28719.1| two component transcriptional regulator, winged helix family
[Cellulophaga lytica DSM 7489]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GYEV + NG A K +++ L++ D++MP
Sbjct: 1 MKKKDIKILLVDDEPDILEIVSYNLSSEGYEVFTAKNGVEAVAKAKKKHPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACEIIRNTPGLQNTIITFLTARGEDYSQVAGFDAGADDCITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|313677457|ref|YP_004055453.1| two component transcriptional regulator, winged helix family
[Marivirga tractuosa DSM 4126]
gi|312944155|gb|ADR23345.1| two component transcriptional regulator, winged helix family
[Marivirga tractuosa DSM 4126]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ +D+ D+ L L K GYEV + +G +A +K ++ L+L DI+MP DG
Sbjct: 6 SHKVLVVDDESDILELLEYNLTKEGYEVETAQDGKTAVEKAQKFQPQLILLDIMMPNQDG 65
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E R+ E + ++F+T + + ++KP R L++ +N
Sbjct: 66 VETCRQLRETPESANSFIIFLTARSEEYSEVAAFENGADDYITKPIKPRALMSRINAYFR 125
Query: 120 I 120
Sbjct: 126 R 126
>gi|228921864|ref|ZP_04085177.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228837789|gb|EEM83117.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 236
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + +R + + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLHVLQRLRGDNNETPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|220911625|ref|YP_002486934.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
gi|219858503|gb|ACL38845.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ L LGK G+EV +NG A + L+L D+ +P
Sbjct: 1 MS-RILIVEDEESFSDPLSYLLGKEGFEVEVVDNGLDAITEFDRNGADLVLLDLQLPGQS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + V+ +T + ++KP+ R+LV V +L
Sbjct: 60 GTEVCRQLRQR-STVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|167032026|ref|YP_001667257.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166858514|gb|ABY96921.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD ++R L L ++G++V + +G + P L++ D+++P+ DG
Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRRALESTPCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125
>gi|126737842|ref|ZP_01753572.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. SK209-2-6]
gi|126721235|gb|EBA17939.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. SK209-2-6]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ NG V E+ +++ D +MP + GIE
Sbjct: 7 TVLIVEDELAQREVLAYNLEADGFRVLKAENGEEGLLVVDEQMPDVIVLDWMMPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +LV V L
Sbjct: 67 VCRRLKSRTETRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELVARVRTQLRR 125
>gi|16331577|ref|NP_442305.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1001644|dbj|BAA10375.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ E+++ + RF+ L GY+V +G + + +E P L++ + +P M
Sbjct: 1 MSHRVLVVEEEEKLARFMELELKYEGYDVSVARDGLKGFTQAQEFPPDLIIVNGALPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR E+ + ++ IT V + KPF+ + + L
Sbjct: 61 GLELCRRLREMGSRIPIILITAKDDVEERVMGLDAGADDYIVKPFNSDEFFARIRVQLRR 120
Query: 121 KN 122
+
Sbjct: 121 TH 122
>gi|16331756|ref|NP_442484.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1001717|dbj|BAA10554.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 262
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-------FSLLLTDI 54
+ +IL+ ED+ +R ++ +L + GYEV + ++G A ++E L++ DI
Sbjct: 30 SHRILVVEDEVSIRETIVLSLQEEGYEVYAVDDGRDALALLQEFSEDPGQAAVDLIILDI 89
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P+++G+++ R + ++ ++ + ++KPF L++LV
Sbjct: 90 MLPQVNGLDVCRSLRFGGDNTPILIVSAKGSEMEKVTGLEVGADDYITKPFSLKELVARC 149
Query: 115 NRLLTIK 121
++ +
Sbjct: 150 RAMIRRQ 156
>gi|163846512|ref|YP_001634556.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222524297|ref|YP_002568768.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163667801|gb|ABY34167.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222448176|gb|ACM52442.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD ++ + L + GY V+ +G A +R++ L++ DI++P++DG+
Sbjct: 5 ETILVVEDDSGLQELIRVRLEQEGYHVIQTISGLEAIKIIRQQRPDLVILDIMLPDLDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E L ++ +T + KPF+ +L+ + LL
Sbjct: 65 TVCQKVRE-FASLPILMLTARTMPEDIITGLNQGADDYVIKPFNYDELLARIRALLRR 121
>gi|329896463|ref|ZP_08271541.1| putative two-component response regulatory protein [gamma
proteobacterium IMCC3088]
gi|328921781|gb|EGG29153.1| putative two-component response regulatory protein [gamma
proteobacterium IMCC3088]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + EDD + R L L +AG++ + ++G A + F L L D+++P+ DG +
Sbjct: 4 IAIIEDDPKIARLLADYLTQAGFDTATAHSGQEALSLATSQHFDLFLLDVMLPDGDGFSV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ L ++F+T A + KPF R++V V L
Sbjct: 64 CKQLR-LFSSAPILFLTARIAEEDRLLGLELGGDDYIVKPFSPREVVARVKANLRR 118
>gi|325291012|ref|YP_004267193.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324966413|gb|ADY57192.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + L AG+ V C +G + + ++++E + LL+ DI++P +DG+
Sbjct: 16 KKILIVEDDPSIAELQKDYLEVAGFAVKICADGLAGFQEIQKESYDLLIIDIMLPGLDGL 75
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---- 118
E+ RR E D+ V+ ++ + ++KPF +LV V L
Sbjct: 76 EILRRMNEE-KDIPVLLVSAKKEEIDKIKGFSLGADDYITKPFSPGELVARVKAHLENYE 134
Query: 119 TIKN 122
+KN
Sbjct: 135 RLKN 138
>gi|323528571|ref|YP_004230723.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323385573|gb|ADX57663.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R + L K G V NG + + L++ D++MP DG+
Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L KPF +R+L+ + +L
Sbjct: 66 LCRELRAGKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRR 123
>gi|160880125|ref|YP_001559093.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428791|gb|ABX42354.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 240
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N+KIL+ +D++D+ + L L K G+E + + +G + + ++L DI++P+ +
Sbjct: 7 NKKILIIDDEEDILKLLSMVLKKEGFENIYTAEDGEGGFTLFKRISPDIILLDIMLPDEE 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + ++ ++FI+ A ++KPF +++ + +L
Sbjct: 67 GYEVCKKIRK-SSNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRIKAILRR 125
Query: 121 KN 122
+
Sbjct: 126 SS 127
>gi|148378266|ref|YP_001252807.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153932068|ref|YP_001382668.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153935185|ref|YP_001386219.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148287750|emb|CAL81816.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152928112|gb|ABS33612.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152931099|gb|ABS36598.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 225
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A +K E LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKQSEFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRRE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|30260742|ref|NP_843119.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47525860|ref|YP_017209.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183580|ref|YP_026832.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|170708227|ref|ZP_02898673.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|229603745|ref|YP_002865187.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|30254191|gb|AAP24605.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47501008|gb|AAT29684.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177507|gb|AAT52883.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|170126883|gb|EDS95764.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|229268153|gb|ACQ49790.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|89096132|ref|ZP_01169025.1| two-component response regulator [Bacillus sp. NRRL B-14911]
gi|89088986|gb|EAR68094.1| two-component response regulator [Bacillus sp. NRRL B-14911]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +L+ +D+ ++R + L G V+ +G A + + E L++ D++MP +DG
Sbjct: 3 NYNVLVVDDEKEIRDAIEIYLKNEGITVLKAGDGIEALEMLNEHQVHLIVLDVMMPNLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 63 ISATYKIREK-KNIPIIILSAKSEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120
>gi|330816276|ref|YP_004359981.1| Response regulator [Burkholderia gladioli BSR3]
gi|327368669|gb|AEA60025.1| Response regulator [Burkholderia gladioli BSR3]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCAIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARELRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|323485029|ref|ZP_08090382.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
WAL-14163]
gi|323693598|ref|ZP_08107799.1| vanr protein [Clostridium symbiosum WAL-14673]
gi|323401585|gb|EGA93930.1| hypothetical protein HMPREF9474_02133 [Clostridium symbiosum
WAL-14163]
gi|323502335|gb|EGB18196.1| vanr protein [Clostridium symbiosum WAL-14673]
Length = 235
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L +V +G A + F L + DI++P++
Sbjct: 1 MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+ +T ++KPF +LV V L
Sbjct: 61 GLSICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120
>gi|320533794|ref|ZP_08034390.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320133999|gb|EFW26351.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 242
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +LL +D+ +RR L L + GY V+ ++GA A D + ++++D++MP MDG
Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR ++ +T A + LSKPF +L + + +L
Sbjct: 70 RELVRRVRAAGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRR 128
>gi|91203277|emb|CAJ72916.1| conserved hypothetical protein [Candidatus Kuenenia
stuttgartiensis]
Length = 238
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D + L L YEV+ +G A +K R E L+L DI+MP++ G E
Sbjct: 3 KILVADDITQNVKLLRVILTAFKYEVIEAYDGEEALNKARTENPDLILLDIMMPKITGYE 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E ++ ++ IT + +SKPF+ +L+ V LL +
Sbjct: 63 VCKKLRADEATKNIPIIMITALHEMDDRIKGIEAGADDFISKPFNKTELLARVKSLLRPR 122
>gi|13472444|ref|NP_104011.1| two-component response regulator [Mesorhizobium loti MAFF303099]
gi|14023190|dbj|BAB49797.1| two-component response regulator [Mesorhizobium loti MAFF303099]
Length = 238
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD +R L + K G +G +R L++ D+++P G
Sbjct: 4 DAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGTEMEAVLRRAQVDLIVLDVMLPGKSG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL R ++ +T + KPF R+L+ + +L
Sbjct: 64 LELCRDLRAQYS-TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121
>gi|65322038|ref|ZP_00394997.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
Length = 232
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL ED+ + L ++V ++G + +E + L++ DI++P+
Sbjct: 1 MSKLKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 61 MNGFEICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHI 119
Query: 119 TI 120
+
Sbjct: 120 SR 121
>gi|297538855|ref|YP_003674624.1| winged helix family two component transcriptional regulator
[Methylotenera sp. 301]
gi|297258202|gb|ADI30047.1| two component transcriptional regulator, winged helix family
[Methylotenera sp. 301]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +LL +DD ++ L + + + + V ++G + + E+PF +++ D++MP ++GI
Sbjct: 2 QTVLLIDDDVELVEMLKEYIEQENFSVQVAHDGIAGAQMLLEQPFDIVVLDVMMPRLNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + + ++ V+ +T + KP R+LV + +L
Sbjct: 62 ETLKAIRQ-HSNVPVIMLTAKGDNTDRIVGLELGADDYVPKPSSPRELVARIRAILRR 118
>gi|229544295|ref|ZP_04433354.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229325434|gb|EEN91110.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ ++ RF+ L GYEV +G EE + ++L D+++P+++G+
Sbjct: 2 KRILLVEDEKNLARFIELELRHEGYEVKVAYDGREGLQSALEEDWDVILLDLMLPKLNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + + V+ IT ++ + KPF + +L+ + +
Sbjct: 62 EVCRRLRQE-KETPVIMITARDSIMDRVSGLDHGADDYIVKPFAIEELLARLRAIFRR 118
>gi|229013874|ref|ZP_04171002.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
gi|228747543|gb|EEL97418.1| hypothetical protein bmyco0001_42830 [Bacillus mycoides DSM 2048]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G + + +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGETGLQRALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|253578578|ref|ZP_04855850.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|257413775|ref|ZP_04744208.2| subtilin biosynthesis regulatory protein SpaR [Roseburia
intestinalis L1-82]
gi|251850896|gb|EES78854.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
gi|257202423|gb|EEV00708.1| subtilin biosynthesis regulatory protein SpaR [Roseburia
intestinalis L1-82]
Length = 235
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D+ D+ L + K GY V + NG A + + + ++L DI MP+M+
Sbjct: 12 MAQSILIVDDERDIVSMLNQYFCKIGYVVYTAINGKEALNAITKH-PDIILLDINMPDMN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + ++F+T A + KPF + +L V L
Sbjct: 71 GFTICEKIRNFVS-CPIIFLTARIEDCDKIKGFAVGGDDYVVKPFSVDELEARVAAHLRR 129
Query: 121 K 121
+
Sbjct: 130 E 130
>gi|261418620|ref|YP_003252302.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|319765436|ref|YP_004130937.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261375077|gb|ACX77820.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|317110302|gb|ADU92794.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 232
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD+D+ + + L Y+V + ++GA A + L++ DI+M +DG
Sbjct: 3 NKKILVVDDDEDICLTIKQYLELHHYQVETVHSGAEALKMI-SGDVDLIILDIMMEGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL R + D ++F++ + + ++KPF L++L ++ L +
Sbjct: 62 MELCRMIRDR-VDCPILFVSAKTLEEDKVQALSIGGDDYITKPFSLKELKARIDSHLRRE 120
>gi|103486250|ref|YP_615811.1| two component transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98976327|gb|ABF52478.1| two component transcriptional regulator, winged helix family
[Sphingopyxis alaskensis RB2256]
Length = 244
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R L + L G+ V + A A +R + L+++DI+MP DG+
Sbjct: 8 RILLIDDEPSIREPLGEYLTAQGFAVTDAASAAEARSVLRAKSVDLVVSDIMMPGEDGLS 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ +T A + KPF+ R+LV + +L
Sbjct: 68 LTRHLRE-TSSIPVILLTARAEDTERIIGLEIGADDYVVKPFNPRELVARIRTVLRR 123
>gi|330962179|gb|EGH62439.1| sensory box protein/response regulator [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 705
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L Y ++ +G A + V L+L DI+MP
Sbjct: 1 MTQSAATILIVDDDVHVRDLLEVLLQNQNYRTLTAESGEVALEMVELHAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKANKSTANIPIIMLSALDQQSARLSGLEAGAEEYLNKPVDSSELWLRVR 120
Query: 116 RLLTIKN 122
LL +K+
Sbjct: 121 NLLRLKS 127
>gi|331088816|ref|ZP_08337726.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330407339|gb|EGG86842.1| hypothetical protein HMPREF1025_01309 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 65/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K+L ++GYEV CN+G A D + E + L++ D+ +P +DG+E
Sbjct: 2 RLLVVEDEKKLCDMIAKSLHQSGYEVDVCNDGEEALDMIYAEMYDLIVLDLNLPGVDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + KV+ ++ + +A + + KPFHL++L V L K
Sbjct: 62 ILRELRKEDEETKVLILSARSQIADKIEGLDAGANDYMEKPFHLQELEARVRSLTRRK 119
>gi|313884757|ref|ZP_07818512.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
gi|312620018|gb|EFR31452.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Eremococcus coleocola ACS-139-V-Col8]
Length = 232
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
++L+ +D+ ++ L L Y+V+ +G A D + + L+L DI+MP+ +G+
Sbjct: 2 RVLVVDDEKEIVELLTIYLKNESYDVLQAFDGVEALDLIAKNDDIDLVLLDIMMPKKNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + + V+F+T A ++KPF+ +++ + L +
Sbjct: 62 EVLEEIRKQGLNFPVIFLTAKATDTDKITGLFAGADDYVAKPFNPLEVIARIKSLFRRQ 120
>gi|288555603|ref|YP_003427538.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
gi|288546763|gb|ADC50646.1| DNA-binding response regulator [Bacillus pseudofirmus OF4]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +L+ EDDD +R + L K GY+V+ +G +A ++ + L++ D+++P++
Sbjct: 1 MKQLVLVVEDDDMIRDLIDIYLKKEGYDVILAADGETAKEQFLKYSPCLVILDLMLPKIS 60
Query: 61 GIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ + ++ ++ +T + ++KPF +L+ + +L
Sbjct: 61 GEEVCQWIRAQERNEVSIIMVTAKTSSDHKISGLKMGADDYVTKPFSPNELMARIEAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|225867234|ref|YP_002752612.1| DNA-binding response regulator [Bacillus cereus 03BB102]
gi|225788675|gb|ACO28892.1| DNA-binding response regulator [Bacillus cereus 03BB102]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G +A ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGRAALERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|169828429|ref|YP_001698587.1| regulatory protein [Lysinibacillus sphaericus C3-41]
gi|168992917|gb|ACA40457.1| Regulatory protein [Lysinibacillus sphaericus C3-41]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+D+R + L G E + + + ++ L++ DI+MP+MD
Sbjct: 1 MIPKILVIDDDNDIRNLISVYLENEGMETIKVADAIKGLEFLKSNDVDLIILDIMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + E + ++ ++ + LSKPF+ +L+ V L
Sbjct: 61 GIQACLKIREEKS-MPIIMLSAKSEDIDKIQGLTSGADDYLSKPFNPLELIARVKSQLRR 119
Query: 121 KN 122
+
Sbjct: 120 SS 121
>gi|168182838|ref|ZP_02617502.1| regulatory protein VanR [Clostridium botulinum Bf]
gi|237794279|ref|YP_002861831.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
gi|182674012|gb|EDT85973.1| regulatory protein VanR [Clostridium botulinum Bf]
gi|229263114|gb|ACQ54147.1| regulatory protein VanR [Clostridium botulinum Ba4 str. 657]
Length = 236
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD D+R L L Y ++ NG A + + E L+L D++MP MDGIE+
Sbjct: 4 ILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNALHENEIHLILLDVMMPIMDGIEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A++ ++ ++F++ + ++KPF+ +L V L
Sbjct: 64 AQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118
>gi|218895625|ref|YP_002444036.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|218544951|gb|ACK97345.1| DNA-binding response regulator [Bacillus cereus G9842]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MP MDG E
Sbjct: 2 RLLVVEDNTSLLESIVQILCDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|126697938|ref|YP_001086835.1| two-component system response regulator [Clostridium difficile 630]
gi|115249375|emb|CAJ67190.1| Two-component response regulator, Tn916-like,CTn1-Orf13
[Clostridium difficile]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD D+ L + L +EV+ C++G + D +++ + L++ DI++P M+G +
Sbjct: 3 KILLIDDDKDLCNLLERELKNENFEVIVCHDGQTGLDTFKKQNYQLIILDIMLPAMNGYD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L+ ++ V+ +T + L+KPF + + V V L+
Sbjct: 63 VLTEIRKLN-NVPVLMLTAKDSEIDKVSGLRLGADDYLTKPFLMAEFVARVQSLIRR 118
>gi|91214972|ref|ZP_01251944.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
gi|91186577|gb|EAS72948.1| response regulator DrrA [Psychroflexus torquis ATCC 700755]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + IL+ +DD D+ L L GY+V++ +G A K +++ L++ D++MP
Sbjct: 1 MKKSDITILVVDDDPDILEILSYNLNAEGYKVITAEDGVQAVKKAKKKKPHLVILDVMMP 60
Query: 58 EMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + E + + F+T ++KP + L+++V
Sbjct: 61 EMDGIEACEQIRETKGLENTVITFLTARGEDYSQVAGFDAGADDYITKPVKPKVLMSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|331091201|ref|ZP_08340042.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404648|gb|EGG84187.1| hypothetical protein HMPREF9477_00685 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K IL+ +D+ + L L GY V + N DKV ++L DI M
Sbjct: 1 MKEKYKILIVDDEQSILDMLKLQLEFEGYAVFTAGNAKETLDKV-SYGPDIILLDINMAG 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G++L + ++F+T + + ++KPF + +L+ ++ L
Sbjct: 60 MNGLDLCASIRD-FISCPIIFLTARVSEQDKINGLMAGGDDYITKPFSVNELLARISAHL 118
Query: 119 TIK 121
+
Sbjct: 119 RRE 121
>gi|322421165|ref|YP_004200388.1| Fis family two component sigma54 specific transcriptional regulator
[Geobacter sp. M18]
gi|320127552|gb|ADW15112.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 468
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ +R L + L Y V + NG +A + ++++ F L++TD+ MP M+
Sbjct: 1 MN--ILVVDDESVIREGLSRILEGDTYTVDAAKNGHAAIELLQQKQFDLIITDLKMPGMN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ L PD V+ ITGFA V ++ + KPF ++ +V L
Sbjct: 59 GFEVLNAVKILQPDTPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVQLALEQ 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|302874388|ref|YP_003843021.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307691010|ref|ZP_07633456.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302577245|gb|ADL51257.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 234
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+AEDD D+ L L ++V+S NG A + V L + DI+MP+++
Sbjct: 1 MNYKILIAEDDKDIIDLLKLYLENEKFQVLSAINGEEALEIVENNEIHLAILDIMMPKLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ E+ ++ ++ ++ + L+KPF+ +++ V +
Sbjct: 61 GFELTKKIREI-SNMPILILSAKNLDSDKILGLDLGADDYLTKPFNPLEIIARVKSSIRR 119
>gi|240146754|ref|ZP_04745355.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|257201091|gb|EEU99375.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|291535944|emb|CBL09056.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
gi|291538436|emb|CBL11547.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 234
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +DD ++ R + L K GY+V+ +G A + + E+ L++ D++MP++D
Sbjct: 1 MSECILVVDDDREIVRAIAILLEKEGYQVLKAYDGMQALELIAEQKVHLVIMDVMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + E ++ ++ ++ + + ++KP++ ++L V L
Sbjct: 61 GLSAVLKIRER-KNIPIIVLSAKSEDTDKVLGLSMGADDYVAKPYNPQELAARVKSHLRR 119
>gi|170757618|ref|YP_001779916.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
gi|169122830|gb|ACA46666.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V NG A + + EE L++ DI+MP +DG+++
Sbjct: 4 VLIVDDEAEIIELMEVYLLNDGYKVFKATNGLDALNIINEEKIHLVILDIMMPGIDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ ++ + + KPF +L+ V +
Sbjct: 64 CMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118
>gi|159487203|ref|XP_001701623.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
gi|158280842|gb|EDP06598.1| chlamyopsin-5 sensory rhodopsin [Chlamydomonas reinhardtii]
Length = 1441
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
++L +DD + + L GYE++ +G A + EE ++L D++MP M G
Sbjct: 721 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 780
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R+ E+ P + V+ I+ + + A + + KPF ++++ + L
Sbjct: 781 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 840
Query: 120 IKN 122
++
Sbjct: 841 FRD 843
>gi|198274045|ref|ZP_03206577.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
gi|198273123|gb|EDY97392.1| hypothetical protein BACPLE_00182 [Bacteroides plebeius DSM 17135]
Length = 1367
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+R ++ + YEV + NG E ++++DI+MP M+GI +
Sbjct: 1098 ILVVEDNADIRDYIADSFTDL-YEVKTAANGKEGLQIATECIPDIVVSDIMMPVMNGIMM 1156
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + V+ +T ++ + L+KPF L + ++ LLT +
Sbjct: 1157 CQKLKADMRTSHIPVILLTAKDSITDKEEGYQAGADSYLTKPFSASLLQSRISNLLTQR 1215
>gi|254438411|ref|ZP_05051905.1| phosphate regulon transcriptional regulatory protein PhoB
[Octadecabacter antarcticus 307]
gi|198253857|gb|EDY78171.1| phosphate regulon transcriptional regulatory protein PhoB
[Octadecabacter antarcticus 307]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q +L+ ED+ R L L GY V +G V E+ +++ D ++P +
Sbjct: 1 MTQPHVLVIEDEPAQREVLSYNLKAEGYRVTVAQDGEQGLLMVEEDAPDVIVLDWMLPHV 60
Query: 60 DGIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ R+ + ++ ++ + + KP+ + +L+ V
Sbjct: 61 SGIEVCRQLKSRSNTRAIPIIMLSARSEELDKVRGLETGADDYVVKPYAVAELMARVRTQ 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|170288334|ref|YP_001738572.1| two component transcriptional regulator [Thermotoga sp. RQ2]
gi|170175837|gb|ACB08889.1| two component transcriptional regulator, winged helix family
[Thermotoga sp. RQ2]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ + +AL K + V C +G EPF +++ DI++ DG E
Sbjct: 2 RVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + E + V+ +T + V L KPF LR+L+ V L+ K+
Sbjct: 62 ILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 120
>gi|119513098|ref|ZP_01632151.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
gi|119462232|gb|EAW43216.1| two-component hybrid sensor and regulator [Nodularia spumigena
CCY9414]
Length = 378
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GYE+ +G +A ++ + P L+L D++MP +DG E
Sbjct: 11 RILAVDDTRDNLILVQTILESEGYEIDLVADGLTALQQIEKSPPDLILLDVMMPGIDGYE 70
Query: 64 LARRATE----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ RR + + ++ IT F + + + KPF +L+ V LL
Sbjct: 71 VTRRIRKNPQFNASYIPILLITAFHQ-SSVVEGLDAGADDFIRKPFDTDELLARVRSLLR 129
Query: 120 IKN 122
+K+
Sbjct: 130 LKH 132
>gi|22299453|ref|NP_682700.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22295636|dbj|BAC09462.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + + ++L Y V + + D + F LL+ D+ +P MDG+
Sbjct: 2 KVLVIEDDRTIAGLVAESLAHQQYIVEIAYDAETGLDYLEATAFDLLILDLGLPGMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + L ++ +T + + KPF L +L+ V LL K
Sbjct: 62 FCQTIRQRGHSLPILILTARDTSSDKVMGLDAGADDYMVKPFDLPELLARVRALLRRK 119
>gi|310827155|ref|YP_003959512.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
gi|308738889|gb|ADO36549.1| hypothetical protein ELI_1563 [Eubacterium limosum KIST612]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K +LL ED+ +R F+ L Y VV +G A + L+L D+ +P+
Sbjct: 1 MSHKALVLLVEDEKGIRNFISTVLDVNNYRVVEARDGKEALELFTSRCPDLILLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDGIE+ + + ++ ++ ++ ++KPF +L+ + +
Sbjct: 61 MDGIEVLKTIRG-WSGIPIIVVSARGHEREKVEALDLGADDYITKPFGTSELLARIRTAM 119
Query: 119 TIK 121
+
Sbjct: 120 RHQ 122
>gi|295108122|emb|CBL22075.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSVSKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|238920098|ref|YP_002933613.1| acetoacetate metabolism regulatory protein AtoC [Edwardsiella
ictaluri 93-146]
gi|238869668|gb|ACR69379.1| acetoacetate metabolism regulatory protein AtoC, putative
[Edwardsiella ictaluri 93-146]
Length = 458
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++++RR L A G+E +NG A + P ++L DI MP M GI+
Sbjct: 6 RILIVDDEENVRRMLTTAFALQGHETYDASNGEEALQCFADAPPDVVLMDIRMPTMSGID 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P V+ +T +A VA ++ + KPF L +L + R L ++
Sbjct: 66 ALKIMRTRQPRTPVILMTAYAEVATAVEALRSGAFDYVIKPFDLEELNLLIRRALQLQ 123
>gi|198274925|ref|ZP_03207457.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
gi|198272372|gb|EDY96641.1| hypothetical protein BACPLE_01084 [Bacteroides plebeius DSM 17135]
Length = 1373
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ ED+ DMRR+L + K Y V+ NG E+ L+L+D++MP MDG
Sbjct: 1119 QTVLIIEDNTDMRRYLRDLMKKH-YRVLEAENGEEGVKVAVEQVPDLVLSDVMMPVMDGF 1177
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ +T A + +++ + KPF+ L+ +V LL +
Sbjct: 1178 TCCAELRKRKETAHIPILLLTAKAEDKDSVEASYRGADDYVRKPFNPEVLLAKVAHLLDM 1237
Query: 121 K 121
+
Sbjct: 1238 R 1238
>gi|23098039|ref|NP_691505.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
gi|22776264|dbj|BAC12540.1| two-component response regulator [Oceanobacillus iheyensis HTE831]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L EDD +++ + L K GY+ +N + P + + DI++P MD
Sbjct: 1 MTVHIGLVEDDTNIQNIVSAYLKKEGYQTTILDNAEDGWKLWENNPPDMWILDIMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E ++ D+ ++ I+ L+KPF R+L+ V RL
Sbjct: 61 GYEFCKKIRNE-SDVPIIIISAKDEEIDKILGLELGGDDYLTKPFSPRELIARVKRLFKR 119
>gi|228959427|ref|ZP_04121117.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228800261|gb|EEM47188.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
Length = 236
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLHVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|228985005|ref|ZP_04145173.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228774693|gb|EEM23091.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 247
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL
Sbjct: 21 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 81 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 135
>gi|225159323|ref|ZP_03725621.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
gi|224802077|gb|EEG20351.1| response regulator receiver protein [Opitutaceae bacterium TAV2]
Length = 263
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIV 55
MN+ +IL+ EDDD R L L G+EV + +NG +A + P L++ D +
Sbjct: 1 MNRNRILVVEDDDGTTRSLAAGLAAEGFEVRTASNGGAADASLAAHPSESPADLVILDWM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P +DGI L RR + V+ +T A+ L+KPF +L+ V
Sbjct: 61 LPGIDGITLLRRLRARGQRMPVLLLTARDAIDDRVQGLEAGADDYLAKPFAFAELLARVR 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|89098508|ref|ZP_01171391.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
gi|89086753|gb|EAR65871.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ +DD + + L GYEV NG A + + L++ DI+MPEMDG+
Sbjct: 1 MIVDDDQHITELIEVYLKNEGYEVSKAGNGVEALNSFGKSQPDLIILDIMMPEMDGLSFC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ ++ +SKPF+ +L V LL N
Sbjct: 61 TQVRK-SSQVPILMVSAKVEDMDKIVGLMTGADDYMSKPFNPLELTARVKALLRRAN 116
>gi|313905194|ref|ZP_07838562.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313469947|gb|EFR65281.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 221
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED DM R L L GYEV S +GA A + + + + +++ DI+MP++DG+E
Sbjct: 2 KILLAEDTKDMNRALTAVLEHEGYEVASAFDGAEALEYIDRDSYDVMILDIMMPKVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R A V+ +T A + L+KPF +++L+ + ++
Sbjct: 62 VIREARNRKIVTPVLLLTAKAEIDDKVAGLDAGADDYLTKPFSIKELLARIRAMVRR 118
>gi|291008487|ref|ZP_06566460.1| response regulator, two-component system [Saccharopolyspora
erythraea NRRL 2338]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ +R L + L G +V ++G A F +++ DI++P +
Sbjct: 1 MAARVLVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R D V+ ++ D L KPF LV +V LL
Sbjct: 61 GYRVLERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKPFSFLVLVAQVRALLRR 120
>gi|302875335|ref|YP_003843968.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307688915|ref|ZP_07631361.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302578192|gb|ADL52204.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +D+ ++R + L GY VV NG + + L++ DI+MP+MDG
Sbjct: 3 NGTILVVDDEKEIRELIEIFLKNEGYTVVKATNGVETLEILENTIVDLIILDIMMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE + + ++ ++ ++ + KPF+ +L+ V L
Sbjct: 63 IEACLNIRK-NRNMPIIMLSAKNQDMDKILGLTSGADDYVEKPFNPLELLARVKSQLRR 120
>gi|229101700|ref|ZP_04232417.1| Two-component response regulator [Bacillus cereus Rock3-28]
gi|228681648|gb|EEL35808.1| Two-component response regulator [Bacillus cereus Rock3-28]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V C NGA A D + + L++ DI++P +DG++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPGIDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|134103391|ref|YP_001109052.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
gi|291004390|ref|ZP_06562363.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
gi|133916014|emb|CAM06127.1| two-component response regulator [Saccharopolyspora erythraea NRRL
2338]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ G A ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQEALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTDVCKQLRQR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRR 118
>gi|221066592|ref|ZP_03542697.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
gi|220711615|gb|EED66983.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
Length = 238
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL EDD + L L G EVV C G + + L+ D+++P +DG+
Sbjct: 5 RRILLVEDDAHIADLLSLHLRDEGLEVVHCARGDDGLAHLERGGWDALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTRYTPIIIISARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRR 122
>gi|319787643|ref|YP_004147118.1| PhoB family transcriptional regulator [Pseudoxanthomonas suwonensis
11-1]
gi|317466155|gb|ADV27887.1| two component transcriptional regulator PhoB, winged helix family
[Pseudoxanthomonas suwonensis 11-1]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ +R + AL K YE V + A + + ++L D ++P
Sbjct: 1 MQKQILIVDDEPAIRDMVAFALRKGDYEPVHAGDAREAQAAIADRVPDMILLDWMLPGTS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ELARR L ++ ++ +T + KPF R+L+ + ++
Sbjct: 61 GLELARRWRREALTREVPIIMLTARGEENDRVGGLEAGVDDYVVKPFSSRELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|313678937|ref|YP_004056676.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313151652|gb|ADR35503.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ L +AG+ V ++G + + E LL+ D+++P + G E
Sbjct: 3 RILIVEDDREIAALAAAQLERAGHAVRVVHDGEAGLAEALEGGHDLLVLDVMLPGVSGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R +V+ +T A L+KPF LR+L V LL
Sbjct: 63 IVERLRRRPGYPRVLMLTARAEEVDRVLGLELGADDYLTKPFSLRELEARVRALLRR 119
>gi|253998963|ref|YP_003051026.1| winged helix family two component transcriptional regulator
[Methylovorus sp. SIP3-4]
gi|253985642|gb|ACT50499.1| two component transcriptional regulator, winged helix family
[Methylovorus sp. SIP3-4]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+LL +DD ++ L + L + G++ +G S ++ + + L+L D++MP+M+
Sbjct: 1 MN-KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + V+ +T A + KP R++V V +L
Sbjct: 60 GIDALRAIRAE-KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 118
>gi|229059564|ref|ZP_04196945.1| Two-component response regulator vanR [Bacillus cereus AH603]
gi|228719768|gb|EEL71363.1| Two-component response regulator vanR [Bacillus cereus AH603]
Length = 244
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 18 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNGIQLAILDIMMPQMDGIEL 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 78 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 132
>gi|229165243|ref|ZP_04293033.1| Two-component response regulator [Bacillus cereus AH621]
gi|228618238|gb|EEK75273.1| Two-component response regulator [Bacillus cereus AH621]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELIARIKSQLRR 120
>gi|187777708|ref|ZP_02994181.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
15579]
gi|187774636|gb|EDU38438.1| hypothetical protein CLOSPO_01300 [Clostridium sporogenes ATCC
15579]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++R L L GY V G A + + E +L++ DI+MP+MD
Sbjct: 1 MNNNILVVDDEKEIRDLLEINLINEGYNVFKARCGKEALEILEREEVNLMVLDIMMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ +RA E + ++ ++ + + KPF+ +L + LL
Sbjct: 61 GLEVCKRAREKYS-IPILMLSAKVEDMDRIEGIMTGADDYVCKPFNHLELTVRIRALLRR 119
>gi|320536674|ref|ZP_08036689.1| response regulator receiver domain protein [Treponema phagedenis
F0421]
gi|320146496|gb|EFW38097.1| response regulator receiver domain protein [Treponema phagedenis
F0421]
Length = 456
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ ++R L AL GYEV + ++G D L++TD+ MPE+
Sbjct: 1 MKFSILIIDDEKNIREGLQMALEDEGYEVFTASDGKKGLDIAFSNDIDLVITDLKMPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + P + V+ +TG V ++ L+KP L L V R L
Sbjct: 61 GEEVLRRISSETPGVPVIVLTGHGTVETAVEAMRTGAYDFLTKPLDLDRLSLLVRRALQN 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|227819020|ref|YP_002822991.1| two-component transcriptional regulator [Sinorhizobium fredii
NGR234]
gi|227338019|gb|ACP22238.1| two-component transcriptional regulator [Sinorhizobium fredii
NGR234]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R + A+ +AG V NGA A R L + DI MPEMDG+E
Sbjct: 3 RILVVDDEPHIRDVICFAIERAGMTSVVARNGAEAMMAFRRGNVDLAILDIGMPEMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + L V+F + ++KPF R+L+ V +L N
Sbjct: 63 VCRRIR-TESALPVLFPSARDDEIDRVVGLEIGGDDYVTKPFSPRELIARVKAILKRAN 120
>gi|168205523|ref|ZP_02631528.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170662911|gb|EDT15594.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ +R FL + ++V+ C +G K E + + D+++P M+G E
Sbjct: 2 KILLVEDEESIRGFLRINFQRENFQVIECESGEEGVRKALIEKPDIAILDVMLPGMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E P + ++ +T + KPF+ ++ V L+
Sbjct: 62 VCQKLRESFPRMGIIILTAKGEDMDKIMGLQFGADDYVLKPFNPLEITLRVKALIRR 118
>gi|206967861|ref|ZP_03228817.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|229177114|ref|ZP_04304503.1| Two-component response regulator [Bacillus cereus 172560W]
gi|229188792|ref|ZP_04315827.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|206736781|gb|EDZ53928.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228594693|gb|EEK52477.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228606295|gb|EEK63727.1| Two-component response regulator [Bacillus cereus 172560W]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|152974099|ref|YP_001373616.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152022851|gb|ABS20621.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY ++ +GA + + L++ DI+MP++DGI
Sbjct: 17 ETILVVDDEKEIRDLITIYLKNEGYNILQAGDGAEGLEILENNEVHLVVLDIMMPKIDGI 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +LV V L
Sbjct: 77 HMCMKVREQ-KEMPIIMLSAKTQDMDKILGLTTGADDYVTKPFNPLELVARVKSQLRR 133
>gi|30023294|ref|NP_834925.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|228955506|ref|ZP_04117511.1| DNA-binding response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|229147792|ref|ZP_04276135.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
gi|229193510|ref|ZP_04320457.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
gi|29898855|gb|AAP12126.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|228590042|gb|EEK47914.1| DNA-binding response regulator [Bacillus cereus ATCC 10876]
gi|228635805|gb|EEK92292.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24]
gi|228804298|gb|EEM50912.1| DNA-binding response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|329929102|ref|ZP_08282895.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
gi|328936885|gb|EGG33317.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
Length = 232
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD + + L G++VV +G A ++ E + L+L D+++P++
Sbjct: 1 MASNILLVEDDSSIGEMVESYLTMEGFQVVLAKDGEEALERFAERDYDLVLLDMMLPKIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ ++ E + V+ ++ ++KPF + +L V +
Sbjct: 61 GMDFLKKIREK-SHVPVLIVSAKDGEVDKALGLGFGADDYITKPFSMVELTARVKAAIRR 119
>gi|315651221|ref|ZP_07904251.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
gi|315486517|gb|EFU76869.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + L +G+EV +G +K E + L+L D+++P +DG E
Sbjct: 3 KVLIIEDEVSIAELERDYLEISGFEVDISTDGKEGLEKALSEDYDLVLLDLMLPGLDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ ++ ++KPF +LV V +
Sbjct: 63 ICRRIRA-TKEIPIVMVSAKKNDIDKIRGLGLGADDYMTKPFSPSELVARVKAHINR 118
>gi|260768957|ref|ZP_05877891.1| response regulator [Vibrio furnissii CIP 102972]
gi|260616987|gb|EEX42172.1| response regulator [Vibrio furnissii CIP 102972]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59
N IL+ +DD ++ L + L K+G+ V + ++G A + + L+L D+++P
Sbjct: 3 NTHILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGE 61
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ D ++ ++ +T + ++KPF R L+ + LL
Sbjct: 62 DGFTLCQKIR-RDSNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|170693022|ref|ZP_02884183.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170142020|gb|EDT10187.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R + L K G V NG + + L++ D++MP DG+
Sbjct: 6 HVLIVDDDRGIRELIAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L KPF +R+L+ + +L
Sbjct: 66 LCRELRAGKFRTVPVLMLTARNEEADRILGLEMGADDYLPKPFAVRELLARIRAVLRR 123
>gi|153871894|ref|ZP_02000947.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152071639|gb|EDN69052.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 407
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + ++ L +AG +VV NG + + ++L D++MP +DG E
Sbjct: 19 TILIIEDNPNNLGVIVDYLEEAGLKVVVARNGEMGLKRAQFAQPDIILLDVMMPGIDGFE 78
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ V+F+T ++KP +++ V L I+
Sbjct: 79 TCRRLKADAKTQEIPVIFMTALDDPEDKLKGFGVGGVDYITKPIQHEEVLARVTTHLRIR 138
>gi|325123756|gb|ADY83279.1| osmolarity response regulator [Acinetobacter calcoaceticus PHEA-2]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 54/114 (47%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+DD +R L + L G+ V + ++ + ++ E FSL++ D ++P DG+ + RR
Sbjct: 2 VDDDVRLRTLLQRFLEDKGFVVKTAHDASQMDRLLQRELFSLIVLDFMLPVEDGLSICRR 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D ++ +T + + L KPF+ +L+ + +L +
Sbjct: 62 LRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQ 115
>gi|313497378|gb|ADR58744.1| GltR_2 [Pseudomonas putida BIRD-1]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD ++R L L ++G++V + +G + P L++ D+++P+ DG
Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125
>gi|218901766|ref|YP_002449600.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|218539476|gb|ACK91874.1| DNA-binding response regulator [Bacillus cereus AH820]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDKKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|148243511|ref|YP_001228668.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147851821|emb|CAK29315.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ ++ L L G+ + C +GA A ++RE ++ L D MP + G+++
Sbjct: 8 ILIADDEANILMLLEMELQAEGFSTIGCGDGAKALAQIRESAPAIALLDWNMPIITGLDV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ IT + + +SKPF++R+++ V LL
Sbjct: 68 CRRLRDTGNRIPVIMITARDEMDDRVAALEAGADDFISKPFNIREVLARVKALLRR 123
>gi|148543300|ref|YP_001270670.1| two component transcriptional regulator [Lactobacillus reuteri DSM
20016]
gi|184152710|ref|YP_001841051.1| two-component system response regulator [Lactobacillus reuteri JCM
1112]
gi|227364368|ref|ZP_03848461.1| two component response regulator [Lactobacillus reuteri MM2-3]
gi|325683567|ref|ZP_08163083.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
gi|148530334|gb|ABQ82333.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri DSM 20016]
gi|183224054|dbj|BAG24571.1| two-component system response regulator [Lactobacillus reuteri JCM
1112]
gi|227070681|gb|EEI09011.1| two component response regulator [Lactobacillus reuteri MM2-3]
gi|324977917|gb|EGC14868.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
Length = 221
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ + L A+ +GY+V NNG A ++ +E + +++ DI+MP G+E
Sbjct: 2 RILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T LSKPF L++L+ +
Sbjct: 62 ALKEIRATGNRTYIMMLTAMGEEDDKVTGLDAGADDYLSKPFSLKELLARLR 113
>gi|304317311|ref|YP_003852456.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778813|gb|ADL69372.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ L +L + G V++ NG +K +E L++ DI+MP++D
Sbjct: 1 MS-KILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAKE-MPDLIVLDIMMPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++F++ + A + KPF L++L+ ++ L
Sbjct: 59 GYEVCRKIRDTVI-CPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|315498662|ref|YP_004087466.1| two component transcriptional regulator, winged helix family
[Asticcacaulis excentricus CB 48]
gi|315416674|gb|ADU13315.1| two component transcriptional regulator, winged helix family
[Asticcacaulis excentricus CB 48]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R + L + G+EV + +G ++ L++ D +MP DG+
Sbjct: 13 HILVVDDDFDLRELISGFLSQNGFEVHTAASGREMDKVLQRGDIGLVVLDYMMPGEDGLS 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ ++ L+KPFH R+L+ + ++
Sbjct: 73 ICKRLNQKG-GPPVIMLSAKGEEIDRIVGLELGADDYLAKPFHPRELLARIRAVMRR 128
>gi|228991458|ref|ZP_04151410.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
gi|228768260|gb|EEM16871.1| Sensor histidine kinase [Bacillus pseudomycoides DSM 12442]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD ++ L L GY + +G A + L++ DI+MP+ +
Sbjct: 2 MERNILIIDDDKEIVELLAVYLRNEGYSIYKAYDGDEALHMLSLYQIDLMILDIMMPKRN 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ E + + ++ ++ A + KPF+ +L+ V LL
Sbjct: 62 GLEVCQQVREEN-TVPILMLSAKAEDMDKILGLMTGADDYMIKPFNPLELIARVKALLRR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|229153423|ref|ZP_04281601.1| DNA-binding response regulator [Bacillus cereus m1550]
gi|228630027|gb|EEK86678.1| DNA-binding response regulator [Bacillus cereus m1550]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 118
>gi|78065919|ref|YP_368688.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77966664|gb|ABB08044.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVVEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|26987748|ref|NP_743173.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|24982439|gb|AAN66637.1|AE016291_6 DNA-binding response regulator GltR [Pseudomonas putida KT2440]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD ++R L L ++G++V + +G + P L++ D+++P+ DG
Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125
>gi|89893889|ref|YP_517376.1| hypothetical protein DSY1143 [Desulfitobacterium hafniense Y51]
gi|89333337|dbj|BAE82932.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
NQ IL+ ED++ + RF+ LG GY V +G + + F L+L D+++P+++G
Sbjct: 6 NQSILIIEDEEKIARFVELELGYEGYNVTKAFDGRTGLELAETGRFDLILLDVMLPKLNG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR + ++ +T +V ++KPF + +L+ + L
Sbjct: 66 TEVLRRIR-RTSAVPIIMLTARDSVMDKVSGLDSGANDYITKPFAIEELLARIRNALR 122
>gi|332662395|ref|YP_004445183.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
hydrossis DSM 1100]
gi|332331209|gb|AEE48310.1| integral membrane sensor hybrid histidine kinase [Haliscomenobacter
hydrossis DSM 1100]
Length = 1361
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+R++L + L Y+V + NG A + + L+L+DI+MP MDG +
Sbjct: 1106 RILLIEDNHDLRQYLTQILAGK-YQVRTLGNGREAQLNLEQWMPDLILSDIMMPLMDGFQ 1164
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E + ++ +T A + + L KPF +L+ + LL +
Sbjct: 1165 FLEWLKSSEKHASIPIIMLTARADLGDKLRALRTGVDDYLVKPFVEAELLARIQNLLQRQ 1224
>gi|319653627|ref|ZP_08007726.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
gi|317394826|gb|EFV75565.1| hypothetical protein HMPREF1013_04343 [Bacillus sp. 2_A_57_CT2]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ ++ L YE G +++++ + L+L D+++P+MDG
Sbjct: 2 ERILIIEDELNIAELERDYLELNHYEADIAATGQEGLERLKQSSYRLVLLDLMLPDMDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ E+ ++ ++ +T ++KPF+ L+ V +
Sbjct: 62 EICRQIREI-SEIPIIMVTAKNEEIDMIRGLGRGADDYIAKPFNPNQLIARVKAHIAR 118
>gi|271969710|ref|YP_003343906.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270512885|gb|ACZ91163.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD +R L AL + G+ V S +G A D +R +++ D+++P +DG+E+
Sbjct: 4 ILLVEDDPSVRTGLELALARQGHSVTSYASGEEALDHIRSRRPEIVILDVMLPGIDGVEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++D L V+ +T + KP R L + +L
Sbjct: 64 CRRIRKMD-QLPVILLTARGDDLDVVVGLEAGADDYVVKPVEPRVLDARIRAVLRR 118
>gi|253991781|ref|YP_003043137.1| DNA-binding transcriptional regulator CpxR [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|211638556|emb|CAR67177.1| transcriptional two-component response regulatory protein cpxr
[Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783231|emb|CAQ86396.1| transcriptional two-component response regulatory protein cpxr
[Photorhabdus asymbiotica]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G VV ++G A + +E LLL DI+MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGLNVVIAHDGEQALKLL-DESIDLLLLDIMMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ATLKELR-LHHQTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|126659073|ref|ZP_01730213.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
gi|172035214|ref|YP_001801715.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|126619601|gb|EAZ90330.1| Two component Transcriptional regulator, Winged helix family
protein [Cyanothece sp. CCY0110]
gi|171696668|gb|ACB49649.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDDD +R + L AGY++ +G + L++ D+++P++DG
Sbjct: 3 RILVIEDDDAIRDLIATNLEMAGYDIKQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ V+ ++ + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDDRTADIPVLMLSALGQTQDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121
>gi|159899244|ref|YP_001545491.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159892283|gb|ABX05363.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ + L L Y V +G +A + VR L++ D+++P MDG E
Sbjct: 6 ILVVDDEPDVAQLLSLQLTMEKYRVQIAYDGPTAIEYVRSLTPDLIILDVMLPAMDGYET 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E ++ ++ +T ++KP+ L+ V LL
Sbjct: 66 CRRIRE-FSNVPILMLTANIQDQQIVSGLDSGADDYVTKPYSPSQLLARVRALLRR 120
>gi|94264346|ref|ZP_01288138.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455240|gb|EAT05453.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 257
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L +DD D+ + L L GY + + A A +++E P L++ D+++P+ DG+E
Sbjct: 33 TLLAIDDDPDILKVLKANLELHGYTLECATSLAEARRRLQETPPDLVILDLMLPDGDGLE 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L P L V+ +T V+ + KPF +L+ + L
Sbjct: 93 FCCQLKSLHPQLPVIMLTARDKVSDKVVGLEIGADDYVVKPFETSELLARIKARLR 148
>gi|29350071|ref|NP_813574.1| two-component system sensor histidine kinase/response [Bacteroides
thetaiotaomicron VPI-5482]
gi|298384392|ref|ZP_06993952.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_14]
gi|29341983|gb|AAO79768.1| two-component system sensor histidine kinase/response [Bacteroides
thetaiotaomicron VPI-5482]
gi|298262671|gb|EFI05535.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_14]
Length = 1353
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++RR+L L + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRRYLSNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|323171898|gb|EFZ57542.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
LT-68]
Length = 461
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|311280253|ref|YP_003942484.1| two component transcriptional regulator, winged helix family
[Enterobacter cloacae SCF1]
gi|308749448|gb|ADO49200.1| two component transcriptional regulator, winged helix family
[Enterobacter cloacae SCF1]
Length = 240
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNAKKILLVEDDRDIATLLRLNLQDEGYKIVHEADGARALALLDKQVWDAVILDLMLPH 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR ++ L V+ I+ + L KPF + +L+ V L
Sbjct: 61 VDGLEICRRIRQMARYLPVIIISARTSETHRVLGLEMGADDYLPKPFSVLELIARVKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|229082475|ref|ZP_04214938.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
gi|228700907|gb|EEL53430.1| DNA-binding response regulator [Bacillus cereus Rock4-2]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ + +
Sbjct: 62 LLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRIKNMARR 118
>gi|206564292|ref|YP_002235055.1| two-component regulatory system response regulator protein
[Burkholderia cenocepacia J2315]
gi|198040332|emb|CAR56317.1| two-component regulatory system, response regulator protein
[Burkholderia cenocepacia J2315]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKLDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNALDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|217970504|ref|YP_002355738.1| two component heavy metal response transcriptional regulator,
winged helix family [Thauera sp. MZ1T]
gi|217980166|ref|YP_002364216.1| heavy metal response regulator [Thauera sp. MZ1T]
gi|217507831|gb|ACK54842.1| two component heavy metal response transcriptional regulator,
winged helix family [Thauera sp. MZ1T]
gi|217508337|gb|ACK55122.1| heavy metal response regulator [Thauera sp. MZ1T]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + +L KAL + Y V ++G E + L+L D+++P +DG
Sbjct: 2 KILVVEDELKLAEYLRKALTENSYVVDVAHSGTEGRYLAIEGHYDLVLLDVMLPGLDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D + V+ +T V L KPF L +L+ V LL
Sbjct: 62 VLRELR-RDKHVPVLMLTARDKVEDRVKGLQAGADDYLVKPFALSELLARVQALLRR 117
>gi|302036150|ref|YP_003796472.1| transcriptional regulatory protein pilR [Candidatus Nitrospira
defluvii]
gi|300604214|emb|CBK40546.1| Transcriptional regulatory protein pilR [Candidatus Nitrospira
defluvii]
Length = 459
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 63/119 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R L L +AGY V ++G A +V++E F L++TD+ MP + G+
Sbjct: 2 EKILVVDDEQGLRDVLSIMLKRAGYVVTVASDGDEAIAQVQKEIFDLVITDLKMPRVGGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + PD V+ IT FA+ ++ L+KPF + ++ + + +
Sbjct: 62 EVLKAVKAASPDTVVLMITAFASADSAVEAMKHGAYDYLTKPFQVDEVQLIIRNAIERR 120
>gi|289705109|ref|ZP_06501513.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
gi|289558137|gb|EFD51424.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +DD+ + + L G+E +G SA E L+L D+++P +DG
Sbjct: 3 KAKILVVDDDEALAEMIGIVLRNDGFEPAFAADGTSALPAFHRERPDLVLLDLMLPGIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R + D+ ++ +T + A + KPF +LV V L
Sbjct: 63 IEVCRLIRDE-SDVPIVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 119
>gi|266619280|ref|ZP_06112215.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
13479]
gi|288869197|gb|EFD01496.1| transcriptional regulatory protein CutR [Clostridium hathewayi DSM
13479]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++DMR L L K GY V + +GA A ++ + L++ D+ +P +DG+E
Sbjct: 2 RLLIVEDEEDMREALCYGLRKRGYAVDAAGDGADAVEQCGINEYDLVVLDLNLPGLDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ KV+ ++ + + + L+KPFH +L + LL
Sbjct: 62 VLKHIRSMEKPAKVLILSARSELTDKIRGLDSGASDYLTKPFHFEELEARIRMLLRR 118
>gi|170780989|ref|YP_001709321.1| putative two component response regulator [Clavibacter
michiganensis subsp. sepedonicus]
gi|169155557|emb|CAQ00673.1| putative two component response regulator [Clavibacter
michiganensis subsp. sepedonicus]
Length = 269
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ + NG A RE ++ DI++P++DG++
Sbjct: 44 RVLVVDDEASLTDLLQMALRYEGWQIRTAENGHQALAAAREFKPDAVVLDIMLPDLDGLQ 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ V+F+T ++ ++KPF L ++V + L+
Sbjct: 104 VLSRLRADAEDIPVLFLTAKDSLDDRLAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160
>gi|160913591|ref|ZP_02076281.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
gi|158434052|gb|EDP12341.1| hypothetical protein EUBDOL_00067 [Eubacterium dolichum DSM 3991]
Length = 250
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++ + L GYE+ + A + L L DI+MP+++
Sbjct: 22 MQTKILVLDDEKEIADLVTLYLRNEGYEIYEFYDSEDAVAFMEHNTIDLALLDIMMPKIN 81
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E V+ +T + ++KPF+ ++V V L
Sbjct: 82 GFEICKMIREKY-TFPVIMLTAKIEDMDKIQGLSLGADDYITKPFNPLEMVARVKAQLRR 140
>gi|332880410|ref|ZP_08448084.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332681398|gb|EGJ54321.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 1299
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++D R +L + L + + V ++G ++ +++TD++MP+MDGIE
Sbjct: 1053 KILLVEDNNDFRHYLQEELRRH-FVVFEASDGEEGEAVALQQKPDIIITDLMMPKMDGIE 1111
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R + ++ +T A++ ++KPF L ++ LL +
Sbjct: 1112 LCKRIKHNIDVSHIPIILLTASASMENEERGYKEGADAYMTKPFKWEILTARIHNLLAQR 1171
>gi|229135507|ref|ZP_04264293.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
gi|228647972|gb|EEL04021.1| hypothetical protein bcere0014_44010 [Bacillus cereus BDRD-ST196]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|49478722|ref|YP_038715.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|52140835|ref|YP_085995.1| DNA-binding response regulator [Bacillus cereus E33L]
gi|49330278|gb|AAT60924.1| DNA-binding response regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974304|gb|AAU15854.1| DNA-binding response regulator [Bacillus cereus E33L]
Length = 233
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 66 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122
>gi|317470763|ref|ZP_07930147.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|316901752|gb|EFV23682.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 245
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q KIL+ +DD ++ + K L GY+VV NG A D + E+ LL+ DI+MP M
Sbjct: 11 MAQPKILVVDDDKEIVGAIKKRLELEGYDVVPAYNGLEALDVLVEQDIQLLIIDIMMPGM 70
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + E ++ ++ ++ + + +SKPF +L+ V L
Sbjct: 71 DGLSATMKIRE-SKNIPIIILSAKTEESDKILGLSMGADDYVSKPFRPDELIARVKSQLR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|295132377|ref|YP_003583053.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
gi|294980392|gb|ADF50857.1| two-component system response regulator [Zunongwangia profunda
SM-A87]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +ILL +D+ D+ + L GY+V++ +NGA A +++ L++ D++MP
Sbjct: 1 MKKKDIRILLVDDEPDILEIVGYNLSAEGYQVITADNGAEAVKVAKKKSPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDGIE + ++ D + F+T ++KP + LV++V
Sbjct: 61 GMDGIEACEQMRKIPELEDTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|284929132|ref|YP_003421654.1| winged helix family two component transcriptional regulator
[cyanobacterium UCYN-A]
gi|284809591|gb|ADB95296.1| two component transcriptional regulator, winged helix family
[cyanobacterium UCYN-A]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDDD +R + L AGY++ +G + L++ D+++P++DG
Sbjct: 3 RILVIEDDDAIRDLISTNLEMAGYDINQAPDGIKGQALAVQLQPDLIMLDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ ++ + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDERTADIPVLMLSALGQTKDKVEGFNAGADDYLTKPFELAEMLARVRALLRR 121
>gi|227431100|ref|ZP_03913158.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|227353140|gb|EEJ43308.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYE + N+G S D E + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E+ ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLREVKK-TPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|170019466|ref|YP_001724420.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
ATCC 8739]
gi|169754394|gb|ACA77093.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Escherichia coli ATCC 8739]
Length = 461
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|89889436|ref|ZP_01200947.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
gi|89517709|gb|EAS20365.1| transcriptional regulatory protein [Flavobacteria bacterium BBFL7]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ D+ + L GY+V + NG K +++ L++ D++MP MDGIE
Sbjct: 7 KILLVDDEPDILEIVSYNLKNEGYQVFTAENGKEGVQKAKKKKPDLIILDVMMPVMDGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + F+T ++KP R LV++V LL
Sbjct: 67 ACEQIRKIPELDQTIITFLTARGEDYSMIAGFDAGADDYIAKPIKPRVLVSKVKSLLRR 125
>gi|327481402|gb|AEA84712.1| transcriptional activator CopR [Pseudomonas stutzeri DSM 4166]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V +G A V P+ LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGTYLQQGLSEAGFTVDRVTSGTDALQHVLSVPYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+F+T V L KPF +L+ V LL N
Sbjct: 62 VLRLVRASGNEVPVLFLTARDRVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120
>gi|315648817|ref|ZP_07901912.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315275785|gb|EFU39137.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 239
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 53/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ + R L L + G++V +G + Y+K + L+L D+++P M+G ++
Sbjct: 2 LVIEDEPTLSRLLSYNLTQEGFQVEVEEHGTAGYEKAANHEYDLILLDVMLPGMNGFQIL 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ +T A ++KPF + +L+ V+ ++
Sbjct: 62 EKLRGSGITTPIIILTAKNAEEEVVQGLKMGADDYITKPFGVSELLARVSAVMRR 116
>gi|309777924|ref|ZP_07672867.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308914322|gb|EFP60119.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ D+ + + L K GY V +C +G A + + ++ DI+MP+++G E
Sbjct: 2 RLLLAEDERDLNELVCRKLKKEGYSVDACYDGQEALEYAAVTEYDGIILDIMMPKVNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R V+F+T A+ L KPF +L + ++ +
Sbjct: 62 VLKRLRAEKNMTPVLFLTARDAIEDRVLGLDSGANDYLIKPFSFAELTARIRTMIRL 118
>gi|221633255|ref|YP_002522480.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
gi|221155928|gb|ACM05055.1| two-component response regulator [Thermomicrobium roseum DSM 5159]
Length = 224
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD + + L L + G+ VV+ +G +A + +E L++ D+++P G +
Sbjct: 3 HILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHGRD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R L ++ +T + ++KPF +L+ V LL
Sbjct: 63 VCRALR-LRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRR 118
>gi|254422525|ref|ZP_05036243.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196190014|gb|EDX84978.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 245
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGY+ N+G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIVELVSINLEMAGYDTTQANDGIKGQALAVQLVPDLIMLDLMLPKVDGFT 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ V+ +T D L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDDRTADIPVLMLTALGETQNKVDGFNAGADDYLTKPFELEEMLARVRALLRR 121
>gi|254413625|ref|ZP_05027395.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
7420]
gi|196179732|gb|EDX74726.1| Stage II sporulation protein E [Microcoleus chthonoplastes PCC
7420]
Length = 379
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD ++ L + L GY+V +NG + V++ +L++ D +MP M+
Sbjct: 1 MTQ-ILIIDDDPAIQILLKRTLHNQGYDVTIASNGEEGLELVQQLRPALVICDWIMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R+ + +T +V + KP + +L V L
Sbjct: 60 GLEVCRQIKATPALSTTMFILLTSLGSVGDRVKGLDAGADDFICKPIEIAELQARVRSGL 119
Query: 119 TI 120
+
Sbjct: 120 RL 121
>gi|56479148|ref|YP_160737.1| osmolarity response regulator [Aromatoleum aromaticum EbN1]
gi|56315191|emb|CAI09836.1| Transcriptional regulatory protein similar to OmpR [Aromatoleum
aromaticum EbN1]
Length = 248
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 1 MNQKI----LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN KI LL +DD +R L + L + G+ V + + S + E F L++ D+++
Sbjct: 4 MNAKIRYRVLLVDDDARLRDLLSRYLQEQGFTVKAVVDAPSMDRALHREHFDLMVLDLML 63
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DG+ + RR + + ++ +T L+KPF+ R+LV ++
Sbjct: 64 PGEDGLTICRRLRADENAMPIIMLTAKGDDVDRIIGLEMGADDYLAKPFNPRELVARIHA 123
Query: 117 LLTIK 121
++ +
Sbjct: 124 VMRRQ 128
>gi|325273090|ref|ZP_08139394.1| histidine kinase [Pseudomonas sp. TJI-51]
gi|324101779|gb|EGB99321.1| histidine kinase [Pseudomonas sp. TJI-51]
Length = 305
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V GA A + +PF L+L D MP MDG E
Sbjct: 185 RILLVEDNPVNQLVAKGMLAKLGCQVELATQGAEALAALERQPFDLVLMDCNMPVMDGYE 244
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P L ++ +T A A L+KPF +L+ V+
Sbjct: 245 ASRRIRQSGRWPHLPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHW 300
>gi|332654980|ref|ZP_08420722.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
gi|332516323|gb|EGJ45931.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
Length = 230
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQSEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|229032321|ref|ZP_04188294.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
gi|228729101|gb|EEL80104.1| hypothetical protein bcere0028_43630 [Bacillus cereus AH1271]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGEVGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|228937822|ref|ZP_04100452.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228951077|ref|ZP_04113195.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228970703|ref|ZP_04131345.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228977280|ref|ZP_04137676.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|229068272|ref|ZP_04201575.1| Two-component response regulator [Bacillus cereus F65185]
gi|229077897|ref|ZP_04210508.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|229148925|ref|ZP_04277170.1| Two-component response regulator [Bacillus cereus m1550]
gi|228634465|gb|EEK91049.1| Two-component response regulator [Bacillus cereus m1550]
gi|228705415|gb|EEL57790.1| Two-component response regulator [Bacillus cereus Rock4-2]
gi|228714733|gb|EEL66605.1| Two-component response regulator [Bacillus cereus F65185]
gi|228782419|gb|EEM30601.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228789005|gb|EEM36942.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228808594|gb|EEM55095.1| Two-component response regulator [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228821857|gb|EEM67855.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|326938303|gb|AEA14199.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 223
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|225849099|ref|YP_002729263.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
gi|225644594|gb|ACN99644.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Sulfurihydrogenibium azorense Az-Fu1]
Length = 228
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + EDD+D+ L K G+EV S NG A++ ++E+ ++ D++MPE+DG+E
Sbjct: 4 IYVIEDDEDINELLTYNFKKEGFEVKSFPNGKVAFEHIKEDKPDAVVLDLMMPEIDGLEF 63
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ +T + ++KPF R+L+ V ++
Sbjct: 64 CKLVRSDKEISHTPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKAVIRR 121
>gi|115526645|ref|YP_783556.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115520592|gb|ABJ08576.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 258
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + R + K L G V + +G + + L++ D+++P+ DG+ L
Sbjct: 17 ILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLSL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ +T ++KPF+ R+L+ +N +L +
Sbjct: 77 CRKVRAR-SQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQ 132
>gi|323188052|gb|EFZ73347.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
RN587/1]
Length = 461
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|294620680|ref|ZP_06699887.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
gi|291599660|gb|EFF30670.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Enterococcus faecium U0317]
Length = 218
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L++ L K GY V S G A D + ++ F L L DI++PE+DG E
Sbjct: 2 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E DL V+F+T ++ ++KPF L +L+ V +L
Sbjct: 62 VFAYMREY--DLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 116
>gi|227486683|ref|ZP_03916999.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
51172]
gi|227235395|gb|EEI85410.1| DNA-binding response regulator [Anaerococcus lactolyticus ATCC
51172]
Length = 237
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ ED++ + + L K GYEV +G K E L++ D+++P+M
Sbjct: 1 MEKIKILIIEDEESINNIVKSYLVKEGYEVYQAFDGEEGLRKFLAEDIDLVILDLMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ + ++ V+ ++ ++KPF R+L+ + +L
Sbjct: 61 LGEDVMKEIRNR-SEVPVIMLSAKVEENDKVTGLRLGADDYITKPFSARELIERIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|169837195|ref|ZP_02870383.1| two-component response regulator [candidate division TM7
single-cell isolate TM7a]
Length = 205
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ ++K L Y V +C NG A + + + ++++DI++P +DG E
Sbjct: 2 RILVVEDEQNLNDIIVKRLILEKYGVDTCFNGNDALEYIFSTEYDVIVSDIMLPGIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E V+ +T + L KPF +L+ + LL
Sbjct: 62 ILKRIREKGIKTPVLLLTALDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRR 118
>gi|118470690|ref|YP_884659.1| two component response transcriptional regulatory protein prra
[Mycobacterium smegmatis str. MC2 155]
gi|118171977|gb|ABK72873.1| two component response transcriptional regulatory protein prra
[Mycobacterium smegmatis str. MC2 155]
Length = 246
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +L+ +DD D+R + + L +G++V +G A + E L+ D+ MPE+DG
Sbjct: 20 NRTVLMVDDDPDVRTSVARGLRHSGFDVRVAASGKEALRLLSTESHDALVLDVQMPELDG 79
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + L D+ + ++ V L+KPF L +LV ++ LL
Sbjct: 80 VAVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRR 138
>gi|86158331|ref|YP_465116.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85774842|gb|ABC81679.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 473
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++RR L L + GYEV + +G A + P +++TD+VMP + G+E
Sbjct: 3 HVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPVHVVVTDLVMPRVGGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-----L 118
L RR ++ PD+ V+ IT +V + ++KPF +L + + L
Sbjct: 63 LLRRVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQDELKKVIAKAARAHDL 122
Query: 119 TIKN 122
+N
Sbjct: 123 ERQN 126
>gi|47059697|gb|AAQ16277.2| chlamyopsin-5 [Chlamydomonas reinhardtii]
Length = 1425
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
++L +DD + + L GYE++ +G A + EE ++L D++MP M G
Sbjct: 705 RVLSVDDDPVNQLVIQNLLAPVGYEILQAMDGQEALKVLTEEERLPDVILLDVMMPGMSG 764
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R+ E+ P + V+ I+ + + A + + KPF ++++ + L
Sbjct: 765 YEVCRKLREMYPLSCIPVIMISAKSKEEHIVEGLAAGSNDYVVKPFGRQEILARIAAHLR 824
Query: 120 IKN 122
++
Sbjct: 825 FRD 827
>gi|330823313|ref|YP_004386616.1| winged helix family two component transcriptional regulator
[Alicycliphilus denitrificans K601]
gi|329308685|gb|AEB83100.1| two component transcriptional regulator, winged helix family
[Alicycliphilus denitrificans K601]
Length = 236
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDDD + L L GY+V +G V + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDDSIAELLRMHLSDEGYDVERVADGRLGLAAVERGGWHALVLDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMTYYVPIIITSARSSEVHRILGLELGADDYLAKPFSVMELVARVRALLRR 122
>gi|327462011|gb|EGF08340.1| DNA-binding response regulator [Streptococcus sanguinis SK1057]
gi|332362240|gb|EGJ40040.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
Length = 234
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY+V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMIHEGYQVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|310825369|ref|YP_003957727.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309398441|gb|ADO75900.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 1002
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+D+ DMR ++ + L + V + +G A L+L+D++MP MDG
Sbjct: 633 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 691
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ A L KPF R+L+ V +L +
Sbjct: 692 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRL 750
>gi|310825183|ref|YP_003957541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309398255|gb|ADO75714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 1311
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILLA+D+ D+R ++ + L G+ V + +G +A + + P L+LTD++MP +DG
Sbjct: 639 SARILLADDNADIRGYVTQLLTAQGWTVETVPDGEAALARAQAHPPHLVLTDVMMPRLDG 698
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R E + V+ ++ A + L KPF ++LV+ V L
Sbjct: 699 FGLLRALKAHEKTQHVPVILLSARAGEEATVEGMQQGADDYLVKPFSAKELVSRVAARLE 758
Query: 120 I 120
I
Sbjct: 759 I 759
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+ILL ED D+R L L + G+EV + +G +++ + L D+ +P +DG
Sbjct: 1163 KQRILLVEDSADIRDSLSDFLEELGHEVAAARDGVEGVEQLLALRPDVALIDVGLPGIDG 1222
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
E+ARR L ++ +TG+ + L+KP ++ +L V
Sbjct: 1223 YEVARRVRAAPGGEQLYLVALTGYGGPEARAKAKRAGFDLHLTKPINIDELPQVV 1277
>gi|238922876|ref|YP_002936389.1| two-component system response regulator [Eubacterium rectale ATCC
33656]
gi|238874548|gb|ACR74255.1| two-component system response regulator [Eubacterium rectale ATCC
33656]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + L +G+EV N+G S + E F L + D+++P +D
Sbjct: 1 MS-RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKRIREK-KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLAR 118
>gi|238063010|ref|ZP_04607719.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
gi|237884821|gb|EEP73649.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ +G A RE ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVARAIRGE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRR 119
>gi|258406487|ref|YP_003199229.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
5692]
gi|257798714|gb|ACV69651.1| multi-sensor hybrid histidine kinase [Desulfohalobium retbaense DSM
5692]
Length = 1316
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 8/123 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + + L +AG V + G A + E F ++L DI MP MDG++
Sbjct: 1087 HVLVVEDNLLNQEVAQEILEQAGMAVTLADTGERALELAAEHAFDVVLMDIQMPGMDGLQ 1146
Query: 64 LARRATELD--------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + +L V+ +TG A + A ++KPF + L +
Sbjct: 1147 TTQELRRMADKTGKHFLQNLPVIAMTGHAMKSDQNRCLAAGMDDFIAKPFRIDQLFATLQ 1206
Query: 116 RLL 118
R L
Sbjct: 1207 RWL 1209
>gi|172038635|ref|YP_001805136.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|171700089|gb|ACB53070.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
Length = 377
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GY+V NG +A + + + L+L DI MP M+G E+
Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVAPDLILLDINMPSMNGYEV 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + D+ ++FI+ V + ++KPF +++ + LTI+
Sbjct: 68 CQQLKDDPDTKDIPIIFISALDDVLDKVKAFELGGVDYITKPFQAEEVIARIENQLTIQ 126
>gi|304408131|ref|ZP_07389780.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342819|gb|EFM08664.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+A+D+ + + AL + G+EV ++G A V +LL D++MP+++
Sbjct: 1 MSKRILVADDEPGIASAIAYALQREGFEVQVASDGEEALAAVAAFQPHVLLLDVMMPKLN 60
Query: 61 GIELARRA-TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ RR T P V+ +T + ++KPF +R+L+ N LL
Sbjct: 61 GFDVCRRLPTSGRPG--VILLTVKNDIVDKVLGLELGADDYMTKPFDIRELLARTNALLR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|297572194|ref|YP_003697968.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
gi|296932541|gb|ADH93349.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ R L L + GY+V++ +NG A D ++ ++L D+++PEM
Sbjct: 1 MMVTVLIVDDEATFRDVLRFNLNRDGYDVLTASNGVQALDVYKKA--DVILLDLMLPEMS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + + ++ +T + ++KP+ R+LV + +L
Sbjct: 59 GEDVCRKIRQ-HSSVPIIMVTAKESEIDKVVGLEIGADDYVTKPYSYRELVARIRAILRR 117
>gi|228924304|ref|ZP_04087554.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228835330|gb|EEM80721.1| hypothetical protein bthur0011_52580 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 231
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P+
Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNALDLAILDIMLPDAS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF +L+ V L
Sbjct: 61 GLTICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|187933189|ref|YP_001885183.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum B str. Eklund 17B]
gi|187721342|gb|ACD22563.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum B str. Eklund 17B]
Length = 235
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ EDD +R + L Y+ NG +A + +++ D+ +P+M
Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ +R ++ ++ ++ + ++ L+KPF + +L+ + L
Sbjct: 61 DGIEIIKRIR-TWSNVPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|119493257|ref|ZP_01624097.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119452730|gb|EAW33908.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL ED++ + +FL + L GYEV +G + K RE L++ D ++P +
Sbjct: 6 MSTQILLVEDEEALAQFLKQELTYEGYEVTVEQDGMNGLVKARESNPDLIILDWMLPRLS 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR + ++ +T V+ + KPF L + + V +
Sbjct: 66 GIEICRRLRTSHNHVPIILLTAKDEVSDRVTGLDSGANDYIIKPFSLEEFLARVRVHIR 124
>gi|295394466|ref|ZP_06804689.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
gi|294972645|gb|EFG48497.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL ED++ + L LGK GY+V +G A + L+L D+++P
Sbjct: 1 MT-RILLVEDEESISDPLAYLLGKEGYDVTVAADGLQALAEFDSHGADLVLLDLMLPGAS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ +T + ++KP+ R+L+ + ++
Sbjct: 60 GTEVCRQLRAK-SKVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVMRR 118
>gi|257093436|ref|YP_003167077.1| DNA-binding response regulator CreB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045960|gb|ACV35148.1| two component transcriptional regulator, winged helix family
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 226
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + L AL G+ C GA A + L++ D+ +P++ G +
Sbjct: 2 RILIVDDEPAISDTLAYALQAEGFASDCCTLGAEALALLDAGGHDLVVLDVGLPDISGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ V+F+T + ++KPF R++V+ V +L
Sbjct: 62 VCRLLR-RNSDVPVIFLTARSDEVDRIVGLELGADDYVAKPFSPREVVSRVRAILRR 117
>gi|229019899|ref|ZP_04176696.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
gi|228741389|gb|EEL91592.1| hypothetical protein bcere0030_43990 [Bacillus cereus AH1273]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|297200795|ref|ZP_06918192.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197712366|gb|EDY56400.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 269
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 44 RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGAVQTAREFRPDAVVLDMMLPDMDGLA 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 104 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 160
>gi|206978118|ref|ZP_03239001.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217962156|ref|YP_002340726.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|229141404|ref|ZP_04269942.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
gi|229198829|ref|ZP_04325523.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
gi|206743654|gb|EDZ55078.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|217068304|gb|ACJ82554.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|228584665|gb|EEK42789.1| hypothetical protein bcere0001_43500 [Bacillus cereus m1293]
gi|228642185|gb|EEK98478.1| hypothetical protein bcere0013_44970 [Bacillus cereus BDRD-ST26]
gi|324328564|gb|ADY23824.1| DNA-binding response regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 229
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|161522391|ref|YP_001585320.1| two component transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|221198526|ref|ZP_03571571.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD2M]
gi|221207755|ref|ZP_03580762.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD2]
gi|160345944|gb|ABX19028.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans ATCC 17616]
gi|221172252|gb|EEE04692.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD2]
gi|221180977|gb|EEE13379.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD2M]
Length = 272
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 38 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGL 97
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 98 EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRR 155
>gi|58040033|ref|YP_191997.1| two component response regulator [Gluconobacter oxydans 621H]
gi|58002447|gb|AAW61341.1| Two component response regulator [Gluconobacter oxydans 621H]
Length = 241
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD ++R L + L + + V + + A + L++ D+++P G+E
Sbjct: 8 HLLVVDDDREIRELLSQFLERNHFRVTAARDAREARKAWANGHYQLVVLDLMLPGESGLE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR D ++ ++ +T + ++KPF+ R+L+ + +L
Sbjct: 68 VARWLRSQD-NVPIIMLTAMSDETDRIIGLESGADDYVAKPFNPRELLARIRAVLRR 123
>gi|172058846|ref|YP_001815306.1| two component transcriptional regulator [Exiguobacterium sibiricum
255-15]
gi|171991367|gb|ACB62289.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sibiricum 255-15]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ EDD + R L L AGY NG E L+L D++MPE+
Sbjct: 1 MAPTILIVEDDSKIARLLELELNHAGYATQVAFNGKDGL-VAAENDIDLVLLDVMMPELS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + V+ +T V ++KPF + +L+ + LL +
Sbjct: 60 GFEVLRRLRGKGNPVPVILLTARGEVYDKVAGLDLGANDYVTKPFEIEELLARIRGLLRL 119
>gi|238925846|ref|YP_002939364.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
gi|238877523|gb|ACR77230.1| DNA-binding response regulator [Eubacterium rectale ATCC 33656]
Length = 248
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ +D+ D+ L L Y V A + L + DI++P+M+
Sbjct: 18 MSEKILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMN 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ +T ++KPF ++V V L
Sbjct: 78 GFSLCQLIRKKY-TYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRR 136
>gi|229043767|ref|ZP_04191467.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH676]
gi|229069548|ref|ZP_04202837.1| Two component transcriptional regulator, winged helix [Bacillus
cereus F65185]
gi|228713687|gb|EEL65573.1| Two component transcriptional regulator, winged helix [Bacillus
cereus F65185]
gi|228725568|gb|EEL76825.1| Two component transcriptional regulator, winged helix [Bacillus
cereus AH676]
Length = 232
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G A + E+ + L D+++P +D
Sbjct: 4 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEALQILSEQTVDIALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 63 GLEVCKAIRKENEKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122
>gi|254452863|ref|ZP_05066300.1| phosphate regulon transcriptional regulatory protein PhoB
[Octadecabacter antarcticus 238]
gi|198267269|gb|EDY91539.1| phosphate regulon transcriptional regulatory protein PhoB
[Octadecabacter antarcticus 238]
Length = 227
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q +L+ ED+ R L L GY V + NG V E+ +++ D ++P +
Sbjct: 1 MTQPHVLVIEDEPAQREVLSYNLNAEGYRVTTAENGEQGLLVVAEDAPDVIVLDWMLPHV 60
Query: 60 DGIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ R+ + ++ ++ + + KP+ + +L+ V
Sbjct: 61 SGIEICRQLKTRNDTRTIPIIMLSARSEEVDKVRGLETGADDYVVKPYAVAELMARVRTQ 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|254423297|ref|ZP_05037015.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196190786|gb|EDX85750.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 685
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L+++L + Y V + ++G + + LLL D+ +P +DGI
Sbjct: 2 RILLIEDDEVLTSALVESLQQQRYTVDTADDGRFGLEYAESASYDLLLVDVGLPRLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T A L+KP + +L + LL
Sbjct: 62 LCRELRDRNYTTPILLMTAKDAADEKIRGLDAGADDYLTKPLDINELHARLRALLRR 118
Score = 93.3 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 8/123 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L +DD + L L G+ + + + + + + LL+ DI MP DGIE
Sbjct: 402 TLLAVDDDPILLGTLSPLLEPWGFSITTLADSTKFWQTLTKVDPDLLILDIEMPGPDGIE 461
Query: 64 LARRATE------LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
L L ++F+T + A + KP +L+ +N
Sbjct: 462 LCHAVRNDPRDGGHWQSLPILFLTAR--ENAAAEVFAAGADDYVVKPIVGPELITRINNR 519
Query: 118 LTI 120
L
Sbjct: 520 LER 522
>gi|126661124|ref|ZP_01732204.1| Two Component Transcriptional Regulator, LuxR family protein
[Cyanothece sp. CCY0110]
gi|126617600|gb|EAZ88389.1| Two Component Transcriptional Regulator, LuxR family protein
[Cyanothece sp. CCY0110]
Length = 219
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +LL +DD ++ + L GY+V + NG A + + +E +++ D++MPEMDG
Sbjct: 12 NKHLLLVDDDPNLVLLVKDYLEFQGYDVTTAENGKEALEILTKEIPDMIICDVMMPEMDG 71
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + + VMF++ + KPF +LV +V L
Sbjct: 72 YSLIEKVRQDARTSWVPVMFLSAKGQSQDRVKGLNTGADVYMVKPFEPEELVAQVESSLK 131
>gi|115377600|ref|ZP_01464797.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
gi|310820429|ref|YP_003952787.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|115365401|gb|EAU64439.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
gi|309393501|gb|ADO70960.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 1020
Score = 145 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + L + V + +GA+A D P L+LTD++MP +DG
Sbjct: 634 RILLADDNADMREYVARLLSPR-WTVEAVADGAAALDVALARPPDLVLTDVMMPRLDGFG 692
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ ++ A + L KPF R+L+ V+ L I
Sbjct: 693 LLRALRSQASTRAIPVIMLSARAGEEARVEGMEAGADDYLVKPFSARELLARVSARLEI 751
>gi|331663726|ref|ZP_08364636.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli TA143]
gi|284922212|emb|CBG35294.1| acetoacetate metabolism regulator (two-component system response
regulator) [Escherichia coli 042]
gi|331059525|gb|EGI31502.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli TA143]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|215487439|ref|YP_002329870.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
O127:H6 str. E2348/69]
gi|215265511|emb|CAS09913.1| fused response regulator of ato operon, in two-component system
with AtoS [Escherichia coli O127:H6 str. E2348/69]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|197118248|ref|YP_002138675.1| winged-helix phosphate transcriptional response regulator
[Geobacter bemidjiensis Bem]
gi|197087608|gb|ACH38879.1| winged-helix phosphate transcriptional response regulator
[Geobacter bemidjiensis Bem]
Length = 226
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ ED+ D+ L L + GY+ V +GA + V L+L D+++P M G
Sbjct: 2 QTVLIIEDEKDLAELLSFNLEREGYKTVIALDGAEGLEAVERVQPDLILLDLMLPGMFGT 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + E + V+ +T + KPF R+L+ V +L
Sbjct: 62 DVCKTVKKSEKSAHIPVVMLTAKGEEIDKVVGFEVGADDYVIKPFSTRELMLRVKAVLRR 121
Query: 121 K 121
K
Sbjct: 122 K 122
>gi|83745618|ref|ZP_00942676.1| OmpR [Ralstonia solanacearum UW551]
gi|83727695|gb|EAP74815.1| OmpR [Ralstonia solanacearum UW551]
Length = 245
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG
Sbjct: 3 STKILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D+ V+ +T L KPF R+L+ +N +L +
Sbjct: 63 LSALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|255526457|ref|ZP_05393368.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296184830|ref|ZP_06853241.1| regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255509839|gb|EET86168.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296050612|gb|EFG90035.1| regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD+D+R L L +E+ NG A++ + ++ L++ D+++P+++G+
Sbjct: 2 EKILIVEDDEDIRDILKIYLKAESFEIWEAENGKQAFEILEDKKPDLVILDLMLPDINGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ IT A ++KPF+ +++ V L
Sbjct: 62 NICKSIRTKYKY-PIIMITAKTADQDKIIGLTYGADDYITKPFNPLEVMARVKAQLRR 118
>gi|254486555|ref|ZP_05099760.1| two component response regulator [Roseobacter sp. GAI101]
gi|214043424|gb|EEB84062.1| two component response regulator [Roseobacter sp. GAI101]
Length = 225
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAEDD + +++ L + G+ V ++G A + + D ++P MDG+
Sbjct: 2 KILLAEDDPKIADYIVAGLSENGHSVDHVSDGRDALSYCLYNDCDMAILDRMLPGMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + L V+F+T V + A L+KPFH +L ++ ++ K+
Sbjct: 62 VLKALRASKKSLPVLFLTALGQVEDRVEGLAAGGDDYLTKPFHFSELTARIDAIVRRKS 120
>gi|49187559|ref|YP_030812.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|118479811|ref|YP_896962.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
gi|49181486|gb|AAT56862.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|118419036|gb|ABK87455.1| DNA-binding response regulator [Bacillus thuringiensis str. Al
Hakam]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 66 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 122
>gi|332361250|gb|EGJ39054.1| DNA-binding response regulator [Streptococcus sanguinis SK1056]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L + GY V+ +G D R++ L++TDI+MP MD
Sbjct: 1 MGKTILLVDDEMDILDIQKRYLMQDGYHVLVARDGVEGLDLFRKKSVDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN +L
Sbjct: 61 GYDFISEVQYIVPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNILRR 120
>gi|330995207|ref|ZP_08319120.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329576349|gb|EGG57863.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 1311
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+D+ R +L + L + + V+ ++G ++ +++TD++MP+MDGIE
Sbjct: 1065 TILLVEDNDEFRHYLQEELSRH-FTVLEASDGEEGETVALQQKPDIIITDLMMPKMDGIE 1123
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R + V+ +T A+V ++KPF L ++ LL +
Sbjct: 1124 LCKRIKHNIEVSHIPVILLTASASVENEERGYKEGADAYMTKPFKWEILTARIHNLLAQR 1183
>gi|319955728|ref|YP_004166995.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
gi|319424388|gb|ADV51497.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
Length = 237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L ++VV NG ++K +++ + + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLSMNDFDVVLAKNGMEGFEKFKKDNYDICILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T L+KPF L+ ++ +L K
Sbjct: 65 FTLAKEIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124
>gi|297562775|ref|YP_003681749.1| two component transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847223|gb|ADH69243.1| two component transcriptional regulator, winged helix family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 222
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GY V NG D+ R L++ D+ +PEMDG+E+
Sbjct: 4 VLLAEDDVSISEPLARALRREGYTVDVTVNGVETLDRARAGDIDLMVLDLGLPEMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T A ++KPF L +L+ V LL
Sbjct: 64 ARRLRAEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|283783078|ref|YP_003373832.1| response regulator receiver domain protein [Gardnerella vaginalis
409-05]
gi|298253498|ref|ZP_06977288.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis 5-1]
gi|283442136|gb|ADB14602.1| response regulator receiver domain protein [Gardnerella vaginalis
409-05]
gi|297532265|gb|EFH71153.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis 5-1]
Length = 250
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ + + + G+ +GASA + L++ DI++P MDGI
Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVATDGASAVRAAEQLKPDLIIMDIMLPIMDGI 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR P + ++ +T A A + ++KPF R+L+ LL
Sbjct: 72 EATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128
>gi|302521973|ref|ZP_07274315.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|318059392|ref|ZP_07978115.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|318079003|ref|ZP_07986335.1| two-component system response regulator [Streptomyces sp. SA3_actF]
gi|302430868|gb|EFL02684.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 219
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + R L LG GY V ++G + E + L++ DI++P M+G
Sbjct: 2 RLLIVEDERRLARSLALGLGAEGYAVDVAHDGTEGLHRATEGGYDLIVLDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D ++ +T + L+KPF L V LL +
Sbjct: 62 VCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRR 119
>gi|220908331|ref|YP_002483642.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
gi|219864942|gb|ACL45281.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 652
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD + L+ L Y V + +G +D ++ + L+L D+ +P+ DGI
Sbjct: 2 KILLIEDDPVLTDVLVSTLRVQRYIVDAVADGRRGWDYAQDTSYDLILMDVGLPQQDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + ++ IT A L+KP L +L V LL
Sbjct: 62 LCRRLRAQGSQVPILLITAQDAKVDRIAGLDAGADDYLTKPLDLAELQARVRALLRR 118
Score = 107 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +DD ++ L G + NN + + LL+ D+ MP+ GIEL
Sbjct: 382 VLLVDDDPIFLEQIVLLLQPWGIHLTGINNPLELWSVLPSTRPDLLILDVEMPQTSGIEL 441
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L ++F+T ++KP + +L+ + L
Sbjct: 442 CQSLRSDPEWQSLPIIFLTAHRDRETIQQVFTVGADDFVTKPVVVPELLTRIINRLER 499
>gi|254412104|ref|ZP_05025879.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196181070|gb|EDX76059.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 450
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ FL + L ++ ++V+ +G SA ++V+ L+L D++MP +DG
Sbjct: 10 KLLIVDDNPTNLGFLFEYLTQSDFKVLVALDGESAIEQVQYAQPDLILLDVMMPGLDGFT 69
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+F+T + ++KP +++ V L ++
Sbjct: 70 TCKHLKSDPSTQDIPVIFMTALSDTVDKVQGFKIGAVDYITKPLQPEEVLCRVQTHLALR 129
Query: 122 N 122
N
Sbjct: 130 N 130
>gi|89069576|ref|ZP_01156920.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanicola granulosus HTCC2516]
gi|89044911|gb|EAR51001.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanicola granulosus HTCC2516]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ +G A V+E+ +++ D ++P + GIE
Sbjct: 8 HVLIVEDEPAQREVLGYNLEAEGFRTSRAEDGEQALMLVQEDRPDVMVLDWMLPNLSGIE 67
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D+ ++ ++ + + KP+ + +L+ V L
Sbjct: 68 VCRQLKSRPDTRDVAIIMLSARSEEVDKVRGLETGADDYVVKPYSVSELMARVRTQLRR 126
>gi|326317102|ref|YP_004234774.1| winged helix family two component transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373938|gb|ADX46207.1| two component transcriptional regulator, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + FL + L GY V G + R +LL+ D+++P M G++L
Sbjct: 6 ILVVEDDPRVADFLQRGLRAEGYGVQMARTGPEGLELARAGEATLLILDVMLPGMTGLDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T +++ L+KPF +L+ + LL
Sbjct: 66 CQSLRAEGGQVPVLMLTALSSIEDKVAGLKLGADDYLTKPFAFEELLARIEALLRR 121
>gi|219855998|ref|YP_002473120.1| hypothetical protein CKR_2655 [Clostridium kluyveri NBRC 12016]
gi|219569722|dbj|BAH07706.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 52/122 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ M + + L + Y V NG S D + +++ DI++P+MD
Sbjct: 1 MKMRILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L + + V+ +T L+KPF +L+ + L
Sbjct: 61 GISLLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRR 120
Query: 121 KN 122
K+
Sbjct: 121 KS 122
>gi|123443580|ref|YP_001007553.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122090541|emb|CAL13410.1| putative response regulator [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + P +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR P+L V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRILAQVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRR 120
>gi|323967662|gb|EGB63074.1| sigma-54 interaction domain-containing protein [Escherichia coli
M863]
gi|327252489|gb|EGE64148.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
STEC_7v]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|312129598|ref|YP_003996938.1| histidine kinase [Leadbetterella byssophila DSM 17132]
gi|311906144|gb|ADQ16585.1| histidine kinase [Leadbetterella byssophila DSM 17132]
Length = 1259
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED D+R ++ + L + ++V+ NG +E L++TD++MP MDG+ L
Sbjct: 1014 ILVVEDHTDLRDYIAETLKEK-FQVIVAANGQEGLRLAKEHMPELIITDLMMPVMDGMSL 1072
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R+ E + ++ +T + A L+KPF + +++ + LL
Sbjct: 1073 SRKLRENIHTSHIPIILLTAKDTTEDRIEGYELGIASYLTKPFSAQLVISRIENLL 1128
>gi|312793664|ref|YP_004026587.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
gi|312180804|gb|ADQ40974.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kristjanssonii 177R1B]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KNILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|303256488|ref|ZP_07342502.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
1_1_47]
gi|330999059|ref|ZP_08322783.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Parasutterella excrementihominis YIT 11859]
gi|302859979|gb|EFL83056.1| DNA-binding response regulator PhoB [Burkholderiales bacterium
1_1_47]
gi|329575646|gb|EGG57177.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Parasutterella excrementihominis YIT 11859]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ + + +G EV N A A + ++L D ++P+
Sbjct: 2 MTTSVLIVEDEPSILELISYTCRTSGMEVRKAANVAEAKKNLEAAKPDIILLDWMLPDCA 61
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ R + L V+ +T ++KPF R+LV + ++
Sbjct: 62 GLDWLRELRSYHSNESLPVIMLTARGQEDDRVRGLEAGADDYVTKPFSPRELVARIRAVI 121
Query: 119 TIK 121
K
Sbjct: 122 RRK 124
>gi|300866265|ref|ZP_07110976.1| two component LuxR family transcriptional regulator [Oscillatoria
sp. PCC 6506]
gi|300335736|emb|CBN56136.1| two component LuxR family transcriptional regulator [Oscillatoria
sp. PCC 6506]
Length = 215
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 9/129 (6%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++++L +DD ++ + L GY+VV+ NG A +K+ E+ L++ D++MPEMDG
Sbjct: 10 KRLMLVDDDPNLILLVKDYLEFRGYDVVTAENGREALEKLEEDLPDLIICDVMMPEMDGY 69
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN----- 115
L + E + V+F++ + + KPF +LV +V
Sbjct: 70 TLVKHVREDPRTSWIPVLFLSAKGQSQDRVKGLSTGADVYIVKPFEPEELVAQVESSLKQ 129
Query: 116 --RLLTIKN 122
RL+ +N
Sbjct: 130 ATRLIRHQN 138
>gi|299147147|ref|ZP_07040214.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298515032|gb|EFI38914.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1338
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ D+ ++L + + V+ +NG A + + +E ++++D++MPEMDG+E
Sbjct: 1082 TVLLVEDNVDLLNLTRESLAEW-FRVLRASNGREALEVLAKENVDVIVSDVMMPEMDGLE 1140
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1141 LCSKVKSEISYSHIPVILLTAKTTLESKVEGLECGADVYVEKPFSVKQLRMQIENLLKLR 1200
>gi|331647875|ref|ZP_08348967.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli M605]
gi|281179312|dbj|BAI55642.1| two-component response regulator [Escherichia coli SE15]
gi|330912051|gb|EGH40561.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
AA86]
gi|331043599|gb|EGI15737.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli M605]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|213610207|ref|ZP_03370033.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 158
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|197122377|ref|YP_002134328.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
gi|220917159|ref|YP_002492463.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
gi|196172226|gb|ACG73199.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. K]
gi|219955013|gb|ACL65397.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
Length = 473
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++RR L L + GYEV + +G A + P +++TD+VMP + G+E
Sbjct: 3 HVLIVDDEVNIRRVLAAMLKREGYEVTTAADGEQALGVLHRTPVHVVVTDLVMPRVGGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-----L 118
L RR ++ PD+ V+ IT +V + ++KPF +L + + L
Sbjct: 63 LLRRVSQDFPDVPVILITAHGSVDSAVAALKAGAFDYITKPFEQEELKKVIAKAARAHDL 122
Query: 119 TIKN 122
+N
Sbjct: 123 ERQN 126
>gi|139439532|ref|ZP_01772964.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
25986]
gi|133775085|gb|EBA38905.1| Hypothetical protein COLAER_01991 [Collinsella aerofaciens ATCC
25986]
Length = 259
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + RF+ L GY+V +G +A D E + L+L D+++P+++G+E
Sbjct: 3 RILIVEDEEKIARFVTLELEHEGYQVEHAADGRTAVDLALERNYDLILLDVLLPQLNGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ V+ +T AV L+KPF + +L + L
Sbjct: 63 VLRRVRK-HKDVPVIMVTARDAVMDKVAGLDAGADDYLTKPFAIEELFARIRVALKR 118
>gi|30264741|ref|NP_847118.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47778345|ref|YP_021563.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|167633821|ref|ZP_02392144.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167638012|ref|ZP_02396290.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170685925|ref|ZP_02877148.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170705358|ref|ZP_02895822.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177651324|ref|ZP_02934155.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190568258|ref|ZP_03021166.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196033267|ref|ZP_03100680.1| DNA-binding response regulator [Bacillus cereus W]
gi|196040860|ref|ZP_03108158.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|196044024|ref|ZP_03111261.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|227817460|ref|YP_002817469.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228917319|ref|ZP_04080873.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228948416|ref|ZP_04110699.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229093770|ref|ZP_04224869.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
gi|229124237|ref|ZP_04253429.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
gi|229186929|ref|ZP_04314084.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
gi|229603997|ref|YP_002868949.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254687479|ref|ZP_05151335.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254725042|ref|ZP_05186825.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254736780|ref|ZP_05194486.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254741817|ref|ZP_05199504.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254757417|ref|ZP_05209444.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30259416|gb|AAP28604.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47552050|gb|AAT34038.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|167513829|gb|EDR89197.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167530622|gb|EDR93324.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170129483|gb|EDS98346.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170670389|gb|EDT21129.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172083150|gb|EDT68212.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190560514|gb|EDV14491.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195994696|gb|EDX58651.1| DNA-binding response regulator [Bacillus cereus W]
gi|196025360|gb|EDX64030.1| DNA-binding response regulator [Bacillus cereus 03BB108]
gi|196028314|gb|EDX66923.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|227005140|gb|ACP14883.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|228596666|gb|EEK54331.1| hypothetical protein bcere0004_44700 [Bacillus cereus BGSC 6E1]
gi|228659539|gb|EEL15187.1| hypothetical protein bcere0016_45220 [Bacillus cereus 95/8201]
gi|228689655|gb|EEL43463.1| hypothetical protein bcere0021_44940 [Bacillus cereus Rock3-42]
gi|228811403|gb|EEM57741.1| hypothetical protein bthur0007_45420 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228842309|gb|EEM87403.1| hypothetical protein bthur0012_45300 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229268405|gb|ACQ50042.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|149365128|ref|ZP_01887163.1| putative two-component response regulator [Yersinia pestis
CA88-4125]
gi|165926923|ref|ZP_02222755.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165935925|ref|ZP_02224495.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. IP275]
gi|167422671|ref|ZP_02314424.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167467549|ref|ZP_02332253.1| putative two-component response regulator [Yersinia pestis FV-1]
gi|218930056|ref|YP_002347931.1| putative two-component response regulator [Yersinia pestis CO92]
gi|229838602|ref|ZP_04458761.1| putative two-component response regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229899168|ref|ZP_04514311.1| putative two-component response regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|115348667|emb|CAL21612.1| putative two-component response regulator [Yersinia pestis CO92]
gi|149291541|gb|EDM41615.1| putative two-component response regulator [Yersinia pestis
CA88-4125]
gi|165916070|gb|EDR34677.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921274|gb|EDR38498.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. F1991016]
gi|166958378|gb|EDR55399.1| DNA-binding response regulator [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|229687570|gb|EEO79643.1| putative two-component response regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694968|gb|EEO85015.1| putative two-component response regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +R L++ L GY ++ NG A R++ ++ DI+MPE+D +
Sbjct: 2 KILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDSYK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D ++F++ +SKPF + ++ + ++
Sbjct: 62 VCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRR 118
>gi|298483350|ref|ZP_07001528.1| two-component system sensor histidine kinase/response [Bacteroides
sp. D22]
gi|298270479|gb|EFI12062.1| two-component system sensor histidine kinase/response [Bacteroides
sp. D22]
Length = 1353
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|283788574|ref|YP_003368439.1| two-component response regulator [Citrobacter rodentium ICC168]
gi|282952028|emb|CBG91757.1| two-component response regulator [Citrobacter rodentium ICC168]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ + L ED+ + LI L + G+ V + G A ++ R + + + D+ +P++
Sbjct: 4 MS--VWLVEDEQGIADTLIYMLQQEGFTVEAFERGLPALERSRHQCPDVAILDVGLPDIS 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL RR E P L V+F+T + ++KPF R++ V LL
Sbjct: 62 GFELCRRLLERHPSLPVLFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|253699900|ref|YP_003021089.1| transcriptional regulator [Geobacter sp. M21]
gi|251774750|gb|ACT17331.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M21]
Length = 225
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ D+ + L + GY + ++GA+ + R L+L D+++P M G E
Sbjct: 3 TVLVIEDEKDLAELVAFHLEQEGYCCLVAHDGAAGLAEARRCKPDLILLDLMLPGMMGTE 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R EL + V+ +T + KPF R+L+ V +L K
Sbjct: 63 VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122
>gi|160887460|ref|ZP_02068463.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
gi|294805850|ref|ZP_06764723.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|156107871|gb|EDO09616.1| hypothetical protein BACOVA_05479 [Bacteroides ovatus ATCC 8483]
gi|294446949|gb|EFG15543.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 1353
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|170783570|ref|YP_001740087.1| CheY-like response regulator [Arthrobacter sp. Chr15]
gi|150035078|gb|ABR67074.1| CheY-like response regulator [Arthrobacter sp. Chr15]
Length = 247
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ M L + L + GY V + + + ++ D+++P G E
Sbjct: 18 RVLVVEDEPKMAGLLRRGLAEEGYAVDVAADSPAGLSAASGGGYDAVVLDVMLPGFPGFE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E ++ V+ +T AV L+KPFHL +L+ + L
Sbjct: 78 LCRRLRERGIEVPVLMLTARDAVDDRVRGLDSGADDYLAKPFHLEELLARLRALTRR 134
>gi|148240129|ref|YP_001225516.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147848668|emb|CAK24219.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 53/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD + +FL++ L + G N GA A +R++ F L++ D +P+ +GIE+
Sbjct: 10 LIVDDDPKLLQFLLEELSQDGIVCQGANCGAEALLLLRQQRFDLVVLDWNLPDFNGIEIC 69
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+ +T + + ++KPF L +L V L
Sbjct: 70 RRLRSSGDTTPVLMLTAHHDLEDRVQALDLGADDYITKPFELPELHARVRAQLRR 124
>gi|119485362|ref|ZP_01619690.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
gi|119457118|gb|EAW38244.1| two-component hybrid sensor and regulator [Lyngbya sp. PCC 8106]
Length = 372
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D D L AL + G+ VV +G +A +++ P +L+L D++MPEMDG E+
Sbjct: 12 ILAVDDLPDNLFLLKLALEQEGHNVVLVEDGKTALEQIEASPPNLVLLDVMMPEMDGYEV 71
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R P + ++ IT + + + KP + +L V LL +K
Sbjct: 72 TKRIRSNPKYPYIPILLITAH-EQSSVVEGLDAGADDFIRKPVQIDELQARVRSLLRLK 129
>gi|115377140|ref|ZP_01464354.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
DW4/3-1]
gi|310822862|ref|YP_003955220.1| phosphate regulon transcriptional regulatory protein phob
[Stigmatella aurantiaca DW4/3-1]
gi|115365849|gb|EAU64870.1| DNA-binding response regulator PhoB [Stigmatella aurantiaca
DW4/3-1]
gi|309395934|gb|ADO73393.1| Phosphate regulon transcriptional regulatory protein PhoB
[Stigmatella aurantiaca DW4/3-1]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +D+ D+ + L AG+ G +A E P L+L D+++P++
Sbjct: 1 MS-HVLIVDDERDLAELIDFNLQAAGFSTRVAATGEAALTAASEHPPHLVLLDLMLPDIS 59
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R+ L D+ V+ +T A ++KPF +R+LV + +L
Sbjct: 60 GTEVCRQLRSNALTRDVLVVMLTAKGEEADRVRGFEVGADDYVTKPFSVRELVLRIKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|315180653|gb|ADT87567.1| Response regulator [Vibrio furnissii NCTC 11218]
Length = 241
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEM 59
N IL+ +DD ++ L + L K+G+ V + ++G A + + L+L D+++P
Sbjct: 3 NTHILVVDDDIEICELLDEYLSKSGFSVATVSDGR-ALAQYLTDHGYPDLVLLDVMLPGE 61
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ D ++ ++ +T + ++KPF R L+ + LL
Sbjct: 62 DGFTLCQKIR-RDSNVPIIMLTAVSDETDQIIGLDIGADDYIAKPFSPRQLMARIKALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|300718589|ref|YP_003743392.1| two-component system response regulator [Erwinia billingiae Eb661]
gi|299064425|emb|CAX61545.1| Two-component system response regulator [Erwinia billingiae Eb661]
Length = 220
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + L++AL GY V + NGA A ++ +SL++ D+ +P+ DG +
Sbjct: 2 KLLVVEDDALLLGGLVQALTTEGYAVDAAKNGAEACALLQSGQYSLIVLDLGLPDRDGRQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + DL V+ +T A+ D L KPF L +L V L+
Sbjct: 62 LLRQWRKETIDLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELKARVRALIRR 118
>gi|293374016|ref|ZP_06620355.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292630977|gb|EFF49616.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 1353
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|282861008|ref|ZP_06270074.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282564744|gb|EFB70280.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 228
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G + +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|229109465|ref|ZP_04239057.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-15]
gi|228673962|gb|EEL29214.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-15]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ +R F++ L +AG+ V+ G + E+ + L D+++P +D
Sbjct: 4 MS-KILVLEDELTIRSFIVLNLKRAGFYVIEATTGEEGLQILSEQTVDIALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + + ++ +T ++KPF L + LL
Sbjct: 63 GLEVCKAIRKENKKMGIIMLTARVQDEDKVQGLGIGADDYIAKPFSPVVLTARIQSLLRR 122
>gi|291286699|ref|YP_003503515.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
gi|290883859|gb|ADD67559.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ KIL+ +DD ++ L + L G+ + + +NG V + F L++ D+++P
Sbjct: 1 MNKNSKILVIDDDVELCELLSEYLEAEGFSIKAVHNGKEGASTVIDSDFDLIILDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M G ++ + + ++ +T L KP++ R+L+ + +L
Sbjct: 61 MGGFDVLKTIRSV-KMTPILMLTAKGDDIDKILGLEIGADDYLPKPYNPRELLARIKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|227515346|ref|ZP_03945395.1| two component response regulator [Lactobacillus fermentum ATCC
14931]
gi|227086260|gb|EEI21572.1| two component response regulator [Lactobacillus fermentum ATCC
14931]
Length = 223
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILLAED+ + R L+ A+ GY V NG A D + + +++ DI+MP+++
Sbjct: 1 MN--ILLAEDEKQLSRALVTAMQANGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ + V+ +T A + L+KPF L++L+ + L
Sbjct: 59 GIEALKQLRQTGNKTYVIMLTAMAEIDDKVTGLDAGADDYLTKPFSLKELLARLRS-LER 117
Query: 121 KN 122
++
Sbjct: 118 RS 119
>gi|150003880|ref|YP_001298624.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
gi|149932304|gb|ABR39002.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + + +G K E+ +L+ D++MP M
Sbjct: 1 MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ RR + D V+F+T +A+ L KPF +++L+ + L+
Sbjct: 61 DGFEMVRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119
>gi|126651030|ref|ZP_01723241.1| two-component response regulator [Bacillus sp. B14905]
gi|126592231|gb|EAZ86280.1| two-component response regulator [Bacillus sp. B14905]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +DD D+R + L GY V+ +G A DK+ L++ DI+MP M
Sbjct: 1 MTKLTVLVTDDDQDIRDGIEIYLKNEGYNVIKAADGLDAIDKLENNEVHLIILDIMMPNM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + ++ ++ ++ A + ++KPFH +L+ V L
Sbjct: 61 DGITATFKIRAER-NIPIIMLSAKAEDGDKIHGLSVGADDYVTKPFHPLELLARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|159038626|ref|YP_001537879.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917461|gb|ABV98888.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D+ + + + L + GY+V +G +A D RE+ +++ D+++P +D
Sbjct: 1 MSGQVLVVDDERSLAKVVASYLARDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ RR D V+ +T A L+KPF R+LV V +
Sbjct: 61 GVEVCRRLR-TFSDCYVIMLTARTEEADKLTGLGVGADDYLTKPFSPRELVARVAAM 116
>gi|293380991|ref|ZP_06627022.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
gi|290922454|gb|EFD99425.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
Length = 239
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ L Y+VV +G A D +E +L+L D ++P DG+
Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ ++ +T + + + L+KPF + +L+ + +L
Sbjct: 67 VLRRIRKQ-SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122
>gi|119511740|ref|ZP_01630843.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119463577|gb|EAW44511.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 412
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D R L GYEV+ +G +A V+++ L+L D++MP MDG E
Sbjct: 95 TILVVDDHTMSRISAAALLSMEGYEVIEAESGHTALLMVKQKQPDLILLDVMMPIMDGFE 154
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E + ++FIT LSKPF +L V L+ K
Sbjct: 155 VCQRLKQDEHTRLIPIIFITALNDRRSRIRGIEVGADDFLSKPFDNVELTARVKSLVRQK 214
>gi|88856021|ref|ZP_01130683.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
gi|88814888|gb|EAR24748.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
Length = 250
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+ +D+D + L AL G++V ++G A +RE +++ DI+MP +DG+ +
Sbjct: 28 VVDDEDSLTDLLSMALRYEGWDVRLASDGPQALATIREFRPDVVVLDIMMPGLDGLAVLT 87
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R ++F+T +V ++KPF L +LV + LL +
Sbjct: 88 RLRADGIQTPILFLTAKDSVDDRIAGLTVGGDDYVTKPFSLEELVARLRALLRRSS 143
>gi|258513815|ref|YP_003190037.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257777520|gb|ACV61414.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ + + L Y V NG + V E L + D+++P+MDG +
Sbjct: 8 ILIADDEQAIADLVAVYLENENYHVFKFYNGKDTLNCVENERLDLAILDVMLPDMDGFSI 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + V+ +T ++KPF +L+ V L
Sbjct: 68 CQQIREKH-NFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELIARVKAQLRR 122
>gi|254880878|ref|ZP_05253588.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|319639886|ref|ZP_07994615.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
gi|254833671|gb|EET13980.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|317388550|gb|EFV69400.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + + +G K E+ +L+ D++MP M
Sbjct: 1 MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ RR + D V+F+T +A+ L KPF +++L+ + L+
Sbjct: 61 DGFEMVRRIRQSDKPTPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119
>gi|225573642|ref|ZP_03782397.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
10507]
gi|225039010|gb|EEG49256.1| hypothetical protein RUMHYD_01836 [Blautia hydrogenotrophica DSM
10507]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R+ + L Y +S NG SA + ++L D+ +P+M
Sbjct: 1 MNKLLILVVEDDPSIRKLITTTLKAHEYRYLSAANGQSAILEASSHNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ R+ ++ ++ I+ + + ++ L+KPF + +L+ +
Sbjct: 61 DGVEIIRKIRA-WSNMPIIVISARSEDSDKIEALDAGADDYLTKPFSVEELLARLR 115
>gi|145593184|ref|YP_001157481.1| two component transcriptional regulator [Salinispora tropica
CNB-440]
gi|145302521|gb|ABP53103.1| two component transcriptional regulator, winged helix family
[Salinispora tropica CNB-440]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ +D+ + + + L + GY+V +G +A D RE+ +++ D+++P +DG
Sbjct: 12 NGRVLVVDDEQSLAKVVASYLERDGYQVRCVFDGPAALDAAREDEPDVVVLDLMLPGLDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+E+ RR D V+ +T L+KPF R+LV V +
Sbjct: 72 VEVCRRLRA-FSDCYVIMLTARTEETDKLTGLGVGADDYLTKPFSPRELVARVAAM 126
>gi|87200632|ref|YP_497889.1| two component transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87136313|gb|ABD27055.1| two component transcriptional regulator, winged helix family
[Novosphingobium aromaticivorans DSM 12444]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I+L EDD +R +AL + GY V + GA + + EP L++ DI++P GIEL
Sbjct: 6 IVLVEDDGPLRTLTARALRENGYTVRTAATGAEMWVALESEPADLVVLDIMLPGTSGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ ++F++ + L KPF R+LV + +L
Sbjct: 66 FRRLRRQ-SDVPIIFVSARGSEEDRVLGLELGADDYLPKPFSTRELVARIGAVLRR 120
>gi|257869521|ref|ZP_05649174.1| transcriptional regulator [Enterococcus gallinarum EG2]
gi|9294730|gb|AAF86641.1|AF162694_5 response regulator VanRc [Enterococcus gallinarum]
gi|67479938|gb|AAY67971.1| reponse regulator [Enterococcus gallinarum]
gi|257803685|gb|EEV32507.1| transcriptional regulator [Enterococcus gallinarum EG2]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KI++ +D+ ++ + L G+ V +G SA + +E L + D+++P++D
Sbjct: 1 MSEKIVVVDDEKEIADLVTTFLQNEGFSVQPFYDGTSAIAYIEKEAIDLAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQQIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|229127229|ref|ZP_04256226.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
gi|228656345|gb|EEL12186.1| Two-component response regulator vanR [Bacillus cereus BDRD-Cer4]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|224537165|ref|ZP_03677704.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
14838]
gi|224521220|gb|EEF90325.1| hypothetical protein BACCELL_02042 [Bacteroides cellulosilyticus DSM
14838]
Length = 1288
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+R FL + Y ++ NG A++ +++E L+++D++MP+MDG EL
Sbjct: 1043 ILIVDDNKDLRNFLKCSFENQ-YNILEAGNGNEAWELLQKESPELIISDVMMPDMDGFEL 1101
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + + ++KPF + L + L+ +
Sbjct: 1102 CKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMRNR 1160
>gi|58337702|ref|YP_194287.1| two-component response regulator [Lactobacillus acidophilus NCFM]
gi|227904348|ref|ZP_04022153.1| two component response regulator [Lactobacillus acidophilus ATCC
4796]
gi|58255019|gb|AAV43256.1| two-component response regulator [Lactobacillus acidophilus NCFM]
gi|227867996|gb|EEJ75417.1| two component response regulator [Lactobacillus acidophilus ATCC
4796]
Length = 221
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ + R L A+ KAGYEV +NG A + ++ + +++ DI+MP MDGI
Sbjct: 2 KILVAEDEPQLLRVLTVAMQKAGYEVDPVDNGLKAVEHAKKNCYDVIILDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ E ++ +T A + L+KPF L++L+ +
Sbjct: 62 ALKQIRESGDKTYILMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|21222423|ref|NP_628202.1| two component system response regulator [Streptomyces coelicolor
A3(2)]
gi|13122184|emb|CAC32360.1| putative two component system response regulator [Streptomyces
coelicolor A3(2)]
Length = 271
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A R+ ++ D+++P+MDG+
Sbjct: 46 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 105
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 106 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 162
>gi|332667187|ref|YP_004449975.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
gi|332336001|gb|AEE53102.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
Length = 1381
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ ++L YEV+ NG +K R+ ++++D++MPE+DG EL
Sbjct: 1122 VLVVEDNADIRTYIRRSLYP-DYEVIEAENGQEGLEKTRKLIPDIIISDVIMPELDGFEL 1180
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E + V+ ++ ++ + ++KPF + L + LL +
Sbjct: 1181 CRTVKQEEATAHIPVILLSARSSQMYQVEGYDTGADDYIAKPFSIDLLQARIRNLLNNR 1239
>gi|315185413|gb|EFU19185.1| response regulator receiver sensor signal transduction histidine
kinase [Spirochaeta thermophila DSM 6578]
Length = 431
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D + L L + Y V +G A ++ + PF L+L DI+MPEMDG
Sbjct: 8 KHRILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDG 66
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR D+ ++F++ A + KP+ R+L+ V L+
Sbjct: 67 FEVCRRVRNNPKTRDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLS 126
Query: 120 IK 121
++
Sbjct: 127 LR 128
>gi|228985640|ref|ZP_04145793.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228774035|gb|EEM22448.1| hypothetical protein bthur0001_23320 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ ++ + L Y V A + + + L + DI++P++
Sbjct: 1 MSDKVLIVEDEREIADLVELYLKNENYTVFKYYTAKEALECIDKNVLDLAILDIMLPDVS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + + ++ +T ++KPF +L+ V L
Sbjct: 61 GLNICQKIRDKY-NYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|84495357|ref|ZP_00994476.1| putative two component system response regulator [Janibacter sp.
HTCC2649]
gi|84384850|gb|EAQ00730.1| putative two component system response regulator [Janibacter sp.
HTCC2649]
Length = 244
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ L AL G+EV + G A RE ++ D+++P+ DG+E
Sbjct: 20 RVLVVDDESNLTELLSMALRYEGWEVRAAATGLKAVKAAREFQPDAVVLDMMLPDFDGME 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+F+T AV ++KPF L ++V + L+
Sbjct: 80 VLRRMRADNDAVPVLFLTAKDAVEDRVAGLTAGGDDYVTKPFSLEEVVARLRALMRR 136
>gi|26248609|ref|NP_754649.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
CFT073]
gi|91211514|ref|YP_541500.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
UTI89]
gi|110642430|ref|YP_670160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
536]
gi|117624414|ref|YP_853327.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
APEC O1]
gi|191170007|ref|ZP_03031561.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11]
gi|218559138|ref|YP_002392051.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
S88]
gi|218690383|ref|YP_002398595.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
ED1a]
gi|227887278|ref|ZP_04005083.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
83972]
gi|237704695|ref|ZP_04535176.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
3_2_53FAA]
gi|300936771|ref|ZP_07151664.1| response regulator receiver domain protein [Escherichia coli MS
21-1]
gi|300981267|ref|ZP_07175444.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|300983213|ref|ZP_07176490.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|301022434|ref|ZP_07186316.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
gi|301048968|ref|ZP_07195957.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|306814666|ref|ZP_07448828.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
NC101]
gi|331658300|ref|ZP_08359262.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli TA206]
gi|26109014|gb|AAN81217.1|AE016763_176 Acetoacetate metabolism Regulatory protein atoC [Escherichia coli
CFT073]
gi|91073088|gb|ABE07969.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
UTI89]
gi|110344022|gb|ABG70259.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
536]
gi|115513538|gb|ABJ01613.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli APEC O1]
gi|190909523|gb|EDV69108.1| sigma-54 dependent response regulator AtoC [Escherichia coli F11]
gi|218365907|emb|CAR03649.1| fused response regulator of ato opeon, in two-component system with
AtoS: response regulator ; sigma54 interaction protein
[Escherichia coli S88]
gi|218427947|emb|CAR08718.1| fused response regulator of ato opeon, in two-component system with
AtoS: response regulator ; sigma54 interaction protein
[Escherichia coli ED1a]
gi|222033982|emb|CAP76723.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
LF82]
gi|226901061|gb|EEH87320.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
3_2_53FAA]
gi|227835628|gb|EEJ46094.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
83972]
gi|294494076|gb|ADE92832.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
IHE3034]
gi|300299219|gb|EFJ55604.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|300307631|gb|EFJ62151.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|300397535|gb|EFJ81073.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
gi|300408614|gb|EFJ92152.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|300458101|gb|EFK21594.1| response regulator receiver domain protein [Escherichia coli MS
21-1]
gi|305852060|gb|EFM52512.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
NC101]
gi|307554287|gb|ADN47062.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
ABU 83972]
gi|307626241|gb|ADN70545.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
UM146]
gi|312946842|gb|ADR27669.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
O83:H1 str. NRG 857C]
gi|315285840|gb|EFU45280.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|315292172|gb|EFU51524.1| response regulator receiver domain protein [Escherichia coli MS
153-1]
gi|315298046|gb|EFU57315.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|323955988|gb|EGB51741.1| sigma-54 interaction domain-containing protein [Escherichia coli
H263]
gi|324006598|gb|EGB75817.1| response regulator receiver domain protein [Escherichia coli MS
57-2]
gi|324013105|gb|EGB82324.1| response regulator receiver domain protein [Escherichia coli MS
60-1]
gi|331056548|gb|EGI28557.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli TA206]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|323977582|gb|EGB72668.1| sigma-54 interaction domain-containing protein [Escherichia coli
TW10509]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPIILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|241763559|ref|ZP_04761611.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidovorax delafieldii 2AN]
gi|241367290|gb|EER61630.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidovorax delafieldii 2AN]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ NG+ + + L++ D+++P +DG +
Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118
>gi|254468934|ref|ZP_05082340.1| two component transcriptional regulator, winged helix family [beta
proteobacterium KB13]
gi|207087744|gb|EDZ65027.1| two component transcriptional regulator, winged helix family [beta
proteobacterium KB13]
Length = 237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +DD +R + + L G++ + +G +++ L++ D+++P+ +
Sbjct: 1 MKKKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDEN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ +R + ++ +T L KPF+ R+L+ +N +
Sbjct: 61 GLDICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRR 120
>gi|158520639|ref|YP_001528509.1| two component transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158509465|gb|ABW66432.1| two component transcriptional regulator, winged helix family
[Desulfococcus oleovorans Hxd3]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 1 MN----QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN ++IL+ ED+ + + L L GY+V+ NG+ + L++ DI++
Sbjct: 1 MNSPDRKQILIIEDEAHIAQGLQLNLSLKGYDVMVAENGSRGLAAWKAHNPDLIVLDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG+ + + D + ++ ++ L+KPF L + + V+R
Sbjct: 61 PGMDGLSVLQHIRLEDEKIPILILSAKKEPIDKRKGLTYGVDDYLTKPFDLEEFLLRVDR 120
Query: 117 LLTI 120
LLT
Sbjct: 121 LLTR 124
>gi|66044349|ref|YP_234190.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
gi|63255056|gb|AAY36152.1| PAS:GGDEF [Pseudomonas syringae pv. syringae B728a]
Length = 705
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + IL+ +DD +R L L GY ++ +G A V+ + L+L DI+MP
Sbjct: 1 MTESAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELALAMVKRQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKAEKGTANIPIIMLSALDDQSSRLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|49473740|ref|YP_031782.1| transcriptional regulator [Bartonella quintana str. Toulouse]
gi|49239243|emb|CAF25563.1| Transcriptional regulator [Bartonella quintana str. Toulouse]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRA 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|298483673|ref|ZP_07001848.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298270243|gb|EFI11829.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1344
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1211
>gi|237747933|ref|ZP_04578413.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
gi|229379295|gb|EEO29386.1| response regulator receiver protein [Oxalobacter formigenes OXCC13]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + ++ AG+ V+ +G A+ ++ ++L D ++P++ G+ L
Sbjct: 8 ILVVEDEPAIAELIAFSVKSAGWRPVTVFSGNDAWTALQRFRPDVVLLDWMLPDLSGLRL 67
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E L V+ +T ++KPF ++LV +N LL K
Sbjct: 68 LTRIREHREMKALPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRK 126
>gi|121593850|ref|YP_985746.1| two component heavy metal response transcriptional regulator
[Acidovorax sp. JS42]
gi|120605930|gb|ABM41670.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidovorax sp. JS42]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ NG+ + + L++ D+++P +DG +
Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRNRGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118
>gi|90962157|ref|YP_536073.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Lactobacillus salivarius UCC118]
gi|227891180|ref|ZP_04008985.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|90821351|gb|ABD99990.1| Alkaline phosphatase synthesis two-component response regulator
phoP [Lactobacillus salivarius UCC118]
gi|227867054|gb|EEJ74475.1| response regulator [Lactobacillus salivarius ATCC 11741]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + L L KAGYEV + NNG A D+ + ++ D+++P +DGIE
Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKTVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T L+KPF R++V + + +
Sbjct: 63 ITKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAV-KRR 119
>gi|316933637|ref|YP_004108619.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris DX-1]
gi|315601351|gb|ADU43886.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris DX-1]
Length = 457
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ +NG A + + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGVEALEICQRAECDIVLLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 70.2 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L ++V N + A E + LL+ + + DG+
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELMA 266
>gi|256855119|ref|ZP_05560480.1| two-component system response regulator [Enterococcus faecalis T8]
gi|300862210|ref|ZP_07108290.1| response regulator receiver domain protein [Enterococcus faecalis
TUSoD Ef11]
gi|256709632|gb|EEU24679.1| two-component system response regulator [Enterococcus faecalis T8]
gi|300848735|gb|EFK76492.1| response regulator receiver domain protein [Enterococcus faecalis
TUSoD Ef11]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD ++ L K L E + G ++ + + L++ DI+MP MD
Sbjct: 1 MKHKVLIIDDDKELCHLLQKNLSVENIEADIYHTGKEGIFALKHKEYQLVILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + L V+ +T + L+KPF + + + V+ L+
Sbjct: 61 GFQVLEKIRETNR-LPVLMLTAKSDSTSKVIGLRSGADDYLAKPFDMDEFIARVHSLIRR 119
>gi|116073301|ref|ZP_01470563.1| putative two-component system response regulator [Synechococcus sp.
RS9916]
gi|116068606|gb|EAU74358.1| putative two-component system response regulator [Synechococcus sp.
RS9916]
Length = 236
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 59/116 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +DD ++ +FL + L AG+ ++ +G A ++R++ F+L++ D +P+ +GIE+
Sbjct: 9 LLVDDDPELLQFLREELEGAGHGCIAVASGQDALLQLRQQAFALVVLDWGLPDFNGIEIC 68
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR V+ +T A+ + L+KPF L +L V L +
Sbjct: 69 RRLRSSGDTTPVLMLTAHDALDERVAALDAGADDFLTKPFELEELHARVRAQLRRQ 124
>gi|86131764|ref|ZP_01050361.1| two-component system response regulator [Dokdonia donghaensis
MED134]
gi|85817586|gb|EAQ38760.1| two-component system response regulator [Dokdonia donghaensis
MED134]
Length = 236
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y+V NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYDVTHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEEIPIIFLTAKALKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124
>gi|121601666|ref|YP_989580.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
KC583]
gi|12830428|emb|CAC29081.1| putative regulatory protein [Bartonella bacilliformis]
gi|120613843|gb|ABM44444.1| transcriptional regulatory protein BvrR [Bartonella bacilliformis
KC583]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S NG SA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTNGVSALKSLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRR 125
>gi|300867489|ref|ZP_07112140.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
gi|300334483|emb|CBN57308.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
Length = 427
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +D D RFL L + GY V NG A V+ L+L DI MP
Sbjct: 1 MTKTADILIVDDTPDNIRFLSSLLVEQGYNVRKALNGKMALTAVKAVLPDLILLDINMPG 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
M+G E+ + V+F++ V + ++KPF L +++ +
Sbjct: 61 MNGYEVCEHLKNDAKTSAVPVIFLSALDGVVDKVKAFQIGGVDYITKPFQLEEILARIQS 120
Query: 117 LLTIK 121
L IK
Sbjct: 121 QLKIK 125
>gi|237786491|ref|YP_002907196.1| two-component system response regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759403|gb|ACR18653.1| two-component system, response regulator [Corynebacterium
kroppenstedtii DSM 44385]
Length = 268
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|227824850|ref|ZP_03989682.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
gi|226905349|gb|EEH91267.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
Length = 226
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILLAED+ M + L +GY V + NGA A + ++P+ L+ DI+MP D
Sbjct: 1 MN--ILLAEDEKAMSMAISAVLTHSGYTVDTVQNGAEAVEAAAQKPYDCLIFDIMMPIKD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + +F+T + V L+KPF + +L+ + +
Sbjct: 59 GVTALSEIRQSGNETPAIFLTAKSEVDDRIMGLDAGADDYLTKPFAMGELLARIRSMTRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|197121525|ref|YP_002133476.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
gi|196171374|gb|ACG72347.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. K]
Length = 501
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 58/118 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L
Sbjct: 30 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLTL 89
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RA EL DL V+ I+G A + D+ SKP ++ V L+ ++
Sbjct: 90 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 147
>gi|89894532|ref|YP_518019.1| hypothetical protein DSY1786 [Desulfitobacterium hafniense Y51]
gi|219668964|ref|YP_002459399.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89333980|dbj|BAE83575.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539224|gb|ACL20963.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 228
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ + L GY + NG A + + E+ L++ DI+MP+MD
Sbjct: 1 MN--ILVCDDDKEIVEAIRIYLAHEGYTIHKAFNGLQALEVIEEQTVHLVIMDIMMPQMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E ++ V+ ++ + ++KPF+ +L+ V L
Sbjct: 59 GIRALMKIREER-NIPVIMLSAKSEDTDKIMGLNMGADDYITKPFNPLELIARVKSQLRR 117
>gi|323705815|ref|ZP_08117387.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534811|gb|EGB24590.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 224
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + I + +DD ++R ++K + K GY V S N + D ++ +L+ DI+MP MD
Sbjct: 1 MPELIYIVDDDKNIRDLMVKYVEKEGYTVKSFENAEAVLDNFEKDKPDMLILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + D+ ++ ++ + ++KPF R+L+ + +
Sbjct: 61 GYELCRQIRKK-SDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRR 119
>gi|317057519|ref|YP_004105986.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315449788|gb|ADU23352.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 224
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 57/116 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +RR + AL + GY+ + ++G A D + + L+++DI+MP MDG EL
Sbjct: 4 ILVVEDDASLRRLMSAALKQNGYQPFTASDGIEALDMLEKTNIDLIISDIMMPNMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + + ++ +T + + KP + +++ V LL
Sbjct: 64 TRQLRNANFQMPIIMVTAKESFEDKKIGFDAGTDDYMVKPIDINEMILRVGALLKR 119
>gi|302542579|ref|ZP_07294921.1| transcriptional regulatory protein CseB [Streptomyces hygroscopicus
ATCC 53653]
gi|302460197|gb|EFL23290.1| transcriptional regulatory protein CseB [Streptomyces
himastatinicus ATCC 53653]
Length = 246
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + + L G++V + +G +A D LL+ D+++P DG+
Sbjct: 20 RRILVVEDDPTIVDAIAARLRAEGFQVQTAADGPAAVDTAEAWQPDLLVLDVMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R++ V+ LL
Sbjct: 80 EVCRRVQARRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 136
>gi|300863556|ref|ZP_07108502.1| two-component response regulator [Oscillatoria sp. PCC 6506]
gi|300338423|emb|CBN53644.1| two-component response regulator [Oscillatoria sp. PCC 6506]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ + + + L + Y V NG A++ + + ++L + D ++P + G
Sbjct: 2 RVLLVEDEPDLGKAIKRTLNQEKYIVDWAQNGNEAWEYLESQWTQYTLAIFDWLLPGLSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL +R + L V+ +T + L KPF + +L+ + L +
Sbjct: 62 LELCQRLRAKNNHLPVLMLTARDRMEDKVAGLDAGADDYLVKPFGMAELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|294647220|ref|ZP_06724819.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|292637507|gb|EFF55926.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
Length = 1344
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1211
>gi|222099244|ref|YP_002533812.1| Response regulator [Thermotoga neapolitana DSM 4359]
gi|221571634|gb|ACM22446.1| Response regulator [Thermotoga neapolitana DSM 4359]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ D+ + +AL K + V C +G E F +++ D+++P DG E
Sbjct: 12 RVLLVEDEKDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEDFDVVILDVLLPVHDGWE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + V+ +T + V L KPF LR+L+ V L+ K
Sbjct: 72 ILKAMREKGINTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVKALIRRK 129
>gi|198276106|ref|ZP_03208637.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
gi|198270918|gb|EDY95188.1| hypothetical protein BACPLE_02294 [Bacteroides plebeius DSM 17135]
Length = 1237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 3 QKI----LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
KI L ED+DD+R + + L +++ ++G +A ++ ++ ++++DI+MP
Sbjct: 979 HKIKPALLFVEDNDDLRNVMKRILTDH-FDLTEASSGETALLQLEDKKIDIIVSDIMMPG 1037
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
M+G EL ++ E + V+ +T + + KP ++ L+ ++
Sbjct: 1038 MNGFELCKKIKERFETKHIPVILLTAKTSDMDRITGYEVGADGYICKPLNISVLLAKIEN 1097
Query: 117 LLTIK 121
LL K
Sbjct: 1098 LLKKK 1102
>gi|193215940|ref|YP_001997139.1| two component transcriptional regulator, winged helix family
[Chloroherpeton thalassium ATCC 35110]
gi|193089417|gb|ACF14692.1| two component transcriptional regulator, winged helix family
[Chloroherpeton thalassium ATCC 35110]
Length = 239
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ EDD D+ + L G + +G S + + +++ D+++P++DG+
Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + + ++ +T + S ++KPF +R+L V +
Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRR 121
>gi|126650762|ref|ZP_01722978.1| sensor histidine kinase [Bacillus sp. B14905]
gi|126592427|gb|EAZ86445.1| sensor histidine kinase [Bacillus sp. B14905]
Length = 713
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + L + V +NG + + L++ DI++P M+G
Sbjct: 487 EKILLIEDEVSIAELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGF 546
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ ++ ++F++ ++KPF +LV V L+
Sbjct: 547 EICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSR 603
>gi|291572094|dbj|BAI94366.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 378
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE
Sbjct: 3 KILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + +T AV LSKP + +L V L +
Sbjct: 63 VCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLRL 121
>gi|163855203|ref|YP_001629501.1| transcriptional regulator [Bordetella petrii DSM 12804]
gi|163258931|emb|CAP41230.1| Probable transcriptional regulator [Bordetella petrii]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + ++ LL+ D ++P DG +
Sbjct: 7 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDANDLAARIARYAPDLLVLDRMLPGGDGAD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+ +T L KPF R+L+ + +L K
Sbjct: 67 ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124
>gi|160885098|ref|ZP_02066101.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
gi|156109448|gb|EDO11193.1| hypothetical protein BACOVA_03096 [Bacteroides ovatus ATCC 8483]
Length = 1325
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1192
>gi|16130157|ref|NP_416724.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli str. K-12 substr. MG1655]
gi|89109039|ref|AP_002819.1| fused response regulator of ato opeon, in two-component system with
AtoS [Escherichia coli str. K-12 substr. W3110]
gi|157161704|ref|YP_001459022.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
HS]
gi|170081840|ref|YP_001731160.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator and sigma 54 interaction
protein [Escherichia coli str. K-12 substr. DH10B]
gi|188494177|ref|ZP_03001447.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638]
gi|238901395|ref|YP_002927191.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli BW2952]
gi|253772856|ref|YP_003035687.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162232|ref|YP_003045340.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli B
str. REL606]
gi|256022097|ref|ZP_05435962.1| acetoacetate metabolism regulatory protein AtoC [Escherichia sp.
4_1_40B]
gi|300903602|ref|ZP_07121520.1| response regulator receiver domain protein [Escherichia coli MS
84-1]
gi|300931434|ref|ZP_07146763.1| response regulator receiver domain protein [Escherichia coli MS
187-1]
gi|300948915|ref|ZP_07162977.1| response regulator receiver domain protein [Escherichia coli MS
116-1]
gi|300958905|ref|ZP_07171009.1| response regulator receiver domain protein [Escherichia coli MS
175-1]
gi|301024238|ref|ZP_07187933.1| response regulator receiver domain protein [Escherichia coli MS
196-1]
gi|301306547|ref|ZP_07212610.1| response regulator receiver domain protein [Escherichia coli MS
124-1]
gi|301647689|ref|ZP_07247483.1| response regulator receiver domain protein [Escherichia coli MS
146-1]
gi|307138879|ref|ZP_07498235.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
H736]
gi|312973526|ref|ZP_07787698.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
1827-70]
gi|331642850|ref|ZP_08343985.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli H736]
gi|1168553|sp|Q06065|ATOC_ECOLI RecName: Full=Acetoacetate metabolism regulatory protein AtoC;
AltName: Full=Ornithine decarboxylase antizyme; AltName:
Full=Ornithine/arginine decarboxylase inhibitor
gi|619917|gb|AAA60332.1| NtrC/NifA-like protein regulator [Escherichia coli]
gi|1736875|dbj|BAA16016.1| fused response regulator of ato opeon, in two-component system with
AtoS [Escherichia coli str. K12 substr. W3110]
gi|1788550|gb|AAC75280.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli str. K-12 substr. MG1655]
gi|157067384|gb|ABV06639.1| sigma-54 dependent response regulator AtoC [Escherichia coli HS]
gi|169889675|gb|ACB03382.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator and sigma 54 interaction
protein [Escherichia coli str. K-12 substr. DH10B]
gi|188489376|gb|EDU64479.1| sigma-54 dependent response regulator AtoC [Escherichia coli 53638]
gi|238861249|gb|ACR63247.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli BW2952]
gi|242377856|emb|CAQ32623.1| AtoC transcriptional activator; Az protein inhibitor of ODC
[Escherichia coli BL21(DE3)]
gi|253323900|gb|ACT28502.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974133|gb|ACT39804.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli B str. REL606]
gi|253978300|gb|ACT43970.1| fused response regulator of ato operon, in two-component system
with AtoS: response regulator/sigma54 interaction
protein [Escherichia coli BL21(DE3)]
gi|260448686|gb|ACX39108.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Escherichia coli DH1]
gi|299880501|gb|EFI88712.1| response regulator receiver domain protein [Escherichia coli MS
196-1]
gi|300314468|gb|EFJ64252.1| response regulator receiver domain protein [Escherichia coli MS
175-1]
gi|300404338|gb|EFJ87876.1| response regulator receiver domain protein [Escherichia coli MS
84-1]
gi|300451611|gb|EFK15231.1| response regulator receiver domain protein [Escherichia coli MS
116-1]
gi|300460804|gb|EFK24297.1| response regulator receiver domain protein [Escherichia coli MS
187-1]
gi|300838207|gb|EFK65967.1| response regulator receiver domain protein [Escherichia coli MS
124-1]
gi|301074219|gb|EFK89025.1| response regulator receiver domain protein [Escherichia coli MS
146-1]
gi|309702531|emb|CBJ01858.1| acetoacetate metabolism regulator (two-component system response
regulator) [Escherichia coli ETEC H10407]
gi|310332121|gb|EFP99356.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
1827-70]
gi|315136852|dbj|BAJ44011.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
DH1]
gi|315255155|gb|EFU35123.1| response regulator receiver domain protein [Escherichia coli MS
85-1]
gi|315615482|gb|EFU96114.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
3431]
gi|320199815|gb|EFW74404.1| Acetoacetate metabolism regulatory protein AtoC [Escherichia coli
EC4100B]
gi|323936835|gb|EGB33120.1| sigma-54 interaction domain-containing protein [Escherichia coli
E1520]
gi|323941085|gb|EGB37272.1| sigma-54 interaction domain-containing protein [Escherichia coli
E482]
gi|323961526|gb|EGB57134.1| sigma-54 interaction domain-containing protein [Escherichia coli
H489]
gi|323973079|gb|EGB68273.1| sigma-54 interaction domain-containing protein [Escherichia coli
TA007]
gi|331039648|gb|EGI11868.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli H736]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|332344002|gb|AEE57336.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
UMNK88]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|323952014|gb|EGB47888.1| response regulator receiver domain-containing protein [Escherichia
coli H252]
Length = 165
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|266623167|ref|ZP_06116102.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
gi|288865034|gb|EFC97332.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 48/120 (40%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L +V +G A + F L + DI++P++
Sbjct: 1 MLEKILIVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+ +T ++KPF +LV V L
Sbjct: 61 GLSICQSIRSKEYTYPVIMLTAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120
>gi|237714923|ref|ZP_04545404.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229445248|gb|EEO51039.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1344
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1211
>gi|320160069|ref|YP_004173293.1| putative two-component response regulator receiver protein
[Anaerolinea thermophila UNI-1]
gi|319993922|dbj|BAJ62693.1| putative two-component response regulator receiver protein
[Anaerolinea thermophila UNI-1]
Length = 300
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++L+ EDD D+ L GY+V + G+ A +K R+ L++ DI++P+++G
Sbjct: 3 KARLLIVEDDVDISNMLKIYFSSQGYDVETALRGSDALEKTRQNMPHLIVLDIMLPDING 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ R+ + V+F+T + ++KPF + +L V ++
Sbjct: 63 YEVCRQLRTTTRTSHIPVIFLTQKDERSDRLQGLELGADDYITKPFDIDELRLRVQNAIS 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|310780298|ref|YP_003968630.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
gi|309749621|gb|ADO84282.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
Length = 220
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+D MR+ + L KAGYEV+ +G A + E F L + D+++P++DG
Sbjct: 2 ERILLLEDEDKMRKVVKNFLVKAGYEVIEACDGEEALELFYENTFDLAILDVMVPKIDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + ++ +T + + ++KPF L+ L+ V LL K+
Sbjct: 62 TICRKIRKE-SKIPIIMLTARSTEDDELFGFDLGADEYITKPFSLKILLARVKVLLKRKD 120
>gi|325681332|ref|ZP_08160858.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
gi|324106822|gb|EGC01112.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
Length = 234
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
+K+L+ ED+D +R F++ L ++GYEVV N G A E F + L DI+MP +D
Sbjct: 2 KKVLVCEDEDSIREFVVINLVRSGYEVVDVNCGEDALKAYEENEGAFDVALLDIMMPGID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ E + + ++ ++ + ++KPF + +L+ V+ +
Sbjct: 62 GMQVCKKIREKNSGMGIIMLSAKSQEMDKISCLMSGADDYITKPFSISELIARVDAVCRR 121
Query: 121 KN 122
N
Sbjct: 122 VN 123
>gi|320010070|gb|ADW04920.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G + R + + L D+++P +
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERVGFTVTAVPDGLEGLEAFRADRPDIALLDVMVPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADAIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|255324956|ref|ZP_05366064.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
gi|255298016|gb|EET77325.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
Length = 279
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 53 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAMDEARRFSPDVVVLDLGLPELDGLE 112
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 113 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 168
>gi|228934470|ref|ZP_04097305.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228825107|gb|EEM70904.1| Two-component response regulator [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
Length = 226
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + + +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTPALLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|146341429|ref|YP_001206477.1| response regulator PleD [Bradyrhizobium sp. ORS278]
gi|146194235|emb|CAL78257.1| response regulator PleD (with diguanylate cyclase and response
regulator receiver domains) [Bradyrhizobium sp. ORS278]
Length = 473
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ +NGA A + ++L D++MP+MD
Sbjct: 1 MSARILVVDDVPANVKLLEARLSAEYFDVLTASNGAEALQICQRAECDIILLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L+ V L
Sbjct: 61 GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 5/121 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + V + A A + + L++ + + + DG+
Sbjct: 157 RILLVDDRPSSYERLGPMLATE-HSVDVEPHPAEAVFNAADGNYDLVIVSLDLDDFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ I A L +P +L+ +
Sbjct: 216 LCSQLRSLERTRHVPILAI-AEAENNSRLLRGLEIGVNDYLLRPVDKNELLARARTQIRK 274
Query: 121 K 121
+
Sbjct: 275 R 275
>gi|156740441|ref|YP_001430570.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156231769|gb|ABU56552.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 245
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+A+DD + + L YE+V+ NG A E F +++ D++MP +DG
Sbjct: 19 RRILIADDDPSIGTLIQVTLKDPRYEIVAVKNGLEALKAFDESKFDVVILDVMMPYVDGF 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R E D+ ++ +T ++KPF +L+ V+ +L
Sbjct: 79 EACQRIRER-SDVPIIILTARDGTDDIVHGFELGADDYITKPFKTAELIARVDAILRR 135
>gi|39995119|ref|NP_951070.1| sensory box histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
gi|39981881|gb|AAR33343.1| sensory box histidine kinase/response regulator [Geobacter
sulfurreducens PCA]
gi|298504149|gb|ADI82872.1| response receiver sensor histidine kinase, PAS domain-containing
[Geobacter sulfurreducens KN400]
Length = 516
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ K+ + +D+ D+ L L AGY + +G A D + E F L+L DI MP M
Sbjct: 1 MSGYKVFIVDDEADIALILKLQLEDAGYRTMRARDGIEALDALERESFDLVLLDIRMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R + PDL V+ +T + + ++ +SKPF D+ V R +
Sbjct: 61 DGIEVLERIRDRWPDLVVIMMTAHGSEDIAVEAMKKGAVDYISKPFSSDDMKKRVERAI 119
>gi|30260728|ref|NP_843105.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47525845|ref|YP_017194.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183566|ref|YP_026818.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|165871773|ref|ZP_02216417.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167635679|ref|ZP_02393990.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167640647|ref|ZP_02398908.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170688512|ref|ZP_02879719.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|170708249|ref|ZP_02898695.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177653779|ref|ZP_02935880.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190568234|ref|ZP_03021143.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|196035780|ref|ZP_03103183.1| DNA-binding response regulator [Bacillus cereus W]
gi|196041341|ref|ZP_03108635.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|227816558|ref|YP_002816567.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229600912|ref|YP_002865173.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254684351|ref|ZP_05148211.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|254722153|ref|ZP_05183942.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254738815|ref|ZP_05196518.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254743799|ref|ZP_05201483.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254755039|ref|ZP_05207073.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254762227|ref|ZP_05214071.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30254096|gb|AAP24591.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47500993|gb|AAT29669.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177493|gb|AAT52869.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164712498|gb|EDR18031.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167511362|gb|EDR86747.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167528938|gb|EDR91694.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170126905|gb|EDS95786.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|170667537|gb|EDT18293.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|172081171|gb|EDT66247.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190560726|gb|EDV14702.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|195991747|gb|EDX55712.1| DNA-binding response regulator [Bacillus cereus W]
gi|196027826|gb|EDX66439.1| DNA-binding response regulator [Bacillus cereus NVH0597-99]
gi|227006713|gb|ACP16456.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229265320|gb|ACQ46957.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 223
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D++MPEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMMPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|88802781|ref|ZP_01118308.1| two-component system, transcriptional regulatory protein
[Polaribacter irgensii 23-P]
gi|88781639|gb|EAR12817.1| two-component system, transcriptional regulatory protein
[Polaribacter irgensii 23-P]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 50/120 (41%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KILL EDD + L L Y V +G + + L + D++MP DG
Sbjct: 3 SKKILLVEDDPNFGTVLKDYLALNDYNVTHAKDGIEGLIMFKNSDYDLCILDVMMPRKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA + ++ ++F+T A L+KPF L+ ++ +L K
Sbjct: 63 FSLAEDIRATNKEIPIIFLTAKTLKEDVLKGYAVGADDYLNKPFDSEVLLYKIKAILQRK 122
>gi|313201066|ref|YP_004039724.1| winged helix family two component transcriptional regulator
[Methylovorus sp. MP688]
gi|312440382|gb|ADQ84488.1| two component transcriptional regulator, winged helix family
[Methylovorus sp. MP688]
Length = 234
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+LL +DD ++ L + L + G++ +G S ++ + + L+L D++MP+M+
Sbjct: 8 MN-KVLLIDDDVELVGMLKEYLEQEGFDPTVAYDGESGAEQALRDTYDLILLDVMMPKMN 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + V+ +T A + KP R++V V +L
Sbjct: 67 GIDALRAIRAE-KNTPVLMLTAKGEDADRIVGLELGADDYVPKPCTPREIVARVRAILRR 125
>gi|309792219|ref|ZP_07686691.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308225760|gb|EFO79516.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 226
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD + L +AGY V+ + S V + L+L D++MP+ +G ++
Sbjct: 3 ILVADDDIPSVKLTSFVLEEAGYRVLKVYDAQSVLQAVDQHNPDLILLDVMMPKSNGFDI 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ + D+ ++F++G + + L KP+ +L+ V +L +N
Sbjct: 63 CRQIR-RNSDVPIIFLSGRSQLQDRVMGLQIGGDDYLVKPYEPSELLARVEAVLRRRN 119
>gi|307298631|ref|ZP_07578434.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306915796|gb|EFN46180.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 215
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ EDD + + L LG GYEV +G A + +E LL+ D+++P +DG +
Sbjct: 1 MVVEDDMHIGKLLRLELGHEGYEVEVLTDGKEALKHLEKELPDLLILDVMLPGLDGFSVL 60
Query: 66 RRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E + DL V+ +T V L KPF + +L+ + +L K
Sbjct: 61 EEIREYISTDLPVIMLTAKGEVKDRIRGLKSGADDYLPKPFVIEELLARIEAVLRRK 117
>gi|300697830|ref|YP_003748491.1| OmpR family transcriptional regulator [Ralstonia solanacearum
CFBP2957]
gi|299074554|emb|CBJ54105.1| Transcriptional regulatory protein ompR [Ralstonia solanacearum
CFBP2957]
Length = 245
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG
Sbjct: 3 STKILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D+ V+ +T + L KPF R+L+ +N +L +
Sbjct: 63 LSALRDLRARNDDMPVILLTARSDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|289555184|ref|ZP_06444394.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis KZN 605]
gi|289439816|gb|EFD22309.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis KZN 605]
Length = 263
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V ++G A K + +L+ DI++P++DG+E
Sbjct: 39 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR E D +F+T +V ++KPF L +LV + LL +
Sbjct: 99 ILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 157
>gi|242373720|ref|ZP_04819294.1| response regulator [Staphylococcus epidermidis M23864:W1]
gi|242348688|gb|EES40290.1| response regulator [Staphylococcus epidermidis M23864:W1]
Length = 219
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RF+ L Y V N+G + DK + + L++ D+++P ++G+E+
Sbjct: 4 ILIVEDEQNLARFIELELTHENYNVDIENDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ IT + KPF + +L+ + +L +
Sbjct: 64 CRQIRQEYS-TPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ 119
>gi|170767484|ref|ZP_02901937.1| sigma-54 dependent response regulator AtoC [Escherichia albertii
TW07627]
gi|170123818|gb|EDS92749.1| sigma-54 dependent response regulator AtoC [Escherichia albertii
TW07627]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGHTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRIPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|167035004|ref|YP_001670235.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166861492|gb|ABY99899.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 225
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V +C++G SA + E + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLGSWLTQEGFTVRACHDGQSARRALAEHAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ +L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|146311032|ref|YP_001176106.1| two component transcriptional regulator [Enterobacter sp. 638]
gi|145317908|gb|ABP60055.1| two component transcriptional regulator, winged helix family
[Enterobacter sp. 638]
Length = 238
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL EDD D+ L L GY + +GA A + + + ++ D+++P +DG+
Sbjct: 5 KQILLVEDDGDIASLLRLHLEDEGYVITHEVDGAKALLLLEQAQWDAVILDLMLPHVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR +L L ++ I+ ++ L+KPF +++L+ + L +
Sbjct: 65 EICRRIRQLTRYLPIIIISARSSETDRITGLETGADDYLAKPFSVQELIARIKALFRRQ 123
>gi|187919315|ref|YP_001888346.1| two component winged helix family transcriptional regulator
[Burkholderia phytofirmans PsJN]
gi|187717753|gb|ACD18976.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
Length = 246
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L L K G V NG + + L++ D++MP DG+
Sbjct: 6 HVLIVDDDRGIRELLAGYLEKNGMRVSLAANGRQMRAALEQGAPDLIVLDLMMPGEDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T A L KPF +R+L+ + +L
Sbjct: 66 LCRELRAGKFRAVPVLMLTARNEEADRIVGLEMGADDYLPKPFAVRELLARIRAVLRR 123
>gi|115376893|ref|ZP_01464114.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115366072|gb|EAU65086.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 986
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+D+ DMR ++ + L + V + +G A L+L+D++MP MDG
Sbjct: 617 HILLADDNADMRDYVRRLLESR-FTVETVADGTEALRAAEARLPDLVLSDVMMPGMDGFA 675
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ A L KPF R+L+ V +L +
Sbjct: 676 LLREFRAKPRTAAVPFILLSARAGEEATVGGLQAGADDYLVKPFSARELLARVEGVLRL 734
>gi|39996595|ref|NP_952546.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|39983476|gb|AAR34869.1| sigma-54 dependent DNA-binding response regulator [Geobacter
sulfurreducens PCA]
gi|298505611|gb|ADI84334.1| sigma-54-dependent transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 458
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ MR FL L + GY V + A + + + L+++D+ MP +D
Sbjct: 1 MEIHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACLERKTYDLVISDVKMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L R E+ PD V+ +T F+ ++ ++KPF + ++ L
Sbjct: 61 GITLLGRIKEMTPDTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVEEVKILARNALEK 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|15836991|ref|NP_297679.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
gi|28199554|ref|NP_779868.1| two-component system, regulatory protein [Xylella fastidiosa
Temecula1]
gi|71274658|ref|ZP_00650946.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Dixon]
gi|71899630|ref|ZP_00681784.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|71901814|ref|ZP_00683880.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|170730925|ref|YP_001776358.1| response regulator receiver protein [Xylella fastidiosa M12]
gi|182682290|ref|YP_001830450.1| two component transcriptional regulator [Xylella fastidiosa M23]
gi|9105223|gb|AAF83199.1|AE003890_8 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
gi|28057669|gb|AAO29517.1| two-component system, regulatory protein [Xylella fastidiosa
Temecula1]
gi|71164390|gb|EAO14104.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Dixon]
gi|71728413|gb|EAO30578.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|71730582|gb|EAO32659.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|167965718|gb|ACA12728.1| response regulator receiver protein [Xylella fastidiosa M12]
gi|182632400|gb|ACB93176.1| two component transcriptional regulator, winged helix family
[Xylella fastidiosa M23]
gi|307578567|gb|ADN62536.1| two component transcriptional regulator [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G++
Sbjct: 2 RILLVEDEAPLRETLAARLKREGFAVDAAQDGEEGIYMGREVPFDVGIIDLGLPKMSGMD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LVKALRDEGKKFPVLILTARSSWQSKVEGLKQGADDYLVKPFHVEELLARVNALLRR 118
>gi|294775037|ref|ZP_06740566.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|294451081|gb|EFG19552.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + + +G K E+ +L+ D++MP M
Sbjct: 1 MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ RR + D V+F+T +A+ L KPF +++L+ + L+
Sbjct: 61 DGFEMVRRIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119
>gi|294776315|ref|ZP_06741797.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|294449832|gb|EFG18350.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
Length = 1329
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL L + V+ +T + K L KPF++ L + +LT
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189
Query: 121 K 121
+
Sbjct: 1190 R 1190
>gi|254885151|ref|ZP_05257861.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|319641338|ref|ZP_07996033.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|254837944|gb|EET18253.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317387019|gb|EFV67903.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1329
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL L + V+ +T + K L KPF++ L + +LT
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189
Query: 121 K 121
+
Sbjct: 1190 R 1190
>gi|150006322|ref|YP_001301066.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149934746|gb|ABR41444.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1329
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED DD+R +L L +A Y+V +C NG A + E L+L+DI+MPEM G
Sbjct: 1071 QRILVVEDHDDLREYLSHTLSEA-YQVETCTNGKEALKIIPEFKPDLVLSDIMMPEMRGD 1129
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL L + V+ +T + K L KPF++ L + +LT
Sbjct: 1130 ELCSAIKNNILTSHIPVILLTALNDEKNIVEGLETGADKYLIKPFNIGILKASIANILTN 1189
Query: 121 K 121
+
Sbjct: 1190 R 1190
>gi|150396149|ref|YP_001326616.1| response regulator PleD [Sinorhizobium medicae WSM419]
gi|150027664|gb|ABR59781.1| response regulator receiver modulated diguanylate cyclase
[Sinorhizobium medicae WSM419]
Length = 455
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L +EV++ +G +A + L+L DI+MP MD
Sbjct: 1 MTARILVVDDVPANVKLLEARLVAEYFEVLTAADGHAALAICEQTSVDLVLLDIMMPHMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ IT + L+KP + L++ V L+
Sbjct: 61 GFEVCERLKASSRTAHIPVVMITALDQPSDRVRGLKAGADDFLTKPVNDLQLMSRVKSLV 120
Query: 119 TIKN 122
+KN
Sbjct: 121 RLKN 124
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + L +AL +V ++ +A + E F L++ + + D + L
Sbjct: 156 VLLVDGRASSQERLTRALRPI-ADVAVLSDAQAALFEAAENSFDLVIVNANFDDYDPLRL 214
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + ++ +T + + + +P +LV + K+
Sbjct: 215 CSQLRSLERTRFIPILLVTEQGNDEMIVRALELGVTDYIMRPVDPNELVARSLTQIRRKH 274
>gi|5759261|gb|AAD51056.1|AF175293_1 response regulator [Enterococcus faecium]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ +LV V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLELVARVKAQLR 117
>gi|312795607|ref|YP_004028529.1| phosphate regulon transcriptional regulatory protein phoB
[Burkholderia rhizoxinica HKI 454]
gi|312167382|emb|CBW74385.1| Phosphate regulon transcriptional regulatory protein phoB
[Burkholderia rhizoxinica HKI 454]
Length = 256
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 24 MPSSILVIEDEPAISELIAVNLQHAGHCPIRAYNAEQAQRLISDVLPDLVLLDWMLPGKS 83
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 84 GVAFARELRSNERTKHIPIIMLTARGEEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 143
Query: 119 TIK 121
+
Sbjct: 144 RRR 146
>gi|310820597|ref|YP_003952955.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309393669|gb|ADO71128.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 971
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++R F++ L + Y V+ NG + + L+++D++MP M G++
Sbjct: 594 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 652
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D+ V+ +T VA + + KPF R+L+ + L ++
Sbjct: 653 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRLR 712
Query: 122 N 122
+
Sbjct: 713 D 713
>gi|310287286|ref|YP_003938544.1| Two-component response regulator [Bifidobacterium bifidum S17]
gi|311064134|ref|YP_003970859.1| two-component response regulator [Bifidobacterium bifidum PRL2010]
gi|313139990|ref|ZP_07802183.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
gi|309251222|gb|ADO52970.1| Two-component response regulator [Bifidobacterium bifidum S17]
gi|310866453|gb|ADP35822.1| Two-component response regulator [Bifidobacterium bifidum PRL2010]
gi|313132500|gb|EFR50117.1| response regulator [Bifidobacterium bifidum NCIMB 41171]
Length = 239
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ + + + + G+ ++GASA ++ L++ DI++P MDG+
Sbjct: 12 RTILVVEDEPTLATAIAQRITAEGWSARVASDGASAVQAAKQLRPDLVIMDIMLPVMDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A A ++KPF +R+L+ LL
Sbjct: 72 EATKRIVADRP-VPVLILTARDAEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 128
>gi|299538648|ref|ZP_07051931.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
gi|298726235|gb|EFI66827.1| putative sensory transduction protein [Lysinibacillus fusiformis
ZC1]
Length = 225
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD +R + L G EV+ +G A K+ E +++ DI+MP MD
Sbjct: 1 MT-KLLVVDDDAHIRELVKVFLQNEGLEVIEAIDGVDALSKLDTEKIDMVVMDIMMPNMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + DL ++ +T + L KPF +L+ V +L
Sbjct: 60 GWALCEEIRSFNTDLPILMLTAKGETSQKIKGFHLGTDDYLVKPFEPAELIVRVKSILKR 119
>gi|269103945|ref|ZP_06156642.1| transcriptional regulatory protein CpxR [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163843|gb|EEZ42339.1| transcriptional regulatory protein CpxR [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +DD ++ L L G+EV NNG +K+ L+L D++MP+M+G E
Sbjct: 3 KVLLVDDDTELTALLHDILEMEGFEVEQANNGEQGLEKINA-SIDLVLLDVMMPKMNGTE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+ +T L KPF R+L+ + +L
Sbjct: 62 MLRRLREKYS-TPVLMLTAKGDEIDRVLGLELGADDYLPKPFSDRELLARMRAILRR 117
>gi|262406809|ref|ZP_06083358.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|262355512|gb|EEZ04603.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 1325
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1074 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1132
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1133 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1192
>gi|167757351|ref|ZP_02429478.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
gi|237735574|ref|ZP_04566055.1| two-component system transcriptional regulator [Mollicutes
bacterium D7]
gi|167703526|gb|EDS18105.1| hypothetical protein CLORAM_02901 [Clostridium ramosum DSM 1402]
gi|229381319|gb|EEO31410.1| two-component system transcriptional regulator [Coprobacillus sp.
D7]
Length = 236
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R + L GY V+ +NG + L + DI+MP MD
Sbjct: 1 MEHTILIVEDEKGIRETVTVFLKNQGYNVLQASNGEEGLALIEANEIHLAVVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+F++ + ++KPF +L+ VN L
Sbjct: 61 GITMVLKLRENY-DFPVIFLSAKSEDIDKITGLNIGGDDYITKPFEAMELIARVNSNLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|149181603|ref|ZP_01860097.1| YclJ [Bacillus sp. SG-1]
gi|148850717|gb|EDL64873.1| YclJ [Bacillus sp. SG-1]
Length = 243
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 54/119 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ ED++ + L K G + ++GA Y + +E + L++ D ++P MDG
Sbjct: 9 SMKVLVVEDNESVTSMLEMFFIKEGIQGEFVHDGAEGYQRYKEGEWDLVILDWMLPGMDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + R+ E + ++ +T + + ++KPF L+ + +
Sbjct: 69 VTICRKIREERTQIPIIMLTAKDSESDQVLGLELGADDYVTKPFSPLALMARIRAVTRR 127
>gi|124003241|ref|ZP_01688091.1| RprY [Microscilla marina ATCC 23134]
gi|123991339|gb|EAY30770.1| RprY [Microscilla marina ATCC 23134]
Length = 236
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L L ++V C +G + ++ + + L D++MP+ DG
Sbjct: 8 RVLLVEDDLNLGNLLQDYLEMENFDVHLCRDGEAGFEAFEAGTYDICLLDVMMPKKDGFT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA++ E + + ++F+T + + ++KPF +LV ++ +L
Sbjct: 68 LAKQIKEKNQAVPILFLTAKSLKEDKINGFTIGADDYITKPFDEEELVLRIHAVLKR 124
>gi|315304164|ref|ZP_07874543.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
gi|313627471|gb|EFR96225.1| response regulator SaeR [Listeria ivanovii FSL F6-596]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D++ + + L K G+ V++ NNG A + E LL+ DI+MP+MDG
Sbjct: 3 TILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L EL+ D ++++ +SKPF R+LV V +L
Sbjct: 63 LVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119
>gi|289643785|ref|ZP_06475893.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289506391|gb|EFD27382.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 242
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D++ + ++ AL G++V + ++G +A +V P LL+ D+++P++DG
Sbjct: 19 KVLVVDDEEAITDLVVMALRYEGFDVHAVHSGQAALTRVALSPPDLLVLDVMLPDIDGFM 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + +F+T A ++KPF + +LV V +L
Sbjct: 79 LCQRLRGSGRGMPTLFLTARDATEDKVHGLTLGGDDYVTKPFAVSELVARVRAILRR 135
>gi|229824516|ref|ZP_04450585.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
gi|229786117|gb|EEP22231.1| hypothetical protein GCWU000282_01839 [Catonella morbi ATCC 51271]
Length = 237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + R ++ AL GY+V +G A ++ + L++ DI+MP DGIE
Sbjct: 2 RILLAEDEQQLARVVMTALAHEGYQVDWAKDGQQAVQLAQQTVYDLMILDIMMPVKDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ V+ +T A V L+KPF L++L+ + ++ +
Sbjct: 62 ALKEIRASGHTNHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|163753369|ref|ZP_02160493.1| two-component response regulator [Kordia algicida OT-1]
gi|161327101|gb|EDP98426.1| two-component response regulator [Kordia algicida OT-1]
Length = 227
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY + + +NG A K ++ L++ D++MP
Sbjct: 1 MKKKDIKILLVDDEPDILEIVGYNLSSEGYNLTTASNGVEAIAKAKKIKPHLIIMDVMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + + + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACENIRKDSSLANTIITFLTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|156603224|ref|XP_001618796.1| hypothetical protein NEMVEDRAFT_v1g66793 [Nematostella vectensis]
gi|156200390|gb|EDO26696.1| predicted protein [Nematostella vectensis]
Length = 188
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 50/120 (41%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KILL EDD + L L Y + +G + + F L + D++MP DG
Sbjct: 3 SKKILLVEDDPNFGTILKDYLALHDYNITHAKDGIEGLIEFKNNDFDLCILDVMMPRKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA + ++ ++F+T L+KPF L+ ++ +L K
Sbjct: 63 FSLAADIRATNKEIPIIFLTAKTMKEDVLKGYQAGADDYLNKPFDSEVLLFKIKAILQRK 122
>gi|154253256|ref|YP_001414080.1| response regulator receiver modulated diguanylate cyclase
[Parvibaculum lavamentivorans DS-1]
gi|154157206|gb|ABS64423.1| response regulator receiver modulated diguanylate cyclase
[Parvibaculum lavamentivorans DS-1]
Length = 457
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + L L ++V +G A + +E+ ++L D++MP MD
Sbjct: 1 MTARVLIVDDVPANLKLLDAKLTAEYFDVFKAASGPEALEAAKEQQPDIILLDVMMPGMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + + V+ +T L+KP + L V L+
Sbjct: 61 GFEVCRRLKAMPETEHIPVVMVTALDQPKDRVQGLEAGADDFLTKPLNDLALFARVRSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 20/125 (16%), Positives = 37/125 (29%), Gaps = 5/125 (4%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +IL +D + + + L + V F L + + + E
Sbjct: 152 MTEPGRILAIDDRPTSLKRITETLASE-HNVTVAETQEELLQLANSGNFDLHIVSLTLQE 210
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
DG+ L + E ++ I + L +P +LV
Sbjct: 211 FDGLRLCSQLRSLEATRQTPILAIVEEGDTGRLVRALDMGVNDYLVRPVERNELVARARS 270
Query: 117 LLTIK 121
L K
Sbjct: 271 QLRRK 275
>gi|15598388|ref|NP_251882.1| two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
gi|107102722|ref|ZP_01366640.1| hypothetical protein PaerPA_01003788 [Pseudomonas aeruginosa PACS2]
gi|116051181|ref|YP_789988.1| two-component response regulator GltR [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218890616|ref|YP_002439480.1| two-component response regulator GltR [Pseudomonas aeruginosa
LESB58]
gi|254236153|ref|ZP_04929476.1| two-component response regulator GltR [Pseudomonas aeruginosa
C3719]
gi|254241879|ref|ZP_04935201.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
gi|296388322|ref|ZP_06877797.1| two-component response regulator GltR [Pseudomonas aeruginosa PAb1]
gi|313108507|ref|ZP_07794508.1| two-component response regulator GltR [Pseudomonas aeruginosa
39016]
gi|9949311|gb|AAG06580.1|AE004743_3 two-component response regulator GltR [Pseudomonas aeruginosa PAO1]
gi|1621045|gb|AAC44475.1| GltR [Pseudomonas aeruginosa PAO1]
gi|115586402|gb|ABJ12417.1| two-component response regulator GltR [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126168084|gb|EAZ53595.1| two-component response regulator GltR [Pseudomonas aeruginosa
C3719]
gi|126195257|gb|EAZ59320.1| two-component response regulator GltR [Pseudomonas aeruginosa 2192]
gi|218770839|emb|CAW26604.1| two-component response regulator GltR [Pseudomonas aeruginosa
LESB58]
gi|310881010|gb|EFQ39604.1| two-component response regulator GltR [Pseudomonas aeruginosa
39016]
Length = 242
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++R L L +AG++V S + GA + EE SL + D+++P+ DG L
Sbjct: 8 ILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEASLAILDVMLPDEDGFSL 67
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T + A L KPF R+L+ + LL
Sbjct: 68 CRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125
>gi|312875838|ref|ZP_07735828.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
gi|311797319|gb|EFR13658.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor lactoaceticus 6A]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KSILIVDDEQHILELLKFNLRKEGYNTFEADSGVLALEILKHNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNRDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|295093355|emb|CBK82446.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus sp.
ART55/1]
Length = 228
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + L L Y V + NG AYD + + ++ D++MP+MDG
Sbjct: 2 RLLLAEDEKALSSALQVILKHNNYSVDAVYNGQDAYDYIMAGVYDGVILDVMMPKMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ V+ +T A + L+KPF ++L+ + + K+
Sbjct: 62 VLSKIRAEGCDVPVIMLTAKAETDDKINGLDLGADDYLAKPFETKELLARIRAITRRKS 120
>gi|293368763|ref|ZP_06615367.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292636068|gb|EFF54556.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1343
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + Y+V + +G ++ ++++DI+MP M G+E
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1210
>gi|291523773|emb|CBK89360.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
gi|291528762|emb|CBK94348.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + L +G+EV N+G S + E F L + D+++P +D
Sbjct: 1 MS-RILIVEDEVAIADLEKDYLELSGFEVEVENDGTSGLARALAEDFDLFILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKQIREK-KNTPILMVSAKKDDIDKIRGLGLGADDYVTKPFSPSELVARVKAHLAR 118
>gi|188590123|ref|YP_001920314.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum E3 str. Alaska E43]
gi|251780101|ref|ZP_04823021.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum E1 str. 'BoNT E Beluga']
gi|188500404|gb|ACD53540.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum E3 str. Alaska E43]
gi|243084416|gb|EES50306.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
botulinum E1 str. 'BoNT E Beluga']
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ EDD +R + L Y+ NG +A + +++ D+ +P+M
Sbjct: 1 MNKPQILVVEDDKAVRNLITITLETENYKYHVAENGEAAIREAVSYVPDIVILDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ ++ ++ ++ ++ + ++ L+KPF + +L+ + L
Sbjct: 61 DGIEIIKKIR-TWSNIPIIVVSARSEDRDKIEALDCGADDYLTKPFSVEELLARLRVSLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|150009079|ref|YP_001303822.1| two-component response regulator [Parabacteroides distasonis ATCC
8503]
gi|255015700|ref|ZP_05287826.1| two-component response regulator [Bacteroides sp. 2_1_7]
gi|256841639|ref|ZP_05547145.1| two-component system response regulator [Parabacteroides sp. D13]
gi|262383979|ref|ZP_06077115.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298377166|ref|ZP_06987120.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_19]
gi|301310857|ref|ZP_07216786.1| DNA-binding response regulator RprY [Bacteroides sp. 20_3]
gi|149937503|gb|ABR44200.1| two-component response regulator [Parabacteroides distasonis ATCC
8503]
gi|256736533|gb|EEU49861.1| two-component system response regulator [Parabacteroides sp. D13]
gi|262294877|gb|EEY82809.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298266150|gb|EFI07809.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_19]
gi|300830920|gb|EFK61561.1| DNA-binding response regulator RprY [Bacteroides sp. 20_3]
Length = 243
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI EDD+++ L + L GY ++G + Y + + L + D++MP+ DG
Sbjct: 6 KIFFCEDDENLGMLLREYLQAKGYVTDLFSDGEAGYKGFTKGKYDLCVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ ++PD+ ++F+T + L+KPF + +L+ + +L
Sbjct: 66 LAQEIRSINPDIPIIFLTAKTMKEDILEGFKIGADDYLTKPFSMEELLLRIEAILRR 122
>gi|119503823|ref|ZP_01625905.1| two-component response regulator PhoB [marine gamma proteobacterium
HTCC2080]
gi|119460331|gb|EAW41424.1| two-component response regulator PhoB [marine gamma proteobacterium
HTCC2080]
Length = 234
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ D+R L AL G+EV+ + AY + ++ L+L D ++P GI
Sbjct: 2 KKILVVDDEPDLRDMLRFALETEGFEVLEAADTQKAYWLITDQDPDLVLLDWMLPGGSGI 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R E L V+ +T A ++KPF L++L+ + +
Sbjct: 62 ELLSRLKKEEATQSLPVIMVTAKAREEDIIQGLDMGAHDYITKPFSLKELLARIRTIFR 120
>gi|51894424|ref|YP_077115.1| two-component response regulator, CheY-like [Symbiobacterium
thermophilum IAM 14863]
gi|51858113|dbj|BAD42271.1| two-component response regulator, CheY-like [Symbiobacterium
thermophilum IAM 14863]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ MR + L V+ +G +A VR+ L+L D++MP +DG +
Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T VA ++KPF R+L V +L
Sbjct: 68 LQRIREE-SAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRR 122
>gi|26986989|ref|NP_742414.1| osmolarity response regulator [Pseudomonas putida KT2440]
gi|148545517|ref|YP_001265619.1| osmolarity response regulator [Pseudomonas putida F1]
gi|24981604|gb|AAN65878.1|AE016215_13 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
gi|148509575|gb|ABQ76435.1| Two-component response regulator OmpR [Pseudomonas putida F1]
Length = 246
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L + GY + N ++ E F+L++ D+++P DG+
Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + + ++ +T L KPF+ +L+ V +L +
Sbjct: 72 ACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129
>gi|301060701|ref|ZP_07201516.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
gi|300445098|gb|EFK09048.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [delta
proteobacterium NaphS2]
Length = 545
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61
+IL+AED+ ++ + L K G++V NG A DK++E E F L+L DI MP DG
Sbjct: 423 RILIAEDNKVNQKLIKMMLTKEGFQVDIAANGQEAVDKLQESPENFDLVLMDIQMPVKDG 482
Query: 62 IELARRATELD-PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + E +L ++ IT A A ++KP ++++ + R +T
Sbjct: 483 FEATKAIREAGFHNLPIIAITAHALKGYREKCLASGMDDYVTKPIKKNEVISAIERQMTR 542
Query: 121 KN 122
N
Sbjct: 543 AN 544
>gi|224535689|ref|ZP_03676228.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522699|gb|EEF91804.1| hypothetical protein BACCELL_00553 [Bacteroides cellulosilyticus
DSM 14838]
Length = 1113
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++IL+ ED+DD+R +L+ L Y V SC+NG A + + E L+L+DI+MPEM G
Sbjct: 843 SRRILIVEDNDDLRIYLVNTL-GEDYLVQSCHNGKEALEILSEFKPDLVLSDIMMPEMSG 901
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + V+ +T + ++KPF + L +NRL+T
Sbjct: 902 DELCAAIKGNIETSHIPVLLLTALGDEKNMLEGLKIGADDYMAKPFSISILKASINRLIT 961
Query: 120 IK 121
+
Sbjct: 962 NR 963
>gi|28868489|ref|NP_791108.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213968377|ref|ZP_03396521.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato T1]
gi|301384643|ref|ZP_07233061.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato Max13]
gi|302058904|ref|ZP_07250445.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato K40]
gi|302133017|ref|ZP_07259007.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28851727|gb|AAO54803.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927015|gb|EEB60566.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tomato T1]
gi|331015226|gb|EGH95282.1| sensory box protein/response regulator [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 705
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GYE ++ +G A V L+L DI+MP
Sbjct: 1 MTQPAATILIVDDDVHVRDLLEVLLQNQGYETLTAESGEQALAMVDARAPDLILLDIMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + LSKP +L V
Sbjct: 61 GMDGYEVASVLKAGKGTANIPIIMLSALDEQGARLSGLEAGAEEYLSKPVESAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|320107312|ref|YP_004182902.1| winged helix family two component transcriptional regulator
[Terriglobus saanensis SP1PR4]
gi|319925833|gb|ADV82908.1| two component transcriptional regulator, winged helix family
[Terriglobus saanensis SP1PR4]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD M++ L + + GY V C +G S D R +S ++ D+V+P + G ++
Sbjct: 14 ILVVEDDPRMQKILQRVFREQGYHVTVCGDGQSGLDAFRAGRYSAVVLDLVLPNIFGRDV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+ ++ VA ++KPF R+L+ V + +
Sbjct: 74 CKTIKSEQEDMPVIVVSAITDVADKVLLLELGADDYVTKPFSPRELMARVQAAMRRR 130
>gi|302669412|ref|YP_003829372.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302393885|gb|ADL32790.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L + +EV N G + + E F L++ D+++P MD
Sbjct: 1 MS-RILIVEDEEAIADLEKDYLELSDFEVKIENTGDAGLETALAEEFDLIILDLMLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ ++ ++ ++KPF +LV V +
Sbjct: 60 GFEVCKHIREK-KDVPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHMAR 118
>gi|288799669|ref|ZP_06405128.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 299
str. F0039]
gi|288332917|gb|EFC71396.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 299
str. F0039]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L GY C +G + Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYAATLCPDGEAGYKEFLKNKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + D+ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQSNADMPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|269140696|ref|YP_003297397.1| two-component response regulator [Edwardsiella tarda EIB202]
gi|267986357|gb|ACY86186.1| two-component response regulator [Edwardsiella tarda EIB202]
gi|304560480|gb|ADM43144.1| Two-component response regulator [Edwardsiella tarda FL6-60]
Length = 242
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++IL+ EDD + L L GY+V +G V + + L+ D+++P +
Sbjct: 6 MTGKRILVVEDDTLIAELLTLHLCDEGYQVTHAADGDRGMALVEQGGWDALILDLMLPGV 65
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ RR + ++ + ++ L+KPF + +LV V L
Sbjct: 66 DGLDICRRVRAMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFR 125
Query: 120 IK 121
+
Sbjct: 126 RQ 127
>gi|228982217|ref|ZP_04142503.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228777504|gb|EEM25785.1| Two-component response regulator [Bacillus thuringiensis Bt407]
Length = 226
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + +R + ++ +T + L KPF +L+ + L+
Sbjct: 61 GLRVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|183220358|ref|YP_001838354.1| putative two-component response regulator [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189910473|ref|YP_001962028.1| two component response regulator sensor histidine kinase/response
regulator subunits [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167775149|gb|ABZ93450.1| Sensor histidine kinase and response regulator of a two component
complex [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167778780|gb|ABZ97078.1| Putative two-component response regulator; putative membrane
protein; putative signal peptide [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 1065
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
++++ +D+ R+ L L G EV NG A VR E PF L++ DI+MP M G
Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E L ++F+T +A + L+KPF R+L++ L+T+
Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDKRELISRAKNLITL 813
Query: 121 K 121
K
Sbjct: 814 K 814
>gi|163813849|ref|ZP_02205243.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
gi|158450719|gb|EDP27714.1| hypothetical protein COPEUT_00002 [Coprococcus eutactus ATCC 27759]
Length = 223
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ +D+ + + YEV++ G A K+ + L+L DI MP++D
Sbjct: 1 MKQRLLIVDDEPGIVDMMASYFSSQ-YEVLTAYCGNEALQKLARQ-PDLILLDINMPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L ++ EL ++F+T A + KPF L +L V L
Sbjct: 59 GLTLCQKIREL-ITCPILFLTARVESADKIIGFQAGADDYIIKPFDLDELGARVAAHLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|74312742|ref|YP_311161.1| acetoacetate metabolism regulatory protein AtoC [Shigella sonnei
Ss046]
gi|73856219|gb|AAZ88926.1| response regulator of ato [Shigella sonnei Ss046]
gi|323168621|gb|EFZ54301.1| acetoacetate metabolism regulatory protein atoC [Shigella sonnei
53G]
Length = 461
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|51597482|ref|YP_071673.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
32953]
gi|108806370|ref|YP_650286.1| DNA-binding response regulator CreB [Yersinia pestis Antiqua]
gi|108813255|ref|YP_649022.1| DNA-binding response regulator CreB [Yersinia pestis Nepal516]
gi|145597926|ref|YP_001162002.1| DNA-binding response regulator CreB [Yersinia pestis Pestoides F]
gi|165924975|ref|ZP_02220807.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937334|ref|ZP_02225898.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010264|ref|ZP_02231162.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212654|ref|ZP_02238689.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399825|ref|ZP_02305343.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167419175|ref|ZP_02310928.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425262|ref|ZP_02317015.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467689|ref|ZP_02332393.1| DNA-binding response regulator CreB [Yersinia pestis FV-1]
gi|170023127|ref|YP_001719632.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
YPIII]
gi|186896602|ref|YP_001873714.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis
PB1/+]
gi|229837582|ref|ZP_04457744.1| putative response regulator [Yersinia pestis Pestoides A]
gi|229840805|ref|ZP_04460964.1| putative response regulator [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229842636|ref|ZP_04462791.1| putative response regulator [Yersinia pestis biovar Orientalis str.
India 195]
gi|229903711|ref|ZP_04518824.1| putative response regulator [Yersinia pestis Nepal516]
gi|270487490|ref|ZP_06204564.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294502937|ref|YP_003566999.1| response regulator [Yersinia pestis Z176003]
gi|51590764|emb|CAH22409.1| Putative response regulator CreB family [Yersinia
pseudotuberculosis IP 32953]
gi|108776903|gb|ABG19422.1| response regulator [Yersinia pestis Nepal516]
gi|108778283|gb|ABG12341.1| putative response regulator [Yersinia pestis Antiqua]
gi|145209622|gb|ABP39029.1| response regulator [Yersinia pestis Pestoides F]
gi|165914808|gb|EDR33421.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923175|gb|EDR40326.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990750|gb|EDR43051.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205946|gb|EDR50426.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166963169|gb|EDR59190.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050533|gb|EDR61941.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055662|gb|EDR65446.1| transcriptional regulatory protein CreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749661|gb|ACA67179.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186699628|gb|ACC90257.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229679481|gb|EEO75584.1| putative response regulator [Yersinia pestis Nepal516]
gi|229690946|gb|EEO83000.1| putative response regulator [Yersinia pestis biovar Orientalis str.
India 195]
gi|229697171|gb|EEO87218.1| putative response regulator [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229704270|gb|EEO91281.1| putative response regulator [Yersinia pestis Pestoides A]
gi|262360972|gb|ACY57693.1| response regulator [Yersinia pestis D106004]
gi|262364912|gb|ACY61469.1| response regulator [Yersinia pestis D182038]
gi|270335994|gb|EFA46771.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294353396|gb|ADE63737.1| response regulator [Yersinia pestis Z176003]
gi|320014028|gb|ADV97599.1| putative response regulator [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR PDL V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRR 120
>gi|87119492|ref|ZP_01075389.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Marinomonas sp.
MED121]
gi|86164968|gb|EAQ66236.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Marinomonas sp.
MED121]
Length = 560
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ +D +D R L + L + GY E NG A + + ++ + L+L D++MP M
Sbjct: 1 MSVKILIVDDYEDNRYTLKRRLKRDGYKECDEAENGQIALEMMSKKQYDLILLDLMMPIM 60
Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ + + L V+ I+ + A L KPF+ L V
Sbjct: 61 DGFEVLEHMKLKDEFRHLPVIMISAADDLEKIAQGIALGAEDYLPKPFNPIILKARVKSA 120
Query: 118 LTIKN 122
L ++
Sbjct: 121 LEKRS 125
>gi|332687247|ref|YP_004457021.1| phosphate regulon transcriptional regulatory protein PhoB
[Melissococcus plutonius ATCC 35311]
gi|332371256|dbj|BAK22212.1| phosphate regulon transcriptional regulatory protein PhoB
[Melissococcus plutonius ATCC 35311]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GY+VV +G +A +KV P L++ DI+MPEMDG+
Sbjct: 2 KILIVDDDKEIVELLSIYIHNEGYDVVKAYDGKNALNKVHTIPDIDLIILDIMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ + + ++ +T ++KPF+ +++ V +L N
Sbjct: 62 QVVKKLRKE-SQIPIILLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRRSN 120
>gi|313885857|ref|ZP_07819598.1| transcriptional regulatory protein RprY [Porphyromonas
asaccharolytica PR426713P-I]
gi|332300686|ref|YP_004442607.1| two component transcriptional regulator, winged helix family
[Porphyromonas asaccharolytica DSM 20707]
gi|312924686|gb|EFR35454.1| transcriptional regulatory protein RprY [Porphyromonas
asaccharolytica PR426713P-I]
gi|332177749|gb|AEE13439.1| two component transcriptional regulator, winged helix family
[Porphyromonas asaccharolytica DSM 20707]
Length = 243
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++ L EDD+ + L + L YEV +G + + ++ +SL L D++MP+MDG E
Sbjct: 7 RVFLCEDDESLGLMLQEYLIAKDYEVDLFTDGETGLEAFGKKEYSLCLIDVMMPKMDGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA++ + +P++ ++F+T ++KPF +++L + ++
Sbjct: 67 LAKQIRDANPNIPIIFVTAKDQKKDVLRGFKLGADDYITKPFSMQELEARIAAIMRR 123
>gi|295084690|emb|CBK66213.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1344
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1211
>gi|260683442|ref|YP_003214727.1| two-component response regulator [Clostridium difficile CD196]
gi|260687038|ref|YP_003218171.1| two-component response regulator [Clostridium difficile R20291]
gi|260209605|emb|CBA63261.1| two-component response regulator [Clostridium difficile CD196]
gi|260213054|emb|CBE04415.1| two-component response regulator [Clostridium difficile R20291]
Length = 244
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++
Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ LL
Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|227889918|ref|ZP_04007723.1| response regulator [Lactobacillus johnsonii ATCC 33200]
gi|227849362|gb|EEJ59448.1| response regulator [Lactobacillus johnsonii ATCC 33200]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KILL ED++ + F+ L GYEVV +G + +E +L+L D ++P
Sbjct: 1 MEKTKILLIEDEESLASFIQPELELEGYEVVWAKDGKEGLELFEKEKPTLILLDWMLPVY 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + RR ++ D+ ++ +T + ++ ++KPF + +L + +L
Sbjct: 61 DGITVLRRIRKV-SDIPIIMLTARNQASDISNALDQGLDDYMTKPFEIEELFARIRVILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|119487882|ref|ZP_01621379.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119455458|gb|EAW36596.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 222
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AED+ + FL K L G+ + N+G A K F LL+ D+ +P D
Sbjct: 1 MS-RILIAEDEPRIAAFLEKGLKANGFTITVANDGLDALQKALGSQFDLLILDLNLPHQD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + ++ +T + ++KPF +L+ V L
Sbjct: 60 GFQILKQLRGQGEKVPIIILTARDDIEDKVAGLEEGADDYVTKPFRFAELLARVRARLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|115380175|ref|ZP_01467204.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
DW4/3-1]
gi|115362817|gb|EAU62023.1| two-component hybrid sensor and regulator [Stigmatella aurantiaca
DW4/3-1]
Length = 946
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++R F++ L + Y V+ NG + + L+++D++MP M G++
Sbjct: 569 RILVVEDEPEIRDFVVSVLRTS-YRVMEAVNGEEGRQRALQSAPDLIVSDVMMPVMSGLQ 627
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D+ V+ +T VA + + KPF R+L+ + L ++
Sbjct: 628 MLAALRERQETADIPVILLTARQEVAEKVEGLGVGANDYMGKPFSPRELLARIEAQLRLR 687
Query: 122 N 122
+
Sbjct: 688 D 688
>gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311]
gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311]
Length = 237
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G++V + +G + K ++ L+++D++MP +DG
Sbjct: 12 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAEDGEEGFIKAQQMLPDLVISDVMMPRLDGFG 71
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ E + V+F+T A + KPF +LV V + +
Sbjct: 72 LLRKLREDERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 131
>gi|94971486|ref|YP_593534.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94553536|gb|ABF43460.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 230
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL +DD ++ L L G+EV + +NG K +S+++ DI++P +
Sbjct: 1 MKQ-ILLIDDDIELTSLLTDYLKSEGFEVEAVHNGEQGLQKALSGNYSIVVLDIMLPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ RR + V+ +T + KPF+ R+L+ + +L
Sbjct: 60 GLDVLRRLRPQ-SRIPVLLLTARGEDVDRIVGLELGADDYVPKPFNTRELLARIQAILRR 118
>gi|70732320|ref|YP_262076.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68346619|gb|AAY94225.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 236
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +DD ++ L K + GY+VV +GAS + + E L++ D+++P +
Sbjct: 1 MS-RLLIVDDDIEVLALLKKFFVQQGYQVVVATDGASLWAALEREVPDLIILDLMLPGDN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L +R + V+ +T ++ LSKPF R+L+ V +L
Sbjct: 60 GLTLCQRLRQQHA-TPVIMLTAMGELSDRVVGLEMGADDYLSKPFDARELLARVRAVLRR 118
>gi|33866819|ref|NP_898378.1| two-component response regulator [Synechococcus sp. WH 8102]
gi|33639420|emb|CAE08804.1| two-component response regulator [Synechococcus sp. WH 8102]
Length = 245
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+EV + +G + K ++ +++TD++MP +DG
Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 79
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ + V+F+T A + KPF +LV V + +
Sbjct: 80 LLKKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 139
>gi|317475518|ref|ZP_07934781.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
gi|316908349|gb|EFV30040.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
Length = 1347
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R++L + LGK Y V+ NG A + ++E+ +L+LTD++MP MDG
Sbjct: 1098 KESILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDG 1156
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + V+ ++ A + + + KPF L + ++ L
Sbjct: 1157 LQLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216
Query: 120 IK 121
+
Sbjct: 1217 TR 1218
>gi|218128694|ref|ZP_03457498.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
gi|217989149|gb|EEC55464.1| hypothetical protein BACEGG_00265 [Bacteroides eggerthii DSM 20697]
Length = 1347
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R++L + LGK Y V+ NG A + ++E+ +L+LTD++MP MDG
Sbjct: 1098 KESILIVEDNSDIRQYLCEELGKL-YNVLEAKNGKDALEIMKEQEINLILTDVMMPVMDG 1156
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + V+ ++ A + + + KPF L + ++ L
Sbjct: 1157 LQLCKQIKQNLNTCHIPVIILSAKADLEEQLEGLHMGADDYIPKPFSLTLVTTKIRNLFR 1216
Query: 120 IK 121
+
Sbjct: 1217 TR 1218
>gi|170077528|ref|YP_001734166.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
7002]
gi|169885197|gb|ACA98910.1| two-component response regulator (RsbV-like) [Synechococcus sp. PCC
7002]
Length = 376
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD MR L + L + GY+V + ++G + D L+++D +MPEM+GIE+
Sbjct: 4 ILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNGIEV 63
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ AV L KP +L V L I
Sbjct: 64 CQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISSHELEARVRSGLRI 121
>gi|167768194|ref|ZP_02440247.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
gi|317499089|ref|ZP_07957368.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167709718|gb|EDS20297.1| hypothetical protein CLOSS21_02750 [Clostridium sp. SS2/1]
gi|291560216|emb|CBL39016.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
gi|316893609|gb|EFV15812.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ ++ F+ L Y V NG A V E L + D+++P++DG E
Sbjct: 5 TVLVVDDEKEIADFIELYLKNENYNVHKFYNGKDALACVEHENIDLAILDVMLPDIDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ L + V+ +T + + + KPF +L+ V L
Sbjct: 65 ILKQIR-LTHNFPVIMLTAKVSSMDKINGLTLGADDYIEKPFEPLELMARVKAQLRR 120
>gi|153853751|ref|ZP_01995107.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
gi|149753501|gb|EDM63432.1| hypothetical protein DORLON_01098 [Dorea longicatena DSM 13814]
Length = 240
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ ++ + + L GYE + +G A D + E L+L D++MP ++G+
Sbjct: 4 EKILVVDDNKEIVYSISELLKYEGYETLKAYDGMEALDIMERENVDLILLDVMMPRLNGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + V+ ++ + + KP++ +L+ V L
Sbjct: 64 SALMKLREK-SRIPVIILSAKTEESDKVSGLTLGADDYIEKPYNPAELIARVKAHLRR 120
>gi|126661523|ref|ZP_01732571.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
gi|126617189|gb|EAZ88010.1| regulatory components of sensory transduction system [Cyanothece
sp. CCY0110]
Length = 458
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ IL+ +D + L L Y+V +G SA + V+ EP L+L DI MP +DG
Sbjct: 3 SETILIVDDQLPNLKVLSTMLEGKNYKVRKAVDGESAIEAVQIEPPDLILLDIKMPNIDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ +R D+ ++FI+ + V + ++KPF +++ +N LT
Sbjct: 63 YEVCQRLKSDDKTKDVPIIFISALSEVFDKVKAFEVGGIDYITKPFQEEEILARINSQLT 122
Query: 120 IK 121
IK
Sbjct: 123 IK 124
>gi|29345677|ref|NP_809180.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29337569|gb|AAO75374.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1370
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED++++ + K L K Y V+ +G A + +++ ++++D++MPEMDG+E
Sbjct: 1123 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1181
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTI 120
R + ++ +T V + +SKPF L+ L +N ++
Sbjct: 1182 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1241
Query: 121 KN 122
KN
Sbjct: 1242 KN 1243
>gi|75760587|ref|ZP_00740619.1| Two-component response regulator ycbL [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228903054|ref|ZP_04067192.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis IBL 4222]
gi|228967633|ref|ZP_04128655.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar sotto str. T04001]
gi|74491922|gb|EAO55106.1| Two-component response regulator ycbL [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228792069|gb|EEM39649.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228856589|gb|EEN01111.1| Uncharacterized sensory transduction protein ycbL [Bacillus
thuringiensis IBL 4222]
Length = 241
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD ++ + K L K G++V ++G + + F L++ DI+MP++D
Sbjct: 12 MSHHILLVEDDISIQEMVEKYLLKEGFQVTMASDGEAGVQTFFKSSFDLVILDIMMPKLD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L V +
Sbjct: 72 GLEVVRIIREK-SAVPILMMSAKDTDVDKAVGLGLGADDYICKPFSMIELAARVKAGIRR 130
>gi|325571361|ref|ZP_08146861.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
gi|325155837|gb|EGC68033.1| response regulator VanR [Enterococcus casseliflavus ATCC 12755]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +D+ ++ + L G++V +G SA + +E + + D+++P++D
Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQTIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|320160336|ref|YP_004173560.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
thermophila UNI-1]
gi|319994189|dbj|BAJ62960.1| KDP operon transcriptional regulatory protein KdpE [Anaerolinea
thermophila UNI-1]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +RR+L +L GYEV+ G A E +L+ D+ +P++DG+E
Sbjct: 7 RILVVDDERAIRRYLRTSLTALGYEVLEAATGNEALQSAMTEHPDILILDLGLPDIDGVE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E ++ ++ ++ + L+KPF +++L+ + + +
Sbjct: 67 VVRRIRE-WSNVPILILSVRDREDDKVVALDAGADDYLTKPFGIKELLARIRVAIRHR 123
>gi|313890851|ref|ZP_07824475.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
gi|332522247|ref|ZP_08398499.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
gi|313120749|gb|EFR43864.1| response regulator ArlR [Streptococcus pseudoporcinus SPIN 20026]
gi|332313511|gb|EGJ26496.1| response regulator ArlR [Streptococcus porcinus str. Jelinkova 176]
Length = 228
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|307944203|ref|ZP_07659544.1| protein PetR [Roseibium sp. TrichSKD4]
gi|307772549|gb|EFO31769.1| protein PetR [Roseibium sp. TrichSKD4]
Length = 232
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L + GY V + N A + F LL+ D++MP G++
Sbjct: 12 HLLLVDDDQRIRDLLGRLLAENGYRVTTAANAQEARTCLSGLSFDLLILDVMMPGETGLD 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA + D+ ++ +T + + L+KPF ++L+ ++ +L
Sbjct: 72 LASWLRD-HSDVPILMLTARSDASDRIAGLEVGADDYLAKPFEPKELLLRLSAILRR 127
>gi|306826251|ref|ZP_07459585.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
str. 73H25AP]
gi|304431527|gb|EFM34509.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071
str. 73H25AP]
Length = 224
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R + AL + GY V S NG A +K + + L++ DI+MP GIE
Sbjct: 2 KILLAEDETQLNRVITVALEREGYSVDSVFNGQDAVEKAKSNHYHLMIFDIMMPIKTGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T A V L+KPF L++L+ +
Sbjct: 62 ALKEIRQAGNTTHVIMLTAMAEVNDRVTGLDAGADDYLTKPFSLKELLARLRSTARR 118
>gi|220908588|ref|YP_002483899.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7425]
gi|219865199|gb|ACL45538.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7425]
Length = 337
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D L L AG+EV +G SA +K+ L+L D++MP +DG
Sbjct: 8 SGTVLIVDDSPASLGILSDLLETAGFEVWVARSGISAIEKLNHALPDLILLDVMMPGLDG 67
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E RR E DL ++F++ + ++KPF +++ + L
Sbjct: 68 FETCRRIKANEQLQDLPIIFMSSLSDTVDKVKGLQLGGVDYITKPFQQEEVLARIRVHLK 127
Query: 120 IK 121
+K
Sbjct: 128 LK 129
>gi|307152260|ref|YP_003887644.1| AraC family two component transcriptional regulator [Cyanothece sp.
PCC 7822]
gi|306982488|gb|ADN14369.1| two component transcriptional regulator, AraC family [Cyanothece
sp. PCC 7822]
Length = 265
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL EDDD L + L G+ ++S NG + R+ L+L DI+MPE+D
Sbjct: 1 MT-RILLIEDDDLNCTLLQECLESEGFHIISAENGLQGLQQARQHLPDLILCDIMMPELD 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + + + + +F+T A L+KP +++ V L
Sbjct: 60 GYSVLLQLRQDPITAFIPFIFLTAKTTKAEQRRGMELGADDYLTKPLTAEEVIAAVEARL 119
Query: 119 TIK 121
K
Sbjct: 120 ERK 122
>gi|113476695|ref|YP_722756.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167743|gb|ABG52283.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1172
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ D+R ++ + L K+ + VV +GA ++ +++TD++MP + G++
Sbjct: 815 TILVVDDNPDLRNYVSRILRKSNFNVVLARDGAEGFEFAEIHHPHVIITDLMMPVVSGLD 874
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E ++ +T A + LSKPF+ R+L+ EV LL +K
Sbjct: 875 LIKMIREEKQLRGTPIILLTAKADEDTRIEGVERGADAYLSKPFNDRELLAEVRNLLVLK 934
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
KIL+ +D+ L + Y+V+ G+ A + + + +++++D MP+M G
Sbjct: 11 KILVVDDEPYNLDLLYRTF-FQNYKVLRAEGGSEALEVLEKSGEVAVIISDQRMPKMSGT 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNR 116
E E P+ + +TG+ V ++ K ++KP+ +L V +
Sbjct: 70 EFLSLTAEKYPNTIRIILTGYTDVEDLVEAINSGKVFKYVTKPWDDHELKALVKQ 124
>gi|163847991|ref|YP_001636035.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222525873|ref|YP_002570344.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|163669280|gb|ABY35646.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222449752|gb|ACM54018.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 238
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L L G V G S E+ L++ D+++P++DG+
Sbjct: 11 HILVIEDEPTIAESLRVGLTYEGMRVTVTTEGRSGLQVSEEQEVDLVILDLMLPDIDGMV 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L ++ +T V + KPF +L+ V +L
Sbjct: 71 VCRRLRARSSTLPIIMLTARGEVQERVQGLQLGADDYIVKPFSFDELLARVYAVLRR 127
>gi|259502020|ref|ZP_05744922.1| response regulator [Lactobacillus antri DSM 16041]
gi|259170021|gb|EEW54516.1| response regulator [Lactobacillus antri DSM 16041]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE +S +G A K+ P +L++ D++MPEMDG+
Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D D+ ++ ++ A ++KPF+ +++ V LL
Sbjct: 62 EVIKQIRK-DSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|326201364|ref|ZP_08191236.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325988932|gb|EGD49756.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 231
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED++ +R FL K + V+ G K R+E ++L D+++P +
Sbjct: 1 MESKVLIIEDEESIRGFLKINFKKHNFIVIEAATGEEGLLKARQENPDVVLLDVMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + P + ++ +T + KPF+ +L+ LL
Sbjct: 61 GFQVCETLRKELPGVGIIMLTARGQDIDKIKGLEYGADDYVVKPFNTTELILRAKSLLRR 120
>gi|229166773|ref|ZP_04294523.1| Two-component response regulator vanR [Bacillus cereus AH621]
gi|228616770|gb|EEK73845.1| Two-component response regulator vanR [Bacillus cereus AH621]
Length = 242
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDRDIVRFVNANLMQEGFKVFSAHNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ + + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSLDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|225028678|ref|ZP_03717870.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
gi|224953988|gb|EEG35197.1| hypothetical protein EUBHAL_02957 [Eubacterium hallii DSM 3353]
Length = 225
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 65/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ + K+L ++GYEV +C +G A D + E + L++ D+ +P MDG++
Sbjct: 2 RLLIVEDEKELCDTISKSLYESGYEVDTCYDGYEALDYILTEDYDLIVLDLNLPGMDGMD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + + KV+ ++ + + + + KPFH+++L + L K
Sbjct: 62 ILRELRKENEETKVLILSARSQIIDKVEGLDAGANDYMEKPFHIQELEARIRSLTRRK 119
>gi|198275803|ref|ZP_03208334.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
gi|198271432|gb|EDY95702.1| hypothetical protein BACPLE_01978 [Bacteroides plebeius DSM 17135]
Length = 1393
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+D++R +L+ LG + V+SC+NG A D + L+L+DI+MPE++G
Sbjct: 1131 KHSILIVEDEDEIRNYLLTELGSH-FRVLSCSNGKEALDLIMHHMPDLVLSDIMMPEVNG 1189
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I L R+ + + V+ +T + + + ++KPF+L L+ + L+
Sbjct: 1190 ITLLRKLKQNIKTNHIPVILLTAKNSEKDYIEGLSLGADAYIAKPFNLDILITTIENLIK 1249
Query: 120 IK 121
+
Sbjct: 1250 NR 1251
>gi|156972517|ref|YP_001443424.1| transcriptional regulator CpxR [Vibrio harveyi ATCC BAA-1116]
gi|156524111|gb|ABU69197.1| hypothetical protein VIBHAR_00149 [Vibrio harveyi ATCC BAA-1116]
Length = 229
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L + L G++V N+G + + E L+L D++MP+++G+E
Sbjct: 3 KILLIDDDTELTSLLKEVLSFEGFDVTEANDGEAGLAAINSE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|116625746|ref|YP_827902.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116228908|gb|ABJ87617.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 235
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 49/118 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD+ +R ++ L + G+ V +G ++K L+L D+ +P M G
Sbjct: 13 QTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSGT 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ ++ + KPF R+L + +L
Sbjct: 73 EICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR 130
>gi|22298696|ref|NP_681943.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22294876|dbj|BAC08705.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 391
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD R L K L GY V ++G E +L++ D +MPE+DG+E+
Sbjct: 10 ILVIDDDPTTRLLLRKTLRDLGYSVSVASHGREGIAIATAEKPALIICDWMMPELDGLEV 69
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + +T + + LSKP +L + L +
Sbjct: 70 CRHIKQDEELSRSFFILLTAKGELQDRIQGLDAGADEFLSKPIDPNELRARIQAGLRL 127
>gi|298249466|ref|ZP_06973270.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297547470|gb|EFH81337.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 233
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + L + L + + V +G S + + ++ D+++PE+DG E
Sbjct: 2 HILVVEDEKKLAHLLRRVLQEESHTVNLAYDGLSGLELAESGTYDAVVLDVMLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + V+ +T +V L KPF + +L+ VN LL ++
Sbjct: 62 ICRRMRTDNVMSPVLMLTARGSVEDRVAGLNVGADDYLPKPFAMEELLARVNALLRRRD 120
>gi|282882486|ref|ZP_06291107.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
315-B]
gi|281297628|gb|EFA90103.1| transcriptional regulatory protein CutR [Peptoniphilus lacrimalis
315-B]
Length = 223
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ + + K+L ++GYEV NG A + + E + L++ D+ +PE+DG+E
Sbjct: 2 RILIVEDEKDLCQMIAKSLKESGYEVDIAYNGNEAMELLDVENYDLIVLDLNLPEIDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D K++ ++ + + + LSKPFHL +L + LT +N
Sbjct: 62 ILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRS-LTRRN 119
>gi|237718248|ref|ZP_04548729.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229452432|gb|EEO58223.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1324
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + Y+V + +G ++ ++++DI+MP M G+E
Sbjct: 1073 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1131
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1132 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1191
>gi|182413538|ref|YP_001818604.1| two component LuxR family transcriptional regulator [Opitutus
terrae PB90-1]
gi|177840752|gb|ACB75004.1| two component transcriptional regulator, LuxR family [Opitutus
terrae PB90-1]
Length = 301
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +D L+ L AG+EV +G SA +++ ++L D++MP +D
Sbjct: 1 MTKTVLIIDDVPANVGVLLDVLAAAGFEVAVAESGQSALEQLAWLKPDIILLDVLMPGLD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E RR E D+ V+F+T V A L+KP H +++ VN L
Sbjct: 61 GFETCRRLKAREATADVPVLFMTALTEVVDKVKGFAAGAVDYLAKPLHPEEVLARVNAHL 120
Query: 119 TIK 121
I+
Sbjct: 121 KIR 123
>gi|330447113|ref|ZP_08310763.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328491304|dbj|GAA05260.1| response regulator [Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 230
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L L G++VV NNG +KV L+L D++MP M+G E
Sbjct: 3 KILLVDDDVELTALLKDILELEGFDVVEANNGQQGLEKVDS-SIDLILLDVMMPVMNGTE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E VM +T L KPF R+L+ + +L
Sbjct: 62 MLRRLRESH-TTPVMMLTAKGDEIDRILGLELGADDYLPKPFSDRELLARMRAVLRR 117
>gi|300813866|ref|ZP_07094171.1| response regulator receiver domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300512053|gb|EFK39248.1| response regulator receiver domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 223
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ + + K+L ++GYEV NNG A + + E + L++ D+ +PE+DG+E
Sbjct: 2 RILIVEDEKDLCQMIAKSLKESGYEVDIANNGNEAMELLDVENYDLIVLDLNLPEIDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D K++ ++ + + + LSKPFHL +L + LT +N
Sbjct: 62 ILEEFRTFNQDTKIIILSARSQIKDKVEGLDKGANDYLSKPFHLDELEARIRS-LTRRN 119
>gi|297243684|ref|ZP_06927615.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis AMD]
gi|296888435|gb|EFH27176.1| response regulator (CheY receiver/winged-helix DNA-binding)
[Gardnerella vaginalis AMD]
Length = 250
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ + + + G+ +GASA + L++ D+++P MDGI
Sbjct: 12 RTILVVEDEPDLATAIAQRITAQGWRARVAADGASAVRAAEQLKPDLIIMDVMLPIMDGI 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR P + ++ +T A A + ++KPF R+L+ LL
Sbjct: 72 EATRRIISKMP-VPILMLTARDAEADKIVGLSAGADDYMTKPFSPRELIARCAALLRR 128
>gi|229087735|ref|ZP_04219858.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
gi|228695570|gb|EEL48432.1| DNA-binding response regulator [Bacillus cereus Rock3-44]
Length = 223
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A + EE +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGNEALQRWAEE-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRVFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNHAELILRVKNMARR 117
>gi|45934807|gb|AAS79471.1| putative two-component system response regulator [Streptomyces
bikiniensis]
Length = 228
Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD+ +RR + +L + GY V +G + + RE L+L D+++P +DGI
Sbjct: 2 TVLLVEDDEVIRRSVAMSLERYGYRVRVAADGLTGLELFREGRHDLVLLDVMLPGLDGIG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D ++ ++ + KP LV + LL
Sbjct: 62 LCRRIRETATD-PILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 117
>gi|323487492|ref|ZP_08092786.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
WAL-14163]
gi|323694424|ref|ZP_08108595.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323399174|gb|EGA91578.1| hypothetical protein HMPREF9474_04537 [Clostridium symbiosum
WAL-14163]
gi|323501505|gb|EGB17396.1| two component transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + + +L + G EV +G A +E + ++L D+++P+ DG E
Sbjct: 3 KVLVVDDEKLIVKGIRFSLEQDGMEVDCAYDGEEAIRMAKETEYDIVLLDVMLPKFDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 63 VCQAIRE-FSEMPIIMVTAKGGDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 118
>gi|312622290|ref|YP_004023903.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
gi|312202757|gb|ADQ46084.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor kronotskyensis 2002]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|238917142|ref|YP_002930659.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
gi|238872502|gb|ACR72212.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + + L +L + EV +G A + VR + ++L DI++P++D
Sbjct: 10 MAGRVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLD 69
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ E ++ ++ +T ++KPF++ ++ + +L
Sbjct: 70 GLSVCQQIRE-FSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRR 128
>gi|161779855|gb|ABX79416.1| VanRc4 [Enterococcus casseliflavus]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +D+ ++ + L G++V +G SA + +E + + D+++P++D
Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQTIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|165869837|ref|ZP_02214495.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|254754585|ref|ZP_05206620.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|164714666|gb|EDR20185.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|161520008|ref|YP_001583435.1| two component transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|189353810|ref|YP_001949437.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
gi|160344058|gb|ABX17143.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans ATCC 17616]
gi|189337832|dbj|BAG46901.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
Length = 246
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + L++ D+++P
Sbjct: 1 MDKPDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T + L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|152974618|ref|YP_001374135.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023370|gb|ABS21140.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 220
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD++++ + + L Y V ++G + + PF L+L D++MP ++
Sbjct: 1 MNYHILVIEDDEEIQELIKQFLITQQYIVTVASDGLEGMKQFNKHPFDLILLDVMMPNLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+A ++ ++ +T ++KPF + V +L
Sbjct: 61 GFEVANIIRNQ-SNIPIILLTALEEEQDQMKGFDLGIDDYITKPFSFHVFIRRVEAVLRR 119
>gi|226943977|ref|YP_002799050.1| Response regulator, two-component [Azotobacter vinelandii DJ]
gi|226718904|gb|ACO78075.1| Response regulator, two-component [Azotobacter vinelandii DJ]
Length = 219
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL GY V +GASA + E F L + D+ +P +DG++
Sbjct: 2 RILLVEDDAALGEGIRTALKPEGYTVDWLQDGASALHALGCESFDLCVLDLGLPRLDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L V+ +T A + L KPF + +L + LL
Sbjct: 62 VLRRLRAAGNPLPVLVLTARDATSERIAGLDAGADDYLVKPFDVAELKARLRALLRR 118
>gi|304382668|ref|ZP_07365162.1| response regulator [Prevotella marshii DSM 16973]
gi|304336293|gb|EFM02535.1| response regulator [Prevotella marshii DSM 16973]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ +ILL EDD+++ L + L GY +G + Y + + + + D++MP+
Sbjct: 1 MNEQLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFIKNKYDICVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 61 KDGFTLAQEIRQANAEIPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|290955980|ref|YP_003487162.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260645506|emb|CBG68594.1| putative two-component system response regulator [Streptomyces
scabiei 87.22]
Length = 248
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ EDD +R L AL AGY V + + G +A + L++ D+ +P++DG
Sbjct: 13 HNVLVVEDDPSIRTLLTSALHAAGYSVSTADTGQTAMFEAGRGQPDLIVLDVGLPDIDGF 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R V+F+T V + ++KPFH+++++ + +L +
Sbjct: 73 AVTRHLRAEGVYTPVLFLTARTDVEDRIIGLSSGGDDYVTKPFHVQEVLLRIRAILRRSD 132
>gi|227538398|ref|ZP_03968447.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
gi|227241745|gb|EEI91760.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L + GY+V + +NG A + +E L++ D++MP+MDG
Sbjct: 5 KQKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + ++F+T + ++KP R L++ +N +L
Sbjct: 65 IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|312128910|ref|YP_003996250.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
gi|311905456|gb|ADQ15897.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + ++L +A Y V S + K+ + + +L D+++P+ +G++
Sbjct: 2 KILIVEDETEISKLIQESLEEAQYLVESASTFKEGLLKIEDYQYDAILLDLMLPDGNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L P+ V+ ++ AV L+KPFHL +L + + L +N
Sbjct: 62 LLSEIRSSQPNTSVIILSAKDAVEDKVKGLDLGADDYLAKPFHLVELHSRLKSALRRRN 120
>gi|295093005|emb|CBK82096.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus sp.
ART55/1]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L +L + EV + +G A +K++ + ++L DI++P GI
Sbjct: 2 KKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAIEKIKANDYDIVLLDIMIPVYTGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + E ++ ++ +T ++KPF++ ++ + +L N
Sbjct: 62 EVCQMVRE-FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRRSN 120
>gi|260174235|ref|ZP_05760647.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Bacteroides sp. D2]
gi|315922504|ref|ZP_07918744.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313696379|gb|EFS33214.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1343
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + Y+V + +G ++ ++++DI+MP M G+E
Sbjct: 1092 KILIVEDNPEMRKVLAQIFEQI-YDVYTAADGQEGLEQASSLQPQMIVSDIMMPVMSGLE 1150
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1151 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1210
>gi|253567663|ref|ZP_04845074.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251841736|gb|EES69816.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1348
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED++++ + K L K Y V+ +G A + +++ ++++D++MPEMDG+E
Sbjct: 1101 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1159
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTI 120
R + ++ +T V + +SKPF L+ L +N ++
Sbjct: 1160 FCRALKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1219
Query: 121 KN 122
KN
Sbjct: 1220 KN 1221
>gi|238916038|ref|YP_002929555.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
gi|238871398|gb|ACR71108.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Eubacterium eligens ATCC 27750]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L GYEV CN+G S E + + DI++P D
Sbjct: 10 MS-KILIVEDEESIADIEKDYLELNGYEVEVCNDGTSGLAAALHEDIDMCILDIMLPGTD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E+ D+ ++ ++ ++KPF +LV V L
Sbjct: 69 GFEICKQVREV-KDIPIIMVSAKKEDIDKIRGLGVGADDYMTKPFSPSELVARVKAHLAR 127
>gi|228983785|ref|ZP_04143982.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775980|gb|EEM24349.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEAIKLIEQKDFDIILLDVMMPNMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|260588299|ref|ZP_05854212.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
gi|260541350|gb|EEX21919.1| DNA-binding response regulator VicR [Blautia hansenii DSM 20583]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQAENIEADFCNTGKDGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|169827847|ref|YP_001698005.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
gi|168992335|gb|ACA39875.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + L Y V ++G + + L++ DI++P M+G
Sbjct: 2 KKILLIEDEVSIAELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ ++ ++F++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAVN-NIPILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|83956294|ref|ZP_00964735.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
gi|83839515|gb|EAP78696.1| DNA-binding response regulator [Sulfitobacter sp. NAS-14.1]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D D++R + L + G + A + F L++ D++MP
Sbjct: 1 MSEPAHILVVDDHDEIRNSVSSYLERNGMRTSVAESAAEMDAQRARHSFDLIVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ +R + V+ +T + LSKPF+ R+L+ + ++
Sbjct: 61 EDGLTACKRLRQEC-GTPVLMLTALGEDDDRIEGLEGGADDYLSKPFNPRELLARIRAIM 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|332829569|gb|EGK02215.1| hypothetical protein HMPREF9455_01485 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1347
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 4/123 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ ED+ DM+ F+ K L GY V+ N+G + +E L+++DI+MP MDGI
Sbjct: 1096 QTILIVEDNPDMQEFIRKNLI-LGYNVLLANDGIEGIKLLEKEEIDLIISDIMMPNMDGI 1154
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT- 119
E + L + ++ +T +A ++ + KPF + L ++ LL
Sbjct: 1155 EFCNKVKNSLLWNHIPLIMLTAKTNIASKIEALETGADAYIEKPFSISFLSVQIRNLLES 1214
Query: 120 IKN 122
++
Sbjct: 1215 RRS 1217
>gi|332296285|ref|YP_004438208.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
gi|332179388|gb|AEE15077.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K + GY V NG + + ++ DI++P +DGI
Sbjct: 5 RLLIVEDEKTLANLIKKGFEEEGYAVDVTYNGEDGLFFAKNNIYDAIVLDIMLPIIDGIS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+ +T +V + L+KPF +L++ V L+ +
Sbjct: 65 LLKELREQNISTPVIILTAKDSVKDKVLGLDSGSDDYLTKPFSFEELLSRVRALIRRR 122
>gi|329955010|ref|ZP_08295991.1| putative transcriptional regulatory protein RprY [Bacteroides
clarus YIT 12056]
gi|328526300|gb|EGF53315.1| putative transcriptional regulatory protein RprY [Bacteroides
clarus YIT 12056]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED++ + + L + + + +G + + +L+ D++MP M
Sbjct: 1 MDKIKVLLVEDEETLAMIIKDTLEGQNFTIHTAADGEEGLRRFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|301168535|emb|CBW28125.1| nitrogen regulation protein [Bacteriovorax marinus SJ]
Length = 499
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
K+L+ +DD ++ + +AL ++V + +NG A V +E + L++ D+ MPEM GI
Sbjct: 2 HKVLVVDDDKVLQDSVKQALEFHHFKVDTADNGKEALSCVYKEKYDLVVMDVNMPEMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + DP + V+ +T ++ V + L KP +LV + R L ++
Sbjct: 62 EALTEIKKYDPSIIVLILTAYSNVGDAVKAVKEGAYNYLEKPISSENLVALIKRALKARS 121
>gi|296111273|ref|YP_003621655.1| response regulator [Leuconostoc kimchii IMSNU 11154]
gi|295832805|gb|ADG40686.1| response regulator [Leuconostoc kimchii IMSNU 11154]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYEV + +G + D + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFVGLELKHEGYEVETVLDGRAGLDAALANNYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLRESKK-TPIIMMTARDSVIDRISGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|294647433|ref|ZP_06725019.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|292637224|gb|EFF55656.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
Length = 1298
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1167
>gi|326319281|ref|YP_004236953.1| winged helix family two component transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323376117|gb|ADX48386.1| two component transcriptional regulator, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 248
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD ++R L L AG + +G + + + L++ D+++P DG+
Sbjct: 11 RILVVDDDPEIRELLCDYLRAAGLRPAAVADGEAMWQWLARHTADLVVLDLMLPGTDGLA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ +T A+ L KPF R+L+ +N +L
Sbjct: 71 LCRALRECT-HIPVVMLTARGALLDRILGLEMGADDYLPKPFDPRELLARINVVLRR 126
>gi|257884194|ref|ZP_05663847.1| two component transcriptional regulator [Enterococcus faecium
1,231,501]
gi|257820032|gb|EEV47180.1| two component transcriptional regulator [Enterococcus faecium
1,231,501]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L++ L K GY V S G A D + ++ F L L DI++PE+DG E
Sbjct: 6 KILVVEDNLAINKLLVRTLEKNGYTVYSVFTGKEAADIIEQQEFDLALLDIMLPEIDGYE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E DL V+F+T ++ ++KPF L +L+ V +L
Sbjct: 66 VFAYMREY--DLPVIFLTAKDQISDRVSGLRSGAEDYITKPFDLEELLARVEVVLRR 120
>gi|229164200|ref|ZP_04292135.1| DNA-binding response regulator [Bacillus cereus R309803]
gi|228619317|gb|EEK76208.1| DNA-binding response regulator [Bacillus cereus R309803]
Length = 224
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A +K E +L+ D+++P+ DG E
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREAVEKWNEG-PDVLILDVMLPDTDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D D+ V+ +T + + ++KPF+ +L+ V ++ +
Sbjct: 62 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKN-MSRR 118
>gi|225420051|ref|ZP_03762354.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
DSM 15981]
gi|225041307|gb|EEG51553.1| hypothetical protein CLOSTASPAR_06394 [Clostridium asparagiforme
DSM 15981]
Length = 234
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY+V N A + + +E L+L DI+MP M+G+E+
Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILEKEEIHLVLLDIMMPGMNGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120
>gi|222152557|ref|YP_002561732.1| response regulator protein [Streptococcus uberis 0140J]
gi|222113368|emb|CAR40995.1| response regulator protein [Streptococcus uberis 0140J]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|209523935|ref|ZP_03272487.1| response regulator receiver modulated serine phosphatase
[Arthrospira maxima CS-328]
gi|209495607|gb|EDZ95910.1| response regulator receiver modulated serine phosphatase
[Arthrospira maxima CS-328]
Length = 394
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE
Sbjct: 19 KILVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIE 78
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + +T AV LSKP + +L V L +
Sbjct: 79 VCRQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLRL 137
>gi|170724335|ref|YP_001752023.1| two component heavy metal response transcriptional regulator
[Pseudomonas putida W619]
gi|169762338|gb|ACA75654.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas putida W619]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A + + E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGVYLQQGLTEAGFTVDRVMTGTDALQQAQSEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ D+ V+F+T V L KPF +L+ V LL N
Sbjct: 62 VLRKIRAAGKDVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGN 120
>gi|159897113|ref|YP_001543360.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
23779]
gi|159890152|gb|ABX03232.1| response regulator receiver protein [Herpetosiphon aurantiacus ATCC
23779]
Length = 250
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD + R L+ L +AG++ + N G + + F ++L D+++P++ G E
Sbjct: 6 HILVVEDDPAIGRLLLMHLREAGWQAILANTGMTGLRLWASDCFQIVLLDVMLPDLSGWE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ ++ ++ +T A+ L+KPF L+ V RL+ +
Sbjct: 66 LCQQLRAE-SNVPILMLTAKASDDDVVRGLNLGADDYLTKPFSQAQLIARVQRLIQRQ 122
>gi|89891604|ref|ZP_01203108.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
gi|89516151|gb|EAS18814.1| DNA-binding response regulator RprY [Flavobacteria bacterium BBFL7]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KILL EDD + L L ++VV NG ++K +++ + L + D++MP DG
Sbjct: 5 DKKILLVEDDPNFGTVLKDYLMMNDFDVVHAKNGMEGFEKFKKDNYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LA+ E + ++ ++F+T A L+KPF L+ ++ ++ K
Sbjct: 65 FTLAKEIREKNEEVPIIFLTAKAMKEDVLRGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 124
>gi|325000981|ref|ZP_08122093.1| two component transcriptional regulator, winged helix family
protein [Pseudonocardia sp. P1]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ NG A + ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFMLRKEGFTTAVAANGNDALSEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTDVCKALRSR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARVRAVLRR 118
>gi|289770395|ref|ZP_06529773.1| two component system response regulator [Streptomyces lividans
TK24]
gi|289700594|gb|EFD68023.1| two component system response regulator [Streptomyces lividans
TK24]
Length = 285
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A R+ ++ D+++P+MDG+
Sbjct: 60 RVLVVDDEQSITELLSMALRYEGWQIRSAGDGHGAVQTARDFRPDAVVLDMMLPDMDGLS 119
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 120 VLGRLRRDLPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 176
>gi|254466921|ref|ZP_05080332.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacterales bacterium Y4I]
gi|206687829|gb|EDZ48311.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacterales bacterium Y4I]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ +G A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDEMAQREVLAYNLEADGFRVLRAGHGEEALLVVEEDMPDIIILDWMMPNLSGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ V+ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRRLKTRSETRNIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125
>gi|119493875|ref|ZP_01624440.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
gi|119452387|gb|EAW33578.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
Length = 335
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + RFL L + GYEV NG A + EP L+L D+ MP+M G E+
Sbjct: 13 ILIVDDTPNNLRFLSSMLLEHGYEVRKAINGQMALRSAQAEPPDLILLDVRMPDMSGYEV 72
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E ++ V+F++ + ++KPF +++++ V +TI++
Sbjct: 73 CHALKEKPETREIPVIFLSALDHEKDKVIAFEMGAVDYVTKPFQFQEVLSRVKTHITIQH 132
>gi|104780757|ref|YP_607255.1| sensor histidine kinase/response regulator [Pseudomonas entomophila
L48]
gi|95109744|emb|CAK14447.1| putative sensor histidine kinase/response regulator hybrid
[Pseudomonas entomophila L48]
Length = 784
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V +GA A + + +E F L+L D MP MDG E
Sbjct: 664 RILLVEDNPVNQLVAKGMLAKLGCQVQVAAHGAEALELLEQETFDLVLMDCNMPVMDGYE 723
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ ++
Sbjct: 724 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHW 779
>gi|33866766|ref|NP_898325.1| two-component response regulator [Synechococcus sp. WH 8102]
gi|33639367|emb|CAE08751.1| two-component response regulator [Synechococcus sp. WH 8102]
Length = 262
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R + ++ +T L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDDRTSGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|13472734|ref|NP_104301.1| two-component response regulator [Mesorhizobium loti MAFF303099]
gi|14023481|dbj|BAB50087.1| two-component response regulator [Mesorhizobium loti MAFF303099]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ +R+ L LG GY + N A + + +E L+L D+ +P M G
Sbjct: 5 NVRILVVDDEPPIRKLLRVGLGSQGYAISEAPNAKVAIELMEQEKPDLVLLDLGLPGMGG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL R+ + D+ V+ ++ A ++ ++KPF + +LV + L K
Sbjct: 65 HELLRKWRDEGLDIPVVILSSRTDEAGIVNALELGADDYVTKPFGMNELVARIRVALRHK 124
>gi|294809168|ref|ZP_06767884.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|294443562|gb|EFG12313.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1301
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +MR+ L + + YEV + +G ++ ++++DI+MP M G+E
Sbjct: 1093 KILIVEDNPEMRKVLTQIFEQI-YEVYTAADGQEGLERASSLQPQMIVSDIMMPVMSGLE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + +SKPF+++ LV N ++ +
Sbjct: 1152 MCEKLKSNLQTSHIPVVLLTARNREEHTLEGLQTGADDYISKPFNIKILVARCNNIIQTR 1211
>gi|154503148|ref|ZP_02040208.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
gi|153796142|gb|EDN78562.1| hypothetical protein RUMGNA_00972 [Ruminococcus gnavus ATCC 29149]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + IL+ +D+ ++ + + L GY+VV +G A + + L+L D++MP +
Sbjct: 1 MNGETILVVDDNQEIVYSISELLKYEGYQVVKAYDGMEALNALEINNIDLILLDVMMPRL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+ + E + V+ ++ + + KP++ +L+ + L
Sbjct: 61 NGLSALMKLRENYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELIARIKAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|153871118|ref|ZP_02000369.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
gi|152072417|gb|EDN69632.1| two-component hybrid sensor and regulator [Beggiatoa sp. PS]
Length = 866
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ + R+ L + L K+GYEV + G A +K++EE ++L D++MP+M
Sbjct: 572 MS-KILVVDDNLNTRKMLCRHLTKSGYEVSETDRGKIALEKIKEELPEVILLDVMMPDMT 630
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G E+ ++ + + ++ +T + ++KPF + +L+ +
Sbjct: 631 GFEVCQQLRKTPQYELIYIIMLTALTDSKYKIEGLDKGADDYVTKPFDISELLARIR 687
>gi|83646343|ref|YP_434778.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83634386|gb|ABC30353.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ R +L K L +AG+ V + NG E F L++ DI++P++DG
Sbjct: 2 KLLVVEDEAKTREYLRKGLTEAGFVVDTAANGLDGRHLAMTEHFDLIVMDIMLPDLDGWR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E V+F+T +V+ L KPF +L+ V +L
Sbjct: 62 LLGSLREAGNATPVLFLTARDSVSDRVQGLESGADDYLVKPFAFSELLARVRNILRR 118
>gi|56696826|ref|YP_167188.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
pomeroyi DSS-3]
gi|56678563|gb|AAV95229.1| phosphate regulon transcriptional regulatory protein PhoB [Ruegeria
pomeroyi DSS-3]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L L G+ V+ NG A V E+ +++ D +MP + GIE+
Sbjct: 8 VLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAMLLVDEDTPDIIVLDWMMPNLSGIEV 67
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + V+ ++ + + KP+ + +L+ V L
Sbjct: 68 CRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRSQLRR 125
>gi|298241305|ref|ZP_06965112.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554359|gb|EFH88223.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 261
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ + +F+ AL A Y V+S +G +A RE+ L+L DI +P +DG
Sbjct: 22 TILLVEDEKSILQFVRDALEDADYTVLSAEDGLNALKLAREKQIDLVLLDIGLPGLDGFS 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E D + ++ ++ + A + KPF +R+L+ V L +
Sbjct: 82 VCRVLRE-DLHIPILIVSARQSDADKVQGFGVGADDYIMKPFSIRELLARVQAHLRRE 138
>gi|229169399|ref|ZP_04297109.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
gi|228614162|gb|EEK71277.1| hypothetical protein bcere0007_43490 [Bacillus cereus AH621]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V +G +E + L++ DI++P+M+G
Sbjct: 2 KRILLVEDEISIAELQRDYLEISDFQVDVEYSGEIGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|227878289|ref|ZP_03996251.1| response regulator [Lactobacillus crispatus JV-V01]
gi|256844179|ref|ZP_05549666.1| response regulator [Lactobacillus crispatus 125-2-CHN]
gi|256850449|ref|ZP_05555876.1| response regulator [Lactobacillus crispatus MV-1A-US]
gi|262047895|ref|ZP_06020842.1| response regulator [Lactobacillus crispatus MV-3A-US]
gi|312976705|ref|ZP_07788454.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
gi|227862120|gb|EEJ69677.1| response regulator [Lactobacillus crispatus JV-V01]
gi|256614084|gb|EEU19286.1| response regulator [Lactobacillus crispatus 125-2-CHN]
gi|256712654|gb|EEU27648.1| response regulator [Lactobacillus crispatus MV-1A-US]
gi|260571802|gb|EEX28376.1| response regulator [Lactobacillus crispatus MV-3A-US]
gi|310896033|gb|EFQ45098.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ L Y+VV +G A D +E +L+L D ++P DG+
Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDLFTQEKPTLILLDWMLPVYDGMT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ ++ +T + + + L+KPF + +L+ + +L
Sbjct: 67 VLRRIRKQ-SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122
>gi|255691944|ref|ZP_05415619.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260622353|gb|EEX45224.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1348
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED++++ + K L + Y V+ NG A D +++ ++++D++MPEMDG+E
Sbjct: 1101 HLLLVEDNEELLYLMEKILSRQ-YHVLVAKNGLEALDIIKDNEIDIIISDVMMPEMDGLE 1159
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L R + V+ +T + +SKPF L+ L +N +
Sbjct: 1160 LCRNIKSNLETSHIPVILLTAKNTAEDRIECYNAGADGYISKPFELKILEARINNFI 1216
>gi|255282006|ref|ZP_05346561.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
14469]
gi|255267325|gb|EET60530.1| DNA-binding response regulator CsrR [Bryantella formatexigens DSM
14469]
Length = 247
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + RF+ L GY V NG A + F+L+L DI++P ++
Sbjct: 7 MGAHILVVEDEEKLARFVELELVHEGYTVSKAVNGREALEIALSGDFALILLDIMLPGLN 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + P V+ +T AV ++KPF + +L+ + L +
Sbjct: 67 GLEVLRRLQQEKP-TPVILLTARDAVMDKVAGLDAGAVDYITKPFAIEELLARIRVALKL 125
>gi|150390837|ref|YP_001320886.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149950699|gb|ABR49227.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 236
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ K+L+ +D+ ++ + L ++G+E++ C NG A + + L+L D+++P++
Sbjct: 1 MNRTKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDI 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ RR E ++ +T + ++KPF LR+L V +
Sbjct: 61 DGLEVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|300857600|ref|YP_003782583.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|300685054|gb|ADK27976.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|302205340|gb|ADL09682.1| Two-component regulatory protein [Corynebacterium
pseudotuberculosis C231]
gi|302329894|gb|ADL20088.1| Two-component regulatory protein [Corynebacterium
pseudotuberculosis 1002]
gi|308275579|gb|ADO25478.1| Two-component system transcriptional regulatory regulatory protein
[Corynebacterium pseudotuberculosis I19]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ M + + AL G+EV+S + + + E L++ D+++P+ G
Sbjct: 4 RRVLVVDDEPQMVQIISYALELEGWEVLSAASAQKGWQLLGEYRCDLVILDVMLPDASGY 63
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + ++KPF ++LV ++
Sbjct: 64 ALCERIRASGDVAATPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAVVRR 123
>gi|289674468|ref|ZP_06495358.1| osmolarity response regulator [Pseudomonas syringae pv. syringae
FF5]
Length = 145
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVANVEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 SACRRLRAANNQVPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|226349472|ref|YP_002776586.1| putative OmpR family two-component response regulator [Rhodococcus
opacus B4]
gi|226245387|dbj|BAH55734.1| putative OmpR family two-component response regulator [Rhodococcus
opacus B4]
Length = 253
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + +EV NG A RE +++ D+ +P MDGIE+
Sbjct: 21 LVVDDERPLAAVVASYLEREHFEVAVAYNGVDALTLAREIDPDVVVLDLGLPGMDGIEVC 80
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D V+ +T +A + ++KPF R+LV + +L
Sbjct: 81 RELR-TFSDAYVVMLTARSAEMDTIIGLSVGADDYVTKPFSPRELVARIRAMLRR 134
>gi|168178399|ref|ZP_02613063.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
gi|182670659|gb|EDT82633.1| regulatory protein VanR [Clostridium botulinum NCTC 2916]
gi|322805312|emb|CBZ02876.1| two component transcriptional regulator, winged helix family
[Clostridium botulinum H04402 065]
Length = 236
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD D+R L L Y ++ NG A + + E L+L D++MP MDGIE+
Sbjct: 4 ILLVDDDKDIRNALKIYLTHDDYRILEAENGKKAVNTLHENEIHLILLDVMMPIMDGIEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A++ ++ ++F++ + ++KPF+ +L V L
Sbjct: 64 AQKIR-TFSNVPILFLSAKSEDTDKLLGLNVGGDDYITKPFNPMELTARVKSALRR 118
>gi|153869319|ref|ZP_01998959.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
gi|152074149|gb|EDN71035.1| sensory box/GGDEF family protein [Beggiatoa sp. PS]
Length = 576
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 4/121 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K IL+ +D+ R + L GY +V NG A K E L+L D++MP
Sbjct: 1 MTEKSTILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKAAESIPDLMLLDVMMPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ +R +L ++ +T +SKPF +L V
Sbjct: 61 MDGFEVCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPFDRAELRARVRT 120
Query: 117 L 117
+
Sbjct: 121 I 121
>gi|86132460|ref|ZP_01051054.1| two-component system response regulator [Dokdonia donghaensis
MED134]
gi|85817021|gb|EAQ38205.1| two-component system response regulator [Dokdonia donghaensis
MED134]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY+V++ +NG A ++ L++ D++MP
Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGLEAVKLAKKHQPHLIILDVMMP 60
Query: 58 EMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + F T ++KP + L+++V
Sbjct: 61 EMDGIEACEIIRSNKDLEQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLLSKVK 120
Query: 116 RLLTI-KN 122
LL KN
Sbjct: 121 ALLRRFKN 128
>gi|295087206|emb|CBK68729.1| His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase
B-, and HSP90-like ATPase./Response regulator receiver
domain./Two component regulator propeller./Bacterial
regulatory helix-turn-helix proteins, AraC family./Y_Y_Y
domain. [Bacteroides xylanisolvens XB1A]
Length = 1298
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1049 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1107
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1108 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1167
>gi|323343003|ref|ZP_08083234.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463067|gb|EFY08262.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ D+ L L + Y + NG A + + +E L+L D++MP MDG+E
Sbjct: 19 KILICDDERDIVNALKIYLSQEDYIIYEAFNGVEALEILVQEHIDLVLLDVMMPVMDGLE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ +T ++KPF+ +++ V L
Sbjct: 79 AMMHIRKTT-TIPIILLTAKGEDTDKILGLNVGADDYITKPFNPMEVIARVKSQLRR 134
>gi|283798612|ref|ZP_06347765.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|291073596|gb|EFE10960.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|295090640|emb|CBK76747.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV +NG + + EE F LL+ D+++P +D
Sbjct: 1 MS-RILIVEDEEAIAELEKDYLELSGFEVEIEDNGETGLKRALEEDFDLLILDLMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E + ++ ++ ++KPF ++V V +
Sbjct: 60 GFEICRKVREA-KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118
>gi|167769639|ref|ZP_02441692.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
17241]
gi|167668000|gb|EDS12130.1| hypothetical protein ANACOL_00973 [Anaerotruncus colihominis DSM
17241]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + +++ E CN G K++E+ + L++ D++MP MD
Sbjct: 1 MN-KILIIDDDRELCALIKRSVQTEHIEADFCNTGKEGLQKLKEQEYQLVVLDVMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRR 118
>gi|86157482|ref|YP_464267.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85773993|gb|ABC80830.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 481
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 58/118 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++RR L L GY V+ + + ++ EP L + DI +P MDG+ L
Sbjct: 8 ILVVDDERNIRRTLRMVLEAEGYAVLEAESAEQGLEVLQSEPVDLGVFDIRLPGMDGLAL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RA EL DL V+ I+G A + D+ SKP ++ V L+ ++
Sbjct: 68 LSRARELWRDLPVIMISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALSRRD 125
>gi|38232699|ref|NP_938466.1| putative two-component system response regulator [Corynebacterium
diphtheriae NCTC 13129]
gi|38198957|emb|CAE48572.1| Putative two-component system response regulator [Corynebacterium
diphtheriae]
Length = 240
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129
>gi|329934222|ref|ZP_08284301.1| putative two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329305818|gb|EGG49673.1| putative two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 255
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD +RR + AL + GY V + +G + + RE LLL D+++P +DGI
Sbjct: 8 TILLVEDDTVIRRSVTMALERYGYRVTAAADGLTGLELFREGRHDLLLLDVMLPGLDGIG 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E D V+ ++ + KP LV + LL
Sbjct: 68 LCRRIRETSMD-PVLMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 123
>gi|313632439|gb|EFR99462.1| response regulator SaeR [Listeria seeligeri FSL N1-067]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D++ + + L K G+ V++ NNG A + E LL+ DI+MP+MDG
Sbjct: 3 TILLVDDEETIVDVCRRYLEKEGFRVLTANNGEVALQLYKSEHVDLLVVDIMMPKMDGHT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L EL+ D ++++ +SKPF R+LV V +L
Sbjct: 63 LVMEIQELEKDTPFLYLSALTQEKERLYGLTLGADDYMSKPFSPRELVLRVKNILRR 119
>gi|312130834|ref|YP_003998174.1| histidine kinase [Leadbetterella byssophila DSM 17132]
gi|311907380|gb|ADQ17821.1| histidine kinase [Leadbetterella byssophila DSM 17132]
Length = 1291
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL ED+ ++R+ + + L Y++ +G ++ +E L+++DI+MP+MDGIEL
Sbjct: 1047 LLVEDNREIRQMIKEILSPY-YQIREATDGMEGWNMAQEISPDLIISDIMMPQMDGIELC 1105
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T A VA + ++KPF L+ + LL +
Sbjct: 1106 GKLKTDPKTSHIPVILLTARATVAYKQEGYETGADAYITKPFSPNLLLVRIKNLLHQR 1163
>gi|331683897|ref|ZP_08384493.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli H299]
gi|331078849|gb|EGI50051.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli H299]
Length = 461
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|271966272|ref|YP_003340468.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270509447|gb|ACZ87725.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+ K+L+ +D+ ++R L +AL G+ V + +G A + V E +++ D++M
Sbjct: 1 MNEQPAVKVLVVDDEPNIRELLSEALELNGFAVRTAADGRQALEAVARERPDIIVLDVMM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DG +AR+ E ++F+T AV+ ++KPF L ++V +
Sbjct: 61 PAPDGFTVARKLREAGDSPLLLFLTAKDAVSDRIAGLTAGGDDYVTKPFSLEEVVLRLRA 120
Query: 117 LLTI 120
++
Sbjct: 121 IMRR 124
>gi|256833046|ref|YP_003161773.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
gi|256686577|gb|ACV09470.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + + L G++ C +G SA + L+L D+++P D
Sbjct: 1 MTHRVLVVDDDTALSEMIGIVLKAEGFDAEFCADGDSALQTFHDTQPDLVLLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ +T + +SKPF ++LV + L
Sbjct: 61 GTVVCREIRRE-SGVPIIMLTAKSDTVDVVAGLEAGADDYVSKPFKPKELVARIRTRLRR 119
>gi|239930847|ref|ZP_04687800.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291439218|ref|ZP_06578608.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291342113|gb|EFE69069.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G A + + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDASISEPLARALRREGYEVEVREDGPGALEAGMQGGVDLVVLDLGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 60 GLEVARRLRAEGHTVPLLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|218700689|ref|YP_002408318.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
IAI39]
gi|331653655|ref|ZP_08354656.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli M718]
gi|218370675|emb|CAR18484.1| fused response regulator of ato opeon, in two-component system with
AtoS: response regulator ; sigma54 interaction protein
[Escherichia coli IAI39]
gi|331048504|gb|EGI20580.1| acetoacetate metabolism regulatory protein AtoC
(Ornithine/argininedecarboxylase inhibitor) (Ornithine
decarboxylase antizyme) [Escherichia coli M718]
Length = 461
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|254442742|ref|ZP_05056218.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198257050|gb|EDY81358.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 224
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ + R L GYEV +G + + + + ++L D+++P +DG
Sbjct: 3 KILIVEDDEALARGLRDNFACEGYEVAYAADGDTGLELLLDGGADIVLLDVMLPGLDGYS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ A + ++ +T + KPF +R+L+ V L
Sbjct: 63 ICEAARREGCSMPILMLTAKGQERDIVRGLELGADDYVVKPFSVRELIARVRAFLRR 119
>gi|160895287|ref|ZP_02076058.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
gi|156862980|gb|EDO56411.1| hypothetical protein CLOL250_02846 [Clostridium sp. L2-50]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ L L +GY + NG A ++++E L+L DI+MPEMDGI
Sbjct: 4 ILICDDEKDIVSALKIYLKTSGYNIYEAYNGKEALEQIKEHDIHLVLMDIMMPEMDGITA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E +L V+ +T + ++KPF+ +++ V L
Sbjct: 64 MLKIREET-NLPVILLTAKSEDTDKILGLEVGADDYITKPFNPVEVIARVKSQLRR 118
>gi|27376207|ref|NP_767736.1| phosphate regulon, two-component response regulator [Bradyrhizobium
japonicum USDA 110]
gi|2769532|emb|CAA11074.1| phosphate regulatory protein [Bradyrhizobium japonicum]
gi|27349347|dbj|BAC46361.1| phosphate regulon, two-component response regulator [Bradyrhizobium
japonicum USDA 110]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +I++ ED++ + L L GY+V + G A +++E L++ D ++P +
Sbjct: 1 MGARIMVVEDEEALTELLRYNLEGDGYDVETVMRGDDADTRLKEHIPDLIVLDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF + +L+ V LL
Sbjct: 61 GIELCRRLRTRPETKQLPIIMLTARGEESERVRGLATGADDYIVKPFSVPELLARVKGLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|301630365|ref|XP_002944292.1| PREDICTED: acetoacetate metabolism regulatory protein AtoC-like,
partial [Xenopus (Silurana) tropicalis]
Length = 467
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ + L AL ++G +V + NG A + +E L+++D MP MD
Sbjct: 35 MTHNVLVVDDEPKLCDLLSSALSQSGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 94
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L P L V+ +T ++ V S ++KPF + +L V + L
Sbjct: 95 GPALLAEIKVRYPHLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 154
Query: 121 KN 122
++
Sbjct: 155 RD 156
>gi|291460016|ref|ZP_06599406.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
078 str. F0262]
gi|291417357|gb|EFE91076.1| DNA-binding response regulator DltR [Oribacterium sp. oral taxon
078 str. F0262]
Length = 226
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 60/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L + G+E + ++GA + + LL+ D+++P M+GI
Sbjct: 2 KILVIEDEFLLSESVKSILTEHGFEADTVSDGAEGLIYAKSGAYDLLILDVMLPGMNGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR+ + + ++ +T + + + L+KPF R+L+ VN LL +
Sbjct: 62 LARQLRKERCGMPILMLTARSELLDRVEGLNAGADYYLTKPFDERELMACVNALLRRQ 119
>gi|261254101|ref|ZP_05946674.1| copper-sensing two-component system response regulator CpxR [Vibrio
orientalis CIP 102891]
gi|260937492|gb|EEX93481.1| copper-sensing two-component system response regulator CpxR [Vibrio
orientalis CIP 102891]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+EV NNG + ++ L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLKEVLSFEGFEVSEANNGEEGLALLNDQ-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLRETW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELMARIRAILRR 117
>gi|163790641|ref|ZP_02185069.1| two-component response regulator [Carnobacterium sp. AT7]
gi|159874089|gb|EDP68165.1| two-component response regulator [Carnobacterium sp. AT7]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L ++V +NG A +K +L++ D+++P++ G
Sbjct: 2 KILIVDDEPKILDIVEAYLTIKRFQVFRASNGIEALEKFELVQPNLIVLDLMLPDISGTV 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ + D+ ++ +T + + + KPF ++LV V +L +
Sbjct: 62 ICQKIRK-TSDVPIIMLTAKSTENDILNGLQIGADDYIVKPFSPKELVARVETVLRRSD 119
>gi|153855865|ref|ZP_01996840.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
gi|149751833|gb|EDM61764.1| hypothetical protein DORLON_02862 [Dorea longicatena DSM 13814]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GYEV +G + + +E L + DI+MP MD
Sbjct: 7 MN-HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGVEGLEVIEKEDIHLAIVDIMMPRMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+F++ + ++KPF +L+ VN L
Sbjct: 66 GISMVVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 124
>gi|153953680|ref|YP_001394445.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146346561|gb|EDK33097.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 237
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI + +D+ + + L +GY V NG A + + L++ D+++P++ G
Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ +TG + ++KPF R LV V LL
Sbjct: 70 DICEMLRKR-SKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 126
>gi|118445101|ref|YP_879164.1| two-component response regulator [Clostridium novyi NT]
gi|118135557|gb|ABK62601.1| two-component response regulator [Clostridium novyi NT]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED+ + +F+ L K +EV+ +G KV E +++ DI++P +DG
Sbjct: 4 KHKVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPIVVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + P + ++ +T + KPF+ +L + L+
Sbjct: 64 FKVCEILRKNYPSIGIIMLTALGQDIDKIKGLENGADDYMIKPFNPLELAARITSLIRRM 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|111224670|ref|YP_715464.1| two-component regulatory system response regulator [Frankia alni
ACN14a]
gi|111152202|emb|CAJ63932.1| response regulator in two-component regulatory system with KdpD,
regulation of potassium translocation (OmpR family)
[Frankia alni ACN14a]
Length = 259
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + R + L G+EV + +GA A + P L++ D+ +P++DGI+
Sbjct: 18 RILIVEDEPQLLRAMRINLHSRGHEVRTAVDGAHALREAASHPPDLVVLDLGLPDLDGID 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ ++G + + ++KPF + +L+ + +
Sbjct: 78 VIRGLRG-WTRVPIIVLSGRTSGHDKIAALDAGADDYVTKPFSVEELLARIRAVTRR 133
>gi|301301253|ref|ZP_07207408.1| response regulator receiver domain protein [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|300851129|gb|EFK78858.1| response regulator receiver domain protein [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + L L KAGYEV NNG A D+ + ++ D+++P +DGIE
Sbjct: 3 KVLVVDDEQAITTLLKYNLEKAGYEVKIVNNGNDALDEGLTGKYDFIILDLMLPGIDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T L+KPF R++V + + +
Sbjct: 63 VTKRIRQEKITTYILILTAKDDEYDKIIGLELGADDYLTKPFSPREIVARLKAV-KRR 119
>gi|269797012|ref|YP_003316467.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269099197|gb|ACZ23633.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + + L G+ V NG +E + ++ DI+MP M+G
Sbjct: 2 RILVVDDEVRLVDGVRRGLEAEGFAVDVAANGVDGLWMAQEHRYDAIVLDIMMPGMNGYT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T ++ LSKPF LV + L+
Sbjct: 62 VCERLRAAEDWTPILMLTAKDGEWDQVEALDTGADDFLSKPFSYAVLVARLRSLVRR 118
>gi|229096516|ref|ZP_04227487.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
gi|229102609|ref|ZP_04233313.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
gi|229115490|ref|ZP_04244896.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228667903|gb|EEL23339.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228680836|gb|EEL35009.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-28]
gi|228686722|gb|EEL40629.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ +R F++ L +AG+ V+ + G A + + + L D+++P +D
Sbjct: 4 MS-TILVLEDEMPIRSFIVLNLKRAGFYVLEASTGEEALQILCDHTVDVALLDVMLPGID 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E + + ++ +T ++KPF +L + LL
Sbjct: 63 GFQVCKTIREENKKMGIIMLTARVQDGDVVQGLGIGADDYITKPFSPVELTARIQSLLRR 122
>gi|227551073|ref|ZP_03981122.1| possible response regulator [Enterococcus faecium TX1330]
gi|257896695|ref|ZP_05676348.1| transcriptional regulator [Enterococcus faecium Com12]
gi|227179771|gb|EEI60743.1| possible response regulator [Enterococcus faecium TX1330]
gi|257833260|gb|EEV59681.1| transcriptional regulator [Enterococcus faecium Com12]
Length = 147
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ EDD ++ L +AG+ V++ NG A K+ L++TDI+MP+MD
Sbjct: 18 MN-RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMD 76
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G +L D V+ IT A ++KP + +++ V
Sbjct: 77 GYDLLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPIDVNEMILRVEA 132
>gi|196232874|ref|ZP_03131724.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196223073|gb|EDY17593.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 217
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++R L AL K+GY V +G + ++ DI++P++DG+
Sbjct: 2 RVLLVEDSPRLQRSLGAALRKSGYAVDIAGDGEQGLWLAETNSYDAVVLDIMLPKLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D ++ +T V A L KPF L +L+ V+ L
Sbjct: 62 VVRQLRAKGRDTHILLLTAKDTVDDRVRGLADGADDYLVKPFALEELLARVHALCRR 118
>gi|168182122|ref|ZP_02616786.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237793585|ref|YP_002861137.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182674487|gb|EDT86448.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229261605|gb|ACQ52638.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A K E LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++ + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRKE-SEVPIIMLTAKSSEDSILNGYSIGTDDYITKPFSPKQLVAKVNAVLKR 119
>gi|154687900|ref|YP_001423061.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
gi|154353751|gb|ABS75830.1| two-component response regulator [Bacillus amyloliquefaciens FZB42]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ EDD + + ++L K G+EV + NG A D + + F ++L D+++P++D
Sbjct: 1 MGYKILIVEDDQFISDMVSESLTKEGFEVTAAFNGEEALDILNTQKFEVILLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R + V+ ++ +SKPF + +++ + +
Sbjct: 61 GMECLRMIRSK-SMVPVLIMSAKDEDVDKALGLGLGADDYISKPFSMLEVIARIKATIRR 119
Query: 121 K 121
+
Sbjct: 120 E 120
>gi|148265667|ref|YP_001232373.1| two component, sigma-54 specific, Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146399167|gb|ABQ27800.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 471
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 66/119 (55%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R + + L G+ V + NG A +K++ E F LL+TD+ MP M G+
Sbjct: 4 KRILVVDDEAVIREGMRRILDGGGFTVETFANGYLAIEKLQAEAFDLLITDLKMPGMGGM 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + L P++ V+ ITG+++V + ++KPF +++ +V L K
Sbjct: 64 EVLKSIKVLQPEMPVIIITGYSSVDTAVEVMKNGAVDYIAKPFTPEEIIEKVENALEQK 122
>gi|146339730|ref|YP_001204778.1| putative two-component transcriptional regulator [Bradyrhizobium
sp. ORS278]
gi|146192536|emb|CAL76541.1| putative Two-component transcriptional regulator [Bradyrhizobium
sp. ORS278]
Length = 224
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|116748153|ref|YP_844840.1| two component transcriptional regulator [Syntrophobacter
fumaroxidans MPOB]
gi|116697217|gb|ABK16405.1| two component transcriptional regulator, winged helix family
[Syntrophobacter fumaroxidans MPOB]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDDDD+ L + AG+ V + G A +E L++ D+++P DG E+
Sbjct: 6 VLIVEDDDDILHLLAYNVRAAGFAVFTAQEGYEALRIAKERRPGLIVLDLMIPGADGFEV 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + KPF R+L+ + +L
Sbjct: 66 CRELKRGSDTRGIPVIMLTARGEEVDRIVGLELGADDYVVKPFSPRELILRIRAVLRR 123
>gi|189346808|ref|YP_001943337.1| two component transcriptional regulator, winged helix family
[Chlorobium limicola DSM 245]
gi|189340955|gb|ACD90358.1| two component transcriptional regulator, winged helix family
[Chlorobium limicola DSM 245]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L + + V +G + D + L++ D ++P + GIE
Sbjct: 2 RILVIEDEPGISGFLKEGLEEEYFAVDLAFDGKTGLDMALLNEYDLMIVDWMIPGISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + ++F+T + + KPF +L+ + L N
Sbjct: 62 VCRQVRKAGSSVPILFLTAKDTLEDIVFGLDAGANDYIRKPFAFEELLARIRVQLRRNN 120
>gi|296331198|ref|ZP_06873671.1| two-component response regulator YvrH involved in cell wall
processes (YvrG) [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305675924|ref|YP_003867596.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151649|gb|EFG92525.1| two-component response regulator YvrH involved in cell wall
processes (YvrG) [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305414168|gb|ADM39287.1| two-component response regulator involved in cell wall processes
(paired with YvrG) [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 248
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY ++ + A V+ L++ D++M M
Sbjct: 14 NASILIVDDEKAIVDMIKRVLEKEGYRNLLDAASAEEAIPVVKANKVDLIVLDVMMGGMS 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 74 GFEACTLIRE-YSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKR 132
>gi|291287962|ref|YP_003504778.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
acetiphilus DSM 12809]
gi|290885122|gb|ADD68822.1| multi-sensor signal transduction histidine kinase [Denitrovibrio
acetiphilus DSM 12809]
Length = 537
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 4/121 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63
IL+ +D + R L LG +++ +GA+A + P L+L DI+MP MDG E
Sbjct: 9 ILIVDDSPENIRVLADLLGS-DFDIKIAKDGATALKILASPPYPDLILLDIMMPGMDGYE 67
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ V+FIT + ++KPF+ ++L+ + L +K
Sbjct: 68 VCREIKKSFNTRNIPVIFITAKSLTEDIVLGFELGGVDYITKPFNEKELMARIQTHLELK 127
Query: 122 N 122
+
Sbjct: 128 S 128
>gi|261405111|ref|YP_003241352.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261281574|gb|ACX63545.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++ + + + GY +++ ++G A + ++ L++ D++MP+MDGI+
Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKNHKVDLIILDVMMPQMDGIQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + + ++KPF +LV + L
Sbjct: 65 ACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120
>gi|170758603|ref|YP_001785595.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169405592|gb|ACA54003.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A +K + LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALEKESKFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRRE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|168177609|ref|ZP_02612273.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182670465|gb|EDT82439.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A K E LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRKE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|160884454|ref|ZP_02065457.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
gi|237718085|ref|ZP_04548566.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|260174656|ref|ZP_05761068.1| two-component system response regulator [Bacteroides sp. D2]
gi|293369752|ref|ZP_06616328.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|299145993|ref|ZP_07039061.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
gi|315922919|ref|ZP_07919159.1| two-component system response regulator [Bacteroides sp. D2]
gi|156110193|gb|EDO11938.1| hypothetical protein BACOVA_02438 [Bacteroides ovatus ATCC 8483]
gi|229452506|gb|EEO58297.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|292635174|gb|EFF53690.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|298516484|gb|EFI40365.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
gi|313696794|gb|EFS33629.1| two-component system response regulator [Bacteroides sp. D2]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +LL ED+ + + L + + + + N+G E +L+ D++MP
Sbjct: 1 MSKNKITVLLVEDEQTLAMIIKDTLEENDFIIHTANDGEEGLSLFFELHPDVLVADVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 KMDGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGIQELIIRIKAL 120
Query: 118 L 118
+
Sbjct: 121 M 121
>gi|153940841|ref|YP_001389634.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152936737|gb|ABS42235.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295317726|gb|ADF98103.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A K E LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPDLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRKE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|124024335|ref|YP_001018642.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
gi|123964621|gb|ABM79377.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
Length = 268
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P +D
Sbjct: 1 MKPCILLIEDDQDMRELVSSHLEHNGFDVQKAEDGIKGQALALQYTPDLILLDLMLPNVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMITALGGTKDKVTGFNSGADDYLTKPFDLEELQVRVKALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|29829512|ref|NP_824146.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29606620|dbj|BAC70681.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 245
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ DI++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|306823058|ref|ZP_07456434.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|309801315|ref|ZP_07695444.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
JCVIHMP022]
gi|304553690|gb|EFM41601.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|308222204|gb|EFO78487.1| DNA-binding response regulator MtrA [Bifidobacterium dentium
JCVIHMP022]
Length = 240
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ ++GASA + L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATQLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|326792918|ref|YP_004310739.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326543682|gb|ADZ85541.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD + ++ L K GY + NG A + + ++ L+L DI+MP++D
Sbjct: 1 MTYTVLVCDDDKLIVNSIVLHLQKEGYRTLKAYNGVEALEAIEKQEVHLILMDIMMPQLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + ++ ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 GLSATLKIRQE-KNIPIIILSAKSEDTDKIAGLNLGADDYITKPFNTFELLARVRSQLRR 119
>gi|256545415|ref|ZP_05472777.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Anaerococcus vaginalis ATCC 51170]
gi|256398811|gb|EEU12426.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Anaerococcus vaginalis ATCC 51170]
Length = 237
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + + L K GY V +G D E L+L D+++P++ G +L
Sbjct: 6 ILIIEDEQGISKIIKSYLEKEGYNVFQAFDGKEGLDFFENEQIDLILLDLMIPKISGEDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+ +T + + ++KPF ++L+ + +L
Sbjct: 66 IKEIRNK-SNVPVIMVTAKVSEENIINGLKLGADDYVTKPFSPKELMQRIKTVLRR 120
>gi|227892745|ref|ZP_04010550.1| two component response regulator [Lactobacillus ultunensis DSM
16047]
gi|227865386|gb|EEJ72807.1| two component response regulator [Lactobacillus ultunensis DSM
16047]
Length = 221
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI
Sbjct: 2 RILVAEDEPQLLRVLTAAMKHAGYDVDPVDNGLKAVEHAKESSYDVIILDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + V+ +T A V ++KPF L++L+ +
Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYITKPFSLKELLARLR 113
>gi|297565507|ref|YP_003684479.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296849956|gb|ADH62971.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ L L + GY +G +A R L+L DI +PE+DG+E+
Sbjct: 2 VLVVEDEPEIAEILEGYLRRDGYRTERAADGKAALGLYRAAKPDLVLLDIQLPELDGLEV 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + V+ +T + ++KPF R++V V +L N
Sbjct: 62 LRRIRADG-NTPVILVTARSEDLDKLLGLELGADDYVTKPFSPREVVARVKAVLRRAN 118
>gi|282859093|ref|ZP_06268224.1| response regulator receiver domain protein [Prevotella bivia
JCVIHMP010]
gi|282588123|gb|EFB93297.1| response regulator receiver domain protein [Prevotella bivia
JCVIHMP010]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K ILL EDD+++ L + L GYE C +G + + + F + + D++MP+
Sbjct: 1 MDEKLKILLCEDDENLGTLLSEYLQAKGYEAELCPDGEAGFKAFVKSKFDICVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG LA + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 61 MDGFALATEIRQANAEIPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|260662341|ref|ZP_05863236.1| response regulator [Lactobacillus fermentum 28-3-CHN]
gi|260553032|gb|EEX25975.1| response regulator [Lactobacillus fermentum 28-3-CHN]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILLAED+ + R L+ A+ GY V NG A D + + +++ DI+MP+++
Sbjct: 1 MN--ILLAEDEKQLSRALVTAMQATGYHVDPAYNGQEAVDLAGQRAYDVIILDIMMPKLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ + V+ +T A + L+KPF L++L+ + L
Sbjct: 59 GIEALKQLRQTGNKTYVIMLTAMAEIDDKVTGLEAGADDYLTKPFSLKELLARLRS-LER 117
Query: 121 KN 122
++
Sbjct: 118 RS 119
>gi|255536544|ref|YP_003096915.1| two-component system, transcriptional regulatory protein
[Flavobacteriaceae bacterium 3519-10]
gi|255342740|gb|ACU08853.1| two-component system, transcriptional regulatory protein
[Flavobacteriaceae bacterium 3519-10]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL EDD L L +EV +G + E F + + D++MP+ D
Sbjct: 1 MNNRILLVEDDQSFGAVLKDYLSINNFEVTLATDGEQGLKEFTENEFDICIFDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA +D + ++F+T ++KPF L+ ++ +L
Sbjct: 61 GFSLAEDVKRIDKNTPIIFLTARNMREDILKGYQLGADDYITKPFDTELLLYKIKAILQR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|256824718|ref|YP_003148678.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
gi|256688111|gb|ACV05913.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + L L K G+ V +C +G A R L+L D+++P DG+
Sbjct: 15 HVLVVDDDSALAEMLGIVLTKEGWSVTTCGDGGRALTAFRAVNPDLVLLDVMLPGKDGMS 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T + KPF ++L+ +
Sbjct: 75 VCREIRAE-SGVPIIMLTARTDTHDVVTGLEAGADDYVQKPFRPQELLARTRARMRR 130
>gi|226324729|ref|ZP_03800247.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
gi|225207177|gb|EEG89531.1| hypothetical protein COPCOM_02515 [Coprococcus comes ATCC 27758]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GYEV +G + + +E L + DI+MP MD
Sbjct: 3 MN-HVLVVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLEVIEKEEIHLAIVDIMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 62 GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELLARVNSQLRR 120
>gi|119896995|ref|YP_932208.1| DNA-binding response regulator CreB [Azoarcus sp. BH72]
gi|119669408|emb|CAL93321.1| two-component system regulatory protein [Azoarcus sp. BH72]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEM 59
M+++IL+ +D+ + L AL GYE G A +R ++L++ D+ +P+
Sbjct: 1 MSRRILIVDDEPAIADMLAYALRTEGYEPDCVGLGGDALAALRGGADYALVILDVGLPDQ 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ R D+ V+F+T + + KPF R++ + V +L
Sbjct: 61 SGFDVCRALRRE-SDVPVIFLTARSDEVDRIVGLELGADDYVPKPFSPREVASRVRAILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|115359360|ref|YP_776498.1| two component transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|170698563|ref|ZP_02889632.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|171317335|ref|ZP_02906530.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|172064153|ref|YP_001811804.1| two component transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|115284648|gb|ABI90164.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria AMMD]
gi|170136497|gb|EDT04756.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria IOP40-10]
gi|171097476|gb|EDT42315.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MEX-5]
gi|171996670|gb|ACB67588.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria MC40-6]
Length = 246
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLEDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLTLCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|298479786|ref|ZP_06997986.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298274176|gb|EFI15737.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1342
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G
Sbjct: 1090 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R + V+ +T A ++KPF+++ L N L+
Sbjct: 1149 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVN 1208
Query: 120 IK 121
+
Sbjct: 1209 GR 1210
>gi|326777052|ref|ZP_08236317.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|326657385|gb|EGE42231.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G + +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|294805707|ref|ZP_06764586.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|294447030|gb|EFG15618.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 1333
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G
Sbjct: 1081 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1139
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R + V+ +T A ++KPF+++ L N L+
Sbjct: 1140 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVN 1199
Query: 120 IK 121
+
Sbjct: 1200 GR 1201
>gi|291514656|emb|CBK63866.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Alistipes shahii WAL
8301]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +D+ D+ F+ L + GYEV + NGA A E L+L D++MP MD
Sbjct: 1 MSHRILLVDDEVDILEFVRYNLVREGYEVFTAENGAEALKVAAECRPHLILLDMMMPVMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + R D V+F++ L+KP ++ LV+ V +L
Sbjct: 61 GAQTCRAIRRNPVLKDTMVVFLSALGEEGQQLAGFDVGADDYLTKPIKMKLLVSRVQAIL 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|237714770|ref|ZP_04545251.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262406954|ref|ZP_06083503.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|229445095|gb|EEO50886.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262355657|gb|EEZ04748.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
Length = 1342
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED++++R L++ K Y V +G ++K +E ++L+DI+MP+M G
Sbjct: 1090 SSKILIVEDNEELRELLVRLFSKV-YSVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R + V+ +T A ++KPF+++ L N L+
Sbjct: 1149 IEMCRMIKSNFETSHIPVILLTAQTAEEFTIQGLKMGADDYITKPFNVKHLFMRCNNLVN 1208
Query: 120 IK 121
+
Sbjct: 1209 GR 1210
>gi|19551649|ref|NP_599651.1| two-component system, response regulators [Corynebacterium
glutamicum ATCC 13032]
gi|62389304|ref|YP_224706.1| two component response regulator [Corynebacterium glutamicum ATCC
13032]
gi|21323169|dbj|BAB97797.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
gi|41324638|emb|CAF19120.1| putative two component response regulator [Corynebacterium
glutamicum ATCC 13032]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + L L K G++ + +G +A + ++L D+++P M
Sbjct: 1 MT-RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKELRSV-STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|319898247|ref|YP_004158340.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
gi|319402211|emb|CBI75742.1| transcriptional regulator BatR [Bartonella clarridgeiae 73]
Length = 240
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDSNILTSLSFALETEGYRVESYTDGSAALKNLTVNPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|300866717|ref|ZP_07111401.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
gi|300335317|emb|CBN56561.1| Response regulator receiver domain protein [Oscillatoria sp. PCC
6506]
Length = 401
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L K+G++V+ NG SA ++ +L+L D++MP +DG E
Sbjct: 11 ILIVDDNQNNLDVLFDLLKKSGFKVLVALNGESAIKQIERIHPTLILLDVMMPGIDGFET 70
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR D+ V+F+T + ++KPF ++++ +N LTI+N
Sbjct: 71 CRRLKTNPTTQDIPVIFMTALSETVNKVQGFQVGAVDYITKPFQYEEVLSRLNTHLTIRN 130
>gi|298384668|ref|ZP_06994228.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 1_1_14]
gi|298262947|gb|EFI05811.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 1_1_14]
Length = 1420
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L + Y V+ NG A + P +++D++MP MDGIEL
Sbjct: 1169 ILVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIEL 1227
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR E + + +T + +S + L KPF L+ + +L +
Sbjct: 1228 SRRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENR 1286
>gi|293376504|ref|ZP_06622732.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
gi|292644730|gb|EFF62812.1| putative regulatory protein VanR [Turicibacter sanguinis PC909]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
+IL+ +DD + + AL G+E++ C++G A +K+ E SL++ DI+MP+MDG+
Sbjct: 3 RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL RR + ++F++ + + KPF + +LV V L +
Sbjct: 63 ELCRRVRDQLK-APIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRRE 120
>gi|260642573|ref|ZP_05416441.2| two-component system sensor histidine kinase/response [Bacteroides
finegoldii DSM 17565]
gi|260621480|gb|EEX44351.1| two-component system sensor histidine kinase/response [Bacteroides
finegoldii DSM 17565]
Length = 1353
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + ++ NG A +K++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNILEAGNGEEALEKLKGNEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + P + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIPTCHIPVIMLSAKSETKDQMEGLQMGADDYIPKPFSLSILTTKIQNMMRTR 1222
>gi|220919853|ref|YP_002495156.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
gi|219952273|gb|ACL62664.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +DD + + + L GY V S +D +R E F ++ D+++P+ D
Sbjct: 1 MAERLLIIDDDRRLAAMVSEYLSAEGYAVASRFTAREGHDALRRERFDAVILDVMLPDCD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + ++ +T L KPF+ R+L+ + LL
Sbjct: 61 GFELCRQIR-THSGVPILMLTAKGDDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|207724862|ref|YP_002255259.1| two component response regulator protein [Ralstonia solanacearum
MolK2]
gi|206590087|emb|CAQ37048.1| two component response regulator protein [Ralstonia solanacearum
MolK2]
Length = 245
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++R L + L + G+ V ++G ++ E +L++ D++MP++DG+
Sbjct: 5 KILVVDDDVELRDLLREYLSQQGFAVSVMHDGDGLAARLERERPALVVLDLMMPKVDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D+ V+ +T L KPF R+L+ +N +L +
Sbjct: 65 ALRDLRARNDDMPVILLTARGDEIDRIIGLEIGADDYLGKPFSPRELLARINAVLRRR 122
>gi|189348733|ref|YP_001941929.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
gi|221215703|ref|ZP_03588664.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD1]
gi|189338871|dbj|BAG47939.1| OmpR family two-component system response regulator [Burkholderia
multivorans ATCC 17616]
gi|221164405|gb|EED96890.1| transcriptional regulatory protein ResD [Burkholderia multivorans
CGD1]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D+ L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAQGLRLLEQGGWDALILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 65 EICRRARAMARYTPIIITSARSSEVHRILGLEIGADDYLAKPFSVLELVARVKALLRR 122
>gi|154493998|ref|ZP_02033318.1| hypothetical protein PARMER_03343 [Parabacteroides merdae ATCC
43184]
gi|218258154|ref|ZP_03474556.1| hypothetical protein PRABACTJOHN_00210 [Parabacteroides johnsonii
DSM 18315]
gi|154086258|gb|EDN85303.1| hypothetical protein PARMER_03343 [Parabacteroides merdae ATCC
43184]
gi|218225747|gb|EEC98397.1| hypothetical protein PRABACTJOHN_00210 [Parabacteroides johnsonii
DSM 18315]
Length = 243
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI EDD+++ L + L GY ++G + Y + + L + D++MP+ DG
Sbjct: 6 KIFFCEDDENLGMLLREYLQAKGYVTDLFSDGEAGYKGFTKGKYDLCVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ ++PD+ V+F+T + L+KPF + +L+ + +L
Sbjct: 66 LAQEIRSINPDIPVIFLTAKTMKEDILEGFKIGADDYLTKPFSMEELLLRIEAILRR 122
>gi|330983029|gb|EGH81132.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 124
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ D+ + LG GY V +G S E + L++ DI++P +DG
Sbjct: 2 RILLVEDNRDILANMADYLGMKGYTVDCAQDGLSGLHLAATEHYDLIVLDIMLPGIDGYT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R E D V+ +T + L KPF L +L + +L
Sbjct: 62 LCKRLREDARRDTPVIMLTARDQLDDRLQGFRSGADDYLLKPFALSELAARIEAVLRR 119
>gi|328946836|gb|EGG40973.1| DNA-binding response regulator [Streptococcus sanguinis SK1087]
Length = 234
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ GY V + +G A D +E + L++ DI+MP GIE
Sbjct: 3 KILLAEDEQQLSRVLETAMIHEGYHVDTAFDGQEAVDLAKENAYDLMILDIMMPVKTGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + V L+KPF L++L+ + ++ +
Sbjct: 63 ALKEIRQTGNTTHVIMLTAMSEVDDKVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 119
>gi|330806958|ref|YP_004351420.1| response regulator [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375066|gb|AEA66416.1| Putative response regulator [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 246
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFVSKGYRARTVPNTEQMDRLLAREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + + ++ +T L+KPF+ +L+ V +L ++
Sbjct: 71 TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130
>gi|303258341|ref|ZP_07344344.1| DNA-binding response regulator ColR [Burkholderiales bacterium
1_1_47]
gi|330999877|ref|ZP_08323578.1| response regulator receiver domain protein [Parasutterella
excrementihominis YIT 11859]
gi|302858787|gb|EFL81875.1| DNA-binding response regulator ColR [Burkholderiales bacterium
1_1_47]
gi|329573562|gb|EGG55164.1| response regulator receiver domain protein [Parasutterella
excrementihominis YIT 11859]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++D+R L++ L Y+ + ++G A + L++ DI++P MDG+
Sbjct: 3 TILIVEDNEDIRLNLVEYLESKNYQTDNTDDGLKALALTIVNKYDLIVLDIMIPGMDGLR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R ++ ++ + + + KPF L +L+ + +L +
Sbjct: 63 LCRELRSRGNTTPIIILSAKDSTDDRIMGLSEGADDYIVKPFSLAELLLRIQAVLRRSS 121
>gi|270264908|ref|ZP_06193172.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270041206|gb|EFA14306.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + L ED+ + LI L G++V G A + + +L++ D+ +P+++
Sbjct: 1 MKPTLWLVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALVILDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G EL RR DL ++F+T + ++KPF R++ V +
Sbjct: 61 GFELCRRLLSQSADLPILFLTARSDEVDRLIGLEIGADDYVAKPFSPREVSARVRTI 117
>gi|261406531|ref|YP_003242772.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|329926951|ref|ZP_08281351.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
HGF5]
gi|261282994|gb|ACX64965.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
gi|328938781|gb|EGG35157.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
HGF5]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + + G+ V C+ G E +SL++ D+ +P M+
Sbjct: 1 MATRILIIEDETTIAQLERDYFELNGFAVDLCHTGDEGLKLALNEDYSLIIVDLQLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + ++ ++ ++ + ++KPF +LV L
Sbjct: 61 GYELCSHIRK-NKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMR 119
>gi|329766938|ref|ZP_08258466.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
gi|328837663|gb|EGF87288.1| hypothetical protein HMPREF0428_00163 [Gemella haemolysans M341]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D++ +R+ L+ L K GY V +NG ++++ +S +L D+ +P ++
Sbjct: 1 MAERILIVDDEERIRKLLVMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + V+ ++ A + + KPF R+L+ +N +L
Sbjct: 61 GKSILSELRK-TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119
>gi|258591620|emb|CBE67921.1| putative Nitrogen assimilation transcription regulatory protein
(ntrC)(synonyms:glnT, glnG) [NC10 bacterium 'Dutch
sediment']
Length = 487
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D++ +R L KAL + GY+VV +G + + L+L DI MP +G
Sbjct: 4 TRHILVVDDEESIRWALRKALEREGYQVVLAADGVEGLARATDPSIDLVLMDIKMPGAEG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E R E P+L V+ +T F + + ++KPF +L V R+ I+
Sbjct: 64 LETLSRIKETRPELPVIIMTAFGTLQAAVQAMKRGAYDYITKPFDFGELTILVQRVFEIR 123
>gi|256821208|ref|YP_003142407.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
gi|256799188|gb|ACV29842.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD+ + + L Y + + A ++E+ F L + DI++P +
Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKRATSSEQALKYIKEKEFDLAILDIMLPGEN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + E + ++ +T + ++KPF +LV V L
Sbjct: 61 GYYICAKIRESY-NYPIIMLTAKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|225405400|ref|ZP_03760589.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
DSM 15981]
gi|225043102|gb|EEG53348.1| hypothetical protein CLOSTASPAR_04620 [Clostridium asparagiforme
DSM 15981]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ EDD ++ + L GY + NGA A + ++L D+ +P+M
Sbjct: 1 MNKPEILIVEDDKAIKNLISTTLELEGYRYHTAENGAQAILSAATQQPDIMLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ + + ++ I+ + ++ L+KPF + +L + L
Sbjct: 61 DGVQVIAKVR-TWSQMPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELTARLRATLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|223983749|ref|ZP_03633920.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
12042]
gi|223964295|gb|EEF68636.1| hypothetical protein HOLDEFILI_01201 [Holdemania filiformis DSM
12042]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D++ + L +AGY +V + G ++L D+++P++DG
Sbjct: 2 KTILIVDDNESICNILYHYGKEAGYTMVIAHTGQEGLTYFTNYKPDVILLDVMLPDIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ + ++ IT A + KPF ++++ + +L
Sbjct: 62 EVCQCIRKV-SRVPILMITAKTADQDRVMGLDIGADDYILKPFSCQEVMARIRAVLRR 118
>gi|126652243|ref|ZP_01724422.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
gi|126590975|gb|EAZ85087.1| hypothetical protein BB14905_22493 [Bacillus sp. B14905]
Length = 234
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ EDD + + L YE +G A K + + D+ +P++D
Sbjct: 1 MNKRILVVEDDVAIANLIKMTLATQQYEFDIAQDGNRALQKAITMKPDVYILDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL + ++ ++ ++ ++KPF + +L+ + L
Sbjct: 61 GVELITKIRS-WTQTPIIVVSARGEEYDKINALDAGADDYVTKPFSVEELLARIRVALRR 119
>gi|116511831|ref|YP_809047.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
SK11]
gi|116107485|gb|ABJ72625.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactococcus lactis subsp. cremoris SK11]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
M +L+ ED+ + ++ K L Y+V + +G +A + + ++L D ++P+
Sbjct: 1 MTYHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+DG+ + RR ++ P+ ++F+T + ++KPF + +L+ +
Sbjct: 61 LDGLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLR 117
>gi|125624324|ref|YP_001032807.1| two-component system regulator llrE [Lactococcus lactis subsp.
cremoris MG1363]
gi|7669466|gb|AAF66142.1| putative response regulator [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493132|emb|CAL98096.1| two-component system regulator llrE [Lactococcus lactis subsp.
cremoris MG1363]
gi|300071107|gb|ADJ60507.1| two-component system regulator llrE [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
M +L+ ED+ + ++ K L Y+V + +G +A + + ++L D ++P+
Sbjct: 1 MTYHVLIVEDEPSISDYVKKELVFEDYQVSTAFDGLAALEVFEQAKPAVDVVLLDWMIPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+DG+ + RR ++ P+ ++F+T + ++KPF + +L+ +
Sbjct: 61 LDGLTVLRRMKKIQPNTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLR 117
>gi|150017343|ref|YP_001309597.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903808|gb|ABR34641.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 219
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +R F+ L K YEV+ NG A ++L D+++P +DG
Sbjct: 2 ETILVVEDELSIRSFICINLRKKKYEVLEAENGEEALSIFNNRKIDIVLLDLMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ + ++ +T + L KPF + +L + L
Sbjct: 62 EVCQKIRDISQSVGIIMLTARSQEEDRVKGLVEGADDYLLKPFSMVELEARIISLARR 119
>gi|332799978|ref|YP_004461477.1| winged helix family two component transcriptional regulator
[Tepidanaerobacter sp. Re1]
gi|332697713|gb|AEE92170.1| two component transcriptional regulator, winged helix family
[Tepidanaerobacter sp. Re1]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + L K Y V + ++G S D + L++ DI++P+M+GI
Sbjct: 2 RILIVEDELHLAEALTQILKKNNYTVDAVHDGESGLDNALSGIYDLIILDIMLPKMNGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T ++ L KPF +L+ + L K
Sbjct: 62 ILKHIRKQEIATPVILLTAKGEISDKVMGLDSGADDYLPKPFATEELLARIRALSRRK 119
>gi|330465920|ref|YP_004403663.1| response regulator receiver [Verrucosispora maris AB-18-032]
gi|328808891|gb|AEB43063.1| response regulator receiver [Verrucosispora maris AB-18-032]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ +G A R+ ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFMPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVARAIRAE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRR 119
>gi|302387594|ref|YP_003823416.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302198222|gb|ADL05793.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 19/116 (16%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + + + +L + G EV +G A + +++ + ++L D+++P+ DG E+
Sbjct: 4 VLVVDDEKLIVKGMRFSLEQDGMEVDCAYDGEEAINLAKQKEYDVVLLDVMLPKYDGYEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ +T ++KPF++ ++ + ++
Sbjct: 64 CQAIRE-FSEMPIIMLTAKGNDMDKILGLEYGADDYITKPFNILEVKARIKAIMRR 118
>gi|239626813|ref|ZP_04669844.1| two-component response regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239516959|gb|EEQ56825.1| two-component response regulator [Clostridiales bacterium
1_7_47FAA]
Length = 243
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL A+DD ++R + L GY+VV NG A + ++ F L++ D++MP +G
Sbjct: 16 KRKILFADDDPEIREVVRILLESEGYQVVEAENGEQA-ASMADDTFDLIILDVMMPGRNG 74
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++F+T + LSKPF +L V ++
Sbjct: 75 FSACAEIRRRL-NTPILFLTARTQDSDKTMGFGAGGDDYLSKPFSYAELAARVKAMIRRY 133
Query: 122 N 122
+
Sbjct: 134 H 134
>gi|150003546|ref|YP_001298290.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931970|gb|ABR38668.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1378
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1116 KYKLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNG 1174
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1175 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1234
Query: 120 IK 121
+
Sbjct: 1235 SR 1236
>gi|332655316|ref|ZP_08421056.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
gi|332515821|gb|EGJ45431.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+L+ ED++++R F++ L +AGY+ + G A ++E P + L DI++P +DG
Sbjct: 2 RKVLVLEDEENIRSFVVINLKRAGYQTIEAATGEDALVALKENPGIKVALLDIMLPGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR +D + ++ +T ++KPF +L V+ L
Sbjct: 62 FEVCRRIRAMDNKIGIIMLTARTQEMDKVTGLMTGADDYVTKPFSPAELTARVDALFRR 120
>gi|307718269|ref|YP_003873801.1| two-component regulatory system response regulator [Spirochaeta
thermophila DSM 6192]
gi|306531994|gb|ADN01528.1| two-component regulatory system response regulator [Spirochaeta
thermophila DSM 6192]
Length = 431
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D + L L + Y V +G A ++ + PF L+L DI+MPEMDG
Sbjct: 8 KHRILIVDDTPPNIQLLGSILQEH-YIVSFAESGPEALSRLEKTPFDLILLDIMMPEMDG 66
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR D+ ++F++ A + KP+ R+L+ V L+
Sbjct: 67 FEVCRRVRSNPKTKDIPIIFLSAKADRESVMKGLELGGQDYVVKPYDPRELLKRVQTQLS 126
Query: 120 IK 121
++
Sbjct: 127 LR 128
>gi|288937248|ref|YP_003441307.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|290512652|ref|ZP_06552018.1| two-component system, OmpR family, catabolic regulation response
regulator CreB [Klebsiella sp. 1_1_55]
gi|288891957|gb|ADC60275.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|289774993|gb|EFD82995.1| two-component system, OmpR family, catabolic regulation response
regulator CreB [Klebsiella sp. 1_1_55]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I L ED+ + L+ L + G++V G A + + + + D+ +P++ G E
Sbjct: 5 RIWLVEDEQSIADTLVYPLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P L V+F+T + ++KPF R++ V +L
Sbjct: 65 LCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121
>gi|206970631|ref|ZP_03231583.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|206734267|gb|EDZ51437.1| DNA-binding response regulator [Bacillus cereus AH1134]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL
Sbjct: 6 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 66 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 120
>gi|308070222|ref|YP_003871827.1| transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
gi|305859501|gb|ADM71289.1| Transcriptional regulatory protein resD [Paenibacillus polymyxa
E681]
Length = 266
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ +DD + + + + L K YEV S ++G + + +R L+ DI+MP +D
Sbjct: 31 MT-KIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGID 89
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + E ++ ++ I+ + L+KPF+ R+LV V +L +
Sbjct: 90 GLSLLTQLREFT-EMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 148
>gi|255656708|ref|ZP_05402117.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296452468|ref|ZP_06894168.1| response regulator [Clostridium difficile NAP08]
gi|296877817|ref|ZP_06901842.1| response regulator [Clostridium difficile NAP07]
gi|296258700|gb|EFH05595.1| response regulator [Clostridium difficile NAP08]
gi|296431189|gb|EFH17011.1| response regulator [Clostridium difficile NAP07]
Length = 234
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+ KIL+A+D+ ++R + L GYEV+ NG A + L++ D+VM
Sbjct: 1 MNKEIPKKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLADS-TIDLIILDVVM 59
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P G E ++F+T + + LSKPF +L++ V
Sbjct: 60 PVKTGFVACSEIREKT-TAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKS 118
Query: 117 LLTI 120
LL
Sbjct: 119 LLRR 122
>gi|225571191|ref|ZP_03780189.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
15053]
gi|225160022|gb|EEG72641.1| hypothetical protein CLOHYLEM_07279 [Clostridium hylemonae DSM
15053]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y+V C G A D + L + DI++P++D
Sbjct: 1 MN--ILVVDDEKEIADVIELYLQSDQYDVHKCYTGQEALDYIGSMKIDLAILDIMLPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ V+ +T + KPF+ +LV V L
Sbjct: 59 GFQILKQIRGKY-TFPVIMLTAKTEYMDKITGLTMGADDYIPKPFNPLELVARVKAQLRR 117
>gi|70733782|ref|YP_257422.1| osmolarity response regulator [Pseudomonas fluorescens Pf-5]
gi|68348081|gb|AAY95687.1| DNA-binding response regulator OmpR [Pseudomonas fluorescens Pf-5]
Length = 246
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + + ++ +T L+KPF+ +L+ V +L ++
Sbjct: 71 TACRRLRSANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQS 130
>gi|319652565|ref|ZP_08006680.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
gi|317395819|gb|EFV76542.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ DMR+ L GY +++ +G A + ++ ++L DI MPE++G+
Sbjct: 2 KKILIIDDEADMRKLLADYFEVNGYHIMTAKDGNEAVRQAEKQ-PDIILLDINMPEINGL 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R+ ++F+T A + KPF + +L V+ L +
Sbjct: 61 DVCRKIRS-YVSCPILFLTARVEDADKISGFQAGGDDYIQKPFSIHELGARVDAHLRRE 118
>gi|298293994|ref|YP_003695933.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296930505|gb|ADH91314.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L GY V S G A ++RE LL+ D ++P +
Sbjct: 1 MPTNILIVEDEEPLTLLLRYNLESEGYAVDSVGRGDEAETRLRESVPDLLILDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR + ++ +T A + KPF + +LV V LL
Sbjct: 61 GIELCRRLRARPETERMPILMLTARGEETERVRGLATGADDYVVKPFSVPELVARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|291570098|dbj|BAI92370.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
Length = 443
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + G ++ NG A + L+L DIVMP+MDG E
Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ V+ +T A + ++KPF +++ VN L I+
Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKIR 127
>gi|284052047|ref|ZP_06382257.1| two-component response regulator [Arthrospira platensis str.
Paraca]
gi|291566535|dbj|BAI88807.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AED+ + FL K L +G+ N+G D+ + F LL+ D+ +P+ D
Sbjct: 1 MS-RILIAEDEPRIAAFLEKGLRASGFTTAIANSGQDVLDQAGGQNFDLLILDLGLPDRD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + L ++ +T ++ ++KPF +L+ V L
Sbjct: 60 GFQILKELRGQGETLPIIILTARDDLSDKVAGLEAGADDYVTKPFRFAELLARVRARLRN 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|220909969|ref|YP_002485280.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
gi|219866580|gb|ACL46919.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
Length = 1002
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ DMR ++ + L + ++V + NGA A ++++++ L+LTD++MPEMDG +
Sbjct: 647 RILLVDDNADMRDYVGRLLSER-WQVETAANGAIALERLQQDLPDLVLTDVMMPEMDGFQ 705
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + L + V+ ++ A A L KPF R+L+ V L +
Sbjct: 706 LLQVLRSDPLTQSIPVILLSARAGEVATIAGLAAGADDYLIKPFSARELIARVETQLQM 764
>gi|169350865|ref|ZP_02867803.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
gi|169292451|gb|EDS74584.1| hypothetical protein CLOSPI_01639 [Clostridium spiroforme DSM 1552]
Length = 216
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ L L A YE +G S +K + + L+L D+++P ++GIE+
Sbjct: 2 ILIIEDEKNISNLLKLELTHANYECDQAFDGESGLNKALNQDYELILLDLMLPRINGIEV 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L ++ +T V + L+KPF + +L+ +N LL
Sbjct: 62 CRQLR-LKKQTPIIMLTARDEVMDKVNGLQVGADDYLAKPFAMEELLARINALLRR 116
>gi|150002623|ref|YP_001297367.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
gi|237712435|ref|ZP_04542916.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|237726625|ref|ZP_04557106.1| two-component system response regulator [Bacteroides sp. D4]
gi|254881412|ref|ZP_05254122.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|265752137|ref|ZP_06087930.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
gi|294776097|ref|ZP_06741590.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|319642799|ref|ZP_07997437.1| transcriptional regulatory protein rprY [Bacteroides sp. 3_1_40A]
gi|149931047|gb|ABR37745.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
gi|229435151|gb|EEO45228.1| two-component system response regulator [Bacteroides dorei
5_1_36/D4]
gi|229453756|gb|EEO59477.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|254834205|gb|EET14514.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|263236929|gb|EEZ22399.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
gi|294450048|gb|EFG18555.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|317385543|gb|EFV66484.1| transcriptional regulatory protein rprY [Bacteroides sp. 3_1_40A]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY C +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDLCVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator
[Prochlorococcus marinus str. MIT 9312]
gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family
[Prochlorococcus marinus str. MIT 9312]
Length = 242
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+E+ +G ++K + L+++D++MP +G
Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDVMMPRANGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T + +SKPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINRQ 135
>gi|333024364|ref|ZP_08452428.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
gi|332744216|gb|EGJ74657.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
Length = 219
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + R L LG GY V ++G + E + L++ DI++P M+G
Sbjct: 2 RLLIVEDERRLARSLALGLGAEGYAVDIAHDGTEGLRRATEGGYDLIVLDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D ++ +T + L+KPF L V LL +
Sbjct: 62 VCAALRAAGDDTPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLRARVKALLRRR 119
>gi|328544892|ref|YP_004305001.1| phosphate regulon transcriptional regulatory protein [polymorphum
gilvum SL003B-26A1]
gi|326414634|gb|ADZ71697.1| Phosphate regulon transcriptional regulatory protein [Polymorphum
gilvum SL003B-26A1]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ + L L GY V +C G A ++RE LLL D ++P + GIE
Sbjct: 3 KVLIVEDEEPLSLLLRYNLEAEGYAVEACERGDEAEIRLRESQPDLLLLDWMLPGLSGIE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A A + KPF + +L+ V +L
Sbjct: 63 LCRRLRARAETERLPVIMLTARGEEAERIRGLATGADDYVVKPFSVPELMARVRAILRR 121
>gi|311104194|ref|YP_003977047.1| transcriptional regulator OmpR 1 [Achromobacter xylosoxidans A8]
gi|310758883|gb|ADP14332.1| transcriptional regulatory protein OmpR 1 [Achromobacter
xylosoxidans A8]
Length = 236
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + ++ LL+ D ++P DG +
Sbjct: 10 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDATDLSSRITRYAPDLLVLDRMLPGGDGAD 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+ +T + KPF R+L+ + +L K
Sbjct: 70 ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127
>gi|307565274|ref|ZP_07627767.1| response regulator receiver domain protein [Prevotella amnii CRIS
21A-A]
gi|307345943|gb|EFN91287.1| response regulator receiver domain protein [Prevotella amnii CRIS
21A-A]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K ILL EDD+++ L + L GYE C +G + + + F + + D++MP+
Sbjct: 1 MDEKLKILLCEDDENLGTLLSEYLQAKGYEAELCPDGEAGFKAFLKSKFDICVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG LA +++ ++ ++F+T + ++KPF + +LV + +L
Sbjct: 61 MDGFALATEIRQVNAEIPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|326204759|ref|ZP_08194614.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325985130|gb|EGD45971.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R L + G++V + NG ++ L+L D+++P+ G
Sbjct: 2 KKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + + ++ V+ ++ ++KPF R+L+ + +L
Sbjct: 62 DLCKEIVKQ-SNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRR 118
>gi|322419001|ref|YP_004198224.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320125388|gb|ADW12948.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 226
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ ED+ D+ + L K G+ ++ +G++ + R+ L+L D+++P M G
Sbjct: 2 QTVLIIEDETDLAELIAYHLEKEGFRILVAGDGSAGLQEARKAKPDLILLDLMLPGMMGT 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + ++ +T + KPF R+L+ V +L
Sbjct: 62 EVCRILKGSDQTASIPIIMLTAKGEEIDRVVGFEVGADDYVVKPFSTRELMLRVRAVLRR 121
Query: 121 KN 122
+
Sbjct: 122 SS 123
>gi|169333828|ref|ZP_02861021.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
17244]
gi|169259393|gb|EDS73359.1| hypothetical protein ANASTE_00214 [Anaerofustis stercorihominis DSM
17244]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL ED+ + RFL L GY + G K ++ + L++ D+++P +
Sbjct: 1 MKE-ILLVEDELKIARFLQLELTHEGYNLTVATEGRDGLLKAMDDKYDLIILDLMLPNLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR ++ +T + V+ ++KPF + +L+ + ++L+
Sbjct: 60 GIEICRRLRANKITTPIIMLTAKSDVSDKVMGLDIGADDYMTKPFAIEELLARIRKILSR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|168180761|ref|ZP_02615425.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182668592|gb|EDT80571.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQSENYHMVIMDIMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 61 DGIEAMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|222054470|ref|YP_002536832.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
gi|221563759|gb|ACM19731.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. FRC-32]
Length = 456
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +IL+ +D+ +R L + L K GYEV + NG A VREE L+L DI +P +
Sbjct: 1 MRKTRILVVDDEHLIRWSLEQNLKKQGYEVFTAGNGEDALRLVREEQPELVLLDIQLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ + E D ++ V+ +T + ++ ++KPF+L +L + + L
Sbjct: 61 GGLEVLEKVKEFDDEIVVIMLTAHGGLETAVNTMRMGAYDYINKPFNLDELSIVIKKALE 120
>gi|28211158|ref|NP_782102.1| transcriptional activator protein [Clostridium tetani E88]
gi|28203598|gb|AAO36039.1| transcriptional activator protein [Clostridium tetani E88]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + + + L +GY V NG A + E + L++ DI +P MDG
Sbjct: 2 KLLIVEDEKQLLESIAEGLRLSGYVVDIAENGKEAEEMCFVEDYDLVILDINLPLMDGFS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + + ++ +T + V + KPFH +L + LL K
Sbjct: 62 VLKSIREHNKTVNIIMLTAKSDVEDRVLGLDLGANDYMIKPFHFEELEARIRSLLRRK 119
>gi|260062158|ref|YP_003195238.1| C4-dicarboxylate transport transcriptional regulatory protein
[Robiginitalea biformata HTCC2501]
gi|88783720|gb|EAR14891.1| C4-dicarboxylate transport transcriptional regulatory protein
[Robiginitalea biformata HTCC2501]
Length = 389
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ ED+ +RR L+K L + Y+V NGA +K++++ + L+L DI MP+MDG
Sbjct: 5 RILVIEDEAAIRRVLVKILTEENDAYQVEEAENGAEGLEKLKKQEYDLVLCDIKMPKMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + P+ + I+G + + +SKP L L+ V L K
Sbjct: 65 VEVLEAGRKSKPETPFIMISGHGDLDTAVQTMRMGAFDYISKPPDLNRLLTTVRNALDRK 124
>gi|326385473|ref|ZP_08207112.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326210012|gb|EGD60790.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL EDD +R +AL GY+V + GA + + +P L++ DI++P +G
Sbjct: 3 THSILFVEDDPALRLLTARALRDYGYDVRTAATGAEMWAMLETQPADLIVLDIMLPGGNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + ++ V+F++ + L KPF R+L + +
Sbjct: 63 LELLRRLRKQ-SEVPVIFVSARGSEEDRVLGLELGADDYLPKPFGTRELAARIAAVFRR 120
>gi|300770785|ref|ZP_07080663.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300762342|gb|EFK59160.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L + GY+V + +NG A + +E L++ D++MP+MDG
Sbjct: 5 KQKILVVDDEQDIVELIAYNLKREGYQVFTASNGKEAIAQAKEVNPDLIILDVMMPQMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + ++F+T + ++KP R L++ +N +L
Sbjct: 65 IEACRLMRAMPEFKHTFMVFLTARSEEYSEIAGFHVGADDYIAKPIKPRALMSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|261418005|ref|YP_003251687.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|297529673|ref|YP_003670948.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|319767181|ref|YP_004132682.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
gi|261374462|gb|ACX77205.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC61]
gi|297252925|gb|ADI26371.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|317112047|gb|ADU94539.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y412MC52]
Length = 224
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL ED+ + RFL L G++V C +G + E + L+L D+++P ++
Sbjct: 1 MNGRILLIEDEAGLARFLELDLKHEGFDVHVCADGREGLELALSEQWDLILLDVMLPSLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR +M IT +V + KPF + +L+ + L
Sbjct: 61 GMEVCRRIRAAKS-TPIMMITARDSVFDRVMGLDNGADDYIVKPFAIEELLARIRALFRR 119
>gi|171058342|ref|YP_001790691.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
gi|170775787|gb|ACB33926.1| two component transcriptional regulator, winged helix family
[Leptothrix cholodnii SP-6]
Length = 245
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + L AGY+ + + A++ VR+ L++ D ++P G+
Sbjct: 3 RILVVEDEPAIAELISMNLRHAGYDPHTVGSAGEAHEAVRDALPDLVILDWMLPGESGVS 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LARR +L ++ +T ++ LSKPF +L+ + +L K
Sbjct: 63 LARRWRADARTRELSIIMLTARSSEQDMVQGLDAGADDYLSKPFSTAELLARIRAVLRRK 122
>gi|163761582|ref|ZP_02168653.1| two component transcriptional regulator, winged helix family
protein [Hoeflea phototrophica DFL-43]
gi|162281178|gb|EDQ31478.1| two component transcriptional regulator, winged helix family
protein [Hoeflea phototrophica DFL-43]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L G+ V + + + A K+ F LL+ D++MP G+
Sbjct: 12 HLLVVDDDTRIRDLLSRYLTDQGFRVTTAADASEARRKLEGIDFDLLVIDVMMPGESGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E+ + ++ +T A D L+KPF+ R+LV +N +L
Sbjct: 72 LTRSLREI-KTVPILMLTALAEGDARIDGLEAGADDYLAKPFNPRELVLRINNILKR 127
>gi|260462562|ref|ZP_05810769.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
gi|259031758|gb|EEW33027.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
Length = 239
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD +R L + K G +G +R L++ D+++P G
Sbjct: 4 DAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRAQVDLIVLDVMLPGKSG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL R ++ +T + KPF R+L+ + +L
Sbjct: 64 LELCRDLRAQYS-TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121
>gi|228919441|ref|ZP_04082806.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840228|gb|EEM85504.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALNLIEQKEFDIILLDVMMPSMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|227890585|ref|ZP_04008390.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|301299690|ref|ZP_07205943.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
gi|227867523|gb|EEJ74944.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|300214343|gb|ADJ78759.1| Two-component response regulator [Lactobacillus salivarius CECT
5713]
gi|300852702|gb|EFK80333.1| response regulator ArlR [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L GYE C NG + +E + +L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLSRFVELELQHEGYETEVCKNGRQGLELALDEDWDAILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ + ++ +T +V + KPF + +L+ + +L
Sbjct: 60 GLEVCRRVRQV-KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|219854302|ref|YP_002471424.1| hypothetical protein CKR_0959 [Clostridium kluyveri NBRC 12016]
gi|219568026|dbj|BAH06010.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 243
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI + +D+ + + L +GY V NG A + + L++ D+++P++ G
Sbjct: 16 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 75
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ +TG + ++KPF R LV V LL
Sbjct: 76 DICEMLRKR-SKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRR 132
>gi|209527246|ref|ZP_03275757.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
gi|209492313|gb|EDZ92657.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
Length = 443
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + G ++ NG A + L+L DIVMP+MDG E
Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCKIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ V+ +T A + ++KPF +++ VN L I+
Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKIR 127
>gi|251796056|ref|YP_003010787.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247543682|gb|ACT00701.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN ++LLA+D+ + +FL L G+++ + +GA+A +E +L+ D++MPE+
Sbjct: 1 MNGIRLLLADDEPHIIQFLELGLLNEGFDIRTAQDGAAALQVAKEFQPHVLILDVMMPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ + + ++ V+ +T + + KPF +L+ + L
Sbjct: 61 NGFEVCQAVKDTGANVAVIMLTAKDDIEDRVKGLTLGADDYVVKPFSFEELLARIKARLR 120
Query: 120 IK 121
+
Sbjct: 121 NQ 122
>gi|167031289|ref|YP_001666520.1| osmolarity response regulator [Pseudomonas putida GB-1]
gi|166857777|gb|ABY96184.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
gi|313496610|gb|ADR57976.1| OmpR [Pseudomonas putida BIRD-1]
Length = 246
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L + GY + N ++ E F+L++ D+++P DG+
Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + + ++ +T L KPF+ +L+ V +L +
Sbjct: 72 ACKRLRQQNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129
>gi|126432768|ref|YP_001068459.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|126232568|gb|ABN95968.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length = 243
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD D+R + + L +G++V NG A + E L+ D+ MPE+DG+
Sbjct: 18 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGV 77
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L D+ + ++ V L+KPF L +LV ++ LL +
Sbjct: 78 AVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAH 137
>gi|91199976|emb|CAJ73018.1| strongly similar to two component response regulator of OmpR/PhoB
family [Candidatus Kuenenia stuttgartiensis]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + +L K L + + V +CN+G + + L++ DI++P MDG E
Sbjct: 2 RILVIEDEKKLANYLKKGLEEHHFAVDTCNDGEEGLFMINSHAYDLVVLDIMLPLMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R A + + + +T A+ L KPF +L + L+
Sbjct: 62 ILRTARKSGLRMPFLLLTAKDAIEDKVRGLDLGADDYLVKPFSFIELTARIRALIRR 118
>gi|86607675|ref|YP_476437.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556217|gb|ABD01174.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ + RF+ L GY V ++G + ++ L+L D ++P + G
Sbjct: 8 SAHILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-- 119
+E+ RR + V+ +T V+ + KPF +++L++ + L
Sbjct: 68 LEICRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQP 127
Query: 120 IKN 122
++
Sbjct: 128 RRS 130
>gi|329922786|ref|ZP_08278321.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
gi|328941928|gb|EGG38212.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
Length = 230
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++ + + + GY +++ ++G A + ++ L++ D++MP+MDGI+
Sbjct: 5 TILMVDDETEILKLMEIYVRNEGYTLLTASHGLEALEILKTHKVDLIILDVMMPQMDGIQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + + ++KPF +LV + L
Sbjct: 65 ACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELVARIKSQLRR 120
>gi|299149007|ref|ZP_07042069.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 3_1_23]
gi|298513768|gb|EFI37655.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 3_1_23]
Length = 1353
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + V + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|256843524|ref|ZP_05549012.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|293381453|ref|ZP_06627449.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
gi|312978303|ref|ZP_07790046.1| DNA-binding response regulator DltR [Lactobacillus crispatus
CTV-05]
gi|256614944|gb|EEU20145.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|290921970|gb|EFD98976.1| response regulator receiver domain protein [Lactobacillus crispatus
214-1]
gi|310894822|gb|EFQ43893.1| DNA-binding response regulator DltR [Lactobacillus crispatus
CTV-05]
Length = 221
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI
Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ E ++ +T A V L+KPF L++L+ +
Sbjct: 62 ALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|237722583|ref|ZP_04553064.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448393|gb|EEO54184.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1353
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + V + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|212691065|ref|ZP_03299193.1| hypothetical protein BACDOR_00555 [Bacteroides dorei DSM 17855]
gi|212666297|gb|EEB26869.1| hypothetical protein BACDOR_00555 [Bacteroides dorei DSM 17855]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY C +G + Y + + L + D++MP+
Sbjct: 4 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDLCVLDVMMPK 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 64 KDGFTLAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|154246098|ref|YP_001417056.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154160183|gb|ABS67399.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 261
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R+ L + L G+ V + +G +K+ + ++ D+++P+ G++
Sbjct: 28 HILVVDDDLEIRKLLGRYLAAQGFRVTTAGDGREMEEKLATQRIDFVVLDLMLPDASGLD 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L KPF+ R+LV + +L
Sbjct: 88 LCRALRNR-SKIPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRR 143
>gi|116618821|ref|YP_819192.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116097668|gb|ABJ62819.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED++++ +F+ L GYE + N+G S D E + ++L D+++PE++
Sbjct: 1 MS-KVLIVEDEENLAKFVGLELKHEGYEAETVNDGRSGLDLALENDYDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E+ ++ +T +V L KPF + +L+ + LL
Sbjct: 60 GLEVARRLREVKK-TPIIMMTARDSVIDRVSGLDYGADDYLVKPFAIEELLARIRSLLRR 118
>gi|309790587|ref|ZP_07685142.1| response regulator receiver modulated metal dependent
phosphohydrolase [Oscillochloris trichoides DG6]
gi|308227389|gb|EFO81062.1| response regulator receiver modulated metal dependent
phosphohydrolase [Oscillochloris trichoides DG6]
Length = 332
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD +R L++ L + Y ++ NG A DKV E L+L D+ MP +D
Sbjct: 1 MSAKILVVDDDPAIRDILVRILQRENYTPITATNGLEALDKVVHESPDLILLDVTMPILD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR E + V +TG L+KP L + L
Sbjct: 61 GFEVCRRLKDNERTALIPVTMLTGLDDREHRRRGVEVGADDFLTKPIEQSLLRARLRSQL 120
Query: 119 TIK 121
IK
Sbjct: 121 RIK 123
>gi|269957298|ref|YP_003327087.1| winged helix family two component transcriptional regulator
[Xylanimonas cellulosilytica DSM 15894]
gi|269305979|gb|ACZ31529.1| two component transcriptional regulator, winged helix family
[Xylanimonas cellulosilytica DSM 15894]
Length = 226
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + + L G++ V C +G A R ++L D+++P D
Sbjct: 1 MKSRVLVVDDDTALAEMIGMVLRTEGFDPVFCADGDGALAAFRSAQPDIVLLDVMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GTQVAREIRAE-SGVPIIMLTAKSDTVDVVLGLESGADDYVPKPFKPKELVARMRARLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|169350089|ref|ZP_02867027.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
gi|169293302|gb|EDS75435.1| hypothetical protein CLOSPI_00831 [Clostridium spiroforme DSM 1552]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R + L GY+V + NG + V + L + DI+MP MD
Sbjct: 1 MEHTILIVEDEMGIRDTVSVFLKNQGYKVYTATNGQEGLEVVSKHEIHLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + + D ++F++ + ++KPF +LV VN +
Sbjct: 61 GITMTMKLRQKY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFEPMELVARVNTNIRR 119
>gi|149376013|ref|ZP_01893779.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
gi|149359650|gb|EDM48108.1| DNA-binding response regulator GltR [Marinobacter algicola DG893]
Length = 238
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R L + L + GY+V++ G S + E L++ D+++P DG L
Sbjct: 8 ILVVDDDLAIRELLHEHLSRVGYDVMTAAEGDSMRRTLSEARVDLIVLDVMLPGDDGFTL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + ++ +T + L+KPF R+L V LL
Sbjct: 68 CREIRE-HSQVPIIMLTASSDETDRVVGLEIGADDYLAKPFSARELQARVKALLRR 122
>gi|119503167|ref|ZP_01625251.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
HTCC2080]
gi|119460813|gb|EAW41904.1| DNA-binding response regulator PhoB [marine gamma proteobacterium
HTCC2080]
Length = 233
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ +D+ +R L AL AGYE + +AY ++ ++ ++L D ++P G
Sbjct: 3 THKVLIVDDELPIRDMLRMALETAGYECLEAETIDAAYHQIVDDRPDIVLLDWMLPGGSG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL RR E+ DL V+ +T AA ++KPF LR+L+ + LL
Sbjct: 63 IELLRRIKRAEMTQDLPVIMLTAKAAEHNVIQGLDVGADDYITKPFALRELLARIKALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|113955138|ref|YP_730441.1| two-component response regulator [Synechococcus sp. CC9311]
gi|113882489|gb|ABI47447.1| two-component response regulator [Synechococcus sp. CC9311]
Length = 255
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD ++R+ + L GY+V ++ ++ + L++ D++MP DG+
Sbjct: 21 IWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQLEARLEFQRPDLIVLDLMMPGDDGLTA 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + DL V+ +T L+KPF R+L + +L ++
Sbjct: 81 LRRLRDAGDDLPVVMLTARGDGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRS 138
>gi|153950414|ref|YP_001399859.1| DNA-binding response regulator CreB [Yersinia pseudotuberculosis IP
31758]
gi|152961909|gb|ABS49370.1| transcriptional regulatory protein CreB [Yersinia
pseudotuberculosis IP 31758]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR PDL V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRR 120
>gi|327405721|ref|YP_004346559.1| integral membrane sensor hybrid histidine kinase [Fluviicola
taffensis DSM 16823]
gi|327321229|gb|AEA45721.1| integral membrane sensor hybrid histidine kinase [Fluviicola
taffensis DSM 16823]
Length = 1052
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED + +R+F+ + LG Y + NG + +E +L++D++MPEM+G+EL
Sbjct: 804 VLVVEDQEQLRKFICECLGDQ-YRYMEAENGIQGVEMAKEYLPDILISDVMMPEMNGVEL 862
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+L + ++ +T + L+KPF + +L V +L ++
Sbjct: 863 CGELKNNDLTSHIPIILLTAKSDQEDKEVGLEIGADDYLTKPFSVAELKLRVRNILRLR 921
>gi|320527693|ref|ZP_08028865.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
gi|320131936|gb|EFW24494.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R + + G+E NG A +KV+ F ++ D++MP +DG
Sbjct: 3 KILIVDDEANIREVVREYCEINGFETEEAENGLVAIEKVKNTHFDCVILDVMMPVLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +D + V+ ++ ++KPF ++L+ + +L
Sbjct: 63 TCKQIKSID-QVPVIMLSARQEEYDKLFGFELGVDDYVTKPFSPKELIARIKVVLER 118
>gi|307265327|ref|ZP_07546884.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919611|gb|EFN49828.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 225
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL--LLTDIVMPEMD 60
QK+L+ ED++ MR L L GYEV+ NG + + + +L DI++P++
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKAGLEYFNNNNKDISIILLDIMLPDIS 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + E + VM IT + KPF ++++ V +L+
Sbjct: 62 GWSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSR 120
>gi|295396500|ref|ZP_06806661.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
gi|294970692|gb|EFG46606.1| response regulator [Brevibacterium mcbrellneri ATCC 49030]
Length = 240
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHTVLRR 129
>gi|255527744|ref|ZP_05394598.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296187583|ref|ZP_06855977.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255508560|gb|EET84946.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296047540|gb|EFG86980.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 231
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ + L + VV C+NG A + ++E ++L DI++P +DG E
Sbjct: 5 KVLIVDDEINITELISVNLE-ENFNVVCCHNGLDAVELAKKELPDIILLDIMIPGIDGFE 63
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E + ++ +T ++KPF + +L+ ++ +L
Sbjct: 64 VCRRIRNDEATKKIPIIMLTVKKEENDKVRGLKLGADDYITKPFGINELLARIDAVLRRS 123
Query: 122 N 122
+
Sbjct: 124 D 124
>gi|220908317|ref|YP_002483628.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219864928|gb|ACL45267.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 224
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L + L Y V +G A+D V + L++ D+ +P +DGI
Sbjct: 2 RILVVEDDLQLAEMLAEVLSDHNYIVDLAEDGEKAWDYVNTLEYDLVILDVTLPRLDGIG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R V+ +T +A + KPF L +L+ V +L
Sbjct: 62 FCQRWRGKGEATPVLMLTARDTLADKVTGLDAGADDYMVKPFELPELLARVRAMLRR 118
>gi|77459601|ref|YP_349108.1| two component heavy metal response transcriptional regulator
[Pseudomonas fluorescens Pf0-1]
gi|77383604|gb|ABA75117.1| response regulatory protein [Pseudomonas fluorescens Pf0-1]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ +L+ L + GY V +GA E F +++ D++MP+MD
Sbjct: 1 MN--ILVVEDEPKAGNYLLNGLQELGYSVSLARDGADGLHLALEFDFDVIVLDVMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + D V+F+T +A L KPF +LV + L
Sbjct: 59 GWEVLRRLRKET-DTPVLFLTARDDIADRVKGLELGADDYLIKPFSFAELVARLRTLTRR 117
>gi|110634491|ref|YP_674699.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110285475|gb|ABG63534.1| two component transcriptional regulator, winged helix family
[Chelativorans sp. BNC1]
Length = 240
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V N A A K+ F LL+ D++MP DG+
Sbjct: 20 HLLVVDDDTRIRTLLKRFLTEEGFRVTVAANAAEARRKLAGLDFDLLVLDVMMPGEDGVG 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D+ ++ +T + L KPF R+LV VN +L
Sbjct: 80 LTRSLRQER-DVPILMLTALSETESRVTGLQAGADDYLPKPFDPRELVLRVNNILRR 135
>gi|332655153|ref|ZP_08420894.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
gi|332516013|gb|EGJ45622.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
Length = 222
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ MR + L G E +G A + + E+ + ++ D++MP +DG
Sbjct: 3 RILVVEDERAMREIIRDYLTAHGLECDLARDGQEALELLEEQDYDAVVLDVLMPRLDGFG 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++F+T A ++KPF L L+ ++ L+
Sbjct: 63 VCRAVRRQ-SSVPILFLTALGGEEETLRGYALGADDYVTKPFSLAVLLAKLQALIRR 118
>gi|262383009|ref|ZP_06076146.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_33B]
gi|262295887|gb|EEY83818.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_33B]
Length = 1354
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D F+ +L A Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1107 TLLVVDDNADFLEFMRLSLSSA-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1165
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1166 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1225
>gi|260171277|ref|ZP_05757689.1| two-component system sensor histidine kinase/response [Bacteroides
sp. D2]
gi|315919587|ref|ZP_07915827.1| two-component system sensor histidine kinase/response [Bacteroides
sp. D2]
gi|313693462|gb|EFS30297.1| two-component system sensor histidine kinase/response [Bacteroides
sp. D2]
Length = 1353
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLAEL-FNTLEAGNGEEALEKLKDNEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + V + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSEVKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|212692707|ref|ZP_03300835.1| hypothetical protein BACDOR_02205 [Bacteroides dorei DSM 17855]
gi|237709401|ref|ZP_04539882.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|265754601|ref|ZP_06089653.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
gi|212664785|gb|EEB25357.1| hypothetical protein BACDOR_02205 [Bacteroides dorei DSM 17855]
gi|229456457|gb|EEO62178.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|263234715|gb|EEZ20283.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
Length = 227
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++LL ED+ + + L + + + + NG K E+ +L+ D++MP M
Sbjct: 1 MEKIRVLLVEDEQTLAMIIKDTLEEQEFIITTAGNGEEGLRKFFEQKPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ RR + D ++F+T +A+ + L KPF +++L+ + L+
Sbjct: 61 DGFEMVRRIRQSDKVTPILFLTARSAINDVVEGFELGANDYLKKPFGMQELIVRLKALM 119
>gi|170076628|ref|YP_001733267.1| two-component response regulator; transcriptional regulatory
protein [Synechococcus sp. PCC 7002]
gi|169887490|gb|ACB01198.1| two-component response regulator; transcriptional regulatory
protein [Synechococcus sp. PCC 7002]
Length = 223
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILLAEDD ++ +F+ L GY + +NG + + +RE + LL+ D +MP +
Sbjct: 1 MKPHILLAEDDQNLAQFVASELRLEGYLITVAHNGIDSLNLIRENTYDLLIFDWLMPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L R + ++ +T ++ ++KPF + +L+ VN L
Sbjct: 61 GLDLCLRLRSSGIETPILLLTAKDEISDRVSGLNAGADDYVTKPFSIEELLARVNAHLRR 120
>gi|290352191|dbj|BAI78806.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDCGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|289550823|ref|YP_003471727.1| Putative response regulator ArlR [Staphylococcus lugdunensis
HKU09-01]
gi|315658319|ref|ZP_07911191.1| response regulator [Staphylococcus lugdunensis M23590]
gi|289180355|gb|ADC87600.1| Putative response regulator ArlR [Staphylococcus lugdunensis
HKU09-01]
gi|315496648|gb|EFU84971.1| response regulator [Staphylococcus lugdunensis M23590]
Length = 219
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RFL L Y+V N+G S DK + + L++ DI++P ++G+E+
Sbjct: 4 ILIVEDEQNLARFLELELTHENYKVDIENDGQSGLDKALTKTYDLIILDIMLPHINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ IT + + KPF + +L + +L +
Sbjct: 64 CRRIRQQY-TTPIIIITAKSETMDKVTGLDYGADDYIVKPFEIEELFARIRAILRRQ 119
>gi|326317379|ref|YP_004235051.1| two component transcriptional regulator PhoB, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323374215|gb|ADX46484.1| two component transcriptional regulator PhoB, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 235
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ + +G SA ++ ++L D ++P
Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G++LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|258541416|ref|YP_003186849.1| PhoB family transcriptional regulator [Acetobacter pasteurianus IFO
3283-01]
gi|256632494|dbj|BAH98469.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-01]
gi|256635551|dbj|BAI01520.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-03]
gi|256638606|dbj|BAI04568.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-07]
gi|256641660|dbj|BAI07615.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-22]
gi|256644715|dbj|BAI10663.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-26]
gi|256647770|dbj|BAI13711.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-32]
gi|256650823|dbj|BAI16757.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653814|dbj|BAI19741.1| two component response regulator PhoB [Acetobacter pasteurianus IFO
3283-12]
Length = 229
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +L+ EDD + R + L K GY V +G +A ++VR++ LLL D ++P +
Sbjct: 1 MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGEAALEQVRQKRPDLLLLDWMLPGI 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ R+ L ++ ++ L KPF + L V +
Sbjct: 61 SGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|222529476|ref|YP_002573358.1| winged helix family two component transcriptional regulator
[Caldicellulosiruptor bescii DSM 6725]
gi|222456323|gb|ACM60585.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor bescii DSM 6725]
Length = 232
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + L L K GY ++G A + ++ L++ DI+M + DG
Sbjct: 2 KNILIVDDEQHILELLKFNLRKEGYNTFEADSGILALEILKHNKVDLVILDIMMSDKDGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +L V+ ++ + ++KPF +++LV V LL
Sbjct: 62 EVLKEIRFNKDTKNLPVILLSAKSEEIDKILGLELGADDYITKPFSVKELVVRVKALLRR 121
>gi|254446246|ref|ZP_05059722.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198260554|gb|EDY84862.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 378
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D+ + L + L G V++ NG + + E L+L D++MP MDG
Sbjct: 14 KRTVLVVDDEPINIQLLQRKLEWDGITVLTATNGEACLKVAKAERPDLILLDVMMPGMDG 73
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + E + V+F+T + + ++KP L + + V L+
Sbjct: 74 FAVCAKLREDKRTKAIPVIFVTAHNSKKGKLEGLEAGAVDYITKPIDLDETIARVRTQLS 133
>gi|254387470|ref|ZP_05002709.1| response regulator [Streptomyces clavuligerus ATCC 27064]
gi|294815144|ref|ZP_06773787.1| Putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|326443505|ref|ZP_08218239.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|197701196|gb|EDY47008.1| response regulator [Streptomyces clavuligerus ATCC 27064]
gi|294327743|gb|EFG09386.1| Putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
Length = 221
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 48/118 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + L GY V ++G E L++ DI++P M+G
Sbjct: 2 RLLIVEDEKRLALSLARGLTAEGYAVDVVHDGLEGLHMASEGVHDLVILDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ ++ +T + L+KPF LV V LL +
Sbjct: 62 VCAALRAAGHDMPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
>gi|189466459|ref|ZP_03015244.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
17393]
gi|189434723|gb|EDV03708.1| hypothetical protein BACINT_02834 [Bacteroides intestinalis DSM
17393]
Length = 1316
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +D+ ++ +L K L + ++VV+ NG A + + ++ SL+++D++MPEMDG
Sbjct: 1064 SETILLVDDNIEILTYLQKELSRN-FKVVTAQNGREALEVLGKKNVSLVVSDVMMPEMDG 1122
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL E L V+ +T + + L KPF + L+ +N +L+
Sbjct: 1123 MELCTYIKENPSLCHLPVILLTAKSMTIYVEEGFQAGADDYLVKPFKVSTLIVRINNILS 1182
Query: 120 IK 121
+
Sbjct: 1183 GR 1184
>gi|15608173|ref|NP_215549.1| two component transcriptional regulator TRCR [Mycobacterium
tuberculosis H37Rv]
gi|31792225|ref|NP_854718.1| two component transcriptional regulator TRCR [Mycobacterium bovis
AF2122/97]
gi|121636963|ref|YP_977186.1| two component transcriptional regulator trcR [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|148660816|ref|YP_001282339.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
H37Ra]
gi|148822242|ref|YP_001286996.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis F11]
gi|167968534|ref|ZP_02550811.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
H37Ra]
gi|215402850|ref|ZP_03415031.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
02_1987]
gi|215410638|ref|ZP_03419446.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
94_M4241A]
gi|215426317|ref|ZP_03424236.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T92]
gi|215429895|ref|ZP_03427814.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
EAS054]
gi|215445184|ref|ZP_03431936.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T85]
gi|218752706|ref|ZP_03531502.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis GM
1503]
gi|219556903|ref|ZP_03535979.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T17]
gi|224989435|ref|YP_002644122.1| two component transcriptional regulator [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253799935|ref|YP_003032936.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis KZN 1435]
gi|254363948|ref|ZP_04979994.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis str. Haarlem]
gi|254550019|ref|ZP_05140466.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260185946|ref|ZP_05763420.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
CPHL_A]
gi|260200062|ref|ZP_05767553.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T46]
gi|260204253|ref|ZP_05771744.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
K85]
gi|289442456|ref|ZP_06432200.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T46]
gi|289446614|ref|ZP_06436358.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis CPHL_A]
gi|289569014|ref|ZP_06449241.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T17]
gi|289573673|ref|ZP_06453900.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis K85]
gi|289744771|ref|ZP_06504149.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
02_1987]
gi|289749566|ref|ZP_06508944.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T92]
gi|289753095|ref|ZP_06512473.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
EAS054]
gi|289757118|ref|ZP_06516496.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T85]
gi|289761171|ref|ZP_06520549.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis GM 1503]
gi|294995222|ref|ZP_06800913.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
210]
gi|297633562|ref|ZP_06951342.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
4207]
gi|297730547|ref|ZP_06959665.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
R506]
gi|298524531|ref|ZP_07011940.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis 94_M4241A]
gi|306775170|ref|ZP_07413507.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu001]
gi|306781915|ref|ZP_07420252.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu002]
gi|306783731|ref|ZP_07422053.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu003]
gi|306788086|ref|ZP_07426408.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu004]
gi|306792419|ref|ZP_07430721.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu005]
gi|306796821|ref|ZP_07435123.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu006]
gi|306802708|ref|ZP_07439376.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu008]
gi|306967087|ref|ZP_07479748.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu009]
gi|306971277|ref|ZP_07483938.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu010]
gi|307079006|ref|ZP_07488176.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu011]
gi|307083567|ref|ZP_07492680.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu012]
gi|313657876|ref|ZP_07814756.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis KZN
V2475]
gi|1869995|emb|CAB06846.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium
tuberculosis H37Rv]
gi|2979514|gb|AAC06144.1| response regulator homolog TrcR [Mycobacterium tuberculosis]
gi|31617813|emb|CAD93922.1| TWO COMPONENT TRANSCRIPTIONAL REGULATOR TRCR [Mycobacterium bovis
AF2122/97]
gi|121492610|emb|CAL71078.1| Two component transcriptional regulator trcR [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134149462|gb|EBA41507.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis str. Haarlem]
gi|148504968|gb|ABQ72777.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
H37Ra]
gi|148720769|gb|ABR05394.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis F11]
gi|224772548|dbj|BAH25354.1| two component transcriptional regulator [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253321438|gb|ACT26041.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis KZN 1435]
gi|289415375|gb|EFD12615.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T46]
gi|289419572|gb|EFD16773.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis CPHL_A]
gi|289538104|gb|EFD42682.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis K85]
gi|289542768|gb|EFD46416.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T17]
gi|289685299|gb|EFD52787.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
02_1987]
gi|289690153|gb|EFD57582.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis T92]
gi|289693682|gb|EFD61111.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
EAS054]
gi|289708677|gb|EFD72693.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis GM 1503]
gi|289712682|gb|EFD76694.1| DNA-binding response regulator TrcR [Mycobacterium tuberculosis
T85]
gi|298494325|gb|EFI29619.1| two component transcriptional regulator trcR [Mycobacterium
tuberculosis 94_M4241A]
gi|308216318|gb|EFO75717.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu001]
gi|308325370|gb|EFP14221.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu002]
gi|308331512|gb|EFP20363.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu003]
gi|308335318|gb|EFP24169.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu004]
gi|308339126|gb|EFP27977.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu005]
gi|308342797|gb|EFP31648.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu006]
gi|308350622|gb|EFP39473.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu008]
gi|308355255|gb|EFP44106.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu009]
gi|308359209|gb|EFP48060.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu010]
gi|308363111|gb|EFP51962.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu011]
gi|308366776|gb|EFP55627.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu012]
gi|323720534|gb|EGB29616.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis CDC1551A]
gi|326904738|gb|EGE51671.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis W-148]
gi|328459679|gb|AEB05102.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis KZN 4207]
Length = 257
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V ++G A K + +L+ DI++P++DG+E
Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR E D +F+T +V ++KPF L +LV + LL +
Sbjct: 93 ILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 151
>gi|326387405|ref|ZP_08209014.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208061|gb|EGD58869.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 263
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M K ILL EDD +R +AL GY+V + + GA + + L++ DI++P
Sbjct: 29 MTAKSILLVEDDPALRLLTARALRAHGYDVGTASTGAEMWVALESGAVDLIVLDIMLPGQ 88
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIEL RR D D+ V+FI+ + L KPF R+L+ + +L
Sbjct: 89 TGIELFRRLR-RDSDVPVIFISARGSEDDRVLGLELGADDYLPKPFGTRELIARIGAVLR 147
Query: 120 I 120
Sbjct: 148 R 148
>gi|308375329|ref|ZP_07443555.2| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu007]
gi|308346707|gb|EFP35558.1| two component system transcriptional regulator trcR [Mycobacterium
tuberculosis SUMu007]
Length = 254
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V ++G A K + +L+ DI++P++DG+E
Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWDVEVAHDGQEAIAKFDKVGPDVLVLDIMLPDVDGLE 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR E D +F+T +V ++KPF L +LV + LL +
Sbjct: 90 ILRRVRESDVYTPTLFLTARDSVMDRVTGLTSGADDYMTKPFSLEELVARLRGLLRRSS 148
>gi|283853868|ref|ZP_06371084.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
gi|283570743|gb|EFC18787.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
Length = 251
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + F+I L ++G+ V +G EP+++ + D+++P MDG++
Sbjct: 30 RILLVEDDEKIASFIIGGLRQSGFAVDHAADGLDGLHLATTEPYAVAVIDVMLPGMDGLK 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +V + +SKPF +L+ V L+
Sbjct: 90 VIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRR 146
>gi|228940282|ref|ZP_04102853.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228973198|ref|ZP_04133787.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228786394|gb|EEM34384.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819408|gb|EEM65462.1| Two-component response regulator [Bacillus thuringiensis serovar
berliner ATCC 10792]
Length = 236
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + +R + ++ +T + L KPF +L+ + L+
Sbjct: 71 GLRVLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
Query: 121 K 121
K
Sbjct: 131 K 131
>gi|254412519|ref|ZP_05026293.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196180829|gb|EDX75819.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 381
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL +D D + L GY++ +G SA V + P L+L D++MP+MDG
Sbjct: 9 ERILAVDDAPDNLFLMQTILETEGYDLSLVEDGYSALAIVEKSPPDLILLDVMMPQMDGY 68
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + P + ++ IT + + + + KP + +L+ V LL +
Sbjct: 69 EVTRRIRQNSSLPFIPILLITAY-EQSSAIEGLDAGADDFIRKPVDVGELLARVRSLLRL 127
Query: 121 KN 122
K+
Sbjct: 128 KH 129
>gi|89096575|ref|ZP_01169467.1| two-component response regulator [Bacillus sp. NRRL B-14911]
gi|89088590|gb|EAR67699.1| two-component response regulator [Bacillus sp. NRRL B-14911]
Length = 226
Score = 144 bits (366), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +D++ M+ L L GY+ + +G A V+ +LL DI+MPE+DG+
Sbjct: 2 KTILLVDDEERMKNLLALFLEPHGYKCLRAKDGYEAIQLVKRTHVDMLLLDIMMPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E R+ E ++ ++ +T ++KPF R L+ VN L +
Sbjct: 62 ETCRKIRE-FSNVPIIMLTARTDNLDMIKGFDCGADDYVTKPFDERVLLARVNALFRRQ 119
>gi|330958140|gb|EGH58400.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. maculicola str. ES4326]
Length = 222
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLEQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|319407929|emb|CBI81583.1| transcriptional regulator BatR [Bartonella schoenbuchensis R1]
Length = 240
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + DL V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|326789251|ref|YP_004307072.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326540015|gb|ADZ81874.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 234
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ EDD+ + L + L GYEV + G + + + + LL+ DI++P MD
Sbjct: 1 MLGRLLIVEDDEQIADILREYLMNKGYEVNWASTGNEGLEDFKMKMYDLLIVDIMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + D+ ++ I+ ++KPF L ++ + LL
Sbjct: 61 GYSLCQSIRWV-SDVPILIISARNKELDKIKGLKIGADDYVTKPFSLPEVEARIESLLRR 119
>gi|294507366|ref|YP_003571424.1| Response regulator receiver containing Stage II sporulation protein
E (SpoII) domain [Salinibacter ruber M8]
gi|294343694|emb|CBH24472.1| Response regulator receiver containing Stage II sporulation protein
E (SpoII) domain [Salinibacter ruber M8]
Length = 371
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ EDD +R L LGK YEV + NG A D++ E L+++DI+MP+MDG
Sbjct: 4 HTILVVEDDSTVRELLKYRLGKH-YEVYTATNGEEALDQIEETIPDLIISDIMMPKMDGF 62
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + +F+T A ++KPF + L++ V RLL
Sbjct: 63 ALQSALQTDKNTRVIPFIFLTARADEEARQQGERKGVDDYITKPFDMETLLSRVERLLER 122
>gi|291458575|ref|ZP_06597965.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
078 str. F0262]
gi|291419108|gb|EFE92827.1| transcriptional activator protein Irlr [Oribacterium sp. oral taxon
078 str. F0262]
Length = 223
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ ++R+ + + L +GY V + +G A + + L++ DI +P++DG
Sbjct: 2 KLLVVEDERELRQSIAEGLRLSGYTVDTAADGEIAEELFFSGSYDLIVLDINLPKIDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ +T + L KPFH +L + LL K
Sbjct: 62 LLQLIRRENKLVNVIMLTARTEIKDRVKGLDLGANDYLIKPFHFEELEARIRSLLRRK 119
>gi|254517651|ref|ZP_05129707.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
gi|226911400|gb|EEH96601.1| DNA-binding response regulator KdpE [Clostridium sp. 7_2_43FAA]
Length = 233
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ EDD +R F+ L Y + NG A +++ D+ +P++D
Sbjct: 2 MKVSILVVEDDKAIRNFISATLDIHSYNCFTAENGEQAMILATSHKPDIIILDLGLPDID 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + ++ ++ + ++ L+KPF + +L+ + +
Sbjct: 62 GVDIIKKIRA-WSNCPIIVVSARSEDKDKIEALDSGADDYLTKPFSVDELLARIRVAIRK 120
Query: 121 KN 122
N
Sbjct: 121 MN 122
>gi|160933828|ref|ZP_02081216.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753]
gi|156867705|gb|EDO61077.1| hypothetical protein CLOLEP_02690 [Clostridium leptum DSM 753]
Length = 226
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+AEDD + + L Y V + +NG A E + L+ DI+MP MDG+E
Sbjct: 2 RLLIAEDDTRLLKSLKHIFEANQYMVDAVSNGMDALAYAESEEYDGLIFDIMMPGMDGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R E +F+T + + L KPF +L+ V +L ++
Sbjct: 62 VLKRLREKGVCTPALFLTAKTEIDQRVEGLDAGADDYLPKPFSTPELLARVRAMLRRRD 120
>gi|119490653|ref|ZP_01623058.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119453818|gb|EAW34975.1| regulatory components of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 477
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + + L + L + Y++ NG A + +P L+L DIVMPEMDG ++
Sbjct: 13 ILIVDDHPENLKILTQMLSQKNYKLRKAINGEMALNAAFSKPPDLILLDIVMPEMDGYQV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E + ++ V+FI+ + ++KPF +++++ V L +++
Sbjct: 73 CQHIKENPITSEIPVIFISALDEAFNKVKAFEMGGVDYITKPFQIKEVLARVQLQLRLQH 132
>gi|114798462|ref|YP_760726.1| phosphate regulon transcriptional regulatory protein PhoB
[Hyphomonas neptunium ATCC 15444]
gi|114738636|gb|ABI76761.1| phosphate regulon transcriptional regulatory protein PhoB
[Hyphomonas neptunium ATCC 15444]
Length = 228
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+AED+ + L+ L + Y+V +G A + E LLL D ++P++
Sbjct: 1 MKPYVLVAEDESAVSELLLYNLKREDYDVAIAADGEEALMMIDERIPDLLLLDWMLPKVS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR +P+L ++ +T + ++KPF +L+ V +L
Sbjct: 61 GIEICRRVRATGVNPNLPIIMLTARGEESDRIRGLDTGADDYVTKPFSTTELMARVRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|162420052|ref|YP_001608150.1| DNA-binding response regulator CreB [Yersinia pestis Angola]
gi|162352867|gb|ABX86815.1| transcriptional regulatory protein CreB [Yersinia pestis Angola]
Length = 232
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR PDL V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRR 120
>gi|326798748|ref|YP_004316567.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
gi|326549512|gb|ADZ77897.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
Length = 231
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KILLAEDD ++ L L G ++V C +G A +E F L + D++MP+ DG
Sbjct: 2 RKILLAEDDPNLGEILKDYLELKGKFDVKLCQDGEEALRTFSKEEFDLCILDVMMPKKDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + +++ + ++F T + ++ ++KPF + +L+ +N LL
Sbjct: 62 FSLGKEIRKVNESVPIIFATAKGMMEDKTEAFNLGGDDYITKPFRVEELLLRINALLKRS 121
Query: 122 N 122
+
Sbjct: 122 S 122
>gi|114569827|ref|YP_756507.1| response regulator receiver modulated diguanylate cyclase
[Maricaulis maris MCS10]
gi|114340289|gb|ABI65569.1| response regulator receiver modulated diguanylate cyclase
[Maricaulis maris MCS10]
Length = 454
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D R L L +EV + NGA A + E L+L D++MP MD
Sbjct: 1 MSARILVVDDQAANVRLLEARLQAEYFEVCTATNGADAIAVAKAEQPDLILLDVMMPVMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + R + + V+ +T L+KP + + LL
Sbjct: 61 GYDTCSRIKDDPATRHIPVVMVTALDQREDRIRGLEAGADDFLTKPIDDVSMFARIRSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 65.2 bits (159), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 3/96 (3%)
Query: 28 EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT--ELDPDLKVMFITGFAA 85
E++ ++ A A LL+ D+ P DG+ L R L ++ + A
Sbjct: 177 EILETHDPAEAI-IAARNDADLLIVDLTSPGYDGLRLCARIRSDAATRQLPILAVVRPAD 235
Query: 86 VALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
V + ++ +P +L L K
Sbjct: 236 VQQAVRALDLGVNDIIQRPVDAGELAARSRTQLRRK 271
>gi|26989432|ref|NP_744857.1| DNA-binding response regulator [Pseudomonas putida KT2440]
gi|24984298|gb|AAN68321.1|AE016466_6 DNA-binding response regulator [Pseudomonas putida KT2440]
Length = 220
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G S ++ E F L++ D+ +P MDG+E
Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A+ L KPF L +L + LL
Sbjct: 62 LLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|28211540|ref|NP_782484.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28203981|gb|AAO36421.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 235
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD+++R + L + G+ V +N +A + + P L++ DI+MP
Sbjct: 4 MKKNAIILIVDDDEEIREIINILLSREGFVVWEASNANTAMAMLEK-PVDLIILDIMMPG 62
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G EL ++ + ++F++ + L KPF +L+ + LL
Sbjct: 63 RNGFELCTEIRKIT-TVPILFLSAKTQDIDKEEGFCCGGDDYLIKPFSQSELLLRIKALL 121
Query: 119 TI 120
Sbjct: 122 RR 123
>gi|325579099|ref|ZP_08149055.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
ATCC 33392]
gi|325159334|gb|EGC71468.1| transcriptional regulatory protein CpxR [Haemophilus parainfluenzae
ATCC 33392]
Length = 235
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL +DD ++ L + L G+E+ NNG A DK+ L+L D++MP ++
Sbjct: 1 MS-KILLVDDDIELTDLLAEVLRLTGFEIEVANNGQEALDKLNASH-QLVLLDVMMPVLN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ ++ ++ VM +T L KPF+ R+LV + +L
Sbjct: 59 GIETLKKIRQI-SNIPVMMLTARGEEIDRVLGLELGADDYLPKPFNDRELVARIKAILRR 117
>gi|325288180|ref|YP_004263970.1| winged helix family two component transcriptional regulator
[Cellulophaga lytica DSM 7489]
gi|324323634|gb|ADY31099.1| two component transcriptional regulator, winged helix family
[Cellulophaga lytica DSM 7489]
Length = 238
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L LG ++VV NG ++K +++ + + + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGIVLKDYLGMNNFDVVLAKNGMEGFEKFKKDIYDVCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR E + ++ ++F+T L+KPF L+ ++ +L K
Sbjct: 65 YTLAREIREKNENVPIVFLTAKTMKEDVLKGYKAGADDYLNKPFDSEVLLMKLKAILQRK 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|304440255|ref|ZP_07400145.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371304|gb|EFM24920.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 231
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED+D +R+F+ L + GY+V G + E +++ D+++P +D
Sbjct: 1 MKTKILLVEDEDAIRKFIKINLEREGYDVYEAGTGEEGIEIADSEDIKIVVLDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + DL ++ +T A ++KPF+ +L + L
Sbjct: 61 GFKVCETLRKKYKDLGIIMLTAKAEDYDKIMGLQYGTDDYMTKPFNPTELTLRIKS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|281426053|ref|ZP_06256966.1| two-component system sensor histidine kinase/response regulator
[Prevotella oris F0302]
gi|281399946|gb|EFB30777.1| two-component system sensor histidine kinase/response regulator
[Prevotella oris F0302]
Length = 1337
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+DD+R+ L+ L Y +++ +G + +R+E ++++D++MP M GIE
Sbjct: 1088 TILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGIE 1146
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV------N 115
L + E + V+ +T AV + ++KPF+ L++
Sbjct: 1147 LCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLINSR 1206
Query: 116 RLLTIK 121
RLL K
Sbjct: 1207 RLLQRK 1212
>gi|262276850|ref|ZP_06054643.1| protein PetR [alpha proteobacterium HIMB114]
gi|262223953|gb|EEY74412.1| protein PetR [alpha proteobacterium HIMB114]
Length = 226
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D++ +R L + L + V + + A +K++ F LL+ DI+MP G
Sbjct: 5 KKHILIIDDEEGIREPLKEYLESENFFVSTAKDAEDAKNKIQLLEFDLLIVDIMMPGQSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL + + D D ++F+T A + KPF ++LV + +L
Sbjct: 65 LELTKEIRK-DKDTPIIFLTAMGESASRIHGLETGADDYVPKPFEPKELVLRIKNILKR 122
>gi|218282853|ref|ZP_03489006.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
gi|218216309|gb|EEC89847.1| hypothetical protein EUBIFOR_01592 [Eubacterium biforme DSM 3989]
Length = 233
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R + + GY V+ NG +K+ L + DI+MP MD
Sbjct: 1 MEHTILVVEDEQGIREAIGIYMKNQGYNVILAANGKEGLEKIETNDIHLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + A + D ++F++ + ++KPF +LV V L
Sbjct: 61 GISMVMEARKHH-DFPILFLSAKSEDIDKITGLNIGADDYITKPFQSMELVARVRSHLRR 119
>gi|120611299|ref|YP_970977.1| two component transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|120589763|gb|ABM33203.1| two component transcriptional regulator, winged helix family
[Acidovorax citrulli AAC00-1]
Length = 235
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+ ED+ + + L G++ + +G SA ++ ++L D ++P
Sbjct: 1 MKRLPRVLIVEDESAIAELIAVNLRHNGFQPIWSEDGESAQRELDAVLPDVILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G++LAR+ + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLQLARKWRADARTKPIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|71735764|ref|YP_275695.1| DNA-binding response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71556317|gb|AAZ35528.1| DNA-binding response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 225
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G++V +C++GASA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLSSWLSQEGFQVRACHDGASARQALADAAPTAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRNDHPDLPVVMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|325066517|ref|ZP_08125190.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Actinomyces oris
K20]
Length = 242
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +LL +D+ +RR L L + GY V+ ++G A D + ++++D++MP MDG
Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERGGYRVLLASDGVEALDILASYQVDIIVSDVLMPRMDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR ++ +T A + LSKPF +L + + +L
Sbjct: 70 RELVRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRR 128
>gi|317478303|ref|ZP_07937467.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|316905462|gb|EFV27252.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 1342
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ +M F+ + L Y V++ NG A + E +L+++D+VMP MDG E
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ +T + + + KPF L+ + L+ +
Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKNR 1215
>gi|299142472|ref|ZP_07035604.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Prevotella oris C735]
gi|298576194|gb|EFI48068.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Prevotella oris C735]
Length = 1337
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+DD+R+ L+ L Y +++ +G + +R+E ++++D++MP M GIE
Sbjct: 1088 TILIVEDNDDIRQLLMTVLSPY-YRILTAVDGQEGLEVIRDEMPDIIISDVLMPNMSGIE 1146
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV------N 115
L + E + V+ +T AV + ++KPF+ L++
Sbjct: 1147 LCKIIKEDFAICHIPVVLLTARTAVEQELEGLKTGADDYITKPFNNELLISRCNNLINSR 1206
Query: 116 RLLTIK 121
RLL K
Sbjct: 1207 RLLQRK 1212
>gi|297585394|ref|YP_003701174.1| response regulator receiver [Bacillus selenitireducens MLS10]
gi|297143851|gb|ADI00609.1| response regulator receiver [Bacillus selenitireducens MLS10]
Length = 1104
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+A+D+ + L L GYE ++G D + E F L++ D++MP + G
Sbjct: 692 KARILIADDEPVNLQVLTNQLSLEGYETHLASSGEEVLDFIAAESFDLIILDLMMPGISG 751
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ E DL ++ +T + + + L KP +L + V L+
Sbjct: 752 YEVCVSLREDFSLVDLPILMLTAKSGLDDKVIAFEAGANDYLVKPCERLELTSRVRTLIR 811
Query: 120 IK 121
IK
Sbjct: 812 IK 813
>gi|326316348|ref|YP_004234020.1| winged helix family two component transcriptional regulator
[Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373184|gb|ADX45453.1| two component transcriptional regulator, winged helix family
[Acidovorax avenae subsp. avenae ATCC 19860]
Length = 232
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVM 56
MN Q+IL+ ED+ D+ ++ L +G+E +G +A ++ P L L DI++
Sbjct: 1 MNDDPQRILVVEDEPDIADVVLDYLRHSGFEAEHVADGHAAIARLTGPTPPDLTLLDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG+E+ R+A D ++ +T + KPF R++V V
Sbjct: 61 PGMDGLEVLRQARRRT-DRPIIMLTARVEEVDRLIGLELGADDYICKPFSPREVVARVRT 119
Query: 117 LLTI 120
+L
Sbjct: 120 VLRR 123
>gi|253568488|ref|ZP_04845899.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|298385458|ref|ZP_06995016.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
gi|251842561|gb|EES70641.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|298261599|gb|EFI04465.1| DNA-binding response regulator [Bacteroides sp. 1_1_14]
Length = 224
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ ++ F+ + L + G+ V C++G + + ++EEPF L++ DI+MP+++G+E
Sbjct: 3 KILLAEDEVNIASFIERGLKEFGHSVTVCHDGNTGWRILQEEPFDLVILDIIMPKINGLE 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ V+ +T L KPF ++L + LL
Sbjct: 63 LCHLYRQMFGYQAPVIMLTALGTTEDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|227539981|ref|ZP_03970030.1| possible response regulator [Sphingobacterium spiritivorum ATCC
33300]
gi|227240259|gb|EEI90274.1| possible response regulator [Sphingobacterium spiritivorum ATCC
33300]
Length = 226
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 63/118 (53%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + + +A+ + G++ + +G S + FSL++TDI++P++DG++L
Sbjct: 3 ILIIEDDLRVAELIERAVQEQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGLDL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +L PDL ++ +T + L KPF +R+L+ + LL K+
Sbjct: 63 CKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120
>gi|227500016|ref|ZP_03930095.1| response regulator [Anaerococcus tetradius ATCC 35098]
gi|227217913|gb|EEI83200.1| response regulator [Anaerococcus tetradius ATCC 35098]
Length = 227
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD+ + + L Y + A ++EE F L + DI++P+ D
Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E + ++ +T + ++KPF +LV V L
Sbjct: 61 GYYLCKKIRESF-NYPIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|160891619|ref|ZP_02072622.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
gi|156859026|gb|EDO52457.1| hypothetical protein BACUNI_04072 [Bacteroides uniformis ATCC 8492]
Length = 1342
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ +M F+ + L Y V++ NG A + E +L+++D+VMP MDG E
Sbjct: 1097 TVLVVEDNPEMLSFVSRQLSHE-YIVLTAVNGEEALRILDENFVNLIVSDVVMPLMDGFE 1155
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ +T + + + KPF L+ + L+ +
Sbjct: 1156 LCKTVKSKLDYSHIPIILLTAKTNIQSKVEGLELGADAYIEKPFSPEYLLAAIASLIKNR 1215
>gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp.
Marseille]
gi|151281400|gb|ABR89810.1| two components system response regulator [Janthinobacterium sp.
Marseille]
Length = 229
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L +AL +AGY V +NG A+ + + ++LLL DI +P+MDG+
Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E L V+ +T + ++KPF L + V L+
Sbjct: 62 VLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRR 118
>gi|22127156|ref|NP_670579.1| DNA-binding response regulator CreB [Yersinia pestis KIM 10]
gi|45443327|ref|NP_994866.1| DNA-binding response regulator CreB [Yersinia pestis biovar
Microtus str. 91001]
gi|150260093|ref|ZP_01916821.1| putative response regulator [Yersinia pestis CA88-4125]
gi|218928069|ref|YP_002345944.1| DNA-binding response regulator CreB [Yersinia pestis CO92]
gi|21960218|gb|AAM86830.1|AE013929_3 catabolic regulation response regulator [Yersinia pestis KIM 10]
gi|45438196|gb|AAS63743.1| putative response regulator [Yersinia pestis biovar Microtus str.
91001]
gi|115346680|emb|CAL19563.1| putative response regulator [Yersinia pestis CO92]
gi|149289501|gb|EDM39578.1| putative response regulator [Yersinia pestis CA88-4125]
Length = 233
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + +L + D+ +P+++
Sbjct: 2 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALSSGSPALAIVDVGLPDIN 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR PDL V+F+T + ++KPF R++ V +L
Sbjct: 62 GFDLCRRMLAAAPDLPVIFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTILRR 121
>gi|152976930|ref|YP_001376447.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025682|gb|ABS23452.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 230
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL EDD ++ + K L K G++V ++G K F L++ DI+MP++D
Sbjct: 1 MSRHILLIEDDISIQEMVEKYLSKEGFQVTFASDGEEGVAKFFHGSFDLIILDIMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R E + ++ ++ + KPF + +L +
Sbjct: 61 GLEVVRIIREK-SAVPILMMSAKDTDIDKAVGLGLGADDYICKPFSMIELAARAKASIRR 119
>gi|317483762|ref|ZP_07942704.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316924994|gb|EFV46138.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 988
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 50/114 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+D + + L G V +NG A D R + ++L DI MPE+DGIE
Sbjct: 873 RVLLAEDNDINQIVATEILKMKGIAVDVASNGLEAVDMARSGAYDVILMDIQMPELDGIE 932
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR PD+ ++ +T ++KP L + R
Sbjct: 933 ATRRIRAFLPDIPIIAMTAHTMKGDAEKCLEAGMQDHIAKPIDPETLFAALQRA 986
>gi|297567182|ref|YP_003686154.1| winged helix family two component transcriptional regulator
[Meiothermus silvanus DSM 9946]
gi|296851631|gb|ADH64646.1| two component transcriptional regulator, winged helix family
[Meiothermus silvanus DSM 9946]
Length = 219
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ EDD +R + L AG V+ +G A D + E L++ D+ +P
Sbjct: 1 MPAKVLVVEDDPGIRMLVATTLQSAGLAVLEARDGVEAMDFIPEA--DLVVLDVGLPRQS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + L V+ +TG + L+KPF +R+L V LL
Sbjct: 59 GWEVLEAIRQNFGQLPVLMLTGHSDETNRVRGLESGADDYLTKPFSVRELAARVKALLRR 118
>gi|158333299|ref|YP_001514471.1| diguanylate cyclase [Acaryochloris marina MBIC11017]
gi|158303540|gb|ABW25157.1| diguanylate cyclase (GGDEF domain) [Acaryochloris marina MBIC11017]
Length = 343
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L + L G+ V +G +A ++ L+L DI MP M+G+E
Sbjct: 10 ILIVDDVPTNLTILAQTLRDQGFTVWVATSGNAALKQLAHGLPDLILLDIQMPGMNGLET 69
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+F++ + A + + ++KPF +++ V L+I+
Sbjct: 70 CAKLKADLRTQDIPVIFMSALSEQANKVEGLSLGAVDYITKPFQEAEVLARVKVHLSIR 128
>gi|30018772|ref|NP_830403.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|218232832|ref|YP_002365383.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218895640|ref|YP_002444051.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228899271|ref|ZP_04063534.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228906332|ref|ZP_04070217.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228957004|ref|ZP_04118779.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228963678|ref|ZP_04124822.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|229042443|ref|ZP_04190189.1| Two-component response regulator [Bacillus cereus AH676]
gi|229108192|ref|ZP_04237814.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229126017|ref|ZP_04255040.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|229143310|ref|ZP_04271741.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|296501346|ref|YP_003663046.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|29894313|gb|AAP07604.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|218160789|gb|ACK60781.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|218544181|gb|ACK96575.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228640117|gb|EEK96516.1| Two-component response regulator [Bacillus cereus BDRD-ST24]
gi|228657442|gb|EEL13257.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228675208|gb|EEL30430.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|228726897|gb|EEL78108.1| Two-component response regulator [Bacillus cereus AH676]
gi|228796026|gb|EEM43490.1| Two-component response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228802635|gb|EEM49477.1| Two-component response regulator [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228853355|gb|EEM98127.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228860302|gb|EEN04699.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|296322398|gb|ADH05326.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 223
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ M R L L GY + +G A + ++ F ++L D++MP MDG +
Sbjct: 3 KILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMPSMDGWD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ +T ++KPF LV + +L
Sbjct: 63 TCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAILRR 118
>gi|148254507|ref|YP_001239092.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146406680|gb|ABQ35186.1| two component transcriptional regulator, winged helix family
[Bradyrhizobium sp. BTAi1]
Length = 224
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHYLGDSEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNGRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|238787325|ref|ZP_04631124.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
ATCC 33641]
gi|238724587|gb|EEQ16228.1| Transcriptional regulatory protein creB [Yersinia frederiksenii
ATCC 33641]
Length = 232
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + P +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR P+L V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRLLAQVPELPVVFLTARSEELDRIIGLEIGADDYIAKPFSPREVSARVRTVLRR 120
>gi|322389092|ref|ZP_08062657.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
903]
gi|321144228|gb|EFX39641.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC
903]
Length = 224
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ D+ R ++K L Y V + +G A D +R + ++++DI+MP++DG+
Sbjct: 2 KVLVIEDEVDLNRSIVKLLKTQQYSVDAAYDGQEALDYIRVSQYDVIISDIMMPQLDGLG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ +T ++ L KPF +L+ + +L N
Sbjct: 62 VLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120
>gi|284037861|ref|YP_003387791.1| histidine kinase [Spirosoma linguale DSM 74]
gi|283817154|gb|ADB38992.1| histidine kinase [Spirosoma linguale DSM 74]
Length = 1311
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R F+ L ++ Y V++ NG +++VR E ++++DI+MP++DG L
Sbjct: 1067 ILVVEDNIELRDFIANELSQS-YRVLTARNGQEGWEQVRSELPDVVISDIMMPDLDGYAL 1125
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ L + V+ +T A+ + L+KPF + +L + LLT +
Sbjct: 1126 TRQLKTNTLTNHIAVILLTARASQESRMNGLMQGADDYLTKPFSISELKQRICNLLTRQ 1184
>gi|77919324|ref|YP_357139.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77545407|gb|ABA88969.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
Length = 227
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED +D+ + + L G+ V NG F L++ DI++P MDG+
Sbjct: 2 RILIVEDQEDILQNIADYLHLHGFTVDCAQNGLGGLHLAVTLEFDLIILDIMLPGMDGLT 61
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E V+F+T + + L KPF L +L V +L
Sbjct: 62 LCRKLRKEAGVQTPVIFLTARDKLEDKLAGFKAGSDDYLVKPFSLPELHARVEAVLRR 119
>gi|326800502|ref|YP_004318321.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
gi|326551266|gb|ADZ79651.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
Length = 228
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ D+ + L + GY V + NG A R+ L++ DI+MP+MDG
Sbjct: 5 KYKILVVDDEPDIVELIEYNLKREGYSVFTATNGQEAVSTARKINPDLIILDIMMPKMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + + ++F+T + ++KP R L++ +N +L
Sbjct: 65 IEACRIMRSMPEFKNTFMVFLTARSEEYSEIAGFNVGADDYIAKPIKPRALISRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|319650220|ref|ZP_08004366.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
gi|317398051|gb|EFV78743.1| hypothetical protein HMPREF1013_00971 [Bacillus sp. 2_A_57_CT2]
Length = 233
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + L K GY V ++G ++ +E + LL+ D ++P MDG+
Sbjct: 2 KILVVEDNESVCSMLEMFFMKEGYHGVFVHDGQQGFEHFNKERWDLLIVDWMLPIMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ EL + ++ +T + + ++KPF L+ + +
Sbjct: 62 LCRKIREL-SKVPIIMLTAKDSESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRR 117
>gi|317478508|ref|ZP_07937667.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|316905322|gb|EFV27117.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 1326
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ D F+ + L Y + NGA A + + +++++DI+MP M+G E
Sbjct: 1078 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1136
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R+ + V+ +T A + + KPF + L + + +
Sbjct: 1137 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1194
>gi|308177887|ref|YP_003917293.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
Re117]
gi|307745350|emb|CBT76322.1| DNA-binding response regulator MtrA [Arthrobacter arilaitensis
Re117]
Length = 226
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ + + L G++ C G+ A + RE L+L D+++P +D
Sbjct: 1 MKARILVVDDDEALSEMIGIVLQNDGFDTSFCYEGSGALEAFRESNPDLVLLDLMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI++ + + D+ V+ +T + A + KPF +LV V L
Sbjct: 61 GIKVCKLI-SAESDVPVVMLTAKSDTADVVRGLESGADDYVPKPFKPAELVARVRARLR 118
>gi|270295515|ref|ZP_06201716.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274762|gb|EFA20623.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 1336
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ D F+ + L Y + NGA A + + +++++DI+MP M+G E
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R+ + V+ +T A + + KPF + L + + +
Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204
>gi|224540196|ref|ZP_03680735.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
14838]
gi|224518186|gb|EEF87291.1| hypothetical protein BACCELL_05109 [Bacteroides cellulosilyticus DSM
14838]
Length = 1316
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ILL +D+ ++ +L K L + ++V++ NG A + + +E SL+++D++MPEMDG
Sbjct: 1064 SETILLVDDNVEILTYLQKKLSRN-FKVITAQNGREALEVLGKENMSLVVSDVMMPEMDG 1122
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL E L V+ +T + + L KPF + L+ +N +L+
Sbjct: 1123 MELCTYIKENPSFCHLPVILLTAKSMTMYVEEGFQAGADDYLVKPFKVSTLIVRINNILS 1182
Query: 120 IK 121
+
Sbjct: 1183 GR 1184
>gi|161779849|gb|ABX79411.1| VanRc4 [Enterococcus casseliflavus]
Length = 231
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI++ +D+ ++ + L G++V +G SA + +E + + D+++P++D
Sbjct: 1 MAEKIIVVDDEKEIAELVTTFLRNEGFQVEPFYDGTSALAYLEKETVDVAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + + V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQLLQNIRKTH-FFPVLMLTAKGEDLDKITGLSLGADDYVTKPFNPLEVVARVKTQLRR 119
>gi|160891349|ref|ZP_02072352.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
gi|156858756|gb|EDO52187.1| hypothetical protein BACUNI_03798 [Bacteroides uniformis ATCC 8492]
Length = 1336
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ D F+ + L Y + NGA A + + +++++DI+MP M+G E
Sbjct: 1088 TILLVDDNKDFCSFMSEYLSDE-YAIQVAYNGAEALKILEKNSVNIVISDIMMPVMNGTE 1146
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R+ + V+ +T A + + KPF + L + + +
Sbjct: 1147 LCRQIKTNMQWSHIPVILLTARMAEEYKSEGFEQGADDYIVKPFDFKLLKLRIRKFIE 1204
>gi|116873785|ref|YP_850566.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742663|emb|CAK21787.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 231
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEMD
Sbjct: 1 MTTSILIADDDREIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRKSGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|83815858|ref|YP_444228.1| sensor histidine kinase [Salinibacter ruber DSM 13855]
gi|83757252|gb|ABC45365.1| sensor histidine kinase with multiple PAS and a response regulator
receiver domain [Salinibacter ruber DSM 13855]
Length = 802
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + + L Y V ++GA Y R L+++D++MPE+DG E
Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592
Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + DPD+ V+F+T A + + L+KPF L+ + L+
Sbjct: 593 LCRKIKQ-DPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIAT 651
Query: 121 K 121
+
Sbjct: 652 R 652
>gi|325661991|ref|ZP_08150610.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471654|gb|EGC74873.1| hypothetical protein HMPREF0490_01348 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 224
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L ++ Y V + +G +A + + + ++ DI+MP+ DG+
Sbjct: 2 RLLLAEDEKALAKALKAILERSNYSVDAVYDGEAALEYMAAGNYDGIILDIMMPKKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T V + L+KPFH ++L+ + + ++
Sbjct: 62 VLKEIRKKGSKIPVLLLTAKGEVDDKVEGLDAGANDYLTKPFHAKELLARLRAMTRVQ 119
>gi|325272398|ref|ZP_08138793.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
gi|324102475|gb|EGB99926.1| osmolarity response regulator [Pseudomonas sp. TJI-51]
Length = 246
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + + ++ +T L KPF+ +L+ V +L +
Sbjct: 71 SACKRLRQHNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129
>gi|294777639|ref|ZP_06743090.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|294448707|gb|EFG17256.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
Length = 1374
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1112 KYKLLVVEDHADIRLYLRVLFSAT-YNIIMAENGEEGVRMARKEIPDLVITDVMMPVMNG 1170
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1171 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1230
Query: 120 IK 121
+
Sbjct: 1231 SR 1232
>gi|227541888|ref|ZP_03971937.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
gi|227182331|gb|EEI63303.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
Length = 226
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G++ V +GA A E L+L D+++P M+
Sbjct: 1 MKAKILVVDDDPAISEMLSIVLEAEGFDTVVVTDGAEAVATFEREQPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
GI++ + P + ++ +T ++KPF ++
Sbjct: 61 GIDICKTIRRSSP-VPIVMLTAKTDTIDIVLGLESGADDYVTKPFKPKE 108
>gi|118443679|ref|YP_877073.1| transcriptional regulator [Clostridium novyi NT]
gi|118134135|gb|ABK61179.1| transcriptional regulatory protein [Clostridium novyi NT]
Length = 232
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D++++ L L K G+ + S NG A + + + DI+MP++DG
Sbjct: 3 RVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDGYH 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ E D+ V+ ++ + ++KPF+ +++ V L N
Sbjct: 63 LVRKIRENY-DMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120
>gi|117619167|ref|YP_854965.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560574|gb|ABK37522.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 423
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+ + ++ L AG+ + +G +A + E+ F +++ D++MP +DG
Sbjct: 201 SMKILVVEDNPQVAETIMDYLELAGHRLDCAYHGQAALQLLAEQRFDVIIMDVMMPRLDG 260
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ R E V+F+T ++ L KPF + +L + L
Sbjct: 261 LSTVARLREQGIPTPVLFLTARDSLDDKLAGFKAGGDDYLVKPFAMEELEVRLQAL 316
>gi|254975419|ref|ZP_05271891.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255092806|ref|ZP_05322284.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255314548|ref|ZP_05356131.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255517223|ref|ZP_05384899.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255650329|ref|ZP_05397231.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|306520295|ref|ZP_07406642.1| two-component response regulator [Clostridium difficile QCD-32g58]
Length = 232
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++
Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ LL
Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|87125186|ref|ZP_01081032.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9917]
gi|86166955|gb|EAQ68216.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. RS9917]
Length = 175
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDRDMRELVGGHLEHNGFDVQRAEDGIKGQALALQYSPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|159902683|ref|YP_001550027.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
gi|159887859|gb|ABX08073.1| two-component response regulator [Prochlorococcus marinus str. MIT
9211]
Length = 258
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P++D
Sbjct: 1 MKPSILLIEDDKDMRELVAGHLEHCGFDVQRAEDGIRGQALAMQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T + L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGLKDKLTGFNSGADDYLTKPFDLEELQVRVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRTH 124
>gi|329116649|ref|ZP_08245366.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
gi|326907054|gb|EGE53968.1| response regulator ArlR [Streptococcus parauberis NCFD 2020]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIVEDEKNLARFVSLELQHEGYEVSVEVNGREGLETALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|319952570|ref|YP_004163837.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
gi|319421230|gb|ADV48339.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +ILL +D+ D+ L L GYEV + NGA K +++ L++ D++MP
Sbjct: 1 MKKKDIRILLVDDEPDILEILSYNLSAEGYEVFTAKNGAEGVAKAKKKQPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + + F+T + ++KP + V++V
Sbjct: 61 EMDGIEACEIIRNTPGLEETIITFLTARSEDYSQVAGFDAGADDYITKPIKPKVFVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|302536872|ref|ZP_07289214.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302445767|gb|EFL17583.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 246
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G++V + +G +A LL+ D+++P DG+
Sbjct: 19 RRVLVVEDDRTIADAIAARLRAEGFQVQTAYDGPAAVAAAESWQPELLVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|300853701|ref|YP_003778685.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300433816|gb|ADK13583.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + + L +EVV C +G + +E F LL+ DI++P++D
Sbjct: 1 MMKKILIIEDDLSIAELIRDYLELENFEVVICTDGIEGLNNFKENKFDLLILDIMLPQID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + E D+ V+ ++ ++KPF +LV V +
Sbjct: 61 GFSILHSIQEE-KDIPVLLVSAKKEEIDKIKGLTLGADDYITKPFSPSELVARVKSHIK 118
>gi|218439897|ref|YP_002378226.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
gi|218172625|gb|ACK71358.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7424]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ILL +D+ +R + L A ++V ++ A++ +++ P L+++DI+MP
Sbjct: 1 MSKQANILLVDDEPGVRESVQAYLEYADDFQVQVASHANQAWEILQKNPPDLVISDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
E+DG + ++ + + V+F+T LSKPF +L V
Sbjct: 61 EVDGYQFLKKLRDDPRYEAIPVVFLTARGMTTDRIQGYNAGCDAYLSKPFDPEELEAIVK 120
Query: 116 RLLTIK 121
LL +
Sbjct: 121 NLLERR 126
>gi|160941449|ref|ZP_02088785.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
BAA-613]
gi|158435659|gb|EDP13426.1| hypothetical protein CLOBOL_06341 [Clostridium bolteae ATCC
BAA-613]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N+G+S DK +E + LL+ D+++P D
Sbjct: 1 MS-KILIVEDEESIAELEKDYLELSGFEVEIENDGSSGLDKALKEDYDLLILDLMLPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E+ + ++ ++ ++KPF ++V V +
Sbjct: 60 GFEICKRVREV-KNTPIIMVSAKKEDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118
>gi|119945892|ref|YP_943572.1| two component transcriptional regulator, winged helix family
protein [Psychromonas ingrahamii 37]
gi|119864496|gb|ABM03973.1| two component transcriptional regulator, winged helix family
protein [Psychromonas ingrahamii 37]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ +R L L + GYE + + SA +++ E L+L D + P
Sbjct: 1 MASRILVVEDEVAIRDMLCFVLDQHGYECIEADTYQSALNQLHEPYPDLILLDWMFPGGS 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+L + + + V+ +T ++KPF ++L+ + ++
Sbjct: 61 GIKLLSHLKQDNILRSIPVVMLTARGEEQDKVRGLENGADDYVTKPFSPKELMARLKTVM 120
Query: 119 TIKN 122
N
Sbjct: 121 RRVN 124
>gi|104783385|ref|YP_609883.1| two-component response regulator GltR [Pseudomonas entomophila L48]
gi|95112372|emb|CAK17099.1| two-component response regulator GltR [Pseudomonas entomophila L48]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD D+R L L ++G++V + +G + P L++ D+++P+ DG
Sbjct: 6 KSILMVDDDQDIRELLQTYLARSGFQVHAEADGQGFRRALDSSPCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRLSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125
>gi|281420807|ref|ZP_06251806.1| DNA-binding response regulator RprY [Prevotella copri DSM 18205]
gi|281405099|gb|EFB35779.1| DNA-binding response regulator RprY [Prevotella copri DSM 18205]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G+ V C +G Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFTTVLCPDGEVGYKEFNKNKFDIAVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + DL ++F+T + ++KPF + +LV V +L
Sbjct: 66 LAQEIRQTNADLPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRVEAILRR 122
>gi|222524928|ref|YP_002569399.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|222448807|gb|ACM53073.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 245
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+A+DD + R + AL YE NG A + E + L+ D++MP +DG
Sbjct: 18 KRRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDG 77
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ IT + ++KPF + + V V +L
Sbjct: 78 FDACERIRAK-SDVPIVIITAREGTDDIVQGFRRGADEYITKPFKVAEFVARVEAILRR 135
>gi|172041120|ref|YP_001800834.1| two-component system response regulator [Corynebacterium
urealyticum DSM 7109]
gi|171852424|emb|CAQ05400.1| two-component system response regulator [Corynebacterium
urealyticum DSM 7109]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL ED++ + L L + GY+V +G A + ++L D+++P +
Sbjct: 1 MT-KILLVEDEESLSDPLSYLLEREGYDVSIAEDGLKAVEMFELHGADIILLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ +T ++KP+ R+L+ + +L
Sbjct: 60 GTEVCRAIRAK-SMVPIIMLTAKDTEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRR 118
>gi|163753061|ref|ZP_02160185.1| hypothetical protein KAOT1_12912 [Kordia algicida OT-1]
gi|161326793|gb|EDP98118.1| hypothetical protein KAOT1_12912 [Kordia algicida OT-1]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + K+LLAED+ + + + ++L +EV C NG A+ ++ +L+ D++MP
Sbjct: 1 MKKNTIKLLLAEDEPALGQIVKESLESRDFEVFLCENGEEAWRIYQKVQPEILVLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG LA+ + + + ++F+T + V + L KPF + +L+ ++ L
Sbjct: 61 KKDGFTLAQEIRQENATIPIIFLTAKSQVKDVVEGFQHGGNDYLKKPFSMEELIVRIHAL 120
Query: 118 LTI 120
L
Sbjct: 121 LDR 123
>gi|12964068|emb|CAC29256.1| putative regulatory protein [Bartonella quintana]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKNLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRR 125
>gi|326940923|gb|AEA16819.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 224
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + ++ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNATPILLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|294505895|ref|YP_003569953.1| two-component system sensor histidine kinase/response regulator,
hybrid [Salinibacter ruber M8]
gi|294342223|emb|CBH23001.1| two-component system sensor histidine kinase/response regulator,
hybrid [Salinibacter ruber M8]
Length = 802
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + + L Y V ++GA Y R L+++D++MPE+DG E
Sbjct: 534 TVLVIDDNSVVCTLVRTHLEPE-YRVEEAHDGAEGYTLARTLLPDLVISDVMMPEVDGFE 592
Query: 64 LARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + DPD+ V+F+T A + + L+KPF L+ + L+
Sbjct: 593 LCRKIKQ-DPDIDHVPVVFLTARADLEDKVEGLDVGADAYLTKPFEPEALIARIENLIAT 651
Query: 121 K 121
+
Sbjct: 652 R 652
>gi|237736365|ref|ZP_04566846.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
gi|229421407|gb|EEO36454.1| DNA-binding response regulator [Fusobacterium mortiferum ATCC 9817]
Length = 219
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R+ + L + GY V +G +K + +++ DI+MP++DG
Sbjct: 2 KKILVIDDEWKIRKLIKDYLVREGYIVDEAGDGEEGIEKFFSNIYDIVILDIMMPKIDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T A + + + + KPF+ + LV +V LL
Sbjct: 62 SVCRKIREE-SQVPIIMLTARADESDQLFGFDLETDEYMVKPFNPKLLVAKVKALLRR 118
>gi|261368040|ref|ZP_05980923.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
15176]
gi|282570028|gb|EFB75563.1| DNA-binding response regulator VicR [Subdoligranulum variabile DSM
15176]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61
+++L+ ED+ +R + L AG+EV+ + A + + + EP L DI++P MDG
Sbjct: 2 KRVLVVEDEASIREMVALNLKMAGWEVLEAPSAERALELMHKSEPCDAALLDIMLPGMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L D D+ ++ ++ + + ++KPF + +LV + L
Sbjct: 62 LSLCETIRRDDNDIGIIIVSAKGQESDKIRGLSIGADDYITKPFSVSELVARLEALTRR 120
>gi|224537099|ref|ZP_03677638.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521276|gb|EEF90381.1| hypothetical protein BACCELL_01976 [Bacteroides cellulosilyticus
DSM 14838]
Length = 752
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+AED+DDMR FL +L Y VV +NG A + + +++ DI+MP ++G
Sbjct: 503 TILVAEDNDDMRLFLKNSLST-DYHVVEASNGEEAMNMALQLNPDIIVCDIMMPVLNGDA 561
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + +T A ++KPF + L + LL +
Sbjct: 562 VCSRIKTSVETSHIPFILLTALADKEDIIKGLDCGADDYITKPFDISILKARIRNLLANR 621
>gi|160936855|ref|ZP_02084220.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
BAA-613]
gi|158440236|gb|EDP17982.1| hypothetical protein CLOBOL_01744 [Clostridium bolteae ATCC
BAA-613]
Length = 234
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY+V N A + + +E L+L DI+MP M+G+E+
Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAAKGLEIISKEEVHLVLLDIMMPGMNGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSQLRR 120
>gi|119509039|ref|ZP_01628190.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119466205|gb|EAW47091.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ + RF+ L GY+V +G +A RE L++ D ++P + G+E
Sbjct: 3 HILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARELDIDLVILDWMLPGLSGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVAL--NPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T V+ + KPF + +L+ V L
Sbjct: 63 ICRRLRSTGDQVPVILLTAKDEVSDGHRVAGLDAGADDYVVKPFSVEELLARVRAHLRR 121
>gi|145593524|ref|YP_001157821.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145302861|gb|ABP53443.1| response regulator receiver [Salinispora tropica CNB-440]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ +G A RE ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRENRPDIVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVARSIRGE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRR 119
>gi|30019942|ref|NP_831573.1| two-component response regulator vanR [Bacillus cereus ATCC 14579]
gi|29895487|gb|AAP08774.1| Two-component response regulator vanR [Bacillus cereus ATCC 14579]
Length = 247
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S +NG + + + L + DI+MP+MDGIEL
Sbjct: 25 ILIVDDDQDIVRFVKANLMQEGFKVFSAHNGEESLEIINNNSIQLAILDIMMPQMDGIEL 84
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 85 CRRIREKHS-LPIMFLSAKSSDVDKVVGFSTGADDYIVKPFSTIEFIARVKAQLRR 139
>gi|33594128|ref|NP_881772.1| two component response regulator [Bordetella pertussis Tohama I]
gi|33598090|ref|NP_885733.1| transcriptional regulatory protein OmpR [Bordetella parapertussis
12822]
gi|33602983|ref|NP_890543.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
RB50]
gi|33564202|emb|CAE43488.1| two component response regulator [Bordetella pertussis Tohama I]
gi|33566648|emb|CAE38858.1| transcriptional regulatory protein OmpR [Bordetella parapertussis]
gi|33568614|emb|CAE34372.1| transcriptional regulatory protein OmpR [Bordetella bronchiseptica
RB50]
gi|332383543|gb|AEE68390.1| two component response regulator [Bordetella pertussis CS]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + + ++ LL+ D ++P DG +
Sbjct: 7 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGAD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + D+ V+ +T L KPF R+L+ + +L K
Sbjct: 67 ACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124
>gi|148262168|ref|YP_001228874.1| two component, sigma-54 specific, Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146395668|gb|ABQ24301.1| two component, sigma-54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 452
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GYEV + ++G + SL++TD+ M MD
Sbjct: 1 MKAKILVIDDDSSLRRVLEYNLQEEGYEVQAASSGEEGLYLFGQSRPSLVITDMKMSGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + + E P+ V+ IT F V + ++ ++KPF+ L V + L
Sbjct: 61 GLMVLKSVKERSPETLVIIITAFGTVDVAVEAMKAGAYDYITKPFNRDALKLTVRKAL 118
>gi|227484748|ref|ZP_03915064.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172]
gi|325846324|ref|ZP_08169314.1| response regulator receiver domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|227237270|gb|EEI87285.1| response regulator VanRG [Anaerococcus lactolyticus ATCC 51172]
gi|325481588|gb|EGC84627.1| response regulator receiver domain protein [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD+ + + L Y + A ++EE F L + DI++P+ D
Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E + ++ +T + ++KPF +LV V L
Sbjct: 61 GYYLCKKIRESF-NYPIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|189464019|ref|ZP_03012804.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
17393]
gi|189438592|gb|EDV07577.1| hypothetical protein BACINT_00354 [Bacteroides intestinalis DSM
17393]
Length = 1399
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+LL ED++D+ ++K LG Y++ + +G A + V L+++D++MP MDG
Sbjct: 1140 KHTLLLVEDNEDLLALMVKLLGAE-YDICTATDGKEALEVVESADIDLIVSDVMMPVMDG 1198
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE + + ++ +T + ++ ++KPF+L L + LL
Sbjct: 1199 IEFCKAVKGNFDTSHIPLILLTAKSKEEDRVEAYESGADAFIAKPFNLSILHARIGNLLK 1258
Query: 120 IK 121
+
Sbjct: 1259 SR 1260
>gi|113952901|ref|YP_731779.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
gi|113880252|gb|ABI45210.1| DNA-binding response regulator RpaA [Synechococcus sp. CC9311]
Length = 266
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DM + L +G++V ++G + L+L D+++P +D
Sbjct: 1 MKPSILLIEDDRDMSELVGGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPNVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTASIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|75759827|ref|ZP_00739903.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74492685|gb|EAO55825.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ KILL +D++ M R L L GY + +G A + ++ F ++L D++MP
Sbjct: 1 MHKIMVKILLVDDEERMLRLLDLFLSPRGYFCMKATSGLEALKLIEQKEFDIILLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG + + ++ ++ ++ +T ++KPF LV + +
Sbjct: 61 SMDGWDTCYQIRQI-SNVPIIMLTARNQNYDMVKGLTMGADDYITKPFDEHVLVARIEAI 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|330818169|ref|YP_004361874.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
gi|327370562|gb|AEA61918.1| DNA-binding response regulator [Burkholderia gladioli BSR3]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A + E + L+L D+ +P+ DG++
Sbjct: 15 RILLVEDDKMIAEGVRKALKADGFAVDWVQDGEAALTAIGGETYDLMLLDLGLPKRDGVD 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ IT AV+ L KPF L +L + L+ ++
Sbjct: 75 VLRTLRSRGHALPVLIITARDAVSDRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 133
>gi|268610267|ref|ZP_06143994.1| two-component response regulator [Ruminococcus flavefaciens FD-1]
Length = 223
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ D+ L L GY V + NNGA A ++ + L+L D+ MPE DG E
Sbjct: 3 KILVADDEKDVVSLLKDYLELKGYCVFTANNGAEAIEQASK-SPDLMLLDVNMPEADGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++F+T A + KPF L +L + +
Sbjct: 62 VCRKVRD-HVSCPILFLTARIEDEDKIQGFASGGDDYILKPFSLDELGARIAAHIRR 117
>gi|320008929|gb|ADW03779.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G + +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|212697532|ref|ZP_03305660.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
7454]
gi|212675531|gb|EEB35138.1| hypothetical protein ANHYDRO_02105 [Anaerococcus hydrogenalis DSM
7454]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KI++ +D+ ++ L L G+ V N A D V E F L++ DI++ +MD
Sbjct: 4 MNDKIIIVDDEKEIADLLELYLTNDGFSVSKAFNAKDALDLVESENFDLMILDIMLEDMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ +++ V L
Sbjct: 64 GFSVCKKIREKHY-FPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRR 122
>gi|198276094|ref|ZP_03208625.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
gi|198270906|gb|EDY95176.1| hypothetical protein BACPLE_02281 [Bacteroides plebeius DSM 17135]
Length = 1325
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q ILL ED++DM + L+ L Y+V NG DK EE L+++D++MP M G
Sbjct: 1066 KQTILLVEDNEDMLQVLVDMLSPL-YKVKIAMNGQEGLDKALEESPDLIISDVMMPVMSG 1124
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + + V+ +T + + KPF+ + L+ ++ +L
Sbjct: 1125 TEMCMKLKTNFNSSHIPVILLTALTSDDSKLKGVQCGADDYVEKPFNHKILLGKIANILR 1184
Query: 120 IK 121
+
Sbjct: 1185 SR 1186
>gi|293410584|ref|ZP_06654160.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
B354]
gi|291471052|gb|EFF13536.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
B354]
Length = 461
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETYCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSNETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|223043244|ref|ZP_03613291.1| transcriptional regulatory protein ResD [Staphylococcus capitis
SK14]
gi|222443455|gb|EEE49553.1| transcriptional regulatory protein ResD [Staphylococcus capitis
SK14]
Length = 219
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RF+ L Y V +G + DK + + L++ D+++P ++G+E+
Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ IT + KPF + +L+ + +L +
Sbjct: 64 CRQIRQEQS-TPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ 119
>gi|254387744|ref|ZP_05002982.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294817993|ref|ZP_06776635.1| Two component transcriptional regulator, winged helix family
[Streptomyces clavuligerus ATCC 27064]
gi|326446884|ref|ZP_08221618.1| two component transcriptional regulator, winged helix family
protein [Streptomyces clavuligerus ATCC 27064]
gi|197701469|gb|EDY47281.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294322808|gb|EFG04943.1| Two component transcriptional regulator, winged helix family
[Streptomyces clavuligerus ATCC 27064]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L + LG G+ V +GA A + +E + ++ D+++P M+G+
Sbjct: 2 RILVVEDDPRLMELLCRGLGGEGFAVDGTGDGAHALELAQENEYDAIVLDVMLPGMNGLR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+ +T + ++KPF LV + L+
Sbjct: 62 VCARLRENRIWTPVLMLTARDGEYDEAEGLDTGADDYVTKPFSYIALVARLRALVRR 118
>gi|170761766|ref|YP_001788740.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum A3 str. Loch Maree]
gi|169408755|gb|ACA57166.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum A3 str. Loch Maree]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ M F+ L GY+V +G A +KV + L+L DI++P ++GIE
Sbjct: 5 KILLVEDEEQMSMFIEMELTHEGYKVDVAYDGREALEKVENTEYQLILLDIMIPGLNGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ RR + + ++ +T + V+ L+KPF + +L+ +
Sbjct: 65 VCRRIRQ-FSCVPIIMLTAKSDVSDKVLGLDVGANDYLTKPFAIEELLARIR 115
>gi|163736445|ref|ZP_02143864.1| two component transcriptional regulator, winged helix family
protein [Phaeobacter gallaeciensis BS107]
gi|163743309|ref|ZP_02150690.1| phosphate regulon transcriptional regulatory protein PhoB
[Phaeobacter gallaeciensis 2.10]
gi|161383497|gb|EDQ07885.1| phosphate regulon transcriptional regulatory protein PhoB
[Phaeobacter gallaeciensis 2.10]
gi|161390315|gb|EDQ14665.1| two component transcriptional regulator, winged helix family
protein [Phaeobacter gallaeciensis BS107]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ +G A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVLRAEHGEEALLIVEEDMPDIIVLDWMMPNLSGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRRLKTRTETRNIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125
>gi|144900012|emb|CAM76876.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Magnetospirillum gryphiswaldense MSR-1]
Length = 234
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + AL GY+V + ++GA A + +P L + DI MP MD
Sbjct: 1 MAHTIALVDDDRNILTSVSMALEAEGYKVRTYSDGAEALRGLTSQPVDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF + L+ + LL
Sbjct: 61 GMELLQRLRKQ-SAIPVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRALLRR 119
>gi|126650356|ref|ZP_01722584.1| two-component response regulator [Bacillus sp. B14905]
gi|126593006|gb|EAZ86988.1| two-component response regulator [Bacillus sp. B14905]
Length = 241
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+KIL+ +D+ + + L L K + + + + G V+E + ++L DI++P++
Sbjct: 4 TEKILIVDDEVGILKLLEITLRKENFINIDAASTGKDTLQLVKENHYDIILLDIMLPDIS 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + ++F++ + ++KPF+ ++V + +L
Sbjct: 64 GFELCTEIRKHT-NTPIIFVSARSTDFDKLTGLGIGGDDYITKPFNPLEVVARIKVILRR 122
Query: 121 K 121
+
Sbjct: 123 Q 123
>gi|12002210|gb|AAG43239.1|AF123314_2 putative response regulator rr [Corynebacterium glutamicum]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + L L K G++ + +G +A + ++L D+++P M G +
Sbjct: 3 RILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMSGTD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCKELRSV-STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRR 119
>gi|30022740|ref|NP_834371.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|229129950|ref|ZP_04258916.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
gi|29898299|gb|AAP11572.1| Two-component response regulator [Bacillus cereus ATCC 14579]
gi|228653641|gb|EEL09513.1| hypothetical protein bcere0015_43900 [Bacillus cereus BDRD-Cer4]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|310779946|ref|YP_003968278.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
gi|309749269|gb|ADO83930.1| two component transcriptional regulator, winged helix family
[Ilyobacter polytropus DSM 2926]
Length = 222
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ +L K L +AGY+V NG A + L++ D+++P+++G+E
Sbjct: 2 KILVVEDEQNIMTYLKKGLTEAGYKVDVAGNGEDAIYLASINNYDLVILDVMIPKINGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ ++ V + L+KPF +L+ + +L
Sbjct: 62 VCRILRREKNPAYIILLSAKDQVQDKVEGLDAGADDYLTKPFVFAELLARIRAVLRR 118
>gi|284990844|ref|YP_003409398.1| winged helix family two component transcriptional regulator
[Geodermatophilus obscurus DSM 43160]
gi|284064089|gb|ADB75027.1| two component transcriptional regulator, winged helix family
[Geodermatophilus obscurus DSM 43160]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDDD +RR + L + G EV +G ++ E P+ ++L D+V+P G+E+
Sbjct: 11 VLIIEDDDRIRRVVSITLRREGLEVTEAGSGEEGLARLAERPYDIVLLDLVLPGRSGLEV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T A + ++KPF +L + L
Sbjct: 71 CREIRRV-STTPVIMVTARADSSDVIAGLEAGADDYVTKPFVAEELSARIRALARR 125
>gi|323340668|ref|ZP_08080920.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
gi|323091791|gb|EFZ34411.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+D++ F+ L GYE C NG D E + +L D+++PE++
Sbjct: 1 MS-RILIIEDEDNLSNFVSLELQHEGYETKVCENGREGLDTALNEDWDAILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T +V + KPF + +L+ + +L
Sbjct: 60 GLEVCRRLRQSKS-TPIIMMTARDSVIDRVSGLDHGADDYVVKPFAIEELLARLRAVLRR 118
>gi|239624688|ref|ZP_04667719.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239521074|gb|EEQ60940.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 234
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY+V N A + + +E L+L DI+MP M+G+E+
Sbjct: 6 ILVVDDEKEIADLIEIYLVSDGYKVFKAENAARGLEILAKEDIHLVLLDIMMPGMNGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + ++ ++ ++ + + KPF+ +L V L
Sbjct: 66 CKKIRENN-NIPIIMLSAKSTDLDKILGLGTGADDYVVKPFNPLELTARVKSHLRR 120
>gi|224371412|ref|YP_002605576.1| putative chemotaxis response regulator [Desulfobacterium
autotrophicum HRM2]
gi|223694129|gb|ACN17412.1| putative chemotaxis response regulator [Desulfobacterium
autotrophicum HRM2]
Length = 396
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL +D + L+ L + G +++ NG +A ++ L+L DI+MP +DG
Sbjct: 22 TESILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKARPDLILLDIMMPGIDG 81
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR + V+F++ ++KPF +++ VN LT
Sbjct: 82 FEVCRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQPEEVIARVNTHLT 141
Query: 120 I 120
I
Sbjct: 142 I 142
>gi|153812004|ref|ZP_01964672.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
gi|149831903|gb|EDM86989.1| hypothetical protein RUMOBE_02397 [Ruminococcus obeum ATCC 29174]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N G +K E + L++ D+++PE+D
Sbjct: 1 MS-KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALNEDYDLIILDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + ++ ++ ++ ++KPF +LV V +
Sbjct: 60 GFDICRQVRQE-KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMER 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|78213935|ref|YP_382714.1| two component LuxR family transcriptional regulator [Synechococcus
sp. CC9605]
gi|78198394|gb|ABB36159.1| two component transcriptional regulator, LuxR family [Synechococcus
sp. CC9605]
Length = 245
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+EV + +G + K ++ ++++D++MP +DG
Sbjct: 20 RLLLVDDEPGLRAAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYG 79
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ + V+F+T A + KPF +LV V + +
Sbjct: 80 LLQKLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 139
>gi|186681317|ref|YP_001864513.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186463769|gb|ACC79570.1| two component transcriptional regulator, LuxR family [Nostoc
punctiforme PCC 73102]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +++LL +DD ++ + L GYEV++ NG A + + ++ +++ D++MPE
Sbjct: 16 MKDHKRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQDVPDMIICDVMMPE 75
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG + E + V+F++ A + KPF +LV +V
Sbjct: 76 MDGYTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVES 135
Query: 117 LLT 119
L
Sbjct: 136 SLK 138
>gi|325103253|ref|YP_004272907.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
gi|324972101|gb|ADY51085.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKIL+ +D+ D+ + L K GY+V + NG A + R+ L++ D++MP+MDG
Sbjct: 5 KQKILIVDDEPDILELIEYNLKKEGYQVFTATNGQDAITEARKTSPDLIILDVMMPKMDG 64
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + + ++F+T + KP R LV+ +N +L
Sbjct: 65 IEACRIMRGMPEFKNTFMVFLTARIEEYSEIAGFNVGADDYIPKPIKPRALVSRINAILR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|229114545|ref|ZP_04243960.1| Two-component response regulator [Bacillus cereus Rock1-3]
gi|228668895|gb|EEL24322.1| Two-component response regulator [Bacillus cereus Rock1-3]
Length = 224
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V C NGA A D + + L++ DI++P +DG++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEYYSVDGCGNGADALDYISMATYDLIVLDIMIPRIDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQRLRADNNTTPVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|225568924|ref|ZP_03777949.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
15053]
gi|225162423|gb|EEG75042.1| hypothetical protein CLOHYLEM_05003 [Clostridium hylemonae DSM
15053]
Length = 217
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+ + + ++L AGY +G A D V ++ + L+L DI++PE++
Sbjct: 1 MN-KILIVEDEVPISNLIKESLSDAGYLCFCAFDGIQAADMVEQKRYDLVLLDIMLPEIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL L + V+F+T + V ++KPF + +L+ V +L
Sbjct: 60 GYELLEYIRPLG--IPVIFLTARSDVRDKVKGLKSGAEDYITKPFEIAELLARVETVLRR 117
>gi|189463223|ref|ZP_03012008.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
gi|189430202|gb|EDU99186.1| hypothetical protein BACCOP_03936 [Bacteroides coprocola DSM 17136]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+D+R +L K Y V + +A K+ + + +L DI++P+ +G++
Sbjct: 2 KILIVEDDNDLREITTHSLEKERYVVSQAPDYRTALQKIEDYDYDCILLDIMLPDGNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L L V+ ++ A++ + L KPFHL +L + LL K
Sbjct: 62 LLAELHALGKHTNVIILSAKASLEDKVNGLDLGADDYLPKPFHLAELHARIKSLLRRK 119
>gi|167855905|ref|ZP_02478655.1| YgiX [Haemophilus parasuis 29755]
gi|167852993|gb|EDS24257.1| YgiX [Haemophilus parasuis 29755]
Length = 223
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L L K+G+ V +G + D + P+ ++ D+ +P+MDG+E
Sbjct: 2 RILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D+ V+ +T + L KPF L ++V + L+ +
Sbjct: 62 VLQSWRRANQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119
>gi|94499427|ref|ZP_01305964.1| putative response regulator [Oceanobacter sp. RED65]
gi|94428181|gb|EAT13154.1| putative response regulator [Oceanobacter sp. RED65]
Length = 560
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D R L L G++V NG A ++ + F L+L D++MP MDG+E
Sbjct: 2 HILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGLE 61
Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E+ + + V+F+T D LSKP++ L +++ L I
Sbjct: 62 ATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEVILKAKIHAHLRI 121
Query: 121 K 121
+
Sbjct: 122 R 122
>gi|113476325|ref|YP_722386.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
gi|110167373|gb|ABG51913.1| adenylate/guanylate cyclase [Trichodesmium erythraeum IMS101]
Length = 1119
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
+L+ +D+ + + L Y + NNG A + + + L+L D++MP M G
Sbjct: 717 TVLIVDDEPVNLQVIRNNLALQNYAITEANNGIEALEMIEKGLMPDLILLDVMMPHMTGY 776
Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+A++ E + ++ +T V+ + L KPF ++L+ + + +
Sbjct: 777 EVAKKLREKYLHIELPIIMLTAKPLVSDLVEGFVSGANDYLIKPFSKQELLARIKIHIRL 836
>gi|330980369|gb|EGH78482.1| DNA-binding response regulator [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G++V +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLSSWLSQEGFQVRACHDGTSARQALADPAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRADHPDLPVVMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|311069837|ref|YP_003974760.1| two-component response regulator [Bacillus atrophaeus 1942]
gi|310870354|gb|ADP33829.1| two-component response regulator [Bacillus atrophaeus 1942]
Length = 239
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ + + + L K G++ V++ + A V++E LL+ D++M M G E
Sbjct: 6 ILIVDDENAIVDMVKRVLDKEGFQNVMTAGSAEEAIPIVKKEKIDLLVLDVMMDGMSGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E D + F+T + A ++KPF+ +LV + L
Sbjct: 66 ACAAIRE-YSDAPIFFLTAKTSDTDKLSGFASGADDYITKPFNPLELVARIRAHLKR 121
>gi|260172390|ref|ZP_05758802.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Bacteroides sp. D2]
gi|315920686|ref|ZP_07916926.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313694561|gb|EFS31396.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1338
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ D+ ++L + + V+ +NG A + + +E ++++D++MPEMDG+E
Sbjct: 1082 TVLLVEDNVDLLNLTRESLAEW-FRVLRASNGREALEVLAKENVDVIVSDVMMPEMDGLE 1140
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1141 LCSKVKSEISYSHIPVILLTAKTTLESKVEGLECGADVYVEKPFSVKQLHMQIENLLKLR 1200
>gi|224535984|ref|ZP_03676523.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522398|gb|EEF91503.1| hypothetical protein BACCELL_00848 [Bacteroides cellulosilyticus
DSM 14838]
Length = 1111
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +LL ED++D+ ++K LG Y++ + NG A + V E L+++D++MP MDG
Sbjct: 852 SHTLLLVEDNEDLLGLMVKLLGT-DYKIHTATNGKEALEIVESEDIDLIVSDVMMPVMDG 910
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE R + ++ +T ++ ++KPF+L L + LL
Sbjct: 911 IEFCRSIKGNFDTSHIPLILLTAKKQEEDRVEAYESGADAFITKPFNLSVLHARIGNLLK 970
Query: 120 IK 121
+
Sbjct: 971 SR 972
>gi|253698665|ref|YP_003019854.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M21]
gi|251773515|gb|ACT16096.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M21]
Length = 509
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ D+ L L AGYE V +G A + V E F L++ DI MP M
Sbjct: 1 MQKDKILIVDDEADIALILKLQLEDAGYETVRARDGVEALEAVAGEQFDLIMLDIKMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+E+ R + V+ +T + + D+ +SKPF D++ +V R +
Sbjct: 61 DGLEVLSRLK--GDETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSTDDMLQKVERAI 117
>gi|297582644|ref|YP_003698424.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297141101|gb|ADH97858.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ M + + G+ V+ ++G +A ++V +EP L++ D++MP+M+G E
Sbjct: 3 TILIVDDETRMLDLVALYVAPYGHRVLKESDGEAAVNRVADEPVDLVILDVMMPKMNGWE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T ++KPF +L+ V+ LL
Sbjct: 63 VCQDIRS-FSDVPIIMLTARDGKEDVVKGLRYGADDYVTKPFDEGELMARVDALLRR 118
>gi|118443383|ref|YP_877594.1| two-component response regulator [Clostridium novyi NT]
gi|118133839|gb|ABK60883.1| two-component response regulator [Clostridium novyi NT]
Length = 222
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++ MR+ L ++G+ V+ +G +E L++ DI++P +DG +
Sbjct: 3 ILIIEDEERMRKLLKDYFKRSGFSVLEAEDGVKGLKVFKENSVDLVILDIMIPCLDGWTV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T + ++KPF + LV +V LL
Sbjct: 63 CKSIRQ-NSKVPIIMLTAKSEEEDKLLGYELGCDDYVTKPFSPKVLVAKVKALLKR 117
>gi|148264719|ref|YP_001231425.1| two component, sigma-54 specific, Fis family transcriptional
regulator [Geobacter uraniireducens Rf4]
gi|146398219|gb|ABQ26852.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter uraniireducens Rf4]
Length = 457
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ MR FL L + GY V N A + + + L+++D+ MP ++
Sbjct: 1 MQTKILVVDDEQSMREFLAILLEREGYYVAQAENAEVALKLLESDTYDLVVSDVSMPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R P+ V+ IT + ++ ++KPF + ++ V L
Sbjct: 61 GMALLARIKTTTPETAVLMITAYTTAEQAVEAMKLGAYDYIAKPFKVEEVKVLVKNALEK 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|227505097|ref|ZP_03935146.1| response regulator [Corynebacterium striatum ATCC 6940]
gi|227198300|gb|EEI78348.1| response regulator [Corynebacterium striatum ATCC 6940]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++ + L L K G++V+ ++G +A ++ ++L D+++P M G ++
Sbjct: 4 ILIVEDEESLADPLAFLLRKEGFDVILASDGPTALEQFANNTVDIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRA-TSSVPVIMVTSRDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|209520876|ref|ZP_03269617.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|295677130|ref|YP_003605654.1| two component transcriptional regulator PhoB, winged helix family
[Burkholderia sp. CCGE1002]
gi|209498683|gb|EDZ98797.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|295436973|gb|ADG16143.1| two component transcriptional regulator PhoB, winged helix family
[Burkholderia sp. CCGE1002]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A++ + + L+L D ++P
Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAHNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GISFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|195978766|ref|YP_002124010.1| TCS response regulator CovR-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867917|ref|YP_002743865.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
gi|225871169|ref|YP_002747116.1| response regulator protein [Streptococcus equi subsp. equi 4047]
gi|195975471|gb|ACG62997.1| TCS response regulator CovR-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700573|emb|CAW95079.1| response regulator protein [Streptococcus equi subsp. equi 4047]
gi|225701193|emb|CAW98111.1| response regulator protein [Streptococcus equi subsp.
zooepidemicus]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|152981322|ref|YP_001355016.1| two components system response regulator [Janthinobacterium sp.
Marseille]
gi|151281399|gb|ABR89809.1| two components system response regulator [Janthinobacterium sp.
Marseille]
Length = 246
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +DD ++R L L K G NG + + L++ D+++P DG
Sbjct: 4 NDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDG 63
Query: 62 IELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + V+ +T LSKPF +R+L + +L
Sbjct: 64 LTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRR 123
>gi|108797145|ref|YP_637342.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119866230|ref|YP_936182.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|108767564|gb|ABG06286.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119692319|gb|ABL89392.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
Length = 243
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD D+R + + L +G++V NG A + E L+ D+ MPE+DG+
Sbjct: 18 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAANGKEALRLLSAESHDALVLDVQMPELDGV 77
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L D+ + ++ V L+KPF L +LV ++ LL +
Sbjct: 78 AVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAH 137
>gi|304404378|ref|ZP_07386039.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304346185|gb|EFM12018.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 243
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D+ ++ + L + GY V + +NG A V E L++ D+++ ++
Sbjct: 1 MNVSKILVVDDEPEIIELMTLYLQREGYAVYAADNGTDALRLVDEVRPDLIVLDVLLKQL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+++ ++ E+ + V+F++ + + ++KPF LV V L
Sbjct: 61 NGLDVCQQIREITA-VPVLFVSAKSDDNDIIHGLSVGGDDYMTKPFSPGQLVARVKAHLR 119
Query: 120 IKN 122
++
Sbjct: 120 RQS 122
>gi|300774812|ref|ZP_07084675.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
gi|300506627|gb|EFK37762.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD L L +EV +G + E F + + D++MP+ D
Sbjct: 1 MSNRILLVEDDQSFGAVLKDYLTINNFEVTLATDGEQGLKEFTENEFDICIFDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA ++D + ++F+T ++KPF L+ ++ +L
Sbjct: 61 GFSLAEDVKKIDKNTPIIFLTARNMREDILKGYQLGADDYITKPFDTELLLYKIKAILQR 120
Query: 121 KN 122
+
Sbjct: 121 SS 122
>gi|269925906|ref|YP_003322529.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thermobaculum terrenum ATCC BAA-798]
gi|269789566|gb|ACZ41707.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thermobaculum terrenum ATCC BAA-798]
Length = 466
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 60/115 (52%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+A+DD +R L L GY+V +G D+V++ L+L D+ MP++DG
Sbjct: 5 NRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
IE+ ++ ++ ++ +T F + + ++KPF L D+ +NR
Sbjct: 65 IEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINR 119
>gi|94497234|ref|ZP_01303806.1| two component transcriptional regulator, winged helix family
protein [Sphingomonas sp. SKA58]
gi|94423339|gb|EAT08368.1| two component transcriptional regulator, winged helix family
protein [Sphingomonas sp. SKA58]
Length = 236
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I+L EDD +R +AL + GY+V ++G + P L++ D+++P +GI+L
Sbjct: 6 IILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVMLPGTNGIDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D+ ++FI+ + L KPF R+L+ + +L
Sbjct: 66 CRQIRRK-SDVPIIFISARGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120
>gi|330863190|emb|CBX73317.1| signal transduction histidine-protein kinase baeS [Yersinia
enterocolitica W22703]
Length = 670
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DG
Sbjct: 472 SGTVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDG 531
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R D+ +M +T + KP+ R++V V +L
Sbjct: 532 ISICREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 589
>gi|291515446|emb|CBK64656.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Alistipes shahii WAL
8301]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R +++ L + Y V + A+A DK+ + +L DI++P G+
Sbjct: 2 KILIVEDEPSLREIMVRTLTREQYVVEQAADYAAALDKIAAYDYDCILLDIMLPGGSGLR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L V+ I+ ++ + LSKPFHL +L + +L
Sbjct: 62 LLEELKRRRSPAAVIIISARDSLDDKIEGLELGADDYLSKPFHLAELSARIRSVLRR 118
>gi|253583816|ref|ZP_04861014.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
gi|251834388|gb|EES62951.1| OmpR family response regulator [Fusobacterium varium ATCC 27725]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ +RR+L L Y V + +G +K + + ++L D++MP+ G
Sbjct: 2 KNILIIEDEKKIRRYLQLELEHEKYSVDTAQDGEEGIEKFKNNFYDIILLDLMMPKFSGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + ++ ++ +T + L+KPF + +L + L K+
Sbjct: 62 EVCKIIRK-TSNIPIIVLTAKDHTLNKVELLDMGADDYLTKPFEIEELFARIRVALRNKS 120
>gi|217970353|ref|YP_002355587.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
gi|217507680|gb|ACK54691.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
Length = 219
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL Y V +GASA + E F+L + D+ +P MDG++
Sbjct: 2 RILLVEDDAALGEGIRVALKPEAYTVDWVQDGASALHALTHEDFALAVLDLGLPRMDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ +T A + L KPF + +L + LL
Sbjct: 62 VLQRLRAAANPVPVLVLTARDATSDRIAGLDAGADDYLVKPFDVDELKARIRALLRR 118
>gi|225405674|ref|ZP_03760863.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
DSM 15981]
gi|225042775|gb|EEG53021.1| hypothetical protein CLOSTASPAR_04895 [Clostridium asparagiforme
DSM 15981]
Length = 238
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++R + L GY+V +G + +E L + D++MP MDGI
Sbjct: 7 RILLVEDDKEIREGVEIFLRSQGYQVFQAADGLEGLKLLEQEEVQLAIVDVMMPRMDGIT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E+ D V+F++ + ++KPF +L+ VN L
Sbjct: 67 MVVKLREMY-DFPVIFLSAKSEEVDKILGLNMGADDYITKPFTPMELLARVNSQLRR 122
>gi|170748757|ref|YP_001755017.1| two component transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170655279|gb|ACB24334.1| two component transcriptional regulator, winged helix family
[Methylobacterium radiotolerans JCM 2831]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L G+ V S G A + E L+L D ++P + GIEL
Sbjct: 3 VLIVEDEEALTTLLRYNLEAEGFLVDSAARGDDAELLLAERIPDLVLLDWMLPGLSGIEL 62
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR L V+ +T + KPF + +L+ + LL
Sbjct: 63 CRRIRARRETERLPVIMLTARGEEGDRVRGLGTGADDYIVKPFSVPELLARIRALLRR 120
>gi|83646377|ref|YP_434812.1| signal transduction protein [Hahella chejuensis KCTC 2396]
gi|83634420|gb|ABC30387.1| predicted signal transduction protein containing a membrane domain,
an EAL and a GGDEF domain [Hahella chejuensis KCTC 2396]
Length = 841
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D + L GY +S NG A E SL+L D++MPEM+G E
Sbjct: 23 TVLIVDDSPLNLDVAVACLESRGYRTLSAENGVQALQIAMEHQPSLILLDVMMPEMNGFE 82
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ +L D+ V+F+T + V ++KPF + +L V+ + +K
Sbjct: 83 TCRKLKKLSGCDDIPVIFMTALSDVKSKKAGFDAGGVDYVTKPFQVEELAARVHTHIALK 142
Score = 97.1 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 22/114 (19%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD ++ R + + L YEV+ +N AY+ + +++++D+ MP G++
Sbjct: 720 VLVVDDDVNILRSIKRILRDEAYEVLVASNTEDAYEVLARREVAVIVSDLQMPGESGVQF 779
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRL 117
+ + P + +TG + + + +SKP+ L+ +
Sbjct: 780 FSKIKTMHPRSLRILLTGHGSSESLEGAINQGEIYRYISKPWDNAHLLETLGAA 833
>gi|307941515|ref|ZP_07656870.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseibium sp. TrichSKD4]
gi|307775123|gb|EFO34329.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseibium sp. TrichSKD4]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ + L L GY+V C G A ++RE LLL D ++P + GIE
Sbjct: 3 KVLIVEDEEPLSLLLKYNLEAEGYQVEVCARGDEADLRLRESLPDLLLLDWMLPGLSGIE 62
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E L V+ +T + + + KPF + +L+ V +L
Sbjct: 63 LCRRIRGREETALLPVIMLTARGEESERIRGLSTGADDYVVKPFSVPELMARVRAILRR 121
>gi|300868512|ref|ZP_07113131.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300333501|emb|CBN58319.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 431
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL+ +D+ + L L GY+V +G +A + + ++L D++MPE+DG
Sbjct: 9 NETILVVDDNSENIELLADLLSGVGYQVAIAKSGKAALECLEFLQPDIILLDVMMPEIDG 68
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R+ + D+ ++F+T + + ++KP + + + L
Sbjct: 69 FETCRQIKSNLANRDIPIIFMTALSDSVNKVKGLSMGAVDYITKPIEYEETLVRIRIQLQ 128
Query: 120 IKN 122
+++
Sbjct: 129 VRD 131
>gi|260467116|ref|ZP_05813295.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
gi|259029128|gb|EEW30425.1| two component transcriptional regulator, winged helix family
[Mesorhizobium opportunistum WSM2075]
Length = 239
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V N A K+ F LL+ D++MP G++
Sbjct: 19 HLLVVDDDTRIRNLLKQYLTENGFRVTVAGNADEARRKLAGLDFDLLVLDVMMPGESGVD 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ ++ +T + L KPF R+L+ +N +L
Sbjct: 79 LTKSLRAE-KNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRR 134
>gi|255020960|ref|ZP_05293016.1| Phosphate regulon transcriptional regulatory protein PhoB
[Acidithiobacillus caldus ATCC 51756]
gi|254969751|gb|EET27257.1| Phosphate regulon transcriptional regulatory protein PhoB
[Acidithiobacillus caldus ATCC 51756]
Length = 247
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ ++ L +L K G++V + A + +R+ L++ D ++P G+
Sbjct: 12 RILVVEDEEGIQELLRLSLQKQGFDVTCVASVEQAEEHLRDPMPHLIVLDWMLPGESGVA 71
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L ++ +T LSKPF R+L V LL
Sbjct: 72 WCRSLRRAERTQSLPIIVLTARGEEGDRVHGLESGADDYLSKPFSPRELGARVQALLRR 130
>gi|229055102|ref|ZP_04195532.1| Two-component response regulator [Bacillus cereus AH603]
gi|228721250|gb|EEL72776.1| Two-component response regulator [Bacillus cereus AH603]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120
>gi|224024386|ref|ZP_03642752.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM
18228]
gi|224017608|gb|EEF75620.1| hypothetical protein BACCOPRO_01110 [Bacteroides coprophilus DSM
18228]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD D+R ++L K Y V + +A K+ + + +L DI++P+ G++
Sbjct: 2 KILIVEDDADLREITTRSLEKERYVVSQAPDYRTALCKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ ++ ++ L KPFHL +L + LL
Sbjct: 62 LLEELKAMGKRTNVIILSAKDSLEDKVQGLDLGADDYLPKPFHLAELHARIKSLLRR 118
>gi|229543190|ref|ZP_04432250.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229327610|gb|EEN93285.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KI++ EDD + R L L Y+ V NG+ A + + E + L+L D+++P +
Sbjct: 1 MS-KIMIVEDDVKIARVLELELQHEHYDTVWVENGSQALNLLESEDWDLVLLDVMIPCLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + V+ +T +V + ++KPF++ +L+ + L
Sbjct: 60 GLEVLRRYRMRNSRTPVILLTARNSVLDKVNGLDHGANDYITKPFNIEELLARIRAALR 118
>gi|95928481|ref|ZP_01311228.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
gi|95135271|gb|EAT16923.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
Length = 223
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + F+ + L + + V NG + L+L DI++P+ DG+
Sbjct: 2 KILVVEDEKKVASFIKRGLEEENFTVDIAANGEEGLYMAESNHYDLILMDIMLPKKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T +V + L+KPF +L+ V L+
Sbjct: 62 VIKELRSKEVTTPVLCLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVKALVRR 118
>gi|309951515|gb|ADO95181.1| phosphate regulon transcriptional regulatory protein PhoB
[Sinorhizobium sp. M14]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+++ ED++ + L L GY V + +G A ++E LL+ D ++P +
Sbjct: 1 MSPKVMIVEDEEALSVLLRYNLEAEGYLVETIGHGEEADIVLQESVPDLLILDWMLPGVS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L V+ +T A L KPF +L+ V LL
Sbjct: 61 GIELCRRLRARPNTERLPVIMLTARGEETERVRGLATGADDYLVKPFSTPELMARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|313617375|gb|EFR89783.1| regulatory protein VanR [Listeria innocua FSL S4-378]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRKNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|262373903|ref|ZP_06067180.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
gi|262310914|gb|EEY92001.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter junii SH205]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQK IL ED+ + L AL + G+ V N GA A + E+ F ++ D+ +P+
Sbjct: 2 MNQKQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQ 61
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ ++ + ++F+T +KPF R++V + +
Sbjct: 62 NGFEVCKQLRQKY-QTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|256422749|ref|YP_003123402.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256037657|gb|ACU61201.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 266
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 49/118 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+ + + K L + G+EV +G + L++ D+ +P +G
Sbjct: 40 QRILVVEDEIKVANTVKKGLEENGFEVDVAYDGRMGKSLAASNNYDLVILDLNLPHANGY 99
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ +T + + L KPF R+L+ + L
Sbjct: 100 EVCEVIRRKNNAIPIIMLTALGGMDDKMQAFELGADDYLVKPFDFRELMARIRVFLKR 157
>gi|238796538|ref|ZP_04640045.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
43969]
gi|238719516|gb|EEQ11325.1| Transcriptional regulatory protein creB [Yersinia mollaretii ATCC
43969]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L ED+ + LI L G+ + + G A + P +L + D+ +P+++G EL
Sbjct: 2 IWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPDINGFEL 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR P+L V+F+T + ++KPF R++ V +L
Sbjct: 62 CRRLLAQMPELPVVFLTARSEELDRIVGLEMGADDYIAKPFSPREVSARVRTVLRR 117
>gi|154500437|ref|ZP_02038475.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
29799]
gi|150270789|gb|EDM98081.1| hypothetical protein BACCAP_04109 [Bacteroides capillosus ATCC
29799]
Length = 224
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + L Y V C +G A++++ E + L++ D+ +P MDG++
Sbjct: 2 KILVVEDERQLCDDIAEDLELERYTVERCYDGLEAWERILVESYDLVILDLNLPGMDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P+L+V+ ++ +++A + L+KPF L +L V LL
Sbjct: 62 ILRSVRREKPELRVLILSARSSLANRVEGLDLGADDYLTKPFELEELEARVRSLLRR 118
>gi|126662999|ref|ZP_01733997.1| two-component response regulator [Flavobacteria bacterium BAL38]
gi|126624657|gb|EAZ95347.1| two-component response regulator [Flavobacteria bacterium BAL38]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L + GY++V+ +NG A ++E L++ D++MP
Sbjct: 1 MKKKDIKILLVDDEQDILEIVGYNLSQEGYQIVTASNGKEAVAMAKKELPQLIIMDVMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG+E + D + F+T + ++KP + LV++V
Sbjct: 61 EMDGMEACEIIRKTPELQDTVITFLTARSEDYSQVAGFDAGADDYIAKPIKPKVLVSKVQ 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|186475652|ref|YP_001857122.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184192111|gb|ACC70076.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|117928482|ref|YP_873033.1| response regulator receiver modulated diguanylate cyclase
[Acidothermus cellulolyticus 11B]
gi|117648945|gb|ABK53047.1| response regulator receiver modulated diguanylate cyclase
[Acidothermus cellulolyticus 11B]
Length = 304
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD MR+FL L GY+V++ +G A V + L+L ++ +P +DGIEL
Sbjct: 2 LVVDDDPAMRQFLETNLRLDGYDVLTAADGPMAVAIVATQLPDLVLLEVGLPGIDGIELT 61
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L V+ +T ++ A ++KPF + +L+ V +
Sbjct: 62 RRWREDSRTATLPVIMVTARSSTADRVLGLQAGADDYVTKPFDVAELLARVRSTMRR 118
>gi|323498131|ref|ZP_08103135.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
gi|323316842|gb|EGA69849.1| transcriptional regulator CpxR [Vibrio sinaloensis DSM 21326]
Length = 231
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G++V NNG + + L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLKEVLSFEGFDVSEANNGEEGLALLTDG-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLRENW-QTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|319652161|ref|ZP_08006280.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
gi|317396150|gb|EFV76869.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++R + L G V+ +G A + + E L++ D++MP++DGI
Sbjct: 6 VLVVDDEKEIRDAIEIYLKNEGITVLKAKDGIEALEILNENQVHLIILDVMMPKLDGISA 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ ++ ++KPF+ +LV V L
Sbjct: 66 TYKIREK-KNIPIIILSAKTEDTDKILGLQVGADDYVTKPFNPMELVARVKSQLRR 120
>gi|283851972|ref|ZP_06369248.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
gi|283572696|gb|EFC20680.1| two component transcriptional regulator, winged helix family
[Desulfovibrio sp. FW1012B]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RRFL L GY V+ +G A + ++L D+ +P+MDG
Sbjct: 5 KKTILIVDDEPPIRRFLSPFLEAEGYAVIEAGSGHEALSLIASHGPDVILLDLGLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + KV+ ++ + + + L+KPF L +L + L
Sbjct: 65 EELLRTL-PVWLRAKVIVLSVRSRERDKVTALDLGASDYLTKPFSLGELAARIRVCLRR 122
>gi|268507216|ref|YP_003294015.1| response regulator [Escherichia coli ETEC H10407]
gi|301050086|ref|ZP_07196995.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|266265537|dbj|BAI49241.1| response regulator [Escherichia coli ETEC H10407]
gi|300298188|gb|EFJ54573.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|309705589|emb|CBJ04441.1| putative two-component response regulator [Escherichia coli ETEC
H10407]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA + + ++ + +L D+++P
Sbjct: 1 MNNAKKILLVEDDYDIATLLRLNLQDEGYQIVHEADGAKSLALLEKQVWDAVLLDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR ++ L V+ I+ + L KPF +++L+ V L
Sbjct: 61 VDGLEICRRIRQMAGYLPVIIISARTSEIHRILGLEMGADDYLPKPFSVQELIARVKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|290959131|ref|YP_003490313.1| two component system response regulator [Streptomyces scabiei
87.22]
gi|260648657|emb|CBG71770.1| putative two component system response regulator [Streptomyces
scabiei 87.22]
Length = 249
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A R+ ++ D+++P+MDG+
Sbjct: 24 RVLVVDDELSITELLSMALRYEGWQIRSAGDGTGALQTARDFRPDAVVLDMMLPDMDGLT 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 84 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 140
>gi|237724991|ref|ZP_04555472.1| two-component system response regulator [Bacteroides sp. D4]
gi|229436729|gb|EEO46806.1| two-component system response regulator [Bacteroides dorei
5_1_36/D4]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + + +G K E+ +L+ D++MP M
Sbjct: 1 MEKIHVLLVEDEQTLAMIIKDTLEEQDFIITTAGDGEEGLRKFFEQKPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG E+ R + D V+F+T +A+ L KPF +++L+ + L+
Sbjct: 61 DGFEMVRHIRQSDKATPVLFLTARSAINDVVKGFELGANDYLKKPFGMQELIVRLKALM 119
>gi|224538238|ref|ZP_03678777.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
14838]
gi|224520170|gb|EEF89275.1| hypothetical protein BACCELL_03129 [Bacteroides cellulosilyticus DSM
14838]
Length = 1472
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ ++R F+ + + V+ NG +K + ++++D++MPE DG
Sbjct: 1209 KETILIVEDNQELRFFIRTIFAQY-FNVIEAENGNIGLEKSKLYMPDIIISDVMMPEKDG 1267
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R + + ++ +T + + + ++KPF L + LL
Sbjct: 1268 IEMVRELRDEMTTSHIPIVMLTAKSTIESKIEGMKLGADDYITKPFSAAYLKARIFNLLE 1327
Query: 120 IK 121
+
Sbjct: 1328 QR 1329
>gi|189463212|ref|ZP_03011997.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
gi|189430191|gb|EDU99175.1| hypothetical protein BACCOP_03925 [Bacteroides coprocola DSM 17136]
Length = 1425
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+D++R F++ L K Y V+ NG +KV E ++++D++MPEMDGIE
Sbjct: 1156 TILVVEDNDELRHFIVHILQKE-YRVLEAPNGRIGLEKVLAEMPDVVVSDVMMPEMDGIE 1214
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + V+ ++ A++ ++KPF L + +L
Sbjct: 1215 LLNAVKTNHNVCHIPVIILSAKASLDDRIKGLEYGADGYITKPFSSAYLRARLKSVL 1271
>gi|163735689|ref|ZP_02143120.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
gi|161391117|gb|EDQ15455.1| DNA-binding response regulator [Roseobacter litoralis Och 149]
Length = 243
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D ++R + + L G + A ++++ F L++ DI+MP DG+
Sbjct: 7 RILVVDDHAEIRHSVTRYLKINGMRATGAKSAADMDAQLKDYTFDLIVLDIMMPGEDGLA 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T L+KPF+ +L+ +N +L
Sbjct: 67 ACARLRRQHQSIPILMLTALGEDDDRIKGLDTGADDYLAKPFNPGELLARINAILRR 123
>gi|187927399|ref|YP_001897886.1| winged helix family two component transcriptional regulator
[Ralstonia pickettii 12J]
gi|241661925|ref|YP_002980285.1| winged helix family two component transcriptional regulator
[Ralstonia pickettii 12D]
gi|309779901|ref|ZP_07674655.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
gi|187724289|gb|ACD25454.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12J]
gi|240863952|gb|ACS61613.1| two component transcriptional regulator, winged helix family
[Ralstonia pickettii 12D]
gi|308921260|gb|EFP66903.1| DNA-binding response regulator [Ralstonia sp. 5_7_47FAA]
Length = 242
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL EDD + L L GY VV +G + ++ + L+ D+++P +DG+
Sbjct: 5 KRVLLVEDDAHIAELLRMHLRDEGYAVVHAADGHAGQREMERGNWDALVLDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA ++ I+ + L+KPF + +LV V L+
Sbjct: 65 EICRRARVQARYTPIIIISARSTEVHRILGLELGADDYLAKPFSVLELVARVKALIRR 122
>gi|170723373|ref|YP_001751061.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169761376|gb|ACA74692.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 241
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+A+DD ++R L L +AG++V + +G + L++ D+++P+ DG
Sbjct: 6 KSILMADDDQEIRELLQTYLSRAGFQVHAEADGQGFRHALENTHCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRQSRVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 125
>gi|115525984|ref|YP_782895.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115519931|gb|ABJ07915.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 238
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN++ IL+ +DD ++R+ L + + + V+ + A +++ E L++ D+++P
Sbjct: 1 MNEQTPQILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRERLATEQIDLVVLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G++ R + ++ +T L+KPF+ R+LV + +
Sbjct: 61 DGSGLDACRDLRAKRNTIPIILLTALKEDVDRILGLEMGADDYLAKPFNPRELVARIRAV 120
Query: 118 LTIKN 122
L ++
Sbjct: 121 LRRRS 125
>gi|42527474|ref|NP_972572.1| sigma-54 dependent transcriptional regulator/response regulator
[Treponema denticola ATCC 35405]
gi|41818059|gb|AAS12483.1| sigma-54 dependent transcriptional regulator/response regulator
[Treponema denticola ATCC 35405]
Length = 473
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+
Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R P + V+ +TG V ++ L+KP L L V R L
Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQN 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|320528447|ref|ZP_08029609.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
gi|320131361|gb|EFW23929.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ +R +IK G+E +G A + + + L++ DI+MP +D
Sbjct: 1 MT-KILIVDDEAKIRELIIKYAKHEGFETAEAADGMEAVELCEKNNYDLVVMDIMMPHLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + P L + ++ + KPF ++L+ ++ +L
Sbjct: 60 GFSAVKEIKKTKPQLPFILLSALGEEYDRIHGFDVGVDDYVVKPFSSKELMMRIHAILKR 119
>gi|303234315|ref|ZP_07320955.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
magna BVS033A4]
gi|302494568|gb|EFL54334.1| putative subtilin biosynthesis regulatory protein SpaR [Finegoldia
magna BVS033A4]
Length = 220
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD+ +R + +L +A + V +C + + + F L++ D++MP+MD
Sbjct: 1 MGQNILVVDDDEQIRSVIETSLKRAQFSVYTCASAKETLS-LSLDQFDLMIFDVMMPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R E D ++F+T + A + A + KPF +LV+ V L
Sbjct: 60 GFELCRNVREK-VDCPILFLTAKSTEADVAEGLAIGGDDYIRKPFTPLELVSRVKAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|171912654|ref|ZP_02928124.1| DNA-binding heavy metal response regulator [Verrucomicrobium
spinosum DSM 4136]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ R FL K L +AGY V +G R+ F L++ D+++P DG
Sbjct: 2 RILIVEDERRSREFLAKGLQEAGYVVDVAGDGEEGLQATRDSAFDLIVLDVMLPVRDGWH 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+F+T +V L KPF + + V LL
Sbjct: 62 VLEHLRTEGCETPVLFLTARDSVPDRVRGLELGADDYLVKPFAWTEFLARVRTLLRR 118
>gi|167768425|ref|ZP_02440478.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
gi|317499213|ref|ZP_07957488.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|167709949|gb|EDS20528.1| hypothetical protein CLOSS21_02984 [Clostridium sp. SS2/1]
gi|291560400|emb|CBL39200.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
gi|316893527|gb|EFV15734.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ + L + +EV +G +K + F +++ DI++P +D
Sbjct: 1 MS-KVLIVEDELSIAELEKDYLELSSFEVEIETDGQQGLEKALKNDFDMIILDIMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E ++ ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKQIREA-KEIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLNR 118
>gi|260062752|ref|YP_003195832.1| putative two-component system sensor kinase/response regulator
fusion protein [Robiginitalea biformata HTCC2501]
gi|88784320|gb|EAR15490.1| putative two-component system sensor kinase/response regulator
fusion protein [Robiginitalea biformata HTCC2501]
Length = 941
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ DMR+F+ L A Y ++ +G L++TD++MP MDG+E+
Sbjct: 696 VLLVEDNPDMRQFICDGLIDA-YRTLTARDGEEGLKLAISRNPDLVITDLMMPRMDGVEM 754
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T A + + L+KPF R+L V L+ +
Sbjct: 755 TEKLKTRIETSHIPVVMLTARAGMENKLEGLETGADDYLTKPFDTRELRVRVANLIRQR 813
>gi|260577651|ref|ZP_05845587.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
gi|258604197|gb|EEW17438.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129
>gi|300774366|ref|ZP_07084230.1| response regulator [Chryseobacterium gleum ATCC 35910]
gi|300507010|gb|EFK38144.1| response regulator [Chryseobacterium gleum ATCC 35910]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL AEDD + + +L Y++ ++G SA + + F + L DI+MP M
Sbjct: 1 MEKSKILYAEDDKTIAFLVEDSLESY-YDISCYSDGESALEAFNSQNFDICLLDIMMPGM 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+A++ + ++ ++FI+ A L KPF + +L+ ++ L
Sbjct: 60 NGFEVAQQIRSKNAEIPIIFISAKALKEDRIKGLKIGADDYLVKPFSIEELMLKIEVFLK 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|226315244|ref|YP_002775140.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226098194|dbj|BAH46636.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++L+ +D++++R + L V +NG A D + E L+L DI+MP+M
Sbjct: 1 MTKYQVLVVDDEEEIRDAIEIYLKNESMTVFKASNGQEALDVLEREDIQLILMDIMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + + ++ ++ ++ + ++KPF+ +L+ V L
Sbjct: 61 DGMTATFQIRQK-KNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNPLELIARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|220906186|ref|YP_002481497.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
gi|219862797|gb|ACL43136.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
Length = 406
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D R L + L + G+ V NG A + + F L+L D++MP+M+G+E
Sbjct: 175 KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQSFDLVLLDVIMPKMNGLE 234
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + D+ V+ I+ V L+KPF+ L + L K
Sbjct: 235 LLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTILLKARIKACLEKK 294
>gi|153853514|ref|ZP_01994894.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
gi|149753669|gb|EDM63600.1| hypothetical protein DORLON_00883 [Dorea longicatena DSM 13814]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+ V N+G K E + LL+ D+++P D
Sbjct: 1 MS-KILIVEDEEAIADLERDYLELSGFTVEVANDGDIGLQKALNEDYDLLILDLMLPGTD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ ++ + ++ ++ ++KPF +LV V L
Sbjct: 60 GFDICRQVRDV-KNTPIVMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|70730633|ref|YP_260374.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68344932|gb|AAY92538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + GY+V + G ++ + P L++ D+++P +DG+++
Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVISRGDQVRERAKASPPDLVILDLMLPGLDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R L ++ +T ++KP R L+ V LL +
Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121
>gi|295703892|ref|YP_003596967.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294801551|gb|ADF38617.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 239
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + R L L GY+V+ + G + + L+L D+++P ++
Sbjct: 1 MKKSILIIEDEVRIARALQIELEHEGYQVLVVHEGKTGLETALNSSIDLILLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + D L ++ +T ++KPF + +++ V L
Sbjct: 61 GIEVLRRIRKKDIYLPIILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLRH 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|294673368|ref|YP_003573984.1| DNA-binding repsonse regulator RprY [Prevotella ruminicola 23]
gi|294472466|gb|ADE81855.1| DNA-binding repsonse regulator RprY [Prevotella ruminicola 23]
Length = 234
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G+ C +G + + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFVAELCADGEAGFKAFLKTKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + D+ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRSANTDVPIIFLTAKTLKEDILEGFKLGADDYITKPFSMEELVFRIEAILRR 122
>gi|294500029|ref|YP_003563729.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294349966|gb|ADE70295.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 224
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+DD+ MR+ + L GY V +G A + ++ L + DI+MP DG E
Sbjct: 3 HILLADDDEHMRQLVRHYLQLEGYVVHEAEDGEEASGLLAKQHIHLAVVDIMMPHKDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D ++ +T + ++KPF ++L+ + LL
Sbjct: 63 VCEEIRSYY-DFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRR 118
>gi|255525004|ref|ZP_05391950.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255511260|gb|EET87554.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD D+R L+ K GY V NG ++ + FSL+L D++MP+MDG
Sbjct: 5 KENILIVDDDRDIREMLVNYFSKEGYAVEQACNGDEGLKVLKAKSFSLILLDVMMPKMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ +T + KPF +L V +L
Sbjct: 65 YTMLCKLRE-SSNIPVILLTAKDQQMDKIKGFINGCDDYIVKPFDFTELSLRVMAILKR 122
>gi|182436428|ref|YP_001824147.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|291447257|ref|ZP_06586647.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|178464944|dbj|BAG19464.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|291350204|gb|EFE77108.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G + +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|168705023|ref|ZP_02737300.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Gemmata obscuriglobus
UQM 2246]
Length = 246
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I++ ED+ +RR + AL +GYEV +GA+ + L+L DI++P+ DG
Sbjct: 3 KARIVVVEDEPAIRRGVSDALRLSGYEVTEAADGATGLREAGAAGVDLVLLDIMLPKRDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ +P V+ +T + + KPF ++L+ V +L
Sbjct: 63 LEVLSELRRTNPTRPVVLLTARGSEDDRVRGLKMGADDYVVKPFSAKELIARVEAILRR 121
>gi|124025854|ref|YP_001014970.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. NATL1A]
gi|112818640|gb|ABI23443.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
gi|123960922|gb|ABM75705.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. NATL1A]
Length = 245
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMP 57
+++L+ EDD +R L +AL GY+V C G A +V + L++ D+++P
Sbjct: 13 KRLLIVEDDKSIRETLREALVAEGYQVEVCKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++GIEL RR + + ++ ++ + + L KPF L +L+ +
Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132
Query: 118 LTI 120
L
Sbjct: 133 LRR 135
>gi|110800300|ref|YP_696779.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|110674947|gb|ABG83934.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 KN 122
K+
Sbjct: 119 KD 120
>gi|323702939|ref|ZP_08114596.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
gi|323532070|gb|EGB21952.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum nigrificans DSM 574]
Length = 451
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+QK +L+ +D++ +R+FL L Y V + NG DK++ +L+TDI MPE+
Sbjct: 1 MSQKLVLVVDDEESVRQFLYDVLTDENYRVETAVNGEECLDKIKRLKPDVLVTDIRMPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DGI L R E ++ V+ +T F + + + KPF+L +N V R
Sbjct: 61 DGITLLERIKEWQLNMPVILMTAFGTTDVAIQAMKLGAFDYIVKPFNLEHFLNLVRRA 118
>gi|312959224|ref|ZP_07773742.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
fluorescens WH6]
gi|311286484|gb|EFQ65047.1| sigma-54 dependent DNA-binding response regulator [Pseudomonas
fluorescens WH6]
Length = 465
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L ALG+ G +V NG A + +E L+++D MP MD
Sbjct: 1 MTHNILVVDDEPKLCDLLASALGQNGIQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L P + V+ +T ++ V S ++KPF + +L V + L
Sbjct: 61 GPALLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|309812580|ref|ZP_07706325.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
gi|308433431|gb|EFP57318.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ L L K GYE G D L+L D+++P M G++
Sbjct: 3 RILIVEDEESYSEPLAYMLKKEGYEAFVAATGPEGIDTFERGGADLVLLDVMLPGMSGVD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCRELRSR-SSVPIIMLTAKDSEIDKVVGLEMGADDYVTKPYSGRELLARIKAVLRRR 119
>gi|302865510|ref|YP_003834147.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315502058|ref|YP_004080945.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|302568369|gb|ADL44571.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315408677|gb|ADU06794.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ +G A R+ ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFVPSFVADGERALAAFRDNRPDIVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVARAIRGE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRR 119
>gi|168208802|ref|ZP_02634427.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|170713070|gb|EDT25252.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 KN 122
K+
Sbjct: 119 KD 120
>gi|196048307|ref|ZP_03115484.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus 03BB108]
gi|196021044|gb|EDX59774.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacillus cereus 03BB108]
Length = 230
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
Q IL+ ED+ +R F++ L +AG+ V+ + G A + R + L D+++P +DG
Sbjct: 2 QTILVLEDELTIRSFIVLNLQRAGFNVLEASTGEEALEIFRTHQAIDIALLDVMLPGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ + + L V+ +T + KPF +L+ + LL
Sbjct: 62 FEVCRKIRDFNDQLGVIMLTACVQNKEIIQGLTMGADDYIEKPFSPTELIARIKSLLRR 120
>gi|74058492|gb|AAZ98835.1| VanRD [Enterococcus gallinarum]
Length = 232
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + P L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGTDALKCIESTPLDLAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSI-ADDYITKPFNPLEVVARVKAQLR 117
>gi|320085312|emb|CBY95095.1| Transcriptional regulatory protein resD [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
Length = 248
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG
Sbjct: 22 SMKILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDG 81
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ R V+ +T +V L KPF +L+ V L
Sbjct: 82 WQVLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|261253471|ref|ZP_05946044.1| response regulator [Vibrio orientalis CIP 102891]
gi|260936862|gb|EEX92851.1| response regulator [Vibrio orientalis CIP 102891]
Length = 240
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M+ KIL+ +DD ++ L + L K Y+V + N+G ++ L+L D+++P
Sbjct: 1 MSAKILVVDDDQEICELLEEYLTKQSYQVSTVNDGEQMKAEIELNGYPDLILLDVMLPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ + ++ +T + ++KPF+ R L + +L
Sbjct: 61 DGFTLCQQTRRQ-SSVPIIMLTAVSDDTDQIIGLEIGADDYIAKPFNPRHLNARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|325981774|ref|YP_004294176.1| two component transcriptional regulator PhoB, winged helix family
[Nitrosomonas sp. AL212]
gi|325531293|gb|ADZ26014.1| two component transcriptional regulator PhoB, winged helix family
[Nitrosomonas sp. AL212]
Length = 242
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ + L KAG+ V+ + A + L+L D ++P++
Sbjct: 1 MAVTILIVEDELAIQELIALNLKKAGHMVLCAGDATHAKLLINNVLPDLVLLDWMLPDIT 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E AR E + ++ +T ++KPF R+L+ + +L
Sbjct: 61 GLEFARSLRREERTKTIPIIMLTARIQENDKIAGLEAGADDYITKPFSPRELLARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|251781809|ref|YP_002996111.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242390438|dbj|BAH80897.1| response regulator [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|322411154|gb|EFY02062.1| response regulator protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|323126621|gb|ADX23918.1| response regulator protein [Streptococcus dysgalactiae subsp.
equisimilis ATCC 12394]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|300771736|ref|ZP_07081610.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300761402|gb|EFK58224.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 64/118 (54%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + + + +A+ + G++ + +G S + FSL++TDI++P++DG++L
Sbjct: 3 ILIIEDDLRVAQLIERAVREQGFQTMLAYDGMSGKKLALQHDFSLIITDIILPKIDGLDL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +L PDL ++ +T + L KPF +R+L+ + LL K+
Sbjct: 63 CKEVRQLKPDLPIIMLTALGTTDNKVEGFDAGADDYLVKPFEMRELIARIRALLKRKD 120
>gi|254421333|ref|ZP_05035051.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196188822|gb|EDX83786.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 257
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--------------PFSL 49
K+LL ED++ +R + +L G+EV +NG A + + SL
Sbjct: 19 KVLLVEDEELIRETVALSLADEGFEVCVADNGQRALEMILGGIERSGAEKPQPVAPDISL 78
Query: 50 LLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
++ D+++P M+G++L R D+ ++ ++ L+KPF +R+
Sbjct: 79 IILDLMLPGMNGLDLCRLVRHQGIDIPILILSAKGTETDRVLGLEVGADDYLTKPFGIRE 138
Query: 110 LVNEVNRLLTI 120
L+ LL
Sbjct: 139 LIARCRALLRR 149
>gi|104774339|ref|YP_619319.1| two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514434|ref|YP_813340.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423420|emb|CAI98293.1| Two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093749|gb|ABJ58902.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
gi|325126134|gb|ADY85464.1| Two-component system regulator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 237
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E
Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T +V + KPF + +L+ + +L
Sbjct: 63 IARRVRQ-SKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|15598400|ref|NP_251894.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|107102734|ref|ZP_01366652.1| hypothetical protein PaerPA_01003801 [Pseudomonas aeruginosa PACS2]
gi|116051194|ref|YP_789975.1| putative two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218890603|ref|YP_002439467.1| putative two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|254236166|ref|ZP_04929489.1| hypothetical protein PACG_02131 [Pseudomonas aeruginosa C3719]
gi|254241892|ref|ZP_04935214.1| hypothetical protein PA2G_02613 [Pseudomonas aeruginosa 2192]
gi|296388309|ref|ZP_06877784.1| putative two-component response regulator [Pseudomonas aeruginosa
PAb1]
gi|313108521|ref|ZP_07794522.1| putative transcriptional regulator in 2-component system
[Pseudomonas aeruginosa 39016]
gi|9949324|gb|AAG06592.1|AE004744_7 probable two-component response regulator [Pseudomonas aeruginosa
PAO1]
gi|115586415|gb|ABJ12430.1| putative transcriptional regulator in 2-component system
[Pseudomonas aeruginosa UCBPP-PA14]
gi|126168097|gb|EAZ53608.1| hypothetical protein PACG_02131 [Pseudomonas aeruginosa C3719]
gi|126195270|gb|EAZ59333.1| hypothetical protein PA2G_02613 [Pseudomonas aeruginosa 2192]
gi|218770826|emb|CAW26591.1| probable two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|310881024|gb|EFQ39618.1| putative transcriptional regulator in 2-component system
[Pseudomonas aeruginosa 39016]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V + ++GA A + E+ ++ D+++P+
Sbjct: 1 MSE-LLLIDDDRELCELLGTWLVQEGFSVRASHDGAQARRALAEQTPDAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRGDHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 TH 121
>gi|332521694|ref|ZP_08398147.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
gi|332042783|gb|EGI78983.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
Length = 227
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K ILLAED+ + + + ++L + V+ C NG A + + LL+ D++MP+
Sbjct: 1 MSNKTTILLAEDEPALGQIIKESLETRNFNVLLCENGEIALETYNLQKPELLVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ E D ++ ++F+T + + L KPF + +L+ +N LL
Sbjct: 61 KDGFTLAKEIRETDNEIPIIFLTAKSQTQDVVEGFHIGGNDYLKKPFSIEELIVRINNLL 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|302552564|ref|ZP_07304906.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302470182|gb|EFL33275.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 268
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A R+ ++ D+++P+MDG+
Sbjct: 43 RVLVVDDELSITELLSMALRYEGWQIRSAGDGQGAIQSARDFRPDAVVLDMMLPDMDGLA 102
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T AV ++KPF L ++V + L+
Sbjct: 103 VLGRLRRELPDVPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEVVARLRGLIRR 159
>gi|239943794|ref|ZP_04695731.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239990247|ref|ZP_04710911.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G + +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLELLREQRPDLVVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|210634507|ref|ZP_03298134.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
gi|210158808|gb|EEA89779.1| hypothetical protein COLSTE_02056 [Collinsella stercoris DSM 13279]
Length = 237
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + L GY+V GA A + E+ F L + DI++P++DG E
Sbjct: 5 RILVVDDEKTITDLVGIYLRNEGYDVTLAYTGADAARLILEQEFDLAVLDIMLPDVDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + A + + + KPF +LV L
Sbjct: 65 LLRTIRTER-TYPVIMLTARDSQADKIEGLSLGADDYMVKPFRPLELVARCKAQLRR 120
>gi|220909913|ref|YP_002485224.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
gi|219866524|gb|ACL46863.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7425]
Length = 406
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D D R + L + GY + +G A K+ P L+L D++MPEMDG E
Sbjct: 14 KILVADDAPDNRFLIEAILEEQGYALDFAEDGREALTKIEAAPPQLVLLDVMMPEMDGYE 73
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + + ++ IT + + KP +L V LL +K
Sbjct: 74 VTRRVRQNPNLSYIPILLITAY-EQVTVAAGLDTGADDFIRKPLEPEELSARVRSLLRLK 132
Query: 122 N 122
+
Sbjct: 133 H 133
>gi|163942563|ref|YP_001647447.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163864760|gb|ABY45819.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 233
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ ++R+ + L GYEV+ +G + V++ L++ DI+MP++
Sbjct: 1 MSKETILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|332521696|ref|ZP_08398149.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
gi|332042785|gb|EGI78985.1| response regulator receiver [Lacinutrix algicola 5H-3-7-4]
Length = 235
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K ILLA+DD D L + L +EV +GA A D + F + + D++MP++
Sbjct: 1 MAEKSILLADDDIDFGTTLKQYLELNKFEVFWAKDGAEALDLFKMHTFDICIIDVMMPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG +L+++ ++ + + +F+T + ++KPF + +L+ +N ++
Sbjct: 61 DGFKLSKKISKKNAETPFLFLTARKTKEDRIKGLSLGADDYITKPFEVEELILRINNIIK 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|330997764|ref|ZP_08321599.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
gi|329569652|gb|EGG51417.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
Length = 1320
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+DD+R ++ + GY VV+ NG + + + ++++DI+MPEMDGI L
Sbjct: 1070 VLVVEDNDDIRDYVASSF-DEGYRVVTAMNGREGWREAQRLVPDIIVSDIMMPEMDGIGL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + V+ +T ++ + L+KPF L + V LL ++
Sbjct: 1129 CRRVKEDVRTSHIPVILLTAKDSIRDKEEGYDSGADSYLTKPFSATLLNSRVRNLLDMR 1187
>gi|312113016|ref|YP_004010612.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
gi|311218145|gb|ADP69513.1| two component transcriptional regulator, winged helix family
[Rhodomicrobium vannielii ATCC 17100]
Length = 244
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD+ +R L L + G+ V +GA+A K+R F L+ D++MP G +
Sbjct: 25 HILVVDDDERIRDLLAGYLRQNGFRVTQAGDGAAARSKLRSIAFDCLILDVMMPGESGFD 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A + D+ ++ +T + ++KPF R+L+ + +L
Sbjct: 85 IAEWLRKE-SDVAILMLTARSEPEHRVRGLELGVDDYVAKPFEPRELLLRLQNILRR 140
>gi|261415718|ref|YP_003249401.1| two component transcriptional regulator, winged helix family
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|261372174|gb|ACX74919.1| two component transcriptional regulator, winged helix family
[Fibrobacter succinogenes subsp. succinogenes S85]
gi|302326913|gb|ADL26114.1| DNA-binding response regulator [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 242
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 49/116 (42%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + L+ GY V +G S + + L+L D+++P MDG +
Sbjct: 10 ILIIEDEIAIAEGLVDLCELNGYRVKHVVDGESGLAEALSGQYGLVLLDLMLPGMDGFTV 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D L ++ ++ + + + KPF + L+ + +L
Sbjct: 70 CDKIREKDKSLPIIILSAKNSDDDIINGLKFGADDYIPKPFSVPMLLARIEAVLRR 125
>gi|240168413|ref|ZP_04747072.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium kansasii ATCC
12478]
Length = 1405
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L A Y V + ++G A +R E L+++D++MP +DG+
Sbjct: 647 RVLVADDNADMREYLTRLLRSADYRVEAVSDGRQALAVIRAEVPDLVISDVMMPRLDGLA 706
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + + V+ ++ A + + L KPF +L+ V
Sbjct: 707 LVAQLRADPRTAAVPVLLLSARAGQEASVEGLDAGADDYLVKPFAATELLARVRA 761
>gi|229592271|ref|YP_002874390.1| putative two-component system response regulatory protein
[Pseudomonas fluorescens SBW25]
gi|229364137|emb|CAY51771.1| putative two-component system, response regulatory protein
[Pseudomonas fluorescens SBW25]
Length = 225
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G++V +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLTSWLSQEGFQVRACHDGLSARKALADSAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ P+L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRNDHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|258655036|ref|YP_003204192.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258558261|gb|ACV81203.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ M L L K G+ NG A + ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESMAEPLAFLLRKEGFSTEIATNGPDALETFDRVGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTEVCKQLRGRGA-VPVIMVTAKDSEIDKVVGLELGADDYITKPYSTRELIARIRAVLRR 118
>gi|182437261|ref|YP_001824980.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|178465777|dbj|BAG20297.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
Length = 250
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +RR + AL + GY V +G + R LL+ D+++PE+DGI L
Sbjct: 21 VLVVEDDATIRRAVQLALERYGYRVDVAADGLDGLEAFRAGAHDLLILDVMLPELDGIGL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E P + V+ ++ + KP +V + LL
Sbjct: 81 CRRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135
>gi|156744264|ref|YP_001434393.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156235592|gb|ABU60375.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 245
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD + L +AG++V + +G + + VR+ L++ D+++P +D
Sbjct: 1 MT-TILLVEDDSVLLETLSYNFERAGFQVTTAADGLTGLEMVRQVRPDLIILDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + R + + ++ +T A + KPF + +L+ V +L
Sbjct: 60 GFSVCRAVAKETA-IPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117
>gi|260061608|ref|YP_003194688.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
gi|88785740|gb|EAR16909.1| response regulator DrrA [Robiginitalea biformata HTCC2501]
Length = 228
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ D+ L L GY+V + NGA +K R++ L++ D++MPEMDGIE
Sbjct: 7 KILLVDDEPDILEILSYNLTSEGYQVYTARNGAEGVEKARKKNPHLIILDVMMPEMDGIE 66
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D + F+T ++KP + +++V LL
Sbjct: 67 ACEIIRKTKGLQDSIIAFLTARNEDYSQVAGFDAGADDYITKPIKPKVFISKVKALLRR 125
>gi|330825319|ref|YP_004388622.1| two component heavy metal response transcriptional regulator
[Alicycliphilus denitrificans K601]
gi|329310691|gb|AEB85106.1| two component heavy metal response transcriptional regulator,
winged helix family [Alicycliphilus denitrificans K601]
Length = 221
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ NG+ + + L++ D+++P +DG +
Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVADLAQNGSDGLHLALQGEYDLVILDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+++T V L KPF +L+ V +L
Sbjct: 62 VLQSLRNRGLQMPVLYLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRTILRR 118
>gi|300726984|ref|ZP_07060404.1| putative histidine kinase [Prevotella bryantii B14]
gi|299775707|gb|EFI72297.1| putative histidine kinase [Prevotella bryantii B14]
Length = 1366
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D DD R F+ + L YEVV NG A +K+ E ++L+D++MP MDG E
Sbjct: 1112 VLLVDDSDDFREFMREELSDH-YEVVEAENGKVALEKIAEHRPHIILSDVMMPVMDGNEF 1170
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---T 119
R ++ V+ +T + + ++KPF + L + L+ +
Sbjct: 1171 CRLLKGNPATANIPVIMLTARLTMLQKIEGLEHGADDYITKPFSMDLLRLRMANLMTWAS 1230
Query: 120 IKN 122
+N
Sbjct: 1231 RQN 1233
>gi|299541675|ref|ZP_07052005.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
gi|298725770|gb|EFI66404.1| DNA-binding response regulator [Lysinibacillus fusiformis ZC1]
Length = 223
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + + + L K GY+V+ N A + L + D++MP MDG
Sbjct: 2 KILVVDDDVHILQLVNIYLTKEGYQVLLAENAKQALALLEGNLPDLAVVDVMMPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L T+ D+ V+ +T + + + KPF ++L+ + +L
Sbjct: 62 LTEYLTQDY-DIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRR 117
>gi|312197790|ref|YP_004017851.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229126|gb|ADP81981.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ L + L + G+ V +G A + E + +++ D+++P +DG E
Sbjct: 2 RVLVVEDEPRTAALLRRGLAEEGFAVDVVADGGDAVWQASEITYDVIVLDLMLPVLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ ++ V L KPF +L + L+
Sbjct: 62 VCRRLRAAERWAPVLMLSARGEVVDRVRGLDVGADDYLGKPFSFDELSARLRALIRR 118
>gi|239905929|ref|YP_002952668.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795793|dbj|BAH74782.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 642
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++LL +D++D+RRFL L GYEV + NG A + S++LTDI MP MD
Sbjct: 1 MSERLLLVDDEEDIRRFLGMFLADLGYEVHAAENGVQALEMFDSVEPSIVLTDIKMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+EL ++ P+ +V+ I+G + L A ++KP + L + R+
Sbjct: 61 GLELLKQIKAKSPETEVVMISGHGDMDLAIGCLQYDAADFVTKPINHDILDAALKRVEEK 120
Query: 118 --LTIK 121
L +
Sbjct: 121 IILRRE 126
>gi|237799640|ref|ZP_04588101.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331022495|gb|EGI02552.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 140
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + AL AGY+ + N A+ + + L+L D ++P GIEL
Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYDCIEAENSQQAHAIIVDRKPDLILLDWMLPGTSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR EL D+ ++ +T ++KPF R+LV + +L
Sbjct: 66 ARRLKRDELTGDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123
>gi|227529760|ref|ZP_03959809.1| response regulator [Lactobacillus vaginalis ATCC 49540]
gi|227350244|gb|EEJ40535.1| response regulator [Lactobacillus vaginalis ATCC 49540]
Length = 229
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE V+ +G A K+ P L++ D++MPEMDG+
Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPVTAYDGKEALTKLNTNPDIGLIILDLMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ + D D+ ++ ++ A ++KPF+ +++ V LL
Sbjct: 62 QVIKQVRK-DSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|256380732|ref|YP_003104392.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255925035|gb|ACU40546.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 226
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ G A ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAALAATGPEALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKQLRQR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|162456898|ref|YP_001619265.1| response regulator [Sorangium cellulosum 'So ce 56']
gi|161167480|emb|CAN98785.1| response regulator [Sorangium cellulosum 'So ce 56']
Length = 270
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 50/118 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + L AL G+ V S + G R+E +L D+++P+ +G
Sbjct: 45 KKILIIEDEPHIVLGLTDALEFEGFSVASASKGKDGVLLARQEKPDAILLDLMLPDTNGF 104
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ D + ++ +T ++KPF + +L+ + L
Sbjct: 105 KVCEDLRRWDAFVPIIMLTARGQEIDKIRGLDAGADDYVTKPFSVGELIARLRALFRR 162
>gi|86609479|ref|YP_478241.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558021|gb|ABD02978.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 239
Score = 144 bits (365), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +DD + L + L + GY V GA ++R +L++ D+ +P++
Sbjct: 1 MS-RILIIDDDPSICALLQRYLQRQGYSVEVAMTGAEGLQQLRAFQPALVILDLNLPDVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ + + V+ +T + A L+KPF L +L V +L
Sbjct: 60 GYDLCQQMQKET-GVYVLMLTSRVSPADKLHGFQLGADDYLTKPFSLPELQARVQAILRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|301059927|ref|ZP_07200811.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
gi|300445982|gb|EFK09863.1| response regulator receiver domain protein [delta proteobacterium
NaphS2]
Length = 386
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 42/117 (35%), Positives = 65/117 (55%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL +D++ +R L AL GYEV++ +G A R++ S++LTDI MP MD
Sbjct: 1 MTEKILLVDDEEGIRTVLGIALADYGYEVLTAASGGEAVSVFRKQKPSIVLTDIKMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI++ R+ E PD +V+ ITG + L +S ++KP + L + R
Sbjct: 61 GIQVLRKIKEESPDTEVIMITGHGDLELAIESLKCDATDFITKPINDDALEIALKRA 117
>gi|298491664|ref|YP_003721841.1| LuxR family two component transcriptional regulator ['Nostoc
azollae' 0708]
gi|298233582|gb|ADI64718.1| two component transcriptional regulator, LuxR family ['Nostoc
azollae' 0708]
Length = 225
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +++LL +DD ++ + L GYEV++ NG A + + E +++ D++MPE
Sbjct: 16 MKDHKRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHEVPDMIICDVMMPE 75
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG + E + V+F++ A + KPF +LV +V
Sbjct: 76 MDGYTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVES 135
Query: 117 LLT 119
L
Sbjct: 136 SLK 138
>gi|220907440|ref|YP_002482751.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219864051|gb|ACL44390.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 240
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 13/130 (10%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-------------FSLL 50
+ILL ED+ ++ L + L GY V ++G +A +K+R + LL
Sbjct: 2 RILLVEDETELALPLSRVLNHEGYSVDIASDGETAIEKLRSAQSNPATQASTSPSTYDLL 61
Query: 51 LTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ D ++P + G+E+ + ++ +T + L KPF LR+L
Sbjct: 62 ILDWILPRLSGLEICQWVRSQRQATPILMLTAKDTLDERVQGLDAGADDYLVKPFELREL 121
Query: 111 VNEVNRLLTI 120
+ V LL
Sbjct: 122 LARVRALLRR 131
>gi|167762926|ref|ZP_02435053.1| hypothetical protein BACSTE_01290 [Bacteroides stercoris ATCC
43183]
gi|167699266|gb|EDS15845.1| hypothetical protein BACSTE_01290 [Bacteroides stercoris ATCC
43183]
Length = 238
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED++ + + L + + + +G + +L+ D++MP M
Sbjct: 1 MDKIKVLLVEDEETLAMIIKDTLEGQSFIIHTAADGEEGLRLFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|163814202|ref|ZP_02205594.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
gi|158450651|gb|EDP27646.1| hypothetical protein COPEUT_00356 [Coprococcus eutactus ATCC 27759]
Length = 235
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
K+L+ +D+ MR+ + L + GY V+ +G A D E+ SL++ D++MP+MDG
Sbjct: 15 KVLMVDDESRMRKLVKDFLTREGYIVLEAGDGEQALDIFMEDKNISLVILDVMMPKMDGW 74
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + + + V+ +T A + ++KPF + LV V +L
Sbjct: 75 ETLKEIRK-FSQVPVIMLTAKADERDELQGFNLGVDEYITKPFSPKILVARVAAILRR 131
>gi|298490278|ref|YP_003720455.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
gi|298232196|gb|ADI63332.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
Length = 374
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D D + L GY++ ++GA+A KV + P L+L D++MP MDG E
Sbjct: 11 RILAVDDTRDNLILVRTLLESEGYKIDLVSDGATALQKVAQSPPDLILLDVMMPGMDGYE 70
Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR PD + ++ IT F + + + KPF +L+ V LL +
Sbjct: 71 VTRRIR-NCPDLNYIPILLITAF-HESSVVEGLDAGADDFIRKPFDTDELLARVRSLLRL 128
Query: 121 KN 122
K+
Sbjct: 129 KH 130
>gi|116695189|ref|YP_840765.1| response regulator [Ralstonia eutropha H16]
gi|113529688|emb|CAJ96035.1| response regulator, OmpR-family [Ralstonia eutropha H16]
Length = 224
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + + +L +AGY V +G A +EP+ ++ D+ +P +DG+
Sbjct: 2 RILLVEDEAALAAQVRASLAEAGYAVDVAADGLDACHLGEQEPYDAVILDLGLPRLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + V+ +T + + L+KPF + +L+ + L+ +
Sbjct: 62 VLRRWRAAQVGVPVLILTARDSWTEKVEGIDAGADDYLAKPFRMEELLARIRALIRRAH 120
>gi|332664021|ref|YP_004446809.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
gi|332332835|gb|AEE49936.1| adenylate/guanylate cyclase [Haliscomenobacter hydrossis DSM 1100]
Length = 1609
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
IL+ +D+ ++ L L KA Y + +G A + ++ L+L D++MP M G
Sbjct: 1199 HILIVDDEVVNQQVLKNFLNKAIYRITQVLSGEEALQVLDDDDTIDLVLLDVMMPRMSGY 1258
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ E +L V+ IT V+ ++KPF + + +N L++
Sbjct: 1259 EVCQKIREKHLPSELPVLMITAKNQVSDLVTGLNTGANDYIAKPFSKDEFLARLNMHLSL 1318
>gi|237756293|ref|ZP_04584848.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
SS-5]
gi|237691541|gb|EEP60594.1| DNA-binding response regulator [Sulfurihydrogenibium yellowstonense
SS-5]
Length = 220
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + R + K L + G+ V +NGA+A + + E + +++ D+++P DG+
Sbjct: 2 RLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPGKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ +T +V L+KPF ++LV + L+ +
Sbjct: 62 ILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120
>gi|212712243|ref|ZP_03320371.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
30120]
gi|212684989|gb|EEB44517.1| hypothetical protein PROVALCAL_03329 [Providencia alcalifaciens DSM
30120]
Length = 227
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)
Query: 1 MNQKI---LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ ++ LL ED D++ +L KAL +G+ V ++G A ++ E +SL++ D+ +P
Sbjct: 1 MSGRLMRMLLVEDHDELSLWLQKALAASGFAVDIASDGYIADQLLQTENYSLVVLDVSLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
M+G+++ + + + V+ +T + VA L+KPF + +L + L
Sbjct: 61 RMNGLDVLAQMRKRHQETPVLLLTANSDVADRVKGLNAGADDYLTKPFDIAELEARIRAL 120
Query: 118 LTIKN 122
L +
Sbjct: 121 LRRSH 125
>gi|212716132|ref|ZP_03324260.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
16992]
gi|212661499|gb|EEB22074.1| hypothetical protein BIFCAT_01047 [Bifidobacterium catenulatum DSM
16992]
Length = 242
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ ++GASA L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAAATLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|182413545|ref|YP_001818611.1| two component transcriptional regulator [Opitutus terrae PB90-1]
gi|177840759|gb|ACB75011.1| two component transcriptional regulator, winged helix family
[Opitutus terrae PB90-1]
Length = 228
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + F++K L + GY V +G + + + DI++PE+DG+
Sbjct: 7 RVLVVEDDAKISSFVVKGLKQEGYAVDHAPDGDTGLALATSTAYDAAVVDIMLPELDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+F++ A+V L+KPF +L + L+
Sbjct: 67 LVRRLRAERSAMPVLFLSARASVEDRVKGLQAGGDDYLTKPFAFAELSARLQALIRR 123
>gi|53719003|ref|YP_107989.1| phosphate regulon two-component system response regulator
[Burkholderia pseudomallei K96243]
gi|53725530|ref|YP_102547.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
23344]
gi|76810912|ref|YP_333028.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1710b]
gi|83719375|ref|YP_443280.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis E264]
gi|121599078|ref|YP_992631.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei SAVP1]
gi|124383508|ref|YP_001026567.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei NCTC 10229]
gi|126438629|ref|YP_001058533.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 668]
gi|126451028|ref|YP_001080148.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei NCTC 10247]
gi|126454333|ref|YP_001065793.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1106a]
gi|134282840|ref|ZP_01769543.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 305]
gi|167002167|ref|ZP_02267957.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei PRL-20]
gi|167582296|ref|ZP_02375170.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis TXDOH]
gi|167621266|ref|ZP_02389897.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis Bt4]
gi|217423497|ref|ZP_03454998.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 576]
gi|226196210|ref|ZP_03791795.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei Pakistan 9]
gi|237811787|ref|YP_002896238.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei MSHR346]
gi|238562776|ref|ZP_00439864.2| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei GB8 horse 4]
gi|242315800|ref|ZP_04814816.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1106b]
gi|254177845|ref|ZP_04884500.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei ATCC 10399]
gi|254180195|ref|ZP_04886794.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1655]
gi|254197520|ref|ZP_04903942.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei S13]
gi|254199458|ref|ZP_04905824.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei FMH]
gi|254205772|ref|ZP_04912124.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei JHU]
gi|254260613|ref|ZP_04951667.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1710a]
gi|254298030|ref|ZP_04965483.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 406e]
gi|254358828|ref|ZP_04975101.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei 2002721280]
gi|257139516|ref|ZP_05587778.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis E264]
gi|52209417|emb|CAH35362.1| phosphate regulon two-component system response regulator
[Burkholderia pseudomallei K96243]
gi|52428953|gb|AAU49546.1| DNA-binding response regulator PhoB [Burkholderia mallei ATCC
23344]
gi|76580365|gb|ABA49840.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1710b]
gi|83653200|gb|ABC37263.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis E264]
gi|121227888|gb|ABM50406.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei SAVP1]
gi|124291528|gb|ABN00797.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei NCTC 10229]
gi|126218122|gb|ABN81628.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 668]
gi|126227975|gb|ABN91515.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1106a]
gi|126243898|gb|ABO06991.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei NCTC 10247]
gi|134245926|gb|EBA46017.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 305]
gi|147749054|gb|EDK56128.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei FMH]
gi|147753215|gb|EDK60280.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei JHU]
gi|148027955|gb|EDK85976.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei 2002721280]
gi|157807759|gb|EDO84929.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 406e]
gi|160698884|gb|EDP88854.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei ATCC 10399]
gi|169654261|gb|EDS86954.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei S13]
gi|184210735|gb|EDU07778.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1655]
gi|217393355|gb|EEC33376.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 576]
gi|225931796|gb|EEH27798.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei Pakistan 9]
gi|237506644|gb|ACQ98962.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei MSHR346]
gi|238521934|gb|EEP85382.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei GB8 horse 4]
gi|242139039|gb|EES25441.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1106b]
gi|243062154|gb|EES44340.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia mallei PRL-20]
gi|254219302|gb|EET08686.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei 1710a]
Length = 233
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|239928855|ref|ZP_04685808.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291437180|ref|ZP_06576570.1| response regulator [Streptomyces ghanaensis ATCC 14672]
gi|291340075|gb|EFE67031.1| response regulator [Streptomyces ghanaensis ATCC 14672]
Length = 221
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L K L GY V ++G + E + L++ DI++P ++G
Sbjct: 2 RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVVLDIMLPGLNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ ++ +T + L+KPF LV V LL +
Sbjct: 62 VCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
>gi|225351867|ref|ZP_03742890.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225157114|gb|EEG70453.1| hypothetical protein BIFPSEUDO_03469 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 242
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ ++GASA L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAATTLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|218899996|ref|YP_002448407.1| regulatory protein VanR [Bacillus cereus G9842]
gi|218544954|gb|ACK97348.1| regulatory protein VanR [Bacillus cereus G9842]
Length = 233
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D+ ++R+ + L GYEV+ +G + V++ L++ DI+MP++
Sbjct: 1 MSKGTILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 61 DGIHMCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|326795286|ref|YP_004313106.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
gi|326546050|gb|ADZ91270.1| two component transcriptional regulator, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 219
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+ + L ALG+ GY V +G A ++ E F L++ D+ +P MDG
Sbjct: 2 RILVVEDDESLGSGLCTALGQDGYTVDWLKDGLHASQALQSEHFDLVILDVGLPRMDGFS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + L ++ V+ +T A+ L KPF + +L V L+
Sbjct: 62 VLKNMRLLKSEIPVLVLTARDAIEDRITGLDAGADDYLVKPFEVDELKARVRALIRR 118
>gi|241889810|ref|ZP_04777108.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
10379]
gi|241863432|gb|EER67816.1| transcriptional regulatory protein SrrA [Gemella haemolysans ATCC
10379]
Length = 238
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+ +D++ +R+ LI L K GY V +NG ++++ +S +L D+ +P ++
Sbjct: 1 MSERILIIDDEERIRKLLIMYLEKEGYIVDEASNGHDGLERLKYMDYSCVLLDVQLPMLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + V+ ++ A + + KPF R+L+ +N +L
Sbjct: 61 GKSILSELRK-TKATPVIIMSAQADEQSRVEGFELGADDYVVKPFSPRELMLRINAILQR 119
>gi|187479256|ref|YP_787281.1| osmolarity two component response regulator [Bordetella avium 197N]
gi|115423843|emb|CAJ50394.1| osmolarity two component response regulator [Bordetella avium 197N]
Length = 233
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + + ++ LL+ D ++P DG +
Sbjct: 7 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLASRITRYAPDLLVLDRMLPGGDGAD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+ +T L KPF R+L+ + +L K
Sbjct: 67 ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRK 124
>gi|72383330|ref|YP_292685.1| two component transcriptional regulator [Prochlorococcus marinus
str. NATL2A]
gi|72003180|gb|AAZ58982.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. NATL2A]
Length = 265
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|88703476|ref|ZP_01101192.1| Phosphate regulon transcriptional regulatory protein phoB
[Congregibacter litoralis KT71]
gi|88702190|gb|EAQ99293.1| Phosphate regulon transcriptional regulatory protein phoB
[Congregibacter litoralis KT71]
Length = 236
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+ +R L AL Y + +N A+ V ++ ++L D ++P
Sbjct: 1 MSERTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGG 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIEL RR D ++ V+ +T A ++KPF R+L+ + L
Sbjct: 61 SGIELLRRLKRDDTTQEIPVIMLTAKTAEDNVIQGLEVGADDYITKPFAPRELIARIKAL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|323698341|ref|ZP_08110253.1| multi-sensor hybrid histidine kinase [Desulfovibrio sp. ND132]
gi|323458273|gb|EGB14138.1| multi-sensor hybrid histidine kinase [Desulfovibrio desulfuricans
ND132]
Length = 1141
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED++ R+ + L G EV NG A + ++ L+L DI MP MDG
Sbjct: 790 KRILLVEDNEINRQVAQEILASVGMEVFEAYNGEKALEFLKGNDVDLVLMDIQMPVMDGH 849
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E RR DL ++ +T A +A S ++KPF DL +NR L+
Sbjct: 850 EATRRIRDQARFKDLPIIAMTAHAMLADIEKSKEVGMNDHIAKPFDPDDLFAVLNRWLS 908
Score = 83.6 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVMPEMDG 61
L+ +D+ R L L G V + +GA A D + F LL+ D MPEMDG
Sbjct: 648 LVVDDNPTSRIILKGMLEYMGLSVTTVKSGAEAIDALHGRRGADAFRLLVVDWRMPEMDG 707
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+E A R + + + ++ + +L +N +L KP + L N V
Sbjct: 708 LETAERILKDEAIAVKPPMFMVSAYGNASLVKRTNELGFRGLLFKPVNQSFLFNLV 763
>gi|297568325|ref|YP_003689669.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
AHT2]
gi|296924240|gb|ADH85050.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfurivibrio alkaliphilus AHT2]
Length = 464
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R + L G+ ++ NG + + EP L+L DI MP +DG+
Sbjct: 7 RRILVVDDEAGIRESMAGILADEGFVALTAENGEQGLELLENEPVDLVLLDIWMPGVDGM 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R +L P L V+ I+G + + + KP ++ +N L +
Sbjct: 67 EILGRLRDLYPHLPVIMISGHGTIETAVQATRMGAYDFIEKPLSYDKVILAINNALRL 124
>gi|168183942|ref|ZP_02618606.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237795825|ref|YP_002863377.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182673003|gb|EDT84964.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229263627|gb|ACQ54660.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 226
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|154504471|ref|ZP_02041209.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
gi|153795246|gb|EDN77666.1| hypothetical protein RUMGNA_01975 [Ruminococcus gnavus ATCC 29149]
Length = 234
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL EDD +R + L Y + NGA A + + ++L D+ +P+M
Sbjct: 1 MNKPLILAVEDDTAVRNLITTTLETQDYRFHTAANGAQAILEAASQKPDIMLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ +L ++ I+ + ++ L+KPF + +L+ + +L
Sbjct: 61 DGVEVIKKIRS-WSNLPIIVISARSEDRDKIEALDAGADDYLTKPFSVEELLARLRVILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|12964066|emb|CAC29257.1| putative regulatory protein [Bartonella taylorii]
Length = 240
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126
Query: 122 N 122
+
Sbjct: 127 S 127
>gi|94310118|ref|YP_583328.1| two component transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93353970|gb|ABF08059.1| two component transcriptional regulator, winged helix family
[Cupriavidus metallidurans CH34]
Length = 266
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL EDD + L L YEVV +GA + + + L+ D+++P +DG+
Sbjct: 24 KRILLVEDDVGIANVLAMHLRDERYEVVHSADGAEGLRLLEQGGWDALVLDLMLPGVDGL 83
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RRA + ++ + ++ L+KPF + +LV V LL
Sbjct: 84 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR 141
>gi|294814643|ref|ZP_06773286.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
ATCC 27064]
gi|294327242|gb|EFG08885.1| Transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
ATCC 27064]
Length = 231
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 11 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 71 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124
>gi|298530357|ref|ZP_07017759.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509731|gb|EFI33635.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 388
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +++ +D + + L + L +GY VV+ +G A + P L+L DI MPEMD
Sbjct: 5 MQKTLMIIDDYPENLKVLQEMLEVSGYRVVAFPSGPLALKAADKNPPDLILLDIKMPEMD 64
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR D ++ V+FI+ V + + A ++KPFH ++ V L
Sbjct: 65 GFEVCRRLKAHDKLKEIPVIFISALDQVQDKIRAFSQGGADYITKPFHPEEVHARVTSHL 124
Query: 119 TIKN 122
K+
Sbjct: 125 ASKS 128
>gi|325265320|ref|ZP_08132045.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324029499|gb|EGB90789.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 234
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +M+ +I+ + K G+ + ++G A ++ P L++ DI+MP +DG +
Sbjct: 16 ILIVEDEKNMQEIMIEYMRKGGHTCFAADDGVDALMLLKNHPMDLMVLDIMMPHLDGFSV 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ A E+ L ++ +T ++ ++KPF R L+ + N LL +
Sbjct: 76 CKMAREM-SSLPIIMLTARSSEDDKLKGYEYGADDYMTKPFSPRVLLAKANALLRRSS 132
>gi|319790723|ref|YP_004152363.1| two component transcriptional regulator winged helix family
[Variovorax paradoxus EPS]
gi|315593186|gb|ADU34252.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus EPS]
Length = 264
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+AED+ + L L G+ V C A + EEP +L + DI +P+++G
Sbjct: 4 KPRILIAEDESGIADTLQYVLKSDGFTPVWCATAEEAIAQFAEEPPALAILDIGLPDLNG 63
Query: 62 IELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
EL +R L+ P++ ++F+T + ++KPF R+LV V
Sbjct: 64 FELFKRLRALNQSQGGPEVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRT 123
Query: 117 LLTI 120
+L
Sbjct: 124 ILRR 127
>gi|313888128|ref|ZP_07821802.1| response regulator receiver domain protein [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845818|gb|EFR33205.1| response regulator receiver domain protein [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 224
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + + + + L +GY V + +G + L++ D+ +P +G E
Sbjct: 2 KILIVEDEEKLLKSIKEGLVHSGYAVDTALDGDEGSFMAFTNSYDLIILDVNLPGKNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D ++ V+ +T + V + KPFH +L + LL K
Sbjct: 62 ILEEIRERDREVNVIMLTALSDVDDRVRGLDLGANDYILKPFHFEELKARIRSLLRRK 119
>gi|295703773|ref|YP_003596848.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294801432|gb|ADF38498.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 239
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ + R L L GY+V + G S + L+L D+++PE+
Sbjct: 1 MQNRILIVEDEEMIARALQIELEHEGYKVFVEHEGKSGLEAALHNSIDLVLLDVMLPELS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR + + L V+ +T ++KPF + +++ V L
Sbjct: 61 GIEVLRRIRKKNAYLPVILLTARDTTLDKVMGLDHGANDYITKPFEIEEVLARVRNSLR 119
>gi|266624703|ref|ZP_06117638.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
gi|288863426|gb|EFC95724.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
Length = 244
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL A+DD ++R + L + GYEVV NG A +K + L++ D++MP G+
Sbjct: 18 KKILFADDDPEIREVVRILLARDGYEVVEAVNGIEAVEKA-DHTIDLIILDVMMPGCSGV 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++F+T + + A L KPF +L VN +L
Sbjct: 77 EACGEIRKK-SSAPILFLTAKSRDRDKEEGFAAGGDDYLVKPFSSVELKARVNAMLRR 133
>gi|182623973|ref|ZP_02951761.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|177910866|gb|EDT73220.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 KN 122
K+
Sbjct: 119 KD 120
>gi|158521941|ref|YP_001529811.1| two component transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158510767|gb|ABW67734.1| two component transcriptional regulator, winged helix family
[Desulfococcus oleovorans Hxd3]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ D+ L +L + GY+V +G A + V L++ D+++P +DG
Sbjct: 3 KEKILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDG 62
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+AR D ++ ++ + ++KPF + L+ + +L
Sbjct: 63 LEVARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLR 122
Query: 120 IK 121
+
Sbjct: 123 RQ 124
>gi|152988873|ref|YP_001347303.1| putative two-component response regulator [Pseudomonas aeruginosa
PA7]
gi|150964031|gb|ABR86056.1| probable two-component response regulator [Pseudomonas aeruginosa
PA7]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V + ++GA A + E+ ++ D+++P+
Sbjct: 1 MSE-LLLIDDDRELCELLGTWLVQEGFCVRASHDGAQARRALAEQTPDAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRGDHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|49474886|ref|YP_032927.1| transcriptional regulator [Bartonella henselae str. Houston-1]
gi|49237691|emb|CAF26878.1| Transcriptional regulator [Bartonella henselae str. Houston-1]
Length = 240
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRR 125
>gi|30265287|ref|NP_847664.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47530822|ref|YP_022171.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49188099|ref|YP_031352.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|65317232|ref|ZP_00390191.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
gi|165869866|ref|ZP_02214523.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167641807|ref|ZP_02400048.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170708959|ref|ZP_02899391.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177654055|ref|ZP_02936065.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190567646|ref|ZP_03020558.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227818024|ref|YP_002818033.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229601800|ref|YP_002869478.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254735190|ref|ZP_05192899.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254755698|ref|ZP_05207731.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254759571|ref|ZP_05211596.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30259965|gb|AAP29150.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47505970|gb|AAT34646.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49182026|gb|AAT57402.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164714189|gb|EDR19709.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167510219|gb|EDR85624.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170126124|gb|EDS95019.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|172080938|gb|EDT66017.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190561062|gb|EDV15035.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227006593|gb|ACP16336.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229266208|gb|ACQ47845.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G ++ E +L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVLERWNEG-PDVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMTRR 117
>gi|332829883|gb|EGK02523.1| hypothetical protein HMPREF9455_01391 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1409
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR+++ L Y+V NG A ++ +++D++MP MDG+E
Sbjct: 1159 TILVVEDNMDMRKYICSILSDY-YKVAEAENGEEALKVLKATAIDFIISDLMMPVMDGLE 1217
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+++ + + +T ++ S + L+KPF L+ +N +L I+
Sbjct: 1218 LSQKVKSDMSTSHIPFLMLTAKTSIETQIGSYKMGADEFLTKPFDEELLLTRINNILEIR 1277
>gi|298247083|ref|ZP_06970888.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297549742|gb|EFH83608.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +DD + L L G++V+ + A D V+ L+ D++MP
Sbjct: 1 MKASVLIVDDDAAIAHLLRDFLKAEGFQVMVATDAEKALDTVQRTSVDCLVLDVMMPGRS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L R E +L ++F++ + + ++K ++V V +L
Sbjct: 61 GFDLCRHIRE-TSNLPILFLSAYDSDKEKLRGFGLGGDDYIAKSASPSEVVARVKAVLRR 119
>gi|294631359|ref|ZP_06709919.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
gi|292834692|gb|EFF93041.1| transcriptional regulatory protein CseB [Streptomyces sp. e14]
Length = 245
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D LL+ DI++P DG+
Sbjct: 19 RRVLVVEDDQTILDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|293370501|ref|ZP_06617054.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292634493|gb|EFF53029.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 1338
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ D+ ++L + + V+ +NG A + + +E ++++D++MPEMDG+E
Sbjct: 1082 TVLLVEDNVDLLNLTRESLAEW-FRVLRASNGREALEVLAQENVDVIVSDVMMPEMDGLE 1140
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1141 LCSKVKSEISYSHIPVILLTAKTTLESKVEGFECGADVYVEKPFSVKQLHMQIENLLKLR 1200
>gi|240169874|ref|ZP_04748533.1| two component transcriptional regulator TrcR [Mycobacterium
kansasii ATCC 12478]
Length = 254
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V +NG A K +L+ DI++P++DG++
Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAIAKFERISPDVLVLDIMLPDVDGLQ 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R E D +F+T +V ++KPF L +LV + LL +
Sbjct: 90 ILQRVRESDDYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148
>gi|220934382|ref|YP_002513281.1| two component heavy metal response transcriptional regulator,
winged helix family [Thioalkalivibrio sp. HL-EbGR7]
gi|219995692|gb|ACL72294.1| two component heavy metal response transcriptional regulator,
winged helix family [Thioalkalivibrio sp. HL-EbGR7]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ V +G + LL+ D+++P MDG
Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGFVVDLARDGLDGLHLATTGDYDLLILDVMLPRMDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ V+F+T AV L KPF +L+ V LL
Sbjct: 62 LLQAVRLSGREMPVLFLTARDAVEDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118
>gi|189465368|ref|ZP_03014153.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
17393]
gi|189437642|gb|EDV06627.1| hypothetical protein BACINT_01717 [Bacteroides intestinalis DSM
17393]
Length = 1295
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ D+R + L K Y++ N + ++ P +++ DI+MP+M+G+E
Sbjct: 1050 ILFIDDNKDLRELIQHILSKK-YQIFIAENALQGLELLKSTPVDIIICDIMMPQMNGLEF 1108
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ +T AV + ++KPF ++ L ++ LL +
Sbjct: 1109 CRQIKGDIQTNHIPIIMLTAKNAVDDQIECYKAGAESYIAKPFEMKILQARIDNLLQSR 1167
>gi|118586652|ref|ZP_01544091.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
gi|118432904|gb|EAV39631.1| two-component response regulator [Oenococcus oeni ATCC BAA-1163]
Length = 241
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E
Sbjct: 20 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A+ +L+ ++ ++F+T + L KP L +L ++ +L N
Sbjct: 80 FAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRAN 138
>gi|91977506|ref|YP_570165.1| response regulator PleD [Rhodopseudomonas palustris BisB5]
gi|91683962|gb|ABE40264.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris BisB5]
Length = 457
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D R L L ++VV+ +NGA A + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANVRLLEARLSAEYFDVVTASNGAQALEICARAECDIVLLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 70.5 bits (173), Expect = 8e-11, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L +++ N + A E + LL+ + + + DG+
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEANPSEALFHAAEGNYDLLIVSLGLEDFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAI-ADAENNARLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|329847724|ref|ZP_08262752.1| phosphate regulon transcriptional regulatory protein PhoB
[Asticcacaulis biprosthecum C19]
gi|328842787|gb|EGF92356.1| phosphate regulon transcriptional regulatory protein PhoB
[Asticcacaulis biprosthecum C19]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I++AED+D + L L K GYE +G A ++E LL+ D +MP++
Sbjct: 1 MRPYIIIAEDEDALSTLLHYNLEKEGYETAMAADGDEALMMIKERQPDLLVCDWMMPKVS 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ RR P +L ++ +T + + + KPF + + + + +L
Sbjct: 61 GIEVCRRLRSASPTRNLPIVMLTARSEESDRIRGLDTGADDYVVKPFSMVEFLARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|228470069|ref|ZP_04054978.1| DNA-binding response regulator RprY [Porphyromonas uenonis 60-3]
gi|228308207|gb|EEK17062.1| DNA-binding response regulator RprY [Porphyromonas uenonis 60-3]
Length = 243
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++ L EDD+ + L + L YEV +G + R++ + L L DI+MP+MDG E
Sbjct: 7 RVFLCEDDESLGIMLQEYLIAKEYEVDLFTDGEMGLEAFRQKKYDLCLIDIMMPKMDGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ L+P++ ++F+T ++KPF +++L + ++
Sbjct: 67 LAKEIRTLEPEIPIIFVTAKDQKKDILAGFKLGADDYITKPFSMQELEARMEAIMRR 123
>gi|221200233|ref|ZP_03573275.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD2M]
gi|221205914|ref|ZP_03578928.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD2]
gi|221209274|ref|ZP_03582255.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD1]
gi|221169962|gb|EEE02428.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD1]
gi|221173926|gb|EEE06359.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD2]
gi|221179574|gb|EEE11979.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans CGD2M]
Length = 246
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + L++ D+++P
Sbjct: 1 MDKPDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRSVLDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T + L+KPF +R+L+ + +
Sbjct: 61 EDGLALCRDLRAGKFRTVPVLMLTARSEETDRIVGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|197119324|ref|YP_002139751.1| winged-helix phosphate transcriptional response regulator
[Geobacter bemidjiensis Bem]
gi|197088684|gb|ACH39955.1| winged-helix phosphate transcriptional response regulator
[Geobacter bemidjiensis Bem]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ D+ + L + GY + ++GA+ + R L+L D+++P M G E
Sbjct: 3 TVLVIEDEKDLADLVAFHLEQEGYCCLVAHDGATGLAEARRCKPDLILLDLMLPGMMGTE 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R EL + V+ +T + KPF R+L+ V +L K
Sbjct: 63 VCRTLKGAELTAGIPVIMLTARGEEIDRVVGFEMGADDYVVKPFSTRELMLRVRAVLRRK 122
>gi|307294458|ref|ZP_07574300.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
gi|306878932|gb|EFN10150.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M I+L EDD +R +AL + GY+V ++G + P L++ D+++P
Sbjct: 1 MTAPTIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVMLPGT 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GI+L R+ D+ ++FI+ + L KPF R+L+ + +L
Sbjct: 61 NGIDLCRQIRRK-SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|283851409|ref|ZP_06368690.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|283573147|gb|EFC21126.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 837
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED++ R + L K G++V +G +A ++V F +L DI MP MDG+
Sbjct: 710 RRILLVEDEETNRDVARRMLEKFGWDVTVAADGQAAVEQVFANHFDCILMDIQMPVMDGV 769
Query: 63 ELARRATELDP-----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R P + ++ +T +A A + +SKPF DL V +
Sbjct: 770 AATRLIRTAVPLGEKRAIPIIAMTAYAMSGDREKFLACGMDEYISKPFEHTDLRAVVEKA 829
Query: 118 LTIK 121
L +
Sbjct: 830 LARR 833
>gi|229590582|ref|YP_002872701.1| response regulator protein [Pseudomonas fluorescens SBW25]
gi|229362448|emb|CAY49354.1| response regulator protein [Pseudomonas fluorescens SBW25]
Length = 220
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDDD + + +AL + GY V +G SA + E F ++ D+ +P MDG+E
Sbjct: 2 RLLLIEDDDALGGGIHQALAREGYTVDWLQDGNSALHALLSETFDAVVLDLGLPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+ +T A L KPF L +L + LL
Sbjct: 62 VLRRLRDSGATVPVLILTARDATEDRIAGLDAGADDYLVKPFDLAELKARLRALLRR 118
>gi|219872086|ref|YP_002476461.1| two component transcriptional regulator/response regulator
consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Haemophilus parasuis
SH0165]
gi|219692290|gb|ACL33513.1| two component transcriptional regulator/response regulator
consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Haemophilus parasuis
SH0165]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L L K+G+ V +G + D + P+ ++ D+ +P+MDG+E
Sbjct: 2 RILLIEDDPLIGEGLKLGLSKSGFSVDWFTDGKTGLDALSSAPYDAVVLDLTLPKMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D+ V+ +T + L KPF L ++V + L+ +
Sbjct: 62 VLQSWRRANQDVPVLILTARDTLDERIMGLQRGADDYLCKPFALAEVVARLQALIRRR 119
>gi|254388535|ref|ZP_05003769.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197702256|gb|EDY48068.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|163849959|ref|YP_001638002.1| response regulator receiver [Methylobacterium extorquens PA1]
gi|163661564|gb|ABY28931.1| response regulator receiver [Methylobacterium extorquens PA1]
Length = 247
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +L+ +DD ++R L L K G V +G + + L++ D++MP
Sbjct: 1 MNHIDHVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R V+ +T + L KPF R+L+ + +
Sbjct: 61 DDGLVLCRELRSGRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|216983|dbj|BAA01502.1| AfsQ1 [Streptomyces coelicolor A3(2)]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD+ +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDEAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|325473731|gb|EGC76920.1| sigma-54 dependent transcriptional regulator/response regulator
[Treponema denticola F0402]
Length = 473
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ ++R L AL GYEV++ +NG + D ++ L++TD+ MPE+
Sbjct: 1 MKFSILVIDDEKNIREGLAMALEDEGYEVITADNGKTGLDIALKDEVDLVITDLKMPEIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R P + V+ +TG V ++ L+KP L L V R L
Sbjct: 61 GEEVLREVISKTPGVPVIVLTGHGTVETAVEAMRMGAYDFLTKPLDLERLFLLVKRALQN 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|313673530|ref|YP_004051641.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
gi|312940286|gb|ADR19478.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
Length = 222
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+D +R + L KAGY+V+ N A + E L++ DI+MP +
Sbjct: 1 MN-KILIVEDEDALRELIAFNLTKAGYDVIESENANDALIFIEEITPDLIILDIMMPGLK 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +L + ++ V+ I+ ++ + + ++KPF ++ L+ ++ LL
Sbjct: 60 GTQLLQLLKRSPKFSNIPVIIISARSSESDIVEGLELGADDYITKPFSMKVLIAKIKILL 119
Query: 119 TIK 121
K
Sbjct: 120 RKK 122
>gi|302843336|ref|XP_002953210.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
nagariensis]
gi|300261597|gb|EFJ45809.1| hypothetical protein VOLCADRAFT_93905 [Volvox carteri f.
nagariensis]
Length = 1844
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 1 MNQKILL--AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVM 56
M ++ LL +DD + + LG GYEVV+ +G A V P L+L D +M
Sbjct: 768 MYKRFLLLSVDDDHVNQSVVKSLLGSTGYEVVAVPSGPEALRYVATAPALPDLVLLDCMM 827
Query: 57 PEMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
PEMDG E+ +R + P + ++ ++ ++KPF +L+ +
Sbjct: 828 PEMDGYEVLQRLRAMTPNVHVPIIMVSAQTEEEHVVCGLDLGADDYVTKPFKRNELLARI 887
Query: 115 NRLL 118
L
Sbjct: 888 RAQL 891
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 6 LLA--EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPE 58
L+ +DDD + L L Y V + GA V P L+L D +P+
Sbjct: 991 LIVCIDDDDVNQVVLQGMLASQHYRYVRASTGAQGLSYVCGTHNGGIPPDLVLLDCSLPD 1050
Query: 59 MDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
M G ++ R ++ + V+ ++ + + ++KPF +L+ + +
Sbjct: 1051 MTGFDVCRCIRQMYNKQQVPVIMLSARHNESAVVEGLKCGANTYVTKPFRRNELLARIRQ 1110
Query: 117 LLTIK 121
L +
Sbjct: 1111 HLRSR 1115
>gi|293115618|ref|ZP_05792356.2| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
2876]
gi|292809129|gb|EFF68334.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
2876]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D+ + + + +L + EV +G A + + + F ++L D+++P++D
Sbjct: 8 MS-RVLVVDDEKAIVKGIKFSLEQDDAEVSCAYDGEEALELAKSQEFDIILLDLMLPKID 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R+ E ++ ++ IT ++KPF++ ++ + ++
Sbjct: 67 GLSVCRQIRE-FSNVPIIMITAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAIMRR 125
>gi|261492521|ref|ZP_05989074.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261496796|ref|ZP_05993170.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261307543|gb|EEY08872.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261311680|gb|EEY12830.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+ +R L L K Y+V+ + SA +K+ E L+L D +MP
Sbjct: 1 MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + + + ++ +T ++ ++KPF + L+ + +
Sbjct: 59 GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|256390046|ref|YP_003111610.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256356272|gb|ACU69769.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 222
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLAEDD + L +AL + GYEV +G A + L++ D+ +P MD
Sbjct: 1 MT-RVLLAEDDAAISEPLARALRREGYEVTVRADGPGAL-LAGQSGVDLVVLDLGLPGMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR V+ +T A ++KPF L +L+ V LL
Sbjct: 59 GLEVCRRLRADGHTFPVLVLTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 118
>gi|163789835|ref|ZP_02184271.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Carnobacterium sp. AT7]
gi|159874775|gb|EDP68843.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Carnobacterium sp. AT7]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + L L K GY V + +G Y+ + ++ D+++P M G+
Sbjct: 2 KKVLIVDDEQSILTLLAFNLEKEGYHVDTALDGLEGYEMALAHAYDFIILDLMLPSMGGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ + D +M +T ++KPF R+++ + ++
Sbjct: 62 DICKKLRQEKIDAPIMMLTAKDDELEKIIGLELGADDYMTKPFSPREVLARMKAIMRR 119
>gi|78358043|ref|YP_389492.1| two component Fis family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78220448|gb|ABB39797.1| two component transcriptional regulator, Fis family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 465
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++L+ +D+D +R L L GYEV G E P L+ DI +P MD
Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+E+ D L V+ I+G + ++ + KP L +V N+
Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKALEY 120
Query: 118 --LTIKN 122
L +N
Sbjct: 121 YRLRREN 127
>gi|312144339|ref|YP_003995785.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
gi|311904990|gb|ADQ15431.1| two component transcriptional regulator, winged helix family
[Halanaerobium sp. 'sapolanicus']
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++R + L AG++V++ +NG A +K+ L++ D+++PE+DG+E
Sbjct: 3 KILIVEDEKNIRELVKFNLEGAGFKVLTASNGKEALEKISTN-IDLVVLDLMLPEIDGME 61
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ +T ++KPF R+L+ + +
Sbjct: 62 VCRRLRADEKLKKIAIIMLTAKGEELERILGLEMGADDYMTKPFSPRELIARIKAIFRR 120
>gi|295108640|emb|CBL22593.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N G +K +E + L++ D+++PE+D
Sbjct: 1 MS-KILIIEDEEAIADLEKDYLELSGFEVEIANRGDVGLEKALKEEYDLIILDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ + ++ ++ ++ ++KPF +LV V +
Sbjct: 60 GFDICRQVRQE-KNIPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMER 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|261406712|ref|YP_003242953.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261283175|gb|ACX65146.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + L L + V + + A+ ++ P ++ DI+MP +G E
Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P + ++F++ + + K ++V V +L
Sbjct: 66 LCRRIRAESP-VPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRR 121
>gi|167836227|ref|ZP_02463110.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia thailandensis MSMB43]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|111022019|ref|YP_704991.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|110821549|gb|ABG96833.1| response regulator, two-component system [Rhodococcus jostii RHA1]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ +R + L G++VV+ ++G SA + +L+ D+++P DG+
Sbjct: 4 RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPSAVAECEASSPDVLVLDVMLPGYDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T A LSKPF +R LV V+ LL
Sbjct: 64 EVCRRVQASRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120
>gi|91786119|ref|YP_547071.1| two component transcriptional regulator [Polaromonas sp. JS666]
gi|91695344|gb|ABE42173.1| two component transcriptional regulator, winged helix family
[Polaromonas sp. JS666]
Length = 240
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ EDD + + + L ++GY +GAS ++ P L++ D+++P+MD
Sbjct: 1 MTQQLLMIEDDSRLAAMVGEYLRQSGYGFTHAADGASGLAALQASPPDLVILDLMLPDMD 60
Query: 61 GIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ RR V+ +T L KPF R+L+ + +
Sbjct: 61 GLEVCRRIKSQGSESAHTAVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|78223889|ref|YP_385636.1| two component transcriptional regulator [Geobacter metallireducens
GS-15]
gi|78195144|gb|ABB32911.1| two component transcriptional regulator, winged helix family
[Geobacter metallireducens GS-15]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ ED+ D+ + L K GY ++ +G S D+ + + L+L D+++P M G
Sbjct: 2 QTVLIIEDEKDLAELVSFNLEKEGYRTIAAPDGISGLDEAQRQVPDLILLDLMLPGMMGT 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + V+ +T + KPF R+L+ + +L
Sbjct: 62 EVCKILKKSEKTAKIPVIMLTARGEEIDRVVGFEVGADDYVVKPFSTRELLLRIKAVLRR 121
>gi|84501127|ref|ZP_00999362.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanicola batsensis HTCC2597]
gi|84391194|gb|EAQ03612.1| phosphate regulon transcriptional regulatory protein PhoB
[Oceanicola batsensis HTCC2597]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V +G A V E +++ D ++P + GIE
Sbjct: 6 TVLVVEDEPAQREVLAYNLEAEGFRVNRAADGEEALMLVDEAAPDIIVLDWMLPSVSGIE 65
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ ++ + + KP+ + +L+ V L
Sbjct: 66 VCRQLKMRTETRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVIELMARVRAQLRR 124
>gi|322517326|ref|ZP_08070201.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
gi|322124023|gb|EFX95576.1| DNA-binding response regulator [Streptococcus vestibularis ATCC
49124]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP
Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVIIMDIMMPIKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + V+ +T A + L+KP L++L+ + L
Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMAEIDDRVTGLDAGADDYLTKPISLKELLARLRS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|318041850|ref|ZP_07973806.1| two-component response regulator [Synechococcus sp. CB0101]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + + + L G + NG A + PF L+L D+ +P +DG+E
Sbjct: 2 KVLIVEDDPVIAGAVAELLQHWGLVTETTGNGLEALALLEASPFDLVLLDLNLPGLDGLE 61
Query: 64 LARRATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+ +T ++ N L KPF L + LL
Sbjct: 62 VCRRLRRMPGNQPLVLMLTARDSLDDNVLGLEQGADDYLVKPFEPALLKARIQALLRR 119
>gi|217966593|ref|YP_002352099.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
gi|217335692|gb|ACK41485.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
Length = 220
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + L L G+EV +G A +V + +++ DI++P + G E
Sbjct: 2 KILVVEDDRKISHLLELELTHEGHEVKVVGDGYDALIEVEDFKPDVVILDIMLPGLSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A+R + PDL ++ +T V ++ + KPF + +L+ + + K
Sbjct: 62 VAKRLRDKYPDLGIIMLTALGDVKDKVEAFKLGADDYVVKPFSIEELLARIQAVSRRK 119
>gi|163783571|ref|ZP_02178561.1| two component transcriptional regulator, winged helix family
protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159881191|gb|EDP74705.1| two component transcriptional regulator, winged helix family
protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ EDD + L + L K G++ + GA A +++ D+++P+ D
Sbjct: 1 MKGKILIVEDDPLIADMLKRYLEKEGFKTYWDSTGAEAVKSFETLKPDVVILDLMLPDTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + D L + +T A ++KPF++R+L+ V LL
Sbjct: 61 GFELCKLFSSTDSML--LILTARDADEDKIVGLELGADDYITKPFNMRELLARVKALLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|149195677|ref|ZP_01872734.1| response regulator receiver domain protein (CheY-like)
[Lentisphaera araneosa HTCC2155]
gi|149141139|gb|EDM29535.1| response regulator receiver domain protein (CheY-like)
[Lentisphaera araneosa HTCC2155]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ D++ L LGK GY+V+ +G+ A L++ D ++P MD
Sbjct: 1 MAKRVLVVDDEPDIQELLKLTLGKEGYDVICTGDGSKAIKMTETHAPDLIILDGMLPGMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ R + ++ ++ ++ ++KPF + L +V+ +
Sbjct: 61 GNDICYRLKNDKSTANIPIIMLSARTDETDQIIGIRLGADDYITKPFSPKVLSAKVSATI 120
Query: 119 TI 120
Sbjct: 121 KR 122
>gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+E+ +G ++K + L+++D++MP +G
Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTVFPDLIISDVMMPRANGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T + +SKPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINRQ 135
>gi|104782904|ref|YP_609402.1| two-component response regulator [Pseudomonas entomophila L48]
gi|95111891|emb|CAK16615.1| putative two-component response regulator [Pseudomonas entomophila
L48]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLGSWLTQEGFAVRACHDGQSARQALATQAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ DL V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHTDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|65320484|ref|ZP_00393443.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain [Bacillus
anthracis str. A2012]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++
Sbjct: 1 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + V+ +T + L KPF +L+ + L+
Sbjct: 61 GLQVLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|320103510|ref|YP_004179101.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
gi|319750792|gb|ADV62552.1| multi-sensor hybrid histidine kinase [Isosphaera pallida ATCC
43644]
Length = 1215
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 50/114 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+RR L L AG+ V + ++G K F L+L D+ MP +DG+E
Sbjct: 865 ILVVEDNPDLRRVLTAFLTAAGWRVETASDGEEGLAKATTTSFDLILMDLQMPRLDGVEA 924
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR ++ +T L+KP +L+ + + L
Sbjct: 925 TRRLRARGVVTPIVALTANDLDGERQRCLEQGFDDYLTKPVGQGELIQRLAQHL 978
>gi|295693549|ref|YP_003602159.1| response regulator [Lactobacillus crispatus ST1]
gi|295031655|emb|CBL51134.1| Response regulator [Lactobacillus crispatus ST1]
Length = 239
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++ + F+ L Y+VV +G A D +E +L+L D ++P DG+
Sbjct: 7 KILLVEDEESVASFVKTELEFEDYQVVWAEDGKKALDFFTQEKPTLILLDWMLPVYDGMT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + D+ ++ +T + + + L+KPF + +L+ + +L
Sbjct: 67 VLRRIRKQ-SDVPIIMLTAKNSASDISSALDQGLDDYLTKPFEIEELLARIRVVLRR 122
>gi|304318103|ref|YP_003853248.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779605|gb|ADL70164.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 224
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ I + +DD ++R ++K + K GY V + +N + ++ +L+ DI+MP MD
Sbjct: 1 MSELIYIIDDDKNIRDLMVKYVEKEGYNVKAFDNAEDVLENFNKDKPDMLILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + ++ D+ ++ ++ + ++KPF R+L+ + +
Sbjct: 61 GYELCKEIRKI-SDVPIIIVSARDEDLDKILGLELGSDDYIAKPFSPRELIARMKSVFRR 119
>gi|237745639|ref|ZP_04576119.1| response regulator receiver:Transcriptional regulatory protein
[Oxalobacter formigenes HOxBLS]
gi|229376990|gb|EEO27081.1| response regulator receiver:Transcriptional regulatory protein
[Oxalobacter formigenes HOxBLS]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R L+ L G++ + ++G A + + F L++ DI++P MDG++
Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+F++ V + L KPF L +L ++ +L
Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKPFSLAELELRISAILRR 119
>gi|229171692|ref|ZP_04299267.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
gi|228611838|gb|EEK69085.1| hypothetical protein bcere0006_8130 [Bacillus cereus MM3]
Length = 231
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 19/120 (15%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +D+ ++ + L Y V A + + + + + DI++P+
Sbjct: 1 MSDKVLVVDDEREIADLVELYLKNENYTVFKYYTAKEALECIDKTELDIAILDIMLPDAS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF +L+ V L
Sbjct: 61 GLTICQKIRDKH-TYPIIMLTAKDTEIDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|229175383|ref|ZP_04302898.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
gi|228608215|gb|EEK65522.1| hypothetical protein bcere0006_44630 [Bacillus cereus MM3]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E ++L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|170741724|ref|YP_001770379.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
gi|168195998|gb|ACA17945.1| two component transcriptional regulator, winged helix family
[Methylobacterium sp. 4-46]
Length = 230
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +DD + + + L GY V +D +R E F ++ D+++P+ D
Sbjct: 1 MAERLLLIDDDRRLAAMVAEYLSAEGYAVACQPTAREGHDALRRERFDAVILDVMLPDGD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + ++ +T L KPF+ R+L+ + LL
Sbjct: 61 GFELCRQIR-THSRVPILMLTAKGEDTDRIIGLEIGADDYLPKPFNPRELLARIRALLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|158321191|ref|YP_001513698.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158141390|gb|ABW19702.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D++D+ + L K Y V + NG A ++ + ++ D+++P++ G
Sbjct: 6 RNILVVDDEEDIVNVIKSYLEKEKYHVFTAYNGNEAIERFHQNSIDFVILDLMLPDLSGE 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ + ++ +T + + KPF ++LV VN +
Sbjct: 66 EICKKIR-IESQVPILMLTAKVDLTDRIYGLDIGADDYMIKPFSPKELVARVNAIWRR 122
>gi|91784528|ref|YP_559734.1| two component transcriptional regulator [Burkholderia xenovorans
LB400]
gi|170695467|ref|ZP_02886612.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|187924829|ref|YP_001896471.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|296158187|ref|ZP_06841019.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|307730483|ref|YP_003907707.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|323526816|ref|YP_004228969.1| two component transcriptional regulator PhoB, winged helix family
[Burkholderia sp. CCGE1001]
gi|91688482|gb|ABE31682.1| two component transcriptional regulator, winged helix family
[Burkholderia xenovorans LB400]
gi|170139658|gb|EDT07841.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|187716023|gb|ACD17247.1| two component transcriptional regulator, winged helix family
[Burkholderia phytofirmans PsJN]
gi|295891523|gb|EFG71309.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|307585018|gb|ADN58416.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
gi|323383818|gb|ADX55909.1| two component transcriptional regulator PhoB, winged helix family
[Burkholderia sp. CCGE1001]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSSILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQNLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|124266470|ref|YP_001020474.1| two component transcriptional regulator [Methylibium petroleiphilum
PM1]
gi|124259245|gb|ABM94239.1| two component transcriptional regulator, winged helix family
[Methylibium petroleiphilum PM1]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED+ + + L AGYEV A + L++ D ++P
Sbjct: 1 MS-RVLVVEDESAIAELISINLRHAGYEVTIAATADQAQLAIDSVLPDLVILDWMLPGQS 59
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LA+R +L V+ +T A L+KPF +L+ + +L
Sbjct: 60 GLALAKRWRGESRTKELPVIMLTARAEEGDKVAGLDAGADDYLTKPFSTHELMARIRAVL 119
Query: 119 TIK 121
K
Sbjct: 120 RRK 122
>gi|332297646|ref|YP_004439568.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
gi|332180749|gb|AEE16437.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
Length = 238
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED ++ + LGK G E V+ + +A+D + L+L D+ +P MD
Sbjct: 1 MKARILVIEDVSELAELVALYLGKEGMEAVTVESAEAAFDALETFSPDLVLLDLNLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + V+ ++ A + ++KPF R LV V ++
Sbjct: 61 GFEFLHKFRKTHS-TPVLIVSARDADEDIISGLGGGADEYITKPFSPRVLVARVRAMIRR 119
>gi|256823505|ref|YP_003147468.1| two component Fis family transcriptional regulator [Kangiella
koreensis DSM 16069]
gi|256797044|gb|ACV27700.1| two component transcriptional regulator, Fis family [Kangiella
koreensis DSM 16069]
Length = 202
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ IL+ +DD +R L +AL A Y+V+SC+NG A + V ++++TDI M
Sbjct: 1 MNEQATILVVDDDSSIRWVLARALHNAEYKVISCDNGTEAIELVNTHQPNIVITDIQMSG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M G+EL + + P L V+ IT +A + ++ L KPF++ ++N + L
Sbjct: 61 MSGLELLEKLNQSHPSLPVIMITAYADTDIGSQTHDLGAFDYLPKPFNINQVINICRKAL 120
Query: 119 TIK 121
+
Sbjct: 121 DSR 123
>gi|269926598|ref|YP_003323221.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269790258|gb|ACZ42399.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + I++ +D+ + +++ + L GY V NG A V + LLL D+ MP M
Sbjct: 1 MKKETIVVVDDEKSILKYISQQLKAKGYNVYPGMNGEEAISLVEQHDPDLLLLDLKMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+E+ +R E + ++ I+ + V ++ + KPFH +L V L
Sbjct: 61 NGLEVCKRLRE-WSKVPIIVISAYDDVEYVVEALNSGADDYVRKPFHQEELFARVKTQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|224368229|ref|YP_002602392.1| transcriptional regulator (FIS family protein) [Desulfobacterium
autotrophicum HRM2]
gi|223690945|gb|ACN14228.1| transcriptional regulator (FIS family protein) [Desulfobacterium
autotrophicum HRM2]
Length = 450
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 54/117 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L G+EV NG A K+ E ++L DI MP MDGIE
Sbjct: 5 ILIVDDEASIIESLEGILADDGFEVSHAFNGYEALKKIEAESPDIVLLDIWMPGMDGIET 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + P+L V+ ITG + D+ L KP + ++ +N L +
Sbjct: 65 LKEIKKNFPNLPVVMITGHGTIEAAVDATKSGAFDFLEKPLSIDKIIVTINNALNFR 121
>gi|197118049|ref|YP_002138476.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
gi|197087409|gb|ACH38680.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
Length = 396
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L GY+V + + + + +E L+L D +MP MDG+
Sbjct: 11 RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLEVIEKERPELVLLDYMMPNMDGLT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ PD V+ TG + + + + + KPF+ +DLV + +L ++
Sbjct: 71 ALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLR 128
>gi|17351934|gb|AAL38203.1|AF319447_1 putative response regulator RR96 [Listeria monocytogenes]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 3 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 63 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122
>gi|71279016|ref|YP_268481.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
34H]
gi|71144756|gb|AAZ25229.1| transcriptional regulatory protein CpxR [Colwellia psychrerythraea
34H]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL +DD ++ L + L ++V SC +GAS K ++ F L+L D++MP ++G
Sbjct: 8 TKHILLIDDDAELSELLTEYLESENFKVTSCLDGASGLAKAFDDSFDLILLDVMMPILNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ +T L+KPF R+L+ + +L
Sbjct: 68 FEVLKALGGNHK-TPILMLTAKGDDNDRILGLELGADDYLAKPFKHRELLARIKAILRR 125
>gi|83999830|emb|CAH60130.1| putative two-component response regulator [Streptomyces
tenjimariensis]
Length = 234
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G S + R + + L D+++P M
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERDGFTVTAMPDGLSGLESFRADRPDIALLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|315304579|ref|ZP_07874825.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
gi|313627057|gb|EFR95944.1| regulatory protein VanR [Listeria ivanovii FSL F6-596]
Length = 231
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEMD
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|260911683|ref|ZP_05918262.1| DNA-binding response regulator [Prevotella sp. oral taxon 472 str.
F0295]
gi|260634180|gb|EEX52291.1| DNA-binding response regulator [Prevotella sp. oral taxon 472 str.
F0295]
Length = 174
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K ILL EDD+++ L + L GY C +G + Y + F + + D++MP+
Sbjct: 1 MDEKLKILLCEDDENLGMLLREYLQAKGYMAELCPDGEAGYKAFLKTKFDICVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +LV V +L
Sbjct: 61 KDGFTLAQEIRQANSEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRVEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229196226|ref|ZP_04322974.1| Two-component response regulator [Bacillus cereus m1293]
gi|228587080|gb|EEK45150.1| Two-component response regulator [Bacillus cereus m1293]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 2 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 62 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117
>gi|228476159|ref|ZP_04060867.1| response regulator ArlR [Staphylococcus hominis SK119]
gi|314936439|ref|ZP_07843786.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
hominis C80]
gi|228269982|gb|EEK11462.1| response regulator ArlR [Staphylococcus hominis SK119]
gi|313655058|gb|EFS18803.1| DNA-binding response regulator ArlR [Staphylococcus hominis subsp.
hominis C80]
Length = 219
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RFL L GY+V +G +K F L++ D+++P ++G+E+
Sbjct: 4 ILIVEDEQNLARFLELELTHDGYKVDIEYDGEPGLEKALNNDFDLIILDLMLPNINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ ++ IT + + KPF + +L + +L +
Sbjct: 64 CRRVRQVQS-TPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQ 119
>gi|213692629|ref|YP_002323215.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|213524090|gb|ACJ52837.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. infantis ATCC 15697]
gi|320458780|dbj|BAJ69401.1| two-component response regulator [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 240
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ +GASA + L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|209514967|ref|ZP_03263836.1| PAS modulated sigma54 specific transcriptional regulator, Fis
family [Burkholderia sp. H160]
gi|209504593|gb|EEA04580.1| PAS modulated sigma54 specific transcriptional regulator, Fis
family [Burkholderia sp. H160]
Length = 595
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED L+ L AG+ V +G SA ++V +L+L D++MP +DG
Sbjct: 20 ILVVEDVPANLSVLLDLLSGAGFTVSVAEDGESALEQVAYAQPALILLDVMMPGLDGFAT 79
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ V+F+TG ++KPF +++ VN L ++
Sbjct: 80 CRRLKANLATREIPVIFMTGLTDTIDKVKGLELGAVDYITKPFQHEEVLARVNTHLELQ 138
>gi|167752240|ref|ZP_02424367.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
gi|167660481|gb|EDS04611.1| hypothetical protein ALIPUT_00482 [Alistipes putredinis DSM 17216]
Length = 389
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D L LGKAGY +V+ G A +KV E L+L DI+MP+M+G
Sbjct: 10 NYKILVVDDIATNVLLLKTILGKAGYRIVTATGGREALEKVESESPDLILLDIMMPDMNG 69
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ R E + V+F++ + +SKPF+ +L+ V +
Sbjct: 70 YEVIERLKADERFCRIPVIFLSALHDSENIVKGFKMGASDYVSKPFNHEELITRVAHHM 128
>gi|148979053|ref|ZP_01815298.1| sensory box sensor histidine kinase/response regulator [Vibrionales
bacterium SWAT-3]
gi|145962026|gb|EDK27314.1| sensory box sensor histidine kinase/response regulator [Vibrionales
bacterium SWAT-3]
Length = 1129
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+A+D+ R L L GY V + +G + + +E LLL DI+MP M G ++
Sbjct: 727 IADDEPVSLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCE 786
Query: 67 RATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L ++ +T LSKPF+ ++L + L+
Sbjct: 787 TLRKQYDHAQLPIIMLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLS 841
>gi|332665137|ref|YP_004447925.1| winged helix family two component transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
gi|332333951|gb|AEE51052.1| two component transcriptional regulator, winged helix family
[Haliscomenobacter hydrossis DSM 1100]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L EDD + L GY++ C +G A D ++ + F L + D+++PE+D
Sbjct: 1 MKAHLLYVEDDASLSFVTRDNLELNGYQITCCADGKEAMDLIKNQRFDLCILDVMLPEVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA+ + D ++ ++F++ + + L+KP+ + +L+ +V L
Sbjct: 61 GFTLAKEIRKYDGEVPILFLSAKSLKEDRLEGLRIGGDDYLTKPYSIEELLLKVEIFLRR 120
Query: 121 KN 122
++
Sbjct: 121 RH 122
>gi|319781847|ref|YP_004141323.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167735|gb|ADV11273.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 238
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD +R L + K G +G +R L++ D+++P G
Sbjct: 4 DAHILIVDDDKGIRDLLQEFFQKRGLHTSVAADGIEMETILRRVQVDLIVLDVMLPGKSG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL R ++ +T + KPF R+L+ + +L
Sbjct: 64 LELCRDLRAQYS-TPIIMLTAVTETTDRVVGLEMGADDYVPKPFDPRELLARIRAVLRR 121
>gi|225376447|ref|ZP_03753668.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
16841]
gi|225211823|gb|EEG94177.1| hypothetical protein ROSEINA2194_02089 [Roseburia inulinivorans DSM
16841]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ D+ L L GY+V NG A + +++E L+L DI+MPEMDGI
Sbjct: 3 RILVCDDEKDIVSALKIYLMADGYQVFEAYNGREALEILKKEDIHLVLMDIMMPEMDGIT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E+ ++ V+ +T + ++KPF+ +L V L
Sbjct: 63 AMLKIREV-SNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNTVELQARVKSQLRR 118
>gi|17231589|ref|NP_488137.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17133232|dbj|BAB75796.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 965
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAED+ + L GYE+V NG A D RE+ L++ DI MP M+G+E
Sbjct: 835 ILLAEDNQANIDTISSYLESRGYEMVLAENGQQALDFAREKCPDLIIMDIQMPGMNGLEA 894
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ D+ ++ +T A + A + L+KP L+ LV + +LL
Sbjct: 895 IRQIRNEQKFIDIPIIALTALAMPSDRTTCLAAGANEYLTKPIKLKQLVLTIQQLLK 951
Score = 47.4 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 16/125 (12%), Positives = 37/125 (29%), Gaps = 10/125 (8%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKA---GYEVVSCNNGASAYDKVREEPFSLLLTD 53
MN +LL + + R + + L + Y+++ + A + E+ ++L D
Sbjct: 1 MNHYVPCTVLLIDKCSEERANMTRHLQQDSLYNYQIIEFSIAKEALNWCLEKTPEIILLD 60
Query: 54 IVMPEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFHLRDL 110
+ + + V+ + L + L K L
Sbjct: 61 FASVNENASIFLEKLRSRLSNSQFTVILLIKPGDEDLAVRAMKSGAQDYLIKNQITPEIL 120
Query: 111 VNEVN 115
+
Sbjct: 121 QRVIR 125
>gi|163938261|ref|YP_001643145.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229009761|ref|ZP_04166983.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|229131266|ref|ZP_04260170.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|163860458|gb|ABY41517.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
gi|228652204|gb|EEL08137.1| Two-component response regulator [Bacillus cereus BDRD-ST196]
gi|228751521|gb|EEM01325.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R + L GY+V+ +G + E L++ DI+MP++DGI
Sbjct: 4 ETILVVDDEKEIRNLITIYLKNEGYKVLQAGDGEEGLRILEENEVHLVVLDIMMPKVDGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 64 HMCMKVREA-KEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 120
>gi|296506631|ref|YP_003667865.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|296327218|gb|ADH10145.1| Two-component response regulator [Bacillus thuringiensis BMB171]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 2 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 62 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117
>gi|293603634|ref|ZP_06686055.1| two component response regulator [Achromobacter piechaudii ATCC
43553]
gi|292818070|gb|EFF77130.1| two component response regulator [Achromobacter piechaudii ATCC
43553]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + ++ LL+ D ++P DG +
Sbjct: 10 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDATDLSSRITRYAPDLLVLDRMLPGGDGAD 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+ +T + KPF R+L+ + +L K
Sbjct: 70 ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 127
>gi|160879024|ref|YP_001557992.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160427690|gb|ABX41253.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ EDD ++ + L GY V NG + ++ E L + DI+MP MDG
Sbjct: 3 SYHVLIVEDDREILEGIGIYLRNQGYTVFQAENGKKGLEIMQNETIHLAIVDIMMPVMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 63 ITMTMKLRENF-DFPVIMLSAKSEEIDKVTGLNIGADDYVTKPFTPMELMARVNSHLRR 120
>gi|89897063|ref|YP_520550.1| hypothetical protein DSY4317 [Desulfitobacterium hafniense Y51]
gi|219667066|ref|YP_002457501.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89336511|dbj|BAE86106.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219537326|gb|ACL19065.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++ FL L G+EV + +G + ++ L++ DI+MP MDG E
Sbjct: 8 KILIIDDEPNILEFLEMGLLNEGFEVQTAADGMTGVTLAKQLHPHLVILDIMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + + ++ ++ +T V ++KPF +L+ ++ I+N
Sbjct: 68 VCRMLKKSE-NVSIIMLTAKDEVEDRVKGLTIGADDYMAKPFSFEELLARIHA--RIRN 123
>gi|312131403|ref|YP_003998743.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
gi|311907949|gb|ADQ18390.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD ++ L L G++V NG A+D + L + D++MP+ D
Sbjct: 1 MKISLLLAEDDPNLGELLQDYLTAKGFQVTLAVNGEQAFDLFCLNEYHLCILDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA+ + + ++F+T + L+KPF + +L+ + ++
Sbjct: 61 GFSLAKDIRLHNEFIPIIFLTAKSMKEDTLKGFEVGADDYLTKPFLMEELLVRIKAIIKR 120
>gi|206971770|ref|ZP_03232719.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
gi|218897743|ref|YP_002446154.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
gi|229179004|ref|ZP_04306361.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
gi|206733155|gb|EDZ50328.1| transcriptional regulatory protein ResD [Bacillus cereus AH1134]
gi|218541190|gb|ACK93584.1| transcriptional regulatory protein ResD [Bacillus cereus G9842]
gi|228604372|gb|EEK61836.1| Two-component response regulator vanRB [Bacillus cereus 172560W]
gi|326940485|gb|AEA16381.1| two-component response regulator VanRB [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 221
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y VV ++G + ++ F L+L D++MP ++G
Sbjct: 3 NYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+++ ++ ++ +T ++KPF L+ V +L
Sbjct: 63 FEVSKMIRSQ-SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120
>gi|218778777|ref|YP_002430095.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
gi|218760161|gb|ACL02627.1| Two-component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
Length = 452
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + L L G+EVV+ NG A ++ + L+L DI MP MDG+E
Sbjct: 5 ILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGLET 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + P + V+ ITG + + + KP + +V +N L +
Sbjct: 65 LKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLSIEKVVVTINNALNFR 121
>gi|219847194|ref|YP_002461627.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219541453|gb|ACL23191.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L G+ V +G SA R L++ DI++P +DGIE
Sbjct: 5 TILVVDDEQPIVDLVSSYLINEGFIVHRAFDGPSALALARSVKPDLVILDIMLPGLDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T A + L+KPF R+LV V +L
Sbjct: 65 VCRQLHRET-TVYVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120
>gi|114320264|ref|YP_741947.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226658|gb|ABI56457.1| two component transcriptional regulator, winged helix family
[Alkalilimnicola ehrlichii MLHE-1]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD +R L+ L +AG+E+ + A + E L+L D ++P++
Sbjct: 1 MAVNILLVEDDAAVREMLLLPLRRAGFEITGVADVAQGKAALLERVPDLILLDWMLPDVS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ AR D+ ++ +T ++KPF R+L+ + +L
Sbjct: 61 GIDWARELKRDPFTRDVPLIMLTARGEEEDKVRGLEVGADDYVTKPFSPRELIARIRAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|329939736|ref|ZP_08289037.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329301306|gb|EGG45201.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 245
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ DI++P DG+
Sbjct: 19 RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|308067994|ref|YP_003869599.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305857273|gb|ADM69061.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q ILL EDD + L+KAL K GY + + +G + + L+L D++MP++D
Sbjct: 1 MSQHILLIEDDLSIAEMLLKALTKEGYSLTTAYDGEEGLLAFKRHTYDLVLVDLMMPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ ++ + ++KPF + ++ + +
Sbjct: 61 GMEVIRRIR-THSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRR 119
>gi|299144918|ref|ZP_07037986.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
gi|298515409|gb|EFI39290.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
Length = 1346
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++D R F+ +L Y V NG A++ ++EE L+++D++MP+MDG EL
Sbjct: 1100 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGKEAWEMMQEELPDLVISDVMMPQMDGNELC 1158
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + ++KPF++ LV + +L+ +
Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIEL 1215
>gi|266623677|ref|ZP_06116612.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
13479]
gi|288864523|gb|EFC96821.1| transcriptional activator protein Irlr [Clostridium hathewayi DSM
13479]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L +AGY + +GA A + + E F L+L DI++P +DG +
Sbjct: 3 KILIVDDEKPICDLIDLNLSEAGYHCRAVQDGAEAVEIIEHERFDLILLDIMLPGIDGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ V+FIT V L KPF + +LV V +L N
Sbjct: 63 IMEYIRPM--EIPVIFITAKYEVRDRVKGLKLGADDYLVKPFDVVELVARVEAVLRRYN 119
>gi|254518186|ref|ZP_05130242.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
gi|226911935|gb|EEH97136.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE++ NNG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLARFIELELKHEGYEILKANNGRTGVEIAEKGEVDLVLLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ V+ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIR-RSSDIPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|225388689|ref|ZP_03758413.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
DSM 15981]
gi|225045287|gb|EEG55533.1| hypothetical protein CLOSTASPAR_02425 [Clostridium asparagiforme
DSM 15981]
Length = 219
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + + L + GY+ S +GA A + + + L+L DI++P DG E
Sbjct: 2 RILVVEDEEMIADIISAGLTRTGYQCESVYDGAEAAGLLEAKRYDLILLDIMLPGADGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+FIT + ++KPF L +L V +L
Sbjct: 62 LMEYIK--NYNTPVIFITARTRLEDKVRGFKLGADDYITKPFELAELTARVEAVLRR 116
>gi|297192015|ref|ZP_06909413.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
gi|197719538|gb|EDY63446.1| response regulator [Streptomyces pristinaespiralis ATCC 25486]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + R L L GY V ++G + E L++ DI++P M+G
Sbjct: 2 RLLIVEDERRLARSLAAGLTAEGYAVDVVHDGLEGLHRATEGVHDLVVLDIMLPGMNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ V+ +T + L+KPF LV V LL +
Sbjct: 62 VCAALRAAGHDVPVLMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
>gi|237713535|ref|ZP_04544016.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262407320|ref|ZP_06083868.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 2_1_22]
gi|229446517|gb|EEO52308.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262354128|gb|EEZ03220.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 2_1_22]
Length = 1353
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++R +L L + + + NG A +K++E +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRHYLSSGLSEL-FNTLDAGNGEEALEKLKENEVDIIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKSETKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|212695545|ref|ZP_03303673.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM
7454]
gi|212677423|gb|EEB37030.1| hypothetical protein ANHYDRO_00062 [Anaerococcus hydrogenalis DSM
7454]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD+ + + L Y + A ++EE F L + DI++P+ D
Sbjct: 1 MNYSVLVVEDDESILDLIEIYLENENYIIKKATCSEEAIRYIKEEEFDLAILDIMLPDKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E + ++ +T + ++KPF +LV V L
Sbjct: 61 GYYLCKKIRESF-NYPIIMLTSKDDESSKIKGLTFGADDYVTKPFLPGELVARVKAQLRR 119
Query: 121 KN 122
N
Sbjct: 120 YN 121
>gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT
9215]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+E+ +G ++K + L+++D++MP +G
Sbjct: 16 RILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T + +SKPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINRQ 135
>gi|157369751|ref|YP_001477740.1| two component transcriptional regulator [Serratia proteamaculans
568]
gi|157321515|gb|ABV40612.1| two component transcriptional regulator, winged helix family
[Serratia proteamaculans 568]
Length = 237
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD ++ L L GY++ +G + + + L+ D+++P +DG+
Sbjct: 5 KKILIVEDDGNIAELLQLHLRDEGYDISHAADGNLGMAMLEQGGWDALILDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RRA + ++ + ++ L+KPF + +LV V L +
Sbjct: 65 EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123
>gi|156935481|ref|YP_001439397.1| DNA-binding response regulator CreB [Cronobacter sakazakii ATCC
BAA-894]
gi|156533735|gb|ABU78561.1| hypothetical protein ESA_03340 [Cronobacter sakazakii ATCC BAA-894]
Length = 230
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ + L ED+ + L + G+ V + G A D R+ L++ D+ +P++
Sbjct: 1 MNQTTVWLVEDETSISEALSYVMQLEGFTVRTFERGLPALDAARQTLPDLVVLDVGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL R+ P L V+F+T + ++KPF R++ V +L
Sbjct: 61 SGFELCRQLLAAHPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|126699391|ref|YP_001088288.1| two-component response regulator [Clostridium difficile 630]
gi|115250828|emb|CAJ68652.1| Two-component response regulator [Clostridium difficile]
Length = 244
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E+ ++ L D+++P++
Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDI 72
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ LL
Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|329115001|ref|ZP_08243756.1| Phosphate regulon transcriptional regulatory protein PhoB
[Acetobacter pomorum DM001]
gi|326695444|gb|EGE47130.1| Phosphate regulon transcriptional regulatory protein PhoB
[Acetobacter pomorum DM001]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +L+ EDD + R + L K GY V +G SA ++VR++ LLL D ++P +
Sbjct: 1 MNKADLLVVEDDPALSRLIGYNLEKQGYAVRVVGDGESALEEVRQKRPDLLLLDWMLPGI 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ R+ L ++ ++ L KPF + L V +
Sbjct: 61 SGLEVCRQLRGQPKTATLPIVMLSARGEETDTIRGLDTGADDYLVKPFSMEALFARVKAM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|325845482|ref|ZP_08168773.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Turicibacter sp. HGF1]
gi|325488501|gb|EGC90919.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Turicibacter sp. HGF1]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
+IL+ +DD + + AL G+E++ C++G A +K+ E SL++ DI+MP+MDG+
Sbjct: 3 RILIVDDDQAIAYLIADALEDEGFEIIICHDGNEALEKIEESCEISLMILDIMMPKMDGL 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL RR + ++F++ + + KPF + +LV V L +
Sbjct: 63 ELCRRVRDQLK-APIIFVSAKSRTLDTLLGLEMGADDYICKPFVVEELVARVKAHLRRE 120
>gi|290891363|ref|ZP_06554424.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429]
gi|290479009|gb|EFD87672.1| hypothetical protein AWRIB429_1814 [Oenococcus oeni AWRIB429]
Length = 224
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E
Sbjct: 3 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A+ +L+ ++ ++F+T + L KP L +L ++ +L N
Sbjct: 63 FAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRAN 121
>gi|227548509|ref|ZP_03978558.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
gi|227079417|gb|EEI17380.1| response regulator [Corynebacterium lipophiloflavum DSM 44291]
Length = 268
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L + G++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDERALAQMVDSYLIRVGFDTRQAHTGIQAVDEARRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|148553326|ref|YP_001260908.1| two component transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148498516|gb|ABQ66770.1| two component transcriptional regulator, winged helix family
[Sphingomonas wittichii RW1]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + AL G+ V ++G SA + + P L + DI MP MD
Sbjct: 1 MTPTIALVDDDRNILTSVSIALQSEGFTVRVYSDGESALKALLDNPPDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR E + +F+T A ++KPF R L+ + +L
Sbjct: 61 GMELLRRLREK-SSIPTIFLTSKDDELDEALGLAMGADDYITKPFSQRLLIARIRAILRR 119
>gi|326796406|ref|YP_004314226.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
gi|326547170|gb|ADZ92390.1| two component transcriptional regulator, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 237
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ L + L + + +NG D++ ++ ++L D++MP+++GI
Sbjct: 2 QHILIIDDDIELTDLLKELLSFENFTISVAHNGEEGLDRI-DDTIDMVLLDVMMPKLNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E DL V+ +T L KPF R+L+ + +L
Sbjct: 61 DTLRRLRE-SSDLPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117
>gi|291549052|emb|CBL25314.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++R + L GY+V +G + + +E L + DI+MP MDGI
Sbjct: 5 HVLIVEDDKEIREGVQIYLQSQGYKVFQAADGIEGLEVLEKEEIHLAIIDIMMPRMDGIR 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 65 MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRR 120
>gi|229830121|ref|ZP_04456190.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
14600]
gi|229791419|gb|EEP27533.1| hypothetical protein GCWU000342_02228 [Shuttleworthia satelles DSM
14600]
Length = 223
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +MRR L+ AL YEVV +G +A + E + L+ D++MP+M G+E
Sbjct: 2 KVLVAEDEQEMRRVLVTALHMNSYEVVDVADGQAALEAACEGTYDCLVFDVMMPKMTGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ ++ +T A V D L+KPF L +L+ + LT +N
Sbjct: 62 ALRQIRAGGDMTPILLLTAKAEVEDRIDGLDAGADDYLTKPFALGELLARIRS-LTRRN 119
>gi|146342861|ref|YP_001207909.1| putative two-component transcriptional regulator [Bradyrhizobium
sp. ORS278]
gi|146195667|emb|CAL79694.1| putative Two-component transcriptional regulator [Bradyrhizobium
sp. ORS278]
Length = 243
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L GY V + + + A K+ F LL+ D++MP G +
Sbjct: 22 HLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVMMPGESGFD 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR + ++ +T + + ++KPF R+L + +L
Sbjct: 82 LARSIRTQ-SSVPIVMLTARSEPESRIEGLQLGADDYVAKPFEPRELALRIGNILKR 137
>gi|52081822|ref|YP_080613.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
14580]
gi|52787209|ref|YP_093038.1| YvrH [Bacillus licheniformis ATCC 14580]
gi|319647739|ref|ZP_08001957.1| YvrH protein [Bacillus sp. BT1B_CT2]
gi|52005033|gb|AAU24975.1| two-component response regulator YvrH [Bacillus licheniformis ATCC
14580]
gi|52349711|gb|AAU42345.1| YvrH [Bacillus licheniformis ATCC 14580]
gi|317390080|gb|EFV70889.1| YvrH protein [Bacillus sp. BT1B_CT2]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+D + + + + L K G+ EV++ ++ A D V+++ L+L D++MP
Sbjct: 3 NATILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQT 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +++ + + F+T + A ++KPF+ +L+ + L
Sbjct: 63 GFDVSPEIRRHT-NAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKR 121
>gi|317126039|ref|YP_004100151.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315590127|gb|ADU49424.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ L L K GY+V G + + L+L D+++P +
Sbjct: 1 MS-RILIVEDEVSFSDPLSYLLRKEGYDVAVAETGPDGLAEFDKNGADLVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ R + + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GIDVCRALRQR-SSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVKAVLRR 118
>gi|229154965|ref|ZP_04283079.1| Two-component response regulator [Bacillus cereus ATCC 4342]
gi|228628523|gb|EEK85236.1| Two-component response regulator [Bacillus cereus ATCC 4342]
Length = 209
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
MR+ + L GYE NG A K+ + ++ DI+MPEMDG+ + + +
Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGLSVCKEIRK-TS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++F+T + + KPF +L+ + +L
Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106
>gi|169349485|ref|ZP_02866423.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
gi|169293560|gb|EDS75693.1| hypothetical protein CLOSPI_00203 [Clostridium spiroforme DSM 1552]
Length = 271
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ IL+ ED+ ++ + + L Y V NNG + + P L + DI+MP M
Sbjct: 34 MNQDNILVVEDEIEIAKAIEIYLKSQNYNVYIANNGLEGLKIIEQHPIHLAIVDIMMPVM 93
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ + E D ++F++ + ++KPF +L+ V+ L
Sbjct: 94 DGIEMTMKIREQY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLR 152
Query: 120 IKN 122
+
Sbjct: 153 RYH 155
>gi|90019939|ref|YP_525766.1| response regulator receiver domain-containing protein
[Saccharophagus degradans 2-40]
gi|89949539|gb|ABD79554.1| response regulator receiver [Saccharophagus degradans 2-40]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD + +++ L Y V + G A + L+L DI++P DG E
Sbjct: 9 TILLVEDDASLAQWIADYLTNNNYHVTTVMRGDEAVKVILTTKPDLVLLDIMLPGKDGFE 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + P+ ++ +T ++KP R LV + LL
Sbjct: 69 VCKEVRASYPN-PILMMTARDDEIDEVLGLEIGANDYITKPVRPRALVARIKSLLK 123
>gi|86605898|ref|YP_474661.1| LuxR family DNA-binding response regulator [Synechococcus sp.
JA-3-3Ab]
gi|86554440|gb|ABC99398.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
JA-3-3Ab]
Length = 210
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL +DD ++ + L GYEVV+ +NG + +R L++ D++MPEMDG
Sbjct: 5 KRLLLIDDDPNLILLVKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + V+F++ A L KPF +LV +V +L
Sbjct: 65 TFVQTIRSNSATDWIPVIFLSARGQTADRVRGLNTGADVYLVKPFEPEELVAQVESVLK 123
>gi|254188385|ref|ZP_04894896.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei Pasteur 52237]
gi|157936064|gb|EDO91734.1| phosphate regulon transcriptional regulatory protein PhoB
[Burkholderia pseudomallei Pasteur 52237]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 3 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 62
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 63 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 122
Query: 119 TIK 121
+
Sbjct: 123 RRR 125
>gi|331702134|ref|YP_004399093.1| winged helix family two component transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329129477|gb|AEB74030.1| two component transcriptional regulator, winged helix family
[Lactobacillus buchneri NRRL B-30929]
Length = 231
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58
M ILL ED++ + +LI L Y+V+ +G A L++ D ++P+
Sbjct: 1 MTNTILLVEDEEALSSYLIPELKFEDYQVLLAKDGLEALQVYDNNRGNLDLIILDWMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR + D D+ V+ +T V ++KPF + +L+ + +L
Sbjct: 61 LDGLEVLRRIRKND-DIPVIMMTARDYVGDKVAGLDSGADDYITKPFEIEELLARIRVVL 119
Query: 119 TIKN 122
++
Sbjct: 120 RHES 123
>gi|317133437|ref|YP_004092751.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315471416|gb|ADU28020.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++R L + G+EV +G A RE+ F ++ D++MP++D
Sbjct: 1 MS-KILIVDDETNIRAGLREYAEFEGHEVTEAGDGMEAVTICREQDFDAIIMDVMMPKLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + D+ V+ ++ + KPF ++++ + +++
Sbjct: 60 GFSACKEIRK-TKDIPVLMLSARGEEYDKLFGFEVGVDDYVVKPFSPKEVMARLRVIISR 118
>gi|258648005|ref|ZP_05735474.1| DNA-binding response regulator RprY [Prevotella tannerae ATCC
51259]
gi|260851850|gb|EEX71719.1| DNA-binding response regulator RprY [Prevotella tannerae ATCC
51259]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GYE C +G + Y F + + D++MP
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYETELCPDGDAGYKAFISGKFDICVLDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG L + + + ++ ++F+T + L+KPF + +L + +L
Sbjct: 61 KDGFTLGKEIRQSNEEIPIIFLTAKTMKEDVQEGFKIGADDYLTKPFSMEELTLRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229590186|ref|YP_002872305.1| response regulator protein [Pseudomonas fluorescens SBW25]
gi|229362052|emb|CAY48953.1| response regulator protein [Pseudomonas fluorescens SBW25]
Length = 249
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + GY+V + G ++ R P L++ D+++P +DG+++
Sbjct: 20 ILLVEDDAALSELIASYLERNGYQVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 79
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R L ++ +T ++KP R L+ V LL +
Sbjct: 80 CRLLRADSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 137
>gi|182416533|ref|ZP_02947960.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237668894|ref|ZP_04528878.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379605|gb|EDT77087.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237657242|gb|EEP54798.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 234
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ + L GY V NG + + +E L + DI+MP+MDGI +
Sbjct: 6 ILIVEDEKEICDGIEIYLKNQGYTVFKAYNGIEGLEIIEKEKIHLAIVDIMMPKMDGITM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D V+ ++ + ++KPF+ +L+ VN L
Sbjct: 66 VMKLREQH-DFPVIMLSAKSEEMDKIMGLNIGADDYVTKPFNPMELIARVNSQLRR 120
>gi|167562371|ref|ZP_02355287.1| two component transcriptional regulator, winged helix family
protein [Burkholderia oklahomensis EO147]
gi|167574332|ref|ZP_02367206.1| two component transcriptional regulator, winged helix family
protein [Burkholderia oklahomensis C6786]
Length = 233
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + L+L D ++P
Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAQSLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|150024463|ref|YP_001295289.1| two-component system response regulatory protein involved in
phosphate regulation [Flavobacterium psychrophilum
JIP02/86]
gi|149771004|emb|CAL42471.1| Two-component system response regulatory protein involved in
phosphate regulation [Flavobacterium psychrophilum
JIP02/86]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +ILL +D+ D+ + L + GY++ + NG A K ++ L++ D++MP
Sbjct: 1 MKKKEIRILLVDDEPDVLEIVGYNLSQEGYQIFTAENGKEAVQKAKKHNPHLIIMDVMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG+E + ++ + F+T ++KP + LV++V
Sbjct: 61 EMDGMEACEIIRKVPELNNVIITFLTARNEDYSQVAGFDAGADDYIAKPIKPKLLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|89896373|ref|YP_519860.1| hypothetical protein DSY3627 [Desulfitobacterium hafniense Y51]
gi|219667799|ref|YP_002458234.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89335821|dbj|BAE85416.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538059|gb|ACL19798.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ ED+D +R ++ L + GY+ + +G A + L++ DIV+P++D
Sbjct: 5 MN-KVLVVEDEDILREVIVDYLVENGYQALEAADGEKALELFLANSVDLVILDIVLPKVD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + RR + + ++ +T + + L KP+ R L+ +V R L
Sbjct: 64 GWSVCRRIR-RNSGIPIIILTARSDEDDSLLGYELGADDYLIKPYSPRVLMAKVKRFLE 121
>gi|322372348|ref|ZP_08046884.1| DNA-binding response regulator DltR [Streptococcus sp. C150]
gi|321277390|gb|EFX54459.1| DNA-binding response regulator DltR [Streptococcus sp. C150]
Length = 228
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILLAED++ + R AL GYEV NG A D E + +++ DI+MP
Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAENAYQVMIMDIMMPIKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE R V+ +T A + L+KP L++L+ + L
Sbjct: 61 GIEALREIRSTGNTTHVIMLTAMAEIDDRVTGLDAGADDYLTKPMSLKELLARLRS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|225388657|ref|ZP_03758381.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
DSM 15981]
gi|225045255|gb|EEG55501.1| hypothetical protein CLOSTASPAR_02393 [Clostridium asparagiforme
DSM 15981]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 48/120 (40%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D+ ++ + L +V +G A + F L + DI++P++
Sbjct: 1 MLEKILVVDDEKEIADLIEVYLQNENMDVYKFYSGEEALVCIGSTDFDLAILDIMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+ ++ ++KPF +LV V L
Sbjct: 61 GLSICQSIRSKEYTYPVIMLSAKDGETDKITGLTLGADDYITKPFLPLELVARVKAQLRR 120
>gi|218439149|ref|YP_002377478.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
gi|218171877|gb|ACK70610.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
Length = 384
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L K GY V NG A V P ++L DI MP M+G ++
Sbjct: 8 ILVVDDTPDNLRLLAAMLSKKGYTVRKALNGQIAIATVHSVPPDIILLDINMPNMNGYQV 67
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ ++FI+ V + ++KPF +++ + LTI
Sbjct: 68 CQTLKADEQTKDIPIIFISALDDVIDKVKAFNMGGVDYITKPFQGEEVIARIENQLTI 125
>gi|170761512|ref|YP_001787695.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169408501|gb|ACA56912.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V +NG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKADNGRTGLEIAEKGEIDLILLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|158334669|ref|YP_001515841.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158304910|gb|ABW26527.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 225
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + +AL +GY V ++G + + + E + ++L D ++P++DG+
Sbjct: 2 RLLLVEDDYPLAAVFAEALEDSGYIVDVVHDGEAGWYQATESEYGIILLDCMLPKLDGLG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + ++ +T A L KP L +L+ + +L
Sbjct: 62 LCQRLRAHGYTIPILMMTARDASTDKVLGLDAGADDYLVKPVDLPELLARIRAVLRR 118
>gi|83816732|ref|YP_444717.1| response regulator DrrA [Salinibacter ruber DSM 13855]
gi|294506480|ref|YP_003570538.1| response regulator DrrA [Salinibacter ruber M8]
gi|83758126|gb|ABC46239.1| response regulator DrrA [Salinibacter ruber DSM 13855]
gi|294342808|emb|CBH23586.1| response regulator DrrA [Salinibacter ruber M8]
Length = 237
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ D+ + L + GY V + +G A + L++ DI++P +DG E+
Sbjct: 12 VLVVDDEKDVVEVVGHFLEEEGYTVHTAFDGEEALETA-SGKIDLIVLDIMLPGVDGYEV 70
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++F++ + L+KP + LV V +L
Sbjct: 71 CRELRDSVETEEIPIVFLSAKTEEEDQIEGLMLGGDDYLTKPVSPQVLVAHVKAVLRR 128
>gi|16329618|ref|NP_440346.1| CheY family protein [Synechocystis sp. PCC 6803]
gi|1652101|dbj|BAA17026.1| CheY subfamily [Synechocystis sp. PCC 6803]
Length = 147
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +LL ED R + L G++V +G A +K++ L++ DIVMP M+
Sbjct: 27 MNA-VLLVEDSSSQREMISGILKDHGWQVTIACDGVEALEKLQNFSPDLVVLDIVMPRMN 85
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR ++ V+ + ++KPF +LV + +LL
Sbjct: 86 GYEVCRRIKSDPKTKNVPVIMCSSKGEEFDRFWGMRQGADAYIAKPFQPMELVGTIKQLL 145
Query: 119 T 119
Sbjct: 146 R 146
>gi|18311081|ref|NP_563015.1| two-component response regulator [Clostridium perfringens str. 13]
gi|5103040|dbj|BAA78773.1| Response regulator protein VirI [Clostridium perfringens]
gi|18145764|dbj|BAB81805.1| two-component response regulator [Clostridium perfringens str. 13]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 KN 122
K+
Sbjct: 119 KD 120
>gi|298207240|ref|YP_003715419.1| two-component system, transcriptional regulatory protein
[Croceibacter atlanticus HTCC2559]
gi|83849876|gb|EAP87744.1| two-component system, transcriptional regulatory protein
[Croceibacter atlanticus HTCC2559]
Length = 234
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILLA+DD D L + L +EV +G A+D ++ F + + D++MP++D
Sbjct: 1 MEKRILLADDDIDFGTTLKQYLELNKFEVFWAKDGVEAFDLLKMHSFDICIVDVMMPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L+++ ++ P +F+T + +SKPF + +L+ +N ++
Sbjct: 61 GFSLSKKISKKFPATPFLFLTARKNKPDRIKGLSIGADDYISKPFEVEELILRINNIIKR 120
>gi|228987919|ref|ZP_04148027.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229158275|ref|ZP_04286342.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
gi|228625233|gb|EEK81993.1| hypothetical protein bcere0010_44530 [Bacillus cereus ATCC 4342]
gi|228771842|gb|EEM20300.1| hypothetical protein bthur0001_45860 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|182412781|ref|YP_001817847.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
gi|177839995|gb|ACB74247.1| response regulator receiver sensor signal transduction histidine
kinase [Opitutus terrae PB90-1]
Length = 372
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D + R L L GY++V +G A ++ P L+L D++MP +DG E
Sbjct: 12 RILVVDDQETNLRVLGDMLAHLGYDIVPALDGEQALRRLSSRPVDLILLDVLMPGLDGFE 71
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++F++ +L + ++KPF+ +L++ V L +K
Sbjct: 72 VCRRIRSNVAWIDIPIIFLSAADDKSLIVRALESGGVDYITKPFNAAELLSRVRTHLALK 131
>gi|167751398|ref|ZP_02423525.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
gi|167655644|gb|EDR99773.1| hypothetical protein EUBSIR_02389 [Eubacterium siraeum DSM 15702]
Length = 227
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L AED+ M + L Y V + +GA A D R E + ++ DI+MP+ G+E
Sbjct: 2 KLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T A V L KPF + +L++ V +L K+
Sbjct: 62 VLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120
>gi|297528706|ref|YP_003669981.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297251958|gb|ADI25404.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+K ILL +DD+D+ + + L Y+V + ++G A + F L++ DI+M +
Sbjct: 1 MNKKKILLVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMM-NNDFDLIVLDIMMEGI 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+EL R E D+ ++F++ + A ++KPF L++L ++ L
Sbjct: 60 DGMELCRLIRER-VDVPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDCHLR 118
Query: 120 IK 121
+
Sbjct: 119 RE 120
>gi|227823552|ref|YP_002827525.1| two component transcriptional regulator [Sinorhizobium fredii
NGR234]
gi|227342554|gb|ACP26772.1| two component transcriptional regulator [Sinorhizobium fredii
NGR234]
Length = 232
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +DD + L L GY V + + + ++ D+++P++D
Sbjct: 1 MAERVLIVDDDTRLSAMLADYLSGNGYTVKTAATATAGLTDLGRRAPDAVILDVMLPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E RR + D+ ++ +T L KPF+ R+L+ + +L
Sbjct: 61 GFETCRRIRAV-SDVPILMLTAKGEETDRIVGLELGADDYLPKPFNPRELLARLKAILRR 119
Query: 121 KN 122
+N
Sbjct: 120 RN 121
>gi|261856400|ref|YP_003263683.1| transcriptional regulator [Halothiobacillus neapolitanus c2]
gi|261836869|gb|ACX96636.1| two component transcriptional regulator, winged helix family
[Halothiobacillus neapolitanus c2]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD D+R L L GY V+ G+ + ++ L++ D+++P DG+
Sbjct: 2 KTILVVDDDADLRSLLRAYLTDQGYHVIEAAEGSELWTRLENSTVDLIILDLMLPGEDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ +T + KPFH R+L+ + +
Sbjct: 62 ALCRTIRARQ-TTPILMLTARGDEMDRIIGLEMGADDYMPKPFHPRELLARIRSIFRR 118
>gi|68536518|ref|YP_251223.1| two-component system response regulator TcsR4 [Corynebacterium
jeikeium K411]
gi|68264117|emb|CAI37605.1| two-component system response regulator TcsR4 [Corynebacterium
jeikeium K411]
Length = 240
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 14 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGPQAVDETRRFSPDVVVLDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 74 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 129
>gi|84393277|ref|ZP_00992038.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
gi|84376102|gb|EAP92989.1| putative transcriptional regulator CpxR [Vibrio splendidus 12B01]
Length = 222
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P +
Sbjct: 1 MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSHPVDLVLLDVMLPNLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ARR + ++ +T A D + ++KPF++ +L+ + +L
Sbjct: 61 GIQVARRICQRFA-TPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119
>gi|310640765|ref|YP_003945523.1| response regulators consisting of a chey-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
gi|309245715|gb|ADO55282.1| Response regulators consisting of a CheY-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
Length = 235
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD + L+KAL K GY + + ++G + + L+L D++MP++D
Sbjct: 1 MPQHILLIEDDLSIAEMLLKALTKEGYNLTTASDGEEGLNAFERHTYDLVLVDLMMPKVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R+ + ++ ++ + ++KPF + ++ + +
Sbjct: 61 GMEVIRQIR-TRSAVPILIMSAKDSDVDKALGLGFGADDYVAKPFSMLEMTARIQSAIRR 119
>gi|294012565|ref|YP_003546025.1| two-component system response regulator OmpR [Sphingobium japonicum
UT26S]
gi|292675895|dbj|BAI97413.1| two-component system response regulator OmpR [Sphingobium japonicum
UT26S]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I+L EDD +R +AL + GY+V ++G + P L++ D+++P +GI+
Sbjct: 5 TIILVEDDPPLRTLTARALQEHGYQVRPASSGPEMWVAFDAGPVDLVVLDVMLPGTNGID 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ ++FI+ + L KPF R+L+ + +L
Sbjct: 65 LCRQIRRK-SDVPIIFISAKGSETDRIVGLELGADDYLPKPFGTRELIARIRAILRR 120
>gi|229076178|ref|ZP_04209146.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
gi|229099149|ref|ZP_04230083.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
gi|229105297|ref|ZP_04235946.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
gi|229118159|ref|ZP_04247518.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
gi|228665382|gb|EEL20865.1| hypothetical protein bcere0017_44280 [Bacillus cereus Rock1-3]
gi|228678223|gb|EEL32451.1| hypothetical protein bcere0019_44310 [Bacillus cereus Rock3-28]
gi|228684377|gb|EEL38321.1| hypothetical protein bcere0020_43720 [Bacillus cereus Rock3-29]
gi|228707041|gb|EEL59246.1| hypothetical protein bcere0024_43750 [Bacillus cereus Rock4-18]
Length = 229
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L + ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEISDFQVDVEHSGEIGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|224372441|ref|YP_002606813.1| DNA-binding response regulator [Nautilia profundicola AmH]
gi|223589062|gb|ACM92798.1| DNA-binding response regulator [Nautilia profundicola AmH]
Length = 219
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD + + + L G+E VS +G SA + EE F ++L D+ +P M+
Sbjct: 1 MKRKILIVEDDVSLNETVKEFLELNGFESVSVYDGDSALSRAYEESFDIILLDVKLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++A+ + D ++FIT + + KPF L++L ++ +L
Sbjct: 61 GFDVAKEIRK-FSDTPIIFITSLDSEKDIEKGFLSGGDDYIRKPFSLKELKLRIDAILRR 119
>gi|254501265|ref|ZP_05113416.1| phosphate regulon transcriptional regulatory protein PhoB
[Labrenzia alexandrii DFL-11]
gi|222437336|gb|EEE44015.1| phosphate regulon transcriptional regulatory protein PhoB
[Labrenzia alexandrii DFL-11]
Length = 236
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ + L L GY V +C G A ++RE LLL D ++P + GIE
Sbjct: 8 KVLIVEDEEPLSLLLRYNLEAEGYAVETCVRGDEAEIRLRETQPDLLLLDWMLPGLSGIE 67
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A + + KPF + +L+ V +L
Sbjct: 68 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRR 126
>gi|307155194|ref|YP_003890578.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
gi|306985422|gb|ADN17303.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
Length = 358
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ D + AL + GY+V +G +A +++ P L+L D++MP +DG E+
Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYKVHLVEDGLTALAQIQYSPPDLILLDVMMPGIDGFEV 71
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + P + ++ IT + + + KP + +L V LL +K
Sbjct: 72 TRRIRQNPNIPFIPILLITAY-EEPSLIQGLDVGADEFIRKPIQIDELQARVRSLLRLK 129
>gi|189462622|ref|ZP_03011407.1| hypothetical protein BACCOP_03314 [Bacteroides coprocola DSM 17136]
gi|189430783|gb|EDU99767.1| hypothetical protein BACCOP_03314 [Bacteroides coprocola DSM 17136]
Length = 242
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + + + + L + D++MP+
Sbjct: 11 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELFPDGEAGFKAFLKNKYDLCVLDVMMPK 70
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 71 KDGFTLAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 130
Query: 119 TI 120
Sbjct: 131 RR 132
>gi|217976613|ref|YP_002360760.1| response regulator receiver modulated diguanylate cyclase
[Methylocella silvestris BL2]
gi|217501989|gb|ACK49398.1| response regulator receiver modulated diguanylate cyclase
[Methylocella silvestris BL2]
Length = 469
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + L L YEVV+ +NGA A ++L D++MP M+
Sbjct: 1 MTARVLVVDDNLPNVKLLEARLSAEYYEVVTASNGADALAICARGECDIVLLDVMMPGMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR L + V+ +T + L+KP L+ V L
Sbjct: 61 GFEVCRRLKADTLTAHIPVVMVTALDQTSDRLMGLEAGADDFLTKPIDDVALIARVRSLA 120
Query: 119 TIK 121
++
Sbjct: 121 RLR 123
Score = 80.9 bits (200), Expect = 5e-14, Method: Composition-based stats.
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 9/123 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D + AL +EV + A + + LL+ + + DG+
Sbjct: 157 RVLVVDDRRSSVETIYGALKGL-HEVELEPDALEALVEGAAGGYDLLIVSLSLEAYDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPD---SNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + E +L ++ I A L +P +LV V L
Sbjct: 216 LCSQIRSIEATRELPILAI---AEPEDRARTLRCLDLGVNDYLLRPIERHELVARVRTQL 272
Query: 119 TIK 121
K
Sbjct: 273 RRK 275
>gi|110798695|ref|YP_695502.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|168211129|ref|ZP_02636754.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
gi|110673342|gb|ABG82329.1| DNA-binding response regulator [Clostridium perfringens ATCC 13124]
gi|170710848|gb|EDT23030.1| DNA-binding response regulator [Clostridium perfringens B str. ATCC
3626]
Length = 226
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E
Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEVDLIILDVMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ ++ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|21223649|ref|NP_629428.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|256785237|ref|ZP_05523668.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289769129|ref|ZP_06528507.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|9909919|emb|CAC04498.1| putative two-component system response regulator [Streptomyces
coelicolor A3(2)]
gi|289699328|gb|EFD66757.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 244
Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ DI++P DG+
Sbjct: 18 RRVLVVEDDQTIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 77
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 78 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 134
>gi|322387045|ref|ZP_08060657.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
gi|321142129|gb|EFX37622.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779]
Length = 134
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ D+ + L +AGY+V+ ++G + R++ L++TDI+MP MD
Sbjct: 1 MKKTILLVDDEIDILDIQNRYLLQAGYDVLVAHDGKEGLELFRKKSIDLIITDIMMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + PD +F T + + ++KPF R+LV VN ++
Sbjct: 61 GYDFISEVQYIAPDQPFLFTTAKTSEQDKIYGLSLGADDFIAKPFSPRELVLRVNNIMRR 120
>gi|294810056|ref|ZP_06768728.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|294442749|gb|EFG11544.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|295085462|emb|CBK66985.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1307
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +AL + V+ NG A + + + ++++D++MPEMDG+E
Sbjct: 1061 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1119
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ +T + + L KPF ++ L ++ LL ++
Sbjct: 1120 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKLR 1179
>gi|237717363|ref|ZP_04547844.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262406129|ref|ZP_06082679.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294644026|ref|ZP_06721803.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|229443346|gb|EEO49137.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262357004|gb|EEZ06094.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|292640550|gb|EFF58791.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
Length = 1326
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +AL + V+ NG A + + + ++++D++MPEMDG+E
Sbjct: 1080 TVLLVEDNLELLNLTREALSTW-FRVIRAGNGKEALEILTRQSVDVIVSDVMMPEMDGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ +T + + L KPF ++ L ++ LL ++
Sbjct: 1139 LCNHVKSDMAYSHIPVILLTAKTTLESKVEGLESGADVYLEKPFSVKQLYKQIENLLKLR 1198
>gi|161503820|ref|YP_001570932.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865167|gb|ABX21790.1| hypothetical protein SARI_01907 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 226
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALREHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+++T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAH-QTPVIYLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|254361254|ref|ZP_04977397.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
PHL213]
gi|153092750|gb|EDN73793.1| phosphate regulon response regulator PhoB [Mannheimia haemolytica
PHL213]
Length = 228
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+ +R L L K Y+V+ + SA +K+ E L+L D +MP
Sbjct: 1 MNNKILIVEDERAIREMLSLYLSKQ-YQVIEAEDYQSAINKLGE-KPELILLDWMMPGRS 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI L + + + ++ +T ++ ++KPF + L+ + +
Sbjct: 59 GIHLIKYLKKQPETEKIPIIMLTARSSEEDCITGLNAGADDYITKPFSPQVLLARIEAVW 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|78213886|ref|YP_382665.1| two component transcriptional regulator [Synechococcus sp. CC9605]
gi|78198345|gb|ABB36110.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9605]
Length = 262
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R D + ++ +T L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQARVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|253571534|ref|ZP_04848940.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 1_1_6]
gi|251838742|gb|EES66827.1| two-component system sensor histidine kinase/response [Bacteroides
sp. 1_1_6]
Length = 1353
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++++RR+L L + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1104 TILIVEDNNEIRRYLNNGLADL-FNTLEAGNGEEALEKLKDNEVDVIVTDVMMPVMDGIK 1162
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ ++ + + + KPF L L ++ ++ +
Sbjct: 1163 LCKNVKQNIRTCHIPVIILSAKTDIKDQMEGLQMGADDYIPKPFSLAILTTKIQNMMRTR 1222
>gi|237746571|ref|ZP_04577051.1| response regulator [Oxalobacter formigenes HOxBLS]
gi|229377922|gb|EEO28013.1| response regulator [Oxalobacter formigenes HOxBLS]
Length = 233
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + ++ AG+ V+ +G A+ ++ ++L D ++P++ G+ L
Sbjct: 8 ILVVEDEPAIAELVAFSVKSAGWMPVTVYSGTEAWTALQRFRPDVVLLDWMLPDLSGMRL 67
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E L V+ +T ++KPF ++LV +N LL K
Sbjct: 68 LSRIREHREMKTLPVIMLTAKTLEEDKVAGLDQGADDYITKPFSPKELVARINALLRRK 126
>gi|256393335|ref|YP_003114899.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256359561|gb|ACU73058.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 241
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ EDD + +L GY ++ SA+ V + P L++ D+++P D
Sbjct: 1 MSAYILIVEDDPKQAELIRVSLQSEGYRTAIAHDAPSAFRSVEDCPPDLVVLDLMLPGAD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + V+ +T + ++KP+ R+LV + +L
Sbjct: 61 GLTICRWLRRRG-ETPVLMVTARSTEDDVLAGLDVGADDYMTKPYSPRELVARIRTVLRR 119
>gi|298528058|ref|ZP_07015462.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511710|gb|EFI35612.1| response regulator receiver protein [Desulfonatronospira
thiodismutans ASO3-1]
Length = 378
Score = 144 bits (364), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D RR L L KAGY + +G A + RE L+L D++MP DG +
Sbjct: 12 ILIVDDSPLNRRMLRVVLNKAGYRIQEAEDGLQAREMAREHLPDLILLDVMMPHEDGFDT 71
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D+ ++FI+ +SKPF +++ + L +K
Sbjct: 72 CIKLKKQSSTQDIPIIFISALNDTENIVKGLELGGVDYISKPFAQTEVMARIRVHLELK 130
>gi|291437627|ref|ZP_06577017.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
14672]
gi|291340522|gb|EFE67478.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
14672]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|302558802|ref|ZP_07311144.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
Tu4000]
gi|302476420|gb|EFL39513.1| DNA-binding response regulator MtrA [Streptomyces griseoflavus
Tu4000]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 11 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 70
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 71 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124
>gi|302558457|ref|ZP_07310799.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
Tu4000]
gi|302476075|gb|EFL39168.1| transcriptional regulatory protein CseB [Streptomyces griseoflavus
Tu4000]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ DI++P DG+
Sbjct: 20 RRVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDIMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P L V+ +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQAQRP-LPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|209518114|ref|ZP_03266943.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209501418|gb|EEA01445.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +DD +R L L K G V NG + L++ D+++P DG
Sbjct: 4 SDHVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRAALENGAPDLIVLDLMLPGEDG 63
Query: 62 IELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + ++ +T A L+KPF R+L+ + +L
Sbjct: 64 LVLCRELRAGKFRTVPILMLTARNEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRR 123
>gi|260173192|ref|ZP_05759604.1| histidine kinase [Bacteroides sp. D2]
gi|315921466|ref|ZP_07917706.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695341|gb|EFS32176.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1376
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
ILL +D+ ++ L + K Y ++ +G A DK ++++D++MP M+G
Sbjct: 1131 KPTILLVDDNHEILMILREYFVKE-YNIIMAIDGQEALDKCNRSLPDMIISDVMMPRMNG 1189
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL + + ++ +T + + + + KPF+ R L V LL
Sbjct: 1190 IELCATLKKNLQTCFIPIILLTAKSQIEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLN 1249
Query: 120 IKN 122
+
Sbjct: 1250 KSH 1252
>gi|322418221|ref|YP_004197444.1| Fis family two component sigma54 specific transcriptional regulator
[Geobacter sp. M18]
gi|320124608|gb|ADW12168.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 453
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GY+V + +GA+ E L++TD+ MP M
Sbjct: 1 MPPKILIIDDDSSLRRVLEYNLQQEGYDVYTAADGAAGLQLFEERSPQLVITDLKMPGMT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
G E+ E P V+ +T F A+ ++ L+KPF+ +L V
Sbjct: 61 GFEVLSTVKERAPSTVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTV 114
>gi|120600124|ref|YP_964698.1| two component transcriptional regulator [Shewanella sp. W3-18-1]
gi|146291948|ref|YP_001182372.1| two component transcriptional regulator [Shewanella putrefaciens
CN-32]
gi|120560217|gb|ABM26144.1| two component transcriptional regulator, winged helix family
[Shewanella sp. W3-18-1]
gi|145563638|gb|ABP74573.1| two component transcriptional regulator, winged helix family
[Shewanella putrefaciens CN-32]
gi|319425239|gb|ADV53313.1| two component transcriptional regulator, winged helix family
[Shewanella putrefaciens 200]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ + IL+ EDD + ++ L GYEV + G A + + +E L+L D++MP
Sbjct: 1 MSVAKHILVVEDDTSLAEWISDYLLDHGYEVTVASQGDFALEMIADETPDLVLLDVMMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G ++ + A ++F+T L+KP + L+ + LL
Sbjct: 61 KNGFDVCKEARAFYAG-PILFMTACVEDGDEIRGLDAGADDYLTKPIRPQVLLARIKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|303240383|ref|ZP_07326901.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302592110|gb|EFL61840.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 239
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++A+D+D + L + K G+ + +G SA + E L+L D++MP+ DG E+
Sbjct: 1 MIADDNDGIVDILKTYVSKEGFTPIIAYDGESAVNMFNEYSPLLILLDVMMPKKDGFEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +T A + KPF +++ + +L
Sbjct: 61 QEIRK-TSNVPIIMVTAKGEDADRIMGLDIGADDYIVKPFSPGEVMARIRAVLRR 114
>gi|257783900|ref|YP_003179117.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
gi|257472407|gb|ACV50526.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + + L GY V +NG A + + E + L+L D+ +P +DG++
Sbjct: 2 KILVVEDEKELLASIGEGLELDGYYVDLVDNGTQALEMAQLEQYDLILLDLNLPGIDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + KV+ ++ ++V+ L KPF +L + LL +
Sbjct: 62 LLRTLRSEHSETKVLILSARSSVSDRIVGLDAGADDYLIKPFAFGELEARIRTLLRRE 119
>gi|300775304|ref|ZP_07085166.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
gi|300506044|gb|EFK37180.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910]
Length = 223
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +++ + L + V N ++ +K+ + +L DI++P+ +GI+
Sbjct: 2 KILIIEDEPELKDTVQNFLEAEHFIVEYAENYSAGLEKIISYEYDCILLDIMLPDGNGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ V+ ++ +V L+KPFHL +L+ + ++ KN
Sbjct: 62 LLKEIKKMHKKDPVIILSAKDSVDDKVAGLEIGADDYLAKPFHLAELLARIKSVIRRKN 120
>gi|218905898|ref|YP_002453732.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228929721|ref|ZP_04092738.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|218536884|gb|ACK89282.1| DNA-binding response regulator [Bacillus cereus AH820]
gi|228829900|gb|EEM75520.1| hypothetical protein bthur0010_44050 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|329923332|ref|ZP_08278816.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
gi|328941424|gb|EGG37716.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
Length = 228
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + L L + V + + A+ ++ ++ DI+MP +G E
Sbjct: 6 TILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHAIHCMVLDIMMPGQNGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + ++F++ + + K ++V V +L
Sbjct: 66 LCRRIRAE-SHVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRR 121
>gi|325298638|ref|YP_004258555.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324318191|gb|ADY36082.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1353
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ ++ ++ YEV + NG + E ++++DI+MP MDGI L
Sbjct: 1092 ILIVEDNKDILDYIAESFTDL-YEVKTALNGKEGMEIALECIPDIIVSDIMMPVMDGITL 1150
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL--TI 120
++ + ++ +T ++ + L+KPF L + +N LL
Sbjct: 1151 CKQLKNDIRTSHIPIILLTAKDTLSDKEEGYQSGADSYLTKPFSASLLHSRINNLLAQRR 1210
Query: 121 K 121
+
Sbjct: 1211 R 1211
>gi|313124174|ref|YP_004034433.1| DNA-binding response regulator, ompr family (rec-whth domains)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280737|gb|ADQ61456.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|325685788|gb|EGD27861.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 237
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E
Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T +V + KPF + +L+ + +L
Sbjct: 63 IARRVRQ-SKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|270291713|ref|ZP_06197929.1| DNA-binding response regulator DltR [Streptococcus sp. M143]
gi|270279798|gb|EFA25639.1| DNA-binding response regulator DltR [Streptococcus sp. M143]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R + AL + GY V S NG A K + L++ DI+MP GIE
Sbjct: 2 KILLAEDETQLNRVITVALEREGYTVDSVFNGQDAVKKATTNHYHLMIFDIMMPIKTGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L V+ +T A V L+KPF L++L+ +
Sbjct: 62 ALKEIRQLGNTTHVIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRSTARR 118
>gi|302553755|ref|ZP_07306097.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302471373|gb|EFL34466.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|170760407|ref|YP_001785600.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
gi|169407396|gb|ACA55807.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V NG A + + +E L++ DI+MP +DG+++
Sbjct: 4 VLIVDDEVEIIELMEVYLLNDGYKVFKATNGLDALNIINKEKIHLVILDIMMPGIDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ ++ + + KPF +L+ V +
Sbjct: 64 CMKIRKEY-NIPIIMVSAKGQEMDKIQGLSTGADDYIVKPFSTMELLARVKAQIRR 118
>gi|114321652|ref|YP_743335.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
MLHE-1]
gi|114228046|gb|ABI57845.1| two component transcriptional regulator, winged helix family
[Alkalilimnicola ehrlichii MLHE-1]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +RR L ALG+AGY V +G R+ P L + D+ +P G+E
Sbjct: 2 RLLVVEDEPALRRQLADALGRAGYVVDQAADGREGLHMARDYPLDLAIIDLGLPRFSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ +T L KPF + +L+ V LL
Sbjct: 62 LIRALRADGRTLPVLVLTARGHWQDRVTGLEAGADDYLVKPFEMPELLARVQALLRR 118
>gi|325282397|ref|YP_004254938.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
gi|324314206|gb|ADY25321.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
Length = 222
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+ ED+ D+ R + L +AGYE ++ +G S REE L++ D+ +P++D
Sbjct: 1 MEQRILVIEDNPDISRVVQYELEQAGYEALTAPDGISGLTLAREEHPDLVILDLGLPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + + ++ +T A+ ++KPF+ +LV V L
Sbjct: 61 GAEVTRRLRK-NSSMPIIILTAMDALDRKVALLEAGADDYMTKPFYPEELVARVKVQLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|298682184|gb|ADI95252.1| winged helix family two compontent transcriptional regulator
[Pseudomonas putida]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|295704273|ref|YP_003597348.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294801932|gb|ADF38998.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ +R + L G+E + +N + E+ L++ DI+MP+M+
Sbjct: 1 MKDRILIIDDDEQIRNLIAIYLENEGFEALKVSNAVCGLALLEEQEVDLIILDIMMPQMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ A + E ++ ++ ++ + L+KPF+ +L+ V +
Sbjct: 61 GIDAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRR 119
>gi|291519285|emb|CBK74506.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+A+D+ MR+ + L + YEVV NG A D + SL++ D++MP+
Sbjct: 1 MSKNKILVADDESRMRKLIRDYLVREDYEVVEAENGEQALDMFYMDSEISLIILDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + + E + V+ +T + + ++KPF + L+ VN +L
Sbjct: 61 VDGFAVLKEIRE-TSSIPVLMLTAKGEENDVLNGFELGADEYINKPFSPKILMARVNAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|254883001|ref|ZP_05255711.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|319641845|ref|ZP_07996522.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_40A]
gi|254835794|gb|EET16103.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317386518|gb|EFV67420.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_40A]
Length = 1319
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ D+ +L L Y++ +NG A D + E L+++D++MP MDG+E
Sbjct: 1069 HILVVDDNQDLLNYLRMLLAPR-YQITCASNGKEALDLLSELMPDLVISDVMMPVMDGME 1127
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + L V+ +T + ++KPF + +++ LL+ +
Sbjct: 1128 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1187
>gi|221066120|ref|ZP_03542225.1| two component transcriptional regulator PhoB, winged helix family
[Comamonas testosteroni KF-1]
gi|264679333|ref|YP_003279240.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|299532292|ref|ZP_07045685.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
gi|220711143|gb|EED66511.1| two component transcriptional regulator PhoB, winged helix family
[Comamonas testosteroni KF-1]
gi|262209846|gb|ACY33944.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|298719700|gb|EFI60664.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L G++ V +G SA ++ ++L D ++P G+ L
Sbjct: 7 VLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVSAQRELDAVLPDVILLDWMLPGASGLSL 66
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
AR+ + ++ +T ++KPF ++L+ + +L +
Sbjct: 67 ARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125
>gi|86749533|ref|YP_486029.1| response regulator PleD [Rhodopseudomonas palustris HaA2]
gi|86572561|gb|ABD07118.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris HaA2]
Length = 457
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++VV+ NGA A + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANVKLLEARLSAEYFDVVTAANGAQALEICDRAECDIVLLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 68.6 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L +++ N + A E + LL+ + + DG+
Sbjct: 157 RILLVDDRPSSYERLAPLLAAE-HDIDVEPNPSEALFHAAEGNYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAIADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|260905794|ref|ZP_05914116.1| two component transcriptional regulator [Brevibacterium linens BL2]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL ED+D L LGK GYEV ++G A + L+L D+++P +
Sbjct: 1 MT-RILLVEDEDSFSDPLSYLLGKEGYEVTVADDGLKALAEFDRNGADLVLLDLMLPGVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + + ++ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTEVCRELR-VKSSVPIIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARVRAVLRR 118
>gi|23336525|ref|ZP_00121738.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Bifidobacterium longum DJO10A]
gi|23465569|ref|NP_696172.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
gi|189439616|ref|YP_001954697.1| putative response regulator [Bifidobacterium longum DJO10A]
gi|227546166|ref|ZP_03976215.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239621792|ref|ZP_04664823.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|296453867|ref|YP_003661010.1| winged helix family two component transcriptional regulator
[Bifidobacterium longum subsp. longum JDM301]
gi|312133015|ref|YP_004000354.1| response regulator [Bifidobacterium longum subsp. longum BBMN68]
gi|317481881|ref|ZP_07940908.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|322688823|ref|YP_004208557.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
gi|322690811|ref|YP_004220381.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|23326235|gb|AAN24808.1| response regulator of two-component system [Bifidobacterium longum
NCC2705]
gi|189428051|gb|ACD98199.1| Putative response regulator [Bifidobacterium longum DJO10A]
gi|227213147|gb|EEI81019.1| response regulator [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|239514983|gb|EEQ54850.1| response regulator [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291517115|emb|CBK70731.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Bifidobacterium longum
subsp. longum F8]
gi|296183298|gb|ADH00180.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. longum JDM301]
gi|311774002|gb|ADQ03490.1| Putative response regulator [Bifidobacterium longum subsp. longum
BBMN68]
gi|316916672|gb|EFV38067.1| response regulator receiver domain-containing protein
[Bifidobacterium sp. 12_1_47BFAA]
gi|320455667|dbj|BAJ66289.1| two-component response regulator [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320460159|dbj|BAJ70779.1| two-component response regulator [Bifidobacterium longum subsp.
infantis 157F]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ +GASA + L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAASQLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|332715895|ref|YP_004443361.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
gi|325062580|gb|ADY66270.1| two component transcriptional regulator [Agrobacterium sp. H13-3]
Length = 243
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L K LG G+ V + ++ L++ D+++P+ G++
Sbjct: 8 HILIVDDDPEIRTLLAKYLGSQGFRVSMAADRREFEEQFACSDPDLIVLDVMLPDGSGLD 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P V+ +T L KPF+ R+L + +L
Sbjct: 68 ICRDLQGRRPRTPVILLTALKEDVDRIVGLEIGADDYLGKPFNPRELTARIKAVLRR 124
>gi|319936032|ref|ZP_08010455.1| vanr protein [Coprobacillus sp. 29_1]
gi|319808982|gb|EFW05489.1| vanr protein [Coprobacillus sp. 29_1]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ + L G+EV G A V + L + DI++P++ G+E
Sbjct: 2 KVLVVDDEKEIADLVELYLKNDGFEVYKFYTGNEALQCVDVQDIDLAILDIMLPDISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + ++ +T ++KPF +L+ V L
Sbjct: 62 ICQTIRENY-NFPIIMLTAKETEIDKITGLTIGADDYVTKPFRPLELMARVKAQLRR 117
>gi|317483795|ref|ZP_07942735.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316924898|gb|EFV46044.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 236
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD D+R L L + V + +GA ++K+ F L++ DI++P DG+
Sbjct: 6 RLLVVDDDADIRELLSAYLARYDMTVETAADGAGLFEKLDHAHFDLIILDIMLPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+F+T + + KPF R+L+ + +L
Sbjct: 66 LCRRLRG-TSAIPVIFLTSLDSSTDRVVGLELGADDYVVKPFDPRELLARIRTVLRR 121
>gi|315445373|ref|YP_004078252.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
gi|315263676|gb|ADU00418.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium sp. Spyr1]
Length = 1386
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L GY V + +G A + +R EP L+++D++MP +DG+
Sbjct: 630 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGRQALEAIRAEPPDLVISDVMMPRLDGLG 689
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + V+ ++ A + L KPF +L+ V
Sbjct: 690 LVSELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 744
>gi|295696488|ref|YP_003589726.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
gi|295412090|gb|ADG06582.1| response regulator receiver protein [Bacillus tusciae DSM 2912]
Length = 168
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN QK+L+ +DD+++R + L GY S NG A + + E LL+ D+++P+
Sbjct: 1 MNEEQKVLVVDDDEELRELVELYLRSHGYRTASAENGRRALELLCREQPDLLILDVLLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+EL R D+ V+F++ L+KPF LV V L
Sbjct: 61 VNGVELCRMIR-RSSDVPVLFLSWKGTPGDIVAGLEEGGDDYLTKPFDPMVLVARVKARL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|160883867|ref|ZP_02064870.1| hypothetical protein BACOVA_01840 [Bacteroides ovatus ATCC 8483]
gi|156110597|gb|EDO12342.1| hypothetical protein BACOVA_01840 [Bacteroides ovatus ATCC 8483]
Length = 1338
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ D+ ++L + V+ +NG A + + +E ++++D++MPEMDG+E
Sbjct: 1082 TVLLVEDNVDLLNLTRESLAAW-FRVLRASNGREALEVLAKENVDVIVSDVMMPEMDGLE 1140
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1141 LCSKVKSEISYSHIPVILLTAKTTLESKVEGLECGADVYVEKPFSVKQLHMQIENLLKLR 1200
>gi|312868964|ref|ZP_07729144.1| response regulator receiver domain protein [Lactobacillus oris
PB013-T2-3]
gi|311095528|gb|EFQ53792.1| response regulator receiver domain protein [Lactobacillus oris
PB013-T2-3]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE +S +G A K+ P +L++ D++MPEMDG+
Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPLSAYDGKEALTKLNTNPDINLVILDLMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D D+ ++ ++ A ++KPF+ +++ V LL
Sbjct: 62 EVIKQVRK-DSDIPILVLSAKTADMDKIQGLISGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|219854217|ref|YP_002471339.1| hypothetical protein CKR_0874 [Clostridium kluyveri NBRC 12016]
gi|219567941|dbj|BAH05925.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 235
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN +IL+ EDD+++ + L + Y ++ NG A +K + F L++ D+++P +
Sbjct: 6 MNVPRILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYI 65
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ R+ E + ++ ++ + KPF +R+L V L
Sbjct: 66 DGIEVLRKIRE-SSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|182413097|ref|YP_001818163.1| two component, sigma54 specific, Fis family transcriptional
regulator [Opitutus terrae PB90-1]
gi|177840311|gb|ACB74563.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Opitutus terrae PB90-1]
Length = 452
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 67/120 (55%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D+ + + +AL + G++V + N+GASA + ++ ++L++TDI MPE+DG
Sbjct: 5 KARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIRMPELDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L + A D + + +T F V ++ L+KP L+ L V + L ++
Sbjct: 65 MQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPVDLKRLRAVVAKALELQ 124
>gi|162147183|ref|YP_001601644.1| regulatory protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209544237|ref|YP_002276466.1| winged helix family two component transcriptional regulator
[Gluconacetobacter diazotrophicus PAl 5]
gi|161785760|emb|CAP55331.1| putative regulatory protein [Gluconacetobacter diazotrophicus PAl
5]
gi|209531914|gb|ACI51851.1| two component transcriptional regulator, winged helix family
[Gluconacetobacter diazotrophicus PAl 5]
Length = 263
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 9/126 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD MR L++ L GY V +G + + P L++ D+++P +G++
Sbjct: 20 RILVVEDDPGMRTLLVRVLQGDGYRVRGVQDGREMWSALATSPADLIVLDVMLPGTNGLD 79
Query: 64 LARRATEL---------DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L R DP + V+ ++ ++KPF ++L+ V
Sbjct: 80 LCRSLRRGGVPVDGVVPDPQIPVIMVSARGEELDRVVGLELGADDYVAKPFGQKELLARV 139
Query: 115 NRLLTI 120
+L
Sbjct: 140 RAVLRR 145
>gi|281356725|ref|ZP_06243216.1| two component transcriptional regulator, winged helix family
[Victivallis vadensis ATCC BAA-548]
gi|281316852|gb|EFB00875.1| two component transcriptional regulator, winged helix family
[Victivallis vadensis ATCC BAA-548]
Length = 230
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD F++K L ++GY V +G K E L + DI++P +DG
Sbjct: 2 KILLVEDDARTADFILKGLQQSGYTTVHAADGRDGLFKATTESCDLAVVDIMLPGLDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + L V+ ++ ++V + L KPF +L+ + LL
Sbjct: 62 LIEKLRAAGIKLPVIVLSARSSVDDKIRALQTGGDDYLVKPFSFSELIARIQALLRR 118
>gi|153953595|ref|YP_001394360.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146346476|gb|EDK33012.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 230
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN +IL+ EDD+++ + L + Y ++ NG A +K + F L++ D+++P +
Sbjct: 1 MNVPRILIVEDDEEINNLIYNTLKREKYNMIQAFNGEDAINKYHSDNFQLVILDLMLPYI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ R+ E + ++ ++ + KPF +R+L V L
Sbjct: 61 DGIEVLRKIRE-SSTVPIIILSAKDQETDRIIGLGMGADDYIVKPFSIRELTARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|116491734|ref|YP_811278.1| DNA-binding response regulator [Oenococcus oeni PSU-1]
gi|116092459|gb|ABJ57613.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Oenococcus oeni PSU-1]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD++ + + L G+EV+SC + AYD + F L++TD++MP +DG+E
Sbjct: 3 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A+ +L+ ++ ++F+T + L KP L +L ++ +L N
Sbjct: 63 FAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPIDLDELKLRISAVLRRAN 121
>gi|160881553|ref|YP_001560521.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160430219|gb|ABX43782.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 233
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+A+D+ D+ L K V +G A R+ +++L D++MP+ DG
Sbjct: 2 QHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ D+ V+ IT + KPF +++ + +L
Sbjct: 62 EVCRKIRAK-SDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR 118
>gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus
sp. CC9902]
gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus
sp. CC9902]
Length = 245
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G++V + +G + K ++ ++++D++MP +DG
Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVTTAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E V+F+T A + KPF +LV V + +
Sbjct: 80 LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQRQ 139
>gi|113476774|ref|YP_722835.1| response regulator receiver protein [Trichodesmium erythraeum
IMS101]
gi|110167822|gb|ABG52362.1| response regulator receiver protein [Trichodesmium erythraeum
IMS101]
Length = 121
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED R + + L +G V N+G A +++ +++ DIVMP+M+
Sbjct: 1 MS-KVLVVEDSVTQREMISQLLKNSGLAVTVANDGVEALGRLKNTKPDIVVLDIVMPKMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ + ++KPF +LV V +LL
Sbjct: 60 GYEVCRRIKSDPQTKHIPVVMCSSKGEEFDRYWGLKQGADAYIAKPFQPTELVGTVKQLL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|319652578|ref|ZP_08006692.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
gi|317395652|gb|EFV76376.1| response regulator receiver [Bacillus sp. 2_A_57_CT2]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL EDD ++ + + L + ++V++ +G A ++E F L+L D+++P+
Sbjct: 1 MQKRILLVEDDREINKLIKDHLEQENFKVLTAFDGEEALSLFKKEEFDLILLDLMLPKFS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ E L V+ I+ + +SKP + +L V+ +
Sbjct: 61 GMDILKKVREK-SLLPVLIISAKGSDLDKALGLGFGADDYISKPISMIELTARVHAAIRR 119
>gi|301061357|ref|ZP_07202137.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300444534|gb|EFK08519.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 492
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ +D+ +R + L GYE+ + NG+ A + + E +LL D+ MP
Sbjct: 1 MAKKTHVLVVDDEKVVRDGCRRVLSGRGYEITTAENGSQALEILGAEHIDILLLDLKMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M G E+ R + PD+ V+ ITG V + ++KPF + + + R
Sbjct: 61 MSGEEVLERTRDTHPDIPVIVITGHGTVDTAVECMKKGAYDFITKPFQIDQFLLTIERAA 120
Query: 119 TIKN 122
++
Sbjct: 121 DKRH 124
>gi|296450961|ref|ZP_06892708.1| response regulator [Clostridium difficile NAP08]
gi|296879073|ref|ZP_06903069.1| response regulator [Clostridium difficile NAP07]
gi|296260179|gb|EFH07027.1| response regulator [Clostridium difficile NAP08]
gi|296429946|gb|EFH15797.1| response regulator [Clostridium difficile NAP07]
Length = 244
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++
Sbjct: 13 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 72
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ L+
Sbjct: 73 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|283798726|ref|ZP_06347879.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
gi|291073407|gb|EFE10771.1| DNA-binding response regulator DltR [Clostridium sp. M62/1]
gi|295090823|emb|CBK76930.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
gi|295116054|emb|CBL36901.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SM4/1]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 59/114 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L + Y V S +G +A + + + + ++ DI+MP++DGI
Sbjct: 2 RLLLAEDEAALSKALTAILERNNYSVDSVCDGQAALEYLESDNYDGVILDIMMPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ R+ + + V+ +T + V L+KPFH R+L+ + +
Sbjct: 62 VLRKLRQKGSLVPVLLLTAKSEVDDKVLGLDAGANDYLTKPFHSRELLARIRAM 115
>gi|229128485|ref|ZP_04257464.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
gi|228654988|gb|EEL10847.1| Two-component response regulator [Bacillus cereus BDRD-Cer4]
Length = 236
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +D
Sbjct: 11 MLMRVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + +R + V+ +T + L KPF +L+ + L+
Sbjct: 71 GLHVLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 130
>gi|291287384|ref|YP_003504200.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
gi|290884544|gb|ADD68244.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
Length = 234
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD + + L + L Y V NN ++ S+++ DI+MP ++
Sbjct: 1 MSHNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L ++ + + D+ V+ ++ V L+KPF R+L+ + ++
Sbjct: 61 GFDLCKKLRK-NSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKR 119
>gi|209966094|ref|YP_002299009.1| transcriptional regulatory protein ChvI [Rhodospirillum centenum
SW]
gi|209959560|gb|ACJ00197.1| transcriptional regulatory protein ChvI [Rhodospirillum centenum
SW]
Length = 232
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q I L +DD ++ + AL G+EV + +G A + P L + DI MP MD
Sbjct: 1 MAQTIALVDDDRNILTSVSIALEAEGFEVRTYGDGDEALRGLTSRPVDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF R L+ + LL
Sbjct: 61 GMELLQRLRQ-TSAVPVIFLTSKDDEIDELQGLRMGADDYIRKPFSQRLLIERIRALLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|158424377|ref|YP_001525669.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
gi|158331266|dbj|BAF88751.1| IMP dehydrogenase [Azorhizobium caulinodans ORS 571]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD ++R+ L + L G+ +G + + F +++ D+++P+ G++
Sbjct: 6 HVLVVDDDQEIRKLLARYLLSQGFRTTVAASGREMEECLASSRFDMVVLDLMLPDASGLD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L ++ +T L KPF+ R+LV + +L
Sbjct: 66 LCRALRAR-SRLPIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRR 121
>gi|125973909|ref|YP_001037819.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|125714134|gb|ABN52626.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
Length = 236
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K I + ED+ ++ L L + GYEV +G + ++ V + L + DI++P +
Sbjct: 1 MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ ++ E + ++ +T +SKPF +R+ V V
Sbjct: 61 DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 120
Query: 118 LTIK 121
+
Sbjct: 121 FRRQ 124
>gi|118443185|ref|YP_877407.1| two-component response regulator [Clostridium novyi NT]
gi|118133641|gb|ABK60685.1| two-component response regulator [Clostridium novyi NT]
Length = 234
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ EDD ++ + L + Y V + G + +++ + L++ DI++PE+D
Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + L ++ ++ ++ ++KPF L +L V +
Sbjct: 61 GFTVCKNIR-LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKR 119
>gi|110597377|ref|ZP_01385664.1| Response regulator receiver:Sigma-54 factor, interaction
region:Helix-turn-helix, Fis-type [Chlorobium
ferrooxidans DSM 13031]
gi|110340921|gb|EAT59392.1| Response regulator receiver:Sigma-54 factor, interaction
region:Helix-turn-helix, Fis-type [Chlorobium
ferrooxidans DSM 13031]
Length = 451
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 59/118 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GYEV + +G ++ L++TD+ M MD
Sbjct: 1 MKAKILVIDDDTSLRRVLEYNLQEEGYEVETAASGEEGLMRLDLFGPDLVITDMKMTGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ + E P+ V+ IT F +V ++ ++KPF+ L V + L
Sbjct: 61 GMKVLKSVRERSPETLVIIITAFGSVDAAVEAMKAGAYDYITKPFNRDSLRLTVKKAL 118
>gi|332711421|ref|ZP_08431353.1| PAS domain S-box protein [Lyngbya majuscula 3L]
gi|332349970|gb|EGJ29578.1| PAS domain S-box protein [Lyngbya majuscula 3L]
Length = 516
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D + + L +G++V+ +G SA KV L+L DI+MP +DG E
Sbjct: 33 IVIVDDSPTNLGVMFELLSNSGFKVLVAQDGYSALQKVNYTQPDLILLDIMMPGIDGFET 92
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + D+ V+F+T L+KP ++ VN L +
Sbjct: 93 CRRLKAQESTRDIPVIFLTARTDTLDKVKGFKLGAVDYLTKPVQQEEVRARVNTHLKL 150
>gi|293607199|ref|ZP_06689540.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
43553]
gi|292814291|gb|EFF73431.1| transcriptional regulator FeuP [Achromobacter piechaudii ATCC
43553]
Length = 219
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L AL AGY V +G SA E F ++ D+ +P MDG+
Sbjct: 2 RILVVEDEPTLAAQLADALRGAGYTVDVAGDGESARFLGDVETFDAVVLDLGLPVMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ +T L+KPFH+ +L+ V LL
Sbjct: 62 VLKLWRAAQRNMPVLILTARDNWHEKVAGIDAGADDYLTKPFHMEELLARVRALLRR 118
>gi|291566616|dbj|BAI88888.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 774
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD + + L K+L Y V +G S ++ + +SL++ DI++P+++GI
Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + V+ +T + L KP +L+ + LL
Sbjct: 62 LCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRR 118
Score = 96.7 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+ DD + L L G EV + N + + LL+ D+ MP +GI+
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L + L ++ +T + +SKP +L+ +
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARL 599
Score = 60.1 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP--EMDGIE 63
L+ + D + +I+ G E A + E S++L ++ P E DG+
Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L P++ V+ + ++ + L KP ++ V +L N
Sbjct: 425 LLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGILNHHN 483
>gi|291278719|ref|YP_003495554.1| two-component system, OmpR family, response regulator
[Deferribacter desulfuricans SSM1]
gi|290753421|dbj|BAI79798.1| two-component system, OmpR family, response regulator
[Deferribacter desulfuricans SSM1]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKI + EDD + + L G EV NG A D V E L++ D+++P++ G
Sbjct: 3 KQKIFIIEDDKKIANIVSSYLKHEGVEVFHFINGKEALDAVIELNPDLIILDLMLPDISG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + E+ D+ ++ +T ++ A ++KPF R+L+ V +L
Sbjct: 63 EELCQDIKEM-VDIPIIMLTAKSSEEEKLAGFALGADDYVTKPFSPRELIYRVKAILKR 120
>gi|54027160|ref|YP_121402.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
gi|54018668|dbj|BAD60038.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+EV +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEVTVVGDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLR-TRSGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|320105191|ref|YP_004180782.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
gi|319752473|gb|ADV64233.1| response regulator receiver protein [Isosphaera pallida ATCC 43644]
Length = 145
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED + R AL G+ V++ +G +A V+ E L++ DI++P+++
Sbjct: 1 MSATILIVEDSPTVLRMASAALEDGGFRVLTATDGEAALQLVKREKPDLIVLDIILPKIN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ R +K++ ++ + + L+KPF LV+ V RLL
Sbjct: 61 GFQVCRHLKNDPASRHIKILLLSSKSGESDRYWGLRQGADDYLTKPFEPEGLVSTVTRLL 120
Query: 119 TI 120
Sbjct: 121 NR 122
>gi|315651808|ref|ZP_07904812.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
gi|315485938|gb|EFU76316.1| DNA-binding response regulator [Eubacterium saburreum DSM 3986]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L GY V+ +G A L+L D++MP+MDG
Sbjct: 5 KILVVDDEARMRKLVKDFLSIKGYIVLEAEDGEEALKVFDTNKDIKLILLDVMMPKMDGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + VM +T + + + ++KPF + LV V +L
Sbjct: 65 EVLEAIRQ-YSKVPVMMLTARSEERDELEGYKLGVDEYITKPFSPKILVARVEAVLRR 121
>gi|311740194|ref|ZP_07714026.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304749|gb|EFQ80820.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length = 234
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L +EV S N+G A RE + D++MP MDG E
Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D V+++T V ++KPF L +++ + ++
Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRR 124
>gi|226309940|ref|YP_002769834.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226092888|dbj|BAH41330.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 48/117 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL ED+ + + + L GY+V + G + LL+ DI+MP MDG+ L
Sbjct: 3 ILAVEDEKALLQTIAGVLADEGYQVDMADRGDDGLLLAERGIYDLLVLDIMMPGMDGLSL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R V+F+T +V + L KPF +L V LL +
Sbjct: 63 VRTLRTKGIMTPVLFLTAKDSVESRVEGLDAGADDYLVKPFAAEELTARVRALLRRQ 119
>gi|237807645|ref|YP_002892085.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
gi|237499906|gb|ACQ92499.1| two component transcriptional regulator, winged helix family
[Tolumonas auensis DSM 9187]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +DD ++ + L G+ V C++G ++ + L+L D++MP+++GI+
Sbjct: 3 RILLVDDDLELCSMQREYLSNEGFAVQMCHDGERGLEEALSGDYDLILLDVMMPKLNGID 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ V+ +T +SKP R+LV V +L
Sbjct: 63 VLRRLRN-HSNIPVLMLTAKGDDIDRIIGLELGADDYVSKPCTPRELVARVRAILRR 118
>gi|164688486|ref|ZP_02212514.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
16795]
gi|164602899|gb|EDQ96364.1| hypothetical protein CLOBAR_02131 [Clostridium bartlettii DSM
16795]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 48/116 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +MR+ + L + GY +G D + L++ DI+MP MDG E
Sbjct: 4 ILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGYEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ +T + + + KP +L+ + +L
Sbjct: 64 TETLRDGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPIDFEELILRIGAILRR 119
>gi|121535649|ref|ZP_01667454.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
gi|121305753|gb|EAX46690.1| two component transcriptional regulator, winged helix family
[Thermosinus carboxydivorans Nor1]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD +R ++ L + Y V G + LL+ DI++PE+ G+E
Sbjct: 2 RILVVEDDHALREAVVALLTEENYLVDEAATGDEGLYLAEQGIHDLLVLDIMLPEISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + ++ +T +VA + L+KPF + +L+ + LL
Sbjct: 62 IIKRVRATGHTMPILLLTARDSVADRVNGLETGADDYLTKPFAIPELLARIKALLRR 118
>gi|119025684|ref|YP_909529.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
gi|118765268|dbj|BAF39447.1| response regulator of two-component system [Bifidobacterium
adolescentis ATCC 15703]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ ++GASA L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVASDGASAVQAASTLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|46908593|ref|YP_014982.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|47093002|ref|ZP_00230782.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|226224969|ref|YP_002759076.1| two-component response regulator [Listeria monocytogenes Clip81459]
gi|254991991|ref|ZP_05274181.1| two-component response regulator [Listeria monocytogenes FSL
J2-064]
gi|46881865|gb|AAT05159.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b
str. F2365]
gi|47018656|gb|EAL09409.1| DNA-binding response regulator [Listeria monocytogenes str. 4b
H7858]
gi|225877431|emb|CAS06145.1| Putative two-component response regulator [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328465285|gb|EGF36542.1| two-component response regulator [Listeria monocytogenes 1816]
gi|328471342|gb|EGF42239.1| two-component response regulator [Listeria monocytogenes 220]
gi|332312851|gb|EGJ25946.1| Two-component response regulator [Listeria monocytogenes str. Scott
A]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|323483423|ref|ZP_08088811.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
WAL-14163]
gi|323691077|ref|ZP_08105359.1| DNA-binding response regulator ResD [Clostridium symbiosum
WAL-14673]
gi|323403277|gb|EGA95587.1| hypothetical protein HMPREF9474_00560 [Clostridium symbiosum
WAL-14163]
gi|323504863|gb|EGB20643.1| DNA-binding response regulator ResD [Clostridium symbiosum
WAL-14673]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV NNG + + EE F LL+ D+++P +D
Sbjct: 1 MS-RILIVEDEESIAELEKDYLELSGFEVEMENNGEAGLKRGLEEDFDLLILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E+ + ++ ++ ++KPF ++V V +
Sbjct: 60 GFEICKKVREV-KNTPIIMVSAKKDDIDKIRGLGLGADDYITKPFSPSEMVARVKAHMAR 118
>gi|317402238|gb|EFV82826.1| osmolarity two component response regulator [Achromobacter
xylosoxidans C54]
Length = 233
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R+ L L + GY+ + + + ++ LL+ D ++P DG +
Sbjct: 7 KLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLPSRITRYAPDLLVLDRMLPGGDGAD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E D+ V+ +T + KPF R+L+ + +L K
Sbjct: 67 ACRRLREQGEDIPVILLTARDEAVDRIIGLEAGADDYVGKPFDPRELLARIEAVLRRK 124
>gi|312967522|ref|ZP_07781737.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
2362-75]
gi|312287719|gb|EFR15624.1| acetoacetate metabolism regulatory protein atoC [Escherichia coli
2362-75]
Length = 461
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGALDYVIKPFDLDELNLIVQRALQLQS 124
>gi|304384695|ref|ZP_07367041.1| response regulator [Pediococcus acidilactici DSM 20284]
gi|304328889|gb|EFL96109.1| response regulator [Pediococcus acidilactici DSM 20284]
Length = 228
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + RF+ L GYE NG + + E F +L D+++PE++
Sbjct: 1 MS-KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR ++ +T ++ + KPF + +L+ + +L
Sbjct: 60 GIEVCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|168215727|ref|ZP_02641352.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|182382020|gb|EDT79499.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 232
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E +L++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPTLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 KN 122
K+
Sbjct: 119 KD 120
>gi|120434488|ref|YP_860186.1| two-component system response regulator [Gramella forsetii KT0803]
gi|117576638|emb|CAL65107.1| two-component system response regulator [Gramella forsetii KT0803]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY V++ +NGA A +++ L++ D++MP
Sbjct: 1 MKKKDIQILLVDDEPDILEIVGYNLSSEGYSVITADNGADAVKIAKKKKPHLIILDVMMP 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + ++ + F+T ++KP + LV++V
Sbjct: 61 EMDGIEACEQIRKMPDMEGTIITFLTARGEDYSQMAGFDAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|116072038|ref|ZP_01469306.1| two component transcriptional regulator, LuxR family protein
[Synechococcus sp. BL107]
gi|116065661|gb|EAU71419.1| two component transcriptional regulator, LuxR family protein
[Synechococcus sp. BL107]
Length = 245
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G++V + +G + K ++ ++++D++MP +DG
Sbjct: 20 RLLLVDDEPGLRTAVQAYLEDEGFDVATAVDGEEGFTKAQQMLPDVVISDVMMPRLDGYG 79
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E V+F+T A + KPF +LV V + +
Sbjct: 80 LLKKLRDDERLGGTPVIFLTAKGMTADRTQGYMAGVDDYIPKPFDPDELVARVRNVAQRQ 139
Query: 122 N 122
+
Sbjct: 140 H 140
>gi|163848921|ref|YP_001636965.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|163670210|gb|ABY36576.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
Length = 234
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L G+ V +G A R L++ D+++P +DGIE
Sbjct: 5 TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T A + L+KPF R+LV V +L
Sbjct: 65 VCRQLHRDTS-VFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120
>gi|327396459|dbj|BAK13880.1| transcriptional regulator BaeR [Pantoea ananatis AJ13355]
Length = 230
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ EDD D L L + GY+V+ +NG + ++V L+L D+++P M+G
Sbjct: 3 TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEQVGRWQPDLILLDVMLPVMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLAAIRRSG-DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120
>gi|268609051|ref|ZP_06142778.1| response regulator receiver protein [Ruminococcus flavefaciens
FD-1]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + L + Y V + +G D + ++ DI++P M+GIE
Sbjct: 2 RLLVVEDEVQLADALSEILKRNMYSVDTVYDGVDGLDNALTGVYDCIILDIMLPGMNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + V+ +T + V + L+KPF +L+ V L K
Sbjct: 62 VLRNLRQEHINTPVLLLTARSEVEDKINGLDCGADDYLTKPFITGELLARVRALTRRK 119
>gi|221633576|ref|YP_002522802.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermomicrobium roseum DSM 5159]
gi|221156239|gb|ACM05366.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Thermomicrobium roseum DSM 5159]
Length = 239
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDDD ++ + L + GY V+ + G +A ++ L++ DI++P +DG +
Sbjct: 3 TILLVEDDDTLQATIRYNLEREGYSVIVADAGEAALEQAAFARPDLVILDIMLPGLDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ R+ E + ++ +T L+KPF +R+L+ V
Sbjct: 63 VCRQLREQ-STVPILILTARDTEVDRVLGLELGADDYLTKPFSMRELLARVK 113
>gi|209548893|ref|YP_002280810.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534649|gb|ACI54584.1| response regulator receiver modulated diguanylate cyclase
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 457
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T A L+KP + L++ V LL
Sbjct: 61 GFEVCERLKANRKTAHIPVVMVTALDQPADRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL + + + +IKAL +V++ ++ +A + E F L++ + + D + L
Sbjct: 158 ILLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + + +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275
>gi|159036559|ref|YP_001535812.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157915394|gb|ABV96821.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ +G A RE ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRSEGFLPSFVADGERALAAFRESRPDIVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++AR + ++ +T + + KPF ++LV + L
Sbjct: 61 GIDVARSIRGE-SGVPIVMLTAKSDTVDVVLGLESGADDYVVKPFKPKELVARMRARLRR 119
>gi|159899985|ref|YP_001546232.1| response regulator receiver modulated diguanylate cyclase
[Herpetosiphon aurantiacus ATCC 23779]
gi|159893024|gb|ABX06104.1| response regulator receiver modulated diguanylate cyclase
[Herpetosiphon aurantiacus ATCC 23779]
Length = 412
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+A+D++ + + L L + GYEV N+G K + + L++ DI+MP +D
Sbjct: 1 MPERILVADDNEALSQLLELILVEHGYEVTLANDGGDLLAKAQLQIPDLMIVDILMPRID 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E R+ + ++ +T A+ + KPF + +L+ V L
Sbjct: 61 GYEAIRQLRNDTRLAHIPIIVLTARTAIEDVVTGFELGADDYIVKPFQMPELLARVRAQL 120
>gi|39995559|ref|NP_951510.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39982322|gb|AAR33783.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|298504564|gb|ADI83287.1| winged-helix transcriptional response regulator [Geobacter
sulfurreducens KN400]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + F+ + L + YEV + NG ++ + L++ D+++P+ DG+
Sbjct: 2 KVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+ +T +V + L+KPF +L+ V L+
Sbjct: 62 VVRELRERKNSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
>gi|56962305|ref|YP_174030.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56908542|dbj|BAD63069.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + IL+ +DD + L L + V++ +N A++ ++ L+ DI+MP
Sbjct: 1 MNAKTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G RR D+ ++F++ +A + K ++V V +L
Sbjct: 61 NGFAFCRRIRAK-SDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine
nucleotide-disulfide oxidoreductase [Syntrophobacter
fumaroxidans MPOB]
gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine
nucleotide-disulphide oxidoreductase [Syntrophobacter
fumaroxidans MPOB]
Length = 1139
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 58/107 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R + + L +AG+ V +GA A + + + + LL D+ MP MDG+E
Sbjct: 191 RILVVDDELVVRDSIKEWLDEAGFAVDMAASGAEAVEMLGRQSYGLLFLDVKMPGMDGVE 250
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ + A E+ P+L + +T +A + ++ + KPF + L
Sbjct: 251 VLKIAKEMHPELPAVMMTAYATIETAVEAMKVGAKDYIMKPFDIEAL 297
>gi|323706070|ref|ZP_08117639.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323534514|gb|EGB24296.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 228
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ + RFL L + GY V +G S + + + L++ D+++P +D
Sbjct: 1 MEESILIIEDEKRIARFLQIELEREGYSVTLEYSGNSGLREALDGNYDLIILDLMLPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + V+ ++ V L+KPF + +L+ + +L
Sbjct: 61 GFSVLRELRKK-SSTPVIILSAKDEVKDKVFGLDIGADDYLTKPFSIEELMARIRNVL-R 118
Query: 121 KN 122
KN
Sbjct: 119 KN 120
>gi|322417554|ref|YP_004196777.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M18]
gi|320123941|gb|ADW11501.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
M18]
Length = 510
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D+ D+ L L AG+E +G A + V E F+L++ DI MP M
Sbjct: 1 MQKDKILIVDDEADIALILKLQLEDAGFETERARDGVEALEAVEREQFTLIMLDIKMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R + V+ +T + + D+ +SKPF D++ +V R +
Sbjct: 61 DGLEVLSRIRSD--ETPVVMMTAHGSEDIAVDAMKKGALDYISKPFSSDDMLQKVERAIK 118
Query: 120 I 120
I
Sbjct: 119 I 119
>gi|190015554|ref|YP_001967362.1| DNA-binding response regulator [Bacillus cereus]
gi|217956894|ref|YP_002335990.1| DNA-binding response regulator [Bacillus cereus AH187]
gi|116584461|gb|ABK00578.1| DNA-binding response regulator [Bacillus cereus]
gi|217068621|gb|ACJ82869.1| DNA-binding response regulator [Bacillus cereus AH187]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 2 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 62 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117
>gi|117620336|ref|YP_857562.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117561743|gb|ABK38691.1| two-component hybrid sensor and regulator [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 376
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 41/123 (33%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D R L L +AGY V +G A D E P L+L DI MP MD
Sbjct: 1 MSE-ILIVDDMASNRYILRSLLEEAGYRVREATDGLQAVDTATEFPPDLVLMDINMPVMD 59
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E RR +L L V+FI+ + + + +SKPFH +++ V L
Sbjct: 60 GYEACRRIKQLPGQWCLPVLFISTNSGIGALEQAFQAGGCDYVSKPFHQLEVLARVQNQL 119
Query: 119 TIK 121
+K
Sbjct: 120 RLK 122
>gi|300785656|ref|YP_003765947.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|7339508|emb|CAB82844.1| putative response regulator [Amycolatopsis mediterranei]
gi|14530100|emb|CAC42209.1| rA protein [Amycolatopsis mediterranei]
gi|299795170|gb|ADJ45545.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD +RR L ALG+ G++V + G + R P L++ D+++P +DG E+
Sbjct: 4 ILLIEDDPLVRRGLELALGRHGHDVRTAETGEDGLRQFRSAPPELVVLDLMLPGIDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R P + V+ +T A + KP L + +L
Sbjct: 64 CRGIRAAGP-VPVIMLTARGDDFDVVGGLAAGADDYVVKPARPTVLDARIRAVLRR 118
>gi|85707059|ref|ZP_01038148.1| DNA-binding response regulator [Roseovarius sp. 217]
gi|85668500|gb|EAQ23372.1| DNA-binding response regulator [Roseovarius sp. 217]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ IL+ +D ++R + + L K G S + K+ + L++ D++MP
Sbjct: 1 MNEPPHILVVDDHREIRDAVTRYLEKNGMRATSARDAVDMDAKLANGKYDLIVLDVMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR + + ++ +T L+KPF+ R+LV + +L
Sbjct: 61 EDGLSVCRRLSASGS-VPILMLTALGEETDRIVGLEIGADDYLAKPFNPRELVARIKAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|16804460|ref|NP_465945.1| hypothetical protein lmo2422 [Listeria monocytogenes EGD-e]
gi|47095903|ref|ZP_00233507.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|217963478|ref|YP_002349156.1| regulatory protein VanR [Listeria monocytogenes HCC23]
gi|224500135|ref|ZP_03668484.1| regulatory protein VanR [Listeria monocytogenes Finland 1988]
gi|254827997|ref|ZP_05232684.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|254831155|ref|ZP_05235810.1| regulatory protein VanR [Listeria monocytogenes 10403S]
gi|254900440|ref|ZP_05260364.1| regulatory protein VanR [Listeria monocytogenes J0161]
gi|254913321|ref|ZP_05263333.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254937702|ref|ZP_05269399.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|284802860|ref|YP_003414725.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
gi|284996001|ref|YP_003417769.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
gi|16411910|emb|CAD00500.1| lmo2422 [Listeria monocytogenes EGD-e]
gi|33439124|gb|AAQ18702.1| putative response regulator [Listeria monocytogenes]
gi|47015780|gb|EAL06709.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a
F6854]
gi|217332748|gb|ACK38542.1| regulatory protein VanR [Listeria monocytogenes HCC23]
gi|258600380|gb|EEW13705.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165]
gi|258610305|gb|EEW22913.1| DNA-binding response regulator [Listeria monocytogenes F6900]
gi|284058422|gb|ADB69363.1| hypothetical protein LM5578_2617 [Listeria monocytogenes 08-5578]
gi|284061468|gb|ADB72407.1| hypothetical protein LM5923_2566 [Listeria monocytogenes 08-5923]
gi|293591325|gb|EFF99659.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|326388446|ref|ZP_08210042.1| response regulator [Novosphingobium nitrogenifigens DSM 19370]
gi|326207178|gb|EGD57999.1| response regulator [Novosphingobium nitrogenifigens DSM 19370]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+R +I L + Y V S + A ++ + P LL+ D+ +P+ DGI+
Sbjct: 15 RILVVEDDPDIRELIIAQLQREPYCVDSACSVEQARREMADTPADLLILDLNLPDGDGID 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + ++ +T L+KPF R+L+ V LL
Sbjct: 75 LCRQLRSDGYEGAIIMVTARDTAIDRVLGLELGADDYLTKPFEPRELLARVRNLLRR 131
>gi|325292659|ref|YP_004278523.1| Response regulator pleD [Agrobacterium sp. H13-3]
gi|325060512|gb|ADY64203.1| Response regulator pleD [Agrobacterium sp. H13-3]
Length = 456
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + L L ++VV+ +G A D +E ++L DI+MP MD
Sbjct: 1 MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALDICNQEQVDIILLDIMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + L+KP + L+ V L+
Sbjct: 61 GFEVCERLKANPKTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+ + +++AL EV + +A K PF L++ + + D +
Sbjct: 156 RVLVADGRASSQERIVRALKPV-AEVDAVTEPQAALLKAASNPFELVIVNSNFEDYDPLR 214
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E L ++ + A + + + +P +LV + K
Sbjct: 215 LCSQLRSLERTRFLPLLLVAEQGADDMVARALDLGVNDYILRPIDPNELVARSLTQIRRK 274
>gi|167588835|ref|ZP_02381223.1| two component transcriptional regulator, winged helix family
protein [Burkholderia ubonensis Bu]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + L++ D++MP
Sbjct: 1 MDKTDHVLIVDDDRGIRELIADYLEKNGMRVSLAANGREMRGVLDSGAPDLIVLDLMMPG 60
Query: 59 MDGIELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLVLCRELRVGKFRAVPVLMLTARGEETDRIVGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|170724123|ref|YP_001751811.1| osmolarity response regulator [Pseudomonas putida W619]
gi|169762126|gb|ACA75442.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L + GY + N ++ E F+L++ D+++P DG+
Sbjct: 12 KILIVDDDPGLSSLLERFFTSKGYRARAVPNTEQMDRLLQREVFNLVVLDLMLPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + + ++ +T L KPF+ +L+ V +L +
Sbjct: 72 ACKRLRQSNNQIPIIMLTAKGDELSRIKGLELGADDYLGKPFNPDELMARVKAVLRRQ 129
>gi|39998208|ref|NP_954159.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39985154|gb|AAR36509.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L AG++V GA A VRE L+L D+++P D
Sbjct: 1 MTGTILIVEDEEKIATLLRDYLRLAGFDVCCLAGGAEAAPWVREHAPDLVLLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + + ++ IT + KPF R++V V +L
Sbjct: 61 GLEICKDVR-VFSSVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 119
>gi|34557247|ref|NP_907062.1| two-component hybrid sensor and regulator [Wolinella succinogenes
DSM 1740]
gi|34482963|emb|CAE09962.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes]
Length = 372
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ IL +D + L+ L Y+V+ +G A + V+ E L+L DI+MP
Sbjct: 1 MSAHEATILAVDDTEVNVDILMGILKN--YDVIPALSGKEALEIVKNEKIDLILLDIMMP 58
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG E+ RR E + ++FIT + + ++KPF+ +L++ V+
Sbjct: 59 EMDGYEVCRRLKSEEATRSIPIIFITAKTTESDIKEGFERGAVDYVTKPFNPIELISRVD 118
Query: 116 RLLTIKN 122
L +++
Sbjct: 119 THLELRS 125
>gi|39936195|ref|NP_948471.1| response regulator PleD [Rhodopseudomonas palustris CGA009]
gi|192291911|ref|YP_001992516.1| response regulator PleD [Rhodopseudomonas palustris TIE-1]
gi|39650050|emb|CAE28573.1| putative diguanylate cyclase (GGDEF) with response regulator
receiver domain [Rhodopseudomonas palustris CGA009]
gi|192285660|gb|ACF02041.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris TIE-1]
Length = 457
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ +NG A + + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANVKLLEDRLSAEYFDVITASNGIQALEICQRAECDIVLLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRRLKSNPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L ++V N + A + + LL+ + + DG+
Sbjct: 157 RILLVDDRPSSYERLAPLLSAE-HDVDVETNPSEALFHAADGNYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAI-AEAENNARLLRGLEIGVNDYLLRPVDKNELMA 266
>gi|17232372|ref|NP_488920.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17134017|dbj|BAB76579.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 443
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + +AL AG+EV + +G A ++++ L+L D++MP MDG E
Sbjct: 11 ILIVDDTLTNLEIISEALIGAGFEVATAVDGKKALEQIQIRVPDLILLDVMMPIMDGFET 70
Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ V+F+T ++ + ++KPFH +++ ++ L +++
Sbjct: 71 CKNLKIQPETHDIPVIFMTAITDTNSKVEALSLGAVDYITKPFHKAEVLARISSHLQLRS 130
>gi|186680976|ref|YP_001864172.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186463428|gb|ACC79229.1| two component transcriptional regulator, LuxR family [Nostoc
punctiforme PCC 73102]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD R + L +GY V++ N+G A V E L++TDI+MP+M+
Sbjct: 1 MPLTILVVDDDLGTRLSVSDYLELSGYSVITANDGQEALFMVDEYNPDLIVTDIIMPQMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL RR + + L V+ +T L KPF L +L + LL
Sbjct: 61 GYELVRRVRQQAMFRLLPVILLTARTKTQERILGYQSGCDLYLPKPFELEELAAAIRNLL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|332292108|ref|YP_004430717.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
gi|332170194|gb|AEE19449.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
Length = 227
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M +K ILL +D+ D+ + L GY+V++ +NG A ++ L++ D++MP
Sbjct: 1 MKKKDLKILLVDDEPDILEIVGYNLSNEGYQVITGSNGVEAVKLAKKHSPHLIILDVMMP 60
Query: 58 EMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDGIE + F T ++KP + LV++V
Sbjct: 61 EMDGIEACEVIRANSDLDQTIITFFTARGEDYSQVAGFDAGADDYITKPIKPKVLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|299138655|ref|ZP_07031833.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
gi|298599291|gb|EFI55451.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
Length = 251
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ IL+ +DD ++R + L K G V +G + L++ DI+MP
Sbjct: 6 MDHVDHILVVDDDREIRELVSSYLKKNGLRVTIAADGRQMRSFLEANTVDLIVLDIMMPG 65
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T + L+KPF R+L+ + +
Sbjct: 66 HDGLVLCRELRSGKHKAIPVLLLTARSDEMDRIIGLEMGADDYLTKPFAARELLARIKAI 125
Query: 118 LTI 120
L
Sbjct: 126 LRR 128
>gi|295707302|ref|YP_003600377.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294804961|gb|ADF42027.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++R + L G +V + +G A + + +E L++ DI+MP DGI
Sbjct: 6 VLVVDDEQEIRNGIAIYLKNEGIKVFTAKDGIEAIEILNKEKVHLIILDIMMPRQDGIST 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ ++ + A ++KPF+ +L+ V L
Sbjct: 66 TFKIREQ-KNIPIIMLSAKSEDADKVLGLQVGADDYVTKPFNPLELIARVKSQLRR 120
>gi|253575388|ref|ZP_04852726.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845385|gb|EES73395.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 235
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + + L K Y V ++G A L++ D+++P++ G +
Sbjct: 5 KILIVDDEPSLLHVIKAYLEKQDYLVYETDSGQGALRLFENLQPDLIILDLMLPDLSGED 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ +T + L KPF R+L+ V LL
Sbjct: 65 VCKTIRKK-SDIPILMLTAKSGEDDLVHGLLIGADDYLVKPFSPRELMARVISLLRR 120
>gi|94263432|ref|ZP_01287245.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|94271768|ref|ZP_01292012.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93450346|gb|EAT01573.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93456162|gb|EAT06301.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 461
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 68/118 (57%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ MR FL L + G+ V +G +A ++R+E F LL++DI MP +G+E
Sbjct: 3 RILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMPPPNGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +A +L P+L V+ +T FA+ + L+KPF + ++ + V+ L+ +
Sbjct: 63 LLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPFKVDEIKDIVSTALSSR 120
>gi|271501297|ref|YP_003334322.1| winged helix family two component transcriptional regulator
[Dickeya dadantii Ech586]
gi|270344852|gb|ACZ77617.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech586]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 64/117 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KALG+AG+ V +G +A +++E ++L++ D+ +P MDG+
Sbjct: 2 RLLLVEDHPELAHWLKKALGEAGFAVDLVGDGVAADHLLQQEAYTLVVLDVSLPRMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T A+VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQNLPVLLLTARASVADRVKGLNLGADDYLTKPFELAELEARLRALLRR 118
>gi|228477889|ref|ZP_04062503.1| Two-component response transcriptional regulator [Streptococcus
salivarius SK126]
gi|228250379|gb|EEK09619.1| Two-component response transcriptional regulator [Streptococcus
salivarius SK126]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP
Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVMIMDIMMPIKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + V+ +T + + L+KP L++L+ + L
Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMSEIDDRVTGLDAGADDYLTKPISLKELLARLRS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|83649524|ref|YP_437959.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83637567|gb|ABC33534.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 242
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++LL +DD + R + + L + GY V ++G SA + L++ D+++P MD
Sbjct: 1 MTERLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + ++ +T L+KP R L+ + L
Sbjct: 61 GLSVCREVRKHYKG-PIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRR 119
>gi|84503161|ref|ZP_01001246.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597]
gi|84686727|ref|ZP_01014614.1| DNA-binding response regulator [Maritimibacter alkaliphilus
HTCC2654]
gi|114762576|ref|ZP_01442020.1| DNA-binding response regulator [Pelagibaca bermudensis HTCC2601]
gi|159046311|ref|YP_001541983.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
12]
gi|159046586|ref|YP_001542256.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
12]
gi|84388402|gb|EAQ01351.1| DNA-binding response regulator [Oceanicola batsensis HTCC2597]
gi|84665158|gb|EAQ11637.1| DNA-binding response regulator [Rhodobacterales bacterium HTCC2654]
gi|114544831|gb|EAU47836.1| DNA-binding response regulator [Roseovarius sp. HTCC2601]
gi|157914070|gb|ABV95502.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
12]
gi|157914345|gb|ABV95775.1| two component transcriptional regulator, winged helix family
[Dinoroseobacter shibae DFL 12]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D +R + + L K G + K+ F LL+ D++MP DG+
Sbjct: 6 HILIVDDHAQIRESVARFLEKNGMRTTVARDAVEMDAKLATGHFDLLVLDVMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR DL ++ +T L+KPF+ R+L+ + +L N
Sbjct: 66 VCRRLAPEG-DLPIIMLTALGEETDRIVGLEIGADDYLAKPFNPRELLARIKSVLRRSN 123
>gi|319442833|ref|ZP_07991989.1| two-component system response regulator MtrA [Corynebacterium
variabile DSM 44702]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+ V+ +GA A + R + L+L D+++P M+
Sbjct: 1 MAAKILVVDDDPAISEMLTMVLQGEGFSTVTVGDGAEAVEAARTQHPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R + + ++ +T + KPF ++
Sbjct: 61 GVDVCRAVRD-FSAVPIVMLTAKTDTVDVVLGLESGADDYVPKPFKPKE 108
>gi|309390021|gb|ADO77901.1| two component transcriptional regulator, winged helix family
[Halanaerobium praevalens DSM 2228]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++R + L AGYEV++ NG A + + E L++ D+++PE+DG+E
Sbjct: 3 KILVVEDEKNIRELIKFNLENAGYEVLTAENGKIALNSLEAE-IDLVVLDLMLPEVDGME 61
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + ++ +T ++KPF R+LV + +
Sbjct: 62 VCRQMRANKKLRQIPIIMLTAKGEEIERILGLEMGADDYMTKPFSPRELVARIKAIFRR 120
>gi|298242582|ref|ZP_06966389.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297555636|gb|EFH89500.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L K L + + V +G A P+ L++ DI++P + G E
Sbjct: 2 RILIIEDDPRLGPSLKKGLEGSHHAVDLLADGEDAVFMATSIPYDLVILDILLPGLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T V L+KPF +L V LL
Sbjct: 62 VCRQLREQGKTMPILLLTALGEVEHRVKGLDLGADDYLTKPFAFSELEARVRALLRR 118
>gi|291453069|ref|ZP_06592459.1| two-component system response regulator [Streptomyces albus J1074]
gi|291356018|gb|EFE82920.1| two-component system response regulator [Streptomyces albus J1074]
Length = 223
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|259047806|ref|ZP_05738207.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
gi|259035483|gb|EEW36738.1| response regulator VanR [Granulicatella adiacens ATCC 49175]
Length = 240
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M KIL+ +DD ++ L L YE+V +G A +K++ P +++ DI+MP +
Sbjct: 9 MPMKILVVDDDREIVELLTIYLKNESYEIVKAYDGKQALEKLKMYPDIDMIILDIMMPRL 68
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + + + L ++ ++ + ++KPF+ +++ V LL
Sbjct: 69 DGISVVHEVRKENAQLPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLR 128
Query: 120 I 120
Sbjct: 129 R 129
>gi|257057242|ref|YP_003135074.1| response regulator with CheY-like receiver domain-containing
protein and winged-helix DNA-binding domain-containing
protein [Saccharomonospora viridis DSM 43017]
gi|256587114|gb|ACU98247.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein
[Saccharomonospora viridis DSM 43017]
Length = 229
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 56/102 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V ++GA A +KV + ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLQFNGYQVDLASDGAQALEKVATDRPDAMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ARR + DL ++ +T AV+ L KPF
Sbjct: 62 VARRLRSVGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPF 103
>gi|226354940|ref|YP_002784680.1| response regulator CheY [Deinococcus deserti VCD115]
gi|226316930|gb|ACO44926.1| putative response regulator, CheY, Guanylate cyclase, GGDEF domain
with PAS/PAC sensor and Response Regulator Receiver
modulation [Deinococcus deserti VCD115]
Length = 448
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ D+ + L +AGY+V++ +G+S E L++ D+ +P+
Sbjct: 1 MTPNILLIEDNPDITNVVKYDLEQAGYQVMTAEDGSSGLTSAWENQPDLVILDLGLPDFS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ARR D+ V+ +T AV + KPF+ +L+ V L
Sbjct: 61 GEEVARRLRA-TSDVPVIILTAMDAVEQKVSLLRAGANDYIVKPFYPEELLARVEVQLRA 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|154505423|ref|ZP_02042161.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
gi|153794266|gb|EDN76686.1| hypothetical protein RUMGNA_02945 [Ruminococcus gnavus ATCC 29149]
Length = 232
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD ++R + L GYEV +G + + +E L + DI+MP MD
Sbjct: 3 MN-HILVVEDDKEIREGVKIYLQSQGYEVFLAADGIEGLEVMEKEDIHLAIVDIMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 62 GIRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRR 120
>gi|197118968|ref|YP_002139395.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197088328|gb|ACH39599.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 457
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ MR FL L GY V N A + E+ + ++++D++MP +
Sbjct: 1 MRARILVVDDELSMREFLSILLEGEGYLVDQAENAEDALRCMGEQRYEMVISDVLMPGLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL R P+ V+ IT F ++ + KPF + ++ V L
Sbjct: 61 GIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEVKVLVRNALEK 120
Query: 121 KN 122
++
Sbjct: 121 QS 122
>gi|16801578|ref|NP_471846.1| hypothetical protein lin2516 [Listeria innocua Clip11262]
gi|16415038|emb|CAC97743.1| lin2516 [Listeria innocua Clip11262]
Length = 231
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|186683314|ref|YP_001866510.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186465766|gb|ACC81567.1| multi-component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 624
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDDD + + + AL K Y V +G + ++ V + L+L D+++P++DGI
Sbjct: 2 RILLVEDDDLLAQAVATALTKQNYVVDIAADGEAGWELVNVCNYDLILLDVILPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ + + ++ +T + KPF ++L + LL N
Sbjct: 62 LCRQLRQEGYQMLILLLTAKDTKTDKVIGLDAGADDYVVKPFDFQELSARIRALLRRGN 120
Score = 84.8 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+I++ EDD + + ++L G + + + +D + E LL+ D MP ++G
Sbjct: 497 KARIMVVEDDPQILTVIQQSLETLGITLKTLEDSCYFWDTLTEFSPDLLILDAEMPYING 556
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL + L V+F+ + + A +SKP L+ + +
Sbjct: 557 IELCQVVRNDPCWKLLPVVFVVDNLSADIVEQIFAIGADDCVSKPIVSSTLIACILNRME 616
Query: 120 I 120
Sbjct: 617 R 617
Score = 33.6 bits (77), Expect = 8.5, Method: Composition-based stats.
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 24/125 (19%)
Query: 11 DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70
D + L+ G +V N +A + ++L D+ + E D ++L ++
Sbjct: 361 DRQVVEGLVNEAENQGLQVKIATNLTAARSIIPSLNPDVVLLDLDI-EEDSLKLLIELSQ 419
Query: 71 L----------------DPDLKVMFIT-------GFAAVALNPDSNAPKNAKVLSKPFHL 107
P + V+ T + L + L K
Sbjct: 420 RSATLGGTPSPTVGETPTPQIPVLVFTERNNFSDACGGLRLRLEVARAGGRAFLQKSMPP 479
Query: 108 RDLVN 112
+++
Sbjct: 480 NEILE 484
>gi|317125788|ref|YP_004099900.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315589876|gb|ADU49173.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 226
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM--DG 61
+IL+ EDD + + +ALG+AGY ++G +A + E + L++ D+++P + G
Sbjct: 2 RILVVEDDARLADVVRRALGEAGYAADVAHDGPAALEAFEVETYDLVVLDLMLPGIAGGG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ R D+ ++ +T ++ + L KPFHL +L+ V L+
Sbjct: 62 MEVCRVMRRHSSDVPILMLTALDSLRRKVEGLDAGADDYLVKPFHLSELLARVRALMRR 120
>gi|332655173|ref|ZP_08420914.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
gi|332516033|gb|EGJ45642.1| DNA-binding response regulator DltR [Ruminococcaceae bacterium D16]
Length = 225
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + R +I L K Y + +G A + + + L+ D++MP+MDG+
Sbjct: 2 RILLAEDERSLSRAVIALLEKNNYSADAVYDGQEALEYLEAGNYDALILDLMMPKMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ R E + V+ +T + V L+KPF ++L+ + +
Sbjct: 62 VLRTLREQGNPIPVLILTAKSEVDDKVLGLDTGANDYLTKPFSTQELMARIRAM 115
>gi|302036583|ref|YP_003796905.1| sigma-54 dependent DNA-binding response regulator [Candidatus
Nitrospira defluvii]
gi|300604647|emb|CBK40979.1| Sigma-54 dependent DNA-binding response regulator [Candidatus
Nitrospira defluvii]
Length = 466
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 54/118 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + L L GYEV +G A P L++ DI MP+MD
Sbjct: 1 MSASILIVDDEVSILNSLSSILEDEGYEVSVAKSGIEALKLCAVSPPELMMLDIWMPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E RR EL P +VM ++G ++ + + KP L ++ V L
Sbjct: 61 GLETLRRLRELVPQTQVMMMSGHGSIETAVKAIKLGAYDYIEKPLSLENVTLRVKHAL 118
>gi|295093801|emb|CBK82892.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus sp.
ART55/1]
Length = 224
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q IL+ +D+ ++ L K GY V + G +A +V + ++L D+ MP++D
Sbjct: 1 MSQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++F+T + + + KPF + +L + L
Sbjct: 60 GFTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|255689849|ref|ZP_05413524.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260624453|gb|EEX47324.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1373
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + + V++ +NG + ++++DI+MP MDGI L
Sbjct: 1115 LIVEDNEEIQKYIAESFSDS-FAVITADNGEEGKQQALSHIPDIIVSDIMMPIMDGITLC 1173
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + ++ +T ++ + L+KPF L + +N LL +
Sbjct: 1174 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1231
>gi|307153247|ref|YP_003888631.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
gi|306983475|gb|ADN15356.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
Length = 379
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +D D R L L + GY+V NG A + V+ P L+L DI MP M
Sbjct: 1 MDKGNILVVDDTPDNVRLLATMLSEKGYKVRKALNGQIAINTVQTVPPDLILLDINMPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G ++ + E D+ V+FI+ V + ++KPF +++ V
Sbjct: 61 NGYQVCQALKSDEKTQDIPVIFISALDDVLDKVKAFKVGGVDYITKPFQGEEILVRVENQ 120
Query: 118 LTI 120
LTI
Sbjct: 121 LTI 123
>gi|261406973|ref|YP_003243214.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261283436|gb|ACX65407.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+A+D+ D+ L L + GY V+ +G A++ + EP L + DI+MPE+DG
Sbjct: 11 RTILIADDESDITELLRLFLEREGYRVLEAISGREAWNILHREPVDLAVVDIMMPELDGY 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R E L V+ ++ +SKPF ++V + L
Sbjct: 71 QLIARIRENHR-LPVIILSAKNGDVDKVTGLGLGADDFISKPFSPIEVVARIKAQLRR 127
>gi|254254582|ref|ZP_04947899.1| Response regulator [Burkholderia dolosa AUO158]
gi|124899227|gb|EAY71070.1| Response regulator [Burkholderia dolosa AUO158]
Length = 246
Score = 143 bits (363), Expect = 6e-33, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD +R + L K G V NG + + + L++ D+++P
Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T L+KPF +R+L+ + +
Sbjct: 61 EDGLALCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|317125394|ref|YP_004099506.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315589482|gb|ADU48779.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 226
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ EDD + + + L G++VV ++G A L++ D+++P D
Sbjct: 1 MS-RILVVEDDLTINQTVTDRLRAEGFDVVQAHDGPRAVAAHATHEPDLVVLDVMLPGFD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + V+ +T P A ++KPF +R+LV V LL
Sbjct: 60 GLEVCRRIQASRA-VPVLMLTARDDETDLPVGLAVGADDYVTKPFRMRELVARVRALLRR 118
>gi|304405183|ref|ZP_07386843.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304346062|gb|EFM11896.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 228
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++R L L + G+ + +G A +R+E +L + D++MPE D
Sbjct: 1 MRTTILIADDDSNIRELLRFILQREGFRALEAADGEEASRVMRQEDVALAIVDVMMPEKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L D+ VM +T + + KPF +L+ V LL
Sbjct: 61 GLMLCEEIRRDY-DIPVMLLTARGELDDKARGFRSGTDDYMVKPFEPDELLYRVRALLRR 119
>gi|291558106|emb|CBL35223.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium siraeum
V10Sc8a]
Length = 227
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L AED+ M + L Y V + +GA A D R E + ++ DI+MP+ G+E
Sbjct: 2 KLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T A V L KPF + +L++ V +L K+
Sbjct: 62 VLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120
>gi|228928237|ref|ZP_04091278.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228946799|ref|ZP_04109104.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229122717|ref|ZP_04251927.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
gi|228660768|gb|EEL16398.1| hypothetical protein bcere0016_30100 [Bacillus cereus 95/8201]
gi|228812923|gb|EEM59239.1| hypothetical protein bthur0007_29360 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228831284|gb|EEM76880.1| hypothetical protein bthur0010_29360 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 245
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+
Sbjct: 26 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 85
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + + + ++KPF ++ L+ V LL
Sbjct: 86 GHELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRR 144
>gi|229816442|ref|ZP_04446743.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
13280]
gi|229807984|gb|EEP43785.1| hypothetical protein COLINT_03495 [Collinsella intestinalis DSM
13280]
Length = 278
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + L G++V NGA A + E F L + DI++P++DG E
Sbjct: 46 RILVVDDEKTITDLVGIYLRNEGFDVTLAYNGADAARLILEREFDLAVLDIMLPDVDGFE 105
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + + + + KPF +LV L
Sbjct: 106 LLRTIRTER-TYPVIMLTARDSQSDKIEGLTLGADDYMVKPFRPLELVARCKAQLRR 161
>gi|119716097|ref|YP_923062.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536758|gb|ABL81375.1| response regulator receiver [Nocardioides sp. JS614]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D+ + R L L GYEVV+ +G A + P +++ D+ +P++D
Sbjct: 1 MS-RVLVVDDEPQIVRALAINLRARGYEVVAAGDGGEALELAAAHPPDVVILDLGLPDLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + ++ ++G + D+ ++KPF + +L+ + +L
Sbjct: 60 GVDVIAGLRGWTA-VPILVLSGRSDSTDKVDALDAGADDYVTKPFGMDELMARLRAMLRR 118
>gi|331005798|ref|ZP_08329157.1| Two-component system regulatory protein [gamma proteobacterium
IMCC1989]
gi|330420435|gb|EGG94742.1| Two-component system regulatory protein [gamma proteobacterium
IMCC1989]
Length = 251
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ +R L + L + Y V S G E P+ + + DI +PEMDGIE
Sbjct: 2 RLLLAEDEKILRENLQQFLTRNSYSVDSAEEGREGLFLGSEHPYDIAIIDIGLPEMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L ++ + D V+ +T + L+KPFH +L+ +N LT ++
Sbjct: 62 LIKQLRQHKKDFPVLILTARDSWQDKVIGLEAGADDYLAKPFHNEELLARLNA-LTRRS 119
>gi|325856332|ref|ZP_08172048.1| transcriptional regulatory protein RprY [Prevotella denticola CRIS
18C-A]
gi|327312509|ref|YP_004327946.1| transcriptional regulatory protein RprY [Prevotella denticola
F0289]
gi|325483516|gb|EGC86488.1| transcriptional regulatory protein RprY [Prevotella denticola CRIS
18C-A]
gi|326944607|gb|AEA20492.1| transcriptional regulatory protein RprY [Prevotella denticola
F0289]
Length = 235
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KILL EDD+++ L + L GY+ C +G + Y + + + + D++MP+ DG
Sbjct: 4 NLKILLCEDDENLGTLLSEYLQAKGYQADLCPDGEAGYRAFLKNKYDICVLDVMMPKKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 64 FTLAQEIRQANTEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|300725849|ref|ZP_07059315.1| putative two-component system sensor histidine kinase/response
regulator, hybrid [Prevotella bryantii B14]
gi|299776896|gb|EFI73440.1| putative two-component system sensor histidine kinase/response
regulator, hybrid [Prevotella bryantii B14]
Length = 1355
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ ED+ ++ + + K LG Y +++ NG+ A++ +++E L+++DI+MP MDG
Sbjct: 1102 NYTILIVEDNLELLQLMQKILGNL-YHIITAKNGSQAWNIIQKESLDLVISDIMMPIMDG 1160
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL- 118
+EL R + V+ +T ++KPF + +L + LL
Sbjct: 1161 LELTRLIKTNHDYQLIPVVLLTAKTTTEDKNKGLEAGADDFMNKPFSMEELKMRIANLLD 1220
Query: 119 TIKN 122
KN
Sbjct: 1221 NRKN 1224
>gi|75763337|ref|ZP_00743078.1| Two-component response regulator vanRB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228908456|ref|ZP_04072299.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
200]
gi|74489174|gb|EAO52649.1| Two-component response regulator vanRB [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|228851247|gb|EEM96058.1| Two-component response regulator vanRB [Bacillus thuringiensis IBL
200]
Length = 228
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y VV ++G + ++ F L+L D++MP ++G
Sbjct: 10 NYHILVVEDDQEIQELIKQFLMTQHYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+++ ++ ++ +T ++KPF L+ V +L
Sbjct: 70 FEVSKMIRSQ-SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 127
>gi|53717679|ref|YP_106665.1| response regulator protein [Burkholderia pseudomallei K96243]
gi|53724235|ref|YP_104202.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
gi|67641558|ref|ZP_00440334.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
4]
gi|76811612|ref|YP_331671.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
gi|121599653|ref|YP_994556.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
gi|124386101|ref|YP_001027828.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
gi|126440707|ref|YP_001057097.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
gi|126450961|ref|YP_001082224.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
gi|126451555|ref|YP_001064327.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|134281570|ref|ZP_01768278.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
gi|167001629|ref|ZP_02267423.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
gi|167717409|ref|ZP_02400645.1| DNA-binding response regulator [Burkholderia pseudomallei DM98]
gi|167736451|ref|ZP_02409225.1| DNA-binding response regulator [Burkholderia pseudomallei 14]
gi|167813526|ref|ZP_02445206.1| DNA-binding response regulator [Burkholderia pseudomallei 91]
gi|167822070|ref|ZP_02453541.1| DNA-binding response regulator [Burkholderia pseudomallei 9]
gi|167843678|ref|ZP_02469186.1| DNA-binding response regulator [Burkholderia pseudomallei B7210]
gi|167892152|ref|ZP_02479554.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
gi|167900664|ref|ZP_02487869.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
13177]
gi|167908883|ref|ZP_02495974.1| DNA-binding response regulator [Burkholderia pseudomallei 112]
gi|167916922|ref|ZP_02504013.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215]
gi|217423889|ref|ZP_03455389.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|226193228|ref|ZP_03788838.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
9]
gi|237814435|ref|YP_002898886.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
MSHR346]
gi|242315495|ref|ZP_04814511.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
gi|254174802|ref|ZP_04881463.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
gi|254184105|ref|ZP_04890696.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
gi|254186570|ref|ZP_04893087.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
52237]
gi|254194715|ref|ZP_04901146.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
gi|254201274|ref|ZP_04907638.1| DNA-binding response regulator [Burkholderia mallei FMH]
gi|254206615|ref|ZP_04912966.1| DNA-binding response regulator [Burkholderia mallei JHU]
gi|254257956|ref|ZP_04949010.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
gi|254298627|ref|ZP_04966078.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
gi|254357348|ref|ZP_04973622.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
gi|52208093|emb|CAH34023.1| response regulator protein [Burkholderia pseudomallei K96243]
gi|52427658|gb|AAU48251.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344]
gi|76581065|gb|ABA50540.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b]
gi|121228463|gb|ABM50981.1| DNA-binding response regulator [Burkholderia mallei SAVP1]
gi|124294121|gb|ABN03390.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229]
gi|126220200|gb|ABN83706.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
gi|126225197|gb|ABN88737.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|126243831|gb|ABO06924.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247]
gi|134247237|gb|EBA47323.1| DNA-binding response regulator [Burkholderia pseudomallei 305]
gi|147747168|gb|EDK54244.1| DNA-binding response regulator [Burkholderia mallei FMH]
gi|147752157|gb|EDK59223.1| DNA-binding response regulator [Burkholderia mallei JHU]
gi|148026412|gb|EDK84497.1| DNA-binding response regulator [Burkholderia mallei 2002721280]
gi|157808646|gb|EDO85816.1| DNA-binding response regulator [Burkholderia pseudomallei 406e]
gi|157934255|gb|EDO89925.1| DNA-binding response regulator [Burkholderia pseudomallei Pasteur
52237]
gi|160695847|gb|EDP85817.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399]
gi|169651465|gb|EDS84158.1| DNA-binding response regulator [Burkholderia pseudomallei S13]
gi|184214637|gb|EDU11680.1| DNA-binding response regulator [Burkholderia pseudomallei 1655]
gi|217392952|gb|EEC32974.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|225934828|gb|EEH30805.1| DNA-binding response regulator [Burkholderia pseudomallei Pakistan
9]
gi|237503053|gb|ACQ95371.1| DNA-binding response regulator TctD [Burkholderia pseudomallei
MSHR346]
gi|238522511|gb|EEP85955.1| DNA-binding response regulator TctD [Burkholderia mallei GB8 horse
4]
gi|242138734|gb|EES25136.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
gi|243062639|gb|EES44825.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
gi|254216645|gb|EET06029.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ +++ L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|255262515|ref|ZP_05341857.1| phosphate regulon transcriptional regulatory protein PhoB
[Thalassiobium sp. R2A62]
gi|255104850|gb|EET47524.1| phosphate regulon transcriptional regulatory protein PhoB
[Thalassiobium sp. R2A62]
Length = 229
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L L G+ V +G A + E +++ D ++P + GIE+
Sbjct: 8 VLVVEDEPAQREVLAYNLEAEGFIVRIAEDGEEALMLIDEVAPDVIVLDWMLPNVSGIEV 67
Query: 65 AR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++ ++ + + KP+ + +L+ V L
Sbjct: 68 CRQTKTKAATRNIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRTHLRR 125
>gi|229070198|ref|ZP_04203454.1| Two-component response regulator vanRB [Bacillus cereus F65185]
gi|228712922|gb|EEL64841.1| Two-component response regulator vanRB [Bacillus cereus F65185]
Length = 221
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y V+ ++G + ++ F L+L D++MP ++G
Sbjct: 3 NYHILVVEDDQEIQELIKQFLMTQHYTVIVASDGLEGMTQFNKQSFDLILLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+++ ++ ++ +T ++KPF L+ V +L
Sbjct: 63 FEVSKMIRSQ-SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120
>gi|255100919|ref|ZP_05329896.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255306809|ref|ZP_05350980.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 63/121 (52%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E+ ++ L D+++P++
Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTEKDITIALLDVMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ LL
Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|225848943|ref|YP_002729107.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643812|gb|ACN98862.1| transcriptional activator protein IrlR [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 219
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + L + L GY V + A + ++ + +++ D+++P++DG
Sbjct: 2 KVLLVEDNIGLNASLKEILELNGYIVDGAFDADEALNFLQNSFYDVIILDVMLPDIDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + E V+ +T + ++KPF + +L+ + + +
Sbjct: 62 LLKLIREKGIKTPVIMLTAKDQLRDKVKGLELGADDYITKPFEVEELLARIKAVARRSS 120
>gi|228919426|ref|ZP_04082791.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228840213|gb|EEM85489.1| Two-component response regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 228
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED + +++ L +EV + NG + + +L D++MP MDG
Sbjct: 5 SMRLLVIEDTTSLLESIVQILRDE-FEVDTAINGEDGLFLALQNIYDAILLDVMMPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 64 FEVIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 122
>gi|145294521|ref|YP_001137342.1| hypothetical protein cgR_0476 [Corynebacterium glutamicum R]
gi|140844441|dbj|BAF53440.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G++ + +G +A + ++L D+++P M
Sbjct: 1 MT-TILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNEIDIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCKELRSV-STVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|323359410|ref|YP_004225806.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323275781|dbj|BAJ75926.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 244
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G++V + +G A R+ ++ DI+MP++DG+
Sbjct: 19 RVLVVDDEQMLTDLLSMALRMEGWDVRTAGSGFDALQAARDFAPDAMVLDIMMPDLDGMA 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D+ V+F+T AVA ++KPF L ++V + L+
Sbjct: 79 VLQRLRHSGNDVPVLFLTAKDAVADRVAGLTAGGDDYVTKPFSLEEVVARLRGLMRR 135
>gi|288818738|ref|YP_003433086.1| two-component transcriptional regulator [Hydrogenobacter
thermophilus TK-6]
gi|288788138|dbj|BAI69885.1| two-component transcriptional regulator [Hydrogenobacter
thermophilus TK-6]
gi|308752325|gb|ADO45808.1| two component transcriptional regulator, winged helix family
[Hydrogenobacter thermophilus TK-6]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD + + + L GY VV +G SA + E + L+L DI++P+ DG++
Sbjct: 2 KVLLVEDDTYVGEMIKEGLTYEGYHVVWVRDGFSAMREALEGDYHLILLDIMLPKFDGMK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E+ D+ V+ IT + V + + ++KPF ++++ +N +L
Sbjct: 62 VLSRIREV-KDIPVIMITAKSQVEDKVEGLSAGADDYITKPFSFKEVLARINAVLRR 117
>gi|298489896|ref|YP_003720073.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298231814|gb|ADI62950.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED+ + RF+ L GY+V +G +A R+ L++ D ++P +
Sbjct: 1 MT-HILLVEDEVKLARFIELELSYEGYQVSVAYDGLTALTAARQLNLDLIILDWMLPGVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T V+ + KPF L +L+ V L
Sbjct: 60 GLEICRRLRASGDKVPIILLTAKDEVSACVAGLDAGADDYVVKPFSLEELLARVRAHLRR 119
>gi|322421476|ref|YP_004200699.1| response regulator receiver modulated metal dependent
phosphohydrolase [Geobacter sp. M18]
gi|320127863|gb|ADW15423.1| response regulator receiver modulated metal dependent
phosphohydrolase [Geobacter sp. M18]
Length = 534
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL +D+ L L G+EVV+ +NG A +++ ++L D++MP
Sbjct: 1 MSEPKPRILCVDDEPMNLTLLEAMLLLRGFEVVTASNGLEALGEIQRGRVDIVLLDVMMP 60
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG E+ RR E ++ V+ IT +AA +SKPF +++ +
Sbjct: 61 EMDGFEVCRRIKAEERYRNIPVVMITAYAARENRIMGIEAGAEDFISKPFDSAEVLARIG 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 MLLKVK 126
>gi|213964807|ref|ZP_03393006.1| transcriptional regulatory protein [Corynebacterium amycolatum
SK46]
gi|213952343|gb|EEB63726.1| transcriptional regulatory protein [Corynebacterium amycolatum
SK46]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + L + + G++ V ++G A E L+L D+++P M
Sbjct: 1 MSSKILVVDDDPAIAEMLTMVMEREGFDTVVVDDGLEAVKAAERENPDLILLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R E + ++ +T ++KPF ++
Sbjct: 61 GVDVCRTVRE-TSAVPIIMLTAKTDTVDVVLGLESGADDYVTKPFKPKE 108
>gi|208702171|ref|YP_002267282.1| DNA-binding response regulator [Bacillus cereus H3081.97]
gi|208658026|gb|ACI30396.1| DNA-binding response regulator [Bacillus cereus H3081.97]
Length = 226
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 2 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 62 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 117
>gi|167568211|ref|ZP_02361085.1| DNA-binding response regulator [Burkholderia oklahomensis C6786]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ +++ L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|149278618|ref|ZP_01884754.1| two component transcriptional regulator, winged helix family
protein [Pedobacter sp. BAL39]
gi|149230613|gb|EDM35996.1| two component transcriptional regulator, winged helix family
protein [Pedobacter sp. BAL39]
Length = 234
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+D + + L GY+V + +G +A +EE F+L++ D+++PEMDG +
Sbjct: 6 RILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGFQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++F+T L KPF+L +L+ V L+
Sbjct: 66 VCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKR 122
>gi|170722955|ref|YP_001750643.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169760958|gb|ACA74274.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V +C++G SA + E + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLGSWLTQEGFAVRACHDGQSARRALAEHAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ +L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSDHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|30021310|ref|NP_832941.1| two-component response regulator [Bacillus cereus ATCC 14579]
gi|29896864|gb|AAP10142.1| Two-component response regulator [Bacillus cereus ATCC 14579]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P +DG+
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGIDGLH 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ +T + L KPF +L+ + L+
Sbjct: 62 VLQRLRADNNATPVLLLTAKDTIDDRVTGLDLGADDYLVKPFAFDELLARIRVLMRR 118
>gi|325914197|ref|ZP_08176549.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325539581|gb|EGD11225.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
Length = 238
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ G A + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEALALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLR 126
>gi|237711967|ref|ZP_04542448.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229454662|gb|EEO60383.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1383
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++++ +++ L Y ++ NG A + + ++ L+++D++MPEMDG+E
Sbjct: 1133 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1191
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + + + KP L L +++ LL +
Sbjct: 1192 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKRR 1251
>gi|229495757|ref|ZP_04389485.1| DNA-binding response regulator/sensor histidine kinase
[Porphyromonas endodontalis ATCC 35406]
gi|229317331|gb|EEN83236.1| DNA-binding response regulator/sensor histidine kinase
[Porphyromonas endodontalis ATCC 35406]
Length = 969
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ D+ ++ L Y + NG +K +E L++TD++MPEMDG+E
Sbjct: 711 HLLIVEDNRDIAAYIGSQLANH-YAISYAANGLEGLEKAQELVPDLIITDLMMPEMDGLE 769
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + + + ++ +T + L+KPF+ +L V +LL +
Sbjct: 770 LCRQVRKNEIISHIPIIVVTAKISEEERIKGIEAGADAYLAKPFNSDELRTRVEKLLEGR 829
>gi|251799571|ref|YP_003014302.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247547197|gb|ACT04216.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 233
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD ++ + L GY+V+ NG A + + +E L++ D++MPEM+G+E+
Sbjct: 6 ILIADDDLEIAELIKIYLTNEGYQVLIAGNGREAMELIAKESVQLMILDVMMPEMNGLEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++ A + KPF+ +L+ V LL
Sbjct: 66 VRAVRAEY-GIPILMLSAKAEDMDKIMGLTTGADDYMVKPFNALELIARVKSLLRR 120
>gi|146283707|ref|YP_001173860.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
gi|145571912|gb|ABP81018.1| transcriptional activator CopR [Pseudomonas stutzeri A1501]
Length = 244
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E
Sbjct: 21 KLLVAEDEPKTGSYLQQGLTEAGFTVDRVTTGTDALQYALSEVYDLLILDVMMPGLDGWE 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+F+T V L KPF +L+ V LL
Sbjct: 81 VLRMVRSAGHEIPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRR 137
>gi|124024913|ref|YP_001014029.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
gi|123959981|gb|ABM74764.1| two-component response regulator [Prochlorococcus marinus str.
NATL1A]
Length = 265
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVAGHLEHTGFDVQKAEDGIKGQALALQYAPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT + ++KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTSAIPILMITALGGIKDKVTGFNSGADDYITKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
N
Sbjct: 121 RRTN 124
>gi|170722475|ref|YP_001750163.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169760478|gb|ACA73794.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 220
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G S ++ E F L++ D+ +P MDGIE
Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A+ L KPF L +L + LL
Sbjct: 62 LLRRVRAGGDSLPVLILTARDALDDRITGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|219849054|ref|YP_002463487.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219543313|gb|ACL25051.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 247
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+A+DD + R + AL YE V NG A + F L+ D++MP +DG
Sbjct: 20 KRRILVADDDPSIGRLIQTALPAQQYETVVVANGMEALEAFDRGQFDLVFLDVMMPFVDG 79
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ IT + ++KPF + + V V +L
Sbjct: 80 FDACERIRAK-SDVPIVIITARDGTDDIVQGFRRGADEYITKPFRVAEFVARVEAILRR 137
>gi|40021671|gb|AAR37056.1| VanRD5 [Enterococcus faecium]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLR 117
>gi|87199648|ref|YP_496905.1| two component transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87135329|gb|ABD26071.1| two component transcriptional regulator, winged helix family
[Novosphingobium aromaticivorans DSM 12444]
Length = 227
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ L + L + G +V +G++ + F +L D+ +P+MDG E
Sbjct: 2 RILIIEDEIELAGALHRGLTQEGCKVTLATDGSTGLELAASLAFDFILLDVNLPDMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E + ++ +T +A L+KPF +L+ ++ + +
Sbjct: 62 VCARLREQGSTMPIIMVTARDEIADRIRGLKGGADDYLTKPFAFEELLARMDA-IKRR 118
>gi|17231152|ref|NP_487700.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|75909833|ref|YP_324129.1| two component LuxR family transcriptional regulator [Anabaena
variabilis ATCC 29413]
gi|17132793|dbj|BAB75359.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|75703558|gb|ABA23234.1| two component transcriptional regulator, LuxR family [Anabaena
variabilis ATCC 29413]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +++LL +DD ++ + L GYEV++ NG A + + + +++ D++MPE
Sbjct: 16 MKDHKRLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEHDVPDMIICDVMMPE 75
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG + E + V+F++ A + KPF +LV +V
Sbjct: 76 MDGYTFVEQVRQNERTSWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVES 135
Query: 117 LLT 119
L
Sbjct: 136 SLK 138
>gi|75760731|ref|ZP_00740754.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|74491786|gb|EAO54979.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
Length = 233
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 6 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 66 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 122
>gi|307944879|ref|ZP_07660216.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
gi|307771803|gb|EFO31027.1| transcriptional regulatory protein OmpR [Roseibium sp. TrichSKD4]
Length = 241
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ EDD ++ + L + V N + + EE L+L D+++P D
Sbjct: 5 MTRHILVVEDDPEIGDLIRHHLEEQDLRVTVVENATAMDRTLSEEQVDLILLDLMLPGED 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + RR P + ++ ++ L KPF+ R+LV V +L
Sbjct: 65 GISVCRRLRSASP-VPIIIVSARGDDFDRVIGLEVGADDYLPKPFNPRELVARVRAMLRR 123
>gi|212691672|ref|ZP_03299800.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
gi|265753202|ref|ZP_06088771.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|212665861|gb|EEB26433.1| hypothetical protein BACDOR_01167 [Bacteroides dorei DSM 17855]
gi|263236388|gb|EEZ21883.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1386
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++++ +++ L Y ++ NG A + + ++ L+++D++MPEMDG+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + + + KP L L +++ LL +
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKRR 1254
>gi|189465100|ref|ZP_03013885.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
17393]
gi|189437374|gb|EDV06359.1| hypothetical protein BACINT_01444 [Bacteroides intestinalis DSM
17393]
Length = 1342
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++++R L++ K Y V +G DK +E ++L+DI+MP+M GIE
Sbjct: 1093 KILIVEDNEELRGLLVRLFSKV-YSVCEAQDGEEGLDKTKEIQPDIVLSDIMMPKMSGIE 1151
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + V+ +T A ++KPF+++ L N L+ +
Sbjct: 1152 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNSR 1211
>gi|182412598|ref|YP_001817664.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
gi|177839812|gb|ACB74064.1| multi-sensor hybrid histidine kinase [Opitutus terrae PB90-1]
Length = 1559
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLA+D+ DMR ++++ L + Y++ + +G +A VR L+L DI+MP +DG E
Sbjct: 638 RVLLADDNADMRDYVMRLLREH-YDIAAVADGQAALALVRHWKPDLVLADIMMPGLDGFE 696
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL---- 117
L + E L V+ ++ A + L KPF R+L+ V
Sbjct: 697 LLQALRESPATQQLPVILLSARAGEESRSEGLEAGADDYLIKPFSARELLARVQSQLHLA 756
Query: 118 -LTIK 121
L K
Sbjct: 757 ELRRK 761
Score = 86.0 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 4/118 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL ED R L L + G+ V + + A E F LL++DI +P+ G
Sbjct: 1439 RRVLLVEDHAPTRSALESLLVRRGFSVTAAASATEARALAASEHFDLLISDIGLPDGSGY 1498
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL---VNEVNRL 117
+L E L + +TG+ S L+KP ++ L + +
Sbjct: 1499 DLMAEFRERY-GLVGIALTGYGMEEDVMRSRRAGFKMHLTKPVRIQHLDQALATLQAA 1555
>gi|160890309|ref|ZP_02071312.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
gi|156860041|gb|EDO53472.1| hypothetical protein BACUNI_02750 [Bacteroides uniformis ATCC 8492]
Length = 240
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + +G K + +L+ D++MP M
Sbjct: 1 MEKITVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|328885015|emb|CCA58254.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 245
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ D+++P DG+
Sbjct: 19 RRVLVVEDDATIVEAISARLRAEGFLVQTATDGPAAVDAAEAWQPDLMVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|320333134|ref|YP_004169845.1| winged helix family two component transcriptional regulator
[Deinococcus maricopensis DSM 21211]
gi|319754423|gb|ADV66180.1| two component transcriptional regulator, winged helix family
[Deinococcus maricopensis DSM 21211]
Length = 222
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+ILL ED+ D+ R + L ++GY V+S +G + RE L++ D+ +P+ D
Sbjct: 1 MEQRILLIEDNPDITRVVQYELEQSGYRVLSAPDGITGLTSARENNPDLVILDLGLPDFD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ARR + + ++ +T AV + ++KPFH +LV V L
Sbjct: 61 GAEIARRLRK-TSAVPIIILTAMDAVDRKVNLLEAGADDYMTKPFHPEELVARVKVQLRH 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|318061516|ref|ZP_07980237.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|333024459|ref|ZP_08452523.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
gi|332744311|gb|EGJ74752.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
Length = 263
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA + LL+ D+++P DG+
Sbjct: 37 RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 96
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R++ V+ LL
Sbjct: 97 EVCRRVQAHRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 153
>gi|295681071|ref|YP_003609645.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295440966|gb|ADG20134.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 246
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +DD +R L L K G V NG + L++ D+++P DG
Sbjct: 4 SDHVLIVDDDRGIRELLAGYLEKNGVRVSLAANGRQMRATLENGAPDLIVLDLMLPGEDG 63
Query: 62 IELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + ++ +T + A L+KPF R+L+ + +L
Sbjct: 64 LVLCRELRAGKFRAVPILMLTARSEEADRIVGLEMGADDYLTKPFAARELLARIRSVLRR 123
>gi|255023092|ref|ZP_05295078.1| regulatory protein VanR [Listeria monocytogenes FSL J1-208]
Length = 231
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|218899823|ref|YP_002448234.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228903185|ref|ZP_04067319.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
4222]
gi|228910522|ref|ZP_04074336.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
200]
gi|228967768|ref|ZP_04128784.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|218545601|gb|ACK97995.1| DNA-binding response regulator [Bacillus cereus G9842]
gi|228791922|gb|EEM39508.1| hypothetical protein bthur0004_45570 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228849086|gb|EEM93926.1| hypothetical protein bthur0013_46680 [Bacillus thuringiensis IBL
200]
gi|228856467|gb|EEN00993.1| hypothetical protein bthur0014_43500 [Bacillus thuringiensis IBL
4222]
Length = 229
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|27461219|gb|AAM09851.1| response regulator [Enterococcus faecium]
gi|109240379|dbj|BAE96113.1| response regulator [Enterococcus raffinosus]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + + L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGRDALNCIESVELDLAILDIMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLR 117
>gi|83719158|ref|YP_440599.1| DNA-binding response regulator [Burkholderia thailandensis E264]
gi|167617392|ref|ZP_02386023.1| DNA-binding response regulator [Burkholderia thailandensis Bt4]
gi|83652983|gb|ABC37046.1| DNA-binding response regulator [Burkholderia thailandensis E264]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ +++ L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|72162948|ref|YP_290605.1| response regulator receiver [Thermobifida fusca YX]
gi|71916680|gb|AAZ56582.1| response regulator receiver [Thermobifida fusca YX]
Length = 222
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GY V +G D+ R LL+ D+ +PE+DG+E+
Sbjct: 4 VLLAEDDASISEPLARALRREGYSVDVTVDGMETLDRARSGDIDLLVLDLGLPELDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR ++ +T A ++KPF L +L+ V LL
Sbjct: 64 ARRLRSEGHGTPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|294643180|ref|ZP_06721009.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|292641478|gb|EFF59667.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
Length = 1307
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1179
>gi|293369022|ref|ZP_06615621.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292635894|gb|EFF54387.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1307
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1062 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1120
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1121 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1179
>gi|260885496|ref|ZP_05735136.2| DNA-binding response regulator/sensor histidine kinase [Prevotella
tannerae ATCC 51259]
gi|260852493|gb|EEX72362.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
tannerae ATCC 51259]
Length = 952
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L Y V NG K E L++TD++MPEM G++
Sbjct: 669 RILIIEDNKDVAAYIGSQLTSR-YSVCYAENGKVGLQKAEELVPDLIITDLMMPEMGGLD 727
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E+ + ++ IT L KPF+ +L V +LL +
Sbjct: 728 VCRAIRTNEIVNHIPIIVITAKNTEEDRIKGLEAGADAYLVKPFNSEELRTRVEKLLEQR 787
Query: 122 N 122
+
Sbjct: 788 S 788
>gi|258611893|ref|ZP_05242924.2| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|293596316|ref|ZP_05230458.2| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|293597011|ref|ZP_05266512.2| DNA-binding response regulator [Listeria monocytogenes HPB2262]
gi|300765250|ref|ZP_07075235.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
gi|258606949|gb|EEW19557.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503]
gi|293584711|gb|EFF96743.1| DNA-binding response regulator [Listeria monocytogenes HPB2262]
gi|293594699|gb|EFG02460.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194]
gi|300514071|gb|EFK41133.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017]
Length = 233
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 3 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 63 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122
>gi|323341209|ref|ZP_08081456.1| response regulator [Lactobacillus ruminis ATCC 25644]
gi|323091403|gb|EFZ34028.1| response regulator [Lactobacillus ruminis ATCC 25644]
Length = 243
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD D+R + L YEV+ NG + +E L++ DI+MP++
Sbjct: 6 MRKGKILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKL 64
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+++ + ++ V+F+T + + L+KPF +L+ V LL
Sbjct: 65 NGLKVCEEIRK-TSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLR 123
Query: 120 I 120
Sbjct: 124 R 124
>gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family
[Prochlorococcus marinus str. MIT 9202]
gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family
[Prochlorococcus marinus str. MIT 9202]
Length = 242
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ +R + L G+E+ +G ++K + L+++D++MP +G
Sbjct: 16 RILLVDDEPGLRAAVKTFLEDEGFEIFIAVDGEDGWEKAKTIFPDLIISDVMMPRANGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T + +SKPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTEGYLAGVDDYISKPFDPDELAARVKNVINRQ 135
>gi|154495137|ref|ZP_02034142.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC
43184]
gi|154085687|gb|EDN84732.1| hypothetical protein PARMER_04184 [Parabacteroides merdae ATCC
43184]
Length = 230
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ILL ED+ + + AL + ++V++ NG D+ + L++ D++MPE+DG
Sbjct: 4 KKSILLVEDEASLSMIIKDALEEEDFQVITAGNGLQGIDRFYKYAPDLIIADVMMPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ RR + + ++ V+F++ ++ + KPF LR+LV LL
Sbjct: 64 FEMIRRIRKENKEVPVLFLSARSSTDDIVFGFELGANDYVRKPFSLRELVVRAKALL 120
>gi|110833486|ref|YP_692345.1| two-component response regulatory protein [Alcanivorax borkumensis
SK2]
gi|110646597|emb|CAL16073.1| Probable two-component response regulatory protein [Alcanivorax
borkumensis SK2]
Length = 227
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ + + + L A ++ ++ +A E+ F ++ D+++P+ D
Sbjct: 1 MS-HILIVEDEPRLSQLVADYLHHAHFQTKQTDSAKAAMAMAHEQSFQAIILDLMLPDGD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ ++ +T + KPF R+LV V +L
Sbjct: 60 GMEVCKTIRQ-HSNVPIIMVTARVDEVDRLLGLELGADDYICKPFSPRELVARVKAVLRR 118
Query: 121 KN 122
N
Sbjct: 119 AN 120
>gi|327441682|dbj|BAK18047.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Solibacillus silvestris
StLB046]
Length = 222
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R+ + L K G+E + ++G A + +++EP L + D++MP+MDG+
Sbjct: 2 RILVVDDDAFIRKLIGIHLKKEGFEALFASDGMEALNLLQQEPVDLAIVDVMMPKMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E+ + V+ +T + + KPF ++L+ V +L
Sbjct: 62 LTKNLVEIG--VPVLMLTAKTTLDDKEKGFLAGADDYMVKPFEPKELLFRVRAILRR 116
>gi|315646640|ref|ZP_07899757.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277966|gb|EFU41287.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M+ K+L+ ED++ +R F++ L + G++V+ +G A ++ P + L D+++P +
Sbjct: 1 MS-KVLILEDEESIRSFIVINLKRNGFDVLETGDGNEALRMLQTTPDIDIALLDVMVPGI 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ RR E + + ++F+T + + +SKPF +L+ + LL
Sbjct: 60 DGFEVCRRIRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARLQSLLR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|299138867|ref|ZP_07032044.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
gi|298599021|gb|EFI55182.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
Length = 227
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++R L + GYEV G + + + ++ D+++P + G E+
Sbjct: 4 ILVIEDDPRIQRALKRQFTAEGYEVHIEGEGPAGLTACKNMRPATVVLDLMLPGLSGREV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ PD V+ ++ + VA ++KPF R+L+ V +
Sbjct: 64 CKEIKAWSPDTPVIILSAISEVADKVLLLETGADDYVTKPFSPRELLARVQAAMRR 119
>gi|290352251|dbj|BAI78836.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L ++++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLNLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|240849737|ref|YP_002971125.1| transcriptional regulator BatR [Bartonella grahamii as4aup]
gi|240266860|gb|ACS50448.1| transcriptional regulator BatR [Bartonella grahamii as4aup]
Length = 240
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +GASA + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDRNILTSLSFALETEGYRVESYTDGASALKGLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + DL V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAILRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|227502103|ref|ZP_03932152.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|306836868|ref|ZP_07469824.1| response regulator [Corynebacterium accolens ATCC 49726]
gi|227077162|gb|EEI15125.1| response regulator [Corynebacterium accolens ATCC 49725]
gi|304567240|gb|EFM42849.1| response regulator [Corynebacterium accolens ATCC 49726]
Length = 234
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L +EV S N+G A RE + D++MP MDG E
Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQNFEVYSANSGNEALRVAREVNPDAYILDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D V+++T V ++KPF L +++ + ++
Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRR 124
>gi|291087886|ref|ZP_06572149.1| regulatory protein VanR [Clostridium sp. M62/1]
gi|291073605|gb|EFE10969.1| regulatory protein VanR [Clostridium sp. M62/1]
Length = 251
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++R+ + L GY V +G + +E L + DI+MP MDGI
Sbjct: 15 HILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVIEKEEIHLAIVDIMMPRMDGIT 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+F++ + ++KPF +L+ VN L
Sbjct: 75 MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 130
>gi|167587464|ref|ZP_02379852.1| two component transcriptional regulator, winged helix family
protein [Burkholderia ubonensis Bu]
Length = 233
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L AG+ + N A + + + L+L D ++P
Sbjct: 1 MPSNILVIEDEPAISELISVNLQHAGHCPIRAYNAEQAANLISDVLPDLVLLDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI AR E + ++ +T ++KPF ++L+ + +L
Sbjct: 61 GIAFARDLRNNERTKHIPIIMLTARGDEQDKVLGLEIGADDYVTKPFSPKELMARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|157363872|ref|YP_001470639.1| response regulator receiver protein [Thermotoga lettingae TMO]
gi|157314476|gb|ABV33575.1| response regulator receiver protein [Thermotoga lettingae TMO]
Length = 124
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + +R+ + L K GY V +G A +K+R+E L++ DI+MP +D
Sbjct: 1 MGYRVLVVDDSEVLRKIVSFNLIKEGYSVQEAKDGREALEKLRQEKPDLVILDIMMPYID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R E ++ V+ +T + + L+KPF L+ EV R++
Sbjct: 61 GFEVLRTMRKDENLKEIPVIMLTAKGGESDPKTALELGANSFLTKPFSPLKLLEEVRRVI 120
Query: 119 TI 120
Sbjct: 121 QR 122
>gi|115374136|ref|ZP_01461423.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
gi|310820905|ref|YP_003953263.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
gi|115368803|gb|EAU67751.1| sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
gi|309393977|gb|ADO71436.1| Sigma-54 activator protein ActB [Stigmatella aurantiaca DW4/3-1]
Length = 547
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++ +R FL + LG AGY+V +NGA A + + F +L D+VMPEM G+E+
Sbjct: 6 VLVVDDEESVRTFLGELLGGAGYQVRCASNGAQALEMLEGGSFDAVLLDVVMPEMSGLEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ ++ A + + L+KPF +L + + R L +
Sbjct: 66 LRRYRSSGGNAPVIVLSALAGADDAVRAMKMGASDYLAKPFGNDELEDVLARALGTR 122
>gi|163845631|ref|YP_001633675.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
gi|222523334|ref|YP_002567804.1| response regulator receiver modulated diguanylate cyclase
[Chloroflexus sp. Y-400-fl]
gi|163666920|gb|ABY33286.1| diguanylate cyclase [Chloroflexus aurantiacus J-10-fl]
gi|222447213|gb|ACM51479.1| response regulator receiver modulated diguanylate cyclase
[Chloroflexus sp. Y-400-fl]
Length = 313
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L A+DD +R L L +AG+ V++ +G S +E+ ++L D+++P +DG E
Sbjct: 9 TVLFADDDPHIRTLLSDTLTQAGFAVLAAEDGLSLIRIAQEQLPDIILVDLMLPGVDGYE 68
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L ++ +T A + ++KPF+ +LV + LL
Sbjct: 69 AIRQLRNDTRTAHLPIIIVTARANPSDVVIGFDTGADDYITKPFNEAELVARIRSLLRR 127
>gi|26989126|ref|NP_744551.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|148548500|ref|YP_001268602.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|24983960|gb|AAN68015.1|AE016434_6 DNA-binding response regulator OmpR [Pseudomonas putida KT2440]
gi|148512558|gb|ABQ79418.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 246
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|307591953|ref|YP_003899544.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
gi|306985598|gb|ADN17478.1| multi-sensor signal transduction histidine kinase [Cyanothece sp. PCC
7822]
Length = 1846
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ DMR++L + L + ++V + +G +A E+ L+L+D++MP +DG+EL
Sbjct: 1477 VLLVDDNADMRKYLTRILSEH-FQVEAVADGKTALAVAIEQVPDLILSDVMMPRLDGVEL 1535
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ A L KPF ++LV+ VN L +
Sbjct: 1536 LQALRSDPRTKEVPFILLSARAGEESIIKGLEAGADDYLIKPFSAQELVSRVNAHLQM 1593
>gi|295104695|emb|CBL02239.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 65/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +R + + L +GYEV +C +G +A + + E + L+L D+ +P++DG++
Sbjct: 2 RLLVVEDEHSLREDIARKLRLSGYEVDACADGEAALETLAAERYDLVLLDLNLPKVDGMQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + V+ ++ + ++ + LSKPFHL +L V L K
Sbjct: 62 VLRSLRQHDLETCVLILSARSEISDKVEGLDAGANDYLSKPFHLAELEARVRSLTRRK 119
>gi|295705391|ref|YP_003598466.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294803050|gb|ADF40116.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+DD+ MR+ + L GY V +G A + ++ L + DI+MP DG E
Sbjct: 3 HILLADDDEHMRQLVRHYLQLEGYVVHEAKDGEEASGLLAKQHIHLAVVDIMMPHKDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D ++ +T + ++KPF ++L+ + LL
Sbjct: 63 VCEEIRSYY-DFPIILLTAKDQLEDKEKGFLAGTDDYVTKPFEPKELIFRIKALLRR 118
>gi|291280089|ref|YP_003496924.1| hypothetical protein DEFDS_1712 [Deferribacter desulfuricans SSM1]
gi|290754791|dbj|BAI81168.1| conserved hypothetical protein [Deferribacter desulfuricans SSM1]
Length = 470
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 70/120 (58%), Gaps = 3/120 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ +IL+ +D+D +R L L YEVV +NG A + + E+ F ++TDI MP
Sbjct: 1 MSENKTRILIVDDEDYVRDSLKIILLAENYEVVDVDNGYRALELLNEKYFDFVITDIKMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
EMDGI L ++ E P++ V+ +TGF ++ + ++KPF + DL+N++++
Sbjct: 61 EMDGITLLKKIKEKYPEIPVIVMTGFPSIDNAIAALKEGAFDYVTKPFKVEDLINKLHKA 120
>gi|254503410|ref|ZP_05115561.1| response regulator receiver domain protein [Labrenzia alexandrii
DFL-11]
gi|222439481|gb|EEE46160.1| response regulator receiver domain protein [Labrenzia alexandrii
DFL-11]
Length = 246
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D D+R L + L K G +C N ++A ++ L++ DI+MP DG
Sbjct: 9 SPHILVVDDHRDIRETLARYLVKNGLRATACENASAARKALKAASIDLVVLDIMMPGEDG 68
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R E + V+ +T A ++KPF+ R+L+ + +L
Sbjct: 69 LSLCRHLVETGS-MPVILLTAMADDTDRVIGLEIGADDYVTKPFNPRELLARIRAVLRR 126
>gi|168212863|ref|ZP_02638488.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|170715642|gb|EDT27824.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D +E SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKEFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|126659636|ref|ZP_01730766.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
gi|126619082|gb|EAZ89821.1| hybrid sensory kinase [Cyanothece sp. CCY0110]
Length = 377
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GY+V NG +A + + + P L+L DI MP M+G E+
Sbjct: 8 ILVVDDTPDNLRLLSAMLSEQGYKVRKALNGKTALNTIHQVPADLILLDINMPSMNGYEV 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + D+ ++FI+ V + ++KPF +++ + LTI+
Sbjct: 68 CQQLKNDPITQDIPIIFISALDDVLDKVKAFDLGGVDYITKPFQAEEVIARIENQLTIQ 126
>gi|145589778|ref|YP_001156375.1| two component transcriptional regulator [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048184|gb|ABP34811.1| two component transcriptional regulator, winged helix family
[Polynucleobacter necessarius subsp. asymbioticus
QLW-P1DMWA-1]
Length = 237
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + + L AGY+V A ++++ ++++ D ++P
Sbjct: 1 MTHRILIVEDEPSIAELIAINLTHAGYKVEKAMQTDIASAMMKDQLPNMIILDWMLPGKS 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ A+ E L ++ +T + + ++KPF ++LV V +L
Sbjct: 61 GVQFAKELRSNERTKALPILMLTAKSEESDKVLGLDSGADDYVTKPFSPKELVARVRAML 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|319403541|emb|CBI77122.1| transcriptional regulator BatR [Bartonella rochalimae ATCC
BAA-1498]
Length = 240
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTLHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + DL V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|313499514|gb|ADR60880.1| OmpR_2 [Pseudomonas putida BIRD-1]
Length = 246
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|298370202|ref|ZP_06981518.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
str. F0314]
gi|298281662|gb|EFI23151.1| DNA-binding response regulator CreB [Neisseria sp. oral taxon 014
str. F0314]
Length = 226
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ + +L +A + A + E F LLL D+ +P+ +
Sbjct: 1 MNPHILIIEDEREIAELVELSLARAHFTARIAPTAEQARQLLAREHFDLLLLDVGLPDTE 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + P V+ +T + KPF R+LV V +L
Sbjct: 61 GFELLKTLRPQHPQ-PVIMLTAQDEETDRILGLELGADDYIGKPFSPRELVARVKAVLRR 119
>gi|298384579|ref|ZP_06994139.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 1_1_14]
gi|298262858|gb|EFI05722.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides sp. 1_1_14]
Length = 1350
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED++++ + K L K Y V+ +G A + +++ ++++D++MPEMDG+E
Sbjct: 1103 HLLLVEDNEELLFLMEKILSKH-YHVLIAKDGLEALNVIKDNEIDIIISDVMMPEMDGLE 1161
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLTI 120
R + ++ +T V + +SKPF L+ L +N ++
Sbjct: 1162 FCRTLKSNLETSHIPIILLTAKNTVEDRIECYNAGADGYISKPFELKILEARINNFIMHK 1221
Query: 121 KN 122
KN
Sbjct: 1222 KN 1223
>gi|288929443|ref|ZP_06423288.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 317 str. F0108]
gi|288329545|gb|EFC68131.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
sp. oral taxon 317 str. F0108]
Length = 963
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D+ F+ L Y ++ +NG +K + +++TD++MP +DG+E
Sbjct: 712 RVLVIDDNVDVAAFIGSQLSDK-YAIIYAHNGRDGLNKAEQMVPDVIVTDLMMPGVDGLE 770
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E+ + ++ +T A L+KPF+ +L V +LL +
Sbjct: 771 VCRRIRANEVTSHIPIIVVTAKITEADRVKGLEAGADAYLAKPFNRDELRMRVEKLLEQR 830
>gi|237722197|ref|ZP_04552678.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448007|gb|EEO53798.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1409
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L Y V+ NG A + P +++D++MP MDGIE
Sbjct: 1157 TILVVEDNVDMRGYIRSIL-HEHYNVLEAANGEEALHILNSNPVDFIISDLMMPVMDGIE 1215
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + + +T + +S + L KPF L+ + +L +
Sbjct: 1216 LSRRVKDAFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENR 1275
>gi|209525726|ref|ZP_03274263.1| multi-component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209493895|gb|EDZ94213.1| multi-component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 774
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD + + L K+L Y V +G S ++ + +SL++ DI++P+++GI
Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + V+ +T + L KP +L+ + LL
Sbjct: 62 LCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRR 118
Score = 96.0 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 2/107 (1%)
Query: 10 DDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRAT 69
DD + L L G EV + N + + LL+ D+ MP +GI+L +
Sbjct: 493 DDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGIDLCQVIR 552
Query: 70 E--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L ++ +T + +SKP +L+ +
Sbjct: 553 NEPRWRYLPILVLTNHTDPETRAELFRAGADDFISKPVVGPELIARL 599
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 9/128 (7%)
Query: 1 MNQK-------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD 53
M + +L+ + D + +I+ G E A + E S++L +
Sbjct: 353 MKKHPKTTVQSLLIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLE 412
Query: 54 IVMP--EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
+ P E DG+ L P++ V+ + ++ + L KP +V
Sbjct: 413 LNFPKPEEDGLMLLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIV 472
Query: 112 NEVNRLLT 119
V +L
Sbjct: 473 EIVTGILN 480
>gi|146307260|ref|YP_001187725.1| two component heavy metal response transcriptional regulator
[Pseudomonas mendocina ymp]
gi|330503403|ref|YP_004380272.1| two component heavy metal response transcriptional regulator
[Pseudomonas mendocina NK-01]
gi|145575461|gb|ABP84993.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas mendocina ymp]
gi|328917689|gb|AEB58520.1| two component heavy metal response transcriptional regulator
[Pseudomonas mendocina NK-01]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGTYLQQGLTEAGFNVDRVMTGTDALQHALSEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R D+ V+F+T V L KPF +L+ V LL N
Sbjct: 62 VLRMLRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120
>gi|5353563|gb|AAD42180.1|AF130997_1 response regulator [Enterococcus faecium]
gi|154267919|gb|ABS72054.1| response regulator [Ruminococcus gauvreauii]
Length = 232
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEVVARVKAQLR 117
>gi|30263158|ref|NP_845535.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47528519|ref|YP_019868.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49186004|ref|YP_029256.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|165869195|ref|ZP_02213855.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167632295|ref|ZP_02390622.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|167637425|ref|ZP_02395705.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|170705083|ref|ZP_02895548.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|177650226|ref|ZP_02933227.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190564881|ref|ZP_03017802.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227813979|ref|YP_002813988.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229603313|ref|YP_002867425.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
gi|254723170|ref|ZP_05184958.1| DNA-binding response regulator [Bacillus anthracis str. A1055]
gi|254738231|ref|ZP_05195934.1| DNA-binding response regulator [Bacillus anthracis str. Western
North America USA6153]
gi|254742601|ref|ZP_05200286.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B]
gi|254752546|ref|ZP_05204582.1| DNA-binding response regulator [Bacillus anthracis str. Vollum]
gi|254761062|ref|ZP_05213086.1| DNA-binding response regulator [Bacillus anthracis str. Australia
94]
gi|30257792|gb|AAP27021.1| DNA-binding response regulator [Bacillus anthracis str. Ames]
gi|47503667|gb|AAT32343.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames
Ancestor']
gi|49179931|gb|AAT55307.1| DNA-binding response regulator [Bacillus anthracis str. Sterne]
gi|164715921|gb|EDR21438.1| DNA-binding response regulator [Bacillus anthracis str. A0488]
gi|167514932|gb|EDR90298.1| DNA-binding response regulator [Bacillus anthracis str. A0193]
gi|167532593|gb|EDR95229.1| DNA-binding response regulator [Bacillus anthracis str. A0442]
gi|170129938|gb|EDS98800.1| DNA-binding response regulator [Bacillus anthracis str. A0389]
gi|172084178|gb|EDT69237.1| DNA-binding response regulator [Bacillus anthracis str. A0174]
gi|190564198|gb|EDV18162.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I]
gi|227002806|gb|ACP12549.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684]
gi|229267721|gb|ACQ49358.1| DNA-binding response regulator [Bacillus anthracis str. A0248]
Length = 224
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTSVLLLTAKDTIDDRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|116625337|ref|YP_827493.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116228499|gb|ABJ87208.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 230
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KI + ED+ ++ + L + GYE G + + L+L D+++P+ D
Sbjct: 1 MPKKIAIVEDEAELASLIEYNLTRHGYETQILGGGTGTMRALEQAKPDLILLDVMLPDAD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL R+ V+F+T + ++KPF R+L+ V L
Sbjct: 61 GFELCRQIRHSSALSRTPVLFLTARSDEVDRVLGLEIGGDDYMTKPFSPRELIARVKAHL 120
Query: 119 TIK 121
+
Sbjct: 121 RRE 123
>gi|237731448|ref|ZP_04561929.1| DNA-binding response regulator [Citrobacter sp. 30_2]
gi|226906987|gb|EEH92905.1| DNA-binding response regulator [Citrobacter sp. 30_2]
Length = 240
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 61/119 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI L EDD D+ L +L GYE+V +GA A +++ + + ++ D+++P +DG+
Sbjct: 5 KKIFLVEDDSDIASLLQLSLKDEGYEIVHEADGARALEQLEKHVWDAVILDLMLPGVDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR ++ L V+ I+ + L+KPF + +L+ V L +
Sbjct: 65 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 123
>gi|229541697|ref|ZP_04430757.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
gi|229326117|gb|EEN91792.1| two component transcriptional regulator, winged helix family
[Bacillus coagulans 36D1]
Length = 225
Score = 143 bits (363), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + + + L +EV + +G A ++ F ++L D+++PEMDG
Sbjct: 2 KLLIVEDNVSLLESMKRMLEDE-FEVETARDGEEALYLAQQNIFDIILLDVMLPEMDGFS 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+F+T ++ + KPF +L + L
Sbjct: 61 ILKTLRKDRVETPVLFVTAKDSLEDRVTGLEIGGDDYIVKPFQAAELKARIRASLRR 117
>gi|284992664|ref|YP_003411218.1| winged helix family two component transcriptional regulator
[Geodermatophilus obscurus DSM 43160]
gi|284065909|gb|ADB76847.1| two component transcriptional regulator, winged helix family
[Geodermatophilus obscurus DSM 43160]
Length = 238
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + L L + GYE ++G A ++ ++L D+++P +G++
Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T ++KPF +LV V L
Sbjct: 77 ICQDIRTQ-STVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR 132
>gi|168183919|ref|ZP_02618583.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237795806|ref|YP_002863358.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182672998|gb|EDT84959.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229263831|gb|ACQ54864.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 235
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE
Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 65 SMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120
>gi|88859915|ref|ZP_01134554.1| response regulator in two-component regulatory system with PhoQ
[Pseudoalteromonas tunicata D2]
gi|88817909|gb|EAR27725.1| response regulator in two-component regulatory system with PhoQ
[Pseudoalteromonas tunicata D2]
Length = 224
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L AL K Y V ++G S + E P L + D+ +P+M+GIE
Sbjct: 2 RILVIEDDLHLADNLRAALEKEKYSVDLAHDGESGLFHLTEYPLDLAVIDLGLPKMNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +RA +L ++ +T + L+KPFH +L+ N L+
Sbjct: 62 VIKRARAQQAELPILILTARDRWQDKVEGLDAGADDYLTKPFHPEELIARCNALIRR 118
>gi|332975405|gb|EGK12298.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)]
Length = 230
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ ED+ D+ + GYE+ + +NG S + E + ++L D+++P M+G
Sbjct: 2 HKILIIEDNPDIVANIYAFFEPKGYELDNAHNGPSGLSLLAENQYDVILLDVMLPGMNGT 61
Query: 63 ELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R E L V+ +T ++ L KPF L +L V LL
Sbjct: 62 ELCRTLREKLHIKTPVLMLTARDTISDKVAGFDSGANDYLVKPFSLVELEVRVKALLRR 120
>gi|226326489|ref|ZP_03802007.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
gi|225205088|gb|EEG87442.1| hypothetical protein PROPEN_00337 [Proteus penneri ATCC 35198]
Length = 235
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + LI L +GY+ +GA V+++ + L+L D+++P DGI +
Sbjct: 10 ILIVEDEPKLAQLLIDYLQSSGYQTYWLADGAEVCHCVKQQHYDLILLDLMLPVKDGITV 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + KP+ R++V V LL
Sbjct: 70 CKELRQ-FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124
>gi|298492568|ref|YP_003722745.1| winged helix family two component transcriptional regulator
['Nostoc azollae' 0708]
gi|298234486|gb|ADI65622.1| two component transcriptional regulator, winged helix family
['Nostoc azollae' 0708]
Length = 509
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +DD+ + L K L + Y V +G +A++ V + L+L D+++P++DGI
Sbjct: 2 RILLVDDDEIIVEVLTKLLVQQNYVVDVARDGEAAWELVEGFQYDLILLDVMLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + VM +T + KPF++++L V LT +
Sbjct: 62 FCRRLREQKSPVLVMLLTACDTTTDKLQGLDRGADDYVVKPFNVQELAARV-PALTRR 118
Score = 94.8 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD 60
N K+L +DD + + L G ++ N ++ V L+ DI MP +
Sbjct: 374 NAKVLAVDDDPQILLTVQTLLEPLGVQLTYLTNPDRFWETVPYNQPEFLILDIYMPSGTE 433
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++L R + D L ++F++ V + L+KP ++L+ ++ L
Sbjct: 434 GLDLCRAVGQNDDWNWLPILFLSSCTDVETLQKAFVIGADDYLTKPIVPKELLIRISNGL 493
Query: 119 TI 120
Sbjct: 494 QR 495
>gi|254471949|ref|ZP_05085350.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudovibrio sp. JE062]
gi|211959151|gb|EEA94350.1| phosphate regulon transcriptional regulatory protein PhoB
[Pseudovibrio sp. JE062]
Length = 231
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + L L GY V C G A ++E LLL D ++P + GIE
Sbjct: 3 KILIVEDEEPLSLLLRYNLEAEGYNVDVCARGDEAELLLQESQPDLLLLDWMLPGLSGIE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + ++ +T + A + KPF + +L+ V +
Sbjct: 63 LCRRLRARSETERMPIIMLTARGEESERIRGLATGADDYVVKPFSIPELMARVRAIFRR 121
>gi|297202340|ref|ZP_06919737.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197710140|gb|EDY54174.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 245
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ DI++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAIATRLRAEGFLVQTAVDGPSAVDTAEAWQPDLLILDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAARP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|146306940|ref|YP_001187405.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
gi|145575141|gb|ABP84673.1| integral membrane sensor hybrid histidine kinase [Pseudomonas
mendocina ymp]
Length = 787
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++LL ED+ + L K G +V+ +G A + + EP L+L D MP MDG
Sbjct: 663 SARVLLVEDNPVNQMVAKGMLAKLGCQVLVAGHGGEALEALEREPVDLVLMDCNMPVMDG 722
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E +RR P+L ++ +T A A L+KPF +L ++ L
Sbjct: 723 YEASRRIRANGRWPELPIVALTANALSDERERCRAAGMNDYLAKPFRREELAAMLDSWL 781
>gi|82779650|ref|YP_405999.1| DNA-binding response regulator CreB [Shigella dysenteriae Sd197]
gi|170021642|ref|YP_001726596.1| DNA-binding response regulator CreB [Escherichia coli ATCC 8739]
gi|253774972|ref|YP_003037803.1| DNA-binding response regulator CreB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164324|ref|YP_003047434.1| DNA-binding response regulator CreB [Escherichia coli B str.
REL606]
gi|293417871|ref|ZP_06660493.1| two-component system [Escherichia coli B185]
gi|297517068|ref|ZP_06935454.1| DNA-binding response regulator CreB [Escherichia coli OP50]
gi|300918114|ref|ZP_07134726.1| response regulator receiver domain protein [Escherichia coli MS
115-1]
gi|300930636|ref|ZP_07146025.1| response regulator receiver domain protein [Escherichia coli MS
187-1]
gi|300947478|ref|ZP_07161662.1| response regulator receiver domain protein [Escherichia coli MS
116-1]
gi|300955637|ref|ZP_07167992.1| response regulator receiver domain protein [Escherichia coli MS
175-1]
gi|309787378|ref|ZP_07681990.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
gi|81243798|gb|ABB64508.1| catabolic regulation response regulator [Shigella dysenteriae
Sd197]
gi|169756570|gb|ACA79269.1| two component transcriptional regulator, winged helix family
[Escherichia coli ATCC 8739]
gi|242379919|emb|CAQ34756.1| CreB transcriptional regulator [Escherichia coli BL21(DE3)]
gi|253326016|gb|ACT30618.1| two component transcriptional regulator, winged helix family
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253976227|gb|ACT41898.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli B str. REL606]
gi|253980384|gb|ACT46054.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli BL21(DE3)]
gi|291430589|gb|EFF03587.1| two-component system [Escherichia coli B185]
gi|300317474|gb|EFJ67258.1| response regulator receiver domain protein [Escherichia coli MS
175-1]
gi|300414698|gb|EFJ98008.1| response regulator receiver domain protein [Escherichia coli MS
115-1]
gi|300452912|gb|EFK16532.1| response regulator receiver domain protein [Escherichia coli MS
116-1]
gi|300461487|gb|EFK24980.1| response regulator receiver domain protein [Escherichia coli MS
187-1]
gi|308924956|gb|EFP70451.1| transcriptional regulatory protein creB [Shigella dysenteriae 1617]
gi|323939784|gb|EGB35986.1| response regulator receiver domain-containing protein [Escherichia
coli E482]
Length = 229
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|300866045|ref|ZP_07110777.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
gi|300335960|emb|CBN55935.1| adenylate/guanylate cyclase [Oscillatoria sp. PCC 6506]
Length = 352
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++ R L + L + G++V +G A + +R PF L+L DI+MP+M+G ++
Sbjct: 8 VLVVDDNEVNRDLLARRLQRQGHKVQVAEDGILALEMMRSHPFDLVLLDIMMPQMNGYQV 67
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
D + V+ I+ + LSKPF+ L ++ L K
Sbjct: 68 LEHLKADDKLRYIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPVLLKARISACLEKK 126
>gi|294631083|ref|ZP_06709643.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
gi|292834416|gb|EFF92765.1| DNA-binding response regulator MtrA [Streptomyces sp. e14]
Length = 225
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|260430574|ref|ZP_05784547.1| transcriptional activator protein CopR [Citreicella sp. SE45]
gi|260418603|gb|EEX11860.1| transcriptional activator protein CopR [Citreicella sp. SE45]
Length = 225
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAEDD + +++ L + G+ V ++G A L + D ++P MDG+
Sbjct: 2 KILLAEDDAKIADYIVAGLSENGHSVEHVSDGRDALSYCLYNDCDLAILDRMLPGMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + L V+F+T V + A L+KPFH +LV ++ ++ K+
Sbjct: 62 VLKALRASQKTLPVLFLTALGQVDDRVEGLAAGGDDYLTKPFHFSELVARIDAIVRRKS 120
>gi|302873819|ref|YP_003842452.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307689939|ref|ZP_07632385.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302576676|gb|ADL50688.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 218
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + + L AGYE +G A + ++EE F L+L DI++P MD
Sbjct: 1 MKINILIIEDEEAISNLIKINLTMAGYESRQVFDGLEALNLLKEESFDLILMDIMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL +R +L ++ V+F+T +A + + KPF +L+ + +L
Sbjct: 61 GFELMKRIKDL--NIPVIFLTAKNGLADKVNGLKAGAEDYIVKPFETVELLARIEVVLRR 118
>gi|257065604|ref|YP_003151860.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
gi|256797484|gb|ACV28139.1| two component transcriptional regulator, winged helix family
[Anaerococcus prevotii DSM 20548]
Length = 223
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + R L + L GY +G A D E + +++ DI +P+ DG E
Sbjct: 2 KVLIVEDERKLLRLLDEGLSLLGYVTDMARDGKEALDLAFVEDYDIIILDINLPKKDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + D ++ ++ +T + + ++KPF L++L + LL K+
Sbjct: 62 VLRDIRQFDKEVNIIMLTARSDIDDRVKGLDFGANDYMTKPFDLKELDARMRSLLRRKS 120
>gi|254511481|ref|ZP_05123548.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacteraceae bacterium KLH11]
gi|221535192|gb|EEE38180.1| phosphate regulon transcriptional regulatory protein PhoB
[Rhodobacteraceae bacterium KLH11]
Length = 229
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V +G A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDELAQREVLAYNLDAEGFRVSRAASGDEALLLVEEDRPDIIVLDWMMPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRRLKTRPDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVVELMARVRTQLRR 125
>gi|126651205|ref|ZP_01723415.1| two-component response regulator [Bacillus sp. B14905]
gi|126592043|gb|EAZ86109.1| two-component response regulator [Bacillus sp. B14905]
Length = 225
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD +R + L G +V+ +G A K+ E +++ DI+MP MDG
Sbjct: 3 KLLMVDDDAHIRELVKVFLQNEGLDVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + DL ++ +T A L KPF +L+ V +L
Sbjct: 63 LCEEIRSYNTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKR 119
>gi|120612957|ref|YP_972635.1| two component transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|120591421|gb|ABM34861.1| two component transcriptional regulator, winged helix family
[Acidovorax citrulli AAC00-1]
Length = 248
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 47/114 (41%), Gaps = 1/114 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L + G ++G A R+ ++L DI +P MDG++L
Sbjct: 14 VLVVEDEPGIATILSAYLQRDGLRARQAHDGLEALRLFRQLKPDMVLLDIHLPGMDGLDL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E V+ +T A + KPF ++V V +L
Sbjct: 74 LRAIREDG-QTPVIMVTALADDVDKLVGLRLGADDYVVKPFSPPEVVARVRAVL 126
>gi|220928356|ref|YP_002505265.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219998684|gb|ACL75285.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 231
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +DD+D+R + + GY+V ++G + ++ ++++L D++MP+MD
Sbjct: 2 MQKNMLVVDDDEDIREMIGTYFTREGYKVCFASDGKEGLELAKQNNYAIILLDVMMPQMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + L D V+ +T L KPF +L + +L
Sbjct: 62 GYTMLANLR-LFSDTPVILLTAKGEQMSKVKGFTKGCDDYLVKPFDFAELSLRIQAILKR 120
Query: 121 KN 122
N
Sbjct: 121 VN 122
>gi|15888624|ref|NP_354305.1| response regulator PleD [Agrobacterium tumefaciens str. C58]
gi|15156350|gb|AAK87090.1| two component response regulator [Agrobacterium tumefaciens str.
C58]
Length = 456
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + L L ++VV+ +G A EE ++L DI+MP MD
Sbjct: 1 MTARVLVVDDIPANVKLLEARLVAEYFDVVTAEDGFKALAICDEEQVDIILLDIMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + L+KP + L+ V L+
Sbjct: 61 GFEVCERLKANPNTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLIARVKSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 57.1 bits (138), Expect = 8e-07, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+ + +I+AL EV + +A K PF L++ + + D +
Sbjct: 156 RVLVADGRASSQERIIRALKPV-AEVDAVTEPQAALLKAASSPFELVIVNSNFEDYDPLR 214
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E L ++ + A + + + +P +LV + K
Sbjct: 215 LCSQFRSLERTRFLPLLLVAEQGADEMVARALDLGVNDYILRPIDPNELVARSLTQIRRK 274
>gi|121998680|ref|YP_001003467.1| response regulator receiver protein [Halorhodospira halophila SL1]
gi|121590085|gb|ABM62665.1| response regulator receiver protein [Halorhodospira halophila SL1]
Length = 125
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+Q+IL+ +D+D++ L + +AG+EV + +G A + + L+L D++MP D
Sbjct: 1 MSQEILIVDDEDNIVLSLEFLMKQAGFEVRTAQDGEQAIEALEARIPDLVLLDVMMPRKD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + + L V+ +T A ++KPF +++V V +L
Sbjct: 61 GYEVCQEIRQRSEWAHLPVVMLTAKGRDVEREKGLAMGADDYITKPFSTQEVVETVQHIL 120
>gi|302342499|ref|YP_003807028.1| two component transcriptional regulator, winged helix family
[Desulfarculus baarsii DSM 2075]
gi|301639112|gb|ADK84434.1| two component transcriptional regulator, winged helix family
[Desulfarculus baarsii DSM 2075]
Length = 227
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN IL+ ED+ D+ + L +AG+ V+ NG +E+ +LL+ D+++P +
Sbjct: 1 MNASTILVVEDEQDIIDLVEFNLRQAGFNVIKATNGLDGLRLAKEKKPALLVLDLMLPGL 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G E+ RR + + V+ +T A+ L+KPF R+LV V +
Sbjct: 61 EGQEVCRRLKQGDDTRRIPVLMLTALASETDRIVGFELGADDYLAKPFSPRELVLRVRAI 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRQ 124
>gi|237725777|ref|ZP_04556258.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435585|gb|EEO45662.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1386
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++++ +++ L Y ++ NG A + + ++ L+++D++MPEMDG+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + + + KP L L +++ LL +
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDRVEGYESGADGYICKPLRLSVLFAKIDNLLKRR 1254
>gi|254427529|ref|ZP_05041236.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
gi|196193698|gb|EDX88657.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
Length = 240
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ EDD+ + + L G +V ++G A ++R E L++ D+++P DG+ +
Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLDVTVVSDGEEAIRRIRAEQPDLVVLDLMLPGADGLTV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T ++KP R L+ + LL
Sbjct: 71 CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRR 125
>gi|158318231|ref|YP_001510739.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158113636|gb|ABW15833.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +D++ + L AL G+EV + +G A R+ ++ DI++P+MDG
Sbjct: 5 SPRILVVDDENTLSELLSMALRYEGWEVRTAQDGRGALRAARDFRPDAVVLDIMLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+E+ R+ P++ V+F+T AV ++KPF L +
Sbjct: 65 LEVLRKLRADSPEVPVLFLTARDAVEDRVAGLTAGGDDYVTKPFSLEE 112
>gi|153005480|ref|YP_001379805.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152029053|gb|ABS26821.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 532
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 53/116 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDDDD R L + L AGY V NG A +L D+V+PE DG E
Sbjct: 51 TVLVIEDDDDAREALCEFLATAGYRVRPLRNGVEALAAAANSRPDAVLLDLVIPEPDGFE 110
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ RR E DP + V+ ++ + + L KPF + +L + R L
Sbjct: 111 VLRRIRERDPRVPVIVMSALSQAEDVVRAMKLGANDYLPKPFDVSELNLVLRRALE 166
>gi|126178188|ref|YP_001046153.1| response regulator receiver sensor signal transduction histidine
kinase [Methanoculleus marisnigri JR1]
gi|125860982|gb|ABN56171.1| response regulator receiver sensor signal transduction histidine
kinase [Methanoculleus marisnigri JR1]
Length = 440
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED F+ L GY+V +G A ++ + ++LTDI+MP MD
Sbjct: 11 MS--VLVVEDSRTQAEFIRHVLETEGYDVTLVADGNEAIRRMEVDMPDIVLTDIMMPGMD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL RR + +PD V+ +T A A + KP + +++ ++
Sbjct: 69 GYELCRRIKQQNPDTPVILVTNLFDPADVLKGLASGADSFIVKPVDPEHVRSQIEAVMRT 128
Query: 121 K 121
+
Sbjct: 129 R 129
>gi|120403287|ref|YP_953116.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119956105|gb|ABM13110.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 255
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+E+ ++ A A DK R LL+ DI++P+MDG+
Sbjct: 31 RVLLVDDERALTNLVKMALQYEGWEIDVAHDAAEAVDKYRANTPDLLVLDIMLPDMDGLG 90
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E +F+T +VA ++KPF L +LV + LL
Sbjct: 91 VLARLRESGAYTPTLFLTARDSVADRVTGLTAGGDDYMTKPFSLEELVARLRGLLRR 147
>gi|117926464|ref|YP_867081.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
gi|117610220|gb|ABK45675.1| two component transcriptional regulator, winged helix family
[Magnetococcus sp. MC-1]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL +DD + L + L + G+ C++G A ++ + P+ L+ D+++P ++
Sbjct: 1 MN-TILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L R+ + ++ V+ +T + LSKP + R L + +L
Sbjct: 60 GFDLLRKLRQQT-EVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRR 118
>gi|315922180|ref|ZP_07918420.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313696055|gb|EFS32890.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1322
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+++ R+F+ + L + Y+V +NG A E+ ++++D++MP MDG
Sbjct: 1074 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1132
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R E + ++ +T L+KPF++ L N + LL +
Sbjct: 1133 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLAL 1192
Query: 121 K 121
+
Sbjct: 1193 Q 1193
>gi|312962726|ref|ZP_07777215.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311283101|gb|EFQ61693.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 225
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L LG+ G++V +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLTSWLGQEGFQVRACHDGLSARKALADSAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ P+L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRNDHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|300854564|ref|YP_003779548.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300434679|gb|ADK14446.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 238
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
++KILL +D+ ++ + L L K G+ + NG + E +++ DI+MP+MD
Sbjct: 7 DRKILLIDDEVELLKLLETVLKKEGFRRIFKAKNGTEGIKLCKTEKPDIVVLDIMMPDMD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + V+F++ + + ++KPF +++ + L
Sbjct: 67 GFEVCKNIRN-FSFVPVIFLSAKSDDVDKILALGLGADDYVTKPFSPKEVAFRIKAHLRR 125
>gi|302870597|ref|YP_003839234.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315506834|ref|YP_004085721.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|302573456|gb|ADL49658.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029]
gi|315413453|gb|ADU11570.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 227
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 45/116 (38%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L + G+ V +G + R + DI +P + G E+
Sbjct: 10 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGEAGLAAARRLRPVACVLDIALPGLAGTEI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+F+T ++KPF R+L+ + +L
Sbjct: 70 CRRLRAAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELLARLRAVLRR 125
>gi|260173915|ref|ZP_05760327.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one component system') [Bacteroides sp. D2]
Length = 1308
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+++ R+F+ + L + Y+V +NG A E+ ++++D++MP MDG
Sbjct: 1060 KTILIVEDNEEFRQFMYQQLSQE-YQVWEASNGEEAEAIANEKEVDIIVSDVMMPGMDGF 1118
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R E + ++ +T L+KPF++ L N + LL +
Sbjct: 1119 ELCLRLKENMKTSHIFIILLTARTGDENELAGYQSGADCYLTKPFNMDILKNRIQHLLAL 1178
Query: 121 K 121
+
Sbjct: 1179 Q 1179
>gi|239928972|ref|ZP_04685925.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291437309|ref|ZP_06576699.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291340204|gb|EFE67160.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 246
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA D LL+ D+++P DG+
Sbjct: 20 RRVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPSAVDTAEAWQPDLLILDVMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|229829584|ref|ZP_04455653.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
14600]
gi|229791573|gb|EEP27687.1| hypothetical protein GCWU000342_01681 [Shuttleworthia satelles DSM
14600]
Length = 237
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILLA+D+ ++R L L Y V+ N+G A D +++E L + D++MP+MD
Sbjct: 1 MEYTILLADDEAEIRELLRLYLDHESYRVLEANDGLEALDLLKKEHVDLCVLDVMMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + + ++ V+ ++ + LSKPF+ + V +N +
Sbjct: 61 GFCLLKEIRKK-SNMPVLMLSAKDGDSDKILGLNLGADDYLSKPFNPLEAVARINASIRR 119
>gi|255280222|ref|ZP_05344777.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
14469]
gi|255269313|gb|EET62518.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
14469]
Length = 225
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60
N K+L+ +D+ MR+ + L K + V+ +GA A D + +L++ D++MP+MD
Sbjct: 3 NLKVLVVDDESRMRKLVKDFLVKKDFTVLEAEDGAQAVDVFFSTKDIALVILDVMMPKMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + ++ ++ +T A + +SKPF + LV V +L
Sbjct: 63 GWQVCREIRGV-SNVPIIMLTARADERDELLGFELGVDEYISKPFSPKILVARVEAILRR 121
Query: 121 KN 122
N
Sbjct: 122 SN 123
>gi|16419611|gb|AAL20028.1| Copper resistance transcriptional regulatory protein [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|261246309|emb|CBG24118.1| response regulator [Salmonella enterica subsp. enterica serovar
Typhimurium str. D23580]
gi|301157639|emb|CBW17131.1| response regulator [Salmonella enterica subsp. enterica serovar
Typhimurium str. SL1344]
gi|332987989|gb|AEF06972.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|309388597|gb|ADO76477.1| two component transcriptional regulator, winged helix family
[Halanaerobium praevalens DSM 2228]
Length = 225
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD + + L +EV ++G +K+ +++ D+++P+ +G
Sbjct: 3 KKKILIIDDDLQITKILRDYFNYENFEVFVAHDGQKGLEKINNLEIDIIILDLMLPKKNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ R+ + + ++ ++ ++KPF ++LV V +L
Sbjct: 63 LDICRQLKPHNK-IPIIILSAKNRENDRIKGLELGADDYVTKPFSPKELVLRVKNVLKR 120
>gi|310643413|ref|YP_003948171.1| alkaline phosphatase synthesis transcriptional regulatory protein
phop [Paenibacillus polymyxa SC2]
gi|309248363|gb|ADO57930.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Paenibacillus polymyxa SC2]
Length = 236
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ +DD + + + + L K YEV S ++G + + +R L+ DI+MP +D
Sbjct: 1 MT-KIVVVDDDVFILQLISEYLKKESYEVTSFSSGKTLVEHIRTNRPDCLVLDIMMPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + E ++ ++ I+ + L+KPF+ R+LV V +L +
Sbjct: 60 GLSLLTQLREFT-EMPIIMISARGEENDRIHGLELGCSDFLTKPFNPRELVGRVKAMLRL 118
>gi|303257073|ref|ZP_07343087.1| transcriptional regulatory protein OmpR [Burkholderiales bacterium
1_1_47]
gi|302860564|gb|EFL83641.1| transcriptional regulatory protein OmpR [Burkholderiales bacterium
1_1_47]
Length = 237
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 46/114 (40%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+DD +R L + L G+ V N E F ++ D++MP DGI + +R
Sbjct: 2 VDDDSRLRDLLRQFLTNNGFHVSVAENAEQMNRLWLRERFDAVVLDVMMPGEDGISILKR 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T L KP++ R+L+ ++ +L +
Sbjct: 62 IRASNDTTPILMLTAKGEDIDRILGLELGADDYLPKPYNPRELLARLHAILRRR 115
>gi|291531321|emb|CBK96906.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium siraeum
70/3]
Length = 227
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L AED+ M + L Y V + +GA A D R E + ++ DI+MP+ G+E
Sbjct: 2 KLLFAEDEVSMAEAVTDILTYHNYTVDTVYDGADALDYARAEQYDGIILDIMMPKKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T A V L KPF + +L++ V +L K+
Sbjct: 62 VLKTLRSEGNTTPILLLTAKAEVEDRIAGLDMGADDYLPKPFVMGELLSRVRAMLRRKD 120
>gi|197105366|ref|YP_002130743.1| response regulator(with CheY-like receiver domain and winged-helix
DNA-binding domain) [Phenylobacterium zucineum HLK1]
gi|196478786|gb|ACG78314.1| response regulator(with CheY-like receiver domain and winged-helix
DNA-binding domain) [Phenylobacterium zucineum HLK1]
Length = 249
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + LG+ GY+V + + + P L++ D+++P DG+
Sbjct: 17 RILMVDDDPGIRDVVSDFLGRHGYKVETAADAPEMERVLERGPVDLIVLDVMLPGEDGLA 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR T D ++ ++ L+KP + R+L+ V +L
Sbjct: 77 ICRRLTTADNAPPIIMLSAMGEDTDRIVGLELGADDYLAKPCNPRELLARVRAVLRR 133
>gi|104781516|ref|YP_608014.1| two-component response regulator [Pseudomonas entomophila L48]
gi|95110503|emb|CAK15211.1| putative two-component response regulator [Pseudomonas entomophila
L48]
Length = 246
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILVVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLENNTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|120401218|ref|YP_951047.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954036|gb|ABM11041.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 244
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD D+R + + L +G++V G A + E L+ D+ MPE+DG+
Sbjct: 19 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGV 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L D+ + ++ V L+KPF L +LV ++ LL +
Sbjct: 79 AVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAH 138
>gi|258510266|ref|YP_003183700.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|50830978|emb|CAG29816.1| putative response regulator transcription factor kdpE
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|257476992|gb|ACV57311.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 232
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KIL+ +D+ + + + AL GYEV+ ++G A + L + D +P+M
Sbjct: 1 MSGAKILVVDDERAILKLMQIALKGHGYEVLEASSGEEALVVASTKRPDLAVIDWGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GIE+ RR E + V+ +T A + + KPF + +L+ + L
Sbjct: 61 EGIEVLRRLRE-WSQMPVIMLTVRDAEEDKIAALDAGADDYVVKPFGMGELLARIRVALR 119
>gi|38232907|ref|NP_938674.1| two-component regulatory protein [Corynebacterium diphtheriae NCTC
13129]
gi|38199165|emb|CAE48790.1| two-component regulatory protein [Corynebacterium diphtheriae]
Length = 233
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ M + + AL G+EV+S ++ + + E L++ D+++P+
Sbjct: 1 MHRLRVLVVDDEPQMVQIISYALELEGWEVLSASSAQRGWQLLNEYRCDLVILDVMLPDA 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G L R V+ +T + ++KPF ++LV +
Sbjct: 61 SGYALCERIRAAGDVAGTPVIMLTALGDTDNRVEGLEAGADDYVAKPFSPKELVLRAQAV 120
Query: 118 LTI 120
+
Sbjct: 121 VRR 123
>gi|296168092|ref|ZP_06850158.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896899|gb|EFG76527.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 227
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGQAALAEFDRGGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|228941849|ref|ZP_04104396.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228974774|ref|ZP_04135340.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981369|ref|ZP_04141669.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
gi|228778569|gb|EEM26836.1| hypothetical protein bthur0002_45300 [Bacillus thuringiensis Bt407]
gi|228785177|gb|EEM33190.1| hypothetical protein bthur0003_45270 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228818061|gb|EEM64139.1| hypothetical protein bthur0008_44850 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|326942455|gb|AEA18351.1| two-component response regulator [Bacillus thuringiensis serovar
chinensis CT-43]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEEYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|227498819|ref|ZP_03928959.1| DNA-binding response regulator [Acidaminococcus sp. D21]
gi|226904271|gb|EEH90189.1| DNA-binding response regulator [Acidaminococcus sp. D21]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ EDD + L G+EV G S P L+L DI++P DG
Sbjct: 2 KKVLIIEDDKGIAELERDYLEANGFEVQMAFTGLSGKKAALSSPVDLILLDIMLPGEDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R D+ ++ ++ + KPF +LV V ++
Sbjct: 62 QVCREIRAE-KDIPILMVSARQEDIDKIRGLGLGADDYIVKPFSPTELVARVKSHISR 118
>gi|224026726|ref|ZP_03645092.1| hypothetical protein BACCOPRO_03483 [Bacteroides coprophilus DSM
18228]
gi|224019962|gb|EEF77960.1| hypothetical protein BACCOPRO_03483 [Bacteroides coprophilus DSM
18228]
Length = 232
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY C +G + Y + + + + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELCPDGEAGYKAFLKNKYDMCVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFALAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|207856439|ref|YP_002243090.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224584398|ref|YP_002638196.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|206708242|emb|CAR32542.1| response regulator [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|224468925|gb|ACN46755.1| copper resistance protein [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|170758276|ref|YP_001787361.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169405265|gb|ACA53676.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 221
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ EDD D+ + + L ++GY V +G A + R F L++ D+++P++D
Sbjct: 1 MPKRILVVEDDFDIHTIISEVLKESGYLVEVATDGLIAVEMFRRGEFDLIILDVMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T K + KPF + L+ V +L
Sbjct: 61 GFVVCEIIRKE-SSMPIIMLTALGEEEDEMKGFELKVDDYIIKPFSINLLIKRVEAVLRR 119
Query: 121 KN 122
N
Sbjct: 120 AN 121
>gi|90418271|ref|ZP_01226183.1| response regulator receiver, transcriptional regulatory protein
[Aurantimonas manganoxydans SI85-9A1]
gi|90337943|gb|EAS51594.1| response regulator receiver, transcriptional regulatory protein
[Aurantimonas manganoxydans SI85-9A1]
Length = 246
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L++ L + + V + A A + F LL+ D++MP GIE
Sbjct: 26 HILVIDDDRRIRSLLLRFLSEQQFRVSVAADAAEARRILEGLDFDLLVVDVMMPGESGIE 85
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T + + L+KPF R+L+ VN +L
Sbjct: 86 LVRSLR-TNRQAPVLMLTARSETEHRIEGLEAGADDYLAKPFDPRELLLRVNNILRR 141
>gi|150016986|ref|YP_001309240.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903451|gb|ABR34284.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 234
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + L GY V +NG + + + L + DI+MP+MDGI +
Sbjct: 6 VLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGITM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D V+ +T + ++KPF+ +L+ VN L
Sbjct: 66 VMKLRENY-DFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120
>gi|328884621|emb|CCA57860.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 228
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLQLLREQRPDLVVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|313206636|ref|YP_004045813.1| two component transcriptional regulator, winged helix family
[Riemerella anatipestifer DSM 15868]
gi|312445952|gb|ADQ82307.1| two component transcriptional regulator, winged helix family
[Riemerella anatipestifer DSM 15868]
gi|315022132|gb|EFT35161.1| two-component system, transcriptional regulatory protein
[Riemerella anatipestifer RA-YM]
gi|325335923|gb|ADZ12197.1| two component transcriptional regulator, winged helix family
[Riemerella anatipestifer RA-GD]
Length = 228
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD L L +EV +G + F + + D++MP+ D
Sbjct: 1 MSNRILLVEDDQSFGAVLKDYLSINNFEVTLATDGEEGLKEYTNNDFDICIFDVMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LA +L ++ ++F+T ++KPF L+ ++ +L+
Sbjct: 61 GFTLAEDVKKLGKNIPIIFLTARNLREDILKGYQLGADDYITKPFDTELLLYKIKAILSR 120
>gi|160902340|ref|YP_001567921.1| two component transcriptional regulator [Petrotoga mobilis SJ95]
gi|160359984|gb|ABX31598.1| two component transcriptional regulator, winged helix family
[Petrotoga mobilis SJ95]
Length = 242
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE- 58
M +K I++ EDD + L L K GYEV++ + A K+ E+ + DI++P
Sbjct: 1 MAKKSIMIVEDDPAISEMLSLNLTKEGYEVITAVSADEALKKLEEKDTDFFIVDIMLPGS 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG +L R E + V+ ++ A + ++KPF++R+L+ +
Sbjct: 61 MDGFDLIRILKSSEDYRNTPVLILSAKDDAADKVAGLELGSDDYVTKPFNVRELIARIKS 120
Query: 117 LLTIK 121
+ +
Sbjct: 121 IFRRQ 125
>gi|148825917|ref|YP_001290670.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittEE]
gi|319776338|ref|YP_004138826.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Haemophilus influenzae F3047]
gi|329123490|ref|ZP_08252054.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
11116]
gi|148716077|gb|ABQ98287.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittEE]
gi|301170132|emb|CBW29736.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Haemophilus influenzae 10810]
gi|309973064|gb|ADO96265.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
influenzae R2846]
gi|317450929|emb|CBY87155.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Haemophilus influenzae F3047]
gi|327471072|gb|EGF16527.1| phosphate regulon response regulator [Haemophilus aegyptius ATCC
11116]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ +R + L + Y+V+ ++ +A +K++E L+L D ++P
Sbjct: 1 MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + + ++ +T + ++KPF + L+ + +
Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|163849322|ref|YP_001637366.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222527316|ref|YP_002571787.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
gi|163670611|gb|ABY36977.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|222451195|gb|ACM55461.1| response regulator receiver protein [Chloroflexus sp. Y-400-fl]
Length = 390
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +L+ +DDD + L L AGYEV +G A ++ + L+ D+++P +
Sbjct: 1 MKPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG L +R + L L ++ +T ++ L+KPF ++LV V +
Sbjct: 61 DGYTLCKRVRQHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNI 120
Query: 118 LTI 120
L
Sbjct: 121 LAR 123
>gi|327404293|ref|YP_004345131.1| winged helix family two component transcriptional regulator
[Fluviicola taffensis DSM 16823]
gi|327319801|gb|AEA44293.1| two component transcriptional regulator, winged helix family
[Fluviicola taffensis DSM 16823]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q ILL +D+ D+ FL L + GY+V ++G + ++ L+L D++MP MDGI
Sbjct: 7 QTILLVDDEKDILEFLQYNLEREGYKVFVASDGLEGVEMAQKVSPDLILMDVMMPRMDGI 66
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + + + F+T A ++KP R LV++V LL
Sbjct: 67 EACQTIRQDLQLKSPLIAFLTSRAEDYSQVAGFEAGADDYITKPIRPRLLVSKVEALLRR 126
>gi|313898964|ref|ZP_07832491.1| response regulator MprA [Clostridium sp. HGF2]
gi|312956163|gb|EFR37804.1| response regulator MprA [Clostridium sp. HGF2]
Length = 242
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L AED+ D+ + + L K GY V +C +GA A + + + ++ DI+MP MDG
Sbjct: 20 RLLFAEDERDLNEIVCQKLRKEGYTVDACFDGAEALEFLAVADYDAVILDIMMPVMDGYA 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F++ ++ L KPF +L+ + ++ +
Sbjct: 80 VLKQLRAEGRMTPVLFLSARDSIEDRVLGLDSGANDYLIKPFSFAELMARIRTMIRL 136
>gi|289435683|ref|YP_003465555.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289171927|emb|CBH28473.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|313632083|gb|EFR99179.1| regulatory protein VanR [Listeria seeligeri FSL N1-067]
gi|313636469|gb|EFS02215.1| regulatory protein VanR [Listeria seeligeri FSL S4-171]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYLAYDGAEVWRLVQEKQPTLVILDIMMPEMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRSEGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|261867820|ref|YP_003255742.1| transcriptional regulatory protein QseB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261413152|gb|ACX82523.1| transcriptional regulatory protein QseB [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 223
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L K+G+ V +G + + + P+ ++ D+ +P+MDG++
Sbjct: 2 RILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKTGLEAAQSAPYDAVVLDLTLPKMDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D+ V+ +T + L KPF L ++V + L+ +
Sbjct: 62 VLQAWRKNGQDVPVLILTARDTLDERITGLQRGADDYLCKPFALAEVVARLQALIRRR 119
>gi|206602093|gb|EDZ38575.1| Putative two component transcriptional regulator, winged helix
family [Leptospirillum sp. Group II '5-way CG']
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D+ L + +EV + NG R L++ D+++P +D
Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + R + L + V+ +T + + KPF+ ++L+ + +L
Sbjct: 61 GLSINRSLKKDPLTSGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|254411506|ref|ZP_05025283.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196182007|gb|EDX76994.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 419
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL +DD ++ L + L G++V+ ++G +A K +E L++ D +MP++DG+E
Sbjct: 3 KILAVDDDITVQIILQELLESEGHDVLLADDGEAALQKTQEFQPDLIICDWMMPKLDGLE 62
Query: 64 LARRATELDPDLKVMFI---TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR DP L +F+ T VA LSKP +L V L +
Sbjct: 63 LCRRIKA-DPQLATIFLILITIREQVADRVQGLDSGADDFLSKPIEPSELQARVRSGLRL 121
Query: 121 K 121
+
Sbjct: 122 R 122
>gi|146342589|ref|YP_001207637.1| sensor histidine kinase [Bradyrhizobium sp. ORS278]
gi|146195395|emb|CAL79420.1| putative sensor histidine kinase with multiple PAS/PAC and a
response regulator receiver domain [Bradyrhizobium sp.
ORS278]
Length = 1231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR ++ + L Y+V + +G +A + + L+L+D++MP++DG++
Sbjct: 642 RILLADDNADMRDYVRRLLVTR-YDVEAVADGKAALEAIARAKPDLVLSDVMMPQLDGMQ 700
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ ++ A + L KPF R+L+ V L +
Sbjct: 701 LLARVRADAQFSTVPVILLSARAGEESRVEGMQAGADDYLIKPFSARELLARVEAHLKM 759
>gi|30720162|gb|AAN87039.1| OmpR [Thiocapsa roseopersicina]
Length = 238
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R L L G+ V +G + + E L++ D+++P DG+ L
Sbjct: 8 ILVVDDDSALRALLGDYLAGEGFLVAGAEDGVAMDAWLAEHETDLVILDLMLPGEDGLTL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
ARR D ++ ++ + KPF+ R+L+ + +L +
Sbjct: 68 ARRLRAR-ADTPIIMLSARGDDIDRIVGLEVGADDYMPKPFNPRELLARIRAVLRRR 123
>gi|148545276|ref|YP_001265378.1| two component heavy metal response transcriptional regulator
[Pseudomonas putida F1]
gi|167031040|ref|YP_001666271.1| two component heavy metal response transcriptional regulator
[Pseudomonas putida GB-1]
gi|170719204|ref|YP_001746892.1| two component heavy metal response transcriptional regulator
[Pseudomonas putida W619]
gi|148509334|gb|ABQ76194.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas putida F1]
gi|166857528|gb|ABY95935.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas putida GB-1]
gi|169757207|gb|ACA70523.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas putida W619]
Length = 225
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ + +L + L +AG+ V G A E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKIGAYLQQGLTEAGFTVDRVVTGTDALQYALSEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+F+T V L KPF +L+ V LL
Sbjct: 62 VLRMVRAAGKEVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|116751092|ref|YP_847779.1| two component transcriptional regulator [Syntrophobacter
fumaroxidans MPOB]
gi|116700156|gb|ABK19344.1| two component transcriptional regulator, winged helix family
[Syntrophobacter fumaroxidans MPOB]
Length = 263
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ EDD + FL +AL +AG+++ NG ++ +E + ++ D+++P MDG
Sbjct: 31 SMRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMDG 90
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ ++ V+ ++ +V+ L+KPF L +L+ V L+
Sbjct: 91 LEILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPFELAELLARVWSLIRR 149
>gi|333029253|ref|ZP_08457314.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
gi|332739850|gb|EGJ70332.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
Length = 232
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAADLFPDGEEGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ ++ ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAVNAEIPIIFLTAKTLKDDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229591602|ref|YP_002873721.1| response regulatory protein [Pseudomonas fluorescens SBW25]
gi|229363468|emb|CAY50681.1| response regulatory protein [Pseudomonas fluorescens SBW25]
Length = 223
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ +L+ L + GY V +G + E PF +++ D++MP+MD
Sbjct: 1 MN--ILVVEDEPKAGNYLLNGLQELGYSVSLARDGVDGLHQALETPFDVIVLDVMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + D V+F+T +A L KPF +LV + L
Sbjct: 59 GWEVLRRLRKE-ADTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117
>gi|150388543|ref|YP_001318592.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149948405|gb|ABR46933.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 240
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + L K+ + G++V +G A F ++ D+++P++DGI
Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + D+ ++ +T ++KPF+ R+L+ + L+ +
Sbjct: 78 LCNRIRQQ-SDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQ 134
>gi|197116683|ref|YP_002137110.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197086043|gb|ACH37314.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 456
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KI++ +D+ +R L + L K GYEVV+ G A REE L+L D +P +
Sbjct: 1 MRKIKIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLAREEQPDLVLLDYHLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+E+ +R ELD D+ V+ +T + ++ ++KPF+L ++ + + L
Sbjct: 61 NGLEVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALE 120
>gi|17229772|ref|NP_486320.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17131371|dbj|BAB73979.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 421
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L +AL + GYEV+ NG ++ + +L++ D M EMDG+E
Sbjct: 37 KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHHPALIICDWQMDEMDGLE 96
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + +T AV + LSKP + +L V L +
Sbjct: 97 VCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPIDVNELKARVRSGLRL 155
>gi|145221065|ref|YP_001131743.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315441964|ref|YP_004074843.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|145213551|gb|ABP42955.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
gi|315260267|gb|ADT97008.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD D+R + + L +G++V G A + E L+ D+ MPE+DG+
Sbjct: 23 RTVLMVDDDPDVRTSVARGLRHSGFDVRVAATGKEALRLLSSESHDALVLDVQMPELDGV 82
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L D+ + ++ V L+KPF L +LV ++ LL +
Sbjct: 83 AVVTALRALGNDIPICVLSARDTVNDRIAGLEAGADDYLTKPFDLGELVARLHALLRRAH 142
>gi|332974230|gb|EGK11163.1| DNA-binding response regulator [Kingella kingae ATCC 23330]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ ED+ ++ + +L +AG++V ++ +A + + ++ LLL D ++P+
Sbjct: 1 MNKTRILVVEDEMPIQTLIAFSLQQAGFDVQCASHVQAARELIAQQRHDLLLLDWMLPDG 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L ++ +T + A A L+KPF R+L+ ++
Sbjct: 61 DGVSWIAELRAQPATAALPIILLTARSEDADKEHGFAQGADDYLTKPFSPRELIARIHAR 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRHR 124
>gi|312891526|ref|ZP_07751040.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311295989|gb|EFQ73144.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 226
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +I L ED+ + F+ L + Y V +GA + + + LL+ DI++P +
Sbjct: 1 MN-RICLIEDEHKVAAFIKNGLEEHEYLVNVATDGARGIELIENNNYDLLILDIMLPVVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + +P + ++ +T AV L KPFH +L+ + LL
Sbjct: 60 GIDVCKHVRATNPHIPILMLTALGAVDDKVAGLKAGADDYLVKPFHFIELLARIEALLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|326772524|ref|ZP_08231808.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces viscosus C505]
gi|326637156|gb|EGE38058.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces viscosus C505]
Length = 242
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +LL +D+ +RR L L + GY V+ ++GA A D + ++++D++MP MDG
Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERGGYRVLLASDGAEAMDILASYQVDIIVSDVLMPRMDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR ++ +T A + LSKPF +L + + +L
Sbjct: 70 RELVRRVRAGGAWTPIILLTQVDASYERVSALDDGADDYLSKPFDPAELASRIRAVLRR 128
>gi|284051075|ref|ZP_06381285.1| multi-component transcriptional regulator [Arthrospira platensis
str. Paraca]
Length = 587
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD + + L K+L Y V +G S ++ + +SL++ DI++P+++GI
Sbjct: 2 KILLVDDDQYLNQQLSKSLKAHNYVVDIATDGESGWNYIESFEYSLVILDIMLPKLNGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + V+ +T + L KP +L+ + LL
Sbjct: 62 LCRKLRSHNYQMPVLLLTARDSCEDKVLGLDAGADDYLVKPIRAEELIARMRALLRR 118
Score = 82.9 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 2/101 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+ DD + L L G EV + N + + LL+ D+ MP +GI+
Sbjct: 487 KIIAINDDPQILELLEALLCPLGLEVKTLNTPRKFWQVLEISNPDLLIIDVEMPHYNGID 546
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLS 102
L + L ++ +T + +S
Sbjct: 547 LCQVIRNEPRWRYLPILVLTNHTDPETRAELFRAGADDFIS 587
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP--EMDGIE 63
L+ + D + +I+ G E A + E S++L ++ P E DG+
Sbjct: 365 LIVDHDTILGEQIIREAHSRGLEARLAPGVGIARAMMVEYQPSIILLELNFPKPEEDGLM 424
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L P++ V+ + ++ + L KP ++ V +L N
Sbjct: 425 LLEDIAYHHPEIPVVIFSRRSSFIDRLTVCRLGSRAFLQKPMSSHQIMEIVTGILNHHN 483
>gi|256848291|ref|ZP_05553734.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
gi|256714889|gb|EEU29867.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
Length = 222
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + R L A+ AGY V NG A D ++ + +++ DI+MP G+E
Sbjct: 2 RILLAEDEAQLSRVLTMAMTNAGYHVDHAENGQRAVDLAKDNAYDVMIFDIMMPVKTGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ VM +T + V ++KPF L++L+ + L +N
Sbjct: 62 ALKEIRATGDRTYVMMLTAMSEVDDKVTGLDAGADDYMTKPFSLKELLARLRS-LERRN 119
>gi|213963659|ref|ZP_03391910.1| DNA-binding response regulator RprY [Capnocytophaga sputigena
Capno]
gi|213953654|gb|EEB64985.1| DNA-binding response regulator RprY [Capnocytophaga sputigena
Capno]
Length = 249
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++ILL ED + L L +G++V NG ++ ++E F + + D++MP DG
Sbjct: 14 DKRILLVEDAPNFGTVLKDYLVMSGFDVTLAKNGMEGFELFKKEIFDMCILDVMMPYKDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR E + + ++F+T L+KPF L+ ++ +L K
Sbjct: 74 FTLAREIREKNEKIPIIFLTARTMREDVIKGYKSGGDDYLNKPFDSEILLMKIRSMLQRK 133
Query: 122 N 122
N
Sbjct: 134 N 134
>gi|152985847|ref|YP_001347317.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
gi|150961005|gb|ABR83030.1| two-component response regulator GltR [Pseudomonas aeruginosa PA7]
Length = 242
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++R L L +AG++V S + GA + EE L + D+++P+ DG L
Sbjct: 8 ILLVDDDQEIRELLETYLSRAGFQVRSVSRGADFRQALCEEEAILAILDVMLPDEDGFSL 67
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T + A L KPF R+L+ + LL
Sbjct: 68 CRWIRSHQRLACMPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELLARIKALLRR 125
>gi|56478486|ref|YP_160075.1| sigma-54 dependent DNA-binding response regulator [Aromatoleum
aromaticum EbN1]
gi|56314529|emb|CAI09174.1| Sigma-54 dependent DNA-binding response regulator [Aromatoleum
aromaticum EbN1]
Length = 464
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 64/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ R+ L LG+AGY + +G +A + + L L DI MP +D
Sbjct: 1 MNRHILIVDDEALYRQLLTSRLGRAGYRLSEAADGEAALECAQHGGIDLALVDIKMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +R ELDP ++V+ +TG V + LSKP+ L +L V R L
Sbjct: 61 GIEVLKRLKELDPLIEVVILTGHGNVDTAISAMKLGAFDYLSKPYKLTELDIVVERALEK 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|331083007|ref|ZP_08332126.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330399744|gb|EGG79405.1| hypothetical protein HMPREF0992_01050 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 235
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVM 56
M Q +L+ +DD ++ + K + + V+ +G ++E FSL++ D++M
Sbjct: 1 MKQ-VLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMM 59
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG ++ ++ E+ ++ V+ +T + L+KPF + +L V+
Sbjct: 60 PYMDGFQVLKKIREV-SNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHS 118
Query: 117 LLTI 120
L+
Sbjct: 119 LIRR 122
>gi|317475679|ref|ZP_07934939.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
gi|316908135|gb|EFV29829.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
Length = 1354
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++R +L L + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-I 120
L + + + V+ ++ + + + KPF + + +++ ++
Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRTR 1223
Query: 121 KN 122
++
Sbjct: 1224 RH 1225
>gi|302521900|ref|ZP_07274242.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302430795|gb|EFL02611.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 267
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA + LL+ D+++P DG+
Sbjct: 41 RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 100
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R++ V+ LL
Sbjct: 101 EVCRRVQAHRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 157
>gi|262279093|ref|ZP_06056878.1| AdeR [Acinetobacter calcoaceticus RUH2202]
gi|262259444|gb|EEY78177.1| AdeR [Acinetobacter calcoaceticus RUH2202]
Length = 243
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L + G VV NG A + +P L++ DI MPE++G E+
Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHATQPIDLVILDIKMPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|255527565|ref|ZP_05394430.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255508731|gb|EET85106.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 367
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ + F+ L G+ + + +G A +E S+++ DI++P ++G E
Sbjct: 149 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 208
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + ++ +T + + KPF ++L+ +N L
Sbjct: 209 VCSEIKK-WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 263
>gi|218128498|ref|ZP_03457302.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
gi|217989389|gb|EEC55702.1| hypothetical protein BACEGG_00068 [Bacteroides eggerthii DSM 20697]
Length = 1354
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++R +L L + + NG A +K+++ +++TD++MP MDGI+
Sbjct: 1105 TILIVEDNQEIRHYLCSGLADL-FNTLEAGNGEEALEKLKDNEVDIIITDVMMPVMDGIK 1163
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT-I 120
L + + + V+ ++ + + + KPF + + +++ ++
Sbjct: 1164 LCKNVKQNIRTCHIPVIILSAKTDIKDQLEGLQVGADDYIPKPFAIAVITSKIQNMMRTR 1223
Query: 121 KN 122
++
Sbjct: 1224 RH 1225
>gi|38233005|ref|NP_938772.1| putative two component system response regulator [Corynebacterium
diphtheriae NCTC 13129]
gi|38199264|emb|CAE48895.1| Putative two component system response regulator [Corynebacterium
diphtheriae]
Length = 226
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED++ + L L K G++VV +G SA + ++L D+++P M G ++
Sbjct: 4 ILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKRLRAV-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|37523697|ref|NP_927074.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35214702|dbj|BAC92069.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 234
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61
Q +L+ +D + +R + ALG+ GY VV +G A D VR + L++ D+++P ++G
Sbjct: 8 QTVLVVDDAELIRETVGMALGEEGYSVVLAEDGRQALDLVRNSDKVDLIVLDLMLPHLNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++L R + ++ +T L KPF +R+L+ +L
Sbjct: 68 LDLCRLLRREGNAVPILMLTAKGTETDRVVGLEVGADDYLPKPFGMRELIARCRAVLRR 126
>gi|148548249|ref|YP_001268351.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148512307|gb|ABQ79167.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 220
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G S ++ E F LL+ D+ +P MDGIE
Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLLILDLGLPRMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A+ L KPF L +L + LL
Sbjct: 62 LLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|312960966|ref|ZP_07775471.1| two-component response regulator [Pseudomonas fluorescens WH6]
gi|311284624|gb|EFQ63200.1| two-component response regulator [Pseudomonas fluorescens WH6]
Length = 413
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +R+ L L GY+ S ++G A V ++P L+L D++MP MDG E
Sbjct: 7 TLLIVDDEPQVRKLLETLLQHEGYQTRSASSGEEALTLVAQQPPDLILLDVMMPGMDGFE 66
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A R ++ ++ ++ + ++KP +L V LL +K
Sbjct: 67 VANRLKSNPATSNIPIIMLSALNEPGARVSGLHTGAEEFINKPVEHIELWLRVRNLLRLK 126
Query: 122 N 122
+
Sbjct: 127 S 127
>gi|294498951|ref|YP_003562651.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294348888|gb|ADE69217.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 226
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD+ +R + L G+E + +N S + E+ L++ DI+MP+M+
Sbjct: 1 MKDRILIMDDDEQIRNLIAIYLENEGFEALKVSNAVSGLALLEEQEVDLIILDIMMPQMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE A + E ++ ++ ++ + L+KPF+ +L+ V +
Sbjct: 61 GIEAAFKIREE-KNMPIIMLSAKSEDMDKISGLTAGADDYLTKPFNPLELIARVKSQIRR 119
>gi|182680446|ref|YP_001834592.1| two component transcriptional regulator [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182636329|gb|ACB97103.1| two component transcriptional regulator, winged helix family
[Beijerinckia indica subsp. indica ATCC 9039]
Length = 273
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L GY V + N A +R F L++ D +MP +G +
Sbjct: 47 HLLIVDDDRRIRALLARFLADQGYRVTTAGNAEEATASLRNFAFDLIVLDAMMPGENGFD 106
Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D + V+ +T + L KP+ R+L + +L
Sbjct: 107 LLTRLRAQPSDLAHVPVLMLTACTEPEDRVRGFEAGSDDYLGKPYEPRELALRIASILRR 166
>gi|170757056|ref|YP_001781900.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169122268|gb|ACA46104.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 234
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFKGENYHMVIMDIMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|167755291|ref|ZP_02427418.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
gi|167704230|gb|EDS18809.1| hypothetical protein CLORAM_00801 [Clostridium ramosum DSM 1402]
Length = 228
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+ + R + L AGY +G A + + F L+L DI++PE++
Sbjct: 11 MN-KILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEIN 69
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL L ++ V+F+T V + KPF + +LV V +L
Sbjct: 70 GYELMEYIRPL--EIPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLRR 127
Query: 121 KN 122
+
Sbjct: 128 YH 129
>gi|332185092|ref|ZP_08386841.1| response regulator [Sphingomonas sp. S17]
gi|332014816|gb|EGI56872.1| response regulator [Sphingomonas sp. S17]
Length = 235
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + AL G+ +G +A + + P L + DI MP MD
Sbjct: 1 MTATIALVDDDRNILTSVSIALQAEGFLTRIYADGEAALKALIDNPPDLAIFDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR E + V+F+T A ++KPF R L+ + +L
Sbjct: 61 GLELLRRLREK-SQIPVIFLTSKDDELDEALGLAMGADDYIAKPFSQRLLIARIRAILRR 119
>gi|319406454|emb|CBI80094.1| transcriptional regulator BatR [Bartonella sp. 1-1C]
Length = 240
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 40/121 (33%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + DL V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126
Query: 122 N 122
N
Sbjct: 127 N 127
>gi|317506419|ref|ZP_07964224.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316255299|gb|EFV14564.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 226
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + R L L G++V + + GA A E +++ D+ +P+MD
Sbjct: 1 MT-RVLVVDDEPQILRALRINLTARGFDVTTASTGAGALRAAAERQPEVVVLDLGLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ V+ ++ + D+ ++KPF + +L+ + +
Sbjct: 60 GFEVLAGLRG-WTNVPVIVLSARTDSSEKVDALDAGADDYVTKPFGMDELLARLRAAVRR 118
>gi|302386981|ref|YP_003822803.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302197609|gb|ADL05180.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 237
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 4/123 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMP 57
M+ Q+IL+ +DD D+R L L GY V NG A V E P L++ DI+MP
Sbjct: 1 MSTAQQILVVDDDADIREVLRIQLENKGYSVWEAVNGNDAVAAVSENPDIDLIILDIMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ GI+ + ++ V+F+T + + + L KPF +L+ +V L
Sbjct: 61 GLSGIDACTQIRKITS-APVLFLTAKSKESDKTAAYENGGDDYLVKPFSQAELLMKVRSL 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|300310849|ref|YP_003774941.1| two component transcription regulator protein [Herbaspirillum
seropedicae SmR1]
gi|300073634|gb|ADJ63033.1| two component transcription regulator protein [Herbaspirillum
seropedicae SmR1]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +DD D+R L + L G ++ NG+ + E L++ D+ +P DG
Sbjct: 7 NTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + V+ +T L+KPF R+L + +L
Sbjct: 67 LTLCRNLRA-TSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRR 124
>gi|297192480|ref|ZP_06909878.1| transcriptional regulatory protein afsQ1 [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151373|gb|EFH31120.1| transcriptional regulatory protein afsQ1 [Streptomyces
pristinaespiralis ATCC 25486]
Length = 228
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|260642135|ref|ZP_05414654.2| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623317|gb|EEX46188.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1329
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1201
>gi|254514188|ref|ZP_05126249.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium NOR5-3]
gi|219676431|gb|EED32796.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium NOR5-3]
Length = 236
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ +L+ +D+ +R L AL Y + +N A+ V ++ ++L D ++P
Sbjct: 1 MSERTVLVVDDEFAIRDMLRMALEIVDYRCLEADNIQDAHAIVVDQRPDIVLLDWMLPGG 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIEL RR E ++ V+ +T A ++KPF R+L+ + L
Sbjct: 61 SGIELLRRLKRDETTREIPVIMLTAKTAEDNVIQGLEVGADDYMTKPFAPRELIARIKAL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|205352249|ref|YP_002226050.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205272030|emb|CAR36874.1| response regulator [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|326627294|gb|EGE33637.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRRGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|30249380|ref|NP_841450.1| response regulator PhoP [Nitrosomonas europaea ATCC 19718]
gi|30180699|emb|CAD85320.1| possible phoP; Response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Nitrosomonas europaea ATCC 19718]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ + + L AGY V + ++G E + DI +P G+E
Sbjct: 2 RILVIEDEFRLQNQIRRQLEAAGYMVDTSSSGDEGLFLATEYRPDAAIIDIGLPGKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E L ++ +T ++ L+KPF + +L V LL
Sbjct: 62 IIKALRERGSLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELQARVRALLRR 118
>gi|188494474|ref|ZP_03001744.1| DNA-binding response regulator CreB [Escherichia coli 53638]
gi|254037410|ref|ZP_04871487.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
gi|260858572|ref|YP_003232463.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O26:H11 str. 11368]
gi|188489673|gb|EDU64776.1| DNA-binding response regulator CreB [Escherichia coli 53638]
gi|226840516|gb|EEH72518.1| DNA-binding response regulator CreB [Escherichia sp. 1_1_43]
gi|257757221|dbj|BAI28723.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O26:H11 str. 11368]
gi|284924577|emb|CBG37716.1| two-component response regulator [Escherichia coli 042]
gi|309704906|emb|CBJ04259.1| two-component response regulator [Escherichia coli ETEC H10407]
gi|323157712|gb|EFZ43817.1| transcriptional regulatory protein creB [Escherichia coli EPECa14]
gi|323935191|gb|EGB31554.1| response regulator receiver domain-containing protein [Escherichia
coli E1520]
gi|323960113|gb|EGB55758.1| response regulator receiver domain-containing protein [Escherichia
coli H489]
gi|332346446|gb|AEE59780.1| transcriptional regulatory protein CreB [Escherichia coli UMNK88]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQAPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|301059863|ref|ZP_07200754.1| putative Nitrogen assimilation regulatory protein [delta
proteobacterium NaphS2]
gi|300446013|gb|EFK09887.1| putative Nitrogen assimilation regulatory protein [delta
proteobacterium NaphS2]
Length = 480
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DDD +R K L + GY V + +G + ++ P L++ D+ +P ++
Sbjct: 1 MS-TILIIDDDDQLRASFEKLLKEEGYRVETAPSGETGLKRIEALPPDLVILDMRLPGIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E +R LDP L V+ +T F ++ + KPF + ++++ + + L
Sbjct: 60 GLETFKRINALDPKLPVIIMTAFGTTETAIEATKMGAFDYILKPFDIPEMLDVIRKAL 117
>gi|301056178|ref|YP_003794389.1| DNA-binding response regulator [Bacillus anthracis CI]
gi|300378347|gb|ADK07251.1| DNA-binding response regulator [Bacillus cereus biovar anthracis
str. CI]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E ++L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYNLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|301052222|ref|YP_003790433.1| putative response regulator [Bacillus anthracis CI]
gi|300374391|gb|ADK03295.1| probable response regulator [Bacillus cereus biovar anthracis str.
CI]
Length = 223
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + +++ L +EV + NG + + +L D+++PEMDG E
Sbjct: 2 RLLVVEDNASLLESIVQILCDE-FEVDTALNGEDGLFLALQNIYDAILLDVMLPEMDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+F+T ++ + KPF +L + LL
Sbjct: 61 VIQKIRDEKIETPVLFLTARDSLEDRVKGLDFGGDDYIVKPFQAPELKARIRALLRR 117
>gi|237721722|ref|ZP_04552203.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448591|gb|EEO54382.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1329
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1201
>gi|298530355|ref|ZP_07017757.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509729|gb|EFI33633.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 361
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ I++ +D + L + L GY V++ G A +P L+L DI MP +DG
Sbjct: 7 KKNIMIIDDTPANLKLLQEMLQGRGYRVMAFPQGEMALKAAARKPPDLILLDIRMPGLDG 66
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ R E + D+ V+FI+ + + A ++KPFH ++ V +
Sbjct: 67 FQVCTRFKEQEGLKDIPVIFISALNDPSDKVQAFAAGGVDYVTKPFHPEEVHARVATHIR 126
Query: 120 IK 121
++
Sbjct: 127 LR 128
>gi|225575707|ref|ZP_03784317.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
10507]
gi|225037087|gb|EEG47333.1| hypothetical protein RUMHYD_03800 [Blautia hydrogenotrophica DSM
10507]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV + G + EE F L++ D+++PE+D
Sbjct: 1 MS-KILIVEDEEAIADLERDYLEISGFEVEIAHRGDIGLKRAMEEDFDLIILDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E+ + ++ ++ ++KPF +LV V L
Sbjct: 60 GFDICRQVREI-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLDR 118
>gi|153811679|ref|ZP_01964347.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
gi|149832420|gb|EDM87505.1| hypothetical protein RUMOBE_02071 [Ruminococcus obeum ATCC 29174]
Length = 233
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R ++ L Y+ ++ NG A + ++L D+ +P+M
Sbjct: 1 MNKTSILIVEDDRPIRNLIVTTLKTHEYKYLTAENGREAILEASSHNPDIILLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+G+++ ++ ++ ++ I+ + + ++ ++KPF + +L+ +
Sbjct: 61 EGVDVIKKIR-TWSNMPIIVISARSEDSDKIEALDAGADDYITKPFSVEELLARIR 115
>gi|153809460|ref|ZP_01962128.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
gi|149127920|gb|EDM19142.1| hypothetical protein BACCAC_03775 [Bacteroides caccae ATCC 43185]
Length = 1338
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L GY + SC NG A +RE L+++DI+MPEM G
Sbjct: 1078 QRILIVEDNDDLRNYLVDMLRT-GYNIQSCPNGKEALIIIREFNPDLVISDIMMPEMGGD 1136
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T + ++KPF + L + +LT
Sbjct: 1137 ELCATIKGDLEMSHIPVVLLTALGDEKHMLEGLEIGADAYITKPFSVGILKATIKNILTN 1196
Query: 121 K 121
+
Sbjct: 1197 R 1197
>gi|15614827|ref|NP_243130.1| two-component response regulator [Bacillus halodurans C-125]
gi|10174883|dbj|BAB05983.1| two-component response regulator [Bacillus halodurans C-125]
Length = 231
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ M+ + + +AGY V + +G +A D+++ EPF L+L DI++P++D
Sbjct: 1 MERRVLVVDDEKKMQVLITVCVSEAGYLVQTAASGLAAMDRLKAEPFDLVLLDIMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + L D+ ++ +T + KPF +L + +L
Sbjct: 61 GFSLIAQLRHLQEDVAIIMLTALGETEHIVRGLNEGADDYIVKPFEPDELNARILSVLRR 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|323701833|ref|ZP_08113503.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
gi|323533137|gb|EGB23006.1| multi-sensor hybrid histidine kinase [Desulfotomaculum nigrificans
DSM 574]
Length = 1274
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ +R + L GY V NG A + + + F ++L D+ MP MDG E
Sbjct: 1055 VLLVEDNQFNQRLIQHLLADNGYRVTLAENGQQALEMLNQSNFDIVLMDMQMPVMDGYET 1114
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E L ++ +T A N A L+KP L+ + + +
Sbjct: 1115 TRVIRSDERYKSLPIIALTAHAMKGDNEKCLAAGCDDYLAKPVKRDILIKTIKKYI 1170
Score = 98.3 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 5/115 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ ++ + L KAGY VV+ + G A + +L+ DI++P++ G E+
Sbjct: 796 VLVAEDEWTTKQLIANYLEKAGYTVVATDQGKQALTLAKIYQPDVLVLDILLPDLSGWEV 855
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ + D+ V+ + + + + K + LVN + +L
Sbjct: 856 LAKIKKDQETQDIPVVVCSVLPE---KERAFSLGAVDFIEKTVSEKVLVNRLQKL 907
Score = 67.5 bits (165), Expect = 5e-10, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMDGI 62
I+L +DD FL +G AGY+ S A + + ++ D++MP MDG
Sbjct: 917 HIVLIDDDKMALEFLNCIVGGAGYQTHSFMLAEEALNYIINGGQVHAIILDLLMPGMDGF 976
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT 119
E + V+ TG + K ++L+K F H L+ E++ L+
Sbjct: 977 EFLDNLRADANYKSIPVLIYTGKDLTKEDYQKLNDKYERLLNKSFMHPDILLKELSLLIK 1036
Query: 120 IKN 122
++
Sbjct: 1037 DRS 1039
>gi|319404967|emb|CBI78569.1| transcriptional regulator BatR [Bartonella sp. AR 15-3]
Length = 240
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 57/121 (47%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ L AL GY V S +G++A + P L + DI MP MDG
Sbjct: 8 TQTIVLVDDDCNILTSLSFALETEGYRVESYTDGSAALKNLTIHPPHLAIFDIKMPRMDG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL RR + D+ V+F+T ++KPF R L+ V +L
Sbjct: 68 MELLRRLRQK-SDIPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLIERVKAVLRRS 126
Query: 122 N 122
+
Sbjct: 127 H 127
>gi|326791336|ref|YP_004309157.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326542100|gb|ADZ83959.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 237
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ ED+ ++ F+ L Y+ + C G A + L+L D+ +P+M
Sbjct: 1 MNKTSILIVEDEQNICNFIATTLNAHEYKTLRCQTGKEALAIIPSHCPDLILLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ E ++ I+ + A + ++KPF +L+ + +
Sbjct: 61 DGLEVLTSVRE-WSSTPIIVISARSQEAEKVQALDLGADDYITKPFGTSELLARIRTAIR 119
>gi|317131537|ref|YP_004090851.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315469516|gb|ADU26120.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 247
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++ ED+ ++R + K L GY + +G A + L+L D++MP +D
Sbjct: 20 MQYTVMIVEDNAEIRGIVTKYLDAEGYIPLFAKDGFEALALFAQRLVHLVLLDVMMPGID 79
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R ++ D+ V+ +T + + KPF L++L+ VN L+
Sbjct: 80 GFEVLRELRKI-SDVPVILLTARQEETDRLNGFDCGADDYVVKPFSLKELMKRVNALIRR 138
>gi|325298158|ref|YP_004258075.1| two component transcriptional regulator, winged helix family
[Bacteroides salanitronis DSM 18170]
gi|324317711|gb|ADY35602.1| two component transcriptional regulator, winged helix family
[Bacteroides salanitronis DSM 18170]
Length = 232
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELFPDGEAGYKAFLKNKYDLCVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEIRQANTEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323484833|ref|ZP_08090189.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323693799|ref|ZP_08107993.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
gi|323401829|gb|EGA94171.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323502146|gb|EGB18014.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
Length = 233
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ ILL +D++ + L L KAGYEV+ +GA+A + R SL+L D+++P++ G
Sbjct: 4 NRTILLVDDEEKIVEVLQAYLEKAGYEVLCAYDGAAAMELFRNNDISLILLDLMLPDIMG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + ++ +T + KPF R +V + +L
Sbjct: 64 EEICRMVRAV-SRVPIIMLTAKTEENDLIKGLRLGADDYIFKPFSPRTVVAKAEAVLRR 121
>gi|318060148|ref|ZP_07978871.1| two-component system response regulator [Streptomyces sp. SA3_actG]
gi|333026707|ref|ZP_08454771.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
gi|332746559|gb|EGJ77000.1| putative two-component system response regulator [Streptomyces sp.
Tu6071]
Length = 227
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL EDD+ +RR + L + G+EV + +G +++ D ++P MD
Sbjct: 1 MS-RVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMD 59
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + ++ +T + KP R L + +L
Sbjct: 60 GLEVCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|315293305|gb|EFU52657.1| response regulator receiver domain protein [Escherichia coli MS
153-1]
Length = 229
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G++V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|229119146|ref|ZP_04248471.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
gi|228664299|gb|EEL19815.1| hypothetical protein bcere0017_53940 [Bacillus cereus Rock1-3]
Length = 230
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+
Sbjct: 11 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + + + ++KPF ++ L+ V LL
Sbjct: 71 GHELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRR 129
>gi|255655801|ref|ZP_05401210.1| two-component response regulator [Clostridium difficile QCD-23m63]
Length = 232
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GYE+V G A +K+ E ++ L D+++P++
Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYEIVEAGTGREAIEKMTTENDITIALLDVMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + E + ++ +T A + + KPF +++L+ V+ L+
Sbjct: 61 SGIEVCKFIRENFDQVGIIMLTAKAQEDDKIEGFISGADDYIIKPFSIKELLVRVSALIR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|255280977|ref|ZP_05345532.1| phosphate regulon transcriptional regulatory protein PhoB
[Bryantella formatexigens DSM 14469]
gi|255268425|gb|EET61630.1| phosphate regulon transcriptional regulatory protein PhoB
[Bryantella formatexigens DSM 14469]
Length = 224
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QK+L+ EDD ++ + G++V ++G +K++ + L+L D+++P +
Sbjct: 1 MDQKLLVVEDDRRLQEIISDYFESKGWQVRVTDDGEEVLEKIQTNSYQLILLDVMLPGEN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E+ D+ V+FIT + A ++KPF L L +V L+
Sbjct: 61 GFTICRKIREI-SDVPVIFITARVQEEDELNGYAMGADDYVTKPFSLPVLYAKVTALIGR 119
Query: 121 KN 122
+
Sbjct: 120 MH 121
>gi|218439825|ref|YP_002378154.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424]
gi|218172553|gb|ACK71286.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7424]
Length = 212
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+LL +DD ++ + L GYEV++ NG A + + + P +++ D++MPEMDG
Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALEILEQSPVPDMIICDVMMPEMDG 69
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +F++ + KPF +LV +V L+
Sbjct: 70 YTFVEKLRDDSRTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|169334006|ref|ZP_02861199.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
17244]
gi|169258723|gb|EDS72689.1| hypothetical protein ANASTE_00398 [Anaerofustis stercorihominis DSM
17244]
Length = 226
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + K GY+ V N+G A + + E F +++ DI+MPE+DG
Sbjct: 3 RILIVDDEPKIAELINKYATFEGYDTVEVNDGMKAIEICKVEDFDIIVMDIMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D V+ ++ + KPF ++L+ V +L
Sbjct: 63 AVREIRK-TKDTPVIMLSARGEEYDRIHGFEVGADDYVVKPFSPKELMMRVEAILKR 118
>gi|163731855|ref|ZP_02139302.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter litoralis Och 149]
gi|161395309|gb|EDQ19631.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter litoralis Och 149]
Length = 230
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L L G+ V NG A V E L++ D +MP + GIE+
Sbjct: 9 VLVVEDESAQREVLTYNLEAEGFAVSRAENGEEAMMLVDETAPDLIVLDWMMPNLSGIEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 69 CRRLKSKPETRAIPIIMLSARSEEVDRVRGLETGADDYVIKPYSVVELMARVRSQLRR 126
>gi|21223281|ref|NP_629060.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
gi|289769509|ref|ZP_06528887.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
TK24]
gi|19862536|sp|Q04942|AFSQ1_STRCO RecName: Full=Transcriptional regulatory protein AfsQ1
gi|13162096|emb|CAC33072.1| transcriptional regulatory protein [Streptomyces coelicolor A3(2)]
gi|289699708|gb|EFD67137.1| transcriptional regulatory protein afsQ1 [Streptomyces lividans
TK24]
Length = 225
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|150389477|ref|YP_001319526.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949339|gb|ABR47867.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 237
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N+KIL+ +D++D+ + L L + G + + + + S Y +E ++L DI++P+ D
Sbjct: 7 NEKILIIDDEEDILKLLSTVLKREGLDDIYTAGDANSGYALFEKEDPDIILLDIMLPDGD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R + ++ ++FI+ A ++KPF +++ V L
Sbjct: 67 GYEICKRIRAI-SNVPILFISAKTEEIDRVLGFALGGDDYITKPFSPKEVAYRVKASLRR 125
Query: 121 KN 122
N
Sbjct: 126 TN 127
>gi|109898617|ref|YP_661872.1| two component transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|109700898|gb|ABG40818.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
Length = 244
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMD 60
KILL +DD+ + L + L + G+EV + ++G +A + ++ + F ++ DI+MP M
Sbjct: 5 KYKILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMS 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +TG L KP + R+L + ++
Sbjct: 65 GLDVLRSVRAKR-QVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRR 123
>gi|117925402|ref|YP_866019.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
gi|117609158|gb|ABK44613.1| Cache sensor hybrid histidine kinase [Magnetococcus sp. MC-1]
Length = 1361
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL +DD L +L + G EV NG A + +++ L+L DI+MPEM+G
Sbjct: 1240 HTILAVDDDPRNLFVLTASLEQNGAEVHKALNGLKALEILKQHSVDLILMDIMMPEMNGY 1299
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E ++ ++ +T A LSKP L+N V +
Sbjct: 1300 EAIHEIRANPSYCEIPIIALTAKALKEDKQKCLDAGANDYLSKPVDYEILINMVQTWIKR 1359
Score = 87.9 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 7/118 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + G + +S ++G + ++ D+ +P+M G E
Sbjct: 977 KILVIDDDLLFVENISYINQAQGLDTLSAHDGREGLRVAKSHHPVGIILDLGLPDMRGEE 1036
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSN-APKNAKVLSKPFHLRDLVNEVNRLL 118
+ + + V I+ + L KP + + LL
Sbjct: 1037 VLEQLKRSPELRHIPVYIISAK----DKQRALVDQGAIGFLQKPVNDAQIATAQRTLL 1090
Score = 43.6 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 36 ASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGFAAVA 87
K PF L LTD + M +EL ++ + P+L ++ + +
Sbjct: 1131 EEVLAKTAGHPFDLFLTDYDIEGMTCVELCQQVRQHQPELPIIIYSSRSLNE 1182
>gi|332993804|gb|AEF03859.1| response regulator in two-component regulatory system with PhoQ
[Alteromonas sp. SN2]
Length = 224
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L L + GY V +NG A + E + L + DI +P+MDG E
Sbjct: 2 RILIAEDDSRLLTQLDSLLQQHGYSVDLADNGEHALYLLNEYAYDLAIIDIGLPKMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R A + D V+ +T + L+KPFH +L+ V L+
Sbjct: 62 VIRNARQEDIRCPVLILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARVKALIRR 118
>gi|25300968|pir||AC0630 response regulator copR [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
gi|16502270|emb|CAD08222.1| response regulator [Salmonella enterica subsp. enterica serovar
Typhi]
gi|29137883|gb|AAO69444.1| response regulator [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
Length = 248
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAY-QPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|29376802|ref|NP_815956.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
gi|256960861|ref|ZP_05565032.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
gi|2500744|sp|Q47744|VANR_ENTFA RecName: Full=Regulatory protein vanRB
gi|1209526|gb|AAB05622.1| response regulator [Enterococcus faecalis]
gi|29344267|gb|AAO82026.1| DNA-binding response regulator VanRB [Enterococcus faecalis V583]
gi|256951357|gb|EEU67989.1| regulatory protein vanRB [Enterococcus faecalis Merz96]
Length = 220
Score = 143 bits (362), Expect = 8e-33, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDDD + + L +A YEV +C +G A+ K E + L++ DI++P M+
Sbjct: 1 MSIRILLVEDDDHICNTVRAFLAEARYEVDACTDGNEAHTKFYENTYQLVILDIMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + D ++ +T + + + ++KPF +R L+ V LL
Sbjct: 61 GHELLREFRAQN-DTPILMMTALSDDENQIRAFDAEADDYVTKPFKMRILLKRVEALLRR 119
>gi|313123569|ref|YP_004033828.1| DNA-binding response regulator, ompr family (rec-whth domains)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
gi|312280132|gb|ADQ60851.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ND02]
Length = 222
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRAAGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLARLR 113
>gi|302384799|ref|YP_003820621.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302195427|gb|ADL02998.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 237
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD ++R + L GYEV +G ++ E L + D++MP MDGI
Sbjct: 5 HILLVEDDKEIREGIEIYLRSQGYEVFQAADGVEGLKVLQREEIHLAIVDVMMPRMDGIT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+ ++ + +SKPF +L+ VN L
Sbjct: 65 MTVKLREAY-DFPVIILSAKSEEVDKIMGLNIGADDYVSKPFTPMELLARVNSQLRR 120
>gi|302559197|ref|ZP_07311539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
gi|302476815|gb|EFL39908.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000]
Length = 240
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD +R L +AL GY V + +G A + +L+ D++MP +D
Sbjct: 1 MPHTVLLAEDDRAIRNALERALTLEGYRVTAVADGVEALAQAHRSRPDVLVLDVMMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
G+++ R V+ +T A + KPF + ++
Sbjct: 61 GLQVCRVLRAEGDSTPVLMLTALVETADRIAGLDAGADDYVVKPFDVEEV 110
>gi|302558338|ref|ZP_07310680.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
Tu4000]
gi|302475956|gb|EFL39049.1| DNA-binding response regulator TcrA [Streptomyces griseoflavus
Tu4000]
Length = 220
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L K L GY V ++G + E + LL+ DI++P ++G
Sbjct: 2 RLLIVEDEKRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGTYDLLILDIMLPGLNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ ++ +T + L+KPF LV + LL +
Sbjct: 62 VCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRR 119
>gi|242278841|ref|YP_002990970.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
salexigens DSM 2638]
gi|242121735|gb|ACS79431.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
salexigens DSM 2638]
Length = 656
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ KI+L +D++ +RRFL L GY V + NG A + +++TDI MP M
Sbjct: 8 MSDNKIMLVDDEEGLRRFLGLTLMDFGYTVETAENGVEALKLLENFHPDIIVTDIKMPRM 67
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI+L + E P ++V+ +TG + L +S A ++KP L + R++
Sbjct: 68 DGIDLLKAIKEDHPHIEVIMLTGHGDLDLAIESLKNDAADFITKPVDDDVLELSLERVME 127
>gi|254446238|ref|ZP_05059714.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
gi|198260546|gb|EDY84854.1| response regulator receiver domain protein [Verrucomicrobiae
bacterium DG1235]
Length = 224
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED + FL K LG+AGY V +G A + + DI+MP DG+
Sbjct: 2 KVLVAEDQTKVANFLAKGLGEAGYTVDLAKDGDEASWLAELHEYDAWIFDIMMPGRDGVS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + +T V L+KPF L +L+ + +L +
Sbjct: 62 LIRQLRRNGKRTPTILLTARNRVEDRVQGLDAGADDYLAKPFSLTELLARLRAILRRQ 119
>gi|153854307|ref|ZP_01995606.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
gi|149753082|gb|EDM63013.1| hypothetical protein DORLON_01601 [Dorea longicatena DSM 13814]
Length = 242
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++D+R + K L K Y V +C +G A D + + ++ DI++P DG E
Sbjct: 20 RLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMDYIDMTSYDGIILDIMLPGKDGYE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D V+ +T ++ L KPF +L+ + ++ K
Sbjct: 80 ILRELRRREDDTPVLLLTAKDSIEDRVKGLDLGADDYLIKPFAFEELLARIRVMMRRK 137
>gi|16273290|ref|NP_439531.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae Rd KW20]
gi|68250104|ref|YP_249216.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 86-028NP]
gi|145629534|ref|ZP_01785332.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 22.1-21]
gi|145632874|ref|ZP_01788607.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 3655]
gi|145634311|ref|ZP_01790021.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittAA]
gi|145639024|ref|ZP_01794632.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittII]
gi|148826862|ref|YP_001291615.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittGG]
gi|229844161|ref|ZP_04464302.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 6P18H1]
gi|229846768|ref|ZP_04466875.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 7P49H1]
gi|260580787|ref|ZP_05848613.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae RdAW]
gi|260582709|ref|ZP_05850497.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae NT127]
gi|319897031|ref|YP_004135226.1| DNA-binding response regulator in two-component regulatory system
with phor (or crec) [Haemophilus influenzae F3031]
gi|1172480|sp|P45189|PHOB_HAEIN RecName: Full=Phosphate regulon transcriptional regulatory protein
phoB
gi|1574213|gb|AAC23025.1| phosphate regulon transcriptional regulatory protein (phoB)
[Haemophilus influenzae Rd KW20]
gi|68058303|gb|AAX88556.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 86-028NP]
gi|144978377|gb|EDJ88141.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 22.1-21]
gi|144986530|gb|EDJ93096.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 3655]
gi|145268291|gb|EDK08285.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittAA]
gi|145271996|gb|EDK11905.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittII]
gi|148718104|gb|ABQ99231.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittGG]
gi|229810257|gb|EEP45976.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 7P49H1]
gi|229813155|gb|EEP48843.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 6P18H1]
gi|260092604|gb|EEW76541.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae RdAW]
gi|260094275|gb|EEW78175.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae NT127]
gi|309750983|gb|ADO80967.1| Phosphate regulon transcriptional regulatory protein [Haemophilus
influenzae R2866]
gi|317432535|emb|CBY80895.1| DNA-binding response regulator in two-component regulatory system
with PhoR (or CreC) [Haemophilus influenzae F3031]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ +R + L + Y+V+ ++ +A +K++E L+L D ++P
Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + + ++ +T + ++KPF + L+ + +
Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|332531423|ref|ZP_08407327.1| winged helix family two component transcriptional regulator
[Hylemonella gracilis ATCC 19624]
gi|332039092|gb|EGI75514.1| winged helix family two component transcriptional regulator
[Hylemonella gracilis ATCC 19624]
Length = 242
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++LL +DD+ + L L G+EV ++G++ + ++ L++ D+++P DG
Sbjct: 4 KPRVLLVDDDESITGLLSDYLAGFGFEVRIASDGSAMRAALAQDEADLVVLDVMLPGEDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L+R L ++ +T A L KPF R+LV + +L
Sbjct: 64 LVLSRELRRQYARLPIIMLTARAEAYDRVIGLEMGADDYLCKPFEPRELVARIRTVLRR 122
>gi|325277133|ref|ZP_08142779.1| two component heavy metal response transcriptional regulator
[Pseudomonas sp. TJI-51]
gi|324097710|gb|EGB95910.1| two component heavy metal response transcriptional regulator
[Pseudomonas sp. TJI-51]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGAYLQQGLSEAGFNVDRVMTGTDALQHALSESYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R D+ V+F+T V L KPF +L+ V LL N
Sbjct: 62 VLRMVRAAGKDVPVLFLTARDGVEDRVKGLELGADDYLIKPFAFSELLARVRTLLRRGN 120
>gi|323136350|ref|ZP_08071432.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
gi|322398424|gb|EFY00944.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
Length = 256
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L + L GY V S N A +++R+ F L++ D++MP G +
Sbjct: 22 HILVVDDDKRIRTLLSRYLANEGYLVSSAANAQEASERLRDLAFDLIVLDVMMPGESGKQ 81
Query: 64 LARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A R E ++ +T A A + L+KPF R+L + +L
Sbjct: 82 FAARLRESGEPQASAPILMLTALAETADRVEGLEAGVDDYLAKPFDPRELSLRIASILRR 141
>gi|260361519|ref|ZP_05774566.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Vibrio parahaemolyticus K5030]
gi|308112856|gb|EFO50396.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Vibrio parahaemolyticus K5030]
Length = 229
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G+EV N+G + + L+L D++MP+++G+E
Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|256827452|ref|YP_003151411.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
gi|256583595|gb|ACU94729.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
Length = 243
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61
IL A+DD D+R + L GY V +G A + + + L++ DIVMP+ G
Sbjct: 11 HILFADDDADIREVVSIMLRAEGYYVDLAGDGLEAMRYLDNPDSNYDLVILDIVMPQATG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + V+F+T A L KPF + + + V +L
Sbjct: 71 YDVCKHLRQ-TSAVPVLFLTARGQDEDKVRGFAFGGNDYLVKPFSIAEFIARVKAMLRR 128
>gi|212692570|ref|ZP_03300698.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
gi|237709115|ref|ZP_04539596.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|237724402|ref|ZP_04554883.1| two-component system response regulator [Bacteroides sp. D4]
gi|265752640|ref|ZP_06088209.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
gi|212664855|gb|EEB25427.1| hypothetical protein BACDOR_02067 [Bacteroides dorei DSM 17855]
gi|229437271|gb|EEO47348.1| two-component system response regulator [Bacteroides dorei
5_1_36/D4]
gi|229456811|gb|EEO62532.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|263235826|gb|EEZ21321.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
Length = 224
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI+L ED+ ++ F+ + L + G+EV +G + ++ ++ E F LL+ DI+MP M+G+E
Sbjct: 3 KIILVEDEINIASFIERGLREFGHEVSVVYDGNAGWELLQNESFDLLILDIIMPGMNGLE 62
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L KPF ++L + LL
Sbjct: 63 LCRMYRQRFGYHSPVVMLTALGTTDDIVKGLDAGADDYLVKPFSFQELEARIKALLRR 120
>gi|170681202|ref|YP_001744414.1| acetoacetate metabolism regulatory protein AtoC [Escherichia coli
SMS-3-5]
gi|170518920|gb|ACB17098.1| sigma-54 dependent response regulator AtoC [Escherichia coli
SMS-3-5]
Length = 461
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRTLQLQS 124
>gi|84578942|dbj|BAE72909.1| two-component response regulator mutated protein M3-f
[Streptococcus pyogenes]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|33864253|ref|NP_895813.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
gi|33641033|emb|CAE22162.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
Length = 268
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V + +G + L+L D+++P +D
Sbjct: 1 MKPCILLIEDDQDMRELVSSHLEHNGFDVQNAEDGIKGQALALQYTPDLILLDLMLPNVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT A L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMITALAGTKDKVTGFNSGADDYLTKPFDLEELQVRVKSLL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|150015478|ref|YP_001307732.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149901943|gb|ABR32776.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 235
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++R + L G+ ++ +G A + VR+ L++ D++MP +
Sbjct: 1 MEKGTILIVDDEKEIRDLVDIYLKSDGFNTINACDGLEAINLVRDNDIDLIILDVMMPNL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+GIE + E+ ++ ++ ++ + L+KPF+ +LV V L
Sbjct: 61 NGIETCLKIREI-KEMPIIMLSAKSEDIDKILGLNMGADDYLTKPFNPLELVARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|26251291|ref|NP_757331.1| DNA-binding response regulator CreB [Escherichia coli CFT073]
gi|91214116|ref|YP_544102.1| DNA-binding response regulator CreB [Escherichia coli UTI89]
gi|110644837|ref|YP_672567.1| DNA-binding response regulator CreB [Escherichia coli 536]
gi|117626758|ref|YP_860081.1| DNA-binding response regulator CreB [Escherichia coli APEC O1]
gi|191173173|ref|ZP_03034705.1| transcriptional regulatory protein CreB [Escherichia coli F11]
gi|215489711|ref|YP_002332142.1| DNA-binding response regulator CreB [Escherichia coli O127:H6 str.
E2348/69]
gi|218561631|ref|YP_002394544.1| DNA-binding response regulator CreB [Escherichia coli S88]
gi|218692788|ref|YP_002401000.1| DNA-binding response regulator CreB [Escherichia coli ED1a]
gi|227885110|ref|ZP_04002915.1| DNA-binding response regulator [Escherichia coli 83972]
gi|237704134|ref|ZP_04534615.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
gi|300939389|ref|ZP_07154056.1| response regulator receiver domain protein [Escherichia coli MS
21-1]
gi|300980841|ref|ZP_07175222.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|300983983|ref|ZP_07176834.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|301048371|ref|ZP_07195400.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|306815404|ref|ZP_07449553.1| DNA-binding response regulator CreB [Escherichia coli NC101]
gi|312966116|ref|ZP_07780342.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
gi|331661033|ref|ZP_08361965.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
gi|26111724|gb|AAN83905.1|AE016772_83 Transcriptional Regulatory protein creB [Escherichia coli CFT073]
gi|91075690|gb|ABE10571.1| transcriptional regulatory protein CreB [Escherichia coli UTI89]
gi|110346429|gb|ABG72666.1| transcriptional regulatory protein CreB [Escherichia coli 536]
gi|115515882|gb|ABJ03957.1| catabolic regulation response regulator CreB [Escherichia coli APEC
O1]
gi|190906558|gb|EDV66165.1| transcriptional regulatory protein CreB [Escherichia coli F11]
gi|215267783|emb|CAS12246.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli O127:H6 str. E2348/69]
gi|218368400|emb|CAR06220.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli S88]
gi|218430352|emb|CAR11222.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli ED1a]
gi|222036141|emb|CAP78886.1| Transcriptional regulatory protein creB [Escherichia coli LF82]
gi|226902046|gb|EEH88305.1| transcriptional regulatory protein CreB [Escherichia sp. 3_2_53FAA]
gi|227837939|gb|EEJ48405.1| DNA-binding response regulator [Escherichia coli 83972]
gi|294493345|gb|ADE92101.1| transcriptional regulatory protein CreB [Escherichia coli IHE3034]
gi|300299788|gb|EFJ56173.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|300306817|gb|EFJ61337.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|300409158|gb|EFJ92696.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|300455735|gb|EFK19228.1| response regulator receiver domain protein [Escherichia coli MS
21-1]
gi|305851066|gb|EFM51521.1| DNA-binding response regulator CreB [Escherichia coli NC101]
gi|307556633|gb|ADN49408.1| transcriptional regulatory protein CreB [Escherichia coli ABU
83972]
gi|307629570|gb|ADN73874.1| DNA-binding response regulator CreB [Escherichia coli UM146]
gi|312289359|gb|EFR17253.1| transcriptional regulatory protein creB [Escherichia coli 2362-75]
gi|312949030|gb|ADR29857.1| DNA-binding response regulator CreB [Escherichia coli O83:H1 str.
NRG 857C]
gi|315284971|gb|EFU44416.1| response regulator receiver domain protein [Escherichia coli MS
110-3]
gi|315298370|gb|EFU57625.1| response regulator receiver domain protein [Escherichia coli MS
16-3]
gi|320195353|gb|EFW69981.1| Two-component response regulator CreB [Escherichia coli WV_060327]
gi|323190322|gb|EFZ75598.1| transcriptional regulatory protein creB [Escherichia coli RN587/1]
gi|323950513|gb|EGB46391.1| response regulator receiver domain-containing protein [Escherichia
coli H252]
gi|323955193|gb|EGB50966.1| response regulator receiver domain-containing protein [Escherichia
coli H263]
gi|324007720|gb|EGB76939.1| response regulator receiver domain protein [Escherichia coli MS
57-2]
gi|324012409|gb|EGB81628.1| response regulator receiver domain protein [Escherichia coli MS
60-1]
gi|331052075|gb|EGI24114.1| transcriptional regulatory protein CreB [Escherichia coli TA206]
Length = 229
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 55/118 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G++V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFDVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|325674080|ref|ZP_08153770.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
gi|325555345|gb|EGD25017.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707]
Length = 229
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAK-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|270296880|ref|ZP_06203079.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317479144|ref|ZP_07938284.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|270272867|gb|EFA18730.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316904716|gb|EFV26530.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 239
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +LL ED+ + + L + + + +G K + +L+ D++MP M
Sbjct: 1 MEKITVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRKFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T + + + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKQTPVLFLTARSTINDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|326202207|ref|ZP_08192077.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325988002|gb|EGD48828.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 238
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ EDD D+R + L YEV+ NG + +K+ L++ DI+MP M
Sbjct: 1 MSRGRILIIEDDYDIREGIRILLESENYEVIEAENGMTGLEKLDTLM-DLVILDIMMPGM 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ ++ L V+F+T A + L+KPF +L+ V L+
Sbjct: 60 SGLRTCEEIRKV-SFLPVLFLTAKAQESDKLIGLMAGGDDYLTKPFTYAELLGRVKALVR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|255533329|ref|YP_003093701.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255346313|gb|ACU05639.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 234
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+D + + L GY+V + +G +A +EE F+L++ D+++PEMDG +
Sbjct: 6 RILLVEDEDHLLDAIKLNLELEGYKVHAVKDGKTALKVFKEERFNLIILDVMLPEMDGFQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++F+T L KPF+L +L+ V L+
Sbjct: 66 VCETIRLENTEVPILFLTAKNTSEDRVMGLKKGADDYLVKPFNLEELILRVGILVKR 122
>gi|227538742|ref|ZP_03968791.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
gi|227241251|gb|EEI91266.1| response regulator [Sphingobacterium spiritivorum ATCC 33300]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKILLAEDD ++ L L G ++V C +G A ++ + L + D++MP+ DG
Sbjct: 5 QKILLAEDDPNLGELLKDYLELKGKFDVTLCQDGEEALVAFHKDQYDLCILDVMMPKKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + + V++ T + + ++KPF + +L+ +N LL
Sbjct: 65 FSLGKDIRKTNTTVPVIYATAKGMMEDKTQAFELGGDDYITKPFRVEELLLRINALLKRS 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|256005030|ref|ZP_05430001.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281418071|ref|ZP_06249091.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|255990998|gb|EEU01109.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|281409473|gb|EFB39731.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum JW20]
gi|316939889|gb|ADU73923.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 239
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K I + ED+ ++ L L + GYEV +G + ++ V + L + DI++P +
Sbjct: 4 MAKKLIYIVEDEKHIQELLRFNLEENGYEVECFEDGETMFEVVERKKPDLFVLDIMLPGV 63
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ ++ E + ++ +T +SKPF +R+ V V
Sbjct: 64 DGFEICKKIKENYDLKKIPIIMLTAKNDELDRVLGLELGADDYISKPFSVREFVARVKVA 123
Query: 118 LTIK 121
+
Sbjct: 124 FRRQ 127
>gi|167759612|ref|ZP_02431739.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
gi|167662738|gb|EDS06868.1| hypothetical protein CLOSCI_01970 [Clostridium scindens ATCC 35704]
Length = 229
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V G A D + L + DI++P++D
Sbjct: 1 MN--ILVVDDEKEIADVIELYLQNDQYSVYKFYTGQEALDCIGGMKIDLAILDIMLPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T + KPF+ +LV V L
Sbjct: 59 GFQILKQIREKY-TFPVIMLTAKTEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117
>gi|152999147|ref|YP_001364828.1| two component transcriptional regulator [Shewanella baltica OS185]
gi|160873754|ref|YP_001553070.1| two component transcriptional regulator [Shewanella baltica OS195]
gi|151363765|gb|ABS06765.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS185]
gi|160859276|gb|ABX47810.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS195]
gi|315265979|gb|ADT92832.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS678]
Length = 227
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +LL ED+ + F+ + L + V C +G Y +++ DI++P D
Sbjct: 1 MN--VLLVEDEQKIADFICEGLRAKHFNVTHCADGNQGYQAASNNTHDVIILDIMLPGRD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + D ++ +T + L+KPF++ +L + LL
Sbjct: 59 GLDILRSLRQQGVDTPIILLTARNELGDRVQGLDMGADDYLAKPFYVEELHARIQALLRR 118
>gi|116623411|ref|YP_825567.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116226573|gb|ABJ85282.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L L GY+V +G +A + RE F L+L D+++P DG+E
Sbjct: 3 RILVVEDEPGIALGLEDDLTIEGYDVEVARDGVTAARRGREGNFDLILLDVMLPGKDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ +T A ++KPF ++L + LL
Sbjct: 63 VCRELRRAGLKTPILMLTAKARETEKVMGLEIGADDYVTKPFGTKELRARIKALLRR 119
>gi|312131206|ref|YP_003998546.1| histidine kinase [Leadbetterella byssophila DSM 17132]
gi|311907752|gb|ADQ18193.1| histidine kinase [Leadbetterella byssophila DSM 17132]
Length = 1314
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+R +L + G +V NG A+D ++++ +L+D++MPEMD
Sbjct: 1059 MDAHLLIVEDNADLRNYLEEIFGST-LKVSMATNGKEAWDMIQKDTPDAVLSDVMMPEMD 1117
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL + L ++ IT AA + + KPF+ + L ++V LL
Sbjct: 1118 GLELCSKVKNHPKFAHLPIVLITARAAAVHELEGIESGADDYIVKPFNPKILFSKVTALL 1177
Query: 119 TIK 121
+
Sbjct: 1178 QNR 1180
>gi|224536093|ref|ZP_03676632.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
14838]
gi|224522312|gb|EEF91417.1| hypothetical protein BACCELL_00958 [Bacteroides cellulosilyticus DSM
14838]
Length = 1346
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+DMR++++ L K Y V G SA RE+ L+++DI+MP MDG+E
Sbjct: 1097 RILVVEDDEDMRQYIVSKLSKT-YNVQEAPEGKSAIHIAREQMPDLIISDIMMPVMDGLE 1155
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + V+ +T + D + KPF+ + L+ ++ L+ +
Sbjct: 1156 LCRAIKNDMALAHIPVVLLTAKSLEEHVKDGYQALADDYILKPFNAQILLAKIESLIKNR 1215
>gi|213582617|ref|ZP_03364443.1| DNA-binding response regulator CreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 142
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ L ED+ + LI L G+ V G A +K R++ ++ D+ +P++ G EL
Sbjct: 6 VWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKARQQRPDAVILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVSARVRTLLRR 121
>gi|182625928|ref|ZP_02953693.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
gi|177908841|gb|EDT71339.1| DNA-binding response regulator [Clostridium perfringens D str.
JGS1721]
Length = 226
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E
Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ ++ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|149911937|ref|ZP_01900535.1| hypothetical two-component response regulator [Moritella sp. PE36]
gi|149804984|gb|EDM65013.1| hypothetical two-component response regulator [Moritella sp. PE36]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 46/119 (38%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED D+ + GY + +G Y + L++ DI MP MDG+
Sbjct: 2 KILLVEDHQDIAGIIFDFFEIKGYTLDYAQDGVQGYALASNNYYDLIILDIQMPRMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ E D ++ +T L KPF L L + L ++
Sbjct: 62 VCQKLREQGDDTPILMLTARDTREDTLAGFDCGADDYLIKPFDLDILAARIQALHRRRS 120
>gi|114707433|ref|ZP_01440329.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal:Sugar transporter superfamily [Fulvimarina
pelagi HTCC2506]
gi|114536992|gb|EAU40120.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal:Sugar transporter superfamily [Fulvimarina
pelagi HTCC2506]
Length = 219
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDDD++RR L +AL GY V +G + EP+ ++ D+ +P MDGI
Sbjct: 2 RVLVVEDDDNLRRQLREALEAGGYVVDEAADGEEGHFLGDTEPYDAIVLDVGLPVMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + ++KPFH+ +++ V L+
Sbjct: 62 VLERWRRDQKKVPVLILTARDRWSDKVAGIDAGADDYVTKPFHIEEVLARVRALIRR 118
>gi|56477307|ref|YP_158896.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
gi|56313350|emb|CAI07995.1| DNA-binding response regulator ColR [Aromatoleum aromaticum EbN1]
Length = 227
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L GY V +G S E + L++ DI++P +DG +
Sbjct: 2 RILVIEDNRDILVNVLDYLQLKGYIVDCAQDGLSGLHLAVTEQYDLIVLDIMLPGVDGYQ 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D ++ +T A+ L KPF L +LV + +L
Sbjct: 62 VCKRLREDAGRDTPIIMLTARDALDDRLRGLNAGADDYLIKPFALSELVARIEAILRR 119
>gi|86139704|ref|ZP_01058271.1| DNA-binding response regulator [Roseobacter sp. MED193]
gi|85823595|gb|EAQ43803.1| DNA-binding response regulator [Roseobacter sp. MED193]
Length = 240
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D +R + + L K G + K+ F LL+ D++MP DG+
Sbjct: 6 HILIVDDHAQIRESVARFLEKNGMRTTVARDAVEMDAKLATGHFDLLVLDVMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR DL ++ +T L+KPF+ R+L+ + +L N
Sbjct: 66 VCRRLAPEG-DLPIIMLTALGEETDRIVGLEIGADDYLAKPFNPRELLARIKSVLRRSN 123
>gi|95931396|ref|ZP_01314106.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95132552|gb|EAT14241.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 452
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 7/129 (5%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ MR L L + Y+V + NG A +KV + L+L D+ MPE
Sbjct: 1 MSKNCSILIVDDESAMRHLLQTILEEEEYQVDAAENGKQALEKVEHNHYDLVLCDVRMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL- 117
+DGI R P L V+ ++ + ++ + +SKPF +++ + +
Sbjct: 61 LDGIGFLSRILPKFPSLTVIMMSAYGSLETALNCMKNGAYDYISKPFRPDEIILTLKKAQ 120
Query: 118 ----LTIKN 122
L +N
Sbjct: 121 ERLRLQREN 129
>gi|313622522|gb|EFR92939.1| regulatory protein VanR [Listeria innocua FSL J1-023]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MP+M+
Sbjct: 1 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R ++ ++ A + KPF+ +L V +L
Sbjct: 61 GLEVCRLMRNNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 120
>gi|238921931|ref|YP_002935445.1| two-component system, OmpR family, KDP operon response regulator
KdpE [Eubacterium eligens ATCC 27750]
gi|238873603|gb|ACR73311.1| two-component system, OmpR family, KDP operon response regulator
KdpE [Eubacterium eligens ATCC 27750]
Length = 232
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y ++ NG SA + ++L D+ +P++
Sbjct: 1 MNKTQILVVEDDSPIRNLITTTLKTNNYRYLTAVNGESAISQTASHNPDIILLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ + ++ I+ A ++ L+KPF + +L+ + +
Sbjct: 61 DGVEVIKKIR-TWTNTPIIVISARTEDADKIEALDAGADDYLTKPFSVDELLARLRVTVR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|256419393|ref|YP_003120046.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256034301|gb|ACU57845.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 234
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58
M +ILL ED+ D+ + + L +EV NG+ A ++ + P + +LL D+ +P
Sbjct: 1 MRHRILLVEDEADLGNVVKQYLELMDFEVNWQPNGSDALEEFKRAPELYHILLIDVNLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ELA +++ + +F+T + + KPF + +LV + ++
Sbjct: 61 MDGFELAEHIVKINNQVPFLFLTARGEKTDRLNGLKIGADDYVVKPFDIDELVLRIRNII 120
Query: 119 TIK 121
K
Sbjct: 121 KRK 123
>gi|227530485|ref|ZP_03960534.1| response regulator [Lactobacillus vaginalis ATCC 49540]
gi|227349590|gb|EEJ39881.1| response regulator [Lactobacillus vaginalis ATCC 49540]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ +F+ L GYE +G + + F L+L D+++PE++
Sbjct: 1 MS-RILIIEDEENLAKFVEMELKHEGYETDVELDGRAGLQAALNQDFDLILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR EL + ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREL-KNTPIIIMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|253698922|ref|YP_003020111.1| Fis family transcriptional regulator [Geobacter sp. M21]
gi|251773772|gb|ACT16353.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M21]
Length = 456
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KI++ +D+ +R L + L K GYEVV+ G A REE L+L D +P +
Sbjct: 1 MRKIKIMVVDDEHLIRWSLEQNLKKQGYEVVTAGTGEDALRLAREEQPDLVLLDYHLPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+E+ +R ELD D+ V+ +T + ++ ++KPF+L ++ + + L
Sbjct: 61 NGLEVLQRIKELDEDILVIMVTAQGGLETAVNTMRHGAYDYINKPFNLDEMALVIRKALE 120
>gi|160936076|ref|ZP_02083449.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
BAA-613]
gi|158440886|gb|EDP18610.1| hypothetical protein CLOBOL_00972 [Clostridium bolteae ATCC
BAA-613]
Length = 219
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + L +GY S +GA A + + F L+L DI++P +DG +
Sbjct: 3 KVLIVDDEKPICDLIDLNLSASGYHCTSVQDGAEALRLIENQFFDLILLDIMLPGVDGYD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D+ V+FIT V L KPF + +LV V +L N
Sbjct: 63 IMSYIRPM--DIPVIFITARHEVKDRVKGLRLGADDYLVKPFDVVELVARVEAVLRRYN 119
>gi|153956437|ref|YP_001397202.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146349295|gb|EDK35831.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + +++ + C +GA +++ + L+L D++MP MD
Sbjct: 1 MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ +T L+KPF + +L+ V L+
Sbjct: 61 GFQTMEKIRQ-TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRR 119
>gi|119486065|ref|ZP_01620127.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
gi|119456840|gb|EAW37968.1| two-component sensor histidine kinase [Lyngbya sp. PCC 8106]
Length = 479
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D D R L L K GY+V NG A + L+L DI+MPEM+G E+
Sbjct: 16 IVVVDDTPDNLRLLGNILRKEGYKVRLIPNGELALSGIELLRPDLILLDIMMPEMNGYEV 75
Query: 65 ARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ V+FI+ V+ + ++KPF +++++ V L I
Sbjct: 76 CQHLKAREHSRDVPVIFISAIDEVSDKVKAFEAGGVDYITKPFQVQEVLVRVETHLKI 133
>gi|78045188|ref|YP_358964.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997303|gb|ABB16202.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
Length = 234
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ EDD + L AG+ V NG K EE + L+L D+++P +DG
Sbjct: 2 KKVLIIEDDRSIAELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ D V+ ++ ++KPF +LV V +
Sbjct: 62 EVLRKVRAE-KDTPVLLVSARREDIDKIRGLGLGADDYITKPFSPSELVARVKAHIGR 118
>gi|307131849|ref|YP_003883865.1| transcriptional regulatory protein tctD [Dickeya dadantii 3937]
gi|306529378|gb|ADM99308.1| Transcriptional regulatory protein tctD [Dickeya dadantii 3937]
Length = 224
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL +AG+ V +G +A + +E ++L++ D+ +P MDG+
Sbjct: 2 RLLLVEDHPELAHWLEKALSEAGFAVDRVGDGVAADQLLLQESYALVVLDVSLPRMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T A+VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQNLPVLLLTARASVADRVRGLNLGADDYLTKPFELAELEARLRALLRR 118
>gi|299144931|ref|ZP_07037999.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298515422|gb|EFI39303.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1372
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + +EV++ NG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYISESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + ++ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 RQLKEDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230
>gi|288956905|ref|YP_003447246.1| two-component response regulator [Azospirillum sp. B510]
gi|288909213|dbj|BAI70702.1| two-component response regulator [Azospirillum sp. B510]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + L +DD ++ + AL G++V + +GA A + + P L + DI MP MD
Sbjct: 1 MAHTVALVDDDRNILASVSIALEAEGFDVRTYTDGAEALRGLSQRPPDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF R L+ + LL
Sbjct: 61 GMELLQRLRQ-TSQMPVIFLTSKDDELDELMGLRMGADDYIKKPFSQRLLIERIRALLRR 119
Query: 121 K 121
+
Sbjct: 120 E 120
>gi|299821998|ref|ZP_07053885.1| response regulator [Listeria grayi DSM 20601]
gi|299816626|gb|EFI83863.1| response regulator [Listeria grayi DSM 20601]
Length = 230
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD ++ + L GY++ NG A++ V+++ SL++ D++MPEMDG+E+
Sbjct: 4 ILIADDDKEIVDLVKLYLQNEGYQIYQAYNGKEAWEIVQDKMPSLVILDVMMPEMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ A + KPF+ +L V +L
Sbjct: 64 CKKMRNENILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKVILRR 119
>gi|212635852|ref|YP_002312377.1| two-component response regulator [Shewanella piezotolerans WP3]
gi|212557336|gb|ACJ29790.1| Two-component response regulator, putative [Shewanella
piezotolerans WP3]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED++++ + L GY V NGA+ + + + +++ D+ MP+M G+EL
Sbjct: 7 VLLVEDNNELAGSVADYLSALGYGVDFAFNGAAGLQLLEKNNYDIVIFDVAMPKMSGLEL 66
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ EL + V+F+T + L KPF L +L + LL+
Sbjct: 67 CHKLRHELFSPIPVIFLTARDTLEDKKAGFQAGADDYLVKPFALEELHLRLQALLSR 123
>gi|171059161|ref|YP_001791510.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
gi|170776606|gb|ACB34745.1| PAS/PAC sensor hybrid histidine kinase [Leptothrix cholodnii SP-6]
Length = 846
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ R + L AG++V +NG A ++++ P L++ DI MP MDG+
Sbjct: 729 VLLVDDEPINREVAAEILEDAGFDVTLASNGMEALERLQRHPVDLVIMDIQMPGMDGLTT 788
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ L ++ +T A + + KP L V L
Sbjct: 789 TRRIRQMPDRAHLPIIAMTANAFAEDETECLNAGMNAFIPKPIDPERLYRIVLSCLDR 846
>gi|153870115|ref|ZP_01999582.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
gi|152073419|gb|EDN70418.1| adenylate/guanylate cyclase [Beggiatoa sp. PS]
Length = 396
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
+L+ +DD + L L Y + G A + PF+++L DI+MP+M G
Sbjct: 251 HVLIVDDDPINLQILENQLRVENYAITRATTGHDALKALESGIPFAIILLDIMMPKMSGF 310
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + P L ++ +T V+ L+KPF +L+ + + +
Sbjct: 311 EVCQIIRQTYPANQLPIIMLTAKNQVSDLVQGMQAGANDYLTKPFSKGELITRIKTHIQL 370
>gi|148654369|ref|YP_001274574.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148566479|gb|ABQ88624.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 245
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD + L +AG++V + ++G + + R L++ D+++P +D
Sbjct: 1 MT-TILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + R + + ++ +T A + KPF + +L+ V +L
Sbjct: 60 GFSVCRAVAKET-TVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILR 117
>gi|295693262|ref|YP_003601872.1| response regulator [Lactobacillus crispatus ST1]
gi|295031368|emb|CBL50847.1| Response regulator [Lactobacillus crispatus ST1]
Length = 180
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 58/112 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ + R L A+ AGY+V +NG A + +E + +++ DI+MP MDGI
Sbjct: 2 KILVAEDEPQLLRVLTVAMEHAGYDVDPVDNGLKAVEHAKENSYDVIMLDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ E ++ +T A V L+KPF L++L+ +
Sbjct: 62 ALKKIRESGDKTYILMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|295133762|ref|YP_003584438.1| two component transcriptional regulator winged helix family protein
[Zunongwangia profunda SM-A87]
gi|294981777|gb|ADF52242.1| two component transcriptional regulator, winged helix family
protein [Zunongwangia profunda SM-A87]
Length = 222
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L + + V +NG + + LLL D ++P + GIE
Sbjct: 2 RILIVEDETGISGFLKQGLEEESFAVDIADNGKKGLELALTGKYDLLLLDWMLPGLSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + D + V+F+T V + KPFH +L+ + L K+
Sbjct: 62 ICRQFRKEDKETPVLFLTAKDTVDETIFGLQSGANDYIKKPFHFEELLERIKVQLRPKS 120
>gi|290352129|dbj|BAI78775.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|229125247|ref|ZP_04254353.1| Two-component response regulator [Bacillus cereus 95/8201]
gi|228658207|gb|EEL13941.1| Two-component response regulator [Bacillus cereus 95/8201]
Length = 221
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+D+ M L L GY +G A V + F LLL DI+MPEM+G E +
Sbjct: 2 DDEPRMLDLLSLYLTPRGYHCTKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++ +T ++KPFH +L+ + +L
Sbjct: 62 RE-FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112
>gi|254385162|ref|ZP_05000494.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
gi|194344039|gb|EDX25005.1| transcriptional regulatory protein afsQ1 [Streptomyces sp. Mg1]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|192361000|ref|YP_001982278.1| abfR arabinofuranosidase two component system response regulator
[Cellvibrio japonicus Ueda107]
gi|190687165|gb|ACE84843.1| abfR arabinofuranosidase two component system response regulator
[Cellvibrio japonicus Ueda107]
Length = 232
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ + L + L G+ V ++G A + + +SL++ D+++P G +
Sbjct: 3 KILLIDDDKELCQLLSEYLSNEGFAVDMIHDGQQAVELTEQAAYSLIVLDVMLPVRSGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T L+KP R+LV + +L
Sbjct: 63 VLKILRQ-HSQTPVIMLTAKGDTVDRVIGLEIGADDYLAKPCDPRELVARIRAILRR 118
>gi|154499881|ref|ZP_02037919.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
29799]
gi|150271479|gb|EDM98736.1| hypothetical protein BACCAP_03538 [Bacteroides capillosus ATCC
29799]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + + + Y+ G+ D + +++ D+++P ++G E
Sbjct: 2 RILIVEDEVRLAEALSQIMAEQRYQTDVVYTGSDGLDYALTSQYDVIVLDVMLPGLNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR V+ +T A ++KPF +L+ + L +
Sbjct: 62 VVRRLRSAHNSTPVLMLTAKDETADKVTGLDCGADDYMTKPFDPEELMARIRALTRRQ 119
>gi|220930052|ref|YP_002506961.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|220000380|gb|ACL76981.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 234
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L GY V+ NG + + ++ LL+ DI++P DG+++
Sbjct: 6 ILVIDDDKEIVELIRIYLQNEGYNVLVGFNGDEGVEILAKQKIHLLILDIMLPGEDGLQI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E + ++ ++ + L+KPF+ +L+ V L
Sbjct: 66 CRKIRESYI-IPIIMVSAKSCDMDKIMGLGTGADDYLAKPFNPMELMARVKSQLRR 120
>gi|222159810|gb|ACM47283.1| response regulator VanRD [Enterococcus faecium]
Length = 232
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ +D+ ++ + L GY V NG A + L + DI++P++D
Sbjct: 1 MNEKILVVDDEKELADLVEVYLKNDGYTVYKFYNGKDALKCIESVELDLAILDIMLPDVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G ++ ++ E V+ +T + ++KPF+ ++V V L
Sbjct: 61 GFQICQKIREKFY-FPVIMLTAKVEDGDKIMGLSV-ADDYITKPFNPLEMVARVKAQLR 117
>gi|262199161|ref|YP_003270370.1| transcriptional regulator [Haliangium ochraceum DSM 14365]
gi|262082508|gb|ACY18477.1| two component transcriptional regulator, winged helix family
[Haliangium ochraceum DSM 14365]
Length = 243
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+ ILL ED+ D+ + L + GY ++G +A +++ EP +L D+++P++ G
Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + E D+ V+ +T A + KPF +R+L+ + LL
Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130
Query: 120 I 120
Sbjct: 131 R 131
>gi|51473615|ref|YP_067372.1| response regulator protein OmpR [Rickettsia typhi str. Wilmington]
gi|51459927|gb|AAU03890.1| response regulator protein OmpR [Rickettsia typhi str. Wilmington]
Length = 222
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 58/122 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD + L + L K + V + N+ A + ++ + L++ D+++PE+
Sbjct: 1 MQPHILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPEIT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ A + + ++ +T + + ++KPF R+L+ +N L+
Sbjct: 61 GLDFATTIRDAGNTIPIVMLTALSEANERVKGLEAGASDYITKPFEPRELLLRINNLINN 120
Query: 121 KN 122
N
Sbjct: 121 YN 122
>gi|320160764|ref|YP_004173988.1| putative OmpR family two-component system response regulator
[Anaerolinea thermophila UNI-1]
gi|319994617|dbj|BAJ63388.1| putative OmpR family two-component system response regulator
[Anaerolinea thermophila UNI-1]
Length = 253
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ ED+ D L + L AGY V+S NG A K + L+L D++MPEMDG
Sbjct: 27 QTILVVEDEPDTVFLLKQILRMAGYNVLSAVNGYEAIQKCMDIHPDLILLDLMMPEMDGW 86
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D+ V+ I+ + ++KPF ++V V +L
Sbjct: 87 QTYQYLREAT-DVPVIVISAIHNKEDVVRALRIGMDDYITKPFVNAEVVARVQAVLRR 143
>gi|317495281|ref|ZP_07953651.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
gi|316914703|gb|EFV36179.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
Length = 238
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D++ +R+ LI L K GY V +NG ++++ +S +L D+ +P ++
Sbjct: 1 MAERVLVIDDEERIRKLLIMYLEKEGYIVDEASNGQDGLERLKYMDYSCVLLDVHLPILN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + V+ ++ A + + KPF R+L+ +N +L
Sbjct: 61 GKSILSELRK-TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRINAILQR 119
>gi|313898659|ref|ZP_07832194.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312956543|gb|EFR38176.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 236
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ +R + L GY V NG + ++ E +L + DI+MP MD
Sbjct: 1 MDHNILVVEDEKGIREAIQIYLKNQGYRVFLAENGQEGLNIIKRETINLAVVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + D ++F++ + ++KPF +L+ V L
Sbjct: 61 GITMTMEVRKDY-DFPIIFLSAKSEDIDKITGLNIGADDYITKPFGSMELLARVRSQLRR 119
>gi|291454109|ref|ZP_06593499.1| two-component system response regulator [Streptomyces albus J1074]
gi|291357058|gb|EFE83960.1| two-component system response regulator [Streptomyces albus J1074]
Length = 246
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D LL+ DI++P DG+
Sbjct: 20 RRVLVVEDDTTIVEAISARLRAEGFLVQTATDGPAAVDTAEAWQPDLLILDIMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + VM +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQAQRP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|238759013|ref|ZP_04620184.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
35236]
gi|238702824|gb|EEP95370.1| Transcriptional regulatory protein tctD [Yersinia aldovae ATCC
35236]
Length = 221
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G+EL
Sbjct: 1 MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYALVVLDVALPRLNGLELL 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+ +T VA L+KPF L +L + LL
Sbjct: 61 ARLRKRGQTLPVLLLTARTEVADRVKGLNQGADDYLTKPFELDELEARIRALLRR 115
>gi|229489226|ref|ZP_04383092.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
SK121]
gi|229324730|gb|EEN90485.1| transcriptional regulatory protein ResD [Rhodococcus erythropolis
SK121]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +++L+ +D+ + + L GY+V +G SA + + L++ D++MP
Sbjct: 1 MSQRRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVARCEQMDADLVVLDVMMPGF 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR + P + V+ +T A LSKPF +R LV V LL
Sbjct: 61 DGLEVCRRIQAVRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|189425842|ref|YP_001953019.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
gi|189422101|gb|ACD96499.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter lovleyi SZ]
Length = 480
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 67/120 (55%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+A+D++ MR L KAL K GY V +G A +VRE+ + L++ DI MP M G+
Sbjct: 4 HRILVADDEESMRWVLSKALRKKGYSVDLAADGNQALRQVREQSYDLVIVDIKMPGMSGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E +A EL PDL V+ +T A++ ++ ++KPF L + + ++ ++
Sbjct: 64 EFLDKARELRPDLLVVVMTAEASMKNAVEAMKRGAYDYITKPFDLEVIDAIIEKVSRARD 123
>gi|254495202|ref|ZP_05108126.1| two-component system response regulator [Polaribacter sp. MED152]
gi|85819554|gb|EAQ40711.1| two-component system response regulator [Polaribacter sp. MED152]
Length = 225
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LLAED+ + + ++L + V NG A + + +L+ D++MP+
Sbjct: 1 MDKIKVLLAEDETSLGMIVKESLESRDFVVYHAENGEEASEIYTKNEPDILVLDVMMPKK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG LA+ E + + ++F+T + A + L KPF + +L+ + LL+
Sbjct: 61 DGFTLAKEIRETNKSIPIIFLTAKSQTADVLEGFNLGGNDYLKKPFSMEELIVRIKALLS 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|84497467|ref|ZP_00996289.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
gi|84382355|gb|EAP98237.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
Length = 254
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD + L L +AG+E V +G +A RE +++ D+++P M G+E
Sbjct: 24 TVLVVEDDPTVSSVLSAYLRRAGFEPVLAADGLTALQAWRERRPDVVILDVMLPLMSGLE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D V+ ++ + KPF R+ + V LL
Sbjct: 84 VLRRRRAEDDHAAVIVLSARGEEDDRLLGLELGADDYMVKPFSPREALGRVEALLRR 140
>gi|290893701|ref|ZP_06556682.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290556774|gb|EFD90307.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|307571948|emb|CAR85127.1| DNA-binding two-component response regulator [Listeria
monocytogenes L99]
Length = 237
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD ++ + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 7 MTTSILIADDDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 67 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 126
>gi|262408473|ref|ZP_06085019.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294810661|ref|ZP_06769310.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|262353338|gb|EEZ02432.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294442130|gb|EFG10948.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1322
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1077 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1135
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1136 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1194
>gi|255281631|ref|ZP_05346186.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
gi|255267698|gb|EET60903.1| DNA-binding response regulator [Bryantella formatexigens DSM 14469]
Length = 227
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++RRFL L AGY + A + E+ L++ D++MP MDG
Sbjct: 4 ILVVDDDKNIRRFLCAVLSNAGYRPIGAACAEDALKIMEEKRIDLIVLDVMMPGMDGYAF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + DL V+ +T ++KP + +L+ + LL
Sbjct: 64 TKLLRDCRNDLPVLMLTAKQLPEDLKQGFLAGTDDYMTKPVNEEELLLRIGALLRR 119
>gi|253701161|ref|YP_003022350.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M21]
gi|251776011|gb|ACT18592.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M21]
Length = 396
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L GY+V + + + + +E L+L D +MP MDG+
Sbjct: 11 RVLIVDDEKVILDLTAIILKNRGYQVFTALSALEGLETIDKERPELVLLDYMMPNMDGLT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ PD V+ TG + + + + + KPF+ +DLV + +L ++
Sbjct: 71 ALKEIRRSYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLR 128
>gi|4732058|gb|AAD28578.1|AF121341_2 putative response regulator CelR2 [Rhizobium leguminosarum]
Length = 457
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T L+KP + L++ V LL
Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 66.7 bits (163), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + + +IKAL +V++ ++ +A + E F L++ + + D + L
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + + +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADNMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275
>gi|21909780|ref|NP_664048.1| two-component response regulator [Streptococcus pyogenes MGAS315]
gi|50913656|ref|YP_059628.1| response regulator CsrR [Streptococcus pyogenes MGAS10394]
gi|56808741|ref|ZP_00366459.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Streptococcus pyogenes M49 591]
gi|71902940|ref|YP_279743.1| response regulator [Streptococcus pyogenes MGAS6180]
gi|71910096|ref|YP_281646.1| response regulator [Streptococcus pyogenes MGAS5005]
gi|94987913|ref|YP_596014.1| response regulator [Streptococcus pyogenes MGAS9429]
gi|94989788|ref|YP_597888.1| response regulator CsrR [Streptococcus pyogenes MGAS10270]
gi|94993673|ref|YP_601771.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
gi|139474380|ref|YP_001129096.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
gi|3599371|gb|AAC64935.1| CsrR [Streptococcus pyogenes]
gi|21903965|gb|AAM78851.1| two-component response regulator [Streptococcus pyogenes MGAS315]
gi|50902730|gb|AAT86445.1| Response regulator CsrR [Streptococcus pyogenes MGAS10394]
gi|71802035|gb|AAX71388.1| response regulator [Streptococcus pyogenes MGAS6180]
gi|71852878|gb|AAZ50901.1| response regulator [Streptococcus pyogenes MGAS5005]
gi|84578944|dbj|BAE72910.1| two-component response regulator mutated protein M3-2
[Streptococcus pyogenes]
gi|94541421|gb|ABF31470.1| response regulator [Streptococcus pyogenes MGAS9429]
gi|94543296|gb|ABF33344.1| Response regulator CsrR [Streptococcus pyogenes MGAS10270]
gi|94547181|gb|ABF37227.1| Response regulator CsrR [Streptococcus pyogenes MGAS10750]
gi|134272627|emb|CAM30894.1| response regulator protein [Streptococcus pyogenes str. Manfredo]
gi|190350983|gb|ACE75888.1| CovR [Streptococcus pyogenes]
gi|190350986|gb|ACE75890.1| CovR [Streptococcus pyogenes]
gi|190350989|gb|ACE75892.1| CovR [Streptococcus pyogenes]
gi|190350992|gb|ACE75894.1| CovR [Streptococcus pyogenes]
gi|190350995|gb|ACE75896.1| CovR [Streptococcus pyogenes]
gi|190350998|gb|ACE75898.1| CovR [Streptococcus pyogenes]
gi|190351001|gb|ACE75900.1| CovR [Streptococcus pyogenes]
gi|190351004|gb|ACE75902.1| CovR [Streptococcus pyogenes]
gi|190351007|gb|ACE75904.1| CovR [Streptococcus pyogenes]
gi|190351010|gb|ACE75906.1| CovR [Streptococcus pyogenes]
gi|190351013|gb|ACE75908.1| CovR [Streptococcus pyogenes]
gi|190351016|gb|ACE75910.1| CovR [Streptococcus pyogenes]
gi|190351019|gb|ACE75912.1| CovR [Streptococcus pyogenes]
gi|190351022|gb|ACE75914.1| CovR [Streptococcus pyogenes]
gi|190351025|gb|ACE75916.1| CovR [Streptococcus pyogenes]
gi|190351028|gb|ACE75918.1| CovR [Streptococcus pyogenes]
gi|190351031|gb|ACE75920.1| CovR [Streptococcus pyogenes]
gi|190351034|gb|ACE75922.1| CovR [Streptococcus pyogenes]
gi|190351037|gb|ACE75924.1| CovR [Streptococcus pyogenes]
gi|190351040|gb|ACE75926.1| CovR [Streptococcus pyogenes]
gi|190351043|gb|ACE75928.1| CovR [Streptococcus pyogenes]
gi|190351046|gb|ACE75930.1| CovR [Streptococcus pyogenes]
gi|190351049|gb|ACE75932.1| CovR [Streptococcus pyogenes]
gi|190351052|gb|ACE75934.1| CovR [Streptococcus pyogenes]
gi|190351055|gb|ACE75936.1| CovR [Streptococcus pyogenes]
gi|190351058|gb|ACE75938.1| CovR [Streptococcus pyogenes]
gi|190351061|gb|ACE75940.1| CovR [Streptococcus pyogenes]
gi|254826682|dbj|BAH86623.1| response regulator [Streptococcus pyogenes]
gi|254826685|dbj|BAH86625.1| response regulator [Streptococcus pyogenes]
gi|254826688|dbj|BAH86627.1| response regulator [Streptococcus pyogenes]
gi|254826691|dbj|BAH86629.1| response regulator [Streptococcus pyogenes]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|325105821|ref|YP_004275475.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
gi|324974669|gb|ADY53653.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
Length = 232
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+++LL EDD ++ L L G ++V C NG F + + D++MP+ D
Sbjct: 3 KKRVLLVEDDPNLGAILEDYLSLKGKFDVKLCKNGEEGLKAFTSNEFDICILDVMMPKKD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + +++ + ++F T + ++ ++KPF + +L+ +N LL
Sbjct: 63 GLSLGKDIRKINSTVPIIFATAKGMLEDKTEAFGLGGDDYITKPFRIEELLLRINALLKR 122
>gi|299146270|ref|ZP_07039338.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
gi|298516761|gb|EFI40642.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 3_1_23]
Length = 1411
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL ED++++R ++ L + Y V+ +NG+ A++ V +E L++TDI+MP +DG+
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T V + + KPF++ L+ + LL
Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268
Query: 121 K 121
+
Sbjct: 1269 R 1269
>gi|160883701|ref|ZP_02064704.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
gi|156110786|gb|EDO12531.1| hypothetical protein BACOVA_01673 [Bacteroides ovatus ATCC 8483]
Length = 1411
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL ED++++R ++ L + Y V+ +NG+ A++ V +E L++TDI+MP +DG+
Sbjct: 1150 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1208
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T V + + KPF++ L+ + LL
Sbjct: 1209 ELCALIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1268
Query: 121 K 121
+
Sbjct: 1269 R 1269
>gi|149279260|ref|ZP_01885392.1| two-component system response regulator [Pedobacter sp. BAL39]
gi|149230022|gb|EDM35409.1| two-component system response regulator [Pedobacter sp. BAL39]
Length = 249
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 54/114 (47%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+AEDD + + L + GY+V NG A + F LL+ D++MP M G+E+ R
Sbjct: 29 IAEDDVKIAGLIRSGLEEQGYDVTVSTNGQVALQTFLDNDFQLLILDVMMPGMSGVEICR 88
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T ++ + L KPFH ++L+ + LL
Sbjct: 89 SLRQQQREMPILMLTALGSIDDKVTGLSSGADDYLLKPFHFKELLARIEALLRR 142
>gi|124515849|gb|EAY57358.1| putative two component transcriptional regulator, winged helix
family [Leptospirillum rubarum]
Length = 231
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D+ L + +EV + NG R L++ D+++P +D
Sbjct: 1 MGRKILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + R + L + V+ +T + + KPF+ ++L+ + +L
Sbjct: 61 GLSVNRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|119897266|ref|YP_932479.1| two-component response regulatory protein [Azoarcus sp. BH72]
gi|119669679|emb|CAL93592.1| probable two-component response regulatory protein [Azoarcus sp.
BH72]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAEDD + +++AL + GY V NGA A V +PF LL+ D+ +P + GIE
Sbjct: 2 RILLAEDDPVIADGIVRALKRGGYAVDHVGNGAEADTAVASQPFDLLILDLGLPRLPGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R L V+ +T V L+KPF L +L V L
Sbjct: 62 VLKRLRARKSALPVLILTAQDGVEDRVRGLDAGADDYLTKPFALPELEARVRALTRR 118
>gi|126700337|ref|YP_001089234.1| two-component response regulator [Clostridium difficile 630]
gi|254976316|ref|ZP_05272788.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255093701|ref|ZP_05323179.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255101892|ref|ZP_05330869.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255307761|ref|ZP_05351932.1| two-component response regulator [Clostridium difficile ATCC 43255]
gi|255315453|ref|ZP_05357036.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255518116|ref|ZP_05385792.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255651233|ref|ZP_05398135.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260684297|ref|YP_003215582.1| two-component response regulator [Clostridium difficile CD196]
gi|260687956|ref|YP_003219090.1| two-component response regulator [Clostridium difficile R20291]
gi|115251774|emb|CAJ69609.1| Two-component response regulator [Clostridium difficile]
gi|260210460|emb|CBA64917.1| two-component response regulator [Clostridium difficile CD196]
gi|260213973|emb|CBE06070.1| two-component response regulator [Clostridium difficile R20291]
Length = 234
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+ KIL+A+D+ ++R + L GYEV+ NG A + V L++ D+VM
Sbjct: 1 MNKEIPKKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVM 59
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P G E ++F+T + + LSKPF +L++ V
Sbjct: 60 PVKTGFVACNEIREKT-TAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKS 118
Query: 117 LLTI 120
LL
Sbjct: 119 LLRR 122
>gi|108758269|ref|YP_629388.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus
xanthus DK 1622]
gi|6578851|gb|AAF18103.1|AF204400_3 FrgC [Myxococcus xanthus]
gi|108462149|gb|ABF87334.1| sigma-54 dependent DNA-binding response regulator FrgC [Myxococcus
xanthus DK 1622]
Length = 466
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+ +LL +DD + + L L +AG + +G A + +P ++++D+ M
Sbjct: 1 MNESLRGTVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P MDG+++ PD+ V+ +T V L ++ A + KPF +++ V +
Sbjct: 61 PGMDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFDREEILFTVRK 120
Query: 117 LL 118
L
Sbjct: 121 AL 122
>gi|42520116|ref|NP_966031.1| response regulator PleD [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|42409853|gb|AAS13965.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 460
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D + L L Y V+ ++G A D V ++ ++L DI+MP+M+
Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + L + ++ +T L+KP + L + + L
Sbjct: 61 GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ++D + L + + ++ A E + L+++D+ + DG+ L
Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ + L+ P +L+ VN + K
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKRK 277
>gi|312130582|ref|YP_003997922.1| histidine kinase [Leadbetterella byssophila DSM 17132]
gi|311907128|gb|ADQ17569.1| histidine kinase [Leadbetterella byssophila DSM 17132]
Length = 1365
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++++R+ + ++L K Y + NG + KVR L++TDI+MP DGI L
Sbjct: 1107 VLIVEDNEEIRQVISQSLEKT-YAINEAANGQEGWQKVRSLLPDLVITDIMMPVEDGITL 1165
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + V+ +T A+ + + L+KPFH L ++ +L +
Sbjct: 1166 LRNIKQNLETNHIPVLLLTARTAMESVIEGLQSGSDDYLTKPFHPEVLSLKIRNILESR 1224
>gi|298290736|ref|YP_003692675.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296927247|gb|ADH88056.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 233
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R +++AL AGY V +G + EP+ ++ DI +P+MDG+
Sbjct: 2 RLLVVEDDPDLNRQMVEALTDAGYAVDRAYDGEEGHFLGETEPYDAIVLDIGLPKMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFH+ +++ + LL
Sbjct: 62 VLEAWRREGRKMPVLILTARDRWSDKVQGFDAGADDYVAKPFHMEEVLARIRALLRR 118
>gi|209558840|ref|YP_002285312.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
gi|209540041|gb|ACI60617.1| Response regulator CsrR [Streptococcus pyogenes NZ131]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEGNGREGLKTALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|167764904|ref|ZP_02437025.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
gi|167697573|gb|EDS14152.1| hypothetical protein BACSTE_03296 [Bacteroides stercoris ATCC 43183]
Length = 1473
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ ++R F+ + + V+ NG +K ++ ++++D++MPE DG
Sbjct: 1209 KETILIVEDNQELRFFIKTIFIQH-FNVIEAENGIIGLEKSKKYLPDIIISDVMMPEKDG 1267
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ R E + ++ +T + + + ++KPF L + L+
Sbjct: 1268 IEMVRELREDMSTSHIPIVMLTAKSTIESRIEGLESGADDYITKPFSAAYLKARIFNLID 1327
Query: 120 IK 121
+
Sbjct: 1328 QR 1329
>gi|86138909|ref|ZP_01057481.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. MED193]
gi|85824556|gb|EAQ44759.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseobacter sp. MED193]
Length = 229
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ NG V E+ +++ D +MP + GIE
Sbjct: 7 TVLIIEDELAQREVLAYNLEADGFRVIRAENGEEGLLLVEEDMPDIIVLDWMMPNLSGIE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 67 VCRRLKTRPETRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125
>gi|89894512|ref|YP_517999.1| hypothetical protein DSY1766 [Desulfitobacterium hafniense Y51]
gi|219668942|ref|YP_002459377.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|89333960|dbj|BAE83555.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539202|gb|ACL20941.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 232
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L AG++V +G ++ F L++ DI++P +DG+
Sbjct: 2 KRILIVEDDSSIAELERDYLEVAGFDVTLSTDGVEGLRAIQNNEFDLIILDIMLPGLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + E D D+ V+ ++ + ++KPF +LV V +
Sbjct: 62 EILKSMKE-DKDIPVLLVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKAHIE 117
>gi|290352217|dbj|BAI78819.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVFVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|288925550|ref|ZP_06419483.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
kinase/response regulator, hybrid (one-component system)
[Prevotella buccae D17]
gi|288337766|gb|EFC76119.1| LOW QUALITY PROTEIN: putative two-component system sensor histidine
kinase/response regulator, hybrid (one-component system)
[Prevotella buccae D17]
Length = 865
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+L+ ED+DD RRF+ ++L + Y V NG A + +E ++++D++MP MDG+
Sbjct: 618 HTLLIVEDNDDFRRFIKESLQEE-YTVFEAGNGQEALELTAQESIDMIVSDVMMPVMDGL 676
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+L R + V+ +T A + ++KPF++ L ++ +L
Sbjct: 677 QLCHRIKTDINFSHIPVILLTARTADEHVISGLKEGADEYITKPFNMEILKIKIRKL 733
>gi|229169569|ref|ZP_04297273.1| Two-component response regulator [Bacillus cereus AH621]
gi|228613959|gb|EEK71080.1| Two-component response regulator [Bacillus cereus AH621]
Length = 242
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++R+ + L GYEV+ +G + VR+ L++ DI+MP++DGI
Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQAGDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 74 MCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129
>gi|251798473|ref|YP_003013204.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247546099|gb|ACT03118.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 230
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD + GYE C++G + + L++ DI +P M
Sbjct: 1 MT-RILIVEDDPYIAELQKDYFALHGYEAEICHDGQDGLKQALSGDYDLIILDIQLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + E D+ ++ ++ ++KPF +LV L
Sbjct: 60 GFEICKTIRERL-DVPILIVSAKNEELDKIRGFGFGADDFVTKPFSPNELVARAKAHLAR 118
>gi|241204117|ref|YP_002975213.1| response regulator PleD [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858007|gb|ACS55674.1| response regulator receiver modulated diguanylate cyclase
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 457
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T L+KP + L++ V LL
Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + + ++KAL +V++ ++ +A + E F L++ + + D + L
Sbjct: 158 VLLVDGRANSQERIVKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + + +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275
>gi|148241355|ref|YP_001226512.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147849665|emb|CAK27159.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 260
Score = 143 bits (362), Expect = 9e-33, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L++ D+++P +D
Sbjct: 1 MKPCILLIEDDRDMRELVAGNLEHSGFDVQKADDGIKGQALALQYIPDLIVLDLMLPRVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R + ++ +T A L+KPF L +L+ V LL
Sbjct: 61 GLTLCQRLRRDDRTAQIPILMLTALAGTKDKVTGFNSGADDYLTKPFELEELLARVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|330988050|gb|EGH86153.1| sensory box protein/response regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 705
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEHSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIKN 122
LL +K+
Sbjct: 121 NLLRLKS 127
>gi|306837815|ref|ZP_07470678.1| Protein petR [Brucella sp. NF 2653]
gi|306407111|gb|EFM63327.1| Protein petR [Brucella sp. NF 2653]
Length = 235
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 15 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 75 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 130
>gi|302185041|ref|ZP_07261714.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae 642]
Length = 222
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|300770271|ref|ZP_07080150.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33861]
gi|300762747|gb|EFK59564.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33861]
Length = 231
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QKILLAEDD ++ L L G ++V C +G A ++ + L + D++MP+ DG
Sbjct: 5 QKILLAEDDPNLGELLKDYLELKGKFDVTLCQDGEEALVAFHKDQYDLCILDVMMPKKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + + V++ T + + ++KPF + +L+ +N LL
Sbjct: 65 FSLGKDIRKTNTTVPVIYATAKGMMEDKTQAFELGGDDYITKPFRVEELLLRINALLKRS 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|256394226|ref|YP_003115790.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256360452|gb|ACU73949.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 242
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +RR L +ALG +G+ V + +G +A + ++ D+ MP + G++
Sbjct: 9 RLLVVDDDPALRRGLGRALGLSGFAVETAADGQAALAVLGGGGVDAVVLDVSMPGISGVD 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D+ V+ ++ VA A + KPF +L V LL
Sbjct: 69 VVRRLRRQGDDVPVLMLSALDDVADRIAGLAAGADDYVVKPFSTAELELRVRALLRR 125
>gi|226949656|ref|YP_002804747.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|226844282|gb|ACO86948.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 235
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ D++MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGEDYHMVIMDVMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 61 DGIEAMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|189464563|ref|ZP_03013348.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
17393]
gi|189438353|gb|EDV07338.1| hypothetical protein BACINT_00906 [Bacteroides intestinalis DSM
17393]
Length = 1370
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+A+D++++RR++ + L Y + CNNG A++++ ++ L++D++MPEMDG
Sbjct: 1101 KYRILIADDNEEIRRYIRQELTP-DYHITECNNGQEAFEQIIKDAPDALISDVMMPEMDG 1159
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L R+ + L + V+ +T N ++ ++KPF++ L + ++
Sbjct: 1160 MTLCRKIRQNILVSHIPVILLTAKINEESNLEALEGGVDAYITKPFNIDVLKKTIRNVI 1218
>gi|188588155|ref|YP_001921219.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
gi|188498436|gb|ACD51572.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
Length = 235
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + L GY V +NG D + E L + DI+MP+MDGI++
Sbjct: 6 VLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIMMPKMDGIQM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ ++ + ++KPF+ +L+ VN L
Sbjct: 66 TMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRR 120
>gi|94991797|ref|YP_599896.1| response regulator CsrR [Streptococcus pyogenes MGAS2096]
gi|94545305|gb|ABF35352.1| Response regulator CsrR [Streptococcus pyogenes MGAS2096]
Length = 228
Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|332881353|ref|ZP_08449003.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332680729|gb|EGJ53676.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 1328
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++ +R F+ + L + V + +NG A D +R+E L+++D++MPEM+G EL
Sbjct: 1056 ILIVEDEESIRNFMKERLSPL-FIVETASNGKEALDIIRKEHIDLVISDVMMPEMNGYEL 1114
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++F+T + + KPF L ++ LL +
Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173
>gi|325270180|ref|ZP_08136787.1| DNA-binding response regulator [Prevotella multiformis DSM 16608]
gi|324987481|gb|EGC19457.1| DNA-binding response regulator [Prevotella multiformis DSM 16608]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KILL EDD+++ L + L GY+ C +G Y + + + + D++MP+ DG
Sbjct: 4 NLKILLCEDDENLGTLLSEYLQAKGYQADLCPDGEVGYRAFLKNKYDICVLDVMMPKKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + D+ ++F+T + ++KPF + +LV + +L
Sbjct: 64 FTLAQEIRQANTDVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|315647351|ref|ZP_07900464.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277553|gb|EFU40882.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ ++R L L K Y + NG+ A +R++ L++ D+++P+M+G
Sbjct: 2 KTILVVDDEPNIREVLASYLLKEHYLTLEAANGSEALGYMRKQAVDLVILDLMLPDMEGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + +M +T + A + KPF R+++ + +L
Sbjct: 62 RVCQEIR-TFSSVPIMMLTAKVTQSSRIGGFAAGADDYIVKPFDPREVMARIKAVLRR 118
>gi|300813185|ref|ZP_07093559.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300495843|gb|EFK30991.1| response regulator ArlR [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 237
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ RF+ L GYE V NNG A D+ E F +L D+++P+++G+E
Sbjct: 3 KILIVEDEKNLARFVELELQHEGYETVVENNGRKALDRALSEDFDAILLDLMLPDLNGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T +V + KPF + +L+ + +L
Sbjct: 63 IARRVRQ-SKATPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|298241004|ref|ZP_06964811.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554058|gb|EFH87922.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ +R F + L AGY + +G +A + E L + D+ +P+M G+++
Sbjct: 3 VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFEEHKPDLAIIDLNLPKMSGLDV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + ++ +T + + + KPF+ LV V LL
Sbjct: 63 CKAIR-TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115
>gi|290352269|dbj|BAI78845.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L ++++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLELMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|281181543|dbj|BAI57873.1| two-component regulator protein [Escherichia coli SE15]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|222528319|ref|YP_002572201.1| winged helix family two component transcriptional regulator
[Caldicellulosiruptor bescii DSM 6725]
gi|222455166|gb|ACM59428.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor bescii DSM 6725]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED + + + L + GY V +G + ++ + L++ DI++P++DGI
Sbjct: 2 RILVIEDQKSLANTIARRLQEVGYSVDMALDGQEGLNFIQTASYDLIILDIMLPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ +T ++ L KPF +L+ V LL
Sbjct: 62 LLKLVRNKGVQTPVLCLTAKDSIEDRVTGLDAGADDYLVKPFSFDELLARVRALLRR 118
>gi|148977298|ref|ZP_01813912.1| probable transcriptional regulator SyrB [Vibrionales bacterium
SWAT-3]
gi|145963411|gb|EDK28675.1| probable transcriptional regulator SyrB [Vibrionales bacterium
SWAT-3]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L + L GY V + + G +A + ++ P L+L D+++P +
Sbjct: 1 MMSRVLVVDDDIQLCELLGEVLENEGYHVDTVHCGEAALEFIQSNPVDLVLLDVMLPNLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ARR + ++ +T A D + ++KPF++ +L+ + +L
Sbjct: 61 GIQVARRICQRFA-TPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 119
>gi|99081098|ref|YP_613252.1| two component transcriptional regulator [Ruegeria sp. TM1040]
gi|99037378|gb|ABF63990.1| two component transcriptional regulator, winged helix family
[Ruegeria sp. TM1040]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ NG A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 67 ICRRLKTRTDTRSIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125
>gi|71899946|ref|ZP_00682093.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|71730309|gb|EAO32393.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ +R + AL K +E + ++ A + + L+L D ++P
Sbjct: 1 MQKRVLIVDDEVAIRDMVAYALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL RR + L ++ ++ +T + + KPF R+L+ + ++
Sbjct: 61 GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|323482946|ref|ZP_08088344.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323691625|ref|ZP_08105888.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
gi|323403726|gb|EGA96026.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323504351|gb|EGB20150.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD+D+R + L Y++ +G + ++ L++ DI+MP + G
Sbjct: 3 NANILIIEDDEDIREGIRILLESEDYQITEAADGWEGLRLLSDDT-DLVILDIMMPGISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + + V+F+T A + L+KPF +L+ V L
Sbjct: 62 LKTCEEIRK-TSFVPVLFLTAKAQESDKLIGLMAGGDDYLTKPFSYAELLGRVKAQLRRY 120
Query: 122 N 122
+
Sbjct: 121 H 121
>gi|290352169|dbj|BAI78795.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|228935978|ref|ZP_04098788.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228823746|gb|EEM69568.1| hypothetical protein bthur0009_44230 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L +++ ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQIDVEHSGETGLQMALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAI-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|229112135|ref|ZP_04241678.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
gi|228671458|gb|EEL26759.1| hypothetical protein bcere0018_43780 [Bacillus cereus Rock1-15]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|222526878|ref|YP_002571349.1| winged helix family two component transcriptional regulator
[Chloroflexus sp. Y-400-fl]
gi|222450757|gb|ACM55023.1| two component transcriptional regulator, winged helix family
[Chloroflexus sp. Y-400-fl]
Length = 234
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + + L G+ V +G A R L++ D+++P +DGIE
Sbjct: 5 TILVVDDEQPIVDLVSSYLTNEGFVVHRAYDGPGALALARSVKPDLVVLDVMLPGLDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + V+ +T A + L+KPF R+LV V +L
Sbjct: 65 VCRQLHRDTS-VFVLMLTARADEIDKLIGLSVGADDYLTKPFSPRELVARVKAILRR 120
>gi|167560951|ref|ZP_02353867.1| DNA-binding response regulator [Burkholderia oklahomensis EO147]
Length = 159
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ +++ L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|197118229|ref|YP_002138656.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197087589|gb|ACH38860.1| winged-helix transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ L L + GY+ + +G L++ D+++P M G
Sbjct: 2 ETILIIEDERDLAELLAFNLEREGYKTIIAADGIEGLANAGHCHPDLIILDLMLPGMLGT 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + V+ +T + KPF R+L V +L
Sbjct: 62 EVCKNLKKSERTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELNLRVKAVLRR 121
Query: 121 KN 122
N
Sbjct: 122 SN 123
>gi|71907245|ref|YP_284832.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
gi|71846866|gb|AAZ46362.1| PAS/PAC sensor hybrid histidine kinase [Dechloromonas aromatica
RCB]
Length = 873
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL ED+ + + L + G EV +G A V E + ++L D+ MPEMDG+
Sbjct: 752 RRVLLVEDEPINQEVAGELLREVGLEVELAADGLQAVQLVVENDYDVILMDMQMPEMDGL 811
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R +L + ++ +T A A + KP + L + R LT+
Sbjct: 812 EATRAIRKLPGRQTVPILAMTANAFAEDRERCMASGMNDFIPKPVNPDVLYATLLRWLTV 871
Query: 121 KN 122
++
Sbjct: 872 RS 873
>gi|89896827|ref|YP_520314.1| hypothetical protein DSY4081 [Desulfitobacterium hafniense Y51]
gi|89336275|dbj|BAE85870.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 234
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + K+LL +D++ + R + + L + YE++ +NG A + ++E L++ D+++P
Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ R E + ++ ++ + L KPF +L V LL
Sbjct: 61 IDGYEVCRTIRE-TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|163940379|ref|YP_001645263.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163862576|gb|ABY43635.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 221
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y VV ++G + ++ F L+L D++MP ++G
Sbjct: 3 NYHILVVEDDQEIQELIKQFLMTQQYTVVVASDGLEGMTQFNKQSFDLILLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+++ ++ ++ +T ++KPF L+ V +L
Sbjct: 63 FEVSKMIRSQ-SNVPIIMLTALEEEEDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRR 120
>gi|145219952|ref|YP_001130661.1| two component transcriptional regulator [Prosthecochloris
vibrioformis DSM 265]
gi|145206116|gb|ABP37159.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeovibrioides DSM 265]
Length = 236
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD ++ + + L KAGY+ + NG A+D++ F L+L D+++P +DG E+
Sbjct: 7 LVVEDDRNLAKLVGYNLEKAGYKCLFSENGEDAFDQLSRRSFDLVLLDVMLPGIDGFEVC 66
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ D+ ++ +T + KPF R+L + +L
Sbjct: 67 RKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123
>gi|299534474|ref|ZP_07047807.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
ZC1]
gi|298730102|gb|EFI70644.1| transcriptional regulatory protein srrA [Lysinibacillus fusiformis
ZC1]
Length = 233
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL +D+ M L L + + + A D + EE L+L DI+MPEM+G
Sbjct: 2 KTILCIDDEPRMLDLLTLYLEPL-FLCRAMTSIQEALDFLEEEHVDLVLLDIMMPEMNGW 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D+ ++ +T A + KPF +L+ ++ +L
Sbjct: 61 QVCQEIRKFW-DVPIIMLTAKGEHADIVKGLNLGADDYILKPFDEEELLARIHAVLRR 117
>gi|298528361|ref|ZP_07015765.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298512013|gb|EFI35915.1| multi-sensor hybrid histidine kinase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 1175
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 1 MNQK----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++K IL+ +D +R K L Y V++ +NG A ++ L+L D++M
Sbjct: 1 MSEKTLNTILVVDDTQTIRHITKKTLEADNYVVLAASNGPEALSIAADKIPDLILLDVMM 60
Query: 57 PEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
P+MDG E+ R D+ V+FIT + KPFH L+ V
Sbjct: 61 PDMDGFEVCSRLKADICTRDIPVVFITASGNKEHEVKGLDLGAEDFVHKPFHEGVLLARV 120
Query: 115 NRLLTI 120
++L
Sbjct: 121 GQILRR 126
Score = 92.1 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 8/123 (6%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-----DKVREEPFSLLLTDIVMPEMD 60
L+ +D+ R L G G NG++A K +PF L + D+ MP+MD
Sbjct: 675 LIVDDNSTNREILRVRFGSWGMRPGEAANGSAALSMLHQAKAENDPFVLAVLDMQMPDMD 734
Query: 61 GIELARRATELD--PDLKVMFI-TGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G L R E D +++ + + + + +L+KP +L + ++
Sbjct: 735 GETLGRNIKEDGQLKDTRLIMMSSATGQTGDSRRLHETGFDSILNKPVLPSELYASLEKI 794
Query: 118 LTI 120
L
Sbjct: 795 LAR 797
Score = 90.2 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+AED+ ++ + L K G + NG A + P+ L+L D+ MPEM G
Sbjct: 824 KARILVAEDNMVNQQVALGILKKMGLRADAVANGQEALHALENIPYDLVLMDVQMPEMGG 883
Query: 62 IELARRATELDPDLKVMFITGFAAV----ALNPDSNAPKNAK 99
+E RR ++ V ++ +
Sbjct: 884 LEATRRIRSMEHGTPVKPLSTTGSPLGCFTGQAGGMEHGAED 925
Score = 60.9 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 6/48 (12%), Positives = 17/48 (35%)
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T A +KP + +L + + L+ +
Sbjct: 966 RIPIIAMTAGAMQEDRERCIEAGMDDYTAKPVNPDELARVLEKWLSKE 1013
>gi|282857214|ref|ZP_06266458.1| two component transcriptional regulator, winged helix family
[Pyramidobacter piscolens W5455]
gi|282585000|gb|EFB90324.1| two component transcriptional regulator, winged helix family
[Pyramidobacter piscolens W5455]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + L G+ V +G R E ++LLL D+++P + G
Sbjct: 2 RKILIVEDDRPIAELERDYLEANGFAVEIAFDGREGLRLARTEEYALLLLDVMLPGISGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++ V+ +T + KPF +LV + I
Sbjct: 62 EICREVRK-SKNVPVVMVTARKDDVDKIRGLGLGADDYVVKPFSPSELVARCRAHIQI 118
>gi|255325893|ref|ZP_05366985.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
gi|255297105|gb|EET76430.1| alkaline phosphatase synthesis transcriptional regulatory protein
phoP [Corynebacterium tuberculostearicum SK141]
Length = 234
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++ L +L +EV S N+G A RE + D++MP MDG E
Sbjct: 8 KVLVVDDEPNIVELLTVSLKFQDFEVYSANSGNEALRIAREVNPDAYILDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + D V+++T V ++KPF L +++ + ++
Sbjct: 68 LLGKLRQEGLDGPVLYLTAKDGVDQRIHGLTIGADDYVTKPFSLEEVITRLRVIMRR 124
>gi|239502568|ref|ZP_04661878.1| AdeR [Acinetobacter baumannii AB900]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++IL+ ED+ D+ + + L + G V+ NG A + +P L+L DI +PE++G
Sbjct: 12 DKQILVVEDEYDIGDIIEQYLKREGMRVIRAMNGKQAIEIHASQPIDLILLDIKLPELNG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + + V+ +T + + KPF+ ++V V +L
Sbjct: 72 WEVLSKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRRT 130
Query: 122 N 122
+
Sbjct: 131 H 131
>gi|257057097|ref|YP_003134929.1| response regulator with CheY-like receiver domain-containing
protein and winged-helix DNA-binding domain-containing
protein [Saccharomonospora viridis DSM 43017]
gi|256586969|gb|ACU98102.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein
[Saccharomonospora viridis DSM 43017]
Length = 221
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AED+ + F+ K L G+ V +G +AY+ F L++ DI +P MD
Sbjct: 1 MS-RILVAEDEPRIAAFVNKGLTANGFTVTVVEDGQAAYEYALTGSFDLMVLDIGLPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G + R+ + V+ +T +V + KPF +L+ V
Sbjct: 60 GFTVLRKLRAERCPIPVIILTARDSVQDTVAGLEGGADDYMPKPFRFEELLARVR 114
>gi|227529808|ref|ZP_03959857.1| two component response regulator [Lactobacillus vaginalis ATCC
49540]
gi|227350292|gb|EEJ40583.1| two component response regulator [Lactobacillus vaginalis ATCC
49540]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ILLAED++ + R L A+ ++GY+V + NG +A + ++ + ++ DI+MP +G
Sbjct: 4 KMRILLAEDEEQLARVLKMAMEQSGYQVDAVENGQAAVELSQKNAYDAIILDIMMPIKNG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +M +T A + L+KPF L++L+ + L +
Sbjct: 64 IEALKEIRARGDRTYIMMLTAMAEEDDRVNGLDSGADDYLTKPFSLKELLARLRS-LERR 122
>gi|189464788|ref|ZP_03013573.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
17393]
gi|189437062|gb|EDV06047.1| hypothetical protein BACINT_01132 [Bacteroides intestinalis DSM
17393]
Length = 1288
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ D+R FL + Y ++ NG A++ +++E L ++D++MP+MDG
Sbjct: 1040 KKSILIVDDNKDLRNFLKCSFENQ-YYILEAGNGNEAWELLQKESPELTISDVMMPDMDG 1098
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + + V+ +T + + ++KPF + L + L+
Sbjct: 1099 FELCKLIKSTFETSHIPVILLTSLCDKSDQLEGLGLGAEDYITKPFDISLLEQRIKSLMR 1158
Query: 120 IK 121
+
Sbjct: 1159 NR 1160
>gi|83592618|ref|YP_426370.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83575532|gb|ABC22083.1| two component transcriptional regulator, winged helix family
[Rhodospirillum rubrum ATCC 11170]
Length = 249
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD R L L K GY+V +G S ++ L+L DI +P +DG
Sbjct: 3 NHHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++L R ++ V+ +TG + ++KPF++R+L+ LL
Sbjct: 63 LQLLREIR-HQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRR 120
>gi|308273635|emb|CBX30237.1| Alkaline phosphatase synthesis transcriptional regulatory protein
phoP [uncultured Desulfobacterium sp.]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D++D+ + L GY V +G A EPF L++ D+++P + G
Sbjct: 14 NIRILVVDDEEDITELIRYNLASDGYTVKCAYSGEEAVKLAMSEPFDLIVLDLMLPGIGG 73
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I++A+R + ++ ++ +T + ++KPF + L ++ +L
Sbjct: 74 IDVAKRLRSVHNTINIPIIMLTAKSEETDIISGLTL-ADDYVTKPFSPKILSARISAILR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|271964907|ref|YP_003339103.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270508082|gb|ACZ86360.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ M L + L G+ V ++G R+ + +++ DI++P + G
Sbjct: 2 RVLVVEDERRMAAALQRGLQAEGFAVDLAHDGEDGLHLARQGDYDVVVLDIMLPRLSGYN 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ ++ D L+KPF LV + LL
Sbjct: 62 VCKQLRAEENWVPILMLSAKDGEYDMADGLDLGADDYLTKPFSYVVLVARLRALLRR 118
>gi|225848484|ref|YP_002728647.1| transcriptional activator protein CopR [Sulfurihydrogenibium
azorense Az-Fu1]
gi|225643352|gb|ACN98402.1| transcriptional activator protein CopR [Sulfurihydrogenibium
azorense Az-Fu1]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD ++ + K L + G+ V + E + +++ DI++P+M G E
Sbjct: 2 KVLIIEDDKELSHLIAKRLKEEGFAVQQAFDAEEGMSYATYEEYDVIVLDIMLPKMSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ + L+KPF +L+ +N L+
Sbjct: 62 VIRQLREKKVKTPILVLSAKGEIEDKVKGLQLGADDYLTKPFSFPELIARINALIRR 118
>gi|153813864|ref|ZP_01966532.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
gi|317502000|ref|ZP_07960184.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088182|ref|ZP_08337102.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848260|gb|EDK25178.1| hypothetical protein RUMTOR_00070 [Ruminococcus torques ATCC 27756]
gi|316896680|gb|EFV18767.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408838|gb|EGG88301.1| hypothetical protein HMPREF1025_00685 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD ++R + L GY V +G + + +E L + DI+MP MDGI
Sbjct: 5 HVLIVEDDKEIREGVQIYLQSQGYVVFQAADGIEGLEILEKEEIHLAIIDIMMPRMDGIR 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 65 MTMKLREKY-DFPVIMLSAKSEEVDKITGLNIGADDYVTKPFTPMELMARVNSQLRR 120
>gi|92116986|ref|YP_576715.1| two component transcriptional regulator [Nitrobacter hamburgensis
X14]
gi|91799880|gb|ABE62255.1| two component transcriptional regulator, winged helix family
[Nitrobacter hamburgensis X14]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNDRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARIRALLRR 118
>gi|330944587|gb|EGH46541.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. pisi str. 1704B]
gi|330954542|gb|EGH54802.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae Cit 7]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|260222272|emb|CBA31670.1| Response regulator mprA [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 248
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ EDD+ +R L L AG+ V S ++GA A + F ++ D+ +P +DGI
Sbjct: 18 HLLIVEDDELLRDGLCAQLVHAGHSVSSASDGAQAQGLLESTRFDGVVLDLGLPVVDGIA 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + L V+ +T V L+KPF++ +L+ + +L
Sbjct: 78 VLQWIRQRLAALPVLILTARDGVDDRVQGLNAGADDYLTKPFNMAELLARLQAMLRR 134
>gi|256848579|ref|ZP_05554020.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
gi|256714631|gb|EEU29611.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
Length = 244
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE VS NG A K+ P L++ D++MPEMDG+
Sbjct: 17 KILVVDDDKEIVQLLEIYVRNEGYEPVSAYNGKDALTKLNTTPDIGLVILDLMMPEMDGM 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R + D + ++ ++ A ++KPF+ +++ V LL
Sbjct: 77 EVIKRIRK-DSSIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 133
>gi|227874637|ref|ZP_03992800.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
gi|306817923|ref|ZP_07451661.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|227844846|gb|EEJ54992.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
gi|304649266|gb|EFM46553.1| response regulator [Mobiluncus mulieris ATCC 35239]
Length = 267
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL EDD + L +ALG+ GYEV + G +A +V +++ D+ +P+MD
Sbjct: 43 MT-KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMD 99
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR + ++ +T ++KPF L +L+ V LL
Sbjct: 100 GLDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRR 159
>gi|189466394|ref|ZP_03015179.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM
17393]
gi|189434658|gb|EDV03643.1| hypothetical protein BACINT_02769 [Bacteroides intestinalis DSM
17393]
Length = 1404
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 5/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L Y V+ NGA A D + + +++D++MP MDGIE
Sbjct: 1152 TILVVEDNADMRGYIRSILRDY-YNVLEATNGAEALDVLNNQSVDFIISDLMMPVMDGIE 1210
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL--T 119
L+RR E + + +T + +S + L KPF L+ + +L
Sbjct: 1211 LSRRVKEAFAISHIPFLMLTAKTSPETRLESYRTGVDEYLLKPFDETLLLTRIENILDNR 1270
Query: 120 IK 121
+
Sbjct: 1271 RR 1272
>gi|167579287|ref|ZP_02372161.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ +++ L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIVDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas
arsenicoxydans]
gi|133739760|emb|CAL62811.1| Putative transcriptional regulatory protein TctD [Herminiimonas
arsenicoxydans]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L +AL +AGY V +NG A + + ++L+L DI +P+MDG+
Sbjct: 2 RILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+ +T + ++KPF L + V L+
Sbjct: 62 VLRRLRERKSRVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRR 118
>gi|116511653|ref|YP_808869.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
SK11]
gi|116107307|gb|ABJ72447.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactococcus lactis subsp. cremoris SK11]
Length = 234
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58
M ++IL+ ED++ + L L GY V S +G S E+ ++L D ++P+
Sbjct: 13 MKRQILIIEDEESISNLLETELSFEGYNVFSAADGMSGLKIFEEKQEYLDVVLLDWMIPK 72
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR ++ + V+F+T V L+KPF++ +L+ + ++
Sbjct: 73 LDGLEVLRRMKKMTNKVPVIFVTARDYVGDKVAGLDAGADDYLTKPFNIEELMARLR-VI 131
Query: 119 TIKN 122
KN
Sbjct: 132 FRKN 135
>gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805]
gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805]
Length = 237
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+EV + +G + K ++ +++TD++MP +DG
Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFSKAQQMLPDVVITDVMMPRLDGYG 71
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + V+F+T A + KPF +LV V + +
Sbjct: 72 LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 131
>gi|325978470|ref|YP_004288186.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|325178398|emb|CBZ48442.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE
Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T A V L+KPF L++L+ + ++ +
Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|307299054|ref|ZP_07578856.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
gi|306915479|gb|EFN45864.1| two component transcriptional regulator, winged helix family
[Thermotogales bacterium mesG1.Ag.4.2]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + R L ++L + G+ +G PF +++ DI++P++ G +
Sbjct: 2 KILIVEDERSLGRLLKESLEREGFVAELAVDGEEGLYMALNGPFDVIVLDILLPKLTGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T ++ L KPF +R+LV + LL
Sbjct: 62 VLEKIRDSGSRIPVLMLTALDSIEDKVRGFDLGADDYLPKPFDIRELVVRIQSLLRR 118
>gi|295085550|emb|CBK67073.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1350
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ ++ FL K L + Y V+S ++G A + + L+++D++M EMDG EL
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + KPF L ++ LL +
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204
>gi|262406003|ref|ZP_06082553.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294806907|ref|ZP_06765732.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|262356878|gb|EEZ05968.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294445936|gb|EFG14578.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1342
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ ++ FL K L + Y V+S ++G A + + L+++D++M EMDG EL
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + KPF L ++ LL +
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204
>gi|237718991|ref|ZP_04549472.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229451769|gb|EEO57560.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1342
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ ++ FL K L + Y V+S ++G A + + L+++D++M EMDG EL
Sbjct: 1087 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1145
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + KPF L ++ LL +
Sbjct: 1146 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1204
>gi|237717236|ref|ZP_04547717.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229443219|gb|EEO49010.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1337
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D+ ++ FL K L + Y V+S ++G A + + L+++D++M EMDG EL
Sbjct: 1082 IMVVDDNPEILDFLSKILSEE-YFVISASSGEEALQILEKNNIDLIISDVMMEEMDGFEL 1140
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T + KPF L ++ LL +
Sbjct: 1141 CGKIKSNINISHVPVILLTAKTDTESKIKGLEAGADAYIEKPFSPFHLKAQLLNLLKKR 1199
>gi|229016961|ref|ZP_04173882.1| Two-component response regulator [Bacillus cereus AH1273]
gi|229027724|ref|ZP_04183908.1| Two-component response regulator [Bacillus cereus AH1272]
gi|229035338|ref|ZP_04189244.1| Two-component response regulator [Bacillus cereus AH1271]
gi|229160663|ref|ZP_04288656.1| Two-component response regulator [Bacillus cereus R309803]
gi|228622798|gb|EEK79631.1| Two-component response regulator [Bacillus cereus R309803]
gi|228727951|gb|EEL79021.1| Two-component response regulator [Bacillus cereus AH1271]
gi|228733586|gb|EEL84386.1| Two-component response regulator [Bacillus cereus AH1272]
gi|228744321|gb|EEL94402.1| Two-component response regulator [Bacillus cereus AH1273]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 6 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 66 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121
>gi|153941442|ref|YP_001391616.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|170754689|ref|YP_001781933.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|152937338|gb|ABS42836.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|169119901|gb|ACA43737.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|295319648|gb|ADG00026.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|126731908|ref|ZP_01747712.1| two component response regulator [Sagittula stellata E-37]
gi|126707735|gb|EBA06797.1| two component response regulator [Sagittula stellata E-37]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAEDD ++ K L + G+ V +G A L + D +MP MDG+
Sbjct: 2 KILLAEDDPKSADYICKGLKEQGFVVDWVADGREALTYCLYNDADLAIVDRMMPGMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + +L V+F+T + V D L KPFHL +L+ + +L +
Sbjct: 62 LVKALRAAKSNLPVIFLTALSDVDDRVDGLMAGGDDYLVKPFHLSELLARI-TVLGRR 118
>gi|299538494|ref|ZP_07051777.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
gi|298726081|gb|EFI66673.1| hypothetical protein BFZC1_20888 [Lysinibacillus fusiformis ZC1]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V A + E L + DI++P++D
Sbjct: 1 MN--ILVVDDEKEIADLIELYLKNENYHVFKFYTAQEALACIEHEKVDLAVLDIMIPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E + V+ +T + + ++KPF +LV V +
Sbjct: 59 GFTILRKIRETL-NFPVIMLTAKEEEIDKINGFSLGADDYITKPFRPLELVARVKAQIRR 117
>gi|296505136|ref|YP_003666836.1| two-component response regulator [Bacillus thuringiensis BMB171]
gi|296326188|gb|ADH09116.1| two-component response regulator [Bacillus thuringiensis BMB171]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G + +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQIALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|326204682|ref|ZP_08194538.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325985249|gb|EGD46089.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 238
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ I + ED+ +++ + L G++V +NG E L + DI++P +
Sbjct: 1 MSKQVIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLAYSSENIPDLFILDIMLPGI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R + + ++ +T + ++KPF +R+LV V L
Sbjct: 61 DGLEVCRNLKQTTNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELVARVKAL 120
Query: 118 LTIKN 122
N
Sbjct: 121 FRRVN 125
>gi|120402928|ref|YP_952757.1| multi-sensor signal transduction histidine kinase [Mycobacterium
vanbaalenii PYR-1]
gi|119955746|gb|ABM12751.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium vanbaalenii
PYR-1]
Length = 1385
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+A+D+ DMR +L + L GY V + +G A + +R ++++D++MP +DG
Sbjct: 626 SARVLVADDNADMREYLTRLLRSDGYRVDAVADGLEALEAIRAGAPDIVVSDVMMPRLDG 685
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ L V+ ++ A + L KPF +L+ V
Sbjct: 686 LGLVAELRADRRTAATPVLLLSARAGQQESISGLRAGADDYLVKPFAAAELLARVR 741
>gi|170721093|ref|YP_001748781.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169759096|gb|ACA72412.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 246
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|119511790|ref|ZP_01630892.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119463563|gb|EAW44498.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 378
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ L + L K GY+VV+ +NG + +L++ D +MP ++G+E+
Sbjct: 4 ILVIDDDISIQTLLKRMLEKQGYKVVAASNGEEGIAQAIAYQPALVICDWIMPGLNGLEV 63
Query: 65 ARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R DP+L +F+T ++A +SKP +L V L +
Sbjct: 64 CKRMK-TDPNLSTTFFIFLTSLDSIADRVKGLDAGADDFISKPIEQNELKARVRAGLRL 121
>gi|306833709|ref|ZP_07466836.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
gi|304424479|gb|EFM27618.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE
Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMATENAYDVMVMDIMMPVKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T A V L+KPF L++L+ + ++ +
Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|298250454|ref|ZP_06974258.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297548458|gb|EFH82325.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL ED+ M R + + L K Y V C +G S D + + +++ DI++P+ DGI
Sbjct: 2 KILYVEDEKYMARAIAQVLKKNNYSVDVCYDGESGLDMALTDLYDIIILDILLPQKDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + V+ +T + + L KPF +L+ + L K
Sbjct: 62 VLRELRRKGRETPVILLTAKGDLEDKVEGLDSGADDYLPKPFQAEELLARLRALGRRK 119
>gi|257871361|ref|ZP_05651014.1| transcriptional regulator [Enterococcus gallinarum EG2]
gi|257805525|gb|EEV34347.1| transcriptional regulator [Enterococcus gallinarum EG2]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+A+DD ++ L L GYE V +G A K+R P LL+ DI+MPEMDG+
Sbjct: 2 KILVADDDKEIVELLSIYLHNEGYEAVKAYDGKEALTKIRTTPDIELLILDIMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ +T ++KPF+ +++ V LL
Sbjct: 62 QVVKELRKE-SQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|146280681|ref|YP_001170834.1| osmolarity response regulator [Pseudomonas stutzeri A1501]
gi|145568886|gb|ABP77992.1| two-component response regulator OmpR [Pseudomonas stutzeri A1501]
gi|327478949|gb|AEA82259.1| osmolarity response regulator [Pseudomonas stutzeri DSM 4166]
Length = 244
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +RR L + L + GY V + N + E F L++ D++MP DG+
Sbjct: 11 EKILIVDDDARLRRLLERFLDEQGYRVRTVENTEQMDRLLSRELFQLVVLDLMMPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + + ++ +T A L+KPF+ R+L+ + +L +
Sbjct: 71 SACRRLREANNQIPIIMLTAKGDEASRIQGLEQGADDYLAKPFNPRELLARIRAVLRRQ 129
>gi|15672984|ref|NP_267158.1| two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|12723949|gb|AAK05100.1|AE006334_6 two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|326406546|gb|ADZ63617.1| two-component system regulator [Lactococcus lactis subsp. lactis
CV56]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
M+ +L+ ED+ + ++ K L Y+V + +G SA + ++L D ++P+
Sbjct: 1 MSYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+DG+ + RR ++ PD ++F+T + ++KPF + +L+ +
Sbjct: 61 LDGLTVLRRMKKIQPDTPIIFLTACDYIGDKVAGLDAGADDYITKPFEIEELLARLR 117
>gi|329956436|ref|ZP_08297033.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328524333|gb|EGF51403.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1334
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++++R L + K Y V +G ++K +E ++L+DI+MP+M GIE
Sbjct: 1085 KILIVEDNEELRGLLARLFSKI-YTVYEAQDGEEGFEKTKEVQPDIVLSDIMMPKMSGIE 1143
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ + V+ +T A ++KPF+++ L N L+ +
Sbjct: 1144 MCRKIKSNFETSHIPVILLTAQTAEEYTMQGLKMGADDYVTKPFNVKHLFMRCNNLVNSR 1203
>gi|317968088|ref|ZP_07969478.1| two-component system response regulator [Synechococcus sp. CB0205]
Length = 256
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDGDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLVLLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + V+ +T + L+KPF L +L+ + LL
Sbjct: 61 GLTLCQRLRRDERTSRIPVLMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|300727906|ref|ZP_07061284.1| DNA-binding response regulator RprY [Prevotella bryantii B14]
gi|299774748|gb|EFI71362.1| DNA-binding response regulator RprY [Prevotella bryantii B14]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KILL EDD+++ L + L GY C +G Y + + F + + D++MP+ DG
Sbjct: 4 NLKILLCEDDENLGMLLREYLQAKGYAATLCPDGEIGYKEFMKSKFDICVLDVMMPKKDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 64 FTLAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|291619550|ref|YP_003522292.1| BaeR [Pantoea ananatis LMG 20103]
gi|291154580|gb|ADD79164.1| BaeR [Pantoea ananatis LMG 20103]
Length = 233
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ EDD D L L + GY+V+ +NG + + V L+L D+++P M+G
Sbjct: 6 TKRVLIIEDDADAASVLEAYLKRDGYDVMVASNGMTGLEHVGRWQPDLILLDVMLPVMNG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D V+ +T + + KP+H ++V V +L
Sbjct: 66 TEVLAAIRRSG-DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 123
>gi|260463925|ref|ZP_05812121.1| response regulator receiver modulated diguanylate cyclase
[Mesorhizobium opportunistum WSM2075]
gi|259030300|gb|EEW31580.1| response regulator receiver modulated diguanylate cyclase
[Mesorhizobium opportunistum WSM2075]
Length = 457
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D R L L +EV++ NG A + ++L D++MP+MD
Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ IT V+ L+KP + L+ V L+
Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120
Query: 119 TIKN 122
+K+
Sbjct: 121 RLKS 124
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ++ + K L ++ ++ + + + E P+ ++ + D +
Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVTSDPHAGFFQAAETPYECVMISTAFADFDPLR 215
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + LD + ++ + L +P ++L + + K
Sbjct: 216 LCSQLRSLDRTRFVPIILLADEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRRK 275
>gi|189466428|ref|ZP_03015213.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
17393]
gi|189434692|gb|EDV03677.1| hypothetical protein BACINT_02803 [Bacteroides intestinalis DSM
17393]
Length = 1396
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ EDD+++R ++ + LG Y C NG A + L+++D++MPEMDG+
Sbjct: 1135 RHVLVVEDDEEIRHYICRELGNDFYMTECC-NGKEALASILYHTPDLIISDVMMPEMDGL 1193
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + L ++ +T + N + L KPF + L V ++
Sbjct: 1194 TLCRKIRQNVNINYLPIILLTARTSEEDNLEGLDTGADAYLMKPFSIELLRKTVLNIIRR 1253
Query: 121 K 121
+
Sbjct: 1254 R 1254
>gi|161621454|ref|NP_102571.2| response regulator PleD [Mesorhizobium loti MAFF303099]
Length = 457
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D R L L +EV++ NG A + ++L D++MP+MD
Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ IT V+ L+KP + L+ V L+
Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120
Query: 119 TIKN 122
+K+
Sbjct: 121 RLKS 124
Score = 51.3 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 39/120 (32%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ++ + K L ++ + + + + E + ++ + D +
Sbjct: 157 KVLLIDERKSSVERIQKMLRDR-ADLDVIGDPHAGFFQAAETSYECVMISTAFADFDPLR 215
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + LD + ++ + L +P ++L + + K
Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRRK 275
>gi|189423131|ref|YP_001950308.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
gi|189419390|gb|ACD93788.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++ L + L G+ V S + G ++ + ++L++ D+++P ++
Sbjct: 1 MENRILVIDDDRELCGLLEEYLVAEGFAVESVHTGPQGAEQGSQGNYALIVLDVMLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ RR + V+ +T L KPF+ R+LV + +
Sbjct: 61 GFDVLRRIRGE-SSVPVVMLTARGEEVDRIVGLEMGADDYLPKPFNPRELVARIRAIQRR 119
Query: 121 KN 122
++
Sbjct: 120 QS 121
>gi|115525386|ref|YP_782297.1| response regulator PleD [Rhodopseudomonas palustris BisA53]
gi|115519333|gb|ABJ07317.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris BisA53]
Length = 457
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ ++GA A + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANAKLLEARLSAEYFDVLTASSGAQALEICARSECDIILLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRRLKANPKTHFIPVVMVTALDSPADRVRGLEAGADDFLTKPVADVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 74.8 bits (184), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D + + L + V + A A + + LL+ + + + DG+
Sbjct: 157 RILLVDDRPSSFERMAQVLSSE-HTVDVEPDPAEALFHAADGDYDLLIVSLGLEDFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E L ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHLPILAI-ADADNNTRLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|319783842|ref|YP_004143318.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169730|gb|ADV13268.1| diguanylate cyclase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 457
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D R L L +EV++ NG A + ++L D++MP+MD
Sbjct: 1 MTARILVVDDIPANVRLLEVRLLAEYFEVLTATNGPDAIETCENGKVDVVLLDVMMPDMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ IT V+ L+KP + L+ V L+
Sbjct: 61 GFEVCRRLKSDPATSHIPVVMITALDQVSDRVRGLEAGADDFLTKPVNDLQLMTRVKSLV 120
Query: 119 TIKN 122
+K+
Sbjct: 121 RLKS 124
Score = 52.1 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/120 (11%), Positives = 40/120 (33%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ++ + K L ++ ++ + + + E + ++ + D +
Sbjct: 157 KVLLIDERKTSVERIQKMLRDR-ADLDVTHDPHAGFFQAAETSYECVMISTAFADFDPLR 215
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + LD + ++ + L +P ++L + + K
Sbjct: 216 LCSQLRSLDRTRFVPIILLAEEGEEERIIRGLELGINDYLMRPIDQQELTARLRTQVRRK 275
>gi|315919226|ref|ZP_07915466.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693101|gb|EFS29936.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1381
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL ED++++R ++ L + Y V+ +NG+ A++ V +E L++TDI+MP +DG+
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T V + + KPF++ L+ + LL
Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238
Query: 121 K 121
+
Sbjct: 1239 R 1239
>gi|283835062|ref|ZP_06354803.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
29220]
gi|291069354|gb|EFE07463.1| DNA-binding response regulator CreB [Citrobacter youngae ATCC
29220]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L ED+ + L+ L + G+ V + G +K R+ ++ D+ +P++ G EL
Sbjct: 6 IWLVEDEQGIADTLVYMLQQEGFSVEAFERGLPVLEKARQRCPDAIILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|281424414|ref|ZP_06255327.1| DNA-binding response regulator RprY [Prevotella oris F0302]
gi|281401683|gb|EFB32514.1| DNA-binding response regulator RprY [Prevotella oris F0302]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G+ C +G Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFAATLCPDGEVGYREFLKNKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|260170896|ref|ZP_05757308.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
Length = 1381
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL ED++++R ++ L + Y V+ +NG+ A++ V +E L++TDI+MP +DG+
Sbjct: 1120 KTVLLVEDNEEIRSYVKGHLEQY-YNVLEADNGSDAFEIVLKEFPDLVVTDIMMPGIDGL 1178
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T V + + KPF++ L+ + LL
Sbjct: 1179 ELCSLIKNNLQTGHIPVILLTARTMVMHVKEGFLSGADDYVVKPFNIDVLLVRIYNLLAQ 1238
Query: 121 K 121
+
Sbjct: 1239 R 1239
>gi|251778066|ref|ZP_04820986.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082381|gb|EES48271.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + L GY V +NG D + E L + DI+MP+MDGI++
Sbjct: 6 VLIVEDEKEICDGIAIYLNNQGYNVFKAHNGIEGLDIINNETIHLAIVDIMMPKMDGIQM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ ++ + ++KPF+ +L+ VN L
Sbjct: 66 TMKLRSKF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRR 120
>gi|239832403|ref|ZP_04680732.1| Protein petR [Ochrobactrum intermedium LMG 3301]
gi|239824670|gb|EEQ96238.1| Protein petR [Ochrobactrum intermedium LMG 3301]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 15 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 75 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 130
>gi|237715465|ref|ZP_04545946.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229444174|gb|EEO49965.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1329
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ + L Y V+ NG A D + ++ L+++DI+MP MDG+EL
Sbjct: 1084 ILVVEDNKDMLAFVFRQLSSL-YHVLIAENGVEALDVLEQKSVDLIISDIMMPLMDGVEL 1142
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + + KPF + L V LL+ +
Sbjct: 1143 CKHLKQNLDYSHIPVILLTAKTNLESRIEGLEEGADAYIEKPFSMEYLRANVANLLSNR 1201
>gi|237734182|ref|ZP_04564663.1| two-component system transcriptional regulator [Mollicutes
bacterium D7]
gi|229382742|gb|EEO32833.1| two-component system transcriptional regulator [Coprobacillus sp.
D7]
Length = 218
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+ + R + L AGY +G A + + F L+L DI++PE++
Sbjct: 1 MN-KILIVEDEQAICRLIKINLSDAGYSCKCAYDGKGAIELIEYNQFDLILLDIMLPEIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL L ++ V+F+T V + KPF + +LV V +L
Sbjct: 60 GYELMEYIRPL--EIPVIFLTAKGDVKDRVKGLKLGAEDYIVKPFEIIELVARVETVLRR 117
Query: 121 KN 122
+
Sbjct: 118 YH 119
>gi|188996301|ref|YP_001930552.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931368|gb|ACD65998.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 220
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + R + K L + G+ V +NGA+A + + E + +++ D+++PE DG+
Sbjct: 2 RLLLVEDDKTLGRLIKKGLEEEGFLVDLVSNGATAEEYLNTENYEVIVLDLMLPEKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ +T +V L+KPF ++LV + L+ +
Sbjct: 62 ILESLRNRGICTPVLILTAKGSVEDKIKGLNAGADDYLAKPFDFQELVARIKALIRRYH 120
>gi|169343719|ref|ZP_02864718.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
gi|169298279|gb|EDS80369.1| DNA-binding response regulator [Clostridium perfringens C str.
JGS1495]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G + +E +L++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIEIFKEFNPTLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|219847767|ref|YP_002462200.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
gi|219542026|gb|ACL23764.1| response regulator receiver protein [Chloroflexus aggregans DSM
9485]
Length = 390
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DDD + + L AGYEV +G A ++ + P L+ D+++P +DG
Sbjct: 5 TLLIVDDDDAVAEMIELMLRNAGYEVRRAASGEEALQQIFKSPPDALICDVLLPGIDGYT 64
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + L L ++ +T ++ L+KPF +LV V LLT
Sbjct: 65 LCKRVRQHPLTRMLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPPELVYRVKNLLTR 123
>gi|319902304|ref|YP_004162032.1| two component transcriptional regulator, winged helix family
[Bacteroides helcogenes P 36-108]
gi|319417335|gb|ADV44446.1| two component transcriptional regulator, winged helix family
[Bacteroides helcogenes P 36-108]
Length = 241
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 54/113 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED++ + + L G+ + +G + + +L+ D++MP MDG E+
Sbjct: 6 ILLVEDEETLAMIIKDTLNSQGFAIHIAGDGEEGLRRFFDLRPDVLVADVMMPRMDGFEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 66 VRRIRQTDKHTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|322419045|ref|YP_004198268.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320125432|gb|ADW12992.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L + GY+ V ++GA + L+L D+++P M G ++
Sbjct: 4 ILIIEDEKDLAELISFNLQQEGYKTVISHDGAEGLEAANRLQPDLILLDLMLPGMLGTDV 63
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + VM +T + KPF R+L+ + +L
Sbjct: 64 CKSIRKSEKTSHIPVMMLTARGEEIDKVVGFEVGADDYVVKPFSTRELMLRIKAILRR 121
>gi|254719556|ref|ZP_05181367.1| Protein petR [Brucella sp. 83/13]
gi|265984563|ref|ZP_06097298.1| two component transcriptional regulator [Brucella sp. 83/13]
gi|264663155|gb|EEZ33416.1| two component transcriptional regulator [Brucella sp. 83/13]
Length = 241
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 21 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 81 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 136
>gi|254562811|ref|YP_003069906.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Methylobacterium extorquens DM4]
gi|254270089|emb|CAX26076.1| DNA-binding response regulator in two-component regulatory system
with EnvZ [Methylobacterium extorquens DM4]
Length = 270
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD ++R L L K G V +G + + L++ D++MP DG+
Sbjct: 29 HVLIVDDDREIRDLLSNYLRKNGLRVTLAADGRQMRAFLDADRVDLVVLDVMMPGDDGLV 88
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + L KPF R+L+ + +L
Sbjct: 89 LCRELRSGRHKATPVLMLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 146
>gi|237755616|ref|ZP_04584230.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Sulfurihydrogenibium yellowstonense SS-5]
gi|237692211|gb|EEP61205.1| alkaline phosphatase synthesis transcriptional regulatory protein
[Sulfurihydrogenibium yellowstonense SS-5]
Length = 219
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ D+ + + L GY V S +G A + + +++ D+++P++DG+E
Sbjct: 2 KILLVEDNLDLNNTIREVLELNGYIVDSAFDGKEALNFAENSSYDVIILDLMLPDIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ + V+ +T ++KPF + +L+ + +
Sbjct: 62 VLKTIRSKGIYTPVIILTAKNQTKDKITGLDLGADDYVTKPFDVDELLARIRAI 115
>gi|240145086|ref|ZP_04743687.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|257202757|gb|EEV01042.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|291537822|emb|CBL10933.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ L L GY+V NG A + ++E+ L+L DI+MPEMDGI
Sbjct: 4 ILVCDDEKDIVSALKIYLMADGYQVFEAYNGKEALEVLKEQDIHLVLMDIMMPEMDGIAA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ V+ +T + ++KPF+ ++ V L
Sbjct: 64 MVKIRE-TSNVPVILLTAKSEDTDKVLGLTVGADDYITKPFNPIEVQARVKSQLRR 118
>gi|225175429|ref|ZP_03729424.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225169181|gb|EEG77980.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D++ +RR L + L G+ V+ NG+ A + L++ D++MPEMD
Sbjct: 1 MTEKILVVDDEEKIRRILRQVLENEGFTVLEAENGSEALSVFLNKNPVLVILDVMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE ++ D V+ ++ A+ +SKPF ++ V +L
Sbjct: 61 GIEFLKKIRPQF-DTPVIILSAKDALVDKAVGFTLDIDDYVSKPFSALEMAMRVKAVLKR 119
>gi|218438405|ref|YP_002376734.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
gi|218171133|gb|ACK69866.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7424]
Length = 361
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ D + AL + GY V +G +A +++ P L+L D++MP ++G E+
Sbjct: 12 ILAVDDNPDNLFLIKLALEQEGYRVHLVEDGLTALAQIQYAPPDLILLDVMMPGINGYEV 71
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + P + ++ IT + + + KP + +L V LL +K+
Sbjct: 72 TRRIRQNPNIPFIPILLITAY-EEPSLVQGLDVGADEFIRKPVQIDELQARVRSLLRLKH 130
>gi|111025331|ref|YP_707751.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|110824310|gb|ABG99593.1| response regulator, two-component system [Rhodococcus jostii RHA1]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + + L G+ VV+ G + E+ F +++ DI++P M+G E
Sbjct: 2 RVLVVEDEARLASVVRRGLELEGFVVVTAATGEDGLWRATEDTFDVIVLDIMLPGMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ +T D+ L KPF LV + L+
Sbjct: 62 IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRR 118
>gi|78061758|ref|YP_371666.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77969643|gb|ABB11022.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 395
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +D+ ++R L + L G++V + +G ++ EP+ LL+ D++M DG+
Sbjct: 164 RIVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEPEDGLS 223
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR L ++ +T A L+KPF +LV V LL +
Sbjct: 224 VCRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQ 281
>gi|78224573|ref|YP_386320.1| two component transcriptional regulator [Geobacter metallireducens
GS-15]
gi|78195828|gb|ABB33595.1| two component transcriptional regulator, winged helix family
[Geobacter metallireducens GS-15]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + F+ + L + YEV + NG E+ F L++ D+++P+ DG+
Sbjct: 2 KILVVEDEKKVSSFIKRGLEEERYEVEAAFNGEDGLKMALEKGFDLIILDVMLPKKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E V+ +T +V + L+KPF +L+ V L+
Sbjct: 62 VVRELRERKNATPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
>gi|15894117|ref|NP_347466.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15023722|gb|AAK78806.1|AE007599_2 Response regulator [Clostridium acetobutylicum ATCC 824]
gi|325508244|gb|ADZ19880.1| Response regulator [Clostridium acetobutylicum EA 2018]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L GYE++ NG A K+ E L++ D+++P++DGIE
Sbjct: 3 KILVVDDDIEILNLVSIYLSNEGYEIIKATNGCEAISKINNEKPKLVILDVMLPDIDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ ++ ++ + ++KPF+ + + V LL
Sbjct: 63 VCRKIREKL-NVPIIILSAKVQNSDKIKGLLTGADDYITKPFNQLEFIVRVKTLLRR 118
>gi|329946281|ref|ZP_08293875.1| putative response regulator MprA [Actinomyces sp. oral taxon 170
str. F0386]
gi|328527573|gb|EGF54568.1| putative response regulator MprA [Actinomyces sp. oral taxon 170
str. F0386]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +LL +D+ +RR L L ++GY V+ ++GA A D + ++++D++MP MDG
Sbjct: 10 SATVLLVDDEAPIRRSLGPYLERSGYRVLLASDGAEALDLLASYQVDIIVSDVLMPRMDG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR ++ +T A + LSKPF +L + + +L
Sbjct: 70 RELVRRVRAGGAWTPIILLTQVDASYERISALDDGADDYLSKPFDPAELASRICAVLRR 128
>gi|260592155|ref|ZP_05857613.1| DNA-binding response regulator RprY [Prevotella veroralis F0319]
gi|260535789|gb|EEX18406.1| DNA-binding response regulator RprY [Prevotella veroralis F0319]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYKAFLKNKYDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEIPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|260437804|ref|ZP_05791620.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
gi|292809828|gb|EFF69033.1| DNA-binding response regulator ResD [Butyrivibrio crossotus DSM
2876]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + L + YEV ++G + + + L + D+++P D
Sbjct: 1 MS-RILIVEDEISIAELEKDYLELSDYEVDIASDGETGESMALKGDYVLCILDVMLPGKD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + ++ ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKAIRKE-KNIPIIMVSAKRDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118
>gi|259415942|ref|ZP_05739862.1| phosphate regulon transcriptional regulatory protein PhoB
[Silicibacter sp. TrichCH4B]
gi|259347381|gb|EEW59158.1| phosphate regulon transcriptional regulatory protein PhoB
[Silicibacter sp. TrichCH4B]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ R L L G+ V+ NG A V E+ +++ D +MP + GIE
Sbjct: 7 TVLVVEDELAQREVLAYNLEADGFRVIKAENGEEALLLVEEDMPDIIVLDWMMPNLTGIE 66
Query: 64 LARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 67 ICRRLKTRTDTRGIPIIMLSARSEEVDKVRGLETGADDYVVKPYSVIELMARVRTQLRR 125
>gi|145636091|ref|ZP_01791761.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittHH]
gi|145270613|gb|EDK10546.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae PittHH]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ +R + L + Y+V+ ++ +A +K++E L+L D ++P
Sbjct: 1 MTRKILIVEDECAIREMITLFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + + ++ +T + ++KPF + L+ + +
Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|298244853|ref|ZP_06968659.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Ktedonobacter racemifer DSM 44963]
gi|297552334|gb|EFH86199.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Ktedonobacter racemifer DSM 44963]
Length = 465
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 64/118 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ + L + L K GY+V + ++G + ++++ L+L D+ +P++
Sbjct: 1 MSLGILIVDDEPHLPHQLARYLRKRGYDVYTASDGEAGLRELQKNTIDLVLLDLRLPKLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR E + +L V+ +T + V ++ + + K F L +L+ V R L
Sbjct: 61 GLEVLRRIREHEAELPVVILTAYGDVQTAVEAMKLGASDYILKGFDLEELLLVVKRAL 118
>gi|304316235|ref|YP_003851380.1| Fis family transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777737|gb|ADL68296.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thermoanaerobacterium thermosaccharolyticum DSM
571]
Length = 453
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+A+D+ +MR L KAL GY + NGA A +K + L++ DI MPE++GI
Sbjct: 2 RHILVADDEKNMRWALKKALFNDGYVIDEAENGAVALNKFESSIYDLIILDIKMPEVNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + E D D+ V+ IT + + + + KPF + +L + + L I N
Sbjct: 62 DVLKTIREKDKDIPVIVITAYGEIDTAIQAIKLGAVDYIQKPFDINELKLTIGKALEITN 121
>gi|225386432|ref|ZP_03756196.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
DSM 15981]
gi|225047463|gb|EEG57709.1| hypothetical protein CLOSTASPAR_00179 [Clostridium asparagiforme
DSM 15981]
Length = 121
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+IL+ +DD ++ + L K YE + +G A + +L+L D+++P MDG
Sbjct: 4 KQRILIVDDDANIAELISLYLMKECYETMIVGDGEEALRVFPDFKPNLVLLDLMLPGMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ ++ + + KPF ++LV V +L
Sbjct: 64 YQVCRELR-TSSQVPIIMLSAKGEIFDKVLGLELGADDYMIKPFDSKELVARVKAVLRR 121
>gi|212692193|ref|ZP_03300321.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
gi|212665314|gb|EEB25886.1| hypothetical protein BACDOR_01688 [Bacteroides dorei DSM 17855]
Length = 1373
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1111 KYKLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNG 1169
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1170 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1229
Query: 120 IK 121
+
Sbjct: 1230 SR 1231
>gi|166032523|ref|ZP_02235352.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
27755]
gi|166026880|gb|EDR45637.1| hypothetical protein DORFOR_02238 [Dorea formicigenerans ATCC
27755]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GY V +G + + +E L + D++MP MD
Sbjct: 3 MN-HVLIVEDDKEIREGVEIYLKSQGYVVFQAADGVEGLEVIEKEEIHLAIVDVMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + E D V+F++ + ++KPF +L+ VN L
Sbjct: 62 GIQMTVKLREKY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPLELLARVNSQLRR 120
>gi|88602714|ref|YP_502892.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
gi|88188176|gb|ABD41173.1| putative PAS/PAC sensor protein [Methanospirillum hungatei JF-1]
Length = 393
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60
+ ++L+ +DD +R FL L GYEV + A +++ E P L+L D++MP
Sbjct: 5 DARLLIVDDDPAIREFLKNRLMMEGYEVSEAEDAEKALERLEEHPDTDLILLDVIMPGAS 64
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +L R E + V+ +T V + L+KPF R+++ + +
Sbjct: 65 GFDLLRTLKEDRRYCQIPVIMVTALGLVQDKELAFRLGAGDYLTKPFDTREMLARIGTHI 124
Query: 119 TIK 121
T+K
Sbjct: 125 TLK 127
>gi|332525011|ref|ZP_08401194.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
gi|332108303|gb|EGJ09527.1| two-component response regulator [Rubrivivax benzoatilyticus JA2]
Length = 243
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 45/118 (38%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + EDD MR L L + G V + + ++ L++ D+++P GI
Sbjct: 6 HHLFVVEDDPAMRDMLSAYLERQGLSVTAMASAEEMMRRIHRRRPDLIVLDVMLPGESGI 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T L KPF R+L+ + +L
Sbjct: 66 DACRRLRAEGDRVPIILLTARTEEVDRVLGLEMGADDYLGKPFSARELLARIRAVLRR 123
>gi|312865265|ref|ZP_07725493.1| putative response regulator MprA [Streptococcus downei F0415]
gi|311099376|gb|EFQ57592.1| putative response regulator MprA [Streptococcus downei F0415]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILLAED++ + R AL GY+V NG A D RE + L++ DI+MP
Sbjct: 1 MTMKILLAEDEEQLGRVYRAALEHQGYQVDQAVNGQEAVDLARENAYDLMILDIMMPVKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E + V+ +T + + + L+KP L++L+ + +
Sbjct: 61 GLEALSEIRDSGDRTHVIMLTAMSEINDRVTGLDAGADEYLTKPISLKELLARLRS-MER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|189467435|ref|ZP_03016220.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
17393]
gi|189435699|gb|EDV04684.1| hypothetical protein BACINT_03824 [Bacteroides intestinalis DSM
17393]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R + +L K + V + + SA DKV + + +L DI++P G++
Sbjct: 2 KILIVEDEPDLRETIRISLLKEHFVVETAADYFSALDKVNDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ + L+KPFHL +L V ++ +
Sbjct: 62 LLRELKRLHRSDSVLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVKSVIRRR 119
>gi|126659007|ref|ZP_01730148.1| NarL subfamily protein [Cyanothece sp. CCY0110]
gi|126619664|gb|EAZ90392.1| NarL subfamily protein [Cyanothece sp. CCY0110]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ ILL +D+ +R + L +G V +N A+ + + ++++DI+MPE+D
Sbjct: 4 SATILLVDDEPSIRESVQAYLEYSGDLTVKVASNATDAWQVLEKTIPDVIISDIMMPEVD 63
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E + + V+F+T + L KPF +L V LL
Sbjct: 64 GYEFLEKLRNDSRFEGIPVIFLTARGMTSDRIKGYHSGCDAYLPKPFDPEELEAIVKNLL 123
Query: 119 TIK 121
+
Sbjct: 124 ERR 126
>gi|332980720|ref|YP_004462161.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332698398|gb|AEE95339.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R + K G+E+V NG A + R F +++ D++MPE+DG
Sbjct: 4 ILVVDDEPKIRELIRKYAIFEGHEIVEAENGMQAIELCRRHNFDIIILDVMMPELDGFST 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ D V+ ++ + KPF ++L+ V+ ++
Sbjct: 64 CHEIRKIC-DTPVLMLSARGEEYDRIHGFELGVDDYVVKPFSPKELMLRVDAIMKR 118
>gi|318058490|ref|ZP_07977213.1| putative two-component system response regulator [Streptomyces sp.
SA3_actG]
gi|318075596|ref|ZP_07982928.1| putative two-component system response regulator [Streptomyces sp.
SA3_actF]
gi|333026125|ref|ZP_08454189.1| putative response regulator [Streptomyces sp. Tu6071]
gi|332745977|gb|EGJ76418.1| putative response regulator [Streptomyces sp. Tu6071]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|300866841|ref|ZP_07111518.1| putative Response regulator receiver modulated diguanylate cyclase
[Oscillatoria sp. PCC 6506]
gi|300335151|emb|CBN56678.1| putative Response regulator receiver modulated diguanylate cyclase
[Oscillatoria sp. PCC 6506]
Length = 320
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D R L K L GY V NG A +P L++ DI MP+M+G E+
Sbjct: 13 ILIVDDNPDNLRLLSKILESQGYIVRKSLNGKMALQAAYRDPPDLIILDINMPDMNGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ E DL ++FI+ V + ++KPF ++++ V L
Sbjct: 73 CQQLKESEATQDLPIIFISALDRVNDKVRAFEMGAVDYITKPFQEQEVLMRVRNQL 128
>gi|299140847|ref|ZP_07033985.1| DNA-binding response regulator RprY [Prevotella oris C735]
gi|298577813|gb|EFI49681.1| DNA-binding response regulator RprY [Prevotella oris C735]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G+ C +G Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGFAATLCPDGEVGYREFLKNKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|296134173|ref|YP_003641420.1| two component transcriptional regulator, winged helix family
[Thermincola sp. JR]
gi|296032751|gb|ADG83519.1| two component transcriptional regulator, winged helix family
[Thermincola potens JR]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + RFL L GY V N+G S ++ F L++ D+++P ++G+
Sbjct: 4 EKILIIEDEVKIARFLELELKYEGYMVEQENDGRSGLERATGGKFDLIILDVMLPSLNGM 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR ++ + V+ +T V ++KPF + +L+ + +L +
Sbjct: 64 EVLRRLRQV-SETPVIMLTAKDEVTDKVMGLDIGADDYMTKPFAIEELLARIRAVLKRR 121
>gi|288905481|ref|YP_003430703.1| two-component response regulator [Streptococcus gallolyticus UCN34]
gi|306831564|ref|ZP_07464722.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|288732207|emb|CBI13772.1| putative two-component response regulator [Streptococcus
gallolyticus UCN34]
gi|304426349|gb|EFM29463.1| DNA-binding response regulator [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ M R L AL GY+V S +G +A D E + +++ DI+MP GIE
Sbjct: 2 KILVAEDEIQMNRVLTTALTHEGYDVDSVYDGQAAIDMANENAYDVMVMDIMMPVKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T A V L+KPF L++L+ + ++ +
Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEVDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|262403061|ref|ZP_06079621.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
gi|262350560|gb|EEY99693.1| pole remodelling regulatory diguanylate cyclase [Vibrio sp. RC586]
Length = 368
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ + R L L Y ++ +GA A ++ L+L DI+MPE
Sbjct: 1 MSELETILIVDDNPENRALLAGLLKPH-YRLLVAVSGAQALAICHKQKPDLVLLDIMMPE 59
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ +R D+ V+F+T + + + KP L+
Sbjct: 60 MDGYEVCQRMRADPELQDIPVIFLTAKSQIEDEQHGFDVGAVDYILKPISPPILLARTRT 119
Query: 117 LLTIKN 122
L +++
Sbjct: 120 HLRLQH 125
>gi|253996694|ref|YP_003048758.1| winged helix family two component transcriptional regulator
[Methylotenera mobilis JLW8]
gi|253983373|gb|ACT48231.1| two component transcriptional regulator, winged helix family
[Methylotenera mobilis JLW8]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G++V + ++G S F L + D++MP+M+GI
Sbjct: 2 HKILLIDDDIELTAMLKEFLCTEGFDVTTASDGVSGAQLALSNQFDLAVLDVMMPKMNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + + V+ +T + + KP R+L + +L
Sbjct: 62 ETLGLIRK-SSQIPVIMLTARGDESDRFFGLELGADDYVPKPCTPRELTARIRAILRR 118
>gi|256390005|ref|YP_003111569.1| two component transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256356231|gb|ACU69728.1| two component transcriptional regulator, winged helix family
[Catenulispora acidiphila DSM 44928]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD +R L AL + G++V +G A + L++ D+++P +DG E+
Sbjct: 5 LLVEDDAAIRTALQLALTRQGHQVAVAASGEEALATYKTVRPDLIVLDVMLPGVDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + L ++ +T + + KP R L + +L
Sbjct: 65 RQIRRTE-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQPRVLDARIRAVLRR 118
>gi|228934444|ref|ZP_04097279.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228825081|gb|EEM70878.1| hypothetical protein bthur0009_29000 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 245
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+
Sbjct: 26 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDSTYQLVILDILLPGMN 85
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + + + ++KPF ++ L+ V LL
Sbjct: 86 GHELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRR 144
>gi|228971393|ref|ZP_04132019.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978006|ref|ZP_04138385.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228781667|gb|EEM29866.1| Two-component response regulator [Bacillus thuringiensis Bt407]
gi|228788260|gb|EEM36213.1| Two-component response regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
Length = 209
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
MR+ + L GYE NG A K+ + + ++ DI+MPEMDG+ + + +
Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETDHYDFVVLDIMMPEMDGLSVCKEIRK-TS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++F+T + + KPF +LV + +L
Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELVARMEAVLRR 106
>gi|225571197|ref|ZP_03780195.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
15053]
gi|225160028|gb|EEG72647.1| hypothetical protein CLOHYLEM_07285 [Clostridium hylemonae DSM
15053]
Length = 233
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + L + GYEV+ +G A ++ E LL+ D++MP +D
Sbjct: 3 MS-KILVCDDDREIVEAIDIYLTQEGYEVLKAYDGEEALKVLQSEKVDLLIIDVMMPRLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E + ++ ++ ++ + A ++KPF+ +LV V L
Sbjct: 62 GIRATLKIREQN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120
>gi|297585393|ref|YP_003701173.1| winged helix family two component transcriptional regulator
[Bacillus selenitireducens MLS10]
gi|297143850|gb|ADI00608.1| two component transcriptional regulator, winged helix family
[Bacillus selenitireducens MLS10]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I++ +D+ +R L GY + +G A +++ L+L DI MP MDG+
Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + V+F++ + ++KPF +L + + +
Sbjct: 62 EVCREIRSQLS-IPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRM 118
>gi|108761106|ref|YP_632371.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
gi|108464986|gb|ABF90171.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
Length = 450
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D++ +R FL +AL G+ V + +G A + + LLLTD+ MP MDG+
Sbjct: 3 RILVADDEEGVRSFLAEALEYEGHSVTTAADGEEAARLMARQGVDLLLTDLRMPGMDGLT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLTIK 121
L R+ E PD++V+ +T V + L KP +L V R L +
Sbjct: 63 LLRKVREEQPDVEVVVLTAVGTVESAVAAMKAGAFDFLLKPVGSPAELRLTVARALERR 121
>gi|23010703|ref|ZP_00051302.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 240
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ + + L V +G + + L++ D+++P DG+
Sbjct: 9 HILVVEDDREISALVARYLRANDCRVSLAGDGREMDRVLADARVDLIVLDLMLPGEDGLS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + L KPF+ R+L+ + +L K
Sbjct: 69 LCRRLRA-GSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125
>gi|28199836|ref|NP_780150.1| two-component system, regulatory protein [Xylella fastidiosa
Temecula1]
gi|71275218|ref|ZP_00651505.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Dixon]
gi|71899561|ref|ZP_00681717.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|170731213|ref|YP_001776646.1| response regulator receiver protein [Xylella fastidiosa M12]
gi|182682586|ref|YP_001830746.1| two component transcriptional regulator [Xylella fastidiosa M23]
gi|28057957|gb|AAO29799.1| two-component system, regulatory protein [Xylella fastidiosa
Temecula1]
gi|71164027|gb|EAO13742.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Dixon]
gi|71730690|gb|EAO32765.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Xylella fastidiosa Ann-1]
gi|167966006|gb|ACA13016.1| response regulator receiver protein [Xylella fastidiosa M12]
gi|182632696|gb|ACB93472.1| two component transcriptional regulator, winged helix family
[Xylella fastidiosa M23]
gi|307578868|gb|ADN62837.1| two component transcriptional regulator [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ +R + AL K +E + ++ A + + L+L D ++P
Sbjct: 1 MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL RR + L ++ ++ +T + + KPF R+L+ + ++
Sbjct: 61 GLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVM 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|308068960|ref|YP_003870565.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305858239|gb|ADM70027.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 237
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 55/121 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +D+ + R L L GY V G +K + +++ D+++PE++
Sbjct: 1 MEKSVLVIDDEKKISRLLQLELSHEGYAVEIAQTGREGLEKALAGTWDIIILDVMLPEIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ ++D V+ +T ++KPF + +L+ + +
Sbjct: 61 GVEVLKQIRKVDNHTPVIMVTARNTTPDKVSGLDEGANDYITKPFEIEELLARMRASMRH 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|297624706|ref|YP_003706140.1| winged helix family two component transcriptional regulator
[Truepera radiovictrix DSM 17093]
gi|297165886|gb|ADI15597.1| two component transcriptional regulator, winged helix family
[Truepera radiovictrix DSM 17093]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ IL+ EDD D+ R L L +AG+ V +C G VRE L++ D+ +P++ G
Sbjct: 4 SKHILIVEDDLDISRLLTLELEEAGFRVTACETGMRGLAAVRELNPDLIVLDLGLPDLSG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ARR + ++ +T VA + L+KPFH +L+ + L +
Sbjct: 64 AEIARRVRK-TSSTPIIILTAADDVATKVEMLNAGADDYLAKPFHTEELLARIRVQLRHQ 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|189424064|ref|YP_001951241.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
gi|189420323|gb|ACD94721.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + F+ + L + GY+V + ++G + +E+P+ LL+ D+++P DG+
Sbjct: 2 RILVVEDEKKVAAFIKRGLEEEGYQVDAVHDGEEGVRQAQEQPYDLLILDVMLPSKDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + V+ +T + L+KPF +L V L
Sbjct: 62 VVRELRQAGTVMPVLMLTARDTTDDIVAGLDAGSDDYLTKPFAFAELSARVRALARR 118
>gi|186475955|ref|YP_001857425.1| two component transcriptional regulator [Burkholderia phymatum
STM815]
gi|184192414|gb|ACC70379.1| two component transcriptional regulator, winged helix family
[Burkholderia phymatum STM815]
Length = 248
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +L+ +DD D+R + L + G + G + E L++ D+++P
Sbjct: 1 MDKTDHVLIVDDDRDIRELVGTYLTRNGVRATLASGGRQMRAALAAERPDLIVLDLMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G++L R + ++ +T + L+KPF +R+L+ + +
Sbjct: 61 ESGLDLCRELRAGEFQTVPILMLTALSEETDRVVGLEMGADDYLAKPFAVRELLARIRAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|152967758|ref|YP_001363542.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
gi|151362275|gb|ABS05278.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G E C +G A R L+L D+++P D
Sbjct: 1 MRGRVLVVDDDTALAEMLGIVLQGEGLETRFCADGDQAVGAFRATRPDLVLLDLMLPGTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ R+ + ++ +T + + KPF ++LV V L
Sbjct: 61 GMEVCRQIRAE-SGVPIVMLTAKSDTVDVVLGLEAGADDYVVKPFKPKELVARVRARLR 118
>gi|309389650|gb|ADO77530.1| response regulator receiver protein [Halanaerobium praevalens DSM
2228]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 62/120 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ ++R L AL KAGY+V + NG ++EE ++L D+ MP MD
Sbjct: 1 MKNKVLIVDDEKNIRLTLKTALKKAGYQVETAVNGEDGLSILKEEEIPVILLDMKMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + + KV+ ITG+ +V ++ L KPF +++ V +
Sbjct: 61 GIQFLKEIANDNFETKVIMITGYGSVETAVETLKLGAVDYLRKPFKPEEIIGIVEDVFER 120
>gi|283836628|ref|ZP_06356369.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
29220]
gi|291067359|gb|EFE05468.1| transcriptional regulatory protein OmpR [Citrobacter youngae ATCC
29220]
Length = 243
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M IL+ +DD + L L + + V +C++G A V +P +L+L D+++P++
Sbjct: 1 MKPTILVVDDDVAVCTLLQDVLSEHVFAVTACHSGQEALRCVETQPEIALVLLDMMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+ + ++ ++ P L V+ +TG + + + KPF+ R LV V +L
Sbjct: 61 NGLMVLQQVQKMRPGLPVVMLTGLGSESDVVVGLEMGADDYIGKPFNARVLVARVKAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|302536438|ref|ZP_07288780.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302445333|gb|EFL17149.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|229496683|ref|ZP_04390397.1| DNA-binding response regulator RprY [Porphyromonas endodontalis
ATCC 35406]
gi|229316580|gb|EEN82499.1| DNA-binding response regulator RprY [Porphyromonas endodontalis
ATCC 35406]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+K I EDDD++ L + L G+E +G + + L + D++MP
Sbjct: 1 MNEKTKIFFCEDDDNLGLLLKEYLDTKGFETHLFRDGEEGLHNFEKTEYDLCILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LAR ++ + ++F+T ++KPF L +L+ + +L
Sbjct: 61 KDGFTLARDIRAINTMVPIIFLTAKTEKGDVLHGFEVGADDYVTKPFSLDELLARIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|229080381|ref|ZP_04212905.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
gi|228702943|gb|EEL55405.1| hypothetical protein bcere0023_30270 [Bacillus cereus Rock4-2]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + P+ L++ DI++P M+
Sbjct: 11 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNPYQLVILDILLPGMN 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + S + ++KPF ++ L+ V LL
Sbjct: 71 GHELLREFRKLN-NTPVLMMTALSDDENQIRSFDAEADDYVTKPFKIQLLLKRVEALLRR 129
>gi|168216104|ref|ZP_02641729.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
gi|182381612|gb|EDT79091.1| DNA-binding response regulator [Clostridium perfringens NCTC 8239]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E
Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ ++ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIRKV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|222055651|ref|YP_002538013.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
gi|221564940|gb|ACM20912.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. FRC-32]
Length = 452
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 60/118 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD+ +RR L L + GYEV + ++G + L++TD+ M MD
Sbjct: 1 MKGKILVIDDDNSLRRVLEYNLKEEGYEVQAASSGEEGLFLFGQSQPDLVITDMKMSGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + + E P+ V+ IT F V + ++ ++KPF+ +L V + L
Sbjct: 61 GLMVLKSIKERSPETLVIIITAFGTVNIAVEAMKAGAYDYITKPFNRDELKLIVLKAL 118
>gi|27364655|ref|NP_760183.1| Copper-sensing two-component system response regulator CpxR [Vibrio
vulnificus CMCP6]
gi|37681297|ref|NP_935906.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
gi|320155050|ref|YP_004187429.1| copper-sensing two-component system response regulator CpxR [Vibrio
vulnificus MO6-24/O]
gi|27360800|gb|AAO09710.1| Copper-sensing two-component system response regulator CpxR [Vibrio
vulnificus CMCP6]
gi|37200048|dbj|BAC95877.1| transcriptional regulator CpxR [Vibrio vulnificus YJ016]
gi|319930362|gb|ADV85226.1| copper-sensing two-component system response regulator CpxR [Vibrio
vulnificus MO6-24/O]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G+ V N+G + E L+L D++MP+++GI+
Sbjct: 4 ILLIDDDTELTSLLTEVLSYEGFNVTEANDGEQGLQALSAE-IDLILLDVMMPKLNGIDT 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E D V+ +T L KPF R+L+ + +L
Sbjct: 63 LKKLREQW-DTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIKAILRR 117
>gi|297158051|gb|ADI07763.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|239616849|ref|YP_002940171.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
gi|239505680|gb|ACR79167.1| Hpt sensor hybrid histidine kinase [Kosmotoga olearia TBF 19.5.1]
Length = 958
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++IL+ ED+ + + K L K G++V NG A +K++E+ +SL++ D+ MP MDG
Sbjct: 696 SKEILVVEDNKANQVLIKKMLEKVGFKVDVAGNGKEALEKIKEKTYSLIIMDMQMPVMDG 755
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + V+ +T S L KP ++L++ + L I+
Sbjct: 756 YTATRKIREKGLKVPVIALTAHTLRGDEAKSLEAGCDGYLGKPVKQKELIDAIVYFLRIQ 815
>gi|167769573|ref|ZP_02441626.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
17241]
gi|167668541|gb|EDS12671.1| hypothetical protein ANACOL_00907 [Anaerotruncus colihominis DSM
17241]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+ ++ +K L GY V C+NG A + + P+ L + DI+MP DG+
Sbjct: 2 RILVADDERELLDITVKRLKAQGYAVDGCDNGDDAAYYLEQTPYDLAILDIMMPGRDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AV L+KPF +L+ + LL +
Sbjct: 62 ILRGLRAAGRTLPVLLLTALDAVGDRVSGLDAGADDYLTKPFAFDELLARIRVLLRRSS 120
>gi|89902538|ref|YP_525009.1| response regulator receiver domain-containing protein [Rhodoferax
ferrireducens T118]
gi|89347275|gb|ABD71478.1| response regulator receiver domain protein [Rhodoferax
ferrireducens T118]
Length = 124
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+QKIL+A+D+ ++ L L + GY V+ +G A + + E L+L D++MP+
Sbjct: 1 MSQKILVADDEPNIVISLEYLLKREGYTVLIARDGQEALEAIAREKPDLVLLDVMMPKKT 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + D +K++ +T A ++KPF R+LV +V LL
Sbjct: 61 GFEVCQALRASDDLQAIKILMLTAKGRDTDVAKGLALGADAYITKPFSTRELVLKVAELL 120
Query: 119 T 119
Sbjct: 121 R 121
>gi|308272187|emb|CBX28794.1| hypothetical protein N47_L13920 [uncultured Desulfobacterium sp.]
Length = 525
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++++R+ LI+ L K G VV+ +G + ++ E L+L D+ MP ++GIE+
Sbjct: 60 VLVVDDEEEIRKILIQILEKEGLRVVTAEDGQESMQQICLEVPDLILLDVHMPGINGIEV 119
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT----I 120
++ +D DL V+ IT +A + ++ L+KPF ++V VNR L
Sbjct: 120 LKKIKGIDDDLPVVLITAYANIHQAVEAMKGGAYDYLAKPFDNNEVVWIVNRALAEGQLR 179
Query: 121 KN 122
KN
Sbjct: 180 KN 181
>gi|294786787|ref|ZP_06752041.1| DNA-binding response regulator MtrA [Parascardovia denticolens
F0305]
gi|315226412|ref|ZP_07868200.1| DNA-binding response regulator [Parascardovia denticolens DSM
10105]
gi|294485620|gb|EFG33254.1| DNA-binding response regulator MtrA [Parascardovia denticolens
F0305]
gi|315120544|gb|EFT83676.1| DNA-binding response regulator [Parascardovia denticolens DSM
10105]
Length = 239
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + + L G+ +GASA L++ DI++P MDG+E
Sbjct: 14 ILVVEDEPTLATAIGQRLASEGWSTRIAGDGASAVQLAATYRPDLIIMDIMLPVMDGLEA 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + P + ++ +T ++KPF +R+LV LL
Sbjct: 74 TKRIVTMRP-VPILMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128
>gi|281492173|ref|YP_003354153.1| Two-component system regulator [Lactococcus lactis subsp. lactis
KF147]
gi|281375844|gb|ADA65338.1| Two-component system regulator [Lactococcus lactis subsp. lactis
KF147]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG
Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEASSKDYDLILLDLMLPELDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ARR + D ++ +T + ++KPF + +L+ V +
Sbjct: 63 FEVARRLRKE-KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121
>gi|282880326|ref|ZP_06289040.1| response regulator receiver domain protein [Prevotella timonensis
CRIS 5C-B1]
gi|281305828|gb|EFA97874.1| response regulator receiver domain protein [Prevotella timonensis
CRIS 5C-B1]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L GY C +G Y + ++ + + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYIATLCPDGEEGYKEFLKDRYDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEMPIIFLTAKVLKEDILEGFKIGADDYITKPFSMEELVLRIEAILRR 122
>gi|226308004|ref|YP_002767964.1| OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
gi|226187121|dbj|BAH35225.1| putative OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +++L+ +D+ + + L GY+V +G SA + + L++ D++MP
Sbjct: 1 MSQRRVLVVDDEVSICESIAARLRAEGYDVELAFDGPSAVTRCEQMDADLVVLDVMMPGF 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR + P + V+ +T A LSKPF +R LV V LL
Sbjct: 61 DGLEVCRRIQAVRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVQALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254389912|ref|ZP_05005135.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
ATCC 27064]
gi|326443028|ref|ZP_08217762.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|197703622|gb|EDY49434.1| transcriptional regulatory protein afsQ1 [Streptomyces clavuligerus
ATCC 27064]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|189024635|ref|YP_001935403.1| transcriptional regulator [Brucella abortus S19]
gi|306844522|ref|ZP_07477111.1| Protein petR [Brucella sp. BO1]
gi|189020207|gb|ACD72929.1| Transcriptional regulatory protein [Brucella abortus S19]
gi|306275133|gb|EFM56889.1| Protein petR [Brucella sp. BO1]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 15 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 75 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 130
>gi|168205030|ref|ZP_02631035.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|168212345|ref|ZP_02637970.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
gi|170663408|gb|EDT16091.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170716198|gb|EDT28380.1| DNA-binding response regulator [Clostridium perfringens CPE str.
F4969]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GY+V+ +NG + + L++ D+++PE++G+E
Sbjct: 3 KILIVEDEEKIARFIELELIHEGYKVIKADNGRTGLEIAERGEADLIILDVMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + ++ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIRRV-SEVPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|146281299|ref|YP_001171452.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501]
gi|145569504|gb|ABP78610.1| DNA-binding response regulator ColR [Pseudomonas stutzeri A1501]
gi|327479458|gb|AEA82768.1| DNA-binding response regulator ColR [Pseudomonas stutzeri DSM 4166]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L GY V +G S + + L++ DI++P +DG +
Sbjct: 2 RILVIEDNRDILANVLDYLELKGYLVDCAQDGLSGLHLAATQEYDLIVLDIMLPGIDGYQ 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +R E D ++ +T A+ L KPF L +LV + +L
Sbjct: 62 VCKRLREDARRDTPIIMLTARDALPDRIKGLEAGADDYLIKPFALSELVARIEAVL 117
>gi|26991188|ref|NP_746613.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|148546648|ref|YP_001266750.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|24986235|gb|AAN70077.1|AE016647_7 DNA-binding response regulator [Pseudomonas putida KT2440]
gi|148510706|gb|ABQ77566.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
gi|313497705|gb|ADR59071.1| Winged helix family two component transcriptional regulator
[Pseudomonas putida BIRD-1]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ L L + G+ V +C++G SA + E + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLGSWLTQEGFSVRACHDGQSARLALAEHAPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ +L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHAELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
Query: 121 KN 122
+
Sbjct: 120 SH 121
>gi|310826289|ref|YP_003958646.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
gi|308738023|gb|ADO35683.1| hypothetical protein ELI_0669 [Eubacterium limosum KIST612]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ L L GY++ +G A + V E L+L DI+MPEMD
Sbjct: 1 MN--ILICDDEREIVDALELYLKNEGYDIFKAYSGKEALEIVSENTIHLILMDIMMPEMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E ++ ++F++ A ++KPF+ +++ V L
Sbjct: 59 GIHATLKIRE-TANIPIIFLSAKAEDNDKIMGLTVGGDDYITKPFNPLEVIARVKSQLRR 117
>gi|293375525|ref|ZP_06621802.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
gi|325840212|ref|ZP_08166979.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
HGF1]
gi|292645865|gb|EFF63898.1| response regulator receiver domain protein [Turicibacter sanguinis
PC909]
gi|325490360|gb|EGC92685.1| putative transcriptional regulatory protein ResD [Turicibacter sp.
HGF1]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + F+ L GY+ ++G +A + + L+L D ++P++ G E
Sbjct: 2 RILMVDDEVKICEFVQACLDNEGYQTEVAHDGKTALSLFHQYTYDLILLDRMLPDVSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + D+ ++ +T + + KPF++ +L+ + +L
Sbjct: 62 ICKQIRQQ-SDIPIIMLTAKIEDEDRIEGFQLGCDDYICKPFNIMELLLRIKAILKR 117
>gi|284037439|ref|YP_003387369.1| transcriptional regulator [Spirosoma linguale DSM 74]
gi|283816732|gb|ADB38570.1| two component transcriptional regulator, winged helix family
[Spirosoma linguale DSM 74]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + + + + L + GY G + + LL+ DI +P ++G
Sbjct: 2 KKILIIEDDRRIAQNISRTLQEDGYATEVVYEGINGRQMALQPGVDLLILDINLPGINGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R P+L ++ +T + + L KPF +R+L+ V L
Sbjct: 62 EVCRSVRAEKPNLPIIMLTALGEIEDKVEGLGLGADDYLVKPFDIRELIARVEACLRR 119
>gi|229825423|ref|ZP_04451492.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
49176]
gi|229789986|gb|EEP26100.1| hypothetical protein GCWU000182_00782 [Abiotrophia defectiva ATCC
49176]
Length = 239
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ + GY+V + NG A +E L+L D++MP MDGI+
Sbjct: 11 ILVCDDEKDIVSAIKIYFEAEGYKVFTAENGKEALSIAAKEEIHLILMDVMMPVMDGIQT 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ E D + V+ +T + ++KPF+ +L+ +
Sbjct: 71 VRKLRE-DSIIPVIMLTAKSEDVDKVLGLGIGADDYVTKPFNPIELIARAKSQIRR 125
>gi|116750532|ref|YP_847219.1| two component sigma54 specific Fis family transcriptional regulator
[Syntrophobacter fumaroxidans MPOB]
gi|116699596|gb|ABK18784.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Syntrophobacter fumaroxidans MPOB]
Length = 458
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD + + L + V+ +G A D ++ L++TD+ MP M G
Sbjct: 4 KRTILVVDDDLHILEVIEARLSSMDFRVLKATSGQEALDLLKAGAVDLVITDVRMPGMGG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L L V+F+T + ++ + L+KPF RDLV +V +L
Sbjct: 64 MDLFHEIQTFHAGLPVIFLTAYGTISDAVKAVKAGAVDYLTKPFDGRDLVLKVKEILR 121
>gi|322805157|emb|CBZ02721.1| phosphate regulon transcriptional regulatory protein PhoB (SphR)
[Clostridium botulinum H04402 065]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+R + L G V + NG A D ++ L++ DI+MP+MDGI+
Sbjct: 6 ILVVDDDKDIRDMINIYLVNQGMNVYTAANGIEALDILKNIKVDLIILDIMMPKMDGIKA 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E+ ++ ++ ++ A + KPF +L+ + L
Sbjct: 66 CMKIREML-NVPIIILSAKIDEADKILGLTIGADDYVGKPFSPLELLARIKSQLRR 120
>gi|332160502|ref|YP_004297079.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|318607030|emb|CBY28528.1| two-component response regulator CreB [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325664732|gb|ADZ41376.1| DNA-binding response regulator CreB [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330863453|emb|CBX73572.1| transcriptional regulatory protein creB [Yersinia enterocolitica
W22703]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + P +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR P+L V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRILVQVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRR 120
>gi|315442360|ref|YP_004075239.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
gi|315260663|gb|ADT97404.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Mycobacterium sp. Spyr1]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRSR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|298479885|ref|ZP_06998084.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298273694|gb|EFI15256.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1372
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + +EV++ NG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + V+ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230
>gi|237721900|ref|ZP_04552381.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229448769|gb|EEO54560.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1372
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + +EV++ NG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + V+ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230
>gi|160884678|ref|ZP_02065681.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
gi|156109713|gb|EDO11458.1| hypothetical protein BACOVA_02667 [Bacteroides ovatus ATCC 8483]
Length = 1372
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + +EV++ NG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + V+ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230
>gi|153008974|ref|YP_001370189.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|151560862|gb|ABS14360.1| two component transcriptional regulator, winged helix family
[Ochrobactrum anthropi ATCC 49188]
Length = 235
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 15 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 75 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 130
>gi|78183896|ref|YP_376330.1| two component transcriptional regulator [Synechococcus sp. CC9902]
gi|78168190|gb|ABB25287.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9902]
Length = 259
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|330504485|ref|YP_004381354.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
gi|328918771|gb|AEB59602.1| DNA-binding response regulator [Pseudomonas mendocina NK-01]
Length = 218
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL GY V +GASA + E F L + D+ +P MDG++
Sbjct: 2 RILLVEDDQALGEGIRTALKPEGYTVDWLQDGASALHALSHESFELAILDLGLPRMDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T A + L KPF + +L + LL
Sbjct: 62 VLKHLQAAANPVPVLVLTARDATSDRIAGLDAGADDYLIKPFDVAELKARLRALLRR 118
>gi|307943679|ref|ZP_07659023.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
gi|307773309|gb|EFO32526.1| transcriptional regulatory protein ChvI [Roseibium sp. TrichSKD4]
Length = 236
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD ++ + AL KAGY V +G +A + F ++ D+ +PE+DG+
Sbjct: 2 KSILVVEDDRNISDVICFALEKAGYRAVVAPDGLAAVTTFKGSSFDFIVLDVGLPELDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ + ++ ++F++ ++KPF R+LV V+ +L
Sbjct: 62 EVCRQIRCM-SEVPILFLSARDEEIDRILGLEIGGDDYVTKPFSPRELVARVSAILRR 118
>gi|255690627|ref|ZP_05414302.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623650|gb|EEX46521.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1353
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 2 NQKI-----LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
N++I L+ ED++ +++ L+ Y+V + ++G A +KVREE S++L+D+VM
Sbjct: 1088 NKRIEDAKMLIVEDNESIKQMLVSIFETF-YQVTTASDGEEALEKVREEMPSIILSDVVM 1146
Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
P M G EL +R + V+ +T A+ N + ++KPF+ L++
Sbjct: 1147 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1206
Query: 115 NRLLTIK 121
N L+ +
Sbjct: 1207 NNLVNSR 1213
>gi|170755428|ref|YP_001779912.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|226947489|ref|YP_002802580.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|169120640|gb|ACA44476.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|226843713|gb|ACO86379.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|322804530|emb|CBZ02081.1| two-component response regulator [Clostridium botulinum H04402 065]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ + + L GY V+ +G A K E +LL+ D+++P++
Sbjct: 1 MKETILVIDDEVKIIEVIKLYLENEGYTVIQATSGIEALKKQSEFNPNLLILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++ + + + ++KPF + LV +VN +L
Sbjct: 61 GENVCERIRKE-SEVPIIMLTAKSSEDSILNGYSIGSDDYITKPFSPKQLVAKVNAVLKR 119
>gi|148380258|ref|YP_001254799.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153932647|ref|YP_001384564.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153936330|ref|YP_001388080.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148289742|emb|CAL83848.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152928691|gb|ABS34191.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152932244|gb|ABS37743.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V NNG + + ++ L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKDEADLVLLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|156743599|ref|YP_001433728.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156234927|gb|ABU59710.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD + L AGY V+ + A + + L+L D+ MP++ G ++
Sbjct: 3 ILVADDDLASVKLTSFLLEDAGYRVIKAYDAAGVLHAIEQRTPDLVLLDVGMPKVSGFDI 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R+ + D+ ++F+TG + L KPF +L+ V +L +N
Sbjct: 63 CRQIRRM-SDVPIIFVTGSGQLQDRVTGLQIGGDDYLVKPFEPAELLARVEAVLRRRN 119
>gi|29377731|ref|NP_816885.1| DNA-binding response regulator [Enterococcus faecalis V583]
gi|227518155|ref|ZP_03948204.1| response regulator [Enterococcus faecalis TX0104]
gi|227555640|ref|ZP_03985687.1| response regulator [Enterococcus faecalis HH22]
gi|229547174|ref|ZP_04435899.1| response regulator protein [Enterococcus faecalis TX1322]
gi|229550744|ref|ZP_04439469.1| response regulator [Enterococcus faecalis ATCC 29200]
gi|255971507|ref|ZP_05422093.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|255974457|ref|ZP_05425043.1| DNA-binding response regulator [Enterococcus faecalis T2]
gi|256618570|ref|ZP_05475416.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
gi|256761812|ref|ZP_05502392.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256957058|ref|ZP_05561229.1| DNA-binding response regulator [Enterococcus faecalis DS5]
gi|256960922|ref|ZP_05565093.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
gi|256963940|ref|ZP_05568111.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
gi|257078735|ref|ZP_05573096.1| DNA-binding response regulator [Enterococcus faecalis JH1]
gi|257081305|ref|ZP_05575666.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
gi|257083963|ref|ZP_05578324.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
gi|257087793|ref|ZP_05582154.1| DNA-binding response regulator [Enterococcus faecalis D6]
gi|257088438|ref|ZP_05582799.1| two component system response regulator [Enterococcus faecalis
CH188]
gi|257417380|ref|ZP_05594374.1| DNA-binding response regulator [Enterococcus faecalis AR01/DG]
gi|257418883|ref|ZP_05595877.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|257421302|ref|ZP_05598292.1| DNA-binding response regulator [Enterococcus faecalis X98]
gi|293384817|ref|ZP_06630662.1| regulatory protein VanR [Enterococcus faecalis R712]
gi|293388239|ref|ZP_06632758.1| regulatory protein VanR [Enterococcus faecalis S613]
gi|294781206|ref|ZP_06746553.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
gi|300861487|ref|ZP_07107571.1| response regulator receiver domain protein [Enterococcus faecalis
TUSoD Ef11]
gi|307268869|ref|ZP_07550234.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
gi|307273944|ref|ZP_07555154.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
gi|307283993|ref|ZP_07564163.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
gi|307286511|ref|ZP_07566610.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
gi|307289984|ref|ZP_07569910.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
gi|312901344|ref|ZP_07760625.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
gi|312902991|ref|ZP_07762180.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
gi|312908859|ref|ZP_07767798.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
gi|312952977|ref|ZP_07771833.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
gi|312979498|ref|ZP_07791180.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
gi|29345199|gb|AAO82955.1| DNA-binding response regulator [Enterococcus faecalis V583]
gi|44934164|gb|AAS49401.1| response regulator [Enterococcus faecalis]
gi|227074398|gb|EEI12361.1| response regulator [Enterococcus faecalis TX0104]
gi|227175217|gb|EEI56189.1| response regulator [Enterococcus faecalis HH22]
gi|229304177|gb|EEN70173.1| response regulator [Enterococcus faecalis ATCC 29200]
gi|229307756|gb|EEN73743.1| response regulator protein [Enterococcus faecalis TX1322]
gi|255962525|gb|EET95001.1| DNA-binding response regulator [Enterococcus faecalis T1]
gi|255967329|gb|EET97951.1| DNA-binding response regulator [Enterococcus faecalis T2]
gi|256598097|gb|EEU17273.1| DNA-binding response regulator [Enterococcus faecalis ATCC 4200]
gi|256683063|gb|EEU22758.1| DNA-binding response regulator [Enterococcus faecalis T3]
gi|256947554|gb|EEU64186.1| DNA-binding response regulator [Enterococcus faecalis DS5]
gi|256951418|gb|EEU68050.1| DNA-binding response regulator [Enterococcus faecalis Merz96]
gi|256954436|gb|EEU71068.1| DNA-binding response regulator [Enterococcus faecalis HIP11704]
gi|256986765|gb|EEU74067.1| DNA-binding response regulator [Enterococcus faecalis JH1]
gi|256989335|gb|EEU76637.1| DNA-binding response regulator [Enterococcus faecalis E1Sol]
gi|256991993|gb|EEU79295.1| DNA-binding response regulator [Enterococcus faecalis Fly1]
gi|256995823|gb|EEU83125.1| DNA-binding response regulator [Enterococcus faecalis D6]
gi|256997250|gb|EEU83770.1| two component system response regulator [Enterococcus faecalis
CH188]
gi|257159208|gb|EEU89168.1| DNA-binding response regulator [Enterococcus faecalis ARO1/DG]
gi|257160711|gb|EEU90671.1| DNA-binding response regulator [Enterococcus faecalis T11]
gi|257163126|gb|EEU93086.1| DNA-binding response regulator [Enterococcus faecalis X98]
gi|291077899|gb|EFE15263.1| regulatory protein VanR [Enterococcus faecalis R712]
gi|291082386|gb|EFE19349.1| regulatory protein VanR [Enterococcus faecalis S613]
gi|294451669|gb|EFG20124.1| putative regulatory protein VanR [Enterococcus faecalis PC1.1]
gi|295112307|emb|CBL30944.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Enterococcus sp. 7L76]
gi|300848948|gb|EFK76701.1| response regulator receiver domain protein [Enterococcus faecalis
TUSoD Ef11]
gi|306498978|gb|EFM68470.1| putative regulatory protein VanR [Enterococcus faecalis TX0411]
gi|306502384|gb|EFM71661.1| putative regulatory protein VanR [Enterococcus faecalis TX0109]
gi|306503364|gb|EFM72613.1| putative regulatory protein VanR [Enterococcus faecalis TX0860]
gi|306509252|gb|EFM78312.1| putative regulatory protein VanR [Enterococcus faecalis TX0855]
gi|306514785|gb|EFM83335.1| putative regulatory protein VanR [Enterococcus faecalis TX4248]
gi|310625297|gb|EFQ08580.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 512]
gi|310629118|gb|EFQ12401.1| putative regulatory protein VanR [Enterococcus faecalis TX0102]
gi|310633659|gb|EFQ16942.1| putative regulatory protein VanR [Enterococcus faecalis TX0635]
gi|311287680|gb|EFQ66236.1| putative regulatory protein VanR [Enterococcus faecalis DAPTO 516]
gi|311291577|gb|EFQ70133.1| putative regulatory protein VanR [Enterococcus faecalis TX0470]
gi|315026614|gb|EFT38546.1| putative regulatory protein VanR [Enterococcus faecalis TX2137]
gi|315033601|gb|EFT45533.1| putative regulatory protein VanR [Enterococcus faecalis TX0017]
gi|315036266|gb|EFT48198.1| putative regulatory protein VanR [Enterococcus faecalis TX0027]
gi|315143581|gb|EFT87597.1| putative regulatory protein VanR [Enterococcus faecalis TX2141]
gi|315148281|gb|EFT92297.1| putative regulatory protein VanR [Enterococcus faecalis TX4244]
gi|315151246|gb|EFT95262.1| putative regulatory protein VanR [Enterococcus faecalis TX0012]
gi|315153731|gb|EFT97747.1| putative regulatory protein VanR [Enterococcus faecalis TX0031]
gi|315155043|gb|EFT99059.1| putative regulatory protein VanR [Enterococcus faecalis TX0043]
gi|315158668|gb|EFU02685.1| putative regulatory protein VanR [Enterococcus faecalis TX0312]
gi|315163391|gb|EFU07408.1| putative regulatory protein VanR [Enterococcus faecalis TX0645]
gi|315165670|gb|EFU09687.1| putative regulatory protein VanR [Enterococcus faecalis TX1302]
gi|315168477|gb|EFU12494.1| putative regulatory protein VanR [Enterococcus faecalis TX1341]
gi|315172094|gb|EFU16111.1| putative regulatory protein VanR [Enterococcus faecalis TX1342]
gi|315174227|gb|EFU18244.1| putative regulatory protein VanR [Enterococcus faecalis TX1346]
gi|315576189|gb|EFU88380.1| putative regulatory protein VanR [Enterococcus faecalis TX0309B]
gi|315579768|gb|EFU91959.1| putative regulatory protein VanR [Enterococcus faecalis TX0630]
gi|315583000|gb|EFU95191.1| putative regulatory protein VanR [Enterococcus faecalis TX0309A]
gi|323479197|gb|ADX78636.1| response regulator protein, vanR type [Enterococcus faecalis 62]
gi|327536388|gb|AEA95222.1| response regulator [Enterococcus faecalis OG1RF]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+A+DD ++ L + GYEVV +G A K+ P LL+ DI+MP MDG+
Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ +T ++KPF+ +++ V +L
Sbjct: 62 EVVKELRKE-SQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118
>gi|194429158|ref|ZP_03061687.1| transcriptional regulatory protein CreB [Escherichia coli B171]
gi|194412773|gb|EDX29066.1| transcriptional regulatory protein CreB [Escherichia coli B171]
gi|323163220|gb|EFZ49052.1| transcriptional regulatory protein creB [Escherichia coli E128010]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|332296523|ref|YP_004438446.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
gi|332179626|gb|AEE15315.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +IL+ ED+ ++ R+L L GY V + +NG A E+ F L+L D+++P
Sbjct: 1 MEKEYRILVVEDEYNLARYLQLELEHEGYLVDTADNGYEAIGLFSEKDFDLVLLDLMIPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ +R D+ ++ +T AV ++KPF + +L+ + L
Sbjct: 61 IDGFEVCKRMKAQ-KDVAIIILTARDAVKDKVKGLDLGADDYVTKPFVIEELIARIRARL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|294777730|ref|ZP_06743178.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294448409|gb|EFG16961.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1350
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1089 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1147
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1148 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207
Query: 120 IK 121
+
Sbjct: 1208 SR 1209
>gi|288919562|ref|ZP_06413892.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
gi|288349068|gb|EFC83315.1| two component transcriptional regulator, winged helix family
[Frankia sp. EUN1f]
Length = 243
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/106 (31%), Positives = 50/106 (47%)
Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74
R L ++L GYEV + +G A D V E +++ D++MP MDG+E RR D
Sbjct: 13 RESLERSLRFEGYEVRTAADGVDALDLVGREQLDIVVLDVMMPRMDGLETCRRLRGRGND 72
Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T A+A L KPF L +L + L+
Sbjct: 73 VPVLMLTARDALADRVSGLDVGADDYLVKPFALEELFARLRALIRR 118
>gi|66731643|gb|AAY52009.1| VanR [Paenibacillus apiarius]
Length = 231
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ + L Y V A + + + L + DI++P
Sbjct: 1 MSDKILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGAS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++KPF +L+ V L
Sbjct: 61 GLAICQKIRDKH-TYPIITLTAKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRR 119
>gi|77456488|ref|YP_345993.1| osmolarity response regulator [Pseudomonas fluorescens Pf0-1]
gi|77380491|gb|ABA72004.1| DNA-binding response regulator [Pseudomonas fluorescens Pf0-1]
Length = 246
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFVSKGYRARAVPNTEQMDRLLSREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 TACRRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|68536723|ref|YP_251428.1| two-component system response regulator MtrA [Corynebacterium
jeikeium K411]
gi|68264322|emb|CAI37810.1| two-component system response regulator MtrA [Corynebacterium
jeikeium K411]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+ V +G A E L+L D+++P M+
Sbjct: 1 METKILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
GI++ + E + ++ +T + KPF ++
Sbjct: 61 GIDVCKAIRE-TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 108
>gi|75759276|ref|ZP_00739375.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228903343|ref|ZP_04067474.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
gi|228910680|ref|ZP_04074491.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|74493225|gb|EAO56342.1| Two-component response regulator [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228848948|gb|EEM93791.1| Two-component response regulator [Bacillus thuringiensis IBL 200]
gi|228856304|gb|EEN00833.1| Two-component response regulator [Bacillus thuringiensis IBL 4222]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++R+ + L GYEV+ +G + V++ L++ DI+MP++DGI
Sbjct: 14 TILIVDDEKEIRKLITIYLKNEGYEVLQAGDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 74 MCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129
>gi|332885682|gb|EGK05928.1| hypothetical protein HMPREF9456_02192 [Dysgonomonas mossii DSM
22836]
Length = 377
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D L L K G+ VV+ N+G +A + +R++ L+L DI MP MDG E
Sbjct: 9 TILVVDDVMTNVLLLQVLLDKEGFNVVTANDGQAAIEIIRKDVPDLILLDINMPNMDGFE 68
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L ++ V+F+T V + ++KPF+ +L+ + L++
Sbjct: 69 VIREVKKYSLYREIPVIFLTAMNDVDSIVKGFRLGGSDYITKPFNKEELMARIVHQLSL 127
>gi|325273777|ref|ZP_08139968.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324101090|gb|EGB98745.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 210
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD ++R L L ++G++V + +GA + P L++ D+++P+ DG
Sbjct: 6 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGAGFRRALDSSPCDLVILDVMLPDEDGF 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + A L KPF R+L + LL
Sbjct: 66 SLCRWVRQHPRRARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARLKALLRR 125
>gi|325970799|ref|YP_004246990.1| transcriptional regulator [Spirochaeta sp. Buddy]
gi|324026037|gb|ADY12796.1| two component transcriptional regulator, winged helix family
[Spirochaeta sp. Buddy]
Length = 239
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + ED + +R + + L +GY V N SA + + SLL+ D+++P+ DG
Sbjct: 12 IYIVEDHEVIREGVRQYLELSGYAVRGFANLKSAREAFATQTPSLLIQDVMLPDGDGFAF 71
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI-KN 122
++ E D V+F+T + +SKPF ++LV V +L +N
Sbjct: 72 VKQLKEKT-DCPVIFMTARTEESDRILGFELGADDYISKPFSPKELVLRVQAVLRRYRN 129
>gi|308176319|ref|YP_003915725.1| two-component system response regulator [Arthrobacter arilaitensis
Re117]
gi|307743782|emb|CBT74754.1| two-component system response regulator [Arthrobacter arilaitensis
Re117]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++ + L L + G+EV ++G A + L+L D+++P G E
Sbjct: 3 RILIVEDEESLSDPLSYLLEREGFEVRIADDGLKAVTEFERHGADLVLLDLMLPGQPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ L+ + V+ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VIRQIR-LNSQVPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELLARIRAVLRRQ 119
>gi|302671203|ref|YP_003831163.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302395676|gb|ADL34581.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+A+D+ ++R L L GY V +G A + SL L D++MPEMD
Sbjct: 1 MMDKILIADDETEIRSLLKLYLENEGYAVAEAGDGQEALKILAGGDISLCLLDVMMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ V+ I+ + KPF+ + V V L
Sbjct: 61 GFHVLKEMRKNN-NIPVIIISARDTDPDKILGLDLGADDYMIKPFNPLEAVARVRSNLRR 119
>gi|269128318|ref|YP_003301688.1| winged helix family two component transcriptional regulator
[Thermomonospora curvata DSM 43183]
gi|268313276|gb|ACY99650.1| two component transcriptional regulator, winged helix family
[Thermomonospora curvata DSM 43183]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD + L +AL + GY V +G A ++ L++ D+ +PE+DG+E+
Sbjct: 4 VLLAEDDTSISEPLARALRREGYTVEVSPDGPQALERALGGGVDLIVLDLGLPELDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR + ++ +T A ++KPF L +L+ V LL
Sbjct: 64 ARRVRSEGHGVPILILTARADEVDTVVGLDAGADDYVTKPFRLAELLARVRALLRR 119
>gi|311746015|ref|ZP_07719800.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
gi|126576231|gb|EAZ80509.1| DNA-binding response regulator RprY [Algoriphagus sp. PR1]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+K +LLAED+ + + ++L ++V+ C+NG A++K + E +L+ D++MP+
Sbjct: 1 MNEKTTVLLAEDEIALGTIIQESLESRDFKVILCSNGEIAWEKYKSEQPEVLVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA + ++DP ++F+T + KPF + +L+ ++ L
Sbjct: 61 KDGFTLAEQIRKIDPFTPIIFLTSKGQTEDVVKGFGHGGNDYVRKPFSMEELIVRIHAQL 120
Query: 119 TIK 121
+
Sbjct: 121 DRR 123
>gi|152998342|ref|YP_001343177.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150839266|gb|ABR73242.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 244
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63
I + +DDD++R L L K + V++ ++G + R E+ L++ DI++P DG
Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + L+KPF+ R+L+ + +L
Sbjct: 67 VCRSLRTQ-SQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRR 122
>gi|58698225|ref|ZP_00373145.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630041|ref|YP_002726832.1| response regulator PleD [Wolbachia sp. wRi]
gi|58535252|gb|EAL59331.1| response regulator/GGDEF domain protein [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592022|gb|ACN95041.1| response regulator PleD [Wolbachia sp. wRi]
Length = 458
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D + L L Y V+ ++G A D V ++ ++L DI+MP+M+
Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + L + ++ +T L+KP + L + L
Sbjct: 61 GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 67.5 bits (165), Expect = 6e-10, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ++D + L + + ++ A ++ + L+++D+ + DG+ L
Sbjct: 159 ILVVDEDVFQAEQIYNVLKQRFRSIKILSDPIEALKVGIKDNYDLIISDMQFSKTDGLRL 218
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ + L+ P +L+ VN + K
Sbjct: 219 CSGFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKRK 277
>gi|331271106|ref|YP_004385815.1| two component transcriptional (response) regulator [Clostridium
botulinum BKT015925]
gi|329127601|gb|AEB77543.1| Two component transcriptional (response) regulator [Clostridium
botulinum BKT015925]
Length = 230
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D++D+ + L + V + + +A + + E F L++ DI+MPEMD
Sbjct: 1 MKNKILVIDDNEDICTTIKSYLENYDFNVKTVTSCRNALNILNE-KFDLIILDIMMPEMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + ++F++ + A ++KPF L++L + L
Sbjct: 60 GIEFCSIIRKKVS-CPILFVSAKILEEDKLQAFAIGGDDYITKPFSLKELKARIESHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|317476289|ref|ZP_07935539.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316907563|gb|EFV29267.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 238
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED++ + + L + + + +G + +L+ D++MP M
Sbjct: 1 MDKIKVLLVEDEETLAMIIKDTLEGQNFIINTATDGEEGLRLFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKYTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIVRIKAL 118
>gi|270262846|ref|ZP_06191117.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270043530|gb|EFA16623.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL AG+ V +G +A + E ++L++ D+ +P ++G++
Sbjct: 2 RLLLVEDHPELSHWLQKALTGAGFAVDIAPDGLAADHLLLNERYALVVLDVALPRLNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + DL V+ +T VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRR 118
>gi|284034649|ref|YP_003384580.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283813942|gb|ADB35781.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + R L L YEV G +A + P L++ D+ +P++D
Sbjct: 1 MT-RVLVVDDEPQIVRALQINLKARRYEVHVAGTGTAALQVAAQHPPDLVILDLGLPDLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + ++ ++G ++ ++KPF + +L+ + L
Sbjct: 60 GIEVIRGLRG-WTEAPILVLSGRTDSTDKVEALDAGADDYVTKPFGIDELLARMRAALRR 118
Query: 121 KN 122
+
Sbjct: 119 SS 120
>gi|172039096|ref|YP_001805597.1| two-component response regulator [Cyanothece sp. ATCC 51142]
gi|171700550|gb|ACB53531.1| two-component response regulator [Cyanothece sp. ATCC 51142]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ ILL +D+ +R + L +G V +N A+ + + ++++DI+MPE+D
Sbjct: 4 SATILLVDDEPSVRESVQAYLEYSGDLTVKVASNATDAWRILEKITPDVIISDIMMPEVD 63
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + + + V+F+T + L KPF +L V LL
Sbjct: 64 GYQFLEKLRDDPRFQGIPVIFLTARGMTSDRIKGYNSGCDAYLPKPFDPEELEAIVKNLL 123
Query: 119 TIK 121
+
Sbjct: 124 ERR 126
>gi|221069624|ref|ZP_03545729.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
gi|220714647|gb|EED70015.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
Length = 249
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L + G + +G A R+ L+L DI +P++DG+++
Sbjct: 22 VLVVEDEPAIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D D+ V+ +T A + + KPF+ ++V V +L
Sbjct: 82 LRMIRN-DSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136
>gi|86606963|ref|YP_475726.1| response regulator [Synechococcus sp. JA-3-3Ab]
gi|86555505|gb|ABD00463.1| response regulator [Synechococcus sp. JA-3-3Ab]
Length = 344
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D R L L GY V NG A + L+L D++MP +DG E
Sbjct: 28 HLLIVDDQPHSRLLLGDLLESIGYRVSEAENGQQALQMLPSLQPDLVLLDVMMPGLDGFE 87
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E + V+ I + LSKPF +L+ V L+ K
Sbjct: 88 VCRRIKADEETRLIPVVLIAAASDRKNRLRGIEAGADDFLSKPFDESELLARVRSLVRQK 147
Query: 122 N 122
+
Sbjct: 148 H 148
>gi|87125700|ref|ZP_01081544.1| two-component response regulator [Synechococcus sp. RS9917]
gi|86166676|gb|EAQ67939.1| two-component response regulator [Synechococcus sp. RS9917]
Length = 246
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I + +DD ++R+ + L GYEV ++ ++ + L++ D++MP
Sbjct: 6 MTRTTMIWVVDDDPELRQMVGTYLIDQGYEVRCLSDVKQFEARLDFQRPDLVVLDLMMPG 65
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ RR + D DL V+ +T L+KPF R+L + +L
Sbjct: 66 DDGLTALRRLRDADDDLPVVMLTAKGDGIDRIIGLEQGADDYLAKPFLPRELSARIEAVL 125
Query: 119 TIK 121
+
Sbjct: 126 RRR 128
>gi|332995574|gb|AEF05629.1| two-component response regulator [Alteromonas sp. SN2]
Length = 297
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 51/114 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L AL G+ + NG A V + ++L D VMPEMDG E
Sbjct: 8 VLVVDDSPESLGMLNVALNTQGFTALVALNGIQALAIVEKVKPDVVLLDAVMPEMDGFET 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R ++ P+ ++F+TG + ++KP +++ + +
Sbjct: 68 CKRLKKILPNTPIIFMTGLTEIDDVVKGFDAGGIDYVTKPISPDEVIARIKTHI 121
>gi|260221381|emb|CBA29886.1| Transcriptional activator protein copR [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +A + V +NG E+ L++ D+++P MDG E
Sbjct: 2 KILIIEDEPKTGEYLRQGLKEASFIVDLLHNGNDGLHAALEDEHDLIILDVMLPGMDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+F+T V L KPF +L+ V +L
Sbjct: 62 VMRNLRRKGNEVPVLFLTARDQVEDRIKGLELGADDYLVKPFSFAELLARVRTILRR 118
>gi|52425301|ref|YP_088438.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
gi|52307353|gb|AAU37853.1| OmpR protein [Mannheimia succiniciproducens MBEL55E]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL EDD + + L K+G+ V +G + ++ P+ ++ D+ +P MD
Sbjct: 4 MMMRILLIEDDALIGNGIKVGLTKSGFSVDWFTDGKTGLQAIKSAPYDAVVLDLTLPGMD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ D V+ +T + L KPF L +++ + L+
Sbjct: 64 GMDILQQWRNEKIDTPVLILTARDTLNDRVTGLQRGADDYLCKPFALAEVIARLQALIRR 123
Query: 121 K 121
+
Sbjct: 124 R 124
>gi|313897646|ref|ZP_07831188.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
HGF2]
gi|312957598|gb|EFR39224.1| KDP operon transcriptional regulatory protein KdpE [Clostridium sp.
HGF2]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL EDD + RFL +L K GY+V+ NG + L+L D+ +P++D
Sbjct: 1 MHDKILLIEDDASIIRFLSLSLDKNGYKVIEARNGIEGISLFMSDNPDLILLDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ ++ ++ ++ ++ ++KPFH+ +L+ V L
Sbjct: 61 GSEVLRQIRSQ-SEVPILVVSARGQEREKVEALDLGADDYVTKPFHINELLARVRVALRK 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|110834570|ref|YP_693429.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
gi|110647681|emb|CAL17157.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED + L+ L + GY V +G A + ++PF L++ D+ +P +DG++
Sbjct: 2 RILLVEDSIALADQLMPMLREHGYAVDWLADGRDALPALNDDPFDLVILDLGLPGLDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + V+ +T + A + L+KPFH +L+ V LL +
Sbjct: 62 VLEQWRVEGQAVPVLILTARDSWAERIEGLQSGADDYLAKPFHPDELLLRVQALLRRTH 120
>gi|163943206|ref|YP_001642436.1| two component transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163865403|gb|ABY46461.1| two component transcriptional regulator, winged helix family
[Bacillus weihenstephanensis KBAB4]
Length = 221
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y V ++G + ++ F L+L D++MP ++G
Sbjct: 3 NHHILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+A+ ++ V+ +T ++KPF L+ V +L
Sbjct: 63 FEVAKMIRSQ-SNVPVIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|88798651|ref|ZP_01114235.1| Two component Transcriptional regulator, Winged helix family
protein [Reinekea sp. MED297]
gi|88778751|gb|EAR09942.1| Two component Transcriptional regulator, Winged helix family
protein [Reinekea sp. MED297]
Length = 224
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + ++++ L +AGY SC +G A + E + L++ D ++P +DG+
Sbjct: 2 KILVVEDDRTLADYIVRGLTEAGYRADSCTDGKDALYRAAAEDYDLIILDRMLPSVDGMT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L V+ ++ + V + + L+KPF +L+ V LL
Sbjct: 62 ILRTLRASNKTLPVLILSALSDVDQRVEGLSAGADDYLTKPFAFAELLARVQVLLRR 118
>gi|332304516|ref|YP_004432367.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|332171845|gb|AEE21099.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 239
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD D+ + L + G E+ +G A + E +S++L D+++P M+
Sbjct: 1 MTDRILIVEDDLDIANLMRVNLLELGVEIDHQTDGQLALTQALENDYSVILLDVMLPNMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ R+ + P ++ +T + ++KPF +R+L V L
Sbjct: 61 GLDICRQIRDKRPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLR 119
>gi|292486824|ref|YP_003529694.1| putative transcriptional regulator Ycf27 [Erwinia amylovora
CFBP1430]
gi|291552241|emb|CBA19278.1| probable transcriptional regulator ycf27 [Erwinia amylovora
CFBP1430]
gi|312170892|emb|CBX79151.1| probable transcriptional regulator ycf27 [Erwinia amylovora ATCC
BAA-2158]
Length = 251
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD +++ L AL GY V N A ++ +SL++ D+ +P+ DG +
Sbjct: 34 KILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGAD 93
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + DL V+ ++ A++ D L KPF L +L V L+
Sbjct: 94 LLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRR 150
>gi|291548314|emb|CBL21422.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R ++ L Y+ ++ NGASA + ++L D+ +P+M
Sbjct: 1 MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGASAILEASSHNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+G+E+ ++ ++ ++ I+ + ++ ++KPF + +L+ +
Sbjct: 61 EGVEVIKKIR-TWSNMPIIVISARSEDMDKIEALDAGADDYITKPFSVEELLARIR 115
>gi|257865841|ref|ZP_05645494.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
gi|257872176|ref|ZP_05651829.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
gi|257799775|gb|EEV28827.1| vancomycin response regulator [Enterococcus casseliflavus EC30]
gi|257806340|gb|EEV35162.1| vancomycin response regulator [Enterococcus casseliflavus EC10]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ ++ + L + V++C +G A ++ + FSL + D+++P++ G
Sbjct: 2 EKILLVEDEKEISDLIAFYLRNENFSVITCADGHEAQVQIEQNSFSLAILDVMLPDITGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + + ++ +T + ++KPF +++ V +
Sbjct: 62 DLCKIIRKKH-HYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRR 118
>gi|229007521|ref|ZP_04165116.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
gi|228753659|gb|EEM03102.1| DNA-binding response regulator [Bacillus mycoides Rock1-4]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + L GYEV++ +G A + EE ++L+ D+++P+ DG E
Sbjct: 2 KILVVDDESSIRNLIRMQLEMEGYEVLTAADGKEALQRWDEE-PNVLILDVMLPDTDGYE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 61 LLRLFREKDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 117
>gi|225575437|ref|ZP_03784047.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
10507]
gi|225037382|gb|EEG47628.1| hypothetical protein RUMHYD_03527 [Blautia hydrogenotrophica DSM
10507]
Length = 226
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ D+ L K L Y V +C +G A D + + ++ DI+MP+++G++
Sbjct: 2 RILIAEDEKDLNVLLKKRLENQKYSVDACCDGEEALDYLAVTEYDAVVLDIMMPKINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ + V+ +T ++ L KPF +L+ + +L
Sbjct: 62 VLQKIRKEGTSTPVLLLTAKDSIEDRVTGLDLGADDYLVKPFAFEELLARIRVMLR 117
>gi|222085311|ref|YP_002543841.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221722759|gb|ACM25915.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 223
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L AL +AGY V + +G + EP+ ++ DI +PEMDGI
Sbjct: 2 RILIVEDDINLNRQLADALKEAGYVVDTAFDGEEGHFLGDTEPYDAIILDIGLPEMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRGTPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118
>gi|163815559|ref|ZP_02206932.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
gi|158449196|gb|EDP26191.1| hypothetical protein COPEUT_01726 [Coprococcus eutactus ATCC 27759]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ + L AGY V NG A D V + L+L D++MP+MDGI
Sbjct: 4 ILICDDEKDIVSAIEIYLKTAGYSVYKAYNGKEAVDMVNAKDIQLVLMDVMMPQMDGITA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ V+ +T + ++KPF+ +L+ V L
Sbjct: 64 MAKIRE-NSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118
>gi|160933152|ref|ZP_02080541.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
gi|156868226|gb|EDO61598.1| hypothetical protein CLOLEP_01995 [Clostridium leptum DSM 753]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + + L Y+ + NG+ A +V +++ D+ +P+MDG++
Sbjct: 5 KVLVVEDDAAISNLIRTTLETQEYQYHTAQNGSGALMEVVSYHPDVVILDLGLPDMDGVD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ + ++ ++ D+ L+KPF + + + + L +
Sbjct: 65 IIKKIRS-FSTMPIIVVSARTEDQDKVDALDAGADDYLTKPFSIDEFLARLRVALRRSH 122
>gi|153805826|ref|ZP_01958494.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
gi|149130503|gb|EDM21709.1| hypothetical protein BACCAC_00063 [Bacteroides caccae ATCC 43185]
Length = 1376
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
ILL +D+ ++ L + K Y ++ +G A DK ++++D++MP M+G
Sbjct: 1131 KPTILLVDDNHEILMILREYFVK-DYNIIMAIDGQEALDKCNRSLPDIIISDVMMPRMNG 1189
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL + + ++ +T + V + + KPF+ R L V LL
Sbjct: 1190 IELCATLKKNLQTCFIPIILLTAKSQVEDQIEGIEMGADAYIPKPFNPRLLKANVRNLLN 1249
Query: 120 IKN 122
+
Sbjct: 1250 KSH 1252
>gi|89054785|ref|YP_510236.1| two component transcriptional regulator [Jannaschia sp. CCS1]
gi|88864334|gb|ABD55211.1| two component transcriptional regulator, winged helix family
[Jannaschia sp. CCS1]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R L + G++VV+ G A VRE P +++ D ++P + GIE+
Sbjct: 7 VLVVEDEPAQREVLAYNIRAEGFDVVTAAAGDEALVAVRETPPDVIVLDWMLPHVSGIEV 66
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ ++ + ++KP+ + +L+ + L
Sbjct: 67 CRQLKMGSETKKIPVIMLSARSEDTDKVRGLETGADDYITKPYSVAELLARLRTQLRR 124
>gi|325684242|gb|EGD26417.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
lactis DSM 20072]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRATGDKTYIMMLTAKSEIDDRVTGLDVGADDYLTKPFSLKELLARLR 113
>gi|318079812|ref|ZP_07987144.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL EDD+ +RR + L + G+EV + +G +++ D ++P MD
Sbjct: 1 MS-RVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMD 59
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ RR + ++ +T + KP R L + +L
Sbjct: 60 GLEVCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|289705357|ref|ZP_06501753.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
gi|289557872|gb|EFD51167.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
Length = 254
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L G+EV+ ++GA+A + L + D+++P+MDG++
Sbjct: 32 RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGAAGRPDLAILDVMLPDMDGLD 91
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ MF+T A A ++KPF + +++ +RL+
Sbjct: 92 VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQR 148
>gi|229587824|ref|YP_002869943.1| osmolarity response regulator [Pseudomonas fluorescens SBW25]
gi|229359690|emb|CAY46538.1| DNA-binding response regulator [Pseudomonas fluorescens SBW25]
Length = 246
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|225631178|ref|ZP_03787881.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591126|gb|EEH12305.1| response regulator PleD [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 460
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D + L L Y V ++G A D V ++ ++L DI+MP+M+
Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVSVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + L + ++ +T L+KP + L + L
Sbjct: 61 GFQVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSARIKSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 70.5 bits (173), Expect = 7e-11, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ++D + L + + ++ A E + L+++D+ + DG+ L
Sbjct: 159 ILVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ + L+ P +L+ VN + K
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKRK 277
>gi|182418450|ref|ZP_02949744.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
butyricum 5521]
gi|237666633|ref|ZP_04526618.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182377832|gb|EDT75376.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
butyricum 5521]
gi|237657832|gb|EEP55387.1| KDP operon transcriptional regulatory protein KdpE [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 239
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ +IL+ EDD +R + L Y+ +GA A + +++ D+ +P++
Sbjct: 1 MNKAQILVVEDDKAIRNLITTTLETKDYKFHIAEDGAKAILEAISYKPDVIILDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ + ++ ++ ++ + + ++ L+KPF + +L+ + L
Sbjct: 61 DGVEIISKIR-TWSNVPIIVVSARSDDSDKIEALDNGADDYLTKPFSVDELLARLRVALR 119
Query: 120 IKN 122
N
Sbjct: 120 RVN 122
>gi|325124170|gb|ADY83693.1| DNA-binding response regulator CreB [Acinetobacter calcoaceticus
PHEA-2]
Length = 240
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ K IL ED+ + L AL + G+ V N G A + E+ F ++ DI +P++
Sbjct: 2 MSPKQILCIEDEAAIVLPLRYALEREGWNVSWANTGTQALQYLSEQAFDFIILDIGLPDL 61
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ ++ + ++F+T +KPF R++V + +
Sbjct: 62 NGFEVCKQLRQK-SQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|325295161|ref|YP_004281675.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
gi|325065609|gb|ADY73616.1| two component transcriptional regulator, winged helix family
[Desulfurobacterium thermolithotrophum DSM 11699]
Length = 217
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+I + EDD + L + L K G+ V + G + +++ E + L++ D+++P M+G
Sbjct: 3 RIAVVEDDISIGNLLKRILSKEGFYVKVYSTGEALINELFEYGKEYDLIILDVMLPGMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E R E + ++ +T + ++KPF +++L+ + LL K
Sbjct: 63 VETCRFLRERKVKVPILMLTALSEEDDKVIGLDSGADDYVTKPFGVKELLARIRALLRRK 122
>gi|294673053|ref|YP_003573669.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
ruminicola 23]
gi|294472787|gb|ADE82176.1| sensor histidine kinase/DNA-binding response regulator [Prevotella
ruminicola 23]
Length = 1314
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D +DMR+FL Y +++ +G A +++ S++++D +MP MDG E
Sbjct: 1066 LIVDDSEDMRQFLENNFKDK-YHIITAGDGIEALHLLQQHQVSIIISDWMMPRMDGAEFC 1124
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + L + + +T + KPF ++ L + +L I+
Sbjct: 1125 RRVRQNPLTSHIPFVMLTAKTDDNSKVKGMDVGADAYIEKPFSVQYLEACIRNILQIR 1182
>gi|291451644|ref|ZP_06591034.1| two-component system response regulator [Streptomyces albus J1074]
gi|291354593|gb|EFE81495.1| two-component system response regulator [Streptomyces albus J1074]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|219856745|ref|YP_002473867.1| hypothetical protein CKR_3402 [Clostridium kluyveri NBRC 12016]
gi|219570469|dbj|BAH08453.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 233
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + +++ + C +GA +++ + L+L D++MP MD
Sbjct: 3 MSYKILVIDDDKELCALIRQSVAVESIDADHCYSGADGLAMLQKNDYQLILLDVMMPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ +T L+KPF + +L+ V L+
Sbjct: 63 GFQTMEKIRQ-TSSVPILMLTSKNDSTSKVRGLRSGADDYLTKPFDMDELIARVVSLIRR 121
>gi|89891885|ref|ZP_01203385.1| response regulator [Flavobacteria bacterium BBFL7]
gi|89515738|gb|EAS18540.1| response regulator [Flavobacteria bacterium BBFL7]
Length = 387
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
ILL ED+ +RR L K L + Y V +G + +++E + L+L DI MP+MDG+
Sbjct: 4 ILLIEDEAAIRRVLSKILSEENKNYTVTEAVDGLEGIEYIKKEDYDLVLCDIKMPKMDGV 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ ++ P++ V+ I+G + ++ +SKP L L+N V L K+
Sbjct: 64 EVLEAMKKIKPEIPVVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNALDRKS 123
>gi|88703693|ref|ZP_01101409.1| Response regulator receiver domain [Congregibacter litoralis KT71]
gi|88702407|gb|EAQ99510.1| Response regulator receiver domain [Congregibacter litoralis KT71]
Length = 258
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+D+ R ++ L +++ C+ G A + L++ D+ +P M G++
Sbjct: 23 RILVVEDDEDIARLIVMHLEDLNADLLHCDQGDKALQLALSNAWDLIVLDLRLPGMGGLD 82
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T ++ LSKPF +L LL
Sbjct: 83 ICRQLRERGNITPILMLTAKSSELDRVLGLELGADDYLSKPFSPLELTARAKALLRR 139
>gi|116749367|ref|YP_846054.1| two component sigma54 specific Fis family transcriptional regulator
[Syntrophobacter fumaroxidans MPOB]
gi|116698431|gb|ABK17619.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Syntrophobacter fumaroxidans MPOB]
Length = 476
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ + + L L GY + +G A +++R + L+L DI MP MD
Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + + L V+ I+G + + + KP L ++ + L
Sbjct: 61 GLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNAL 118
>gi|284053035|ref|ZP_06383245.1| two-component response regulator [Arthrospira platensis str.
Paraca]
gi|291566312|dbj|BAI88584.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 628
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L+ L Y+V N+G ++ ++ + L+L DI +P +DGI
Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDVVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + KP + +L + LL +
Sbjct: 62 LCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120
Score = 121 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++++ +DD M + L G + ++ + + + LL+ DI MP ++G
Sbjct: 495 NTRVMIVDDDPQMLAAIQTLLQPWGIQTITLGDPRQFWKTLESSHPDLLVLDIEMPHLNG 554
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL + + V+F+T + L+KPF +L + L
Sbjct: 555 IELCQIVRNDPRWRGIPVIFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614
Query: 120 I 120
Sbjct: 615 R 615
Score = 40.9 bits (96), Expect = 0.057, Method: Composition-based stats.
Identities = 7/57 (12%), Positives = 20/57 (35%)
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L T+ +P + + T ++ + + L KP + + + +
Sbjct: 433 QLLVDLTQQNPPIPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVIRDVFR 489
>gi|237797233|ref|ZP_04585694.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. oryzae str. 1_6]
gi|331020083|gb|EGI00140.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. oryzae str. 1_6]
Length = 222
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|218133615|ref|ZP_03462419.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
43243]
gi|217990990|gb|EEC56996.1| hypothetical protein BACPEC_01484 [Bacteroides pectinophilus ATCC
43243]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE 58
M++ KIL+ +D+ MR+ + L + Y+V+ NG A D ++ +L++ D++MP+
Sbjct: 5 MDKMKILVVDDESRMRKLVHDFLARNNYDVIEAANGEEALDIFYEDKDIALIILDVMMPK 64
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG E+ + + ++ +T + +SKPF + L V+ ++
Sbjct: 65 MDGWEVCAEIR-RNSKVPIIMLTAKGEERDELQGFELGVDEYISKPFSPKILTARVDAII 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|254432170|ref|ZP_05045873.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
gi|197626623|gb|EDY39182.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
Length = 240
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+D+ +RR L+ L AGY V+ +G A +E L++ D+++P++DG + RR
Sbjct: 2 DDEAAVRRVLLMRLQLAGYRVICAEDGEEALTLFHQEQPDLVVLDVMLPKLDGFAVCRRL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++F++ A+A L KPF ++L + +L
Sbjct: 62 RAE-SCVPIIFLSALDAIAERVSGLDLGADDYLPKPFSPKELEARIATILRR 112
>gi|170078637|ref|YP_001735275.1| two-component response regulator [Synechococcus sp. PCC 7002]
gi|169886306|gb|ACB00020.1| two-component response regulator [Synechococcus sp. PCC 7002]
Length = 219
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +DD +++ L L +AGY V +G D E L+++D+ MPEMDG
Sbjct: 2 KRILVIDDDPILQKILENLLTQAGYLVAVVLSGKQGLDIWLEFQPDLIVSDVRMPEMDGF 61
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R + +F++ V + + ++KPF +++L+ ++ R L
Sbjct: 62 EFCRYIRSQPTGQLIPFLFLSSQTDVEARVEGHFSGADDYIAKPFEMKELLAKIERQLAR 121
>gi|99035891|ref|ZP_01314942.1| hypothetical protein Wendoof_01000220 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 460
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D + L L Y V+ ++G A D V ++ ++L DI+MP+M+
Sbjct: 1 MTAKILVVDDVLSNVKLLEARLKAEYYTVIVAHDGEEAIDLVAKQQPDIILLDIMMPKMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ + L + ++ +T L+KP + L + + L
Sbjct: 61 GFEVCKELKSDPLTTHIPIIMVTALHDTHDRVQGINAGADDFLTKPINETALSSRIKSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.4 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ++D + L + + ++ A E + L+++D+ + DG+ L
Sbjct: 159 VLVIDEDVHQAEQIYNILKQRFRSIKILSDPMEALKVGIENGYDLIISDMQFSKTDGLRL 218
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ + L+ P +L+ VN + K
Sbjct: 219 CSEFRSKVETRYTPILILSEDYDKNNLVKALDVGANDYLTVPLDEGELIARVNSQVKRK 277
>gi|70728985|ref|YP_258719.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68343284|gb|AAY90890.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 225
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +DD ++ L L + G+ V +C++G SA + E S ++ D+++P+ G+EL
Sbjct: 5 LLIDDDQELCELLSSWLSQEGFLVRACHDGLSARRALAETAPSAVVLDVMLPDGSGLELL 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ PDL V+ ++ L+KP R+L + +L +
Sbjct: 65 KQLRNEHPDLPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRSH 121
>gi|83592721|ref|YP_426473.1| acetoacetate metabolism regulatory protein AtoC [Rhodospirillum
rubrum ATCC 11170]
gi|83575635|gb|ABC22186.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhodospirillum rubrum ATCC 11170]
Length = 460
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 62/120 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ +DD+ +R+ L L K G VV+ +G A + R + ++L DI MP M+G+
Sbjct: 6 QTVLIVDDDEAIRQMLSAFLSKEGLRVVTARDGLEAIEVFRLQRTDVVLLDIRMPRMNGL 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E A+ E+D V+ +T FA V + + KPF L ++ V R L I++
Sbjct: 66 EAAKAILEMDRGTAVILMTAFAEVCTAVQAIKDGAFDYVIKPFDLEEIRLLVRRALEIRS 125
>gi|24379372|ref|NP_721327.1| putative response regulator [Streptococcus mutans UA159]
gi|290580626|ref|YP_003485018.1| putative response regulator [Streptococcus mutans NN2025]
gi|24377300|gb|AAN58633.1|AE014933_7 putative response regulator [Streptococcus mutans UA159]
gi|254997525|dbj|BAH88126.1| putative response regulator [Streptococcus mutans NN2025]
Length = 228
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILLAED++ + R AL GY+V NG A +K E + + + DI+MP
Sbjct: 1 MSLTILLAEDEEQLSRVYTAALKHQGYQVDQVYNGQDAIEKAHENAYDVFILDIMMPIKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R + +T + + L+KP L++L+ + L
Sbjct: 61 GLEALREIRASGDHTHAIMLTAMSEIEDKVTGLEAGADDYLTKPISLKELLARLAS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|17986776|ref|NP_539410.1| transcriptional regulatory protein OMPR [Brucella melitensis bv. 1
str. 16M]
gi|23502389|ref|NP_698516.1| transcriptional regulatory protein OmpR [Brucella suis 1330]
gi|62290408|ref|YP_222201.1| OmpR transcriptional regulator [Brucella abortus bv. 1 str. 9-941]
gi|82700330|ref|YP_414904.1| response regulator receiver [Brucella melitensis biovar Abortus
2308]
gi|148559596|ref|YP_001259399.1| putative transcriptional regulatory protein OmpR [Brucella ovis
ATCC 25840]
gi|161619466|ref|YP_001593353.1| protein petR [Brucella canis ATCC 23365]
gi|163843775|ref|YP_001628179.1| protein petR [Brucella suis ATCC 23445]
gi|225627963|ref|ZP_03785999.1| Protein petR [Brucella ceti str. Cudo]
gi|225852998|ref|YP_002733231.1| protein PetR [Brucella melitensis ATCC 23457]
gi|237815913|ref|ZP_04594910.1| Protein petR [Brucella abortus str. 2308 A]
gi|254694197|ref|ZP_05156025.1| Protein petR [Brucella abortus bv. 3 str. Tulya]
gi|254697850|ref|ZP_05159678.1| Protein petR [Brucella abortus bv. 2 str. 86/8/59]
gi|254702239|ref|ZP_05164067.1| Protein petR [Brucella suis bv. 5 str. 513]
gi|254704774|ref|ZP_05166602.1| Protein petR [Brucella suis bv. 3 str. 686]
gi|254708188|ref|ZP_05170016.1| Protein petR [Brucella pinnipedialis M163/99/10]
gi|254710558|ref|ZP_05172369.1| Protein petR [Brucella pinnipedialis B2/94]
gi|254714741|ref|ZP_05176552.1| Protein petR [Brucella ceti M644/93/1]
gi|254717801|ref|ZP_05179612.1| Protein petR [Brucella ceti M13/05/1]
gi|254730741|ref|ZP_05189319.1| Protein petR [Brucella abortus bv. 4 str. 292]
gi|256032052|ref|ZP_05445666.1| Protein petR [Brucella pinnipedialis M292/94/1]
gi|256045144|ref|ZP_05448043.1| Protein petR [Brucella melitensis bv. 1 str. Rev.1]
gi|256061575|ref|ZP_05451716.1| Protein petR [Brucella neotomae 5K33]
gi|256114079|ref|ZP_05454849.1| Protein petR [Brucella melitensis bv. 3 str. Ether]
gi|256160248|ref|ZP_05457942.1| Protein petR [Brucella ceti M490/95/1]
gi|256255454|ref|ZP_05460990.1| Protein petR [Brucella ceti B1/94]
gi|256263520|ref|ZP_05466052.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|256369937|ref|YP_003107448.1| two-components response regulator, OmpR family [Brucella microti
CCM 4915]
gi|260169187|ref|ZP_05755998.1| two-components response regulator, OmpR family protein [Brucella
sp. F5/99]
gi|260546944|ref|ZP_05822683.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260565260|ref|ZP_05835744.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260565984|ref|ZP_05836454.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260758460|ref|ZP_05870808.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260762285|ref|ZP_05874628.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|261214502|ref|ZP_05928783.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|261219648|ref|ZP_05933929.1| two component transcriptional regulator [Brucella ceti M13/05/1]
gi|261222659|ref|ZP_05936940.1| two component transcriptional regulator [Brucella ceti B1/94]
gi|261315692|ref|ZP_05954889.1| two component transcriptional regulator [Brucella pinnipedialis
M163/99/10]
gi|261318130|ref|ZP_05957327.1| two component transcriptional regulator [Brucella pinnipedialis
B2/94]
gi|261322536|ref|ZP_05961733.1| two component transcriptional regulator [Brucella ceti M644/93/1]
gi|261325581|ref|ZP_05964778.1| two component transcriptional regulator [Brucella neotomae 5K33]
gi|261752810|ref|ZP_05996519.1| two component transcriptional regulator [Brucella suis bv. 5 str.
513]
gi|261755469|ref|ZP_05999178.1| two component transcriptional regulator [Brucella suis bv. 3 str.
686]
gi|261758700|ref|ZP_06002409.1| transcriptional regulatory protein [Brucella sp. F5/99]
gi|265989161|ref|ZP_06101718.1| two component transcriptional regulator [Brucella pinnipedialis
M292/94/1]
gi|265991576|ref|ZP_06104133.1| two component transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|265995412|ref|ZP_06107969.1| two component transcriptional regulator [Brucella melitensis bv. 3
str. Ether]
gi|265998623|ref|ZP_06111180.1| two component transcriptional regulator [Brucella ceti M490/95/1]
gi|306843132|ref|ZP_07475753.1| Protein petR [Brucella sp. BO2]
gi|17982405|gb|AAL51674.1| transcriptional regulatory protein ompr [Brucella melitensis bv. 1
str. 16M]
gi|23348373|gb|AAN30431.1| transcriptional regulatory protein OmpR, putative [Brucella suis
1330]
gi|62196540|gb|AAX74840.1| hypothetical transcriptional regulatory protein OmpR [Brucella
abortus bv. 1 str. 9-941]
gi|82616431|emb|CAJ11494.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal [Brucella melitensis biovar Abortus 2308]
gi|148370853|gb|ABQ60832.1| putative transcriptional regulatory protein OmpR [Brucella ovis
ATCC 25840]
gi|161336277|gb|ABX62582.1| Protein petR [Brucella canis ATCC 23365]
gi|163674498|gb|ABY38609.1| Protein petR [Brucella suis ATCC 23445]
gi|225617126|gb|EEH14172.1| Protein petR [Brucella ceti str. Cudo]
gi|225641363|gb|ACO01277.1| Protein petR [Brucella melitensis ATCC 23457]
gi|237789211|gb|EEP63422.1| Protein petR [Brucella abortus str. 2308 A]
gi|256000100|gb|ACU48499.1| two-components response regulator, OmpR family [Brucella microti
CCM 4915]
gi|260095994|gb|EEW79871.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260151328|gb|EEW86422.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260155502|gb|EEW90582.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260668778|gb|EEX55718.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260672717|gb|EEX59538.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260916109|gb|EEX82970.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|260921243|gb|EEX87896.1| two component transcriptional regulator [Brucella ceti B1/94]
gi|260924737|gb|EEX91305.1| two component transcriptional regulator [Brucella ceti M13/05/1]
gi|261295226|gb|EEX98722.1| two component transcriptional regulator [Brucella ceti M644/93/1]
gi|261297353|gb|EEY00850.1| two component transcriptional regulator [Brucella pinnipedialis
B2/94]
gi|261301561|gb|EEY05058.1| two component transcriptional regulator [Brucella neotomae 5K33]
gi|261304718|gb|EEY08215.1| two component transcriptional regulator [Brucella pinnipedialis
M163/99/10]
gi|261738684|gb|EEY26680.1| transcriptional regulatory protein [Brucella sp. F5/99]
gi|261742563|gb|EEY30489.1| two component transcriptional regulator [Brucella suis bv. 5 str.
513]
gi|261745222|gb|EEY33148.1| two component transcriptional regulator [Brucella suis bv. 3 str.
686]
gi|262553247|gb|EEZ09081.1| two component transcriptional regulator [Brucella ceti M490/95/1]
gi|262766525|gb|EEZ12314.1| two component transcriptional regulator [Brucella melitensis bv. 3
str. Ether]
gi|263002360|gb|EEZ14935.1| two component transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|263093550|gb|EEZ17575.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|264661358|gb|EEZ31619.1| two component transcriptional regulator [Brucella pinnipedialis
M292/94/1]
gi|306286682|gb|EFM58238.1| Protein petR [Brucella sp. BO2]
gi|326409538|gb|ADZ66603.1| protein PetR [Brucella melitensis M28]
gi|326539246|gb|ADZ87461.1| protein petR [Brucella melitensis M5-90]
Length = 241
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+
Sbjct: 21 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 81 LTRSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 136
>gi|134298499|ref|YP_001111995.1| two component transcriptional regulator [Desulfotomaculum reducens
MI-1]
gi|134051199|gb|ABO49170.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum reducens MI-1]
Length = 232
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+A+DD + + + +L + GY V++ +G A +++ DI+MP++DG
Sbjct: 3 NGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E +++ + D+ ++ ++ V +KPF +L V +L
Sbjct: 63 LEASQKIK-MKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120
>gi|74314832|ref|YP_313251.1| DNA-binding response regulator CreB [Shigella sonnei Ss046]
gi|193065660|ref|ZP_03046726.1| transcriptional regulatory protein CreB [Escherichia coli E22]
gi|218556934|ref|YP_002389848.1| DNA-binding response regulator CreB [Escherichia coli IAI1]
gi|256020158|ref|ZP_05434023.1| DNA-binding response regulator CreB [Shigella sp. D9]
gi|260847288|ref|YP_003225066.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O103:H2 str. 12009]
gi|300905390|ref|ZP_07123159.1| response regulator receiver domain protein [Escherichia coli MS
84-1]
gi|300923534|ref|ZP_07139569.1| response regulator receiver domain protein [Escherichia coli MS
182-1]
gi|301303503|ref|ZP_07209626.1| response regulator receiver domain protein [Escherichia coli MS
124-1]
gi|332281320|ref|ZP_08393733.1| catabolic regulation response regulator [Shigella sp. D9]
gi|73858309|gb|AAZ91016.1| catabolic regulation response regulator [Shigella sonnei Ss046]
gi|192926733|gb|EDV81361.1| transcriptional regulatory protein CreB [Escherichia coli E22]
gi|218363703|emb|CAR01363.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli IAI1]
gi|257762435|dbj|BAI33932.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O103:H2 str. 12009]
gi|300402759|gb|EFJ86297.1| response regulator receiver domain protein [Escherichia coli MS
84-1]
gi|300420208|gb|EFK03519.1| response regulator receiver domain protein [Escherichia coli MS
182-1]
gi|300841230|gb|EFK68990.1| response regulator receiver domain protein [Escherichia coli MS
124-1]
gi|315255739|gb|EFU35707.1| response regulator receiver domain protein [Escherichia coli MS
85-1]
gi|320200483|gb|EFW75069.1| Two-component response regulator CreB [Escherichia coli EC4100B]
gi|323166208|gb|EFZ51986.1| transcriptional regulatory protein creB [Shigella sonnei 53G]
gi|323181940|gb|EFZ67352.1| transcriptional regulatory protein creB [Escherichia coli 1357]
gi|324019813|gb|EGB89032.1| response regulator receiver domain protein [Escherichia coli MS
117-3]
gi|332103672|gb|EGJ07018.1| catabolic regulation response regulator [Shigella sp. D9]
Length = 229
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|227541629|ref|ZP_03971678.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
gi|227182597|gb|EEI63569.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866]
Length = 227
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + L L K G++ + +G +A + + L+L D+++P M G +
Sbjct: 3 TVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ + V+ +T ++KP+ R+L+ + +L
Sbjct: 63 VCRRLRQV-STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|229817860|ref|ZP_04448142.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
20098]
gi|229784760|gb|EEP20874.1| hypothetical protein BIFANG_03146 [Bifidobacterium angulatum DSM
20098]
Length = 242
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ +GASA + L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWSARVAGDGASAVQAAAQLRPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A ++KPF +R+L+ LL
Sbjct: 73 EATKRIVADRP-VPVLILTARDDEADKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|167033014|ref|YP_001668245.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166859502|gb|ABY97909.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 246
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTSIVADGRQMRAFLEANSVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRAGKHRNTPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|1408184|gb|AAB03659.1| two component response regulator [Mycobacterium tuberculosis str.
Erdman]
Length = 234
Score = 142 bits (361), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ M L +AL + G+ V + +G V + ++ D+++P +DG E
Sbjct: 5 HILVVEDEPKMTALLARALTEEGHTVDTVADGRHTVASVDGGDYDAVVLDVMLPGIDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R V+ +T A L+KPF+L +L + L+ +
Sbjct: 65 VCARLRRQRVWTPVLMLTARGAFTDRIAGLDGGADDYLTKPFNLDELFARLRA-LSRR 121
>gi|312958365|ref|ZP_07772886.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311287429|gb|EFQ65989.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 246
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 TACKRLRGANNQTPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|306819943|ref|ZP_07453594.1| DNA-binding response regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551979|gb|EFM39919.1| DNA-binding response regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ ++ L+ L ++ Y V +G A + E + ++ DI++P++DGIE
Sbjct: 2 RILLVEDERELSNALVAILTRSNYSVDPVYDGEDALYYLETENYDAVILDIMIPKIDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+ +T + + L+KPF ++L+ + L
Sbjct: 62 VLKTIRKEGNKIPVIMLTAKSEIDDRVVGLDSGADDYLTKPFASKELLARLRALTRR 118
>gi|302519444|ref|ZP_07271786.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302428339|gb|EFL00155.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G K+REE L++ D+++P +DG E+
Sbjct: 11 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 71 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124
>gi|300932843|ref|ZP_07148099.1| two-component system response regulator MtrA [Corynebacterium
resistens DSM 45100]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+E V +G A + R L+L D+++P M+
Sbjct: 1 MAPKILVVDDDPAIAEMLTIVLQGEGFETVVVGDGNEAVNAARNHNPDLILLDVMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R E D + ++ +T + KPF ++
Sbjct: 61 GVDVCRAIRE-DSTVPIVMLTARTDTVDVGLGLESGADDYVHKPFKPKE 108
>gi|253689068|ref|YP_003018258.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755646|gb|ACT13722.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD D L L + GY+V ++G L+L D+++P+M+G
Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQKGLHMALTSKPDLILLDVMLPKMNGS 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ V+ +T + + KP++ +++V V +L
Sbjct: 64 EVLSALRQR-SNIPVIMVTAIGDEPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120
>gi|256823584|ref|YP_003147547.1| winged helix family two component transcriptional regulator
[Kangiella koreensis DSM 16069]
gi|256797123|gb|ACV27779.1| two component transcriptional regulator, winged helix family
[Kangiella koreensis DSM 16069]
Length = 227
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL ED ++ + L GY V +G S + + + L+ D+++P MD
Sbjct: 1 MAYSILLVEDHKELAATTGEYLEACGYIVDYAMDGISGLNLAKNNQYDALILDVMLPGMD 60
Query: 61 GIELARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + +R E D+ ++ +T ++ D L KPF +L +N ++
Sbjct: 61 GFTICQRIRQEAQSDIPILMLTARDQLSDKLDGFDAGADDYLIKPFDFEELDARLNAIIR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|225024963|ref|ZP_03714155.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
23834]
gi|224942294|gb|EEG23503.1| hypothetical protein EIKCOROL_01852 [Eikenella corrodens ATCC
23834]
Length = 221
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + +L +GY V NNG +A + + L+L D+ +P DG++
Sbjct: 2 RILLIEDDTMIADAVAGSLKDSGYAVDWINNGRTAVTAFGSQSYDLILLDLGLPGQDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + L KPF + +L + +L ++
Sbjct: 62 VLQQLRGSGNTTPVLILTARDDLHSRLSGLDGGADDYLIKPFDMAELQARIRAVLRRQH 120
>gi|261409756|ref|YP_003245997.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261286219|gb|ACX68190.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62
+L+ +DD ++ + L GY V+ ++G A + L++ D++MP+++GI
Sbjct: 4 VLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + + ++ ++ + + KPF+ +L V LL
Sbjct: 64 DTCRRIRE-NSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRR 120
>gi|197119775|ref|YP_002140202.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197089135|gb|ACH40406.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 453
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GY+V + +G + E ++++TD+ MP
Sbjct: 1 MPAKILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFAERLPAVVITDLKMPGKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ E P V+ +T F A+ ++ L+KPF+ +L V + L +
Sbjct: 61 GFEVLSAIKESSPATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|116251496|ref|YP_767334.1| response regulator PleD [Rhizobium leguminosarum bv. viciae 3841]
gi|115256144|emb|CAK07225.1| putative two-component response regulator with GGDEF sensory box
protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 457
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L ++V++ +G +A L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLLAEYFDVMTAADGYTALAICERNQVDLILLDIMMPGID 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + + V+ +T L+KP + L++ V LL
Sbjct: 61 GFEVCERLKASQKTAHIPVVMVTALDQPTDRVRGLKAGADDFLTKPVNDLQLISRVKSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 68.2 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + + +IKAL +V++ ++ +A + E F L++ + + D + L
Sbjct: 158 VLLVDGRANSQERIIKALKPV-ADVLALSDPQAALFEAAESAFDLVIVNANFDDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ IT A + + + +P +LV + K
Sbjct: 217 CSQLRSLERTRFLPILIITEQGADEMVVRALDLGVNDYIIRPVDPNELVARSLTQIRRK 275
>gi|56551153|ref|YP_161992.1| winged helix family two component transcriptional regulator
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241761507|ref|ZP_04759595.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|260753198|ref|YP_003226091.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|56542727|gb|AAV88881.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241374414|gb|EER63911.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|258552561|gb|ACV75507.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + R L L AGY V +G + E + ++ D+ +PE+DG+
Sbjct: 2 RVLIVEDEPTLSRQLRTTLEGAGYAVDLATDGEDGHFLGSSENYDAVVLDLGLPEVDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ V+ +T + + L+KPF +L+ + L+
Sbjct: 62 VLDRWRKEGREMPVLVLTARDSWSDKVAGLDAGADDYLTKPFQTEELIARLRALIRR 118
>gi|330468337|ref|YP_004406080.1| winged helix family two component transcriptional regulator
[Verrucosispora maris AB-18-032]
gi|328811308|gb|AEB45480.1| two component transcriptional regulator, winged helix family
protein [Verrucosispora maris AB-18-032]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ +D+ + R L L GY+V G A P L++ D+ +P++D
Sbjct: 1 MN-RILVVDDEPQILRALGINLRARGYDVQVAATGTDALKAAARHPPDLVVLDLGLPDLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++G A + ++KPF + +L+ + + T
Sbjct: 60 GVEVIRGLRG-WTGVPIIVLSGRAGSDDKVTALDAGADDYVTKPFGVDELLARIRAV-TR 117
Query: 121 KN 122
++
Sbjct: 118 RH 119
>gi|307329401|ref|ZP_07608563.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306884935|gb|EFN15959.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+ V NG A +R +++++ D+++P +G ++
Sbjct: 3 VLVVEDEQNIALAVDRGLRAEGFGVDIAENGEKALGLIRHNDYAVIVLDLMLPGRNGYDV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R V+ +T D+ L+KPF L+ + LL
Sbjct: 63 CRTLRAAGIATPVLILTAKDGEYDEADALDLGADDYLTKPFSFVVLLARIRALLRR 118
>gi|300854363|ref|YP_003779347.1| two-component response regulator [Clostridium ljungdahlii DSM
13528]
gi|300434478|gb|ADK14245.1| two-component response regulator [Clostridium ljungdahlii DSM
13528]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++R + L GY+V+ ++G A + L++ DI+MP+MDGIE+
Sbjct: 6 VLVVDDEKEIRDLVEIYLVNEGYKVLKASDGLEALQISNDNEVDLVILDIMMPKMDGIEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ ++ ++ + + KPF+ +LV V L
Sbjct: 66 CMRMRK-SKNMPIIMLSAKSQDLDKILGLTTGADDYVVKPFNPLELVARVKSQLRR 120
>gi|224536541|ref|ZP_03677080.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
14838]
gi|224521797|gb|EEF90902.1| hypothetical protein BACCELL_01416 [Bacteroides cellulosilyticus DSM
14838]
Length = 1493
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L K Y ++ NG E ++++D++MP MDG+E+
Sbjct: 1228 ILIVEDNRELRSLLRNILSKK-YTILEAANGEEGLKLASEAIPDMIISDVMMPVMDGLEM 1286
Query: 65 ARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R E + D+ ++ ++ A++ + ++KPF L + L T +
Sbjct: 1287 IKRIKE-NKDICYVPIILLSAKASLDDRITALEQGIDDYITKPFSSSYLKARIASLFTKR 1345
>gi|37527064|ref|NP_930408.1| two-component response regulator [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36786497|emb|CAE15553.1| Two-component response regulator [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL +G+ V ++G A ++ E ++LL+ D+ +P +DG+
Sbjct: 2 RLLLVEDHPELLHWLQKALSSSGFAVDVASDGIVADQLLQTENYALLILDVSLPRLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T V+ L+KPF L++L + LL
Sbjct: 62 LLVRLRKRGQNLPVLLLTAKTDVSERVKGLNSGADDYLTKPFDLQELEARIRALLRR 118
>gi|152964864|ref|YP_001360648.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
gi|151359381|gb|ABS02384.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
Length = 226
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ L L + GY+V G A ++ + L+L D+++P +
Sbjct: 1 MT-RILVVEDEESFSDPLSYLLRREGYDVAVTETGPEALEEFDKAGADLVLLDLMLPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + V+ +T + ++KP+ R+L+ V +L
Sbjct: 60 GTEVCRQLR-TRSSVPVIMLTAKDSEIDKVVGLEIGADDYVTKPYSSRELLARVRAVLRR 118
>gi|329769101|ref|ZP_08260522.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
gi|328839447|gb|EGF89024.1| hypothetical protein HMPREF0433_00286 [Gemella sanguinis M325]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ D+ L L Y V + +NG A D + + + + D++MP+MDG+
Sbjct: 2 RILLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E V+ +T + + L+KPF +++L+ V + +
Sbjct: 62 VVQKLRENKKSTPVLLLTAKSEIEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119
>gi|315919193|ref|ZP_07915433.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313693068|gb|EFS29903.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1409
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ +G A + P +++D++MP MDG+E
Sbjct: 1157 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPVDFIISDLMMPVMDGVE 1215
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + + +T + +S + L KPF L+ + +L +
Sbjct: 1216 LSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENR 1275
>gi|295108877|emb|CBL22830.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++ + + + L GYE +C +G + E + L+L D+ +P DG++
Sbjct: 2 HILIIEDEEQLCCSIAEGLRMNGYETDTCFDGNEGLELCMTESYDLILLDLNLPGTDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D V+ ++ + + L+KPFH +L + L K
Sbjct: 62 ILQQFRTSDSTTPVLILSARGQIQDKVEGLDLGANDYLTKPFHFEELEARIRSLTRRK 119
>gi|291445797|ref|ZP_06585187.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291348744|gb|EFE75648.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEEFFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRSR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|289679223|ref|ZP_06500113.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae FF5]
Length = 222
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQHWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|260170861|ref|ZP_05757273.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one component system') [Bacteroides sp. D2]
Length = 1384
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ +G A + P +++D++MP MDG+E
Sbjct: 1132 TILVVEDNVDMRGYIRSILREQ-YNVLEAADGEEALHILNSNPVDFIISDLMMPVMDGVE 1190
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + + +T + +S + L KPF L+ + +L +
Sbjct: 1191 LSRRVKDTFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENR 1250
>gi|167834881|ref|ZP_02461764.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ ++I L G+ V S +G SA ++ + + LL D+ +P M G E
Sbjct: 2 KLLLVEDNAELAHWIIDLLRGEGFGVDSAPDGESADTVLKAQRYDALLLDMRLPGMSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R ++ V+ +T +V D + + KPF R+LV + L+ +
Sbjct: 62 LLARLRRRGDNVPVLMLTAHGSVDDKVDCFSAGADDYVVKPFESRELVARIRALIRRQ 119
>gi|158429258|pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED++ + L L K G+E +G +A + ++L D+++P M
Sbjct: 3 MATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 63 GTDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>gi|146306862|ref|YP_001187327.1| two component transcriptional regulator [Pseudomonas mendocina ymp]
gi|145575063|gb|ABP84595.1| two component transcriptional regulator, winged helix family
[Pseudomonas mendocina ymp]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +DD ++ L L + G++V +C+ +A + + ++ D+++P+
Sbjct: 1 MS-RLLLIDDDQELCELLSSWLTQEGFQVTACHEAGNARRALALQAPDAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ P+L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
>gi|325113029|ref|YP_004276975.1| two-component response regulator [Acidiphilium multivorum AIU301]
gi|325052496|dbj|BAJ82833.1| two-component response regulator [Acidiphilium multivorum AIU301]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 46/117 (39%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L K L + G+ +G + R + ++ DI++P DG E
Sbjct: 2 RVLIVEDEAKTAAYLRKGLEENGFTTDVATDGETGLQFARHGGYDAIILDIMLPRRDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ +T V L KPF +L+ V +L
Sbjct: 62 ILAEIRRRDSHTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRR 118
>gi|326404574|ref|YP_004284656.1| putative two-component response regulator [Acidiphilium multivorum
AIU301]
gi|325051436|dbj|BAJ81774.1| putative two-component response regulator [Acidiphilium multivorum
AIU301]
Length = 239
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L + + V + + A + L++ D+++P GI+
Sbjct: 6 HILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGID 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR + ++ +T ++KPF+ R+LV + +L
Sbjct: 66 FARWLRGE-SQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRR 121
>gi|320156983|ref|YP_004189362.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
gi|319932295|gb|ADV87159.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
Length = 242
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
+IL+ +DD ++R L + L + GY+V + +G + E L+L DI++P DG
Sbjct: 6 RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ +T + ++KPF+ R LV + +L
Sbjct: 66 SLCQFMRRE-STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRR 122
>gi|317485000|ref|ZP_07943883.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316923738|gb|EFV44941.1| response regulator receiver domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 637
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ILL +D+ +R + +L AGY V++ +G A E P +++TDI MP M+
Sbjct: 1 MKETILLVDDEQGIRTVMGLSLRDAGYNVITVASGEEALQLFAERPIPIVITDIRMPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L + L P+ +V+ I+G A + + + + ++KP L + R L
Sbjct: 61 GLDLLKHIKILAPETEVILISGHADLEMAIQGLKLEASDFITKPIDDDLLHISLKRALER 120
>gi|293376013|ref|ZP_06622270.1| putative transcriptional regulatory protein CutR [Turicibacter
sanguinis PC909]
gi|325841065|ref|ZP_08167248.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
gi|292645369|gb|EFF63422.1| putative transcriptional regulatory protein CutR [Turicibacter
sanguinis PC909]
gi|325490082|gb|EGC92426.1| transcriptional regulatory protein CutR [Turicibacter sp. HGF1]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ L K L K GY V +G A + + ++L++ DI +P +DG
Sbjct: 2 RLLIIEDEKDILLALQKGLQKEGYAVDVTGDGEEALELLNFNTYNLVVLDINLPSIDGFS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D +V+ ++ + L KPF +L + LL +
Sbjct: 62 ILEILREKDMTTRVIIVSANREIEDKIRGLDLGANDYLVKPFDFSELKARIRALLRRE 119
>gi|302519462|ref|ZP_07271804.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302428357|gb|EFL00173.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 227
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD+ +RR + L + G+EV + +G +++ D ++P MDG+E
Sbjct: 3 RVLLIEDDEPVRRAVTLGLRRQGHEVRAAASGEEGLAAFAAAVPDVVVLDWMLPGMDGLE 62
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T + KP R L + +L
Sbjct: 63 VCRRLRTPERAHVPLLLVTARGDDIDVVVGLEAGADDYVVKPVRARVLDARIRAVLRR 120
>gi|291285833|ref|YP_003502651.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
CB9615]
gi|209748784|gb|ACI72699.1| catabolic regulation response regulator [Escherichia coli]
gi|290765706|gb|ADD59667.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
CB9615]
gi|320660297|gb|EFX27801.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
USDA 5905]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|281422568|ref|ZP_06253567.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella copri DSM 18205]
gi|281403392|gb|EFB34072.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella copri DSM 18205]
Length = 935
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D+R++ L Y V+ +G +E L++ D++MP MDG+E
Sbjct: 685 TVLVIDDNTDIRQYERTLLQDE-YIVLEAADGKEGLAVALKEVPDLVICDVMMPVMDGLE 743
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + ++KPFH + L+ + LL +
Sbjct: 744 LTEQLKTNTATSHIPVIMLTAKNLEEHRAEGYEHGADSYITKPFHSKVLLARIENLLRQR 803
>gi|255283546|ref|ZP_05348101.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bryantella formatexigens DSM 14469]
gi|255265808|gb|EET59013.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bryantella formatexigens DSM 14469]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ EDD ++ L + +AG+ VV +G A K E+ F L+L DI++P++D
Sbjct: 1 MS-KILIVEDDISIQALLHDFIQEAGHSVVLAADGVEALAKYSEQTFDLVLLDIMLPKID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + ++ ++ +T + ++KPF + L+ ++ +L
Sbjct: 60 GYGVCEVIRQK-SNVPIIMLTALDNEENQIKGLDLQADDYITKPFSMPVLLRKIAAVLRR 118
Query: 121 KN 122
+
Sbjct: 119 SS 120
>gi|298292432|ref|YP_003694371.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296928943|gb|ADH89752.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 248
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + GY V + + A A ++ F LL+ D++MP G E
Sbjct: 27 HLLIVDDDRRIRDLLSRFLTEHGYRVTTAESAADARARLAGLTFDLLILDVMMPGESGFE 86
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR E + +M +T + + L+KPF R+L+ + ++
Sbjct: 87 LARAVRE-GSGVPIMMLTARSETGDRIEGLEIGADDYLAKPFEPRELLLRIGNIIKR 142
>gi|323341542|ref|ZP_08081780.1| response regulator [Lactobacillus ruminis ATCC 25644]
gi|323091026|gb|EFZ33660.1| response regulator [Lactobacillus ruminis ATCC 25644]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD D+ L + GYEV NG A K+ P L++ DI+MP+MDG+
Sbjct: 2 KILIVDDDKDIVELLSIYVKNEGYEVERAYNGKEAITKLNTNPDIGLMILDIMMPQMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D + V+ ++ ++KPF+ +++ V LL
Sbjct: 62 AVVREVRK-DSQIPVLMLSAKTDDLDKIQGLIQGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|169630331|ref|YP_001703980.1| transcriptional regulatory protein KdpE [Mycobacterium abscessus
ATCC 19977]
gi|169242298|emb|CAM63326.1| Probable transcriptional regulatory protein KdpE [Mycobacterium
abscessus]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + R + L GYEVV+ ++GA A E +++ D+ +P+MD
Sbjct: 1 MT-RVLVVDDEPQILRAMRINLSARGYEVVTASSGAGALRAAAETQPEVVILDLGLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ D+ V+ ++ A ++ ++KPF + + + + +
Sbjct: 60 GTEVLAGLRG-WTDVPVIVLSARTDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 118
>gi|168180732|ref|ZP_02615396.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226949683|ref|YP_002804774.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|182668403|gb|EDT80382.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226842646|gb|ACO85312.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 226
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKKR 119
>gi|44888876|gb|AAS48175.1| DNA-binding response regulator [Pseudomonas fluorescens]
Length = 246
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + L + GY + N + E F+L++ D+++P DG+
Sbjct: 11 EKILIVDDDPGLSSLLERFFNSKGYRARAVPNTEQMDRLLGREVFNLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + + ++ +T L+KPF+ +L+ V +L +
Sbjct: 71 TACKRLRGANNQIPIIMLTAKGDELSRIKGLELGADDYLAKPFNPDELMARVKAVLRRQ 129
>gi|325262401|ref|ZP_08129138.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
gi|324032233|gb|EGB93511.1| subtilin biosynthesis regulatory protein SpaR [Clostridium sp. D5]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++ + L YEV++ GA A+D++R E ++L DI MP +D
Sbjct: 1 MQYKILIVDDDTELLKMLRSYFEIKKYEVITACCGAEAFDRIRPE-PDIILLDINMPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+ + ++F+T + + KPF L++L + L
Sbjct: 60 GLDVCRQIRDK-VMCPIIFLTAKVEEQDRVNGLLSGGDDYILKPFSLKELEARITAHLKR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|319947435|ref|ZP_08021667.1| DNA-binding response regulator [Streptococcus australis ATCC
700641]
gi|319746375|gb|EFV98636.1| DNA-binding response regulator [Streptococcus australis ATCC
700641]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ D+ R ++K L Y V + +G A D +R + ++++DI+MP++DG+
Sbjct: 2 KVLVIEDEVDLNRSIVKLLKTQQYSVNAAYDGQEALDYIRVSQYDVIISDIMMPQLDGLG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ +T ++ L KPF +L+ + +L N
Sbjct: 62 VLSYLRNHQIKTPVLMLTAKDSLEDKVTGLDAGADDYLVKPFEFDELLARIRVMLRRNN 120
>gi|312143401|ref|YP_003994847.1| response regulator receiver protein [Halanaerobium sp.
'sapolanicus']
gi|311904052|gb|ADQ14493.1| response regulator receiver protein [Halanaerobium sp.
'sapolanicus']
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ ++R L KAL AGYEV + NG K++EE ++L D+ MP MD
Sbjct: 1 MKNKILIVDDEKNIRLTLKKALSNAGYEVETAVNGEDGLSKLKEEEIPVVLLDMKMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + K++ ITG+ +V ++ L KPF +++ V +
Sbjct: 61 GIQFLKEVKNEGIKTKIILITGYGSVETAVETLKLGAVDYLRKPFKPEEIIGIVEDVFER 120
>gi|295090647|emb|CBK76754.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 247
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++R+ + L GY V +G + +E L + DI+MP MDGI
Sbjct: 11 HILIVEDDREIRQGIEIFLRGQGYRVFQAADGIEGLRVLEKEEILLAIVDIMMPRMDGIT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E D V+F++ + ++KPF +L+ VN L
Sbjct: 71 MVIKLREQY-DFPVIFLSAKSEEVDKIMGLNMGADDYVTKPFTPMELLARVNSQLRR 126
>gi|290475966|ref|YP_003468861.1| response regulator in two-component regulatory system with QseC,
regulates flagella and motility by quorum sensing (OmpR
family) [Xenorhabdus bovienii SS-2004]
gi|289175294|emb|CBJ82097.1| response regulator in two-component regulatory system with QseC,
regulates flagella and motility by quorum sensing (OmpR
family) [Xenorhabdus bovienii SS-2004]
Length = 221
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED D+ +L KAL +G+ V +G +A + E ++LL+ D+ +P +DGI
Sbjct: 2 RLLLVEDHPDLSHWLQKALSSSGFAVDIAEDGIAADQLLLTEDYTLLILDVALPRLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T VA ++KPF +L + LL
Sbjct: 62 LLSRLRKRGQNLPVLLLTAKVDVADRVKGLNSGADDYVTKPFDFEELEARIRALLRR 118
>gi|261346186|ref|ZP_05973830.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
4541]
gi|282565842|gb|EFB71377.1| DNA-binding response regulator TctD [Providencia rustigianii DSM
4541]
Length = 222
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED +++ +L KAL +G+ V ++G A ++ E +SL++ D+ +P M+G+E
Sbjct: 2 RMLLVEDHEELSLWLQKALTASGFAVDIADDGYIADQLLQTEDYSLVVLDVSLPRMNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + V+ +T + V+ L+KPF + +L + LL +
Sbjct: 62 VLASMRKRQQETPVLLLTANSDVSDRVKGLNAGADDYLTKPFDIAELEARIRALLRRSH 120
>gi|218551702|ref|YP_002385494.1| DNA-binding response regulator CreB [Escherichia fergusonii ATCC
35469]
gi|218359244|emb|CAQ91910.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia fergusonii ATCC 35469]
gi|324112609|gb|EGC06586.1| response regulator receiver domain-containing protein [Escherichia
fergusonii B253]
gi|325495931|gb|EGC93790.1| DNA-binding response regulator CreB [Escherichia fergusonii ECD227]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++ L ED+ + LI L + G+ V + G A +K + + + D+ +P++ G E
Sbjct: 5 RVWLVEDEQGIADTLIYMLTQEGFLVEAFERGLPALEKAHFQVPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E P L ++F+T + ++KPF R++ V LL
Sbjct: 65 LCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|182420008|ref|ZP_02951242.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237669491|ref|ZP_04529471.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376045|gb|EDT73632.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237654935|gb|EEP52495.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 228
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD+++ + L G+ NG A + L+L D+++P++DGI+
Sbjct: 7 KVLIVDDDENICEVIDMYLKSVGFNTKIALNGKEAKMLYMDYNPDLVLLDMMIPQVDGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ IT + + KPF ++L+ V +L
Sbjct: 67 VLKWIRKQGER-PVIMITAKGDTFDKVLALELGADDYIVKPFEPKELLARVKAVLRR 122
>gi|53804897|ref|YP_113275.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
gi|53758658|gb|AAU92949.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
Length = 243
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD ++R L L + G E V ++GA+ + E F L++ D+++P DG+
Sbjct: 7 RILIVDDDVEIRNLLGGYLSRFGMEAVGVHDGAAMKKALTESSFDLVVLDLMLPGEDGLT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R D+ V+ +T ++KPF R+LV + +L
Sbjct: 67 LCRSLRGE-SDIPVIMLTARGDPMDRVVGLELGADDYVAKPFEPRELVARIQSILRR 122
>gi|16766096|ref|NP_461711.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|56414742|ref|YP_151817.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62181286|ref|YP_217703.1| tricarboxylic transport: regulatory protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161615674|ref|YP_001589639.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552720|ref|ZP_02346472.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167992501|ref|ZP_02573599.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168233741|ref|ZP_02658799.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168238695|ref|ZP_02663753.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244578|ref|ZP_02669510.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168262111|ref|ZP_02684084.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168464100|ref|ZP_02698017.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168822904|ref|ZP_02834904.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194444892|ref|YP_002042026.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194450259|ref|YP_002046745.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194472936|ref|ZP_03078920.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737394|ref|YP_002115739.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197266024|ref|ZP_03166098.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197363670|ref|YP_002143307.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|198242096|ref|YP_002216758.1| transcriptional regulator TctD [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|200386900|ref|ZP_03213512.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204929393|ref|ZP_03220467.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205353737|ref|YP_002227538.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207858053|ref|YP_002244704.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|238909555|ref|ZP_04653392.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|325530291|sp|E1WA34|TCTD_SALTS RecName: Full=Transcriptional regulatory protein tctD
gi|325530292|sp|P0CL17|TCTD_SALTY RecName: Full=Transcriptional regulatory protein tctD
gi|11128401|gb|AAG31204.1|AF020810_5 TctD [Salmonella enterica subsp. enterica serovar Typhimurium str.
SL1344]
gi|295218|gb|AAA27232.1| membrane associated regulatory protein [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16421333|gb|AAL21670.1| tricarboxylic transport regulatory protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|56128999|gb|AAV78505.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128919|gb|AAX66622.1| tricarboxylic transport: regulatory protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161365038|gb|ABX68806.1| hypothetical protein SPAB_03459 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403555|gb|ACF63777.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194408563|gb|ACF68782.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194459300|gb|EDX48139.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194712896|gb|ACF92117.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633172|gb|EDX51586.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095147|emb|CAR60696.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197244279|gb|EDY26899.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197288507|gb|EDY27884.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197936612|gb|ACH73945.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199603998|gb|EDZ02543.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321112|gb|EDZ06312.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273518|emb|CAR38501.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322727|gb|EDZ10566.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205329319|gb|EDZ16083.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205332210|gb|EDZ18974.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205336574|gb|EDZ23338.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205340766|gb|EDZ27530.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349080|gb|EDZ35711.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206709856|emb|CAR34209.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261247926|emb|CBG25759.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994894|gb|ACY89779.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301159349|emb|CBW18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913807|dbj|BAJ37781.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|320087188|emb|CBY96954.1| Response regulator mprA Mycobacterial persistence regulator A
[Salmonella enterica subsp. enterica serovar Weltevreden
str. 2007-60-3289-1]
gi|321223577|gb|EFX48642.1| Tricarboxylate transport transcriptional regulator TctD [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322614392|gb|EFY11323.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322621543|gb|EFY18396.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322624404|gb|EFY21237.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322626602|gb|EFY23407.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322633538|gb|EFY30280.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322638419|gb|EFY35117.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322639722|gb|EFY36406.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322643768|gb|EFY40318.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322649454|gb|EFY45888.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322655956|gb|EFY52256.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322661351|gb|EFY57576.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662549|gb|EFY58757.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666923|gb|EFY63098.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322671293|gb|EFY67416.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322677700|gb|EFY73763.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322681473|gb|EFY77503.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322683872|gb|EFY79882.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|322715771|gb|EFZ07342.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131137|gb|ADX18567.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323193739|gb|EFZ78942.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197473|gb|EFZ82610.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323203288|gb|EFZ88317.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323205234|gb|EFZ90209.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323212753|gb|EFZ97564.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323218105|gb|EGA02817.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323221632|gb|EGA06045.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
gi|323227156|gb|EGA11330.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323230868|gb|EGA14986.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323234781|gb|EGA18867.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238820|gb|EGA22870.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241520|gb|EGA25551.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248333|gb|EGA32269.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252901|gb|EGA36735.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323256977|gb|EGA40686.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260548|gb|EGA44159.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323264394|gb|EGA47900.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269528|gb|EGA52981.1| transcriptional regulatory protein TctD [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326624516|gb|EGE30861.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
gi|326628844|gb|EGE35187.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
gi|332989661|gb|AEF08644.1| regulatory protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. UK-1]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|257125818|ref|YP_003163932.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
gi|257049757|gb|ACV38941.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
Length = 226
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++++ ++K L Y V SC NG A + + + ++++DI++P +DG E
Sbjct: 2 RILVIEDEENLNDIIVKKLTMEKYGVDSCLNGTDALNYIFSTEYDVIVSDIMLPGLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E V+ +T + L KPF +L+ + LL
Sbjct: 62 ILKKIRENGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARIRVLLRR 118
>gi|194434141|ref|ZP_03066409.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
gi|218708083|ref|YP_002415602.1| DNA-binding response regulator CreB [Escherichia coli UMN026]
gi|256025318|ref|ZP_05439183.1| DNA-binding response regulator CreB [Escherichia sp. 4_1_40B]
gi|293403071|ref|ZP_06647168.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
gi|298378597|ref|ZP_06988481.1| two-component system [Escherichia coli FVEC1302]
gi|300896756|ref|ZP_07115262.1| response regulator receiver domain protein [Escherichia coli MS
198-1]
gi|301330244|ref|ZP_07222902.1| response regulator receiver domain protein [Escherichia coli MS
78-1]
gi|301646920|ref|ZP_07246765.1| response regulator receiver domain protein [Escherichia coli MS
146-1]
gi|307136599|ref|ZP_07495955.1| DNA-binding response regulator CreB [Escherichia coli H736]
gi|331640443|ref|ZP_08341591.1| transcriptional regulatory protein CreB [Escherichia coli H736]
gi|331661358|ref|ZP_08362282.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
gi|194417578|gb|EDX33679.1| transcriptional regulatory protein CreB [Shigella dysenteriae 1012]
gi|218435180|emb|CAR16138.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli UMN026]
gi|291429986|gb|EFF03000.1| transcriptional regulatory protein creB [Escherichia coli FVEC1412]
gi|298280931|gb|EFI22432.1| two-component system [Escherichia coli FVEC1302]
gi|300359412|gb|EFJ75282.1| response regulator receiver domain protein [Escherichia coli MS
198-1]
gi|300843750|gb|EFK71510.1| response regulator receiver domain protein [Escherichia coli MS
78-1]
gi|301074908|gb|EFK89714.1| response regulator receiver domain protein [Escherichia coli MS
146-1]
gi|320177680|gb|EFW52669.1| Two-component response regulator CreB [Shigella boydii ATCC 9905]
gi|331040189|gb|EGI12396.1| transcriptional regulatory protein CreB [Escherichia coli H736]
gi|331061273|gb|EGI33236.1| transcriptional regulatory protein CreB [Escherichia coli TA143]
gi|332083394|gb|EGI88625.1| transcriptional regulatory protein creB [Shigella boydii 5216-82]
gi|332098001|gb|EGJ02974.1| transcriptional regulatory protein creB [Shigella dysenteriae
155-74]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|92117963|ref|YP_577692.1| response regulator PleD [Nitrobacter hamburgensis X14]
gi|91800857|gb|ABE63232.1| response regulator receiver modulated diguanylate cyclase
[Nitrobacter hamburgensis X14]
Length = 457
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + L L ++V++ +NGA A + ++L DI+MP+MD
Sbjct: 1 MSARVLVVDDIPANVKLLEARLSAEYFDVMTASNGAQALEICARAKCDIVLLDIMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L+ V L
Sbjct: 61 GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + V + + A E + LL+ + + DG+
Sbjct: 157 RILLVDDRASSYERLASVLSAE-HTVDVETDPSEALFHAAENSYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAI-ADANSNTRLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|73541504|ref|YP_296024.1| two component heavy metal response transcriptional regulator
[Ralstonia eutropha JMP134]
gi|72118917|gb|AAZ61180.1| two component heavy metal response transcriptional regulator,
winged helix family [Ralstonia eutropha JMP134]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L K L ++ + V G + E + L++ D+++P M G +
Sbjct: 2 KILVVEDEPKTGEYLRKGLTESSFVVDVAVTGGDGLHQATEHEYDLIILDVMLPGMSGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E D V+F+T V L+KPF +L+ V LL
Sbjct: 62 VLRQLRER-KDTPVLFLTARDEVEDRVRGLELGGDDYLAKPFAFVELLARVRTLLRR 117
>gi|219667342|ref|YP_002457777.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537602|gb|ACL19341.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + K+LL +D++ + R + + L + YE++ +NG A + ++E L++ D+++P
Sbjct: 1 MKRTYKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPL 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ R E + ++ ++ + L KPF +L V LL
Sbjct: 61 IDGYEVCRTIRE-TSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|331091534|ref|ZP_08340371.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403699|gb|EGG83253.1| hypothetical protein HMPREF9477_01014 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 241
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD+ +R ++ L Y+ + NG A ++L D+ +P+MDGIE+
Sbjct: 9 VLVVEDDEPIRNLIVTTLEMEKYKFDTAENGKQAIMLAAANNPDIILMDLGLPDMDGIEV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ I+ + + L+KPF + +L + +
Sbjct: 69 IRKIRS-WSVVPIIVISARSDERDKVAALDVGADDYLTKPFSVVELSARLRATIRR 123
>gi|239623920|ref|ZP_04666951.1| two-component system protein response regulator [Clostridiales
bacterium 1_7_47_FAA]
gi|239521951|gb|EEQ61817.1| two-component system protein response regulator [Clostridiales
bacterium 1_7_47FAA]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEM 59
M KILL +D+ D+ + + L K G+ V+ NG A R+ +++ DI++P++
Sbjct: 1 MENKILLVDDEKDIVDLVEEVLRKEGFRVIQKAYNGTDALKICRDFQPDVIVLDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R+ + ++F++ + ++KPF R++V + L
Sbjct: 61 DGLEVCRQIRQ-FSYCSILFLSSKNDDVDKILGLSWGGDDYVTKPFSPREVVFRIKAQLR 119
Query: 120 IK 121
+
Sbjct: 120 RQ 121
>gi|167768929|ref|ZP_02440982.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
17241]
gi|167668569|gb|EDS12699.1| hypothetical protein ANACOL_00246 [Anaerotruncus colihominis DSM
17241]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + + + Y V + +G D + +++ D+++PE G E
Sbjct: 2 RVLIVEDERRLADALCQIMREQKYGVDAVYDGRDGLDYAMSGQYDVVVLDVMLPERSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + V+ +T ++ ++KPF +L+ V L +
Sbjct: 62 VVRALRAQNNAVPVLLLTARDEISDKVTGLDCGADDYMTKPFSPEELLARVRALSRRQ 119
>gi|28899632|ref|NP_799237.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
2210633]
gi|260895491|ref|ZP_05903987.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Vibrio parahaemolyticus Peru-466]
gi|28807884|dbj|BAC61121.1| transcriptional regulator CpxR [Vibrio parahaemolyticus RIMD
2210633]
gi|308088063|gb|EFO37758.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Vibrio parahaemolyticus Peru-466]
gi|328472243|gb|EGF43113.1| transcriptional regulator CpxR [Vibrio parahaemolyticus 10329]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G+EV N+G + + L+L D++MP+++G+E
Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAINS-DIDLILLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|315919295|ref|ZP_07915535.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313693170|gb|EFS30005.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1347
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED++++ + + L K Y V++ NG A + ++E ++++D++MPEMDG+E
Sbjct: 1096 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1154
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ +T + + +SKPF L+ L ++ L K
Sbjct: 1155 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAEK 1214
>gi|300310592|ref|YP_003774684.1| phosphate regulon two-component response regulator transcription
regulator protein [Herbaspirillum seropedicae SmR1]
gi|300073377|gb|ADJ62776.1| phosphate regulon two-component response regulator transcription
regulator protein [Herbaspirillum seropedicae SmR1]
Length = 245
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L +AG+ +N A+A+D V+ L+L D ++P+
Sbjct: 21 MT-TILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRS 79
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L R L V+ +T + ++KPF R+L + LL
Sbjct: 80 GLHLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALL 139
Query: 119 TIKN 122
K+
Sbjct: 140 RRKS 143
>gi|294497050|ref|YP_003560750.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294346987|gb|ADE67316.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + +++ L + GYEV + G + + L+ DI++P M G++
Sbjct: 2 RVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ + KV+F+T +V L KPF + +L + +L
Sbjct: 62 ILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLR 117
>gi|293608084|ref|ZP_06690387.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828657|gb|EFF87019.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325122199|gb|ADY81722.1| two component transcriptional regulator, winged helix family
[Acinetobacter calcoaceticus PHEA-2]
Length = 243
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L + G VV NG A + +P L++ DI MPE+ G E+
Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVVRAMNGKQAIEIHAAQPIDLVILDIKMPELSGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AATPVIMLTALDQEIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|266619511|ref|ZP_06112446.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
gi|288868919|gb|EFD01218.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
Length = 237
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
ILL EDD ++R + L GYEV +G + +E L + D++MP MDG
Sbjct: 3 TNHILLVEDDKEIREGVEIYLKSQGYEVFQAADGIEGLKILDQEEIHLAIVDVMMPRMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E D V+ ++ +SKPF +L+ VN L
Sbjct: 63 ITMTVKLREKY-DFPVIILSAKTEEVDKIMGLNIGADDYISKPFTPMELLARVNSQLRR 120
>gi|226308071|ref|YP_002768031.1| two-component response regulator PrrA [Rhodococcus erythropolis
PR4]
gi|229488493|ref|ZP_04382359.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
gi|226187188|dbj|BAH35292.1| two-component response regulator PrrA [Rhodococcus erythropolis
PR4]
gi|229323997|gb|EEN89752.1| DNA-binding response regulator PrrA [Rhodococcus erythropolis
SK121]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + KIL+ +DD D+ L + L +G+ V++ +GA A + ++ ++ DI MP
Sbjct: 1 MTEIPKILVVDDDADVLTSLERGLRLSGFTVLTAVDGADALRVISDKRPDAVVLDINMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + ++ + ++ +V + KPF L +LV + +L
Sbjct: 61 LDGTGVVTALRAAGNEIPICVLSARNSVDDRIAGLESGADDYMVKPFVLAELVARIRAML 120
Query: 119 TIKN 122
N
Sbjct: 121 RRSN 124
>gi|260589582|ref|ZP_05855495.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Blautia hansenii DSM 20583]
gi|260540150|gb|EEX20719.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Blautia hansenii DSM 20583]
Length = 235
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVM 56
M Q +L+ +DD ++ + K + + V+ +G ++E FSL++ D++M
Sbjct: 1 MKQ-VLIIDDDKELCALMKKCIEQENLSAVTAYSGIEGLQIIKENQNNNGFSLIILDVMM 59
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P M+G ++ ++ E+ ++ V+ +T + L+KPF + +L V+
Sbjct: 60 PYMNGFQVLKKIREV-SNIPVLMLTAKSNEEDKVLGLRLGADDYLTKPFSINELTARVHS 118
Query: 117 LLTI 120
L+
Sbjct: 119 LIRR 122
>gi|78356986|ref|YP_388435.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
gi|78219391|gb|ABB38740.1| histidine kinase [Desulfovibrio desulfuricans subsp. desulfuricans
str. G20]
Length = 647
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ R+ + L G V +G A V F L+ DI MP MDG+E
Sbjct: 294 VLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVENYDFDLIFMDIQMPRMDGLEA 353
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR +L V+ +T A S ++KP +L + + +
Sbjct: 354 CRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPIDPDELYAALANWIKRNH 413
Score = 96.7 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61
++L+A+D+ R L + L ++V +G A D V++ EPF ++L D MP +DG
Sbjct: 146 RVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMPGLDG 205
Query: 62 IELARRATELDPDLK--VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ AR +LD ++ ++ IT + + + + VL KP L+N + L
Sbjct: 206 LACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEIIDGVLLKPVARSLLLNTILDAL 264
>gi|15673576|ref|NP_267750.1| two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|12724600|gb|AAK05692.1|AE006390_2 two-component system regulator [Lactococcus lactis subsp. lactis
Il1403]
gi|326407060|gb|ADZ64131.1| Two-component system regulator [Lactococcus lactis subsp. lactis
CV56]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG
Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ARR + D ++ +T + ++KPF + +L+ V +
Sbjct: 63 FEVARRLRKE-KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121
>gi|328955049|ref|YP_004372382.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
gi|328455373|gb|AEB06567.1| two component transcriptional regulator, winged helix family
[Coriobacterium glomerans PW2]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+AEDD D+ L LG +GYEV + NGA A + +R E ++ L DI+MP+M+
Sbjct: 1 MADTVLIAEDDGDIIEILSLYLGGSGYEVRAARNGADALEILRREQVAVALVDIMMPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + A + ++ I+ A A ++KPF ++ + +L
Sbjct: 61 GYDLIKAARAE-SQVPIIIISARAEAADKIIGLDAGADGYITKPFDPLEVTAYIRAVLRR 119
>gi|295704202|ref|YP_003597277.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294801861|gb|ADF38927.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + L G++++ +G A+ K+ E L + DI+MP DG EL
Sbjct: 4 ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGWEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ V+ +T + KPF +++V V LL
Sbjct: 64 TKEIKE-YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRR 118
>gi|260772017|ref|ZP_05880934.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
gi|260612884|gb|EEX38086.1| transcriptional regulator CpxR [Vibrio metschnikovii CIP 69.14]
Length = 228
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G++V N+G S + +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTNLLKEVLSYEGFDVSEANDGQSGLAALNDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLRENW-TTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|260172987|ref|ZP_05759399.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides sp. D2]
gi|315921265|ref|ZP_07917505.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695140|gb|EFS31975.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1342
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++D R F+ +L Y V NG A++ ++EE L+++D++MP+MDG EL
Sbjct: 1096 LIVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1154
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + ++KPF++ LV + +L+ +
Sbjct: 1155 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIEL 1211
>gi|237726641|ref|ZP_04557122.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435167|gb|EEO45244.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1350
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1089 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1147
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1148 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207
Query: 120 IK 121
+
Sbjct: 1208 SR 1209
>gi|218261874|ref|ZP_03476559.1| hypothetical protein PRABACTJOHN_02230 [Parabacteroides johnsonii
DSM 18315]
gi|218223722|gb|EEC96372.1| hypothetical protein PRABACTJOHN_02230 [Parabacteroides johnsonii
DSM 18315]
Length = 227
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++LL ED+ + + L +EV+ NG + +E +++TDI+MP++
Sbjct: 1 MDKIRVLLVEDEPTLAMIIKDTLDGEEFEVILAANGEEGLSRYKETKPDIIVTDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R + D + V+F++ +A + L KPF + +L+ + LL
Sbjct: 61 DGFTMIRHIRKTDQQIPVLFLSARSAANDVVEGFELGGNDYLKKPFGMAELIIRIKALLN 120
>gi|254386776|ref|ZP_05002067.1| two-component system response regulator [Streptomyces sp. Mg1]
gi|194345612|gb|EDX26578.1| two-component system response regulator [Streptomyces sp. Mg1]
Length = 246
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G++V + +G +A LL+ D+++P DG+
Sbjct: 19 RRVLVVEDDHTIADAISARLRAEGFQVQTAYDGPAAVAAAETWLPELLVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|253700259|ref|YP_003021448.1| Fis family transcriptional regulator [Geobacter sp. M21]
gi|251775109|gb|ACT17690.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M21]
Length = 457
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ MR FL L GY V + A + E+ + ++++D++MP +
Sbjct: 1 MRARILVVDDELSMREFLSILLEGEGYLVDQAESAEDALRCMGEQRYEMVISDVLMPGLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL R P+ V+ IT F ++ + KPF + ++ V L
Sbjct: 61 GIELLSRIKSESPETAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEVKVLVRNALEK 120
Query: 121 KN 122
++
Sbjct: 121 QS 122
>gi|157371577|ref|YP_001479566.1| two component transcriptional regulator [Serratia proteamaculans
568]
gi|157323341|gb|ABV42438.1| two component transcriptional regulator, winged helix family
[Serratia proteamaculans 568]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL G+ V +G +A + E ++L++ D+ +P ++G+E
Sbjct: 2 RLLLVEDHPELSHWLQKALTGVGFAVDVAPDGLAADHLLLNESYALVVLDVALPRLNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + DL V+ +T VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQDLPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRR 118
>gi|330981352|gb|EGH79455.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 222
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGATEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|330949891|gb|EGH50151.1| response regulator protein [Pseudomonas syringae Cit 7]
Length = 220
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + +AL + GY V +G+SA + E F L + D+ +P + G E
Sbjct: 2 RLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L VM +T A L KPF + +L + LL
Sbjct: 62 VLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR 118
>gi|322513689|ref|ZP_08066784.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
25976]
gi|322120497|gb|EFX92404.1| phosphate regulon response regulator [Actinobacillus ureae ATCC
25976]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+KIL+ ED+ +R + L + Y+V+ + SA K+ +E L+L D ++P
Sbjct: 1 MNEKILIVEDEKAIREMIALFLLQQNYQVIDAEDYQSAVKKL-DEKPKLILLDWMLPGRS 59
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + E + ++ +T ++ ++KPF + L+ + LL
Sbjct: 60 GIQFIQYLKKSEETTQIPILMLTARSSEDDCITCLNTGADDYVTKPFSPKVLIARIEALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|309790923|ref|ZP_07685465.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
DG6]
gi|308227037|gb|EFO80723.1| two-component hybrid sensor and regulator [Oscillochloris trichoides
DG6]
Length = 1010
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L GY V NNG A D + + L+L DI MP MDGI
Sbjct: 892 RRILLVEDNTVNILTISDYLHSRGYTVAVANNGQEALDSIEQAQPELILMDIQMPVMDGI 951
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E RR + ++ ++ +T A A L+KP LR LV + +
Sbjct: 952 EATRRLRAMPAYSEIPIIALTALAMPGDRERCLAAGANAYLTKPISLRHLVQMIEEM 1008
>gi|301024924|ref|ZP_07188536.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
gi|300396299|gb|EFJ79837.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|300868139|ref|ZP_07112773.1| two-component response regulator [Oscillatoria sp. PCC 6506]
gi|300333874|emb|CBN57953.1| two-component response regulator [Oscillatoria sp. PCC 6506]
Length = 626
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 2 NQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
N+K +L+ +D L L + G+EV ++G SA V+ E ++L DI+MP +
Sbjct: 6 NKKSIVLVVDDHASNLAVLSDYLEQVGFEVWVASDGESALQAVQYEAPDIILLDIMMPCL 65
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E RR D+ ++F++ + + ++KPF +++ +
Sbjct: 66 DGFETCRRLKANPRTKDIPLIFMSALSETVDKVKGLSLGAVDYITKPFQHEEVLVRLRLH 125
Query: 118 LTI 120
L +
Sbjct: 126 LKM 128
>gi|260596416|ref|YP_003208987.1| DNA-binding response regulator CreB [Cronobacter turicensis z3032]
gi|260215593|emb|CBA27829.1| Transcriptional regulatory protein creB [Cronobacter turicensis
z3032]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ + L ED+ + L + G+ V + G A D R+ L++ D+ +P++
Sbjct: 1 MNQTTVWLVEDETSISEALAYVMQLEGFTVRTFERGLPALDAARQALPDLVVLDVGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL R+ P L V+F+T + ++KPF R++ V +L
Sbjct: 61 SGFELCRQLLAAYPALPVLFLTARSEEVDKLIGLEIGADDYVAKPFSPREVCARVRTILR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|256828201|ref|YP_003156929.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfomicrobium baculatum DSM 4028]
gi|256577377|gb|ACU88513.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfomicrobium baculatum DSM 4028]
Length = 487
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ +R +AL AG+ V +NG A K+ + F L+++D+ MP+M+G +
Sbjct: 6 HVLVVDDEPALREICEEALTGAGHAVTLASNGQDALGKLGAQGFDLVISDLRMPDMNGQD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + D+ + +TG+ D A ++KPF ++ L+ V +L +
Sbjct: 66 LLSQIRKRQLDVDFLVMTGYGTTETAVDIMKNGAADYIAKPFDIKHLLLRVRSILEQR 123
>gi|222082467|ref|YP_002541832.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
gi|221727146|gb|ACM30235.1| two-component response regulator protein [Agrobacterium radiobacter
K84]
Length = 243
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD ++R L + L + G+ V + ++ D + LL+ D+++P+ G++L
Sbjct: 9 VLIVDDDHEIRALLSRYLEEQGFRVSTASDLRGCNDALNRRAPDLLVLDVMLPDGSGLDL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R P + V+ +T L KPF+ R+L + +L N
Sbjct: 69 CRDLRNRRPRVPVILLTALKEDIDRILGLEIGADDYLGKPFNPRELAARIRAVLRRVN 126
>gi|172037422|ref|YP_001803923.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
gi|171698876|gb|ACB51857.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC
51142]
Length = 353
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D D + AL + G+++VS N+G SA ++ + P L+L D++MP MD
Sbjct: 1 MNHYILVVDDIPDNLLLIQLALEQDGHQLVSVNDGFSALAQIDQCPPDLILLDVMMPRMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ ++ + P + ++ IT + + KP + +L V LL
Sbjct: 61 GYEVTQKIRQNSRLPYIPILLITAH-EQSNVVKGLDTGADDFIRKPVQIDELQARVRSLL 119
Query: 119 TIK 121
+K
Sbjct: 120 RLK 122
>gi|197119652|ref|YP_002140079.1| sigma-54-dependent transcriptional response regulator AtoC
[Geobacter bemidjiensis Bem]
gi|197089012|gb|ACH40283.1| sigma-54-dependent transcriptional response regulator AtoC
[Geobacter bemidjiensis Bem]
Length = 458
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 53/118 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D++ +R L L GY V +G A E L+L DI MP+MD
Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARELPGLVLLDIWMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE +R E P L V+ ++G + S + KP L +V V L
Sbjct: 61 GIETLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENAL 118
>gi|325265151|ref|ZP_08131877.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324029555|gb|EGB90844.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ EDD ++R + L GY+V +G + + +E L + D++MP MDG
Sbjct: 3 TNHILIVEDDKEIREGVQIYLQSQGYKVYQAADGVEGLEVMEKEEIHLAIVDVMMPRMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 63 IRMTMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQLRR 120
>gi|293370487|ref|ZP_06617040.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292634479|gb|EFF53015.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1327
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 NQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
N++ +LL ED+ ++ ++L ++V S NG A + + E ++++DI+MPEM
Sbjct: 1076 NKRFIVLLVEDNVELLNLTRESLSDW-FKVFSACNGKEALEILSRESIDVIVSDIMMPEM 1134
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G+EL + V+ +T + + + KPF ++ L ++ L
Sbjct: 1135 NGLELCNYIKSDLVYSHIPVILLTAKTTLDSKAEGFENGADAYIEKPFSIKQLHKQIENL 1194
Query: 118 LTIK 121
L ++
Sbjct: 1195 LKLR 1198
>gi|269962482|ref|ZP_06176831.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
gi|269832778|gb|EEZ86888.1| Transcriptional regulatory protein CpxR [Vibrio harveyi 1DA3]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L GYEV N+G + + E L+L D++MP+++G+E
Sbjct: 4 ILLIDDDTELTSLLKEVLSFEGYEVSEANDGEAGLLAINSE-IDLVLLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|265752154|ref|ZP_06087947.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263236946|gb|EEZ22416.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1349
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1088 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1146
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1147 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1206
Query: 120 IK 121
+
Sbjct: 1207 SR 1208
>gi|315499320|ref|YP_004088124.1| two component transcriptional regulator phob, winged helix family
[Asticcacaulis excentricus CB 48]
gi|315417332|gb|ADU13973.1| two component transcriptional regulator PhoB, winged helix family
[Asticcacaulis excentricus CB 48]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K I++AED+D + L L K GYEV +G A + E LL+ D +MP+
Sbjct: 1 MSVKPYIIIAEDEDALSTLLQYNLEKEGYEVGVAIDGDEALMMINERQPDLLVCDWMMPK 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIE+ RR +L ++ +T + + KPF + +LV +
Sbjct: 61 VSGIEVTRRLRAQTETRNLPIVMLTARSEETDRIRGLDTGADDYVIKPFSMVELVARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 VLRR 124
>gi|229824657|ref|ZP_04450726.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
gi|229786028|gb|EEP22142.1| hypothetical protein GCWU000282_02004 [Catonella morbi ATCC 51271]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR---EEPFSLLLTDIVMPEMD 60
+IL+A+DD ++ L L GY+V+ NG A ++ + L++ DI+MP++D
Sbjct: 2 RILVADDDREIVELLNIYLHNEGYDVIKAYNGHQALSYIKNDVDHEIGLIILDIMMPKVD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + + V+ ++ ++ ++KPF+ +++ V +L
Sbjct: 62 GMQVLDKLRAANYETPVLMLSAKSSDQDKIQGLTSGADDYVTKPFNPLEIIARVKSILRR 121
Query: 121 KN 122
++
Sbjct: 122 QS 123
>gi|284037394|ref|YP_003387324.1| Fis family transcriptional regulator [Spirosoma linguale DSM 74]
gi|283816687|gb|ADB38525.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Spirosoma linguale DSM 74]
Length = 488
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + L + L ++GY+V+ +G SA ++ L+L DI+MP MDG E
Sbjct: 12 TILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILLDIMMPGMDGFE 71
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + + V+F+T + + ++KPF L+++++ ++ L+++
Sbjct: 72 TCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQLQEVLSRIHTHLSLR 131
>gi|237720365|ref|ZP_04550846.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229450116|gb|EEO55907.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1327
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 NQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
N++ +LL ED+ ++ ++L ++V S NG A + + E ++++DI+MPEM
Sbjct: 1076 NKRFIVLLVEDNVELLNLTRESLSDW-FKVFSACNGKEALEILSRESIDVIVSDIMMPEM 1134
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G+EL + V+ +T + + + KPF ++ L ++ L
Sbjct: 1135 NGLELCNYIKSDLVYSHIPVILLTAKTTLDSKAEGFENGADAYIEKPFSIKQLHKQIENL 1194
Query: 118 LTIK 121
L ++
Sbjct: 1195 LKLR 1198
>gi|237716635|ref|ZP_04547116.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262405410|ref|ZP_06081960.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294646191|ref|ZP_06723845.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|294809142|ref|ZP_06767860.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|229442618|gb|EEO48409.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|262356285|gb|EEZ05375.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|292638409|gb|EFF56773.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|294443696|gb|EFG12445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|295086291|emb|CBK67814.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1327
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 NQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
N++ +LL ED+ ++ ++L ++V S NG A + + E ++++DI+MPEM
Sbjct: 1076 NKRFIVLLVEDNVELLNLTRESLSDW-FKVFSACNGKEALEILSRESIDVIVSDIMMPEM 1134
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+G+EL + V+ +T + + + KPF ++ L ++ L
Sbjct: 1135 NGLELCNYIKSDLVYSHIPVILLTAKTTLDSKAEGFENGADAYIEKPFSIKQLHKQIENL 1194
Query: 118 LTIK 121
L ++
Sbjct: 1195 LKLR 1198
>gi|148260878|ref|YP_001235005.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
gi|326404273|ref|YP_004284355.1| putative two-component response regulator [Acidiphilium multivorum
AIU301]
gi|146402559|gb|ABQ31086.1| two component transcriptional regulator, winged helix family
[Acidiphilium cryptum JF-5]
gi|325051135|dbj|BAJ81473.1| putative two-component response regulator [Acidiphilium multivorum
AIU301]
Length = 233
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q I L +DD + + L + G+ V + +G SA + P L + DI MP MD
Sbjct: 1 MKQTIALVDDDRHILESVQMTLEQEGFAVRTYTDGESALQGLMTRPADLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + V+F+T ++KPF R L+ + LL
Sbjct: 61 GMELLQRLRAR-SAMPVIFLTSKDDELDELMGLRLGADDYITKPFSQRLLLERIRALLRR 119
>gi|29830515|ref|NP_825149.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|290959412|ref|YP_003490594.1| phosphate two component system response regulator [Streptomyces
scabiei 87.22]
gi|29607627|dbj|BAC71684.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
gi|260648938|emb|CBG72052.1| phosphate two component system response regulator [Streptomyces
scabiei 87.22]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|25026981|ref|NP_737035.1| putative response regulator [Corynebacterium efficiens YS-314]
gi|259508536|ref|ZP_05751436.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
gi|23492261|dbj|BAC17235.1| putative response regulator [Corynebacterium efficiens YS-314]
gi|259163886|gb|EEW48440.1| DNA-binding response regulator [Corynebacterium efficiens YS-314]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED++ + L L K G++ + +G +A + ++L D+++P M G +
Sbjct: 3 TILIVEDEESLADPLAFLLRKEGFDTIIAGDGPTALVEFSRNDIDIVLLDLMLPGMSGTD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + L ++ V+ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCKELR-LVSNVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRR 119
>gi|150019307|ref|YP_001311561.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149905772|gb|ABR36605.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + F+ L GY V +G A + R+ ++++ DI++P MDG E
Sbjct: 10 TILIVDDEKSIVDFIKMGLEGEGYLVYEAYDGNEAIELARKINPNIVILDIMLPGMDGYE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T V ++KPF ++L+ +N I+N
Sbjct: 70 VCSIIKKSIK-TSVIMLTALDEVDDKVKGLDIGADDYMAKPFSFKELLARINA--RIRN 125
>gi|183597266|ref|ZP_02958759.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
gi|188023581|gb|EDU61621.1| hypothetical protein PROSTU_00510 [Providencia stuartii ATCC 25827]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A + + LLL D++MP+ +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVIAYDGEQALQQ-LDSSIDLLLLDVMMPKKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + ++ V+ +T + L KPF+ R+LV + LL N
Sbjct: 61 ETLKELRQIH-QTPVIMLTARGSELDKVLGLELGADDYLPKPFNDRELVARIRALLRRSN 119
>gi|167840679|ref|ZP_02467363.1| DNA-binding heavy metal response regulator [Burkholderia
thailandensis MSMB43]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L + L +AG+ +G S +++ E + L + D+++P DG
Sbjct: 2 KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V L+KPF +L+ V LL
Sbjct: 62 VVRELRRTHR-TPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117
>gi|166364497|ref|YP_001656770.1| two component transcriptional regulator [Microcystis aeruginosa
NIES-843]
gi|166086870|dbj|BAG01578.1| two component transcriptional regulator [Microcystis aeruginosa
NIES-843]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
K+LL +D+ +R + L +EV + +N A+D + +E L+++DI+MP++DG
Sbjct: 6 KVLLVDDEPGVRESVQAYLQYGDDFEVRTASNANEAWDLLNQEIPELVISDIMMPQVDGY 65
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E + V+F+T + LSKPF +L + L+
Sbjct: 66 QFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIER 125
Query: 121 K 121
+
Sbjct: 126 R 126
>gi|86607308|ref|YP_476071.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86555850|gb|ABD00808.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 52/114 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ + RFL L GY V +G A R++ L+L D ++P + G
Sbjct: 8 SAHILVIEDEAKLARFLETELAYRGYRVSVVGDGTVALAAARDQNPDLVLLDWMLPGISG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+E+ R+ + V+ +T VA + KPF L++L+ +
Sbjct: 68 LEVCRQLRLTGNRVPVVLMTASDEVADRVAGLDAGADDYVVKPFSLQELLARIR 121
>gi|33863265|ref|NP_894825.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. MIT 9313]
gi|33640714|emb|CAE21169.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. MIT 9313]
Length = 245
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP---FSLLLTDIVMPEMD 60
++L+ EDDD +R + +AL G+E + C +G A + +P F L++ D+++P +
Sbjct: 18 RLLVVEDDDAIRETIGEALCAEGFETILCGDGFEAVSILTSQPRHKFDLIILDVMLPGIG 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ RR E DP ++ I+ L KPF +R+LV L
Sbjct: 78 GLDICRRLREFDPKTRIFMISARDNEIDRVLGLEVGADDYLVKPFSVRELVARCRAQLRR 137
>gi|329114976|ref|ZP_08243731.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
gi|326695419|gb|EGE47105.1| Transcriptional regulatory protein ChvI [Acetobacter pomorum DM001]
Length = 249
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + L G+ V + +G SA + P L + DI MP MDG
Sbjct: 18 KQTIALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALQGLTAYPVDLAVLDIKMPRMDG 77
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL +R +L V+F++ ++KPF R L+ + LL
Sbjct: 78 MELLQRLR-TRSNLPVIFLSSKNEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRR 135
>gi|229065319|ref|ZP_04200598.1| Two-component response regulator vanRB [Bacillus cereus AH603]
gi|228715969|gb|EEL67706.1| Two-component response regulator vanRB [Bacillus cereus AH603]
Length = 221
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD +++ + + L Y V ++G + ++ F L+L D++MP ++G
Sbjct: 3 NHHILVIEDDQEIQELIKQFLLTQQYTVEVASDGLEGMIQFNKQSFDLILLDVMMPNLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+A+ ++ ++ +T ++KPF L+ V +L
Sbjct: 63 FEVAKMIRSQ-SNVPIIMLTALEEEQDQMKGFDLGIDDYITKPFSFHVLIRRVEAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|291087543|ref|ZP_06571994.1| regulatory protein VanR [Clostridium sp. M62/1]
gi|291074707|gb|EFE12071.1| regulatory protein VanR [Clostridium sp. M62/1]
Length = 273
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD + + L G+EV+ +G A + ++ +L++ D++MP +DGI
Sbjct: 44 QKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGI 103
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ + + ++KPF+ +LV V L
Sbjct: 104 RTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 160
>gi|224537021|ref|ZP_03677560.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
14838]
gi|224521329|gb|EEF90434.1| hypothetical protein BACCELL_01897 [Bacteroides cellulosilyticus DSM
14838]
Length = 1332
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+++ + + L Y +++ NG A + VR E L+++D +MPEMDGIE
Sbjct: 1082 TILLVDDNEEFLLLMKRKLATH-YNILTATNGKKALEIVRSEDVDLMVSDYMMPEMDGIE 1140
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + V+ +T ++V L+KPF ++ L ++ L+
Sbjct: 1141 LCATMKQDINTSHIPVLMLTAKSSVEDQVRCFNAGANGYLTKPFDMKMLNARIDNLMK 1198
>gi|254470046|ref|ZP_05083450.1| two component transcriptional regulator, winged helix family
[Pseudovibrio sp. JE062]
gi|211960357|gb|EEA95553.1| two component transcriptional regulator, winged helix family
[Pseudovibrio sp. JE062]
Length = 233
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD +R L + LG+ G+ V + A ++ F LL+ D++MP GIE
Sbjct: 13 HILLIDDDSRIRDLLNRFLGENGFRVTVAKDAEEARRRLSGLEFDLLILDVMMPGESGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + ++ +T + + + +SKPF R+L+ ++ +L
Sbjct: 73 LAKDLR-RSKAVPILMLTARSEIEDRIEGLEAGVDDYVSKPFEPRELLLRISAILRR 128
>gi|254387142|ref|ZP_05002413.1| response regulator [Streptomyces sp. Mg1]
gi|194345958|gb|EDX26924.1| response regulator [Streptomyces sp. Mg1]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|189465171|ref|ZP_03013956.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
17393]
gi|189437445|gb|EDV06430.1| hypothetical protein BACINT_01516 [Bacteroides intestinalis DSM
17393]
Length = 1391
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ DMR ++ L Y + +G A + V++ L+++D++MP MDG
Sbjct: 1139 KETILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHTIDLIVSDLMMPVMDG 1197
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL+RR E + + +T + S + L KPF L + +L
Sbjct: 1198 MELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILN 1257
Query: 120 IK 121
++
Sbjct: 1258 LR 1259
>gi|91680588|emb|CAJ45044.1| PhoP protein [Streptomyces natalensis]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIAATGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|331671522|ref|ZP_08372320.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
gi|331071367|gb|EGI42724.1| transcriptional regulatory protein CreB [Escherichia coli TA280]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|291565675|dbj|BAI87947.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 216
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++++L +DD ++ + L GY+V NG A +K+ EE L++ DI+MPEMDG
Sbjct: 11 RRLMLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGY 70
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + E + V+F++ + KPF +L+ +V L
Sbjct: 71 TLVKLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLR 129
>gi|257091795|ref|YP_003165436.1| winged helix family two component heavy metal response
transcriptional regulator [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044319|gb|ACV33507.1| two component heavy metal response transcriptional regulator,
winged helix family [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 227
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ V +G E + L++ D+++P +DG
Sbjct: 2 KILVVEDEPKTGNYLKQGLLEAGFVVDLARDGEDGMHCALTEAYDLVILDVMLPGIDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ V+F+T V L KPF +L+ V LL
Sbjct: 62 VLRGIRKSGKDMPVLFLTARDHVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118
>gi|198283275|ref|YP_002219596.1| winged helix family two component transcriptional regulator
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218665852|ref|YP_002425862.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247796|gb|ACH83389.1| two component transcriptional regulator, winged helix family
[Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518065|gb|ACK78651.1| DNA-binding response regulator PhoB [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 243
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED++ ++ L L + G++V + SA ++ LL+ D ++P +G
Sbjct: 7 SSRVLVVEDEEGIQELLRVTLQRNGFDVRCEGSVESAEAVLQTWGPQLLVLDWMLPGKNG 66
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R L ++ +T L+KPF R+LV VN LL
Sbjct: 67 LAWCRMLRRREETRKLPIILLTARGEEGDRVHGLESGADDYLAKPFSPRELVARVNALLR 126
Query: 120 I 120
Sbjct: 127 R 127
>gi|83814704|ref|YP_445301.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Salinibacter ruber DSM 13855]
gi|83756098|gb|ABC44211.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Salinibacter ruber DSM 13855]
Length = 253
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62
++L+AEDD D+ L + GYEV G A ++ P L+L D+ +P+ DG
Sbjct: 14 RLLIAEDDPDLGSSLESFFAQHGYEVHHATEGEDALQEMTTLPPYDLVLLDVRLPQKDGF 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R A + D V+ +T ++KPF ++L V +L+
Sbjct: 74 EVLREARQSGVDSPVIMLTVKDEHEHKLRGFDLGADDYVTKPFDAKELAARVEAVLSR 131
>gi|27363525|ref|NP_759053.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
gi|37679274|ref|NP_933883.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
gi|27359641|gb|AAO08580.1| DNA-binding response regulator GltR [Vibrio vulnificus CMCP6]
gi|37198017|dbj|BAC93854.1| DNA-binding response regulator GltR [Vibrio vulnificus YJ016]
Length = 242
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
+IL+ +DD ++R L + L + GY+V + +G + E L+L DI++P DG
Sbjct: 6 RILVVDDDSEIRELLDEYLSRNGYQVATVADGHQLKHYLAENGYPELVLLDIMLPGEDGF 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ +T + ++KPF+ R LV + +L
Sbjct: 66 SLCQFMRRE-STVPIIMLTAVSEETDQIIGLEIGADDYIAKPFNPRHLVARIKAVLRR 122
>gi|116749523|ref|YP_846210.1| two component sigma54 specific Fis family transcriptional regulator
[Syntrophobacter fumaroxidans MPOB]
gi|116698587|gb|ABK17775.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Syntrophobacter fumaroxidans MPOB]
Length = 462
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ MR FL L K GY+V G A D ++ E + L++TDI M ++G++
Sbjct: 7 KILVVDDEASMREFLEIMLQKQGYQVTCAETGKEALDFIQNETYDLVITDIRMKPINGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + P V+ I+ +A+ + L KPF++ ++ + L K
Sbjct: 67 VLKQCKVISPSTVVIIISAYASAETAVAAMQEGAYDYLPKPFNVDEIRTVIENALRSK 124
>gi|333010491|gb|EGK29924.1| transcriptional regulatory protein creB [Shigella flexneri VA-6]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|326324767|dbj|BAJ84573.1| TCS response regulator CovR-like protein [Streptococcus equi subsp.
zooepidemicus]
Length = 228
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV NG + E+ F L+L D+ +PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVTVEVNGREGLETALEKDFDLILLDLKLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|317055319|ref|YP_004103786.1| winged helix family two component transcriptional regulator
[Ruminococcus albus 7]
gi|315447588|gb|ADU21152.1| two component transcriptional regulator, winged helix family
[Ruminococcus albus 7]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL +D+ +R + + GYEV +G A + V+ + F +++ DI+MP +DG
Sbjct: 3 KILAVDDEAKIRTIIREYAEFEGYEVAEAADGMEAVEMVKNDDFDIIVMDIMMPRLDGYS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + V+ ++ + KPF ++L+ V +L
Sbjct: 63 ACKEIQKIKK-IPVIMLSARGEEYDKLFGFEIGIDDYMVKPFSPKELMARVRAVLNR 118
>gi|303328169|ref|ZP_07358608.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
gi|302861995|gb|EFL84930.1| DNA-binding response regulator ColR [Desulfovibrio sp. 3_1_syn3]
Length = 238
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL ED++D+ L L GYE+ +G + E F ++ D+++P +D
Sbjct: 1 MPVSLLLIEDNEDILANLYAYLEPLGYELDCARHGRTGLSMALEGRFDCIVLDVMLPGLD 60
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ L R E + V+ +T VA L KPF L++L + LL
Sbjct: 61 GVSLCRNLREEHHSAVPVLMLTARDTVADRVRGLEAGADDYLVKPFALKELEARIRALLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|300854762|ref|YP_003779746.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300434877|gb|ADK14644.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 226
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 59/112 (52%), Gaps = 1/112 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ M F+ L GY++ + +G A +KV ++ + L+L DI++P ++GIE
Sbjct: 5 RILLVEDEKQMSMFIQMELTHEGYKIDAAYDGREALEKVEDKEYDLILLDIMIPNLNGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ RR + + ++ +T + + LSKPF + +L+ +
Sbjct: 65 VCRRIRQ-FSHVPIIMLTAKSDIPDKVLGLDAGANDYLSKPFAIEELLARIR 115
>gi|256833021|ref|YP_003161748.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
gi|256686552|gb|ACV09445.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ + + + L G+ +G +A D ++ D+++P +D
Sbjct: 1 MS-TILIVEDEPAIATAIAQRLTAEGWRTEVARDGLAAVDAAARLQPDAVVLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR P + V+ +T ++KPF +R+LV + LL
Sbjct: 60 GLEVCRRIQADRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELVARLKALLRR 118
>gi|198276879|ref|ZP_03209410.1| hypothetical protein BACPLE_03084 [Bacteroides plebeius DSM 17135]
gi|198270404|gb|EDY94674.1| hypothetical protein BACPLE_03084 [Bacteroides plebeius DSM 17135]
Length = 232
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+++ L + L GY +G + + + L++TD++MP DG
Sbjct: 6 RILLCEDDENLGMLLREYLQAKGYNADLFPDGEVGFKAFLKSKYDLVVTDVMMPRKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +L + +L
Sbjct: 66 LAQEIRQANAEVPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAILRR 122
>gi|124006366|ref|ZP_01691200.1| response Regulator Receiver Signal Transduction Histidine Kinase
[Microscilla marina ATCC 23134]
gi|123988023|gb|EAY27694.1| response Regulator Receiver Signal Transduction Histidine Kinase
[Microscilla marina ATCC 23134]
Length = 382
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D ++ L GY+++ +G SA ++V L+L DI+MP ++
Sbjct: 9 MKGKILIVDDTPANIGVILSYLRDQGYKMLVAEDGESAIEQVGFMKPDLILMDIMMPGLN 68
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E + D+ ++F++ ++KPF +++ + L
Sbjct: 69 GFETCTSLKANKETADIPIIFMSALNETVDKVKGFQLGAVDYITKPFQQEEVLARIKTHL 128
Query: 119 TIKN 122
+++
Sbjct: 129 KMES 132
>gi|332185053|ref|ZP_08386802.1| phosphate regulon transcriptional regulatory protein PhoB
[Sphingomonas sp. S17]
gi|332014777|gb|EGI56833.1| phosphate regulon transcriptional regulatory protein PhoB
[Sphingomonas sp. S17]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + K+LL EDD + L+ + +EVV +G A RE ++L D ++ +
Sbjct: 1 MARVKMLLVEDDAALAELLVFHFKREDFEVVHTPDGEEALLLARENTPDIVLLDWMVEGI 60
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR ++ ++ +T ++KPF R+LV V +
Sbjct: 61 SGIEVCRRLRRAPETANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|312864239|ref|ZP_07724473.1| response regulator receiver domain protein [Streptococcus
vestibularis F0396]
gi|311100240|gb|EFQ58449.1| response regulator receiver domain protein [Streptococcus
vestibularis F0396]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILLAED++ + R AL GYEV NG A D + + +++ DI+MP
Sbjct: 1 MALKILLAEDEEALSRVYKAALEHQGYEVDQAFNGQEAVDLAAQNAYQVMIMDIMMPIKT 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + V+ +T A + L+KP L++L+ + L
Sbjct: 61 GIEALKEIRSSGDRTHVIMLTAMAEIDDRVTGLDAGADDYLTKPISLKELLARLRS-LER 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|310827211|ref|YP_003959568.1| two-component response regulator [Eubacterium limosum KIST612]
gi|308738945|gb|ADO36605.1| two-component response regulator [Eubacterium limosum KIST612]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+A+D+ D+ + L G+EVV NG A D+ ++ L++ D++MP+ G
Sbjct: 6 KKRILIADDNQDICELVEILLTAEGFEVVQAKNGQEAVDR-TDDSIDLIILDVMMPQKSG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++F+T + + LSKPF +LV+ V LL
Sbjct: 65 YKACSEIREKTR-VPILFLTAKDQDSDKVMGFSVGGDDYLSKPFSYTELVSRVKSLLRR 122
>gi|326773621|ref|ZP_08232904.1| DNA-binding response regulator [Actinomyces viscosus C505]
gi|326636851|gb|EGE37754.1| DNA-binding response regulator [Actinomyces viscosus C505]
Length = 219
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + FL K L AG+ + G A +E F L++ D+ +P++D
Sbjct: 1 MS-RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGGQAVALAVQEDFDLIILDVGLPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ ++ V+ +T ++VA + KPF +L+ + L
Sbjct: 60 GFEVLQQLRGQGVGTPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118
>gi|294790736|ref|ZP_06755894.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
gi|294458633|gb|EFG26986.1| DNA-binding response regulator MtrA [Scardovia inopinata F0304]
Length = 241
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + + L G+ +GASA L+L DI++P MDG+E
Sbjct: 14 VLVVEDEPTLATAIGQRLASEGWNTRITGDGASAVHIAASYKPDLILMDIMLPVMDGLEA 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R T P + V+ +T ++KPF +R+LV LL
Sbjct: 74 TKRITAARP-VPVLMLTARDDETDKVIGLGAGADDYMTKPFSMRELVARCKALLRR 128
>gi|294498881|ref|YP_003562581.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294348818|gb|ADE69147.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD +R + L G++++ +G A+ K+ E L + DI+MP DG EL
Sbjct: 4 ILVADDDQHIRELISLYLENQGFKIIKAADGEEAWAKMEEFRIDLAVVDIMMPFKDGWEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ V+ +T + KPF +++V V LL
Sbjct: 64 TKEIKE-YFDIPVLMVTARGESHDKLKGFDIGTDDYVVKPFDPQEMVARVKALLRR 118
>gi|294338490|emb|CAZ86816.1| Transcriptional regulatory protein [Thiomonas sp. 3As]
Length = 456
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD D+R+ L L AGY V+ +GA A + S ++TD+ M MD
Sbjct: 1 MPATVLLVDDDPDLRQLLAIRLRSAGYAPVTAASGAEALGSLAASRPSAVITDLRMDGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L DP L V+ +T + D+ L+KPF R+L+ + R + +
Sbjct: 61 GLSLFEHIRAQDPSLPVIILTAHGTIPDAVDATQRGVFGFLTKPFEARELLALLERAIAL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|264676273|ref|YP_003276179.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|299533391|ref|ZP_07046773.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
gi|262206785|gb|ACY30883.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|298718597|gb|EFI59572.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
Length = 249
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L + G + +G A R+ L+L DI +P++DG+++
Sbjct: 22 VLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIHLPKVDGVDV 81
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D D+ V+ +T A + + KPF+ ++V V +L
Sbjct: 82 LRMIRN-DSDVPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRR 136
>gi|229142249|ref|ZP_04270771.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
gi|228641187|gb|EEK97496.1| Two-component response regulator [Bacillus cereus BDRD-ST26]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GYEV++ +G D +E SL++ DI++P MD
Sbjct: 6 KKVLIVEDEQIIRETVAHYFSHDGYEVITAEDGQIGLDLFAEQEHNISLVILDIMLPLMD 65
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + + ++ ++ +T + ++KPF L+ RL
Sbjct: 66 GWSVCRRIRK-NSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPSILLARAKRL 121
>gi|213610069|ref|ZP_03369895.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 215
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|251795715|ref|YP_003010446.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247543341|gb|ACT00360.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +LL EDD + L G+EV +G + + L++ D+++P+M+
Sbjct: 1 MIKSVLLIEDDTTIAELQRDYLEINGFEVQVAADGEAGLAMSLSGHYDLVILDLMIPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ +T ++KPF +LV V L
Sbjct: 61 GFEVCKKIREKQ-DIPILIVTSLHDDIDVIRGLGLGADDYITKPFKPAELVARVKAHLAR 119
>gi|169828266|ref|YP_001698424.1| ethylene receptor [Lysinibacillus sphaericus C3-41]
gi|168992754|gb|ACA40294.1| Ethylene receptor [Lysinibacillus sphaericus C3-41]
Length = 1015
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ R + L Y++V+ +G A ++ + L+++D++MP+M G E
Sbjct: 683 RILVVDDEPINLRVVETILANEPYDIVTVTSGIEALVCIQSHEWDLVISDVMMPKMSGYE 742
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + DL V+ +T + + ++KP +L + V L+ +K
Sbjct: 743 LVRLIRKQFSITDLPVLLLTARSQPQDLENGFLAGANDYVTKPVDALELRSRVAALIKVK 802
>gi|329905059|ref|ZP_08273989.1| Phosphate regulon transcriptional regulatory protein PhoB
[Oxalobacteraceae bacterium IMCC9480]
gi|327547769|gb|EGF32543.1| Phosphate regulon transcriptional regulatory protein PhoB
[Oxalobacteraceae bacterium IMCC9480]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + L +AG+ ++ N A A++ ++ L+L D ++P+ G+
Sbjct: 7 TILIVEDEPSIVELVSYTLREAGWNTMAVNTTAEAWEFIQRRTPHLILLDWMLPDQSGLR 66
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + V+ +T ++KPF R+L + LL K
Sbjct: 67 LLSRIRADRQLQAIPVIMLTAKTMEEDKIAGLDNGADDYVTKPFSPRELTARIKALLRRK 126
Query: 122 N 122
+
Sbjct: 127 S 127
>gi|228984473|ref|ZP_04144650.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775176|gb|EEM23565.1| Two-component response regulator [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 209
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
MR+ + L GYE NG A K+ + ++ DI+MPEMDG + + +
Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKEALKKLETNHYDFVVLDIMMPEMDGHSVCKEIRK-TS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++F+T + + KPF +L+ + +L
Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106
>gi|227506135|ref|ZP_03936184.1| response regulator [Corynebacterium striatum ATCC 6940]
gi|227197242|gb|EEI77290.1| response regulator [Corynebacterium striatum ATCC 6940]
Length = 268
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG++ + G A D+ R +++ D+ +PE+DG+E
Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDETRRFSPDVVVLDLGLPELDGLE 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D ++ +T + ++KPF +R+LV V+ +L
Sbjct: 102 VCRRIR-TFSDCYILMLTARGSEDDKISGLTLGADDYITKPFSIRELVTRVHAVLRR 157
>gi|297201979|ref|ZP_06919376.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197712640|gb|EDY56674.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 225
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVSTAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPIQGRVLDARIRAVLRR 118
>gi|89899389|ref|YP_521860.1| two component transcriptional regulator [Rhodoferax ferrireducens
T118]
gi|89344126|gb|ABD68329.1| two component transcriptional regulator, winged helix family
[Rhodoferax ferrireducens T118]
Length = 240
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L G+ + ASA ++ ++L D ++P G+ L
Sbjct: 7 VLIVEDEPAIAELIAVNLRHNGFRPTWAMDSASAQRELDAVLPDVILLDWMLPGESGLAL 66
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
A+R + ++ +T ++KPF ++L+ + +L +
Sbjct: 67 AKRWRAHPRTKAIPIIMLTARGDETDRVAGLDAGADDYIAKPFSTKELLARMRAVLRRR 125
>gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 242
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ +R + L G+E+ +G ++K + L+++DI+MP +G
Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEIFIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T +SKPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYISKPFDPDELSARVKNVINRQ 135
>gi|109897848|ref|YP_661103.1| two component transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|109700129|gb|ABG40049.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ Q+IL+ ED+ + + L+ L G+ +NG A D +R + ++ D+++P
Sbjct: 1 MSNQQQILIVEDEPKIAQILVDFLTIEGFATQVVHNGDEAEDAIRTKTPDCVILDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + + + + ++ +T + KPF R++V V +L
Sbjct: 61 KDGLSICKDVRK-FSQVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|308185491|ref|YP_003929623.1| two-component system regulatory protein [Pantoea vagans C9-1]
gi|308055771|gb|ADO07941.1| two-component system regulatory protein [Pantoea vagans C9-1]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD D L L + YEV+ +G + L+L DI++P M+G
Sbjct: 3 SKRVLIIEDDADAAGVLEAYLKRENYEVMIAGDGPGGLETAGRWQPDLILLDIMLPGMNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D D V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLAALRRRD-DTPVIMVTAMGDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120
>gi|289424048|ref|ZP_06425834.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
gi|289155473|gb|EFD04152.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
Length = 231
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
KIL+ ED+ +R F+ L + GYEV+ GA A +K+ E+ SL L DI++P+ GI
Sbjct: 3 KILILEDEIGIRSFVSINLKREGYEVIEAGTGAEAIEKLSTEKNISLALLDIMLPDTSGI 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ V+ +T + + + KPF +++L+ V L+
Sbjct: 63 EICKYIRKEFDNMGVIMLTAKSQEDDKIEGFQSGADDYIVKPFSIKELLMRVQALIRR 120
>gi|239625973|ref|ZP_04669004.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239520203|gb|EEQ60069.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AEDD + R+ + L G+ + ++G A + L + DI+MP MDG EL
Sbjct: 4 ILIAEDDKNTRKLMEAVLKSNGFNPIPASSGEEALKLLDSHHIDLAVLDIMMPGMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +D +L ++ +T ++KP ++V + LL
Sbjct: 64 TTQLRSMDYNLPILMVTAKLLPEDKRKGFMAGTDDYMTKPVDEEEMVLRIRALLRR 119
>gi|218130978|ref|ZP_03459782.1| hypothetical protein BACEGG_02580 [Bacteroides eggerthii DSM 20697]
gi|217986850|gb|EEC53182.1| hypothetical protein BACEGG_02580 [Bacteroides eggerthii DSM 20697]
Length = 238
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED++ + + L + + + +G + +L+ D++MP M
Sbjct: 1 MDKIKVLLVEDEETLAMIIKDTLEGQNFIINTATDGEEGLRLFFDLRPDVLVADVMMPRM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 DGFEMVRRIRQTDKYTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIVRIKAL 118
>gi|160942867|ref|ZP_02090106.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
M21/2]
gi|158445768|gb|EDP22771.1| hypothetical protein FAEPRAM212_00343 [Faecalibacterium prausnitzii
M21/2]
gi|295103953|emb|CBL01497.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 234
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
++L+ ED+ ++R + L AG EVV + +A + ++P + D+++P M+G
Sbjct: 3 RVLVVEDEANIRDMIALNLRHAGMEVVEAESAEAALPLLAQKPGCDAAILDVMLPGMNGF 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D + ++ ++ + ++KPF + +L+ V L
Sbjct: 63 SLCETIRRTDQQIGIIILSAKGQEQDKIRGLSIGADDYMTKPFSVSELLARVEALCRR 120
>gi|118593336|ref|ZP_01550720.1| two-component response regulator [Stappia aggregata IAM 12614]
gi|118434014|gb|EAV40671.1| two-component response regulator [Stappia aggregata IAM 12614]
Length = 239
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD ++RR + L K G+ + +G + ++ D+++P DG
Sbjct: 5 KHTILIVDDDPEIRRLVGDVLRKEGFGIEQAMSGRDMDAVLERVKPDAVVLDLMLPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + RR D L ++F++ + KPF R+ V V LL
Sbjct: 65 LSICRRLRADD-TLPILFLSARGDEVDRVVGLEIGADDYIVKPFAPREFVARVRALLRR 122
>gi|104781839|ref|YP_608337.1| DNA-binding response regulator [Pseudomonas entomophila L48]
gi|95110826|emb|CAK15541.1| putative DNA-binding response regulator [Pseudomonas entomophila
L48]
Length = 220
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G S ++ E F L++ D+ +P MDGIE
Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHEAFDLVILDLGLPRMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A+ L KPF L +L + LL
Sbjct: 62 LLRRVRAGGDSLPVLILTARDALDDRISGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|313680794|ref|YP_004058533.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313153509|gb|ADR37360.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 220
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +DD ++ R + L GY V + +G +A +++R ++ +L D+++P +D
Sbjct: 1 MPERVLVVDDDPNLLRLVEANLRARGYAVDTAASGEAALERLRMAGYACVLLDLMLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R A D+ ++ ++ ++ L KPF + +L+ V +
Sbjct: 61 GMTVIREARG-FCDVPIVVMSALGEEERKVEALDLGADDYLVKPFGVAELLARVRAAIRR 119
>gi|331681384|ref|ZP_08382021.1| transcriptional regulatory protein CreB [Escherichia coli H299]
gi|331081605|gb|EGI52766.1| transcriptional regulatory protein CreB [Escherichia coli H299]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|300812623|ref|ZP_07093036.1| response regulator receiver domain protein [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300496404|gb|EFK31513.1| response regulator receiver domain protein [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 222
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRATGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLARLR 113
>gi|209525497|ref|ZP_03274036.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Arthrospira maxima CS-328]
gi|209493996|gb|EDZ94312.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase [Arthrospira maxima CS-328]
Length = 598
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L + L K GY+V +G +A ++V + L+L DI+MP++DG +
Sbjct: 14 ILIVDDTPGNLHLLSRILRKKGYQVREAIDGKTALEEVNNKLPDLILLDIMMPDIDGYTV 73
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++F++ + + +SKPF ++++ V LT++
Sbjct: 74 CNQLKSDPNTAEVPIIFLSALDDIFDKVKAFESGGVDYISKPFQFQEVLIRVKNQLTLR 132
>gi|197250760|ref|YP_002147681.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197214463|gb|ACH51860.1| DNA-binding response regulator TctD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
Length = 224
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALAVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|56552218|ref|YP_163057.1| winged helix family two component transcriptional regulator
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241761709|ref|ZP_04759796.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|260752274|ref|YP_003225167.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|56543792|gb|AAV89946.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241374017|gb|EER63550.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|258551637|gb|ACV74583.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 235
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + L G+ V ++G +A + + E P L++ DI MP MD
Sbjct: 1 MTASIALVDDDRNILASVSMTLQSEGFSVRVYSDGKTALNALLESPPDLVVLDIKMPIMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR E + V+F+T A ++KPF LR L+ + LL
Sbjct: 61 GMEVLRRLREK-SMVPVIFLTSKDDELDEALGLASGADDYIAKPFSLRLLIARIRALLRR 119
>gi|29349146|ref|NP_812649.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29341054|gb|AAO78843.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1330
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L AGY + SC+NG A ++E L+++DI+MPEM G
Sbjct: 1078 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1136
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T ++KPF + L + +L
Sbjct: 1137 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILAN 1196
Query: 121 K 121
+
Sbjct: 1197 R 1197
>gi|332879261|ref|ZP_08446958.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
gi|332682681|gb|EGJ55581.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Capnocytophaga sp. oral taxon 329 str. F0087]
Length = 1414
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED D+ R FL++ L K + VV +G R E L+++D++MP MDG+
Sbjct: 1156 KKILVVEDHDEFRHFLMEQLQK-DFCVVEARDGVEGEQAARTELPDLIVSDLMMPRMDGM 1214
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + + +T ++ +SKPF+ L + +L+
Sbjct: 1215 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1274
Query: 121 K 121
K
Sbjct: 1275 K 1275
>gi|307823691|ref|ZP_07653919.1| two component transcriptional regulator, winged helix family
[Methylobacter tundripaludum SV96]
gi|307734985|gb|EFO05834.1| two component transcriptional regulator, winged helix family
[Methylobacter tundripaludum SV96]
Length = 226
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD+ + F+ + L GY V NG A F ++ D+ +P+++G +
Sbjct: 2 RVLLVEDDERIVDFVQRGLKAEGYAVEVARNGLDAIALGSAGKFQAIILDLGLPDLNGRQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + ++ +T V ++KPF +L+ + L+ ++
Sbjct: 62 VCERLRDAGVGTPILMLTARDTVQDKVTGLRSGADDYMTKPFAFEELLARIEALMRRRS 120
>gi|297537697|ref|YP_003673466.1| winged helix family two component transcriptional regulator
[Methylotenera sp. 301]
gi|297257044|gb|ADI28889.1| two component transcriptional regulator, winged helix family
[Methylotenera sp. 301]
Length = 230
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ L + +AG+ + + A + +RE L+L D ++P M+
Sbjct: 1 MPANILVVEDEPAIQELLALNITQAGHNAMRALSVEIAQNLMRETIPDLILLDWMLPGMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E AR L + ++ +T ++KPF R+L + +L
Sbjct: 61 GLEFARLLKSDNLTKTIPIIMLTARGDEYDKVRGLEVGADDYVTKPFSPRELNARIKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|258592053|emb|CBE68358.1| putative response regulator in two-component reguatory system,
sigma54 dependent transcriptional regulator [NC10
bacterium 'Dutch sediment']
Length = 455
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ KIL+ +DD D+R + L G+EVV ++G A ++REE ++ L D+ MP+
Sbjct: 3 MSRAKILVVDDDTDIREVIRDRLKAMGFEVVEASDGEQALVRLREELPTITLLDLHMPKK 62
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ + E + + +T +A + ++ L+KPF L + + L
Sbjct: 63 SGLEVLQAIRENGLETTTIVMTAYATIEKAVEAMRVGAYDFLTKPFSPGHLEVVIGKALE 122
Query: 120 IK 121
+
Sbjct: 123 RE 124
>gi|302543545|ref|ZP_07295887.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC
53653]
gi|302461163|gb|EFL24256.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC
53653]
Length = 236
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G + ++ R + + L D+++P +
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|228990905|ref|ZP_04150869.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
12442]
gi|228768842|gb|EEM17441.1| Two-component response regulator vanR [Bacillus pseudomycoides DSM
12442]
Length = 245
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M Q+ IL+ +DD D+ + + L + + V+ G A + + L++ DI+MP M
Sbjct: 14 MKQQSILIVDDDADIVQLIEVHLRQEEFRVLRAYTGGEALNILDINDIQLVILDIMMPAM 73
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ RR E + VMF++ A + ++KPF + +LV V L
Sbjct: 74 DGIEVCRRIRERH-TIPVMFLSAKATDIDKVIGLSTGADDYITKPFSMMELVARVKAQLR 132
Query: 120 I 120
Sbjct: 133 R 133
>gi|254468051|ref|ZP_05081457.1| two component transcriptional regulator, winged helix family [beta
proteobacterium KB13]
gi|207086861|gb|EDZ64144.1| two component transcriptional regulator, winged helix family [beta
proteobacterium KB13]
Length = 233
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ ED++ + + L ++ + N A +++ L+L D ++P M
Sbjct: 1 MNKPNILIVEDEESILEMIALNLHHNNFQPLRAINAEIAESFLKKNEVDLILLDWMLPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DGI+ +R ++ VM +T + + L+KPF ++L+ + +
Sbjct: 61 DGIDFLKRIRTNSNTNEIPVMMLTAKNEESNKIEGFDVGADDYLAKPFSQKELIARIKAI 120
Query: 118 LTIK 121
L K
Sbjct: 121 LRRK 124
>gi|261408735|ref|YP_003244976.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261285198|gb|ACX67169.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 228
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +D+ + F+ L + G+ +++ + G A K RE SL++ D ++PE+
Sbjct: 1 MAHTLLLVDDERKVIEFMEPFLRQEGFHIITASTGTEALAKAREAKPSLVVLDWMLPELS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + + ++ +T ++KPF LR+L + +L
Sbjct: 61 GIEVCRELRK-SSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRR 119
>gi|21223763|ref|NP_629542.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|256785143|ref|ZP_05523574.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289769037|ref|ZP_06528415.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|6808396|emb|CAB70633.1| probable two-component system response regulator [Streptomyces
coelicolor A3(2)]
gi|289699236|gb|EFD66665.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 222
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L K L GY V ++G + E + L++ DI++P ++G
Sbjct: 2 RLLIVEDEKRLAVSLAKGLTAEGYAVDVVHDGLEGLHRAGEGVYDLVILDIMLPGLNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ ++ +T + L+KPF LV V LL +
Sbjct: 62 VCAALRAAGHDVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARVKALLRRR 119
>gi|330836392|ref|YP_004411033.1| two component transcriptional regulator, winged helix family
[Spirochaeta coccoides DSM 17374]
gi|329748295|gb|AEC01651.1| two component transcriptional regulator, winged helix family
[Spirochaeta coccoides DSM 17374]
Length = 251
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D++ + L + GY V+ +G A ++++ +L+L D+++PE+ G+E+
Sbjct: 18 VLIVEDETDIQELISYHLKQEGYSVLQALDGRQALEQIKVGTPNLVLLDLMLPELSGLEV 77
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L V+ + + ++KPF + L+ V +L
Sbjct: 78 LKTIRYSWGMTALPVLIASARTEESDIIMGLEIGADDYITKPFSPKVLIARVKAILRR 135
>gi|269794263|ref|YP_003313718.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269096448|gb|ACZ20884.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 223
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD + + L G++ V C +G +A R L+L D+++P DG E+
Sbjct: 2 LVVDDDTALAEMIGLVLKTEGFDPVFCADGDAAIGIFRSTSPDLVLLDVMLPGKDGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ +T + +SKPF ++LV + L
Sbjct: 62 RQIRAE-SGVPVIMLTAKSDTVDVVQGLESGADDYISKPFKPKELVARIRARLRR 115
>gi|265751167|ref|ZP_06087230.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263238063|gb|EEZ23513.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1270
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ D+ +L L Y++ NG A D + E L+++D++MP MDG+E
Sbjct: 1020 HILVVDDNQDLLDYLRMLLAPR-YQITCALNGKEALDLLSELMPDLVISDVMMPVMDGME 1078
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + L V+ +T + ++KPF + +++ LL+ +
Sbjct: 1079 LCRKIKQNFRTSHLPVVLLTAKVETGDYVEGLENGADLYVAKPFSSDIIKAQIHSLLSNR 1138
>gi|254881403|ref|ZP_05254113.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254834196|gb|EET14505.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1348
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1089 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1147
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1148 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207
Query: 120 IK 121
+
Sbjct: 1208 SR 1209
>gi|218233154|ref|YP_002369467.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|229048376|ref|ZP_04193944.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
gi|229152869|ref|ZP_04281052.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
gi|218161111|gb|ACK61103.1| DNA-binding response regulator [Bacillus cereus B4264]
gi|228630689|gb|EEK87335.1| hypothetical protein bcere0011_44010 [Bacillus cereus m1550]
gi|228723101|gb|EEL74478.1| hypothetical protein bcere0027_43440 [Bacillus cereus AH676]
Length = 229
Score = 142 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISR 118
>gi|319642790|ref|ZP_07997428.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317385534|gb|EFV66475.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1353
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1089 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1147
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1148 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTAANLIR 1207
Query: 120 IK 121
+
Sbjct: 1208 SR 1209
>gi|313672415|ref|YP_004050526.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
gi|312939171|gb|ADR18363.1| two component transcriptional regulator, winged helix family
[Calditerrivibrio nitroreducens DSM 19672]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++ L L GYEV + +NG + +K+++ ++L+L D+ +P++
Sbjct: 1 MACKILIIDDDYEILDMLKILLEVEGYEVDTASNGFTGLEKLKKSSYNLILLDLNLPDIA 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + + + +L ++ ++ +V ++KPF +L+ + +L
Sbjct: 61 GEQLCKAIRK-NSELPILILSAKESVTDKVLCLEYGADDYITKPFQNIELIARIKAILRR 119
>gi|256854939|ref|ZP_05560300.1| response regulator [Enterococcus faecalis T8]
gi|256709452|gb|EEU24499.1| response regulator [Enterococcus faecalis T8]
gi|315030108|gb|EFT42040.1| putative regulatory protein VanR [Enterococcus faecalis TX4000]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+A+DD ++ L + GYEVV +G A K+ P LL+ DI+MP MDG+
Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ +T ++KPF+ +++ V +L
Sbjct: 62 EVVKELRKE-SQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118
>gi|304317383|ref|YP_003852528.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778885|gb|ADL69444.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 222
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ MR L L K ++ +G + D + F ++L D+++P+M G
Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDAFFAEDGNTGIDMFKNNSFDIVLLDVMLPDMSGWN 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + VM IT + + KPF R++V + +L+
Sbjct: 63 VLKTIRE-SSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVVARIKAILSR 118
>gi|237711528|ref|ZP_04542009.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229454223|gb|EEO59944.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1379
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1117 KYKLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNG 1175
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1176 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1235
Query: 120 IK 121
+
Sbjct: 1236 SR 1237
>gi|237726015|ref|ZP_04556496.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435823|gb|EEO45900.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1379
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1117 KYKLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNG 1175
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1176 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1235
Query: 120 IK 121
+
Sbjct: 1236 SR 1237
>gi|219683981|ref|YP_002470364.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis AD011]
gi|219621631|gb|ACL29788.1| response regulator of two-component system [Bifidobacterium
animalis subsp. lactis AD011]
Length = 239
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ + + + L G+ +GA+A + L++ D+++P MDGI
Sbjct: 12 RTILVVEDEPTLATAIAQRLTNEGWTARVAGDGATAVKAADKLHPDLIIMDLMLPVMDGI 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T A +SKPF +R+LV LL
Sbjct: 72 EATKRIEAQHP-IPVLMLTARDDEADVVIGLGVGADDYMSKPFSMRELVARERALLRR 128
>gi|219667582|ref|YP_002458017.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219537842|gb|ACL19581.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 228
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD ++ L GY+V +GA+ K + +L+ D+++P++DG
Sbjct: 2 KNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGTYDILIVDLMLPQLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ ++ + L+KPF +L+ + L
Sbjct: 62 EIIKEVRKKL-EIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118
>gi|210609626|ref|ZP_03288077.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
gi|210152816|gb|EEA83822.1| hypothetical protein CLONEX_00261 [Clostridium nexile DSM 1787]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y + NG A + + ++L D+ +P+M
Sbjct: 1 MNKPLILVVEDDTAIRNLITTTLETQDYRFHTAPNGVQALLESVSQKPDIMLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ ++ +L ++ I+ + D+ L+KPF + +L+ + L
Sbjct: 61 DGIEIIKKVRS-WSNLPIIVISARSEDRDKIDALDAGADDYLTKPFSVDELLARLRVTLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|154495761|ref|ZP_02034457.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
29799]
gi|150274959|gb|EDN02007.1| hypothetical protein BACCAP_00040 [Bacteroides capillosus ATCC
29799]
Length = 248
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD D+ + L KAG+ +G + + L+L D ++P MDG+E
Sbjct: 25 HILMVEDDADLCGAVEIHLKKAGHTADMAYDGEDGLHFALQNAYDLILLDRMLPGMDGLE 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + V+ +T V+ D L+KPF +L+ + L+ +
Sbjct: 85 LVSRLRKAGITAPVLMVTALDGVSDRVDGLDAGADDYLTKPFAAEELLARIRA-LSRR 141
>gi|118595246|ref|ZP_01552593.1| phosphate regulon transcriptional regulatory protein phoB
[Methylophilales bacterium HTCC2181]
gi|118441024|gb|EAV47651.1| phosphate regulon transcriptional regulatory protein phoB
[Methylophilales bacterium HTCC2181]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + + L +AG+ + + A +++ L++ D ++P MD
Sbjct: 1 MAASILIVEDEESILELIAINLHQAGFNPIRSLSAEFAEKIIQKNLPDLIILDWMLPGMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E A+R + ++ +T + ++KPF ++L+ + +L
Sbjct: 61 GVEFAKRIRGSSTTRKIPIIMLTAKSEEDNKLKGLNIGADDYMTKPFSPKELIARIKAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|332306808|ref|YP_004434659.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174137|gb|AEE23391.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 244
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMD 60
KILL +DD+ + L + L G+EV + + G +A + ++ + F ++ DI+MP M
Sbjct: 5 KYKILLVDDDETLCALLSEFLQAEGFEVETLHTGDAATERLLQSDEFDTVVLDIMMPGMS 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + ++ +TG L KP + R+L + ++
Sbjct: 65 GLDVLRSVRAKR-QVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRR 123
>gi|319648966|ref|ZP_08003175.1| YcbL protein [Bacillus sp. BT1B_CT2]
gi|317388960|gb|EFV69778.1| YcbL protein [Bacillus sp. BT1B_CT2]
Length = 230
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q ILL EDD + + L K G+EVV +G ++ + +L DI++P+++G+
Sbjct: 2 QHILLIEDDHSISEMVDHYLTKEGFEVVLAFDGEEGVRLFQQGNYDAILLDIMLPKLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + V+ I+ ++KPF + +L + +
Sbjct: 62 DFLKMIREQ-SKVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARIKAAIRR 118
>gi|307277355|ref|ZP_07558453.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
gi|306505989|gb|EFM75161.1| putative regulatory protein VanR [Enterococcus faecalis TX2134]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+A+DD ++ L + GYEVV +G A K+ P LL+ DI+MP MDG+
Sbjct: 2 KILVADDDKEIVELLSIYIHNEGYEVVKAYDGKEALSKLHTTPDIDLLILDIMMPIMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ +T ++KPF+ +++ V +L
Sbjct: 62 EVVKELRKE-SQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSILRR 118
>gi|261868867|gb|ACY02044.1| two-component system sensor histidine kinase/response regulator
[Flammeovirga yaeyamensis]
Length = 1385
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ +R + L Y+V +NG + D ++ +L+++DI+MPEMDG
Sbjct: 1127 KAKILVIDDNFSIREMMKDLLKDT-YDVYLADNGKNGLDLAKKIMPNLIISDIMMPEMDG 1185
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL +R E + L ++ +T + ++KPF+ L+ + L+
Sbjct: 1186 YELTQRIREDNHICHLPIILLTAKKSEESKLKGYEYGVDAYVTKPFNSEVLLARILTLIE 1245
Query: 120 -IKN 122
KN
Sbjct: 1246 NRKN 1249
>gi|238925300|ref|YP_002938817.1| two-component response regulator [Eubacterium rectale ATCC 33656]
gi|238876976|gb|ACR76683.1| two-component response regulator [Eubacterium rectale ATCC 33656]
gi|291524406|emb|CBK89993.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
gi|291527577|emb|CBK93163.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ D+ + L GYEV+ NG A D V+ L+L DI+MP MDGIE
Sbjct: 3 KVLVCDDEKDIVSAISIYLTSDGYEVIPARNGLEALDIVKHNDVHLVLMDIMMPVMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ V+ +T + ++KPF+ +L V +
Sbjct: 63 AMVEIRKI-SNVPVILLTAKSEDTDKVLGLTVGADDYVTKPFNPVELQARVKSQIRR 118
>gi|229062519|ref|ZP_04199832.1| Two-component response regulator [Bacillus cereus AH603]
gi|228716802|gb|EEL68493.1| Two-component response regulator [Bacillus cereus AH603]
Length = 242
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++R+ + L GYEV+ +G + VR+ L++ DI+MP++DGI
Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQARDGEEGLEIVRKRDVHLIVLDIMMPKIDGIH 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 74 MCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129
>gi|258406510|ref|YP_003199252.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
gi|257798737|gb|ACV69674.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
Length = 458
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 56/116 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ +R L L + G+EV NG A +V +++ DI MP + G+E
Sbjct: 11 RVLVVDDEEALRLMLRAVLEEQGWEVDEAANGEKALHRVTALEPQVIVLDIRMPGISGLE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + V+ +T + V ++ L+KP ++++ ++R L
Sbjct: 71 VLGRLQADYRHIPVIMLTAYGTVDTAVEAMKLGAFDFLAKPADNEEIISVLDRALE 126
>gi|224540392|ref|ZP_03680931.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM
14838]
gi|224517994|gb|EEF87099.1| hypothetical protein BACCELL_05305 [Bacteroides cellulosilyticus DSM
14838]
Length = 1421
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L Y V+ NGA A + + + +++D++MP MDGIEL
Sbjct: 1168 ILVVEDNADMRGYIRSILRDY-YNVLEACNGAEAIEILNRQSIDFIVSDLMMPVMDGIEL 1226
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR E + + + +T + +S + L KPF L+ + +L +
Sbjct: 1227 SRRVKETFANSHIPFLMLTAKTSPEARLESYRTGVDEYLLKPFDETLLLTRIENILENR 1285
>gi|220906417|ref|YP_002481728.1| two component LuxR family transcriptional regulator [Cyanothece sp.
PCC 7425]
gi|219863028|gb|ACL43367.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7425]
Length = 221
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + + L +GY VV+ NG A + + LL+TDIVMPEMD
Sbjct: 1 MPLTILIVDDEPGISLSVSDYLQLSGYSVVTAANGKQALEMLNRYQPHLLITDIVMPEMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G +L R+ + L V+F+TG LSKPF L +L V LL
Sbjct: 61 GYDLVRQVRQQPAFRLLPVIFLTGRNKTKERIRGYQSGCDVYLSKPFELEELGAVVRNLL 120
Query: 119 TI 120
Sbjct: 121 DR 122
>gi|169827613|ref|YP_001697771.1| putative sensory transduction protein [Lysinibacillus sphaericus
C3-41]
gi|168992101|gb|ACA39641.1| Hypothetical sensory transduction protein [Lysinibacillus
sphaericus C3-41]
Length = 220
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 46/113 (40%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+DD +R + L G EV+ +G A K+ E +++ DI+MP MDG L
Sbjct: 2 VDDDAHIRELVRVFLQNEGLEVIEATDGVDALSKLASEKVDMVIMDIMMPNMDGWALCEE 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
DL ++ +T A L KPF +L+ V +L
Sbjct: 62 IRSYHTDLPILMLTAKGETAQKVKGFHLGTDDYLVKPFEPAELIVRVKSILKR 114
>gi|157372130|ref|YP_001480119.1| DNA-binding response regulator CreB [Serratia proteamaculans 568]
gi|157323894|gb|ABV42991.1| two component transcriptional regulator, winged helix family
[Serratia proteamaculans 568]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + L ED+ + LI L G++V G A + + +L + D+ +P+++
Sbjct: 1 MKPTLWLVEDEPSIADTLIYTLESEGFQVRWFERGEPALQALAQGAPALAILDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G EL RR DL ++F+T + ++KPF R++ V +
Sbjct: 61 GFELCRRLLSQSADLPILFLTARSDELDRLIGLEIGADDYVAKPFSPREVSARVRTI 117
>gi|318056507|ref|ZP_07975230.1| putative two-component system response regulator [Streptomyces sp.
SA3_actG]
gi|318075902|ref|ZP_07983234.1| putative two-component system response regulator [Streptomyces sp.
SA3_actF]
gi|333026723|ref|ZP_08454787.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
gi|332746575|gb|EGJ77016.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
Length = 225
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G K+REE L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|300867480|ref|ZP_07112131.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
gi|300334474|emb|CBN57299.1| Two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
Length = 378
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L + GY+V NG A ++E P +L+L D++MP+M+G E+
Sbjct: 13 ILVVDDTPDNVRLLSTILTEEGYQVRKALNGQRALTTIQEFPPALILLDVMMPDMNGYEV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + V+F++ V + ++KPF R+++ V L I+N
Sbjct: 73 CKKLKDSPQTSSIPVIFLSALDHVLDKVKAFEVGGVDYITKPFQEREVLVRVANQLMIQN 132
>gi|284053870|ref|ZP_06384080.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira platensis str. Paraca]
Length = 286
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + G ++ NG A + L+L DIVMP+MDG E
Sbjct: 8 TILIVEDNRSNLSLIADTIANVGCQIAIATNGIEAIAQAEAIQPDLILLDIVMPKMDGFE 67
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ V+ +T A + ++KPF +++ VN L I+
Sbjct: 68 TCRRLKQNPSTCNIPVILMTALDDTADKVKGLSLGAVDYITKPFQPEEVLARVNVHLKIR 127
>gi|253699327|ref|YP_003020516.1| Fis family transcriptional regulator [Geobacter sp. M21]
gi|251774177|gb|ACT16758.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M21]
Length = 469
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ +R L + L + V + +G A + ++++ F L++TD+ MP M
Sbjct: 1 MN--ILVVDDESVIRDGLARILEGDSFTVDTAKSGHVAIEHLQQKEFDLIITDLKMPGMS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ L P+ V+ ITGFA V ++ + KPF ++ +V+ L
Sbjct: 59 GFEVLAAVKTLQPETPVIMITGFATVETAVEAMKNGTVDYIVKPFTPEQILEKVHLALEQ 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|238024581|ref|YP_002908813.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
gi|237879246|gb|ACR31578.1| Multi-sensor Hybrid Histidine Kinase [Burkholderia glumae BGR1]
Length = 1416
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+A+D+ DMR ++ + LG+ YEV +G A + L+L+DI+MP +DG
Sbjct: 624 STRILVADDNADMRAYVQRLLGEQ-YEVSCAVDGYDALRAAKRSRPDLILSDIMMPGLDG 682
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL- 118
I L + E D+ V+ ++ A L KPF R+LV V LL
Sbjct: 683 IGLLQTVRGDEELRDVPVILLSARAGEEARVHGLRAGADDYLVKPFSARELVVRVGALLK 742
Query: 119 ----TIKN 122
K+
Sbjct: 743 ITAQRRKS 750
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D L L G+ V + A + L DI +P M G E
Sbjct: 1301 RVLIVDDNVDAADSLSALLRLQGHTVEVAYSAEDAIRCAEAFCPQVALLDIGLPGMSGYE 1360
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
LAR ++++ +TG+ ++ + L KP LV
Sbjct: 1361 LARTLRAKPRLAGMRLVAVTGYGQTNDVHTAHEAGFDEHLVKPVEPSALVR 1411
>gi|224536021|ref|ZP_03676560.1| hypothetical protein BACCELL_00885 [Bacteroides cellulosilyticus
DSM 14838]
gi|224522364|gb|EEF91469.1| hypothetical protein BACCELL_00885 [Bacteroides cellulosilyticus
DSM 14838]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|160915463|ref|ZP_02077674.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
gi|158432583|gb|EDP10872.1| hypothetical protein EUBDOL_01471 [Eubacterium dolichum DSM 3991]
Length = 235
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R + + GY V NG + + +++E L + DI+MP MD
Sbjct: 1 MEYNILIVEDEVGIRETISVFMKNQGYHVYVAENGMAGLELLQKEDIHLAIVDIMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D+ V+F++ + ++KPF +L+ VN L
Sbjct: 61 GITMTMKLRENY-DIPVIFLSAKSEDIDKITGLNVGADDYVTKPFEPMELIARVNSNLRR 119
>gi|163853174|ref|YP_001641217.1| response regulator receiver [Methylobacterium extorquens PA1]
gi|218531978|ref|YP_002422794.1| transcriptional regulator [Methylobacterium chloromethanicum CM4]
gi|240140593|ref|YP_002965073.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Methylobacterium extorquens AM1]
gi|254563083|ref|YP_003070178.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression [Methylobacterium
extorquens DM4]
gi|163664779|gb|ABY32146.1| response regulator receiver [Methylobacterium extorquens PA1]
gi|218524281|gb|ACK84866.1| two component transcriptional regulator, winged helix family
[Methylobacterium chloromethanicum CM4]
gi|240010570|gb|ACS41796.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Methylobacterium extorquens AM1]
gi|254270361|emb|CAX26357.1| response regulator in two-component regulatory system with EnvZ,
regulates ompF and ompC expression (OmpR family)
[Methylobacterium extorquens DM4]
Length = 241
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ + + L V +G + + L++ D+++P DG+
Sbjct: 10 HILVVEDDREISALVARYLRANECRVSVAGDGREMDRVLADARVDLIVLDLMLPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + L KPF+ R+L+ + +L K
Sbjct: 70 LCRRLRAA-SQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 126
>gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 237
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G+EV + +G + K ++ +++TD++MP +DG
Sbjct: 12 RLLLVDDEPGLRSAVQAYLEDEGFEVTTAVDGEEGFGKAQQLLPDVVITDVMMPRLDGYG 71
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + V+F+T A + KPF +LV V + +
Sbjct: 72 LLTRLRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 131
>gi|308067232|ref|YP_003868837.1| regulator of cell autolysis [Paenibacillus polymyxa E681]
gi|305856511|gb|ADM68299.1| Putative regulator of cell autolysis [Paenibacillus polymyxa E681]
Length = 1039
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
K+L +DD+ R L + L G VV+ ++ A + F L++TD +MPEM GI
Sbjct: 706 KVLAVDDDEVNLRVLEELLYTTGCSVVAVDHAEEALHMLNGRTRFDLVITDWMMPEMSGI 765
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR E +L V+ +T L KP +L V LL +
Sbjct: 766 ELCRRIRERYSLSELPVLLLTARDLPGDIRAGFMAGANDFLRKPVDAEELKARVRTLLNM 825
Query: 121 KN 122
++
Sbjct: 826 RH 827
>gi|265752955|ref|ZP_06088524.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263236141|gb|EEZ21636.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1379
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED D+R +L Y ++ NG R+E L++TD++MP M+G
Sbjct: 1117 KYKLLVVEDHADIRLYLKVLFSAT-YNIIMAENGEEGVRIARKEIPDLVITDVMMPIMNG 1175
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R E + ++ +T + KPF+ L +V RL+
Sbjct: 1176 FECCRILKEDLKTCHIPIILLTALTDDENIVKGIELGADDYILKPFNPEILRTKVKRLIK 1235
Query: 120 IK 121
+
Sbjct: 1236 SR 1237
>gi|227875996|ref|ZP_03994118.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
gi|269977100|ref|ZP_06184074.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
gi|306819276|ref|ZP_07452986.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|307700171|ref|ZP_07637214.1| putative Transcriptional regulatory protein WalR [Mobiluncus
mulieris FB024-16]
gi|227843420|gb|EEJ53607.1| possible response regulator [Mobiluncus mulieris ATCC 35243]
gi|269934931|gb|EEZ91491.1| transcriptional regulatory protein WalR [Mobiluncus mulieris 28-1]
gi|304647942|gb|EFM45257.1| response regulator [Mobiluncus mulieris ATCC 35239]
gi|307614630|gb|EFN93856.1| putative Transcriptional regulatory protein WalR [Mobiluncus
mulieris FB024-16]
Length = 238
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+++IL+ +D+ D+ + L GY +V + ++ +A +R + D+++P+ +
Sbjct: 8 DRRILIVDDEPDILELVRTTLENEGYTQVETASSARAAGQILRTTKPEAAILDVMLPDGN 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + D+ V+F+T ++KPF+ +L + +L
Sbjct: 68 GFVLCDEIRK-TRDIPVIFLTARDEPTDKFQGLGMGADDYITKPFYPEELALRLAAVLRR 126
>gi|217977019|ref|YP_002361166.1| two component transcriptional regulator PhoB, winged helix family
[Methylocella silvestris BL2]
gi|217502395|gb|ACK49804.1| two component transcriptional regulator PhoB, winged helix family
[Methylocella silvestris BL2]
Length = 265
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L L G+ V G A ++ E L++ D ++P + G+E
Sbjct: 29 RILIVEDEAALSMLLAYNLEAEGFVVDRVERGDEAEIRLSETMPDLVILDWMLPGVSGLE 88
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L V+ +T + + + KPF + +L+ V LL
Sbjct: 89 ICRRMRAREATRSLPVIMLTARGEESERVRGLSIGADDYVVKPFSVPELMARVRSLLRR 147
>gi|167950458|ref|ZP_02537532.1| Response regulator receiver [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 283
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ KI L+ +DD +++ + K L +G + ++G S ++E L+L D+ MP
Sbjct: 1 MSDKINVLIIDDDRFVQKLISKTLAASGLSTRTADDGESGIAIAQQEQPDLILLDVEMPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
++G E+ R L D+ V+F++ + L KPF L+ +N
Sbjct: 61 INGYEVCDRLRSLPETQDIPVVFLSSHGTLRERLQGYEVGADDYLVKPFEAEHLLARINV 120
Query: 117 LLT 119
L+
Sbjct: 121 LMR 123
>gi|71737704|ref|YP_273433.1| sensory box protein/response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71558257|gb|AAZ37468.1| sensory box protein/response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
Length = 705
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|313905958|ref|ZP_07839313.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313469218|gb|EFR64565.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 236
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ EDD +R + LG YE + NG +A + ++ D+ +P+M
Sbjct: 1 MSKASILVVEDDPPVRNLITTTLGMHQYEYLVAGNGQTAIMQAASHNPDVIFLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ R+ ++ ++ I+ + A ++ L+KPF + +L+ + L
Sbjct: 61 DGVDVIRKVR-TWTEIPIIVISARSEEADKIEALDAGADDYLTKPFSVEELLARLRVSLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|300313830|ref|YP_003777922.1| response regulator protein [Herbaspirillum seropedicae SmR1]
gi|300076615|gb|ADJ66014.1| response regulator protein [Herbaspirillum seropedicae SmR1]
Length = 237
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPE 58
M +KIL+ +DD R L L K YEV ++GA+ + + + SL++ D+++P+
Sbjct: 1 MTRKILIVDDDQKTRTLLKAYLEKNQYEVRLAHDGATFLAEFQRLADELSLVILDVMLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG L + ++ V+ +T + ++KP+ R+L+ + +
Sbjct: 61 TDGFALCKAVRRK-SNVPVIMLTASSDETDRVVGLELGADDYIAKPYSPRELLARIKAIH 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|163814967|ref|ZP_02206354.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
gi|158449650|gb|EDP26645.1| hypothetical protein COPEUT_01117 [Coprococcus eutactus ATCC 27759]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + L +EV NG + +K E +SL+L D+++P+MD
Sbjct: 1 MS-KILIIEDELSIAELERDYLELNDFEVEIEPNGINGLEKALSEEYSLILLDLMLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E D+ ++ +T ++KPF +LV V ++
Sbjct: 60 GFEICRQIREK-KDIPIIMVTAKKNDIDKIRGLGLGVDDYVTKPFSPSELVARVKAHISR 118
>gi|332139945|ref|YP_004425683.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
'Deep ecotype']
gi|327549967|gb|AEA96685.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii str.
'Deep ecotype']
Length = 247
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-DKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++ L L GY+V NNG + V + L+L D++MP+MDG +
Sbjct: 20 ILVIDDDLELTEMLATYLSGMGYQVQVRNNGEEGLSEAVSGRHYDLILLDVMMPKMDGFD 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T L KPF+ R+LV + ++ N
Sbjct: 80 VLKKLRSSHS-TPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 137
>gi|295093812|emb|CBK82903.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus sp.
ART55/1]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ + L AGY V NG A D V L+L D++MP+MDGI
Sbjct: 4 ILICDDEKDIVSAIEIYLKTAGYSVYKAYNGMEAVDMVNSNDIQLVLMDVMMPQMDGITA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ V+ +T + ++KPF+ +L+ V L
Sbjct: 64 MAKIRE-SSNVPVIMLTAKSEDTDKVLGLEVGADDYVTKPFNPVELLARVKSQLRR 118
>gi|253571309|ref|ZP_04848716.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251839262|gb|EES67346.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1333
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L AGY + SC+NG A ++E L+++DI+MPEM G
Sbjct: 1081 QRILVVEDNDDLRNYLVDML-MAGYNIQSCSNGKDALVIIKEFNPDLVISDIMMPEMSGD 1139
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T ++KPF + L + +L
Sbjct: 1140 ELCSAIKTSVEMSHIPVILLTALGDEKNILGGLEIGADAYITKPFSVGILKVTIKNILAN 1199
Query: 121 K 121
+
Sbjct: 1200 R 1200
>gi|251792230|ref|YP_003006952.1| transcriptional regulatory protein QseB [Aggregatibacter
aphrophilus NJ8700]
gi|247533619|gb|ACS96865.1| transcriptional regulatory protein QseB [Aggregatibacter
aphrophilus NJ8700]
Length = 223
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L K+G+ V +G + + P+ ++ D+ +P+MDG++
Sbjct: 2 RILLIEDDPLIGNGIQIGLTKSGFAVDWFTDGKIGLEAAQSAPYDAVVLDLTLPKMDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D+ V+ +T V L KPF L ++V ++ L+ +
Sbjct: 62 VLQAWRQKGIDVPVLILTARDTVDERITGLQRGADDYLCKPFALAEVVARLHALIRRR 119
>gi|255659043|ref|ZP_05404452.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
20544]
gi|260848481|gb|EEX68488.1| DNA-binding response regulator VicR [Mitsuokella multacida DSM
20544]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDDD + L G+EV +G S R++ + L+L DI++P +DG
Sbjct: 2 KKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ V+ +T + KPF+ +LV V +
Sbjct: 62 AVCRELR-RYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIAR 118
>gi|153840529|ref|ZP_01993196.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
gi|149745809|gb|EDM56939.1| transcriptional regulator CpxR [Vibrio parahaemolyticus AQ3810]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G+EV N+G + V L+L D++MP+++G+E
Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFEVSEANDGEAGLAAVNS-DIDLILLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|118589317|ref|ZP_01546723.1| phosphate regulon transcriptional regulatory protein [Stappia
aggregata IAM 12614]
gi|118438017|gb|EAV44652.1| phosphate regulon transcriptional regulatory protein [Stappia
aggregata IAM 12614]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ + L L GY V SC G A ++RE LLL D ++P + GIE
Sbjct: 3 KVLIVEDEEPLSLLLRYNLEAEGYSVESCVRGDEAEIRLRESLPDLLLLDWMLPGLSGIE 62
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A + + KPF + +L+ V +L
Sbjct: 63 LCRRLRAREDTERLPVIMLTARGEEAERIRGLSTGADDYVVKPFSVPELMARVRAILRR 121
>gi|15839182|ref|NP_299870.1| two-component system, regulatory protein [Xylella fastidiosa 9a5c]
gi|9107813|gb|AAF85390.1|AE004066_4 two-component system, regulatory protein [Xylella fastidiosa 9a5c]
Length = 266
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ +R + AL K +E + ++ A + + L+L D ++P G+
Sbjct: 38 KRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGL 97
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + L ++ ++ +T + + KPF R+L+ + ++
Sbjct: 98 ELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRR 157
>gi|89896612|ref|YP_520099.1| hypothetical protein DSY3866 [Desulfitobacterium hafniense Y51]
gi|89336060|dbj|BAE85655.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 228
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD ++ L GY+V +GA+ K + +L+ D+++P++DG
Sbjct: 2 KNILIIEDDVNIAELERDYLQLNGYQVDIVLDGATGLKKAVSGAYDILIVDLMLPQLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ ++ + L+KPF +L+ + L
Sbjct: 62 EIIKEVRKKL-EIPIIVLSARSEDIDKIRGLDYGADDYLTKPFSPAELMARIRSHLKR 118
>gi|332185060|ref|ZP_08386809.1| response regulator [Sphingomonas sp. S17]
gi|332014784|gb|EGI56840.1| response regulator [Sphingomonas sp. S17]
Length = 236
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD +R +AL + G+ V N + + L+L DI++P GI+
Sbjct: 5 TILIVEDDPALRTLTARALQENGFAVKLANAAPEMWQALEVGQIDLILLDIMLPGTSGID 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + + ++FI+ + L KPF R+LV + +L
Sbjct: 65 LCRQVRQRNA-VPIIFISAKGSEVDRVVGLELGADDYLPKPFSTRELVARIRAVLRR 120
>gi|325125597|gb|ADY84927.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 222
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRSAGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLARLR 113
>gi|319786347|ref|YP_004145822.1| two component transcriptional regulator, winged helix family
[Pseudoxanthomonas suwonensis 11-1]
gi|317464859|gb|ADV26591.1| two component transcriptional regulator, winged helix family
[Pseudoxanthomonas suwonensis 11-1]
Length = 238
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + ++ D+++P +DGIE+
Sbjct: 11 VLVVEDNRNISEMIGEYLESRGFEVDYAADGLDGYRLAAENSYDAVVLDLMLPRLDGIEV 70
Query: 65 ARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR V+ +T + L+KPF +++L + L+ +
Sbjct: 71 CRRLRSDARKSTPVLMLTARDTLDDKLTGLGHGADDYLTKPFAIQELEARLRALIRRE 128
>gi|297563588|ref|YP_003682562.1| two component transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848036|gb|ADH70056.1| two component transcriptional regulator, winged helix family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 234
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+AEDD + + + L G+ V ++G +A + L++ D++MP M
Sbjct: 1 MCAHVLVAEDDVNQADLIRRYLEHEGHFVRVVHDGRAAVAAHHRDRPDLVVLDVMMPVMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ R D+ V+ +T + ++KP+ R+L+ V LL
Sbjct: 61 GLDACRALRAE-SDVAVLMLTARSTEEDLLTGLDLGADDYVTKPYSPRELMARVRTLLRR 119
>gi|294788094|ref|ZP_06753338.1| phosphate regulon transcriptional regulatory protein PhoB
[Simonsiella muelleri ATCC 29453]
gi|294484387|gb|EFG32070.1| phosphate regulon transcriptional regulatory protein PhoB
[Simonsiella muelleri ATCC 29453]
Length = 232
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED+ + + L +AG++V + + + ++ L+L D ++P+
Sbjct: 1 MSIHILIVEDEAAIATLIRFNLEQAGFQVSVSGSVEESKILINKQLPDLILLDWMLPQTS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ + +L ++ +T + ++KPF R+LV VN LL
Sbjct: 61 GVQFVGQLRADSRTRELPIILLTARSEDVDKETGLNQGADDYITKPFSPRELVARVNALL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|228991332|ref|ZP_04151289.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228768395|gb|EEM17001.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 238
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ ++ L L G+ ++ +G SA + +++ L + DI+MP ++
Sbjct: 1 MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + + ++ ++ +SKPF L +++ + L
Sbjct: 61 GYELIKIVRKEYK-MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRR 119
>gi|227487201|ref|ZP_03917517.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
gi|227092859|gb|EEI28171.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867]
Length = 227
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + L L K G++ + +G +A + + L+L D+++P M G +
Sbjct: 3 TVLIVEDELSLAEPLAFLLKKEGFDAIIATDGRTALVEFNKNDIDLVLLDLMLPGMSGTD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ + V+ +T ++KP+ R+L+ + +L
Sbjct: 63 VCRRLRQV-STVPVIMVTARDTELDKVLGLELGADDYVTKPYSSRELIARIRAVLRR 118
>gi|256374761|ref|YP_003098421.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255919064|gb|ACU34575.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 228
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V +G A + V + ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLQFNGYQVDLAGDGQQALESVLSQRPDAMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ RR DL ++ +T AV+ L KPF
Sbjct: 62 VCRRLRSTGDDLPILVLTARDAVSDRVSGLDAGADDYLPKPF 103
>gi|254382225|ref|ZP_04997586.1| two-component system response regulator [Streptomyces sp. Mg1]
gi|194341131|gb|EDX22097.1| two-component system response regulator [Streptomyces sp. Mg1]
Length = 227
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R + L + G+EV + G + L+L D+++P ++G++
Sbjct: 3 RVLLIEDDPSIREGVGLGLRRRGHEVSAAETGEDGLALMASFRPELVLLDLMLPGINGVQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ +T + KP + V +L
Sbjct: 63 VCRRIRE-SSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEVIEARVKAVLRR 118
>gi|169826231|ref|YP_001696389.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
gi|168990719|gb|ACA38259.1| DNA-binding response regulator [Lysinibacillus sphaericus C3-41]
Length = 223
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + + L + GY+V+ N A + L + D++MP MDG
Sbjct: 2 RILVVDDDVHILQLVNIYLTREGYQVLRAENAQQALALLNGNLPDLAVVDVMMPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L T+ D+ V+ +T + + + KPF ++L+ + +L
Sbjct: 62 LTETLTQDY-DIPVLLLTAKGELEDKERGFLAGSDDYVVKPFEPKELLFRIAAILRR 117
>gi|170684107|ref|YP_001746856.1| DNA-binding response regulator CreB [Escherichia coli SMS-3-5]
gi|218703147|ref|YP_002410776.1| DNA-binding response regulator CreB [Escherichia coli IAI39]
gi|170521825|gb|ACB20003.1| transcriptional regulatory protein CreB [Escherichia coli SMS-3-5]
gi|218373133|emb|CAR21027.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli IAI39]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|158337175|ref|YP_001518350.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158307416|gb|ABW29033.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 253
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + + L AGY+V +G + L++ D+++P++D
Sbjct: 1 MKTRILVIDDDPAIAELVAINLEMAGYDVAQATDGIKGQALAVQLLPDLIILDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + +R + D+ ++ +T + + L+KPF L +++ V LL
Sbjct: 61 GFTICQRLRRDQRTADIPILMLTALSQTQDKVEGFNAGADDYLTKPFELEEMLARVRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|330997905|ref|ZP_08321739.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329569509|gb|EGG51279.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 1370
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED D+ R FL++ L K + VV +G R E L+++D++MP MDG+
Sbjct: 1112 KKILVVEDHDEFRHFLVEQLQK-DFCVVEARDGVEGELAARTELPDLIVSDLMMPRMDGM 1170
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + + +T ++ +SKPF+ L + +L+
Sbjct: 1171 ELCRRLKGDIQTSHIPFILLTARSSDDSRIGGYEAGADSYISKPFNWEMLQVRIRQLIEQ 1230
Query: 121 K 121
K
Sbjct: 1231 K 1231
>gi|238921581|ref|YP_002935096.1| hypothetical protein NT01EI_3734 [Edwardsiella ictaluri 93-146]
gi|238871150|gb|ACR70861.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 243
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++IL+ EDD + L L GY V +G V + + L+ D+++P +
Sbjct: 7 MTVKRILVVEDDTLIAELLTLHLCDEGYRVTHAADGDRGMALVEQGGWDALILDLMLPGV 66
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ RR + ++ + ++ L+KPF + +LV V L
Sbjct: 67 DGLDICRRVRTMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMIELVARVKALFR 126
Query: 120 IK 121
+
Sbjct: 127 RQ 128
>gi|238786192|ref|ZP_04630142.1| Transcriptional regulatory protein creB [Yersinia bercovieri ATCC
43970]
gi|238712909|gb|EEQ04971.1| Transcriptional regulatory protein creB [Yersinia bercovieri ATCC
43970]
Length = 229
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L ED+ + LI L G+ + + G A + P +L + D+ +P+++G EL
Sbjct: 2 IWLVEDEPSIADTLIYTLESEGFTLRWFDRGEPALAALANGPPALAIVDVGLPDINGFEL 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR P+L V+F+T + ++KPF R++ V +L
Sbjct: 62 CRRLLVQMPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRR 117
>gi|238763220|ref|ZP_04624185.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
33638]
gi|238698493|gb|EEP91245.1| Transcriptional regulatory protein creB [Yersinia kristensenii ATCC
33638]
Length = 232
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L ED+ + LI L G+ + + G A + + P +L + D+ +P+++
Sbjct: 1 MKPLIWLVEDEPSIADTLIYTLESEGFTLRWFDRGQPALAALADGPPALAIVDVGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L RR L P+L V+F+T + ++KPF R++ V +L
Sbjct: 61 GFDLCRRILALVPELPVVFLTARSEELDRIVGLEIGADDYIAKPFSPREVSARVRTVLRR 120
>gi|210631674|ref|ZP_03296965.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
gi|210159962|gb|EEA90933.1| hypothetical protein COLSTE_00850 [Collinsella stercoris DSM 13279]
Length = 191
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ IL+ EDD +R + ALG GY+V G A + L++ D+ +
Sbjct: 1 MSEATRPHILVVEDDPAVRNLVTTALGLHGYDVEKAETGELAIMEAASRNPDLIMLDLGL 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P++DG+E+ + + ++ I+ + + L+KPF + +L+ V
Sbjct: 61 PDIDGVEVIAKIRS-WSAVPIIVISARIEDSDKIGALDAGADDYLTKPFSVEELLARVRA 119
Query: 117 LLTI 120
L
Sbjct: 120 SLRR 123
>gi|170759704|ref|YP_001785583.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
gi|169406693|gb|ACA55104.1| regulatory protein VanR [Clostridium botulinum A3 str. Loch Maree]
Length = 228
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD+D+R L L YE++ NGA A ++ ++ L++ D+++P++DG+
Sbjct: 2 EKILIIEDDEDIRDILKLYLEGQSYEILEAENGAEATKQLVKQ-PDLVILDLMLPDIDGL 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ IT A + ++KPF+ ++V V L
Sbjct: 61 SICKSIRKKYYY-PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRR 117
>gi|163839170|ref|YP_001623575.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
gi|162952646|gb|ABY22161.1| two-component response regulator [Renibacterium salmoninarum ATCC
33209]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ L L K G+EV +NG A + L+L D+ +P
Sbjct: 1 MS-RILIVEDEESFSDPLSYLLAKEGFEVEVVDNGIDAITEFDRVGADLVLLDLQLPGQS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ V+ +T + ++KP+ R+LV V +L
Sbjct: 60 GTEVCRQLRAR-SSAPVIMLTAKDSEIDKVVGLELGADDYVTKPYSSRELVARVRAVLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
gi|151280902|gb|ABR89312.1| heavy metal response regulator [Janthinobacterium sp. Marseille]
Length = 223
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ +L K L +AG+ V +GA +E + L++ D+++P +DG +
Sbjct: 2 KILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ D V+F+T V L KPF +L+ V LL
Sbjct: 62 LLRELRKVR-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRR 117
>gi|21225798|ref|NP_631577.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|256783167|ref|ZP_05521598.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289767048|ref|ZP_06526426.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|7799269|emb|CAB90891.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|289697247|gb|EFD64676.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++R + AL + G+EV +G + + L+L D+++P M G+E
Sbjct: 3 RVLLIEDDPAVQRGVSLALKRRGHEVAVAGSGETGLLTLERHRPDLVLLDLMLPNMSGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ ++ + KP L + +L
Sbjct: 63 VCRRIRE-SKRIPIIILSARGDEIDMVVGLEAGADDYIVKPAGAELLEARIRAVLRR 118
>gi|317503269|ref|ZP_07961324.1| DNA-binding response regulator [Prevotella salivae DSM 15606]
gi|315665626|gb|EFV05238.1| DNA-binding response regulator [Prevotella salivae DSM 15606]
Length = 232
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L GY C +G Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYAATLCPDGEVGYREFLKTKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANTEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|315646922|ref|ZP_07900037.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277852|gb|EFU41176.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + + G+ C+ G E +SL++ D+ +P M+
Sbjct: 1 MTTRILIIEDETTIAQLERDYFELNGFFADLCHTGNEGLHLALNEDYSLIVVDLQLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + + ++ ++ ++ + ++KPF +LV L
Sbjct: 61 GFELCRQIRK-NKEVPILIVSAKNEEIDKIRAFNLGADDYITKPFSPSELVARAKAHLMR 119
>gi|306820883|ref|ZP_07454503.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304550997|gb|EFM38968.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 233
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPE-MDG 61
KIL+ ED+ +R F+ L + GY+V+ +G A + + + ++ + D+++P +DG
Sbjct: 2 KILVLEDEFSIRSFVTLNLKREGYDVIEAGSGEEAIELYDKNQDINIAVLDVMLPGSIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ +T ++KPF ++L+ + L+
Sbjct: 62 FDVLKHIRTRSQNIGIIMLTARTNEEDKVLGLEYGADDYINKPFSPKELIARIRALIRR 120
>gi|238762436|ref|ZP_04623407.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Yersinia kristensenii
ATCC 33638]
gi|238699421|gb|EEP92167.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Yersinia kristensenii
ATCC 33638]
Length = 235
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +L+ +DD+++R L + KA + V+S +G +++E L++ D+++P
Sbjct: 1 MSPHTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGD 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L R+A ++ + ++ +T + + L+KPF R+L+ V LL
Sbjct: 61 DGFTLCRKARQV-SAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|218676439|ref|YP_002395258.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32]
gi|218324707|emb|CAV26330.1| putative transcriptional regulator CpxR [Vibrio splendidus LGP32]
Length = 221
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P +
Sbjct: 1 MS-RVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPVDLVLLDVMLPNLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ARR + ++ +T A D + ++KPF++ +L+ + +L
Sbjct: 60 GIQVARRICQRFA-TPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118
>gi|239918670|ref|YP_002958228.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|281415113|ref|ZP_06246855.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|239839877|gb|ACS31674.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
Length = 254
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L G+EV+ ++GA+A + L + D+++P+MDG++
Sbjct: 32 RVLVVDDEPMIADLLSMGFTLCGWEVIVAHDGATAVELGTAGRPDLAILDVMLPDMDGLD 91
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ MF+T A A ++KPF + +++ +RL+
Sbjct: 92 VLERLRAHWSEMPAMFLTAKDATEDRVAGLAAGGDDYVTKPFSMEEVLIRAHRLVQR 148
>gi|162448476|ref|YP_001610843.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Sorangium cellulosum
'So ce 56']
gi|161159058|emb|CAN90363.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Sorangium cellulosum
'So ce 56']
Length = 1143
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLA+D+ DMR ++ + L + + V + +GA A R P +L+LTD++MP +DG
Sbjct: 648 RVLLADDNADMREYVGRVLRER-WTVEAVADGAEALASARRSPPALVLTDVMMPNLDGFG 706
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L R E + V+ ++ A + L KPF R+LV V L
Sbjct: 707 LLRALRADERTRAVPVVMLSARAGEESRVEGLEAGADDYLPKPFSARELVARVATHL 763
>gi|83716332|ref|YP_438576.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
gi|167576884|ref|ZP_02369758.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
TXDOH]
gi|167615059|ref|ZP_02383694.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
Bt4]
gi|257141635|ref|ZP_05589897.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
gi|83650157|gb|ABC34221.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
Length = 230
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L + L +AG+ +G S +++ E + L + D+++P DG
Sbjct: 2 KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V L+KPF +L+ V LL
Sbjct: 62 VVRELRRTHR-TPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117
>gi|303239890|ref|ZP_07326413.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302592600|gb|EFL62325.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 236
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++K I + ED+ ++ + L + GY+V ++G + + + L L DI++P +
Sbjct: 1 MSKKLIYVVEDEKHIQELIGFNLKENGYDVKCFDSGETMLSECQNMKPDLFLLDIMLPGI 60
Query: 60 DGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ RR E + ++ +T ++KPF +R+L+ + +
Sbjct: 61 DGLEVCRRIKESSSLKKIPIIMLTAKNDEFDKVLGLELGAEDYITKPFSVRELIARIKVI 120
Query: 118 LTIK 121
+
Sbjct: 121 FRRQ 124
>gi|295838626|ref|ZP_06825559.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
gi|295827102|gb|EFG65240.1| DNA-binding response regulator MtrA [Streptomyces sp. SPB74]
Length = 231
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G K+REE L++ D+++P +DG E+
Sbjct: 11 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLTKLREERPDLIVLDVMLPGIDGFEVC 70
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 71 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 124
>gi|260170975|ref|ZP_05757387.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one component system') [Bacteroides sp. D2]
Length = 1361
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED++++ + + L K Y V++ NG A + ++E ++++D++MPEMDG+E
Sbjct: 1110 RLLLVEDNEELLYLMRRILSKH-YYVLTAKNGIEALEVMKEYEADIIVSDVMMPEMDGLE 1168
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + ++ +T + + +SKPF L+ L ++ L K
Sbjct: 1169 LCRVVKGNLDTSHIPIILLTAKNSAEDRIECYNAGANAYISKPFELKVLEARIDNFLAEK 1228
>gi|251773294|gb|EES53844.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Leptospirillum ferrodiazotrophum]
Length = 473
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL ED+ +R L + GY+V + + +R P +LL DIVMP M
Sbjct: 1 MSSSILLVEDEPLIREAFALRLSERGYQVTTATSAEEGLVALRTSPPDILLLDIVMPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G++L R D D+ V+ +T V ++ ++K + +L V+ +
Sbjct: 61 GLDLLREIRASDLDIPVILLTARGTVKDAVEAMRLGAFDFVAKNIDMDELFLSVSNAVR 119
>gi|225570047|ref|ZP_03779072.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
15053]
gi|225161517|gb|EEG74136.1| hypothetical protein CLOHYLEM_06143 [Clostridium hylemonae DSM
15053]
Length = 240
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 1 MNQK-------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD 53
M ++ +L+ +DD ++ R L K L GY+V+ NG A D + + L++ D
Sbjct: 1 MKRRKTMEQYTVLVVDDDKEIVRSLGKLLELEGYKVLKAFNGMEALDMLVTDKVHLIILD 60
Query: 54 IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
++MPE++G+ + E + ++ V+ ++ + + ++KP++ +L+
Sbjct: 61 VMMPELNGLSALMKIREKN-NIPVIMLSAKTEESDKVIGLSMGADDYVTKPYNTAELMAR 119
Query: 114 VNRLLTI 120
V L
Sbjct: 120 VKSQLRR 126
>gi|206900228|ref|YP_002251690.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
gi|206739331|gb|ACI18389.1| response regulator ArlR [Dictyoglomus thermophilum H-6-12]
Length = 220
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + L L G+EV +G A + E +++ DI++P + G E
Sbjct: 2 KILVLEDDKKIAHLLELELTHEGHEVRVVGDGYDALIEAEEFKPDVVILDIMLPGLSGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A+R + PDL ++ +T V ++ + KPF + +L+ + + K
Sbjct: 62 VAKRLRDKYPDLGIIMLTALGDVKDKVEAFNLGADDYVVKPFSIEELLARIQAVARRK 119
>gi|189465898|ref|ZP_03014683.1| hypothetical protein BACINT_02261 [Bacteroides intestinalis DSM
17393]
gi|189434162|gb|EDV03147.1| hypothetical protein BACINT_02261 [Bacteroides intestinalis DSM
17393]
Length = 240
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED+ + + L + + + +G + +L+ D++MP M
Sbjct: 10 MDKIKVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRMFFDLRPDVLVADVMMPRM 69
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ R + D V+F+T +++ + L KPF +++L+ + L
Sbjct: 70 DGFEMVRHIRQTDKRTPVLFLTARSSINDVVEGFELGANDYLKKPFGMQELIVRIKAL 127
>gi|157148189|ref|YP_001455508.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
gi|157085394|gb|ABV15072.1| hypothetical protein CKO_04000 [Citrobacter koseri ATCC BAA-895]
Length = 224
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGQAADHLLHTETYALAVLDINMPGLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF + +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFEIEELDARLRALLRR 118
>gi|186474905|ref|YP_001856375.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
gi|184191364|gb|ACC69329.1| multi-sensor hybrid histidine kinase [Burkholderia phymatum STM815]
Length = 1631
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ D+R ++ + L AG++V +G A R L+++D++MP++DG
Sbjct: 644 KLLVVDDNADLRDYMRRILTAAGHQVYVAADGMEALAAARALQPELVVSDVMMPKLDGFG 703
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN-----R 116
L R D ++ V+ ++ A D L KPF R+L+ V
Sbjct: 704 LLRALRADDGLREMPVLLLSARAGEEAKVDGLESGADDYLIKPFAARELLARVAGNLQLA 763
Query: 117 LLTIK 121
L +
Sbjct: 764 RLRRE 768
Score = 104 bits (261), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-MD 60
+ IL+ EDD+D+R +++ L GY V+ + SA V P LL TD+VMP +
Sbjct: 1360 ETILVVEDDEDVRTTVVEMLSALGYRVLKAKDAQSALAIVESGVPIDLLFTDVVMPGSLR 1419
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
ELAR+A E P + V+F +G+ A+ + ++LSKP+ L ++ L
Sbjct: 1420 STELARKARERQPGIAVLFTSGYTDNAIVHAGRLDEGVELLSKPYSREALARKIEHAL 1477
Score = 86.0 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/114 (35%), Positives = 56/114 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL EDD+ +R + L G EV + A D + E+ F +LLTDI + G
Sbjct: 1514 NLRILFVEDDELVRVSTAELLRTFGVEVAEASGAVQALDLLHEKSFDVLLTDIGLAGASG 1573
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
I+LA AT + L+V+F+TG A A L KP+ DLVN +
Sbjct: 1574 IDLAIDATGRESRLRVIFVTGSDAALSPEQQLRLPGASQLRKPYDPLDLVNALR 1627
>gi|298206949|ref|YP_003715128.1| transcriptional regulatory protein [Croceibacter atlanticus
HTCC2559]
gi|83849583|gb|EAP87451.1| transcriptional regulatory protein [Croceibacter atlanticus
HTCC2559]
Length = 226
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ILL +D+ D+ + L GY V++ ++G A ++ L++ D++MPEMDG
Sbjct: 5 NITILLVDDEPDILEIVGYNLSSEGYNVITASDGKEAVKLAKKRKPQLIILDVMMPEMDG 64
Query: 62 IELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E + ++ D D + F T ++KP + LV++VN LL
Sbjct: 65 VEACEQIRKIPDLDTIITFFTARGEDYSMLAGFDAGADDYITKPIKPKVLVSKVNALLRR 124
>gi|116512403|ref|YP_809619.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris
SK11]
gi|116108057|gb|ABJ73197.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactococcus lactis subsp. cremoris SK11]
Length = 230
Score = 142 bits (360), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG
Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ARR + D ++ +T + ++KPF + +L+ V +
Sbjct: 63 FEVARRLRKE-KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121
>gi|328542823|ref|YP_004302932.1| transcription regulator protein [polymorphum gilvum SL003B-26A1]
gi|326412569|gb|ADZ69632.1| Putative transcription regulator protein [Polymorphum gilvum
SL003B-26A1]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L +GY V S N A A + F LL+ D++MP G++
Sbjct: 13 HLLLVDDDSRIRDLLSRVLRDSGYRVTSAANAAEARRCMAGLEFDLLILDVMMPGETGLD 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR + + ++ +T + A L+KPF R+L+ + +L
Sbjct: 73 LARTIRREN-TVPILMLTARSDAADRIAGLEVGADDYLAKPFEPRELMLRIAAILRR 128
>gi|300853883|ref|YP_003778867.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300433998|gb|ADK13765.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ ED+ +R FL + + V+ + G A +K R E + + D+++P MDG
Sbjct: 2 KKVLIVEDEASIRGFLKINFKRNKFIVIEASTGERALEKARVENPIVTILDVMLPGMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ P + ++ +T + + KPF+ ++L+ VN LL
Sbjct: 62 KTCEILRREFPKMGIIMLTARSQDTDKIMGFGFGADDYVIKPFNPQELIARVNALLRR 119
>gi|160901173|ref|YP_001566755.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160366757|gb|ABX38370.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 342
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AED+ ++ L L ++ V +G A + L+L D+ MP +DG ++
Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQV 175
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D V+ +T + KPF+ ++V V +L
Sbjct: 176 LSEIRRRG-DTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRR 230
>gi|114769510|ref|ZP_01447136.1| Response regulator [alpha proteobacterium HTCC2255]
gi|114550427|gb|EAU53308.1| Response regulator [alpha proteobacterium HTCC2255]
Length = 195
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ L L GY+V+ +G +E L+L D ++P + G+E+
Sbjct: 11 ILIVEDEPSQMELLSFNLNAEGYDVLKAEDGEKGLLLFKENNIDLVLLDWMLPNISGLEV 70
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ D ++ +T + KP+ +++L+ V + I+
Sbjct: 71 CRQMRRSKDSSDCHLIMLTARGEEEDKVRGLDMGADDYIVKPYSIKELLARVRSGIRIR 129
>gi|46397856|sp|Q01473|RCAC_FREDI RecName: Full=Protein rcaC
gi|387603|gb|AAA24892.1| putative [Fremyella diplosiphon Fd33]
Length = 651
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDDD + + L K L Y V +G + + L++ DI++P +DGI
Sbjct: 2 KILLVEDDDVLIKVLTKNLTTHHYIVDVVKDGEMGWTYGSTFEYDLIILDIMLPNLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + ++ +T + + KPF +L+ + LL
Sbjct: 62 LCKRFRAQGYTVPILLLTAQDNITAKVQGLDAGADDYVVKPFDPIELIARIRALLRR 118
Score = 104 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ +DD D R L L G++V + + + ++ L+ D+ MP+++G E
Sbjct: 527 KVMILDDDQDWLRTLPTLLKPWGFKVTTLADPQQFWTVLQAVTPDALVLDVNMPQINGFE 586
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + L V+F++ + A L KP +L N + R L
Sbjct: 587 LCQLLRSDPHWQRLPVLFLSVLTDPTTQNQAFAVGGDDYLCKPVKGVELANRILRRLQR 645
Score = 37.4 bits (87), Expect = 0.64, Method: Composition-based stats.
Identities = 20/133 (15%), Positives = 39/133 (29%), Gaps = 26/133 (19%)
Query: 10 DDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--------FSLLLTDIVMPEM-D 60
D++ + + A G + A + EP ++L +P M
Sbjct: 391 DNEFNQSIVAVA-ASRGIRIQIAPTPDIAPAMLTNEPVLDGFGEDPDVILM--RLPSMPS 447
Query: 61 GIELARR--------------ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106
E+ + E P L ++ I ++ ++ L P
Sbjct: 448 RAEVIEQPNSELSNIWKTLQTFAERYPKLPIVVIGDRGEMSDRLEAMRRGGKLFLVTPTP 507
Query: 107 LRDLVNEVNRLLT 119
+V+ V LL
Sbjct: 508 PEQIVDTVVNLLR 520
>gi|313147451|ref|ZP_07809644.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
gi|313136218|gb|EFR53578.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ ED+ + L + L ++GY+V +G R F ++++D+++P+M G EL
Sbjct: 1 MVVEDEQRVAELLKRGLEESGYQVELAYDGVWGLRLFRAGEFQMVISDVILPKMSGFELC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T D + KPF R+L + LL +
Sbjct: 61 KEIRNINNRVPVLMLTALGTTDDKLDGFDAGADDYMVKPFDFRELNARIKVLLKRR 116
>gi|302035689|ref|YP_003796011.1| heavy metal response regulator [Candidatus Nitrospira defluvii]
gi|300603753|emb|CBK40085.1| Heavy metal response regulator [Candidatus Nitrospira defluvii]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + F+ +AL + Y V C +GA D + L++ D+++P + G+E
Sbjct: 2 RVLVVEDETKVGSFIKRALEEESYAVDLCEDGAQGLDMALSGSYDLIMIDLMLPSLPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + V L+KPF + +L+ V LL
Sbjct: 62 VLTRLRKEKIQTPVLILTAQSKVDQRVKGLDAGADDYLTKPFAIDELLARVRALLRR 118
>gi|298387957|ref|ZP_06997506.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298259364|gb|EFI02239.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1345
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +L + V+ NG +A + + +E ++++D++MPEM+G+E
Sbjct: 1079 TVLLVEDNVELLNLTRDSLVAW-FRVLKAPNGRAALEILEQESVDVIVSDVMMPEMNGLE 1137
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1138 LCSKVKSEIDYSHIPVILLTAKTTLESKVEGLECGADVYIEKPFSIKQLHKQIENLLRLR 1197
>gi|302554102|ref|ZP_07306444.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302471720|gb|EFL34813.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 246
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D LL+ DI++P DG+
Sbjct: 20 RRVLVVEDDATIVDAIATRLRAEGFLVQTAGDGPAAVDTAEAWQPDLLILDIMLPGFDGL 79
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + VM +T ++KPF +R+L V+ LL
Sbjct: 80 EVCRRVQAARP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 136
>gi|302530375|ref|ZP_07282717.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302439270|gb|EFL11086.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 51/102 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V ++GA A + + ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLEFNGYTVELASDGAQALETILANRPDAMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ARR DL ++ +T V+ L KPF
Sbjct: 62 VARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPF 103
>gi|253568779|ref|ZP_04846189.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251840798|gb|EES68879.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1345
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +L + V+ NG +A + + +E ++++D++MPEM+G+E
Sbjct: 1079 TVLLVEDNVELLNLTRDSLVAW-FRVLKAPNGRAALEILEQESVDVIVSDVMMPEMNGLE 1137
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1138 LCSKVKSEIDYSHIPVILLTAKTTLESKVEGLECGADVYIEKPFSIKQLHKQIENLLRLR 1197
>gi|226226840|ref|YP_002760946.1| OmpR family two-component response regulator [Gemmatimonas
aurantiaca T-27]
gi|226090031|dbj|BAH38476.1| OmpR family two-component response regulator [Gemmatimonas
aurantiaca T-27]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 47/116 (40%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L GY+V G + +L++ D+++P++DG +
Sbjct: 14 ILVVEDNALLAAGVRSNLEFEGYQVTVAATGREGLRLAKSRAHALIVLDLMLPDIDGFRV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E + V+ +T ++KPF L + + V LL
Sbjct: 74 LRELREHGVETPVLILTAMGDETDKVRGFRFGADDYVTKPFGLMEFLARVQALLRR 129
>gi|161620540|ref|YP_001594426.1| transcriptional regulator ycf27 [Brucella canis ATCC 23365]
gi|260568223|ref|ZP_05838692.1| response regulator receiver [Brucella suis bv. 4 str. 40]
gi|161337351|gb|ABX63655.1| Probable transcriptional regulator ycf27 [Brucella canis ATCC
23365]
gi|260154888|gb|EEW89969.1| response regulator receiver [Brucella suis bv. 4 str. 40]
Length = 234
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD D+R L + G V NG D + P L++ D+++P
Sbjct: 1 MKEDAHILIVDDDKDIRE----FLKRRGMHVSIACNGDEMLDVLSRTPIDLVILDVMLPG 56
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + ++ +T A A ++KPF R+L+ + +L
Sbjct: 57 KSGIEICQDVR-RTSRVPIIMLTAIADAADKILGLEIGADDYIAKPFDPRELLARIRAVL 115
Query: 119 TI 120
Sbjct: 116 RR 117
>gi|160900345|ref|YP_001565927.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160365929|gb|ABX37542.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L G++ V +G +A ++ ++L D ++P G+ L
Sbjct: 7 VLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPGASGLSL 66
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
AR+ + ++ +T ++KPF ++L+ + +L +
Sbjct: 67 ARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRR 125
>gi|158320237|ref|YP_001512744.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140436|gb|ABW18748.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++RR + L + Y V+S +G A + + L+++DI+MP MDG E
Sbjct: 4 ILVIEDDKNLRRLMEAFLKRENYNVLSAKDGLEALNVLDSFHVDLIISDIMMPHMDGYEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ ++ +T + + + KP +L +++ V LL N
Sbjct: 64 TEQLRKSNINVPILMVTAKETIEDKKRGFSVGTDDYMVKPINLDEMLLRVAALLRRSN 121
>gi|83594261|ref|YP_428013.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83577175|gb|ABC23726.1| two component transcriptional regulator, winged helix family
[Rhodospirillum rubrum ATCC 11170]
Length = 250
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ L L +AG VVS +G A D LLL D+ MP MDG +
Sbjct: 23 ILVVEDEPDIADILRAYLERAGMRVVSARDGRRALDLHASLNPDLLLLDVQMPVMDGWRV 82
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D V+ +T + KPF+ ++V V +L
Sbjct: 83 LSELRHRG-DTPVIMLTALDQDIDKLMGLRIGADDYVVKPFNPAEVVARVRAVLRR 137
>gi|29348874|ref|NP_812377.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29340780|gb|AAO78571.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1345
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +L + V+ NG +A + + +E ++++D++MPEM+G+E
Sbjct: 1079 TVLLVEDNVELLNLTRDSLVAW-FRVLKAPNGRAALEILEQESVDVIVSDVMMPEMNGLE 1137
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF ++ L ++ LL ++
Sbjct: 1138 LCSKVKSEIDYSHIPVILLTAKTTLESKVEGLECGADVYIEKPFSIKQLHKQIENLLRLR 1197
>gi|186682033|ref|YP_001865229.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186464485|gb|ACC80286.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 421
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L AL G+ +G +A + L+L D+ MP +DG E
Sbjct: 10 ILIVDDNPTNLSVLCAALNSEGFRFRVAVDGETAIAQAERNQPELILLDVQMPGIDGFET 69
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR ++ ++F T A + + KPF +++ V L +K
Sbjct: 70 CRRLKANPATQNIPIIFTTALADTESKTKGFSLGAVDYIPKPFAQEEVIARVRVHLQLK 128
>gi|330977884|gb|EGH77787.1| two component transcriptional regulator [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + +AL + GY V +G+SA + E F L + D+ +P + G E
Sbjct: 2 RLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L VM +T A L KPF + +L + LL
Sbjct: 62 VLRRLRHSGSTLPVMILTARDATEDRIIGLDSGADDYLVKPFDVSELKARLRALLRR 118
>gi|325264454|ref|ZP_08131184.1| DNA-binding response regulator DltR [Clostridium sp. D5]
gi|324030116|gb|EGB91401.1| DNA-binding response regulator DltR [Clostridium sp. D5]
Length = 227
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L AED+ M ++ L Y V + +G +A + R + ++ DI+MP+M
Sbjct: 2 MMMKLLFAEDEISMSEAVVDILTYHKYIVDAVYDGEAALEYARSAQYDGIILDIMMPKMS 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ ++ +T A V L KPF + +L+ + +L
Sbjct: 62 GLEVLGCLRREGYRTPILLLTAKAEVEDRIQGLDLGADDYLPKPFAMGELLARIRAMLRR 121
Query: 121 K 121
+
Sbjct: 122 R 122
>gi|290957941|ref|YP_003489123.1| two component system response regulator [Streptomyces scabiei
87.22]
gi|260647467|emb|CBG70572.1| two component system response regulator [Streptomyces scabiei
87.22]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|257885040|ref|ZP_05664693.1| response regulator [Enterococcus faecium 1,231,501]
gi|257820892|gb|EEV48026.1| response regulator [Enterococcus faecium 1,231,501]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L GYEV G A D + E F L + D+++P++D
Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDCIERESFDLAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T ++KPF+ ++V + L
Sbjct: 61 GFKIVQKIRENH-FFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRR 119
>gi|296134555|ref|YP_003641797.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thiomonas intermedia K12]
gi|295794677|gb|ADG29467.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thiomonas intermedia K12]
Length = 456
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD D+R+ L L AGY V+ +GA A + S ++TD+ M MD
Sbjct: 1 MPATVLLVDDDPDLRQLLAIRLRSAGYAPVTAASGAEALGSLAASRPSAVITDLRMEGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L DP L V+ +T + D+ L+KPF R+L+ + R + +
Sbjct: 61 GLSLFEHIRAQDPSLPVIILTAHGTIPDAVDATQRGVFGFLTKPFEARELLALLERAIAL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|94970017|ref|YP_592065.1| two component transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94552067|gb|ABF41991.1| two component transcriptional regulator, winged helix family
[Candidatus Koribacter versatilis Ellin345]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q + + EDD D+ R + L AG+ V + G + + P +L L DI++P D
Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R+ V+F+T + A ++KPF R+L+ + +L
Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|91788128|ref|YP_549080.1| two component transcriptional regulator [Polaromonas sp. JS666]
gi|91697353|gb|ABE44182.1| two component transcriptional regulator, winged helix family
[Polaromonas sp. JS666]
Length = 243
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +IL+ ED+ + + L G+E V + +A ++ +L D ++P
Sbjct: 1 MKHQARILIVEDEPAIAELIAVNLRHGGFEPVVVQDSVAAQRELDAVLPDAILLDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+ LAR + + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLALARHWRKQVRTKAIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|15804969|ref|NP_291011.1| DNA-binding response regulator CreB [Escherichia coli O157:H7
EDL933]
gi|15834610|ref|NP_313383.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
Sakai]
gi|168750963|ref|ZP_02775985.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4113]
gi|168756818|ref|ZP_02781825.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4401]
gi|168762752|ref|ZP_02787759.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4501]
gi|168766682|ref|ZP_02791689.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4486]
gi|168776622|ref|ZP_02801629.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4196]
gi|168781690|ref|ZP_02806697.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4076]
gi|168785043|ref|ZP_02810050.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC869]
gi|168797973|ref|ZP_02822980.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC508]
gi|195937669|ref|ZP_03083051.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
EC4024]
gi|208809655|ref|ZP_03251992.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4206]
gi|208812237|ref|ZP_03253566.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4045]
gi|208820456|ref|ZP_03260776.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4042]
gi|209399995|ref|YP_002273919.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4115]
gi|217325103|ref|ZP_03441187.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. TW14588]
gi|254796394|ref|YP_003081231.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
TW14359]
gi|261226756|ref|ZP_05941037.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli O157:H7 str. FRIK2000]
gi|261255160|ref|ZP_05947693.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli O157:H7 str. FRIK966]
gi|12519430|gb|AAG59578.1|AE005671_2 catabolic regulation response regulator [Escherichia coli O157:H7
str. EDL933]
gi|13364834|dbj|BAB38779.1| catabolic regulation response regulator [Escherichia coli O157:H7
str. Sakai]
gi|187768032|gb|EDU31876.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4196]
gi|188014947|gb|EDU53069.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4113]
gi|189000768|gb|EDU69754.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4076]
gi|189356081|gb|EDU74500.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4401]
gi|189364332|gb|EDU82751.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4486]
gi|189366953|gb|EDU85369.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4501]
gi|189374813|gb|EDU93229.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC869]
gi|189379581|gb|EDU97997.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC508]
gi|208729456|gb|EDZ79057.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4206]
gi|208733514|gb|EDZ82201.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4045]
gi|208740579|gb|EDZ88261.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4042]
gi|209161395|gb|ACI38828.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. EC4115]
gi|209748778|gb|ACI72696.1| catabolic regulation response regulator [Escherichia coli]
gi|209748780|gb|ACI72697.1| catabolic regulation response regulator [Escherichia coli]
gi|209748782|gb|ACI72698.1| catabolic regulation response regulator [Escherichia coli]
gi|209748786|gb|ACI72700.1| catabolic regulation response regulator [Escherichia coli]
gi|217321324|gb|EEC29748.1| transcriptional regulatory protein CreB [Escherichia coli O157:H7
str. TW14588]
gi|254595794|gb|ACT75155.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli O157:H7 str. TW14359]
gi|320190484|gb|EFW65134.1| Two-component response regulator CreB [Escherichia coli O157:H7
str. EC1212]
gi|320643909|gb|EFX13029.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
493-89]
gi|320649067|gb|EFX17649.1| DNA-binding response regulator CreB [Escherichia coli O157:H- str.
H 2687]
gi|320654584|gb|EFX22596.1| DNA-binding response regulator CreB [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320665393|gb|EFX32477.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
LSU-61]
gi|326345287|gb|EGD69030.1| Two-component response regulator CreB [Escherichia coli O157:H7
str. 1125]
gi|326346859|gb|EGD70593.1| Two-component response regulator CreB [Escherichia coli O157:H7
str. 1044]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|317475905|ref|ZP_07935161.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316907938|gb|EFV29636.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1362
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+D+++ +L L Y+V +C+NG AYD + + L+++D++MPEMDG+
Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLVISDVMMPEMDGLT 1169
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + + V+ +T + + + KPF+ L + L+ +
Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLINNR 1229
>gi|311893560|dbj|BAJ25968.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 249
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD+ +RR + AL + GY V + +G S + RE LL+ D+++P +DGI
Sbjct: 22 RVLLVEDDETIRRSIALALERYGYRVATAPDGLSGLEAFREGGHDLLILDVMLPHLDGIG 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E ++ ++ + KP LV + LL
Sbjct: 82 LCRRIRE-SSQAPILMMSARGHSLDVVSGLEAGADDYVVKPVDTTVLVARIRSLLRR 137
>gi|303249046|ref|ZP_07335290.1| two component transcriptional regulator, winged helix family
[Desulfovibrio fructosovorans JJ]
gi|302489569|gb|EFL49510.1| two component transcriptional regulator, winged helix family
[Desulfovibrio fructosovorans JJ]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + F+I L ++G+ V NG EP+++ + D+++P +DG++
Sbjct: 2 RILLVEDDEKIASFIIGGLRQSGFAVDHAANGLDGLHLAATEPYAVAVIDVMLPGLDGLK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ ++ +V + +SKPF +L+ V L+ +
Sbjct: 62 VIEELRRRKVNTPIIILSAKRSVEDRVRGLETGSDDYISKPFSFSELLARVQALIRRSS 120
>gi|295702415|ref|YP_003595490.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294800074|gb|ADF37140.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + +++ L + GYEV + G + + L+ DI++P M G++
Sbjct: 2 RVLVVEDDASLLHGIVEGLKEEGYEVDCASEGDEGLFLAEQNIYDALILDIMLPGMTGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ + KV+F+T +V L KPF + +L + +L
Sbjct: 62 ILKKLRKQKVLTKVIFLTAKDSVEDRVKGLDYGADDYLVKPFAMAELFARLRVMLR 117
>gi|281603735|gb|ADA76719.1| Catabolic regulation response regulator [Shigella flexneri 2002017]
gi|332749163|gb|EGJ79586.1| transcriptional regulatory protein creB [Shigella flexneri K-671]
gi|333022265|gb|EGK41503.1| transcriptional regulatory protein creB [Shigella flexneri K-304]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALYPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|269963823|ref|ZP_06178137.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269831441|gb|EEZ85586.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 57/120 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL +D+ ++ + +++ L G NG A +R + F L++ D+ +P++ G
Sbjct: 6 KHVLLVDDNIELAKTIMEYLEMHGIHCDHAANGTMALKLLRSDEFDLVILDVNLPQLSGY 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ DL V+ +T + ++ + + KPF L +L+ V LL ++
Sbjct: 66 KICETLRRDGIDLPVLILTAKSELSDKLKGFSAGADDYMVKPFALEELLARVLALLKRRS 125
>gi|48374222|gb|AAT41921.1| putative chemotaxis protein [Fremyella diplosiphon Fd33]
Length = 121
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED R + L +G V ++G A + ++ P L++ DIVMP M+
Sbjct: 1 MS-TVLIVEDSIAQREMITDLLKASGLTVTHASDGVEALEAIQSTPPDLVVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR ++ V+ + ++KPF +LV V +LL
Sbjct: 60 GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|86609393|ref|YP_478155.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557935|gb|ABD02892.1| response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 121
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED R + K L + G+EV++ +G A + V++ L++ DIVMP M+
Sbjct: 1 MS-RVLVVEDSQSQREMISKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R L ++ + ++KPF ++LV + +LL
Sbjct: 60 GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGIRQGADAYIAKPFQPQELVGTIKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|24115626|ref|NP_710136.1| DNA-binding response regulator CreB [Shigella flexneri 2a str. 301]
gi|30065634|ref|NP_839805.1| DNA-binding response regulator CreB [Shigella flexneri 2a str.
2457T]
gi|110808186|ref|YP_691706.1| DNA-binding response regulator CreB [Shigella flexneri 5 str. 8401]
gi|24054966|gb|AAN45843.1| catabolic regulation response regulator [Shigella flexneri 2a str.
301]
gi|30043898|gb|AAP19617.1| catabolic regulation response regulator [Shigella flexneri 2a str.
2457T]
gi|110617734|gb|ABF06401.1| catabolic regulation response regulator [Shigella flexneri 5 str.
8401]
gi|313646243|gb|EFS10705.1| transcriptional regulatory protein creB [Shigella flexneri 2a str.
2457T]
gi|332748911|gb|EGJ79335.1| transcriptional regulatory protein creB [Shigella flexneri 4343-70]
gi|332749686|gb|EGJ80102.1| transcriptional regulatory protein creB [Shigella flexneri 2747-71]
gi|332768786|gb|EGJ98965.1| response regulator [Shigella flexneri 2930-71]
gi|333009377|gb|EGK28833.1| transcriptional regulatory protein creB [Shigella flexneri K-218]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|116513940|ref|YP_812846.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093255|gb|ABJ58408.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 222
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRSTGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLARLR 113
>gi|330998135|ref|ZP_08321963.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
gi|329569224|gb|EGG51015.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paraprevotella xylaniphila YIT 11841]
Length = 865
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+AED++ R F+ L + + V++ +G RE L+++D++MP MDG
Sbjct: 610 TVLVAEDNEQFRTFMKDLLRQE-FTVLTAADGQEGLAMAREYGPDLIISDVMMPHMDGYA 668
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + ++ +T + + ++KPF + L + + +LL +
Sbjct: 669 FCRAVKDDVQCCHIPLILLTAKNSSESRSGAYEAGADSFIAKPFDIDVLHSRIRQLLEQR 728
>gi|322806627|emb|CBZ04196.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
Length = 235
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY+ +G A +K + E + +++ D++MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGENYHMVIMDVMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +LV V +
Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELVARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|320198931|gb|EFW73529.1| Nitrogen regulation protein NR(I) [Escherichia coli EC4100B]
Length = 461
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|300857935|ref|YP_003782918.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|300685389|gb|ADK28311.1| two-component system transcriptional regulatory protein
[Corynebacterium pseudotuberculosis FRC41]
gi|302330215|gb|ADL20409.1| Putative sensor kinase [Corynebacterium pseudotuberculosis 1002]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ +DD + L L G+ V+ +GA A + E L+L D+++P M+
Sbjct: 1 MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
GI++ R + + + ++ +T ++KPF ++L+
Sbjct: 61 GIDICRLIRQ-NSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 110
>gi|237736000|ref|ZP_04566481.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
gi|229421908|gb|EEO36955.1| two-component system response regulator [Fusobacterium mortiferum
ATCC 9817]
Length = 243
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +D++ + L L +GY+ + + G + + + L+L D+++PE+D
Sbjct: 1 MKKKILVIDDEEHILELLKINLEFSGYDTYAYDTGKDVLEIIEKTNPDLILLDLMLPEID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ +R +K++ ++ + ++KPF LR+L+ + +
Sbjct: 61 GIEICKRIRRNPKFNKIKLLILSAKSDEIDKILCLEIGADDYITKPFSLRELLARIKAIF 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|281421933|ref|ZP_06252932.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
DSM 18205]
gi|281403987|gb|EFB34667.1| phosphate regulon transcriptional regulator PhoB [Prevotella copri
DSM 18205]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ D+ L L GYEV + N+ A + F LLL D++M M G
Sbjct: 6 KRILVVDDEQDLCEILKFNLETEGYEVETANSAEEALEM-DIASFDLLLLDVMMGGMSGF 64
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+LA++ + ++ ++F+T +SKPF +R+++ V +L
Sbjct: 65 QLAKQLKGNPMTANVPIIFLTARDTENDTVTGFNIGADDYISKPFSIREVMVRVRAVLRR 124
>gi|160884659|ref|ZP_02065662.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
gi|156109694|gb|EDO11439.1| hypothetical protein BACOVA_02648 [Bacteroides ovatus ATCC 8483]
Length = 1346
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++D R F+ +L Y V NG A++ ++EE L+++D++MP+MDG EL
Sbjct: 1100 LVVDDNEDFRIFMRYSLELQ-YRVKLAVNGNEAWEMMQEELPDLVISDVMMPQMDGNELC 1158
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + ++KPF++ LV + +L+ +
Sbjct: 1159 RLIKQDKRTAHIPVILLTARQNTEAKLEGLQTGADDYVTKPFNMTILVLRIRKLIEL 1215
>gi|68537004|ref|YP_251709.1| two-component system response regulator TcsR8 [Corynebacterium
jeikeium K411]
gi|260579348|ref|ZP_05847230.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
gi|68264603|emb|CAI38091.1| two-component system response regulator TcsR8 [Corynebacterium
jeikeium K411]
gi|258602477|gb|EEW15772.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L L K G+EV +G +A D E ++L D+++P M G E+
Sbjct: 4 VLIVEDEQSLAEPLAFLLKKEGFEVFMAPDGPTALDTFAAEDIDIILLDLMLPGMSGTEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CRQLRQ-TSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYFARELIARIRAVLRR 118
>gi|320353158|ref|YP_004194497.1| Fis family two component sigma54 specific transcriptional regulator
[Desulfobulbus propionicus DSM 2032]
gi|320121660|gb|ADW17206.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobulbus propionicus DSM 2032]
Length = 443
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 50/112 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ R L L K GY V NG A + +P L+L D MP+M+G E
Sbjct: 2 RILIVDDEPLQRDMLSGFLKKQGYTVHEAANGTEALSQFMRQPIDLVLLDHRMPDMNGDE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ R P +V+ IT + AV L KP L L+ ++
Sbjct: 62 VLARIKAQSPLARVIMITAYGAVDTAVRVMRLGADDFLEKPIDLEALLAKIR 113
>gi|318040594|ref|ZP_07972550.1| two component transcriptional regulator [Synechococcus sp. CB0101]
Length = 256
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDSDMRELVAGHLEHSGFDVQRAEDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T + L+KPF L +L+ + LL
Sbjct: 61 GLTLCQRLRRDERTTGIPILMLTALGSTKDKVSGFNSGADDYLAKPFDLEELLVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|296156999|ref|ZP_06839836.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
gi|295892885|gb|EFG72666.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. Ch1-1]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +L K L +AGY V +G + + E + LL+ D+++P DG
Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+F+T V L+KPF +LV V +L
Sbjct: 62 LLQNLRRTRS-TPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRR 117
>gi|294054856|ref|YP_003548514.1| response regulator receiver sensor signal transduction histidine
kinase [Coraliomargarita akajimensis DSM 45221]
gi|293614189|gb|ADE54344.1| response regulator receiver sensor signal transduction histidine
kinase [Coraliomargarita akajimensis DSM 45221]
Length = 371
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ +D + L + L + G EV+ NG V E L+L D++MPEMDG
Sbjct: 6 KPRILVVDDQPINIKLLQRKLERQGLEVLVAYNGRECLKVVEESKPDLILLDVMMPEMDG 65
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE + + +MFIT A+ + ++KP L + + V L
Sbjct: 66 IETCQHLKANPETETIPIMFITAKASKEGKLEGLDAGAVDYITKPIDLDETLARVRTQLR 125
Query: 120 IK 121
++
Sbjct: 126 LQ 127
>gi|291572104|dbj|BAI94376.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+QKIL+ +DD +R + + L + YEV S +G +A E L++ D+ +P+ G
Sbjct: 3 SQKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T A ++KPF L +L V +L +
Sbjct: 63 FALCQEMQSRTR-VFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121
>gi|291085390|ref|ZP_06352946.2| DNA-binding response regulator YycF [Citrobacter youngae ATCC
29220]
gi|291070837|gb|EFE08946.1| DNA-binding response regulator YycF [Citrobacter youngae ATCC
29220]
Length = 243
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 61/119 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KI L EDD+D+ L +L GYE++ +G A +++ + + ++ D+++P +DG+
Sbjct: 8 KKIFLVEDDNDIASLLQLSLKDEGYEIIHEADGTRALEQLEKHVWDAVILDLMLPGVDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR ++ L V+ I+ + L+KPF + +L+ V L +
Sbjct: 68 EICRRIRQMSFYLPVIIISARTSETHRVLGLEMGADDYLAKPFSVLELMARVKALFRRQ 126
>gi|304317062|ref|YP_003852207.1| transcriptional regulator [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778564|gb|ADL69123.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL +D++ + + L + GY V + NGA+A + + L++ D+++P + G E
Sbjct: 2 KILAIDDEEKILDVIKAYLEREGYSVFTETNGANAINTFKSLKPDLVILDLMLPGLSGEE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T + L+KPF R+L V +L
Sbjct: 62 ICSKIRAI-SKVPILMLTAKVEEDDKVYGFSIGADDYLTKPFSPRELTMRVKAILRR 117
>gi|254787304|ref|YP_003074733.1| RstA family transcriptional regulator [Teredinibacter turnerae
T7901]
gi|237683805|gb|ACR11069.1| transcriptional regulatory protein RstA [Teredinibacter turnerae
T7901]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + ++ L GY+V N G +A + +R + L+L DI++PE DG ++
Sbjct: 15 ILVVEDDTSLAEWISDYLIDNGYQVTVANRGDTAVELIRSDTPDLVLLDIMLPEKDGFQV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R A ++ +T + A ++KP R L+ + LL
Sbjct: 75 CREARAFYSK-PILMMTACSEDADEILGLELGANDYVNKPVKPRILLARIKALLRR 129
>gi|238751695|ref|ZP_04613184.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
43380]
gi|238710105|gb|EEQ02334.1| Transcriptional regulatory protein tctD [Yersinia rohdei ATCC
43380]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G++
Sbjct: 2 RLLLVEDHPELSHWLQKALTHAGFAVDVINDGLAADHLLQNENYALVVLDVALPRLNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + L V+ +T VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFELDELEARIRALLRR 118
>gi|154492762|ref|ZP_02032388.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
gi|154087067|gb|EDN86112.1| hypothetical protein PARMER_02401 [Parabacteroides merdae ATCC 43184]
Length = 1346
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLAED+ D+RR++ K L ++V+ NG A++K+ E L+++DI+MP+ DG++
Sbjct: 1092 TLLLAEDNPDVRRYICKHLEPY-FDVLEAENGVDAFNKIAETLPDLVVSDIMMPKKDGLQ 1150
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ IT + V + + KPF++ L+ + +L +
Sbjct: 1151 LCSEIKQDLRTGHIPVIIITAKSMVMHIKEGFQCGADDYIVKPFNMEVLLCRIRNILASR 1210
>gi|87198466|ref|YP_495723.1| two component transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87134147|gb|ABD24889.1| two component transcriptional regulator, winged helix family
[Novosphingobium aromaticivorans DSM 12444]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ +ILL +D+ +R L L + G+ V A A ++ E L+L DI+MP
Sbjct: 1 MNEAPIRILLVDDEPALREPLADYLVRQGFVVTQAGTAAEARSRLLETGCDLVLLDIMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R E L V+FIT + KPF R+LV + +
Sbjct: 61 GEDGLSLCRHLVE-SKRLPVIFITAKGESTDRIVGLEIGADDYVVKPFDPRELVARIRSV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|333011380|gb|EGK30794.1| transcriptional regulatory protein creB [Shigella flexneri K-272]
gi|333012275|gb|EGK31657.1| transcriptional regulatory protein creB [Shigella flexneri K-227]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|288802301|ref|ZP_06407741.1| DNA-binding response regulator RprY [Prevotella melaninogenica D18]
gi|288335268|gb|EFC73703.1| DNA-binding response regulator RprY [Prevotella melaninogenica D18]
Length = 235
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYRAFLKSKYDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|153870538|ref|ZP_01999919.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
sp. PS]
gi|152072999|gb|EDN70084.1| sensory box sensor histidine kinase/response regulator [Beggiatoa
sp. PS]
Length = 980
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
KI + +D+ + LI L Y + +NG A +V + ++L D++MP+M G
Sbjct: 725 KIFVVDDEPVNIQVLINHLTLQNYAISIASNGLEALAQVEKGYKPDIILLDVMMPKMTGY 784
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ E+ P +L ++ +T V+ + L+KP +L+ + L +
Sbjct: 785 EVCRKLREVFPVNELPIVMLTAKNQVSDLVEGLESGANDYLTKPISKHELIARLKMHLQL 844
>gi|302554205|ref|ZP_07306547.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
gi|302471823|gb|EFL34916.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces viridochromogenes DSM 40736]
Length = 219
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 48/116 (41%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ ED+ + L + L GY V ++G + E + L++ DI++P ++G +
Sbjct: 1 MIVEDEKRLALSLARGLTAEGYAVDVVHDGREGLHQASEGTYDLVILDIMLPGLNGYRVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ +T + L+KPF LV + LL +
Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRR 116
>gi|260172966|ref|ZP_05759378.1| ATP-binding region ATPase domain protein [Bacteroides sp. D2]
gi|315921245|ref|ZP_07917485.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313695120|gb|EFS31955.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1355
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDDDDMR++++ L + Y V +NG + E+ L+++D++MP MDG+E
Sbjct: 1107 RVLVVEDDDDMRQYIVSLLSQQ-YIVYEASNGKEGLKEAVEQIPDLIVSDVMMPVMDGLE 1165
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + + V+ +T A + + + KPF + L+ +++ L+ +
Sbjct: 1166 LCKAIKEEMITAHIPVVLLTAKALNEHIEEGYSVMADDYVLKPFAPKVLLAKLDSLIKNR 1225
Query: 122 N 122
N
Sbjct: 1226 N 1226
>gi|239930478|ref|ZP_04687431.1| response regulator [Streptomyces ghanaensis ATCC 14672]
gi|291438839|ref|ZP_06578229.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291341734|gb|EFE68690.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|229014033|ref|ZP_04171157.1| Two-component response regulator [Bacillus mycoides DSM 2048]
gi|228747289|gb|EEL97168.1| Two-component response regulator [Bacillus mycoides DSM 2048]
Length = 242
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++R+ + L GYEV+ +G + V++ L++ DI+MP++DGI
Sbjct: 14 TILIVDDEKEIRKLIAIYLKNEGYEVLQAVDGEEGLEIVKKRDVHLIVLDIMMPKIDGIH 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E+ ++ ++ ++ ++KPF+ +L+ + L
Sbjct: 74 MCMKVREI-AEMPIIMLSAKTQDMDKILGLTTGADDYVAKPFNPLELIARIKSQLRR 129
>gi|255658536|ref|ZP_05403945.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
20544]
gi|260849340|gb|EEX69347.1| DNA-binding response regulator ArlR [Mitsuokella multacida DSM
20544]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +I + ED+ + RFL L G+E NG AY+++ + F L+L D+++P
Sbjct: 1 MDKPVRIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ + +R E+ L ++ +T V ++KPF + +L+ + L
Sbjct: 61 MDGMTICKRVREV-SSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNAL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|148556346|ref|YP_001263928.1| two component transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148501536|gb|ABQ69790.1| two component transcriptional regulator, winged helix family
[Sphingomonas wittichii RW1]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ R L L AGY V +G + E + ++ D+ +PE+DG+
Sbjct: 2 RVLIVEDEPNLGRQLRATLEGAGYAVDLATDGEDGHFLGSTESYDAIILDLGLPEVDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+ +T + + L+KPF +L+ + L+
Sbjct: 62 VLDRWRREGKDTPVLVLTARDSWSDKVAGLDAGADDYLAKPFQTEELIARLRALIRR 118
>gi|72382276|ref|YP_291631.1| two component transcriptional regulator [Prochlorococcus marinus
str. NATL2A]
gi|72002126|gb|AAZ57928.1| two component transcriptional regulator, winged helix family
[Prochlorococcus marinus str. NATL2A]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDIVMP 57
+++L+ EDD +R L +AL GY+V +C G A +V + L++ D+++P
Sbjct: 13 KRLLIVEDDKSIRETLNEALVAEGYQVEACKTGDEAEARVFSQFDTRKKIDLIVLDLMLP 72
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++GIEL RR + + ++ ++ + + L KPF L +L+ +
Sbjct: 73 NLNGIELCRRVRKNNIKTPILIVSAKDSESDRVLGLEVGADDYLIKPFGLNELIARCRAI 132
Query: 118 LTI 120
L
Sbjct: 133 LRR 135
>gi|17988267|ref|NP_540901.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
melitensis bv. 1 str. 16M]
gi|237816486|ref|ZP_04595479.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
abortus str. 2308 A]
gi|17984036|gb|AAL53165.1| phosphate regulon transcriptional regulatory protein phob [Brucella
melitensis bv. 1 str. 16M]
gi|237788553|gb|EEP62768.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
abortus str. 2308 A]
Length = 255
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 28 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 88 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147
Query: 117 LLTIKN 122
+L N
Sbjct: 148 MLRRAN 153
>gi|117926657|ref|YP_867274.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
gi|117610413|gb|ABK45868.1| two component transcriptional regulator, winged helix family
[Magnetococcus sp. MC-1]
Length = 241
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M Q +IL+ EDD+ R + L G+EV + +G + + P +++ D+++P
Sbjct: 1 MTQQDRILIVEDDEPTRTMVADYLRGHGFEVRTLASGETMNSTLAAWPADVIVMDLMLPG 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
DG+ L +R + + D+ ++ +T LSKPF R+L+ +
Sbjct: 61 EDGLTLCKRLSVDKQTADIPIIMLTARGEETDRIVGLEMGADDYLSKPFSTRELLARLRS 120
Query: 117 LLTI 120
+L
Sbjct: 121 VLRR 124
>gi|323485055|ref|ZP_08090408.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium symbiosum WAL-14163]
gi|323693570|ref|ZP_08107773.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium symbiosum WAL-14673]
gi|323401611|gb|EGA93956.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium symbiosum WAL-14163]
gi|323502378|gb|EGB18237.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium symbiosum WAL-14673]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ D+ FL L +GYEV +G +++ + L+L DI++P++D
Sbjct: 1 MS-KILIIEDERDIEEFLRFFLEDSGYEVAVARDGLEGITAFQKDRYDLILLDIMLPKID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + ++ V+ IT ++ ++KPF + L+ ++ +L
Sbjct: 60 GFAVCELIRKE-SNIPVIMITALSSEEEQVRGLDLLADDYITKPFSMPVLIRKIAAVLRR 118
>gi|192359567|ref|YP_001983303.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
gi|190685732|gb|ACE83410.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ D+ L L Y +G SA ++R + L++ D+++P++D
Sbjct: 1 MN--ILIVEDEIDLGEILRDYLNAENYTTELVGDGESALARIRNGQWDLIILDLMLPKLD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + + ++ T + KPF R++V V +L
Sbjct: 59 GLSVCREVRKQ-SQVPIIMTTAKVEEIDRLLGLEVGADDYICKPFSPREVVARVKAVLRR 117
>gi|332974487|gb|EGK11409.1| response regulator [Desmospora sp. 8437]
Length = 237
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL +DD D+ + + +EV+ G A V ++ DI++P +
Sbjct: 11 MMRTILAVDDDRDIVHLIREGFRYESSFEVIPAYTGEEALKIVDSRSVDFVILDIMLPGL 70
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E RR + + ++ ++ L+KPF R+L+ V
Sbjct: 71 DGMETCRRIRQQH-TVPILLLSARDRELDKVIGLEIGADDYLTKPFSPRELLARVKAHFR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|313499205|gb|ADR60571.1| DNA-binding response regulator [Pseudomonas putida BIRD-1]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G ++ E F LL+ D+ +P MDG+E
Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVGGLHALQHETFDLLILDLGLPRMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A+ L KPF L +L + LL
Sbjct: 62 LLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|307331969|ref|ZP_07611063.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306882402|gb|EFN13494.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 227
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 68 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|283777982|ref|YP_003368737.1| two component transcriptional regulator, winged helix family
[Pirellula staleyi DSM 6068]
gi|283436435|gb|ADB14877.1| two component transcriptional regulator, winged helix family
[Pirellula staleyi DSM 6068]
Length = 266
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMD 60
+ IL+ ED+ + + L GY V +G +A + + E+ L++ D+++P M
Sbjct: 8 KHILVVEDERHLSVGIKFNLEAEGYRVSVVEDGKAALNLLEDPEQEIDLMILDLMLPGMS 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + D+ ++ ++ ++ LSKPF L +L++ V LL
Sbjct: 68 GYAVCEAVRNAGNDIPILMLSARTLPEDRTRGFDVGTSQYLSKPFDLDELLSRVKNLLK 126
>gi|229113505|ref|ZP_04242954.1| Two-component response regulator [Bacillus cereus Rock1-15]
gi|229164674|ref|ZP_04292538.1| Two-component response regulator [Bacillus cereus R309803]
gi|228618754|gb|EEK75716.1| Two-component response regulator [Bacillus cereus R309803]
gi|228669923|gb|EEL25317.1| Two-component response regulator [Bacillus cereus Rock1-15]
Length = 221
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+D+ M L L GY + +G A V + F LLL DI+MPEM+G E +
Sbjct: 2 DDEPRMLDLLSLYLTPRGYHCIKATSGKEAISLVEAKEFRLLLLDIMMPEMNGWETCNKI 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++ +T ++KPFH +L+ + +L
Sbjct: 62 RE-FSSVPIIMLTARDDTQDVIQGLKKGADDYVTKPFHEEELLARIEAVLRR 112
>gi|224539015|ref|ZP_03679554.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus
DSM 14838]
gi|224519343|gb|EEF88448.1| hypothetical protein BACCELL_03912 [Bacteroides cellulosilyticus
DSM 14838]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R + +L K + V + + SA DKV + + +L DI++P G++
Sbjct: 2 KILIVEDEPDLRETIRISLVKEHFVVETAADYFSALDKVNDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ + L+KPFHL +L V ++ +
Sbjct: 62 LLRELKRLHRSDSVLIISAKDSLDDKVEGLELGADDYLTKPFHLAELNARVKSVIRRR 119
>gi|197302965|ref|ZP_03168015.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
29176]
gi|197297960|gb|EDY32510.1| hypothetical protein RUMLAC_01692 [Ruminococcus lactaris ATCC
29176]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +L+ EDD ++R + L GYEV +G + +E L + DI+MP +D
Sbjct: 9 MN-HVLVVEDDKEIREGVKIYLKSQGYEVYEAADGIEGLKVLEKEEIHLAIVDIMMPRLD 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 68 GIRMTMKLREKY-DFPVIMLSAKSEEVDKVMGLNIGADDYVTKPFTPMELMARVNSQLRR 126
>gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans]
gi|133738246|emb|CAL61291.1| Phosphate regulon transcriptional regulatory protein PhoB
[Herminiimonas arsenicoxydans]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+ + + L AG+ V + A+D +++ L+L D ++P+ G
Sbjct: 5 KPTILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSG 64
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R +L ++ +T + ++KPF R+L +N LL
Sbjct: 65 LRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLR 124
Query: 120 IK 121
K
Sbjct: 125 RK 126
>gi|160898512|ref|YP_001564094.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160364096|gb|ABX35709.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
gi|222834138|gb|EEE72615.1| predicted protein [Populus trichocarpa]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++LL EDD + L L G EV+ C G ++ + L+ DI++P +DG
Sbjct: 4 TRRVLLVEDDAHIADLLTLHLRDEGLEVMHCARGDDGLRQLERGGWDALVLDIMLPGVDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RRA + ++ I+ ++ L+KPF + +LV V LL
Sbjct: 64 LEICRRARAMARYTPIIIISARSSEVQRILGLEIGADDYLAKPFSVLELVARVKALLRR 122
>gi|148654515|ref|YP_001274720.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus sp. RS-1]
gi|148566625|gb|ABQ88770.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus sp. RS-1]
Length = 513
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 58/117 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + F + L GY V + NG A ++ F L+LTD+ MPEM G+EL
Sbjct: 14 ILVVEDDPMVNSFCARLLHMKGYSVKTVFNGREALTMLQTNRFDLVLTDLQMPEMGGMEL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R E PD+ + T +A V ++ L+KPF + +L V R + +
Sbjct: 74 LREMREQHPDIDTIMFTAYATVETAREALKLGAFDYLTKPFSVDELERTVRRAVEWR 130
>gi|148656746|ref|YP_001276951.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148568856|gb|ABQ91001.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+DD+ L++ L + GY V +G + + L++ D+ +P +DG++
Sbjct: 2 RLLLIEDEDDLAHALVRGLRQQGYAVDWAADGEQGCELASINEYDLIILDLNLPALDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P L ++ +T L KPFH +L+ + LL
Sbjct: 62 VCRYLRANYPHLLILILTARDQPEERVIGLDTGADDYLIKPFHFGELLARIRALLRR 118
>gi|83312500|ref|YP_422764.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82947341|dbj|BAE52205.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Magnetospirillum
magneticum AMB-1]
Length = 168
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M IL+ +DD +R L L GY V C G + + P L+L D+ MP
Sbjct: 1 MTPAHILVVDDDATVRSILSGILTAQGYRVTPCGGGEEMWAALAAGPADLVLLDVEMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L +R E L ++ +TG A+ + LSKP R+L+ + LL
Sbjct: 61 DGYTLVQRLRERFA-LGIILLTGHTALEHKLHGLEIGADEFLSKPCDRRELLARIKSLLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|16761566|ref|NP_457183.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29143047|ref|NP_806389.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213163396|ref|ZP_03349106.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213427815|ref|ZP_03360565.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582713|ref|ZP_03364539.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213650085|ref|ZP_03380138.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824413|ref|ZP_06544002.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25300975|pir||AF0838 transcription regulator tctD [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16503867|emb|CAD05893.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138680|gb|AAO70249.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|125975295|ref|YP_001039205.1| two component transcriptional regulator [Clostridium thermocellum
ATCC 27405]
gi|256003046|ref|ZP_05428038.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|125715520|gb|ABN54012.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum ATCC 27405]
gi|255992737|gb|EEU02827.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 2360]
gi|316939457|gb|ADU73491.1| two component transcriptional regulator, winged helix family
[Clostridium thermocellum DSM 1313]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +DD + L L + GY VV + G A + EE L+L D++MPE+
Sbjct: 1 MDKYNILVCDDDKAIVDALEIYLKQEGYNVVKAHTGKQALKALEEEKIHLVLMDVMMPEL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + E ++ ++ ++ + ++KPF+ +LV V L
Sbjct: 61 DGLSATVKIREEL-NIPIIILSAKSEDTDKIIGLNFGADDYVTKPFNPLELVARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|296533817|ref|ZP_06896354.1| response regulator [Roseomonas cervicalis ATCC 49957]
gi|296265853|gb|EFH11941.1| response regulator [Roseomonas cervicalis ATCC 49957]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + L + G++V + +G SA + P L + DI MP MD
Sbjct: 1 MPATIALVDDDRNILTSVSMTLEQEGFQVRTYTDGESALQGLLARPVDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T ++KPF R L+ + LL
Sbjct: 61 GMELLQRLRQR-SSMPVIFLTSKDEELDQLMGLRLGADDYITKPFSQRLLIERIRALLRR 119
>gi|182436017|ref|YP_001823736.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326776641|ref|ZP_08235906.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|178464533|dbj|BAG19053.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326656974|gb|EGE41820.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ DI++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + VM +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVMMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|145596986|ref|YP_001161283.1| response regulator receiver [Salinispora tropica CNB-440]
gi|145306323|gb|ABP56905.1| response regulator receiver [Salinispora tropica CNB-440]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 47/116 (40%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ + + L + G+ V +G + R + + DI +P + G E+
Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E V+F+T ++KPF R+LV V +L
Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRR 126
>gi|160880986|ref|YP_001559954.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160429652|gb|ABX43215.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
K+L+ +D+ MR+ + L ++ Y+V+ NG A D ++ SL++ D++MP+MDG
Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ +T + + +SKPF + LV V ++
Sbjct: 65 QVCKEIRK-YSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRR 121
>gi|77919739|ref|YP_357554.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77545822|gb|ABA89384.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter carbinolicus DSM 2380]
Length = 492
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ +D++ MR FL L + GY V + ++G A ++E+ + L+++DI MP +DG
Sbjct: 28 HRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDGF 87
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E ++ IT F+ D+ ++KPF ++ V L
Sbjct: 88 GLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKNEEIRLVVENALER 145
>gi|254464929|ref|ZP_05078340.1| response regulator receiver modulated serine phosphatase
[Rhodobacterales bacterium Y4I]
gi|206685837|gb|EDZ46319.1| response regulator receiver modulated serine phosphatase
[Rhodobacterales bacterium Y4I]
Length = 417
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D RR L+ +L K G+EVV +G +A + + E L+L+D +MP M+G+
Sbjct: 13 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICQAETPDLILSDWMMPGMNGL 72
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRL 117
E R + + +T + + L+KP +L + R+
Sbjct: 73 EFCRAFRSRSSEDYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 132
Query: 118 LTIK 121
L ++
Sbjct: 133 LRMQ 136
>gi|154496872|ref|ZP_02035568.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
29799]
gi|150273830|gb|EDN00943.1| hypothetical protein BACCAP_01165 [Bacteroides capillosus ATCC
29799]
Length = 263
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+AEDD + + L K Y V + + G A E + ++ DI+MP +DGI
Sbjct: 41 RLLVAEDDLKLLKSLKHIFEKNKYMVDAVSTGTEALAYAETEEYDGMVLDIMMPGLDGIA 100
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R +F+T V + LSKPF +L+ V +L K+
Sbjct: 101 VLRSVRGQGISTPALFLTAKTEVDQRVEGLDAGADDYLSKPFSTSELLARVRAMLRRKD 159
>gi|119509337|ref|ZP_01628486.1| Two Component Transcriptional Regulator, LuxR family protein
[Nodularia spumigena CCY9414]
gi|119465951|gb|EAW46839.1| Two Component Transcriptional Regulator, LuxR family protein
[Nodularia spumigena CCY9414]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +++LL +DD ++ + L GYEV + NG A + + ++ +++ D++MPE
Sbjct: 16 MKDHKRLLLIDDDPNLILLVKDYLEFRGYEVNTAENGREALEILEQDIPDMIICDVMMPE 75
Query: 59 MDGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG + + + + V+F++ A + KPF +LV +V
Sbjct: 76 MDGYTFVEQVRQNERTGWIPVLFLSAKGQSADRVKGLNKGADVYMVKPFEPEELVAQVES 135
Query: 117 LLT 119
L
Sbjct: 136 SLK 138
>gi|84623104|ref|YP_450476.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|84367044|dbj|BAE68202.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 1 MTGKKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 61 SGIEVLSAIRRA-SDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|21222625|ref|NP_628404.1| response regulator [Streptomyces coelicolor A3(2)]
gi|7242751|emb|CAB77324.1| putative response regulator [Streptomyces coelicolor A3(2)]
gi|298285547|emb|CAD67559.2| regulatory protein [Streptomyces lividans]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAIATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|332639012|ref|ZP_08417875.1| two-component response regulator [Weissella cibaria KACC 11862]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYE V ++G A K+R P L++ DI+MP+M+G
Sbjct: 2 KILIVDDDHEIAELLEIYVKNEGYEPVIASDGREAMTKIRTNPDIGLIILDIMMPDMNGT 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +P + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVLKEVRKDNP-VPILMLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118
>gi|329957649|ref|ZP_08298124.1| transcriptional regulatory protein RprY [Bacteroides clarus YIT
12056]
gi|328522526|gb|EGF49635.1| transcriptional regulatory protein RprY [Bacteroides clarus YIT
12056]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ V+F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPVIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|113953975|ref|YP_731313.1| DNA-binding response regulator [Synechococcus sp. CC9311]
gi|113881326|gb|ABI46284.1| DNA-binding response regulator [Synechococcus sp. CC9311]
Length = 250
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
+ILL +D+ + L L GYEV ++GAS K R +P L++ D +P+ G+
Sbjct: 13 RILLVDDEVHLTELLRLELDVEGYEVEVASDGASGLIKARSQPEPDLIVLDWNLPDFSGV 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ +R ++ +TG +A + L KPF + +L+ + + +
Sbjct: 73 DICQRIRSSGVTTPILMLTGHDDIADRVKALDAGVDDYLVKPFSIEELMARLRA-MQRR 130
>gi|317494534|ref|ZP_07952947.1| nitrogen regulation protein NR(I) [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917464|gb|EFV38810.1| nitrogen regulation protein NR(I) [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 473
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG V+ NG D + + +LL+DI MP MDG+ L
Sbjct: 8 VWIVDDDSSIRWVLERALTGAGMRCVTFENGNQVLDALATQTPDVLLSDIRMPGMDGLAL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 68 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 122
>gi|302537791|ref|ZP_07290133.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302446686|gb|EFL18502.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R + L + G+EV + G + L+L D+++P ++G++
Sbjct: 3 RVLLIEDDPSIREGVGLGLRRRGHEVSAAATGEEGLALIGGFRPELVLLDLMLPGINGVQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ +T + KP + + +L
Sbjct: 63 VCRRIRE-TSQVPIIMLTARGDDFDIVVGLEAGADDYIVKPARTEIIEARIKAVLRR 118
>gi|226364525|ref|YP_002782307.1| OmpR family two-component response regulator [Rhodococcus opacus
B4]
gi|226243014|dbj|BAH53362.1| putative OmpR family two-component response regulator [Rhodococcus
opacus B4]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D+ +R + L G++VV+ ++G +A +L+ D+++P DG+
Sbjct: 4 RRVLVVDDEATIREAVAARLRAEGFDVVTASDGPAAVTVCAASSPDVLVLDVMLPGFDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T A LSKPF +R LV V+ LL
Sbjct: 64 EVCRRVQASRP-VPVLMLTARADETDMLIGLGVGADDYLSKPFSMRVLVARVHALLRR 120
>gi|255281933|ref|ZP_05346488.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
gi|255267606|gb|EET60811.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
Length = 237
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ EDD D+R + L Y V NG + + E L++ D++MP M
Sbjct: 1 MKKESILIIEDDPDIREGVRILLEGEDYTVTEAENGRKGLELLNAET-DLVILDVMMPGM 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GI ++ ++ V+F+T + + L KPF +L+ V LL
Sbjct: 60 SGIRTCEEIRKV-SNVPVLFLTAKSQESGKLIGLMAGGDDYLPKPFSYSELLGRVKALLR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|126656662|ref|ZP_01727876.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
CCY0110]
gi|126621882|gb|EAZ92590.1| multi-sensor signal transduction histidine kinase [Cyanothece sp.
CCY0110]
Length = 1324
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTD 53
KILL ED+ DMR +L + L YEV + N+G A +R + L+LTD
Sbjct: 943 KAKILLVEDNADMRNYLKRLLDPY-YEVETANDGLEALTLIRNVSDHNNHGAMYDLILTD 1001
Query: 54 IVMPEMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
I+MP +DG EL + + ++ ++ A + L KPF R L+
Sbjct: 1002 IMMPRLDGFELLQSLRDNSEMQKIPIIMLSARAGEEFQIEGLEAGADDYLWKPFSARQLL 1061
Query: 112 NEVNRLLTI 120
V L +
Sbjct: 1062 ARVKTHLKL 1070
>gi|52140505|ref|YP_086323.1| response regulator [Bacillus cereus E33L]
gi|51973974|gb|AAU15524.1| response regulator [Bacillus cereus E33L]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ D+ F+ +L GYEV S NG A ++ L++ D+++P+M+
Sbjct: 1 MADKILVVDDEPDILTFIEDSLVMEGYEVRSALNGEEALKQLDS-SVDLIILDVMLPDMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E P ++F++ + + +SKPF L++L + L
Sbjct: 60 GFKVCEKMRESYP-CPILFLSADGSERSRIEGLLIGGDDYISKPFSLKELKARIIANLRR 118
>gi|148265316|ref|YP_001232022.1| two component transcriptional regulator [Geobacter uraniireducens
Rf4]
gi|146398816|gb|ABQ27449.1| two component transcriptional regulator, winged helix family
[Geobacter uraniireducens Rf4]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED++ + L L ++G++ +G + V+ L+L D+++P
Sbjct: 1 MSGTILIVEDEEKLAALLADYLKQSGFDSEWLADGQAVVPWVKRHGPDLILLDLMLPGRR 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + D+ ++ IT + KPF R++V V LL
Sbjct: 61 GLDICKEIRS-FSDVPIIMITARIEEIDRLLGLELGADDYICKPFSPREVVARVKSLLRR 119
>gi|332652879|ref|ZP_08418624.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
D16]
gi|332518025|gb|EGJ47628.1| transcriptional regulatory protein CutR [Ruminococcaceae bacterium
D16]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ + + L GY V C +G A++ + E + L + D+ +P MDG++
Sbjct: 2 RILIVEDEAELCDTIAEGLELDGYAVDRCYDGKVAHELLAVETYDLAVLDLNLPGMDGMD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R +++ +LKV+ ++ +V+ L+KPF +L + LL
Sbjct: 62 VLREVRKVNQELKVLILSARGSVSDKVQGLDNGANDYLAKPFAFEELEARIRSLLRR 118
>gi|296113942|ref|YP_003627880.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis RH4]
gi|295921636|gb|ADG61987.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis RH4]
Length = 256
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59
MN KIL+ ED+ + + L + ++VV + AY V +E L+L D +MP
Sbjct: 27 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 86
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI+ ARR + D+ ++ +T ++KPF R+L++ V +
Sbjct: 87 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 146
Query: 118 LTI 120
L
Sbjct: 147 LRR 149
>gi|288927611|ref|ZP_06421458.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 317
str. F0108]
gi|288330445|gb|EFC69029.1| DNA-binding response regulator RprY [Prevotella sp. oral taxon 317
str. F0108]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K ILL EDD+++ L + L GY C +G + Y + F + + D++MP+
Sbjct: 1 MDEKLKILLCEDDENLGMLLREYLQAKGYMAELCPDGEAGYKAFLKTKFDICVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + + ++ ++F+T + ++KPF + +LV V +L
Sbjct: 61 KDGFTLAQEIRQANSEIPIVFLTAKTLKEDILEGFKIGADDYITKPFSMEELVFRVEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|322419915|ref|YP_004199138.1| winged helix family two component transcriptional regulator
[Geobacter sp. M18]
gi|320126302|gb|ADW13862.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M18]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL EDD + L +AG+ V+ +G A + R E L + D+++P++
Sbjct: 1 MSRPILLVEDDLKLAEIARVYLEQAGFRVIHTESGVRALELARSENPVLAVLDLMLPDLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R T D+ V+ +T ++ A + KPF R+LV V +L
Sbjct: 61 GEAVCRELTAST-DIPVIMLTSKSSEEERLAGFALGADDYIVKPFSPRELVCRVQAVLKR 119
>gi|238794125|ref|ZP_04637741.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
29909]
gi|238726523|gb|EEQ18061.1| Transcriptional regulatory protein tctD [Yersinia intermedia ATCC
29909]
Length = 221
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 58/115 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L ED ++ +L KAL AG+ V N+G +A ++ E ++L++ D+ +P ++G++L
Sbjct: 1 MLVEDHPELSHWLQKALTHAGFAVDVANDGVAADHLLQNENYTLVVLDVALPRLNGLDLL 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+ +T VA L+KPF + +L + LL
Sbjct: 61 ARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRR 115
>gi|262200993|ref|YP_003272201.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262084340|gb|ACY20308.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED++ + L L K G+E N+GA A ++L D+++P M G E
Sbjct: 3 HVLIVEDEESLADPLAFLLRKEGFEASVVNDGAQALSTFDRVSPDIVLLDLMLPGMSGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 63 ICKALR-TRSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|254419790|ref|ZP_05033514.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
gi|196185967|gb|EDX80943.1| response regulator receiver domain protein [Brevundimonas sp. BAL3]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 6/125 (4%)
Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M+Q +L+ +DD D+R L + L + G+ V +G + + P L++ D+
Sbjct: 1 MSQTAVFPVLLVVDDDRDIRNLLSEHLEQHGFRTVKAADGRAMRAALEAGPVDLVVLDLN 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P+ DG+ L R V+ +T ++KPF R+LV +
Sbjct: 61 LPDEDGLSLCRAIRA-TSRTPVIMLTARGDPIDRIVGLEMGADDYMAKPFEPRELVARIR 119
Query: 116 RLLTI 120
+L
Sbjct: 120 TVLRR 124
>gi|183984426|ref|YP_001852717.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
M]
gi|183177752|gb|ACC42862.1| two-component transcriptional regulator TrcR [Mycobacterium marinum
M]
Length = 254
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V +NG A K + +L+ DI++P++DG++
Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGLQ 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R + D +F+T +V ++KPF L +LV + LL +
Sbjct: 90 ILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 148
>gi|182413658|ref|YP_001818724.1| two component transcriptional regulator [Opitutus terrae PB90-1]
gi|177840872|gb|ACB75124.1| two component transcriptional regulator, winged helix family
[Opitutus terrae PB90-1]
Length = 216
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ L+KALG+ GY V + G K + ++ D+++PE+DG
Sbjct: 2 RLLVVEDDPDLLANLLKALGEEGYAVDGADTGPEGLFKAESWDYDAIVLDVMLPELDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R V+ +T A L+KPF L +L + L+
Sbjct: 62 LLQRLR-RTKRTPVLMLTARDATQDRVRGLDIGADDYLTKPFDLPELCARLRALIRR 117
>gi|251797011|ref|YP_003011742.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247544637|gb|ACT01656.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+D +R +I L K G++ + G+ A + +R L++ D+++P+MDG
Sbjct: 2 KTVLVVEDEDKIRDVVISYLKKEGFKTLEAATGSYALEVLRSSLVDLVILDLMLPDMDGE 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ ++ + + L KPF R++V V +L
Sbjct: 62 QVCVSIRKTNS-IPILMLSAKMSDNNRIKGLSIGADDYLIKPFDPREVVARVRAILRR 118
>gi|196037899|ref|ZP_03105209.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
gi|196031169|gb|EDX69766.1| regulatory protein VanRB [Bacillus cereus NVH0597-99]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+
Sbjct: 1 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRR 119
>gi|148656813|ref|YP_001277018.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
gi|148568923|gb|ABQ91068.1| putative PAS/PAC sensor protein [Roseiflexus sp. RS-1]
Length = 969
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +DD +RR L L AGY V G A + L+L D+ +P
Sbjct: 1 MTELAHILVVDDDASVRRMLQILLSNAGYRVSLATTGEEALAYLELVTPDLVLLDVALPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ G ++ R P + V+ +TG + + L KP L +L+ V
Sbjct: 61 VSGRQVMERIKSDPDRPFIPVILVTGHSDPEAKVAALDAGADDFLVKPVDLAELLARVRA 120
Query: 117 LLTIK 121
+L ++
Sbjct: 121 MLRLQ 125
>gi|86146655|ref|ZP_01064976.1| probable transcriptional regulator SyrB [Vibrio sp. MED222]
gi|85835502|gb|EAQ53639.1| probable transcriptional regulator SyrB [Vibrio sp. MED222]
Length = 221
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +DD + L + L GY V + + G SA + ++ P L+L D+++P +
Sbjct: 1 MS-RVLVVDDDIQLCELLGEVLENEGYHVDTVHCGESALEFIQSNPVDLVLLDVMLPNLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ARR + ++ +T A D + ++KPF++ +L+ + +L
Sbjct: 60 GIQVARRICQRFA-TPILMLTALNDDASMLDGYQAGADQYIAKPFNVPELLTRIKVILRR 118
>gi|254689707|ref|ZP_05152961.1| Protein petR [Brucella abortus bv. 6 str. 870]
gi|256257958|ref|ZP_05463494.1| Protein petR [Brucella abortus bv. 9 str. C68]
gi|260755239|ref|ZP_05867587.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260884254|ref|ZP_05895868.1| two component transcriptional regulator [Brucella abortus bv. 9
str. C68]
gi|297248793|ref|ZP_06932511.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Brucella abortus bv. 5 str. B3196]
gi|260675347|gb|EEX62168.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260873782|gb|EEX80851.1| two component transcriptional regulator [Brucella abortus bv. 9
str. C68]
gi|297175962|gb|EFH35309.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Brucella abortus bv. 5 str. B3196]
Length = 241
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD +R L + L +G+ V + A A K+ F LL+ D++MP G+ L
Sbjct: 23 LVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVSLT 82
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 83 RSLREQ-KNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 136
>gi|296124054|ref|YP_003631832.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
gi|296016394|gb|ADG69633.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
Length = 264
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMPEMD 60
+IL+ ED++ + L + GYEVV +G A V + E F+L++ D+++P +
Sbjct: 2 RILVVEDEEAIAEGLKFNFEQEGYEVVVATDGHEALAAVSQTDTEEFALIVLDLMLPGLS 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + V+ ++ + + ++KPF LR++++ V L+
Sbjct: 62 GYEVLRELRQKLVMTPVLVLSARTLSEDKILAFDLGGDQYMTKPFALREILSRVKSLIHR 121
>gi|256420693|ref|YP_003121346.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256035601|gb|ACU59145.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL EDD + + L KAGY VV C++G ++ +E PF + L D+VMP MD
Sbjct: 1 MKAGVLLVEDDHFFAKVIKSHLEKAGYLVVHCSDGEEGWNTFQERPFDICLLDVVMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G LAR + + ++ ++F T + L KPF++ +L+ ++ +
Sbjct: 61 GFALAREIRDRNENIPIIFTTSRYMEQDKLNGFECGGDDYLVKPFNMEELLCRMDVFMKR 120
>gi|254480429|ref|ZP_05093676.1| phosphate regulon transcriptional regulatory protein PhoB [marine
gamma proteobacterium HTCC2148]
gi|214039012|gb|EEB79672.1| phosphate regulon transcriptional regulatory protein PhoB [marine
gamma proteobacterium HTCC2148]
Length = 234
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +L+ ED+ +R L AL A Y + N A+ + +E ++L D ++P
Sbjct: 1 MSEPTVLVVEDEKAIRDMLRMALEVAKYRFIEAENIRDAHVLIVDERPDIVLLDWMLPGG 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+EL RR D ++ V+ +T AA ++KPF R+L+ + L
Sbjct: 61 SGLELLRRLKREDNTREIPVIMLTAKAAEDNVIQGLEVGADDYVTKPFAPRELIARIQAL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|172036101|ref|YP_001802602.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
gi|171697555|gb|ACB50536.1| two-component hybrid sensor and regulator [Cyanothece sp. ATCC 51142]
Length = 1349
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 39/129 (30%), Positives = 56/129 (43%), Gaps = 11/129 (8%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--------EPFSLLLTD 53
KIL+ ED+ DMR +L K L YEV + N+G A +R + L+LTD
Sbjct: 958 KAKILIVEDNGDMRDYLKKLLDPY-YEVETVNDGLEALTLIRNVSDHNNNGGMYDLVLTD 1016
Query: 54 IVMPEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
I+MP +DG EL R + ++ I+ + L KPF R L+
Sbjct: 1017 IMMPRLDGFELLRSLRNKPETQKIPIIMISARTGEESQVEGLEAGADDYLGKPFSARQLL 1076
Query: 112 NEVNRLLTI 120
V L +
Sbjct: 1077 TRVESHLKL 1085
>gi|167759600|ref|ZP_02431727.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
gi|167662726|gb|EDS06856.1| hypothetical protein CLOSCI_01958 [Clostridium scindens ATCC 35704]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + L + GYEV+ +G A + +E LL+ D++MP++D
Sbjct: 3 MS-KILVCDDDKEIVEAIDIYLSQEGYEVLKAYDGEEALKVLGKEKIDLLVIDVMMPKLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E + ++ ++ ++ + A ++KPF+ +LV V L
Sbjct: 62 GIRATLKIREAN-NMPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 120
>gi|153005119|ref|YP_001379444.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152028692|gb|ABS26460.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 468
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD
Sbjct: 1 MKYRVLIVDDEADSRDALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R P+ V+ +TG + + + KP + L + R L
Sbjct: 61 GLWLLRALRAELPECPVVLLTGRGTIQTAVQAIKEGAYDFIEKPLEVPRLRLVLERALEK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|156743249|ref|YP_001433378.1| response regulator receiver modulated PAS/PAC sensor-containing
diguanylate cyclase/phosphodiesterase [Roseiflexus
castenholzii DSM 13941]
gi|156234577|gb|ABU59360.1| response regulator receiver modulated diguanylate
cyclase/phosphodiesterase with PAS/PAC sensor(s)
[Roseiflexus castenholzii DSM 13941]
Length = 900
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D D +R L++ L G++ G A D + ++ F L+L D++MP+M+
Sbjct: 1 MPSRILVVDDHDYIRHLLVRLLTSQGHQTSVATGGREALDLLSQQSFDLVLLDLMMPDMN 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ + + + V+ ++G + + L KPF+ L VN L
Sbjct: 61 GIEVLEQLRQQNVIYHTPVIVVSGVHDLDMVAQCIELGADDYLFKPFNDVLLRARVNASL 120
Query: 119 TIK 121
K
Sbjct: 121 ERK 123
>gi|108797641|ref|YP_637838.1| two component transcriptional regulator [Mycobacterium sp. MCS]
gi|119866728|ref|YP_936680.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|126433265|ref|YP_001068956.1| two component transcriptional regulator [Mycobacterium sp. JLS]
gi|108768060|gb|ABG06782.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. MCS]
gi|119692817|gb|ABL89890.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|126233065|gb|ABN96465.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. JLS]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVADGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|154686246|ref|YP_001421407.1| YvrH [Bacillus amyloliquefaciens FZB42]
gi|42491108|emb|CAE11245.1| YvrH protein [Bacillus amyloliquefaciens FZB42]
gi|154352097|gb|ABS74176.1| YvrH [Bacillus amyloliquefaciens FZB42]
Length = 267
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ K+L+ +D+ ++ + L + G VV+ + + +E L++ DI++
Sbjct: 33 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIML 92
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ A ++KPF +++ V
Sbjct: 93 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 151
Query: 117 LLTI 120
L
Sbjct: 152 QLRR 155
>gi|84494860|ref|ZP_00993979.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
gi|84384353|gb|EAQ00233.1| putative two-component system response regulator [Janibacter sp.
HTCC2649]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + + L GY V ++G +A E L++ D+++P DG+E+
Sbjct: 4 VLVVEDEPMINQAVTDRLRAEGYTVHQAHDGPAAVAAFTEHAPDLVVLDVMLPGFDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + P + V+ +T ++KPF +R++V + LL
Sbjct: 64 CRRIQAIRP-VPVLMLTARDEETDILVGLGVGADDYVTKPFRMREVVARTHALLRR 118
>gi|300785061|ref|YP_003765352.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299794575|gb|ADJ44950.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ +R L AL AG+ V S A EP L+L D+++P+MD
Sbjct: 1 MTSRLLVVDDEATVRELLSAALRFAGFRVTSAATAREAVAAATAEPPDLVLLDVMLPDMD 60
Query: 61 GIELARRATELDPD----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G E+ RR E P + V+F+T + + ++KPF L +L+ +
Sbjct: 61 GFEVVRRLRERHPGHGAPVPVLFLTARDRQSDKVTGLSLGADDYVTKPFDLAELIARIRA 120
Query: 117 LLTI 120
+L
Sbjct: 121 ILRR 124
>gi|294084834|ref|YP_003551594.1| winged helix family two component transcriptional regulator
[Candidatus Puniceispirillum marinum IMCC1322]
gi|292664409|gb|ADE39510.1| two component transcriptional regulator, winged helix family
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I L +DD ++ + L G++V N+G +A + +P L + DI MP MD
Sbjct: 1 MSNRIALVDDDQNILTSVSLMLESEGFDVDCYNDGEAALQGMARQPVELAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ + + L V+F+T ++KPF R L+ + +L
Sbjct: 61 GVELLQKIRK-NSQLPVIFLTSKDDELDEALGFGMGADDYITKPFSQRLLLARIRAVLRR 119
>gi|239909225|ref|YP_002955967.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
gi|239799092|dbj|BAH78081.1| OmpR family two-component response regulator [Desulfovibrio
magneticus RS-1]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + F++ L ++G+ V NG EP+ + + D+++P +DG++
Sbjct: 2 RILLVEDDEKIASFILGGLRQSGFAVDHAANGPDGLHLAATEPYCVAIIDVMLPGLDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +V LSKPF +L+ V L+
Sbjct: 62 VIEELRRRKIMTPIIILSAKRSVEDRVRGLETGGDDYLSKPFSFAELLARVQALIRR 118
>gi|220911674|ref|YP_002486983.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
gi|219858552|gb|ACL38894.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MN+ K+L+ +D+ ++R L +L AG+EVVS NG A L + D++
Sbjct: 1 MNKNGPEAKLLVVDDEPNIRELLSTSLRFAGFEVVSAANGRDALAAADAHAPDLAVLDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P+MDG + RR V+F+T ++KPF L ++V +
Sbjct: 61 LPDMDGFTVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIR 120
Query: 116 RLLTI 120
+L
Sbjct: 121 AVLRR 125
>gi|167764870|ref|ZP_02436991.1| hypothetical protein BACSTE_03262 [Bacteroides stercoris ATCC
43183]
gi|167697539|gb|EDS14118.1| hypothetical protein BACSTE_03262 [Bacteroides stercoris ATCC
43183]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|153008102|ref|YP_001369317.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|239833192|ref|ZP_04681521.1| phosphate regulon transcriptional regulatory protein PhoB
[Ochrobactrum intermedium LMG 3301]
gi|151559990|gb|ABS13488.1| two component transcriptional regulator, winged helix family
[Ochrobactrum anthropi ATCC 49188]
gi|239825459|gb|EEQ97027.1| phosphate regulon transcriptional regulatory protein PhoB
[Ochrobactrum intermedium LMG 3301]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q KI + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQAPKIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRENVPDLLILDWMLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQWPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRSN 126
>gi|120603758|ref|YP_968158.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
vulgaris DP4]
gi|120563987|gb|ABM29731.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
vulgaris DP4]
Length = 657
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL +D++ +R+ L L AGY V + +G A + EE ++LTDI MP M
Sbjct: 1 MSESILLVDDEEGIRKVLGITLADAGYRVTTAADGEEAMRRFAEERPDIVLTDIKMPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+EL D +++V+ +TG + L S ++KP + L + R
Sbjct: 61 GLELLESIKSRDSEVEVIMLTGHGDMELAIQSLKRDATDFITKPINDDVLDIALGRARER 120
Query: 118 --LTIK 121
+ +
Sbjct: 121 ITMRRR 126
>gi|167040839|ref|YP_001663824.1| two component transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|300914874|ref|ZP_07132190.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307723892|ref|YP_003903643.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter sp. X513]
gi|166855079|gb|ABY93488.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X514]
gi|300889809|gb|EFK84955.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X561]
gi|307580953|gb|ADN54352.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter sp. X513]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QK+L+ ED++ MR L L GYEV+ NG + S++L DI++P++ G
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF ++++ V +L+
Sbjct: 62 WSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSR 119
>gi|90420712|ref|ZP_01228618.1| two-componenet transcriptional regulator [Aurantimonas
manganoxydans SI85-9A1]
gi|90335003|gb|EAS48764.1| two-componenet transcriptional regulator [Aurantimonas
manganoxydans SI85-9A1]
Length = 299
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q IL+ +DD ++ R L K L G+ + + K+ + L++ D+++P+
Sbjct: 50 MSQPHILVVDDDPEIGRLLGKYLESQGFRCTIAASRRACEQKIADARIDLVVLDVMLPDG 109
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ R + P++ ++ +T L KPF+ R+L + +L
Sbjct: 110 SGLDICRDLKDRRPEIAIILLTALKEDVDRIIGLEIGADDYLGKPFNPRELAARIRAVLR 169
Query: 120 IKN 122
N
Sbjct: 170 RVN 172
>gi|91775264|ref|YP_545020.1| two component, sigma54 specific, Fis family transcriptional
regulator [Methylobacillus flagellatus KT]
gi|91775408|ref|YP_545164.1| two component, sigma54 specific, Fis family transcriptional
regulator [Methylobacillus flagellatus KT]
gi|91709251|gb|ABE49179.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylobacillus flagellatus KT]
gi|91709395|gb|ABE49323.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylobacillus flagellatus KT]
Length = 456
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL +DD D+ + + L AGY+V++ N A ++ SL++TD+ MP MDG
Sbjct: 5 TKKILTVDDDPDILKLMGMRLQAAGYQVITATNAEEALSQIAISRPSLVITDLRMPGMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L + DP L V+ +T ++ D+ L+KPF + L+ +V L I
Sbjct: 65 LALFDAIHQSDPALPVIMVTAHGSIPEAVDATQRGVFGFLTKPFDSKSLLQQVEAALRI 123
>gi|46578674|ref|YP_009482.1| sensory box histidine kinase/response regulator [Desulfovibrio
vulgaris str. Hildenborough]
gi|46448086|gb|AAS94741.1| sensory box histidine kinase/response regulator [Desulfovibrio
vulgaris str. Hildenborough]
gi|311232547|gb|ADP85401.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
vulgaris RCH1]
Length = 657
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL +D++ +R+ L L AGY V + +G A + EE ++LTDI MP M
Sbjct: 1 MSESILLVDDEEGIRKVLGITLADAGYRVTTAADGEEAMRRFAEERPDIVLTDIKMPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+EL D +++V+ +TG + L S ++KP + L + R
Sbjct: 61 GLELLESIKSRDSEVEVIMLTGHGDMELAIQSLKRDATDFITKPINDDVLDIALGRARER 120
Query: 118 --LTIK 121
+ +
Sbjct: 121 ITMRRR 126
>gi|290352123|dbj|BAI78772.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFSR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|282878926|ref|ZP_06287690.1| response regulator receiver domain protein [Prevotella buccalis
ATCC 35310]
gi|281298925|gb|EFA91330.1| response regulator receiver domain protein [Prevotella buccalis
ATCC 35310]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L GY C +G Y + ++ F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKGYTATLCPDGEVGYREFLKDKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + D+ ++F+T + ++KPF + +LV V +L
Sbjct: 66 LAQEIRQANADMPIIFLTAKVLKEDILEGFKIGADDYITKPFSMEELVLRVEAILRR 122
>gi|257453899|ref|ZP_05619176.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
SK60]
gi|257448671|gb|EEV23637.1| putative transcriptional regulator OmpR [Enhydrobacter aerosaccus
SK60]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPEM 59
+ +LL EDD D+ + + LG YEV + + + L++ D+++P+M
Sbjct: 8 TKTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDM 67
Query: 60 DGIELARRATELD----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+++ +R + ++ +T +SKPF R+L+ +
Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127
Query: 116 RLLTIKN 122
++ +
Sbjct: 128 AVMRRHD 134
>gi|228996926|ref|ZP_04156559.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229004602|ref|ZP_04162340.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228756643|gb|EEM05950.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228762805|gb|EEM11719.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 250
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ ILL +D+ + L+ L K + V + NG+ + V+ PF ++L D+++P++D
Sbjct: 14 TENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPDID 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + ++F+T ++ ++KPF+ ++ +N L
Sbjct: 74 GFELCRQIRN-YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRR 132
Query: 121 K 121
+
Sbjct: 133 Q 133
>gi|167748370|ref|ZP_02420497.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
gi|317472095|ref|ZP_07931427.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
gi|167652362|gb|EDR96491.1| hypothetical protein ANACAC_03114 [Anaerostipes caccae DSM 14662]
gi|316900499|gb|EFV22481.1| response regulator receiver domain-containing protein [Anaerostipes
sp. 3_2_56FAA]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED+ + L + +EV +G E F +++ DI++P +D
Sbjct: 1 MS-RVLIVEDELAIAELEKDYLELSSFEVEIETDGEKGLKLGLTEDFDMIILDIMLPGVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E D+ ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKQIREK-KDIPILMVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLER 118
>gi|167037940|ref|YP_001665518.1| two component transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320116355|ref|YP_004186514.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|166856774|gb|ABY95182.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929446|gb|ADV80131.1| response regulator receiver [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QK+L+ ED++ MR L L GYEV+ NG + S++L DI++P++ G
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF ++++ V +L+
Sbjct: 62 WSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSR 119
>gi|117926854|ref|YP_867471.1| response regulator receiver protein [Magnetococcus sp. MC-1]
gi|117610610|gb|ABK46065.1| response regulator receiver protein [Magnetococcus sp. MC-1]
Length = 564
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD L + L K G++V + NG + +E L+L DI MP M+G E
Sbjct: 2 KILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGYE 61
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
ARR L P+ + ++F+T L+KPF+ L ++ +
Sbjct: 62 AARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNRTILQAKIGAM 117
>gi|319950313|ref|ZP_08024232.1| putative OmpR family two-component response regulator [Dietzia
cinnamea P4]
gi|319436005|gb|EFV91206.1| putative OmpR family two-component response regulator [Dietzia
cinnamea P4]
Length = 235
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +R L + L G+ V + +G + + + F +++ DI+MP G E
Sbjct: 2 RVLVVDDEPALRESLRRGLAAGGWSVETAPDGEAGLEMACGDDFDVVVLDIMMPRRSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T D+ L KPF L + L+
Sbjct: 62 VVREMRQRGIWTPVLMLTAKDGEYDEADAFDLGADDYLVKPFSFVVLEARLRALVRR 118
>gi|313906136|ref|ZP_07839485.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313469023|gb|EFR64376.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV +G S D+ EE F + + D+++P +D
Sbjct: 1 MS-RILIIEDEESIAELEKDYLELSGFEVAIETDGESGRDRALEEDFDMFILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFAICKQIREK-KNTPIIIVSAKKDDIDKIHGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|221195593|ref|ZP_03568648.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
gi|221184780|gb|EEE17172.1| response regulator receiver protein [Atopobium rimae ATCC 49626]
Length = 227
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ M ++ L + Y+V +G SA + + + + D++MP+M+G E
Sbjct: 2 RILLAEDEKRMAAAIVALLKQEKYDVDHMADGVSALLALESNMYDIAILDVMMPKMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++R+A + ++ +T + + + L+KPFH +L+ + L ++
Sbjct: 62 VSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFHTAELLARLRA-LGRRS 119
>gi|218291334|ref|ZP_03495294.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|258512228|ref|YP_003185662.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
gi|218238780|gb|EED05994.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius LAA1]
gi|257478954|gb|ACV59273.1| two component transcriptional regulator, winged helix family
[Alicyclobacillus acidocaldarius subsp. acidocaldarius
DSM 446]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L + L + Y V ++G + D + + L + DI++P+M G++
Sbjct: 2 RILLVEDEVRLASALKQLLKEHQYAVDVAHDGETGCDLALTDSYDLAILDIMLPKMSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + V+ +T V L KPF ++L+ V L+ +
Sbjct: 62 ILRAMRKAGLQTPVLLLTAKDTVEDRVTGLDAGADDYLVKPFDNKELLARVRA-LSRR 118
>gi|146297292|ref|YP_001181063.1| two component transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410868|gb|ABP67872.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor saccharolyticus DSM 8903]
Length = 234
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +D+ D+ + + L GYEV + + +S + E +++ DI++P++DG EL
Sbjct: 6 VYVVDDEKDILDIIYQYLISRGYEVKTFEDASSFLKEFEENEPDIVILDIMLPDIDGYEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + ++ ++ ++ + +SKPF L +L + ++L
Sbjct: 66 CKKIRK-SSNVPIIMLSAKGEEFDKVLGLELGSDDYISKPFSLLELEARIKKILRR 120
>gi|89070625|ref|ZP_01157905.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516]
gi|89043772|gb|EAR49974.1| DNA-binding response regulator [Oceanicola granulosus HTCC2516]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KILL +DD+D+R L + L ++V NG+ A K +E+ L++ D+ +P+ DG
Sbjct: 5 KKILLVDDDEDIREALSEQLVMTEDFDVFEAANGSEAMTKAKEQHHDLVILDVGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R + ++ +TG + + ++KPF L+ + L
Sbjct: 65 RELCRLMRKQGVKAPILMLTGHDSDSDQILGLDSGANDYVTKPFKFPVLLARIRAQLR 122
>gi|329954319|ref|ZP_08295412.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
gi|328527847|gb|EGF54837.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
Length = 1362
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLAED++++R+++ ++L Y V+ NG A D E+ L+L+DI+MP MDG+E
Sbjct: 1108 TVLLAEDNEEVRQYVKESLEPYFY-VLDVGNGKDALDLSLEKYPDLILSDIMMPGMDGLE 1166
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + + V+ +T + V + + + KPF + L+ +N +L +
Sbjct: 1167 LCSRVKQDLQLGHIPVILMTAKSMVVHIKEGFSVGADDYIVKPFSMDVLICRINNILESR 1226
>gi|315643933|ref|ZP_07897103.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315280308|gb|EFU43597.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGI 62
+L+ +DD ++ + L GY V+ ++G A + E L++ D++MP ++GI
Sbjct: 4 VLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALLAMATNEGTVDLVILDVMMPRLNGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ ++ + + KPF+ +L V LL
Sbjct: 64 DTCRRIRE-TSSIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRR 120
>gi|300865283|ref|ZP_07110097.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
gi|300336756|emb|CBN55247.1| putative Sensor protein [Oscillatoria sp. PCC 6506]
Length = 498
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D RFL K L GY V +G + P +L+L DI+MP+MDG E
Sbjct: 10 KILIVDDQPSNLRFLSKILTDQGYNVKRAISGQLGLNAALGSPPNLILLDIMMPDMDGYE 69
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ E + ++F++G V + ++KPF + +++ ++ + ++
Sbjct: 70 LCQKLKSMESTRSVPIIFLSGLDDVQYKIKAFQVGGVDYITKPFQVEEVLARIDTQIALQ 129
>gi|298485836|ref|ZP_07003914.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159660|gb|EFI00703.1| Sensory box/GGDEF family protein [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 705
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|289207427|ref|YP_003459493.1| transcriptional regulator [Thioalkalivibrio sp. K90mix]
gi|288943058|gb|ADC70757.1| two component transcriptional regulator, winged helix family
[Thioalkalivibrio sp. K90mix]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ++++ EDD +R + + + G V + ++G + + E + + D+ +P MD
Sbjct: 1 MNLRVVVIEDDLALRSQIAEEMENNGCRVDTASDGDTGLYLLTEYHCDIAVVDLGLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R+A E+ P L ++ +T + L+KPFH+++LV + L
Sbjct: 61 GLDVIRKAREVKPQLPILILTARDRWQDKVEGLEAGADDYLTKPFHIQELVARLRALARR 120
>gi|194466634|ref|ZP_03072621.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|227543945|ref|ZP_03973994.1| response regulator [Lactobacillus reuteri CF48-3A]
gi|300909695|ref|ZP_07127156.1| response regulator [Lactobacillus reuteri SD2112]
gi|77745285|gb|ABB02543.1| response regulator [Lactobacillus reuteri]
gi|194453670|gb|EDX42567.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|227186061|gb|EEI66132.1| response regulator [Lactobacillus reuteri CF48-3A]
gi|300893560|gb|EFK86919.1| response regulator [Lactobacillus reuteri SD2112]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ F+ L GY+ +G + + + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR EL D ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREL-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|330802407|ref|XP_003289209.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
gi|325080737|gb|EGC34280.1| hypothetical protein DICPUDRAFT_35308 [Dictyostelium purpureum]
Length = 2059
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAED+ +R ++ L K G++V NG A + F L+L D+ MP M G E
Sbjct: 1740 ILLAEDNVVNQRLAVRLLEKFGHKVTLAENGLQAVAACEIKHFDLILMDVQMPHMGGFEA 1799
Query: 65 ARRATELDP----DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +L+ ++ +T A +SKP + L + + + L
Sbjct: 1800 TAQIRKLESNEGIHTPIIAMTAHALARDRVKCIEAGMDDYISKPINPDQLKSMIEKYL 1857
Score = 43.2 bits (102), Expect = 0.011, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEMD 60
L+ +D+ + + L + L + G S +NG AY + + P+ L D + + +
Sbjct: 1604 LVVDDNKNTVKVLCQMLFEFGITSDSTDNGQDAYKMMTKAAQSNRPYEFLFIDAQI-DTN 1662
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-LT 119
++L +L V+ + P++ + LSKP +++ + + ++
Sbjct: 1663 IVDLISEDPKL-SKTNVIMLICGGGQRGCPENASSLIGGYLSKPVSPSEMLEILQKQGIS 1721
Query: 120 IKN 122
++
Sbjct: 1722 RQS 1724
>gi|302346694|ref|YP_003814992.1| response regulator receiver domain protein [Prevotella
melaninogenica ATCC 25845]
gi|302150766|gb|ADK97027.1| response regulator receiver domain protein [Prevotella
melaninogenica ATCC 25845]
Length = 235
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L G++ C +G Y + + + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGTLLSEYLQAKGFQADLCPDGEVGYRAFLKSKYDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEVPIIFLTAKQLKEDILEGFKIGADDYITKPFSMEELVFRIEAILRR 122
>gi|220904043|ref|YP_002479355.1| Fis family two component sigma-54 specific transcriptional
regulator [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219868342|gb|ACL48677.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio desulfuricans subsp. desulfuricans
str. ATCC 27774]
Length = 453
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 56/115 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD + R L L + GY V+ +NG A +E PF L+L D+ M M GIE
Sbjct: 8 KLLVVDDDRNHREMLRALLEEWGYAPVTVDNGEEAVALCQESPFDLILMDVRMGGMSGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R +P + V+ +T ++ VA ++ L+KP L + R L
Sbjct: 68 ATRAIKGYNPAIPVLIMTAYSDVANAVEALKAGAYDYLTKPLAFDALKLALERAL 122
>gi|83816760|ref|YP_444628.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
gi|83758154|gb|ABC46267.1| histidine kinase DhkJ [Salinibacter ruber DSM 13855]
Length = 1346
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++LLAEDD R + L K G+EV + ++GA A VR++ + +L D+ MPE+DG
Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+E RR P V+ +T LSKP +L +
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 45/129 (34%), Gaps = 22/129 (17%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMDGIE 63
+L+ +D R L + G E +G A ++ + + L D +P+M G
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133
Query: 64 LARRATELDP--DLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
LA + E +L V+ + A L KP L + +
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR-----------LHKPIKQSSLHDTL 1182
Query: 115 NRLLT-IKN 122
LLT +N
Sbjct: 1183 TALLTGREN 1191
>gi|83945515|ref|ZP_00957862.1| stalked-cell differentiation controlling protein [Oceanicaulis
alexandrii HTCC2633]
gi|83851091|gb|EAP88949.1| stalked-cell differentiation controlling protein [Oceanicaulis
alexandrii HTCC2633]
Length = 450
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + RR L L ++V+ +G + D R E ++L DI+MP MD
Sbjct: 1 MSARILVVDDIETNRRLLEARLTAEYFDVLMAQDGPTCLDLARCEKPDVILLDIMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E RR + V+ +T + + L+KP L V LL
Sbjct: 61 GFETCRRLKADPETRHIPVVMVTALDQRSDRIRGLEAGADEFLTKPVDDVALFARVRSLL 120
Query: 119 TI 120
+
Sbjct: 121 RL 122
Score = 52.1 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 11/111 (9%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
+ R L L GY + A + R L++ D+ P DG+ L R D
Sbjct: 164 IARALPATLDAHGY-----GDPKIAISQAR--HADLVIVDLSSPRFDGLRLCARIRS-DV 215
Query: 74 DLKVMFITGFAAVALN---PDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
D + + + G + V+S+P +L L K
Sbjct: 216 DTRQVPLLGVVDEMDKRTMVRALDLGVNDVISRPLDPGELSARSATQLKRK 266
>gi|315645479|ref|ZP_07898603.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315278957|gb|EFU42267.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++ + + + GY++++ ++G A + ++ + L++ D++MP+MDGIE
Sbjct: 5 TILMVDDETEIIKLMEIYVRNEGYKLLTASHGLEALEILKTQKVDLIILDVMMPQMDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + + ++KPF +L+ + L
Sbjct: 65 ACMKIREEN-NTPIIMLSAKSQEIDKIAGLSIGADDYVTKPFSPLELIARIKSQLRR 120
>gi|313906333|ref|ZP_07839675.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
gi|313468839|gb|EFR64199.1| two component transcriptional regulator, winged helix family
[Eubacterium cellulosolvens 6]
Length = 243
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + R++ L GYEV NG A + F L+L DI++P ++
Sbjct: 1 MGAHILIVEDESKLARYVELELLHEGYEVTKSENGREALELALSNHFDLILLDIMLPGLN 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR + V+ +T AV ++KPF + +L+ + L
Sbjct: 61 GLEVLRRLNKEQEMNPTPVILLTARDAVMDKVSGLDAGAVDYITKPFAIEELLARIRVAL 120
Query: 119 TI 120
+
Sbjct: 121 KL 122
>gi|227327463|ref|ZP_03831487.1| two-component system regulatory protein [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD D L L + GY+V ++G L+L D+++P+M+G
Sbjct: 4 KRVLIIEDDMDAASVLEAYLRRDGYQVSIASDGQRGLHMALTSKPDLILLDVMLPKMNGS 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + ++ V+ +T + + KP++ +++V V +L
Sbjct: 64 EVLSALRQR-SNIPVIMVTAIGDDPERIGALRYGADDYVVKPYNPQEVVARVQAVLRR 120
>gi|225377346|ref|ZP_03754567.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
16841]
gi|225210877|gb|EEG93231.1| hypothetical protein ROSEINA2194_02994 [Roseburia inulinivorans DSM
16841]
Length = 240
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++R + L GY V +G + +EP L + DI+MP MDG+ +
Sbjct: 11 ILVVEDDKEIRDGIEIFLKSQGYHVYKAADGVEGLQIIEKEPIHLAIVDIMMPRMDGVTM 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + V+ ++ + ++KPF +L+ VN L
Sbjct: 71 TIKLREHH-EFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 125
>gi|239816532|ref|YP_002945442.1| two component heavy metal response transcriptional regulator,
winged helix family [Variovorax paradoxus S110]
gi|239803109|gb|ACS20176.1| two component heavy metal response transcriptional regulator,
winged helix family [Variovorax paradoxus S110]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + +L K L + GY V +G E ++L+L D+++P +DG
Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGDYALILLDVMLPGIDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ +T V + L KPF +L+ + LL
Sbjct: 62 VLQAIR-RTSNVPVLVLTARDKVEDRVNGLQQGADDYLVKPFSFSELLARIQALLRR 117
>gi|209528443|ref|ZP_03276873.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
gi|209491122|gb|EDZ91547.1| adenylate/guanylate cyclase [Arthrospira maxima CS-328]
Length = 352
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN +L+ +D++ R L + L K GY+V+ +NG A +R L+L DI+MP
Sbjct: 1 MNAHPDLVLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTALDLVLLDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+M+G ++ + V+ I+ + LSKPF+ L +N
Sbjct: 61 QMNGYQVLESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARIN 120
Query: 116 RLLTIK 121
L K
Sbjct: 121 ACLEKK 126
>gi|194292202|ref|YP_002008109.1| response regulator in two-component regulatory system, regulation
of heavy metal resistance operon czccba [Cupriavidus
taiwanensis LMG 19424]
gi|193226106|emb|CAQ72053.1| response regulator in two-component regulatory system, regulation
of heavy metal resistance operon czcCBA [Cupriavidus
taiwanensis LMG 19424]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L ++G+ V +GA RE P+ L++ D+++P +DG E
Sbjct: 2 RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+F+T ++ + KPF +LV + +L
Sbjct: 62 VLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117
>gi|253702066|ref|YP_003023255.1| Fis family transcriptional regulator [Geobacter sp. M21]
gi|251776916|gb|ACT19497.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M21]
Length = 453
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + GY+V + +G + E+ ++++TD+ MP
Sbjct: 1 MPAKILVIDDDSSLRRVLEYNLQQEGYDVYTAADGDAGLQLFVEKSPAVVVTDLKMPGKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ E P V+ +T F A+ ++ L+KPF+ +L V + L +
Sbjct: 61 GFEVLSAIKESSPATVVIVLTAFGAIDTAVEAMKLGAFHYLTKPFNREELKVTVLKALQL 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|75908776|ref|YP_323072.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75702501|gb|ABA22177.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 437
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ + + L +A+ G++ + +G SA ++ L+L D++MP +DG E
Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + + V+F+T + ++KPF +++ + L I +
Sbjct: 72 CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKISH 131
>gi|90424799|ref|YP_533169.1| response regulator PleD [Rhodopseudomonas palustris BisB18]
gi|90106813|gb|ABD88850.1| response regulator receiver modulated diguanylate cyclase
[Rhodopseudomonas palustris BisB18]
Length = 457
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ +NGA A + ++L D++MP+MD
Sbjct: 1 MSARILVVDDIPANAKLLEARLSAEYFDVLTASNGAQALEICSRAACDIVLLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L+ V L
Sbjct: 61 GFEVCRRLKSNPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RVK 123
Score = 69.4 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + V N + A + + LL+ + + E DG+
Sbjct: 157 RILLVDDRPSSYERLAPVLAAE-HAVDVEPNPSEALFHAADGNYDLLIVSLGLEEFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I A L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAIADADNNARLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|296102592|ref|YP_003612738.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295057051|gb|ADF61789.1| DNA-binding response regulator [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD D L L + Y+V +G + + + L+L D+++P ++G
Sbjct: 3 SRRVLIIEDDADAAGVLEAYLRRENYDVNVTGDGLAGLEMAQRWKPDLVLLDVMLPGLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ D+ V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLASLRRK-SDVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|291280200|ref|YP_003497035.1| two-component system, OmpR family, response regulator
[Deferribacter desulfuricans SSM1]
gi|290754902|dbj|BAI81279.1| two-component system, OmpR family, response regulator
[Deferribacter desulfuricans SSM1]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +DD ++ L L ++VV+ +G +A + ++ + L+L D+ +P+++
Sbjct: 1 MQYKVLIIDDDYEILEILKLFLEIENFDVVTTQSGLNALNLIKNNQYDLILLDLGLPDIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E+ + ++ IT +V+ + KPF +L+ + +L
Sbjct: 61 GEHICKKIREM-SETPIIIITAKESVSNKVLCFEYGCDDYIIKPFEKMELLARIKAILRR 119
Query: 121 KN 122
N
Sbjct: 120 SN 121
>gi|262376905|ref|ZP_06070132.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
gi|262308250|gb|EEY89386.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter lwoffii SH145]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DGIE 63
IL+ +D+ +R + +L AG++ + + A+ + ++ +L+L D +MP G++
Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ V+ +T ++KPF R+LV+ + +L
Sbjct: 66 LCRRLKRDESLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|189463982|ref|ZP_03012767.1| hypothetical protein BACINT_00317 [Bacteroides intestinalis DSM
17393]
gi|189438555|gb|EDV07540.1| hypothetical protein BACINT_00317 [Bacteroides intestinalis DSM
17393]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|169826014|ref|YP_001696172.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
gi|168990502|gb|ACA38042.1| two-component response regulator [Lysinibacillus sphaericus C3-41]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ DMR + L + E + +G AYD + E L+L D++MP D
Sbjct: 1 MMTTVLIVDDEQDMRNLIEMMLNNSDIETYTAASGTEAYDIIVREKIDLVLLDVMMPHED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++F+T A + KPF +L + +L
Sbjct: 61 GFVVCQSIRAM-SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELAARIYAVLRR 119
>gi|168185395|ref|ZP_02620030.1| transcriptional regulatory protein ResD [Clostridium botulinum C
str. Eklund]
gi|169296276|gb|EDS78409.1| transcriptional regulatory protein ResD [Clostridium botulinum C
str. Eklund]
Length = 222
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ MR+ L ++ + V+ +G A +E +++ DI++P +DG
Sbjct: 2 KILIIEDEERMRKLLRDYFNRSEFSVLEAEDGVKALKVFKENSVDIVILDIMIPYLDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + + ++ +T ++KPF + LV +V LL
Sbjct: 62 VCKSIRQ-NSKVPIIMLTAKGEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKR 117
>gi|116333655|ref|YP_795182.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
gi|116099002|gb|ABJ64151.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus brevis ATCC 367]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L GYE NG + + + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLARFVELELKHEGYETNVQFNGRTGLEAALSQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR E+ ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREVKS-TPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|90414215|ref|ZP_01222196.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
gi|90324765|gb|EAS41303.1| hypothetical protein P3TCK_09108 [Photobacterium profundum 3TCK]
Length = 488
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED + L K G+ V + NNG A + + L+L D+ MPEM+G E
Sbjct: 361 TILLVEDSPSNQMIAKAILAKNGFNVATANNGKEAVAALENTSYDLILMDLQMPEMNGFE 420
Query: 64 LARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L D+ ++ +T + + L+KP + ++ ++ L
Sbjct: 421 ACTYIRDLHNNKSDIPIIAMTANVSQQDQVQCLSVGMDDFLTKPINKIKMLEVLHHWLGR 480
Query: 121 KN 122
+
Sbjct: 481 NH 482
>gi|85059514|ref|YP_455216.1| putative two-component regulator protein [Sodalis glossinidius str.
'morsitans']
gi|84780034|dbj|BAE74811.1| putative two-component regulator protein [Sodalis glossinidius str.
'morsitans']
Length = 168
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ R ++ L ++GY V NG E + L+L D++MPE++G E
Sbjct: 2 KILVIDDEPKAREYMRSGLTESGYVVDVAVNGREGVFMAEEYYYDLILLDVMMPELNGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + L D V+F+T + V L KPF +L+ + L
Sbjct: 62 VMKTLDSLL-DTPVIFLTAKSTVDDRIKGLELGADDYLVKPFSFAELLARIRTALRR 117
>gi|18202894|sp|Q9F868|REGX3_MYCS2 RecName: Full=Sensory transduction protein regX3
gi|9964001|gb|AAG09797.1|AF258346_2 response regulator RegX3 [Mycobacterium smegmatis str. MC2 155]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|17232800|ref|NP_489348.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17134447|dbj|BAB77007.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 437
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ + + L +A+ G++ + +G SA ++ L+L D++MP +DG E
Sbjct: 12 VLLVDDNPNNLKVLSEAVQGCGWKALMATDGESALEQTEYAHPDLILLDVMMPGIDGFET 71
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + + V+F+T + ++KPF +++ + L I +
Sbjct: 72 CRRLKANPITQNTPVIFMTALSDATDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKISH 131
>gi|15604292|ref|NP_220808.1| PETR protein (ompR) [Rickettsia prowazekii str. Madrid E]
gi|3860984|emb|CAA14884.1| PETR PROTEIN (ompR) [Rickettsia prowazekii]
gi|292572041|gb|ADE29956.1| PetR [Rickettsia prowazekii Rp22]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + L + L K + V + N+ A + ++ + L++ D+++P + G++
Sbjct: 7 HILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A + ++ ++ +T + + ++KPF R+L+ +N L+ N
Sbjct: 67 FATTIRDAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNYN 125
>gi|331699380|ref|YP_004335619.1| winged helix family two component transcriptional regulator
[Pseudonocardia dioxanivorans CB1190]
gi|326954069|gb|AEA27766.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length = 229
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+ G SA ++ ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESFADPLAFLLRKEGFTAAVATTGQSALEEFDRNGADIVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTDVCRSLRSR-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|325847010|ref|ZP_08169836.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325480982|gb|EGC84027.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KI++ +D+ ++ L L G+ V N A D V E F L++ DI++ +MD
Sbjct: 1 MNDKIIIVDDEKEIADLLELCLTNDGFSVSKAFNAKDALDLVEAENFDLMILDIMLEDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++ E ++ +T ++KPF+ +++ V L
Sbjct: 61 GFSVCKKIREKHY-FPIIMLTSRIDSNDKILGLTMGADDYITKPFNPLEVIARVKTQLRR 119
>gi|319783915|ref|YP_004143391.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317169803|gb|ADV13341.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 244
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L G V +G +R + F L++ D+++P +G+
Sbjct: 13 RILIVEDDLEIARMLGDTLTDNGMTVEIAESGVQMNAALRTQKFDLIVLDVMLPGENGLN 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T ++KPF R+L + LL
Sbjct: 73 ICRRLRAAT-NIPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 128
>gi|300854912|ref|YP_003779896.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300435027|gb|ADK14794.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 227
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + RF+ L GY V +G +K E F L++ D+++P ++G+
Sbjct: 4 EKILIVEDEVKIARFVELELQHEGYIVDKAVDGRDGLEKALNENFDLIILDVMLPSLNGM 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
E+ RR + + ++ V+ +T + ++KPF + +L+ +
Sbjct: 64 EVLRRLRQ-NSEVPVIMLTAKDEIMDKVMGLDIGADDYITKPFAIEELLARIR 115
>gi|294506378|ref|YP_003570436.1| histidine kinase-response regulator hybrid protein [Salinibacter
ruber M8]
gi|294342706|emb|CBH23484.1| histidine kinase-response regulator hybrid protein [Salinibacter
ruber M8]
Length = 1346
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++LLAEDD R + L K G+EV + ++GA A VR++ + +L D+ MPE+DG
Sbjct: 1207 SRRVLLAEDDAVNRTMTTQLLEKMGHEVYTASDGAEALAAVRDQAYDAILMDVQMPELDG 1266
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+E RR P V+ +T LSKP +L +
Sbjct: 1267 LEATRRLRNEMPSEEQPYVVALTASVTEDDRRRCLEAGMDAFLSKPIRKDELAEAL 1322
Score = 60.1 bits (146), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 46/129 (35%), Gaps = 22/129 (17%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFS-LLLTDIVMPEMDGIE 63
+L+ +D R L + G E +G A ++ + + L D +P+M G
Sbjct: 1074 VLIVAPNDTNRALLRQQTETWGMEATVFASGDEALQQLDADRAHEVALIDEHLPQMSGHA 1133
Query: 64 LARRATELDP--DLKVMFITG-------FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
LA + E +L V+ + A L KP +L + +
Sbjct: 1134 LATQLRERASGTELPVVLLGAGPAATPDLTAPTSR-----------LHKPIKQSNLHDTL 1182
Query: 115 NRLLT-IKN 122
LLT +N
Sbjct: 1183 TALLTGREN 1191
>gi|296137486|ref|YP_003644728.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
gi|295797608|gb|ADG32398.1| two component transcriptional regulator, winged helix family
[Thiomonas intermedia K12]
Length = 240
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L L K G V + +G + + L++ D+++P DG+
Sbjct: 6 HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ V+ +T + L+KPF R+L+ + +L
Sbjct: 66 LCRQLRAK-SDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRR 121
>gi|224025799|ref|ZP_03644165.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
18228]
gi|224019035|gb|EEF77033.1| hypothetical protein BACCOPRO_02541 [Bacteroides coprophilus DSM
18228]
Length = 903
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ D+R ++ L Y V+ NG + + ++ D++MP MDG
Sbjct: 653 KETILVIDDNLDIRDYVRSVLQDE-YNVIEAANGQEGLQQAMKYVPDAIICDVMMPVMDG 711
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E RR + VM +T +A +SKPF R L + L+
Sbjct: 712 MECCRRLKSEVQTSHIPVMMLTAYAVDEQKIKGYECGADSYISKPFSARLLTVRLRNLIE 771
Query: 120 IK 121
+
Sbjct: 772 NR 773
>gi|196032134|ref|ZP_03099548.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
gi|218904325|ref|YP_002452159.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus cereus AH820]
gi|195994885|gb|EDX58839.1| transcriptional regulatory protein VanRB [Bacillus cereus W]
gi|218538575|gb|ACK90973.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus cereus AH820]
Length = 220
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD+ + + L AGY+V +C NG A+ K + + L++ DI++P M+
Sbjct: 1 MDIRILLVEDDEHICNAVKVFLSGAGYKVDACFNGDEAHTKFYDNTYQLVILDILLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R +L+ + V+ +T + + + ++KPF ++ L+ V LL
Sbjct: 61 GHELLREFRKLN-NTPVLMMTALSDDENQIRAFDAEADDYVTKPFKIQLLLKRVEALLRR 119
>gi|218248415|ref|YP_002373786.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 8801]
gi|218168893|gb|ACK67630.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 8801]
Length = 635
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD + + L + Y V + NNG + + + P+ ++L DI++P++DGI
Sbjct: 2 KILLIEDDASTSLAISQTLTQKKYAVDAVNNGETGLELAQLFPYDVILLDIMLPQLDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR ++ +T L KPF +L+ + L+ +
Sbjct: 62 VCRRLRSQQNHTPILLLTAKNHPRDCVMGLEAGADDYLVKPFDWAELLARIQA-LSRR 118
Score = 97.9 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L +DD + L L G+ VVS +N + + LL+ D+ MP G+
Sbjct: 509 TLMLIDDDPNFLEVLKATLTPWGFNVVSLSNPQQFWPVLEATNPDLLILDLEMPHFSGLN 568
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
L + + D + ++F++G L K + +L+ +
Sbjct: 569 LCQAVRKDDRFCSVPILFLSGHDDGESIRQMLVHGADCYLPKTIAVEELIECI 621
Score = 40.5 bits (95), Expect = 0.082, Method: Composition-based stats.
Identities = 10/93 (10%), Positives = 34/93 (36%), Gaps = 2/93 (2%)
Query: 30 VSCNNGASAYDKVREEPFSLLLTDIVM--PEMDGIELARRATELDPDLKVMFITGFAAVA 87
++ ++ A + + L+ D+ + +G+ + + +L + + + ++
Sbjct: 410 IAVSDLKEAKSFLTQTQPRGLVIDLDLLESREEGLIFLEQLRQEKTNLPFIILDTYNDLS 469
Query: 88 LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L KP L+ ++L +
Sbjct: 470 YRLEIARLGKGLFLQKPLTSDRLLKAAIKVLQL 502
>gi|168205907|ref|ZP_02631912.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
gi|170662604|gb|EDT15287.1| DNA-binding response regulator [Clostridium perfringens E str.
JGS1987]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ D++ L + K G++V + G D ++ SL++ D+++P++
Sbjct: 1 MEEKILIIEDEPDIQNILRYSFMKEGFKVRCVDKGRQGIDIFKDFNPSLVILDLMLPDIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R +L+ + ++ +T + ++KPF +R+ V V L
Sbjct: 61 GFDVCRELNKLNAN--IIMLTARDDIVDKVLGLELGADDYITKPFDIRECVARVKVALRR 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|194334444|ref|YP_002016304.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
gi|194312262|gb|ACF46657.1| histidine kinase [Prosthecochloris aestuarii DSM 271]
Length = 676
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ILL ED+ ++ + K GYE+ NG A + ++++ + L+L D+ MP MDG
Sbjct: 546 HRILLVEDNVINQKVAQAMIEKIGYEIDIAVNGEEAVEALQQKQYGLVLMDLQMPVMDGF 605
Query: 63 ELARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E RR + + + V+ +T A LSKP + L++ + R
Sbjct: 606 EATRRIRKFGGLASNARVPVVAMTANATREDRELCLRAGMDDYLSKPVERQVLLDMLQRW 665
Query: 118 L 118
L
Sbjct: 666 L 666
>gi|304398764|ref|ZP_07380635.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|304353711|gb|EFM18087.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD D L L + YEV+ +G D R L+L DI++P M+G
Sbjct: 4 KRILIIEDDADAAGVLEAYLKRENYEVMIVGDGPGGLDAARRWQPDLILLDIMLPGMNGT 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D D V+ +T + + + KP+H ++V V +L
Sbjct: 64 EVLAALRRRD-DTPVIMVTAMSDAPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRR 120
>gi|282861073|ref|ZP_06270138.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
gi|282563731|gb|EFB69268.1| two component transcriptional regulator, winged helix family
[Streptomyces sp. ACTE]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ DI++P DG+
Sbjct: 19 RRVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAESWQPDLMVLDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|261207330|ref|ZP_05922017.1| response regulator VanRG [Enterococcus faecium TC 6]
gi|289566529|ref|ZP_06446952.1| regulatory protein vanR [Enterococcus faecium D344SRF]
gi|294616551|ref|ZP_06696329.1| regulatory protein VanR [Enterococcus faecium E1636]
gi|260078390|gb|EEW66094.1| response regulator VanRG [Enterococcus faecium TC 6]
gi|289161683|gb|EFD09560.1| regulatory protein vanR [Enterococcus faecium D344SRF]
gi|291291671|gb|ADD91669.1| DdcR [Enterococcus faecium]
gi|291590598|gb|EFF22329.1| regulatory protein VanR [Enterococcus faecium E1636]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L GYEV G A D + E F L + D+++P++D
Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T ++KPF+ ++V + L
Sbjct: 61 GFKIVQKIRENH-FFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRR 119
>gi|260574724|ref|ZP_05842727.1| two component transcriptional regulator PhoB, winged helix family
[Rhodobacter sp. SW2]
gi|259023141|gb|EEW26434.1| two component transcriptional regulator PhoB, winged helix family
[Rhodobacter sp. SW2]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ R L L GY VV +G A D + +E L++ D +MP++ G+E+
Sbjct: 9 VLLVEDEAAQREVLAYNLAAEGYRVVQAGDGEEALDLIGDELPDLIVLDWMMPKVSGLEV 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++ ++ + + KP+ + +L+ V L
Sbjct: 69 CRRLKTRPETRAVPILMLSARSEEVDRVRGLETGADDYVIKPYSVAELMARVRANLRR 126
>gi|255320055|ref|ZP_05361251.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SK82]
gi|262380561|ref|ZP_06073715.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
gi|255302923|gb|EET82144.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SK82]
gi|262298007|gb|EEY85922.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE-MDGIE 63
IL+ +D+ +R + +L AG++ + + A+ + ++ +L+L D +MP + G++
Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGISGVD 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR E ++ V+ +T ++KPF R+LV+ + +L
Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|224537041|ref|ZP_03677580.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
14838]
gi|224521349|gb|EEF90454.1| hypothetical protein BACCELL_01917 [Bacteroides cellulosilyticus DSM
14838]
Length = 1439
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++++R F++ L K Y V+ NG + +K++ + L+++DI+MP +DGIEL
Sbjct: 1176 VLVVEDNEELRHFMVNILRK-DYHVIEAENGKTGLEKIKLKIPDLVISDIMMPCLDGIEL 1234
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ A + ++KPF L ++ LL ++
Sbjct: 1235 LEEVKKDYNVSHIPFVLLSAKATLDDRIKGLEYGADDYITKPFSSGYLRARISSLLKQRS 1294
>gi|150002641|ref|YP_001297385.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931065|gb|ABR37763.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1349
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1088 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1146
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + ++KPFH+ L L+
Sbjct: 1147 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHIEILRKTTANLIR 1206
Query: 120 IK 121
+
Sbjct: 1207 SR 1208
>gi|126661820|ref|ZP_01732819.1| two-component system, transcriptional regulatory protein
[Flavobacteria bacterium BAL38]
gi|126625199|gb|EAZ95888.1| two-component system, transcriptional regulatory protein
[Flavobacteria bacterium BAL38]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL EDD + L L +EV NG ++K +++ + L + D++MP DG
Sbjct: 4 KKILLVEDDPNFGAVLKDYLMINDFEVTLAKNGMEGFEKFKKDTYDLCILDVMMPYKDGY 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
LAR E + ++ ++F+T L+KPF L+ ++ ++ K
Sbjct: 64 TLAREIREKNQEVPIVFLTAKTLKEDVLKGYKVGADDYLNKPFDSEVLLMKIKAIIQRK 122
>gi|66046441|ref|YP_236282.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|63257148|gb|AAY38244.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|330972923|gb|EGH72989.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 222
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRSKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|78223873|ref|YP_385620.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter metallireducens GS-15]
gi|78195128|gb|ABB32895.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter metallireducens GS-15]
Length = 395
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L GY V + + +++ E SL+L D +MP MDG
Sbjct: 11 TILIIDDEKVILDLTSIVLSNRGYTVYTAPDAMVGLEELEEHHPSLVLLDYMMPVMDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + PD V+ TG + + + + KPF+ +DLV + +L I+
Sbjct: 71 ALKQIRQRFPDTYVIMFTGKGNEEIAVELMKAGASDYILKPFNNQDLVERIESVLRIR 128
>gi|330721354|gb|EGG99427.1| Two component Transcriptional regulator2C Winged helix family
[gamma proteobacterium IMCC2047]
Length = 233
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + + L+ +DD+ +R L K G E N A + + LL D+VMP
Sbjct: 1 MKKVRYLIVDDDEVIRESLAAYFEKYGIECDLAANAEEARHFLSNGQYDLLTVDVVMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIEL + + V+ +T +SKPF R L+ +L
Sbjct: 61 SGIELTKWIKAEFAHMPVILLTALDDAIDTVAGLEVGADDYVSKPFDFRVLLARAKAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|319955614|ref|YP_004166881.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
gi|319424274|gb|ADV51383.1| two component transcriptional regulator, winged helix family
[Cellulophaga algicola DSM 14237]
Length = 232
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ EDD ++ + L L Y +G E + L+L D+ +P MD
Sbjct: 1 MKQ-ILIIEDDPEIIKLLEIHLTDLIYTTAKAMDGKVGLAMALENSYDLILLDLTLPTMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + ++ +T + ++KPF +R+L+ V +L
Sbjct: 60 GIEICKKIRSQ-KNTPIIMLTAKSEEIDRVLGLEIGADDYITKPFSIRELLARVKAVLRR 118
>gi|302335659|ref|YP_003800866.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
gi|301319499|gb|ADK67986.1| two component transcriptional regulator, winged helix family
[Olsenella uli DSM 7084]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ +++ L A Y + +G S + ++ D ++P MD
Sbjct: 1 MN--ILVVEDERNLADAIVRILSDADYNAEAVYDGKSGLTACESGLYDAVIMDGMLPGMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + V+ +T + + + ++KPF +L+ + L
Sbjct: 59 GIEVVRRLRRENNSIPVLMLTARTSTSDKVEGLDAGADDYMTKPFESPELLARLRALTRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|300790141|ref|YP_003770432.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299799655|gb|ADJ50030.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V ++GA A + + + ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLEFNGYQVQLASDGAQALEAIIADRPDAMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ARR DL ++ +T V+ L KPF
Sbjct: 62 VARRLRSTGDDLPILVLTARDTVSDRVSGLDAGADDYLPKPF 103
>gi|256751773|ref|ZP_05492646.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|326391351|ref|ZP_08212890.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|256749301|gb|EEU62332.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus CCSD1]
gi|325992614|gb|EGD51067.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QK+L+ ED++ MR L L GYEV+ NG + S++L DI++P++ G
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDISIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF ++++ V +L+
Sbjct: 62 WSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVIARVKAILSR 119
>gi|209523923|ref|ZP_03272475.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209495595|gb|EDZ95898.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 236
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+QKIL+ +DD +R + + L + YEV S +G +A E L++ D+ +P+ G
Sbjct: 3 SQKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDEFNPDLVILDVNLPDTTG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + + V+ +T A ++KPF L +L V +L +
Sbjct: 63 FALCQEMQDRTR-VFVLLLTSLTGEADKIKGFELGADDYITKPFGLAELGARVRAILKRQ 121
>gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein
[Synechococcus sp. WH 5701]
gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein
[Synechococcus sp. WH 5701]
Length = 252
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G++V + N+G + +E L+++D++MP +DG
Sbjct: 27 RLLLVDDEPGLRTAVQAYLEDEGFDVTTANDGEEGWTAAQELIPDLVISDVMMPRLDGYG 86
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
L +R E V+F+T A + + KPF +L
Sbjct: 87 LLKRLRGDERLGGTPVIFLTAKGMTADRIEGFQAGVDDYIPKPFDPDEL 135
>gi|163845997|ref|YP_001634041.1| histidine kinase [Chloroflexus aurantiacus J-10-fl]
gi|222523722|ref|YP_002568192.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
gi|163667286|gb|ABY33652.1| Histidine kinase [Chloroflexus aurantiacus J-10-fl]
gi|222447601|gb|ACM51867.1| multi-sensor hybrid histidine kinase [Chloroflexus sp. Y-400-fl]
Length = 1347
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++ILLAED++ R L L GYEV G A E L++ DI MP +DG
Sbjct: 1222 SRRILLAEDNEVNRVTLSDYLVAQGYEVRVACQGKEALQIAAEWRPDLIIMDIQMPGLDG 1281
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+E+ +R ++ +T A + +KP LR LV + + L
Sbjct: 1282 LEVIQRLRADAAFAATPIIAVTALAMPGDRERCLSAGANDYFAKPIRLRQLVERIEQFL 1340
Score = 80.6 bits (199), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED L + L + + V C+ G A ++V+ L+L D+ MP+ G E+
Sbjct: 1096 LIIEDSATTADQLARYLEELQIQPVICSYGKGAVEQVQALRPDLILLDVQMPDRSGWEIL 1155
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ V+ ++ A A L KP + L ++++
Sbjct: 1156 ADLRRDPDLRQVPVIIVSVVDEPE---RGLAAGAAAYLVKPINRLMLRRALSQI 1206
>gi|327394622|dbj|BAK12044.1| transcriptional regulatory protein TctD [Pantoea ananatis AJ13355]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ R+L KAL + G+ V +G +A ++ E ++L++ D+ +P +DGIE
Sbjct: 2 RLLLVEDTAELARWLQKALTQKGFAVDWVADGLAADHSLQSEDYALVVLDVSLPRLDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + L+KPF L +L + LL
Sbjct: 62 VLTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRR 118
>gi|323342107|ref|ZP_08082340.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
19414]
gi|322464532|gb|EFY09725.1| DNA-binding response regulator [Erysipelothrix rhusiopathiae ATCC
19414]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ ED++ +RR L L + G++V S +G + + + +++ D ++P D
Sbjct: 1 MSKKILIIEDEEGIRRLLRYDLKQMGFDVYSAKDGREGLEMALQGQYDVIIVDWMLPYHD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL + + ++ +T A ++ LSKPF R+L + L
Sbjct: 61 GIELVAKFRDRGLKAILIMLTAKDEEADILEAFDAGVDDYLSKPFSPRELSARITAHLRR 120
>gi|254394028|ref|ZP_05009112.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294814967|ref|ZP_06773610.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|326443338|ref|ZP_08218072.1| putative two-component system response regulator [Streptomyces
clavuligerus ATCC 27064]
gi|197707599|gb|EDY53411.1| two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
gi|294327566|gb|EFG09209.1| Two-component system response regulator [Streptomyces clavuligerus
ATCC 27064]
Length = 245
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ D+++P DG+
Sbjct: 19 RRVLVVEDDSTIVDAIAARLRAEGFLVQTAADGPAAVDAAEAWQPDLMVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|254430750|ref|ZP_05044453.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
gi|197625203|gb|EDY37762.1| two component transcriptional regulator, winged helix family
[Cyanobium sp. PCC 7001]
Length = 254
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V +G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDSDMRDLVAGHLEHGGFDVQRAEDGIKGQALALQFTPDLVLLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT A L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTARIPILMITALADTKDKVSGFNSGADDYLTKPFDLEELTVRVKALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|307152943|ref|YP_003888327.1| LuxR family two component transcriptional regulator [Cyanothece sp.
PCC 7822]
gi|306983171|gb|ADN15052.1| two component transcriptional regulator, LuxR family [Cyanothece
sp. PCC 7822]
Length = 212
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+LL +DD ++ + L GYEV++ NG A D + ++ +++ D++MPEMDG
Sbjct: 10 KKLLLIDDDPNLILLVKDYLEFRGYEVITAENGREALDILEQQQIPDMIICDVMMPEMDG 69
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + +F++ + KPF +LV +V L+
Sbjct: 70 YAFVEKLRDDARTSWIPFLFLSAKGQSQDRIKGLRTGADVYMIKPFEPEELVAQVEACLS 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|253699596|ref|YP_003020785.1| Fis family transcriptional regulator [Geobacter sp. M21]
gi|251774446|gb|ACT17027.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M21]
Length = 458
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 53/118 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D++ +R L L GY V +G A E L+L DI MP+MD
Sbjct: 1 MTETILIVDDEEGIRSSLAGILEDEGYRTVCAADGVEALALCARELPGLVLLDIWMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ +R E P L V+ ++G + S + KP L +V V L
Sbjct: 61 GIQTLQRLKESHPFLNVIMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVVVTVENAL 118
>gi|187932341|ref|YP_001885950.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187720494|gb|ACD21715.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 235
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + L GY V +NG D ++ E L + DI+MP+MDGI++
Sbjct: 6 VLIVEDEKEICDAIAIYLNNQGYNVFKAHNGIEGLDVIKNETIHLAIVDIMMPKMDGIQM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ ++ + ++KPF+ +L+ VN L
Sbjct: 66 TMKLRGEF-DFPVIMLSAKSEEMDKIMGLNIGADDYITKPFNPMELLARVNSQLRR 120
>gi|23013751|ref|ZP_00053613.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 238
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++I + +D+ D+R L + L GY+V +GA A +R EP L + D+ +P+MDG
Sbjct: 4 KKRIYVIDDEPDIRALLRQVLEGYGYQVTPLASGALARQAIRREPPDLCIVDLGLPDMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L R E D V+ +TG V+ + KPF R+LV VN ++ +
Sbjct: 64 LTLVRELWE-DVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRR 122
Query: 122 N 122
+
Sbjct: 123 D 123
>gi|329922845|ref|ZP_08278361.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
gi|328941618|gb|EGG37903.1| response regulator receiver domain protein [Paenibacillus sp. HGF5]
Length = 239
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ IL+ +D+ + + L L K + + + ++G A +V+E+ + ++L DI++P++
Sbjct: 3 SATILVVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + ++FI+ + ++KPF+ +++ + +L
Sbjct: 63 GFELCTEIRKHT-NAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRR 121
Query: 121 K 121
+
Sbjct: 122 Q 122
>gi|17228424|ref|NP_484972.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
gi|75906731|ref|YP_321027.1| response regulator receiver domain-containing protein [Anabaena
variabilis ATCC 29413]
gi|17130275|dbj|BAB72886.1| two-component system, regulatory protein [Nostoc sp. PCC 7120]
gi|75700456|gb|ABA20132.1| Response regulator receiver domain protein (CheY) [Anabaena
variabilis ATCC 29413]
Length = 121
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED R + L +G V +G A + ++EEP L++ DIVMP+M+
Sbjct: 1 MS-TVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIKEEPPDLVVLDIVMPKMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR ++ V+ + ++KPF +LV V +LL
Sbjct: 60 GYEVCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|148544452|ref|YP_001271822.1| two component transcriptional regulator [Lactobacillus reuteri DSM
20016]
gi|184153816|ref|YP_001842157.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
gi|227363120|ref|ZP_03847255.1| response regulator [Lactobacillus reuteri MM2-3]
gi|325682774|ref|ZP_08162290.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
gi|148531486|gb|ABQ83485.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri DSM 20016]
gi|183225160|dbj|BAG25677.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
gi|227071838|gb|EEI10126.1| response regulator [Lactobacillus reuteri MM2-3]
gi|324977124|gb|EGC14075.1| DNA-binding response regulator [Lactobacillus reuteri MM4-1A]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ F+ L GY+ +G + + + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR E+ D ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREI-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|330503932|ref|YP_004380801.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328918218|gb|AEB59049.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 225
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +DD ++ L L + G++V +C+ A + + ++ D+++P+
Sbjct: 1 MS-RLLLIDDDQELCELLASWLTQEGFQVTACHEAGGARQALAAQAPDAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ P+L V+ ++ L+KP R+L + +L
Sbjct: 60 GLELLKQLRGEHPELPVLMLSARGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
>gi|270290423|ref|ZP_06196648.1| two-component system, OmpR family, KDP operon response regulator
KdpE [Pediococcus acidilactici 7_4]
gi|270281204|gb|EFA27037.1| two-component system, OmpR family, KDP operon response regulator
KdpE [Pediococcus acidilactici 7_4]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + RF+ L GYE NG + + E F +L D+++PE++
Sbjct: 1 MS-KILIIEDEKSLARFVELELQHEGYETEVQGNGRTGLEAALSEDFDAILLDLMLPEIN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR ++ +T ++ + KPF + +L+ + +L
Sbjct: 60 GIEVCRRIRREKI-TPIIMMTARDSIIDRVSGLDHGADDYIVKPFAIEELLARLRAVLR 117
>gi|239904806|ref|YP_002951544.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239794669|dbj|BAH73658.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 972
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILLAEDD + L K+GY V + N+G A + E+ F L+L D+ MP MDG+
Sbjct: 845 RRILLAEDDALSSLTCKRMLEKSGYSVAAANDGQKALQLLTEQDFDLILMDVQMPVMDGV 904
Query: 63 ELARRATEL-----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E + + ++ +T +A A ++KP LV V R+
Sbjct: 905 EATKAIRGSSILGVKSSIPIVAMTAYAMSGDKEKFLASGMDDYIAKPVDKEALVEVVERV 964
Query: 118 LTIK 121
L +K
Sbjct: 965 LRMK 968
>gi|237712721|ref|ZP_04543202.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229447235|gb|EEO53026.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1026
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 780 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 838
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 839 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 898
Query: 121 K 121
+
Sbjct: 899 R 899
>gi|254410208|ref|ZP_05023988.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196183244|gb|EDX78228.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 218
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 46/112 (41%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
EDD+ + L + L Y + ++G + + L+L DI++P++DGI L RR
Sbjct: 2 EDDERITDALEEDLTDQHYAIDVAHDGEEGLNLADSVTYDLILLDIMLPKIDGIALCRRL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +T + L KPF L +L + LL
Sbjct: 62 RSQGCSTPILMLTAKDTITDKVVGLDAGADDYLVKPFDLEELSARIRALLRR 113
>gi|188585544|ref|YP_001917089.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350231|gb|ACB84501.1| two component transcriptional regulator, winged helix family
[Natranaerobius thermophilus JW/NM-WN-LF]
Length = 234
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
M++ +L+ ED+ + + L L K GY+V + ++G + + +++ +++ D++
Sbjct: 1 MSENTNCYTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P M G E+AR+ + + ++ +T + + KP R+++ +
Sbjct: 61 LPNMSGEEIARKIRKEQ-ETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLK 119
Query: 116 RLLTI 120
+L
Sbjct: 120 TILRR 124
>gi|145220688|ref|YP_001131366.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|145213174|gb|ABP42578.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
Length = 228
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTVVTDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRSR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|222053126|ref|YP_002535488.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
FRC-32]
gi|221562415|gb|ACM18387.1| multi-sensor signal transduction histidine kinase [Geobacter sp.
FRC-32]
Length = 516
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D+ D+ L L AGY +G + + + FSL+L DI MP +DG
Sbjct: 3 NKKILIVDDEPDIALILKLQLEDAGYRTAIARDGVEGLEAIDRDRFSLVLLDIKMPRIDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ R L P++ V+ +T + + ++ ++KPF D++ +V R + +
Sbjct: 63 LQMLERVQNLHPEVAVVMMTAHGSEDIAVEAMKNGALDYIAKPFSTEDVLQKVERAIQL 121
>gi|158319376|ref|YP_001511883.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158139575|gb|ABW17887.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 224
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ + L++ L K Y V NG D + +++ DI++P++ G+E
Sbjct: 2 KVLLVEDEKHLAEALLQILKKNKYTVDGVYNGEDGLDYALTGIYDVIILDIMLPKLSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + V+ L KPF +L+ + L K
Sbjct: 62 ILKSIRKKKISTPVLLLTAKSEVSDRVKGLDLGADDYLPKPFSTEELLARLRALTRRK 119
>gi|15964767|ref|NP_385120.1| transcription regulator protein [Sinorhizobium meliloti 1021]
gi|307309654|ref|ZP_07589306.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
gi|307319451|ref|ZP_07598878.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|15073945|emb|CAC45586.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Sinorhizobium meliloti
1021]
gi|306894823|gb|EFN25582.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306899866|gb|EFN30489.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
Length = 223
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L AL +AGY V +G + EP+ ++ DI +PEMDGI
Sbjct: 2 RILIVEDDTNLNRQLADALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118
>gi|325270713|ref|ZP_08137308.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
multiformis DSM 16608]
gi|324986959|gb|EGC18947.1| DNA-binding response regulator/sensor histidine kinase [Prevotella
multiformis DSM 16608]
Length = 954
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D+ ++ Y+V +NG + + L++TD++MP MDG+E
Sbjct: 705 RLLVIEDNRDIAAYIGSLFADR-YDVSYASNGKEGMEMALDLMPDLIITDLMMPGMDGLE 763
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E+ + ++ +T + KPF+ +L V +LL
Sbjct: 764 VCRQVRGNEIINHIPIIVVTAKITEEERIRGLEAGADAYIVKPFNADELRTRVEKLLDR 822
>gi|225626512|ref|ZP_03784551.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
ceti str. Cudo]
gi|225618169|gb|EEH15212.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
ceti str. Cudo]
Length = 255
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 28 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 87
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 88 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 147
Query: 117 LLTIKN 122
+L N
Sbjct: 148 MLRRAN 153
>gi|225376547|ref|ZP_03753768.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
16841]
gi|225211584|gb|EEG93938.1| hypothetical protein ROSEINA2194_02189 [Roseburia inulinivorans DSM
16841]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ + L + G+ V+ +G A + ++ LL+ D++MP++DGI
Sbjct: 2 QTILVCDDDKEIVEAIEIYLQQEGFHVLKAYDGEEALEILKNNEVHLLIMDVMMPKLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + + KPF+ +LV V L
Sbjct: 62 RATLKIRE-NSSIPIIILSAKTEDSDKILGLNIGADDYVEKPFNPLELVARVKSQLRR 118
>gi|298493029|ref|YP_003723206.1| response regulator receiver protein ['Nostoc azollae' 0708]
gi|298234947|gb|ADI66083.1| response regulator receiver protein ['Nostoc azollae' 0708]
Length = 121
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED R + L +G V +G A + ++ P L++ DIVMP M+
Sbjct: 1 MS-TVLIVEDSIAQREMITDLLKASGLTVTHAGDGVEALEAIQSTPPDLVVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL RR ++ V+ + ++KPF +LV V +LL
Sbjct: 60 GYELCRRLKSDPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|148253267|ref|YP_001237852.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146405440|gb|ABQ33946.1| two component transcriptional regulator, winged helix family
[Bradyrhizobium sp. BTAi1]
Length = 243
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L GY V + + + A K+ F LL+ D++MP G +
Sbjct: 22 HLLLVDDDRRIRDLLSRFLRGEGYRVTTAASASDARAKLTGLHFDLLILDVMMPGESGFD 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR + ++ +T A + ++KPF R+L + +L
Sbjct: 82 LARFIRTQ-SSVPIVMLTARAEPDSRIEGLQLGADDYVAKPFEPRELALRIGNILKR 137
>gi|323704591|ref|ZP_08116169.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323536053|gb|EGB25826.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 222
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED++ MR L L K ++ + +G++ + + F ++L D+++P+M G
Sbjct: 3 KVLVIEDEEGMRDILKTYLEKNNFDALFAEDGSTGINMFKNNSFDIVLLDVMLPDMSGWN 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + VM IT + + KPF R+++ + +L+
Sbjct: 63 VLKTIRE-SSKIPVMMITARSEEYDRLLGFELGADDYVVKPFSPREVIARIKAILSR 118
>gi|296117303|ref|ZP_06835893.1| two component transcriptional regulator, winged helix family
protein [Gluconacetobacter hansenii ATCC 23769]
gi|295976069|gb|EFG82857.1| two component transcriptional regulator, winged helix family
protein [Gluconacetobacter hansenii ATCC 23769]
Length = 239
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L + V + +G K + L++ D+++P G++
Sbjct: 6 HILIVDDDREIRELLARFLERNELRVTTARDGQETRRKWTGGHYQLVILDLMLPGESGLD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+AR D+ ++ +T + + KPF+ R+L+ V +L N
Sbjct: 66 VARWLRTQ-ADVPIIMLTAMSDDTDRIIGLELGADDYVPKPFNPRELLARVRAVLRRVN 123
>gi|284048297|ref|YP_003398636.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
gi|283952518|gb|ADB47321.1| two component transcriptional regulator, winged helix family
[Acidaminococcus fermentans DSM 20731]
Length = 226
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLAED+ M L L +G +V +G +A DK R+ + ++ DI+MP DGI
Sbjct: 2 KVLLAEDEKAMSMALCAVLEHSGCQVDPVYDGQAAVDKARQNIYDAMIFDIMMPVKDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ V+ +T A V L+KPF + +L+ + L +
Sbjct: 62 ALTELRQEGDRTPVIMLTAKAEVDDRITGLDAGADDYLTKPFAMGELLARLRSLTRRQ 119
>gi|224537465|ref|ZP_03678004.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
14838]
gi|224520903|gb|EEF90008.1| hypothetical protein BACCELL_02344 [Bacteroides cellulosilyticus DSM
14838]
Length = 1390
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ DMR ++ L Y + +G A + V++ L+++D++MP MDG
Sbjct: 1138 KETILIVEDNKDMRSYIRTLLVG-DYRLFEAGDGQEALEIVQKHTVDLIVSDLMMPVMDG 1196
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL+RR E + + +T + S + L KPF L + +L+
Sbjct: 1197 MELSRRIKENLATSHIPFLMLTALRSDVQEKRSFEIGVDEYLCKPFDEEVLRLRIRNILS 1256
Query: 120 IK 121
++
Sbjct: 1257 LR 1258
>gi|78213360|ref|YP_382139.1| two component transcriptional regulator [Synechococcus sp. CC9605]
gi|78197819|gb|ABB35584.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. CC9605]
Length = 255
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L +DD ++R+ + L GY+V S + ++ + L++ D+++P DG+
Sbjct: 21 IWLVDDDPELRKMVGTYLIDQGYDVRSLCDVKQFEARLECQRPDLVVLDLMLPGDDGLTA 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + DL V+ +T A L+KPF R+L + +L +N
Sbjct: 81 LRRLRDAGDDLPVVMLTARADGVDRIIGLEQGADDYLAKPFLPRELTARIEAVLRRRN 138
>gi|302343588|ref|YP_003808117.1| multi-sensor signal transduction histidine kinase [Desulfarculus
baarsii DSM 2075]
gi|301640201|gb|ADK85523.1| multi-sensor signal transduction histidine kinase [Desulfarculus
baarsii DSM 2075]
Length = 483
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +R+ + + L G V+ NG +++ + L+L D++MP MDG+E
Sbjct: 8 RILVVDDEERIRQAVRRVLETMGMVVMEAANGREGLERIADYKPDLVLVDLMMPVMDGME 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RA + L + ITG+A + ++ L+KPF ++L + R+L
Sbjct: 68 MIGRARKSHASLAFVVITGYATLEKAVEAMKQGADDFLAKPFKPQELRLVIERVLKR 124
>gi|253567761|ref|ZP_04845172.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251841834|gb|EES69914.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1420
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ DMR ++ L + Y V+ NG A + P +++D++MP MDGIEL+
Sbjct: 1170 LVVEDNADMRGYIRSILREQ-YHVLEAANGEEALHILNSNPIDFIISDLMMPVMDGIELS 1228
Query: 66 RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + + +T + +S + L KPF L+ + +L +
Sbjct: 1229 RRVKETFAISHIPFLMLTAKTSQEARLESYRMGVDEYLLKPFDETLLLTRIQNILENR 1286
>gi|239905562|ref|YP_002952301.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
magneticus RS-1]
gi|239795426|dbj|BAH74415.1| KDP operon transcriptional regulatory protein KdpE [Desulfovibrio
magneticus RS-1]
Length = 231
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ +RRFL L GY VV G A + ++L D+ +P+MDG
Sbjct: 5 KKTILIVDDEPPIRRFLTPFLEAEGYAVVEAGLGREALSLIASHEPDVILLDLGLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R + KV+ ++ A + + L+KPF L +L + L
Sbjct: 65 EELLRAL-PMWVRAKVIVLSVRARERDKVTALDLGASDYLTKPFSLAELAARIRVCLRR 122
>gi|258651433|ref|YP_003200589.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258554658|gb|ACV77600.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 240
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74
R L + L + G++V+ +G + VR L++ D+++P MDG+++ R
Sbjct: 16 REVLRRYLTRDGHDVLEAADGPTGLRLVRSHHPDLIVLDLMLPGMDGLQVCREVR-RTST 74
Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T + + KPF R+L V+R+L
Sbjct: 75 VPVIMLTALGQESDRVVGLEFGADDYVVKPFSPRELALRVSRVLQR 120
>gi|256423097|ref|YP_003123750.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
gi|256038005|gb|ACU61549.1| two component transcriptional regulator, winged helix family
[Chitinophaga pinensis DSM 2588]
Length = 230
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + K+LL ED+ + + + L G+++ NG +++ L + DI+MP
Sbjct: 1 MKKIKLLLVEDEIVLAGVVKETLEANGFQISHAENGQQGWEQYLSFRPELCVVDIMMPRK 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L + +D ++F+T + + KPF + +L+ + LL
Sbjct: 61 DGLSLVKDIRSVDEQTPIIFLTAKSETQDVIKGLQTGADDYIKKPFSIEELILRIKTLLK 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|160888601|ref|ZP_02069604.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
gi|156861915|gb|EDO55346.1| hypothetical protein BACUNI_01018 [Bacteroides uniformis ATCC 8492]
Length = 1343
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+D +R L YEV++ +GA VR E +++++D+VMP M G
Sbjct: 1079 DAKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1137
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ + V+ +T A+ N + ++KPF+ L++ N L+
Sbjct: 1138 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVN 1197
Query: 120 IK 121
+
Sbjct: 1198 SR 1199
>gi|148257074|ref|YP_001241659.1| sensor histidine kinase [Bradyrhizobium sp. BTAi1]
gi|146409247|gb|ABQ37753.1| putative sensor histidine kinase with multiple PAS and a response
regulator receiver domain [Bradyrhizobium sp. BTAi1]
Length = 1299
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++LA+D+ DMR ++ + LG+ YEV + +G +A + +R L+LTD++MP MDG
Sbjct: 646 RVVLADDNPDMRDYVRRLLGQ-DYEVEAVGDGGAALEAMRRRRPDLVLTDVMMPGMDGFG 704
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + D+ V+ ++ A + + LSKPF R+L+ V
Sbjct: 705 LLQAMRSDPRLRDIPVVMLSARAGEEAKVEGLDAGASDYLSKPFSARELLARVRA 759
Score = 106 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62
+L+ ED+ ++ F + L GY V +G A + + P F L+L+D+VMP MDG+
Sbjct: 1174 VLVVEDNPEIGEFSTQLLEDLGYRTVLARSGIDALRMLDDNPKRFDLVLSDVVMPGMDGV 1233
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + P + ++ +G++ V D + ++ KP+ + +L + +++ +
Sbjct: 1234 TLGQEIRRRLPTIPIVLNSGYSDV--LADGGRHGFS-LIHKPYSVDELSRVLRQVMAGR 1289
>gi|300865377|ref|ZP_07110187.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
gi|300336628|emb|CBN55337.1| two-component hybrid sensor and regulator [Oscillatoria sp. PCC
6506]
Length = 424
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L L G+EV +G + P L++ D +MP +DG+E
Sbjct: 3 KILVIDDDVTVQIVLQDLLESEGHEVAIAFDGQDGLSQAHHRPPDLIICDWMMPYIDGLE 62
Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ +P+L + +T + LSKP +L+ V L +
Sbjct: 63 VCRQLKA-NPELATVFFILLTAREELDDRVKGLDNGADDFLSKPIETEELLARVRAGLRL 121
Query: 121 K 121
+
Sbjct: 122 R 122
>gi|300790441|ref|YP_003770732.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299799955|gb|ADJ50330.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + L G+ + G + E + +++ DI++PE+ G E
Sbjct: 2 RLLIVEDEREFAETLRRGLVAEGFTADVAHTGREGLWRATEHAYDVVVLDIMLPELSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ +T D+ LSKPF L+ + LL
Sbjct: 62 VLKRLRAAENWTPVLMLTAKDGEYDEADAFDLGADDYLSKPFSFVVLIARLRALLRR 118
>gi|262368892|ref|ZP_06062221.1| transcriptional regulator [Acinetobacter johnsonii SH046]
gi|262316570|gb|EEY97608.1| transcriptional regulator [Acinetobacter johnsonii SH046]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ EDD + L ++VV NNG ++++ PF ++L D+ +P MD
Sbjct: 1 MS-KILIIEDDFMIAESTQTLLRYQQFDVVWVNNGFDGLKQLQQYPFDVVLLDLGLPMMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + L P L V+ I+ + D L KP+ +L+ ++ LL
Sbjct: 60 GMQVLKNIRSLYPTLPVLIISARDQLQNRVDGLNHGADDYLIKPYEFDELLARIHALLRR 119
>gi|262370815|ref|ZP_06064139.1| positive response regulator for the pho regulon [Acinetobacter
johnsonii SH046]
gi|262314177|gb|EEY95220.1| positive response regulator for the pho regulon [Acinetobacter
johnsonii SH046]
Length = 236
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DGIE 63
IL+ +D+ +R + +L AG++ + + A+ + ++ +L+L D +MP G++
Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMMPGGVSGVD 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR E ++ V+ +T ++KPF R+LV+ + +L
Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|254788255|ref|YP_003075684.1| transcriptional regulator [Teredinibacter turnerae T7901]
gi|237687195|gb|ACR14459.1| two component transcriptional regulator, winged helix family
[Teredinibacter turnerae T7901]
Length = 231
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63
ILL +DD ++ + + L G+ V ++G SA ++ P L++ DI+MP + G++
Sbjct: 7 ILLVDDDQELCDLIGEYLTAEGFAVDKAHSGQSALTRLASPPECQLIVLDIMMPGLSGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ +TG L+KP + R+LV V +L
Sbjct: 67 VLQRLRPSNS-TPVIMLTGRGDDIDRILGLEMGADDYLAKPCNPRELVARVRAILRR 122
>gi|255037400|ref|YP_003088021.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254950156|gb|ACT94856.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD ++ L + L G+ +G + ++ + L + D++MP+ DG LA
Sbjct: 5 LLVEDDANLGMLLQEYLTDKGFPTDLATDGQKGWQHFVDKQYDLCIFDVMMPKKDGFSLA 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++F+T + ++KPF +L+ + +L
Sbjct: 65 KEVRMSGRDVPIIFLTAKSMKEDTMQGFRVGADDYVTKPFDREELLMRIQAILRR 119
>gi|226322402|ref|ZP_03797920.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
gi|225209202|gb|EEG91556.1| hypothetical protein COPCOM_00170 [Coprococcus comes ATCC 27758]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y V+ G A + + + L + D+++P++D
Sbjct: 1 MN--ILVVDDEKEIADVVELYLQNE-YHVLKFYTGQEALECIEKTNVDLAILDVMLPDID 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ E V+ +T + KPF+ +LV V +
Sbjct: 58 GFTILRKIREKY-TFPVIMLTAKTEYRDKITGLTMGADDYIPKPFNPLELVARVKAQMRR 116
>gi|198242939|ref|YP_002215027.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|197937455|gb|ACH74788.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|326622781|gb|EGE29126.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|311747392|ref|ZP_07721177.1| sigma-54 dependent DNA-binding response regulator CrdA
[Algoriphagus sp. PR1]
gi|126574677|gb|EAZ79064.1| sigma-54 dependent DNA-binding response regulator CrdA
[Algoriphagus sp. PR1]
Length = 385
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ +R L + L ++V +GA K+ EE F L+L D+ MP+MD
Sbjct: 1 MS-KILIIDDEKVIRATLREILEYEKFDVTEAQDGAEGLSKLTEEDFDLVLCDVKMPKMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ +A L + + I+ ++ ++ + KP L L+ V L
Sbjct: 60 GIEVLEKAKALVKSPQFIMISAHGSIETAVEATKKGAFDFIPKPPDLNRLLLTVRNALEK 119
Query: 121 KN 122
KN
Sbjct: 120 KN 121
>gi|150395854|ref|YP_001326321.1| two component transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150027369|gb|ABR59486.1| two component transcriptional regulator, winged helix family
[Sinorhizobium medicae WSM419]
Length = 223
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L +AL +AGY V +G + EP+ ++ DI +PEMDGI
Sbjct: 2 RILIVEDDTNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAVILDIGLPEMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRR 118
>gi|313835591|gb|EFS73305.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA2]
gi|314928691|gb|EFS92522.1| response regulator receiver domain protein [Propionibacterium acnes
HL044PA1]
gi|314970292|gb|EFT14390.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA3]
gi|328908152|gb|EGG27911.1| response regulator [Propionibacterium sp. P08]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ R L K G+EV + +G+ + ++L D++MP +
Sbjct: 1 MT-RVLIIEDEESYREATAFMLRKEGFEVDTATSGSDGLETYSRNGADIVLLDLMMPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + +++++ +T + ++KPF R+LV + +
Sbjct: 60 GTEVCRQLRQRG-NVRIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRR 118
>gi|326777882|ref|ZP_08237147.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|326658215|gb|EGE43061.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 250
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +RR + AL + GY V +G + R LL+ D+++PE+DGI L
Sbjct: 21 VLVVEDDATIRRAVQLALERYGYRVDVAADGLGGLEAFRAGAHDLLILDVMLPELDGIGL 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E P + V+ ++ + KP +V + LL
Sbjct: 81 CRRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTGVMVARIRALLRR 135
>gi|283786785|ref|YP_003366650.1| transcriptional regulator [Citrobacter rodentium ICC168]
gi|282950239|emb|CBG89875.1| transcriptional regulator [Citrobacter rodentium ICC168]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSESYALAVLDINMPGIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNAGADDYLPKPFELEELDARLRALLRR 118
>gi|317151756|ref|YP_004119804.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942007|gb|ADU61058.1| PAS sensor protein [Desulfovibrio aespoeensis Aspo-2]
Length = 1095
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ R + + L G+ V + NNG A + +PF + DI MP M+G++
Sbjct: 972 RLLVVEDNRVNRLMVARMLTMMGHAVETANNGEEALKTLETQPFDAVFMDIQMPGMNGVQ 1031
Query: 64 LARRATE------LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR E +DP + V+ IT A ++KP L +L + RL
Sbjct: 1032 ATRRIREADQGSGIDPAIPVIAITAHAMAGDREIFLEGGMDDYIAKPVELTELEAVLARL 1091
Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED + R + L +G+ V NG + D FS +L D+ +P+MDG+
Sbjct: 5 HILIIEDSPEFARLVAHHLEASGFSVHLAENGRAGLDAFGGRRFSAVLLDLQLPDMDGLA 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + + ++ ++G + + + K ++ E++ L
Sbjct: 65 VLADMADRSDSIPLIVVSGSNGIEDAVQAVRRGAWDFVVK---GEAVLAELDHAL 116
>gi|229005054|ref|ZP_04162778.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228756156|gb|EEM05477.1| Two-component response regulator [Bacillus mycoides Rock1-4]
Length = 238
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ ++ L L G+ ++ +G SA + +++ L + DI+MP ++
Sbjct: 1 MVRTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + + ++ ++ +SKPF L +++ + L
Sbjct: 61 GYELIKIVRKEYK-MPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRR 119
>gi|170783046|ref|YP_001711380.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
gi|169157616|emb|CAQ02814.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. sepedonicus]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I+L ED+ + L L + GYEV +G +A ++ L+L D+++P + G E
Sbjct: 3 RIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVAAFEKDGTDLILLDLMLPGLPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCREIR-TRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRR 119
>gi|83952004|ref|ZP_00960736.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius nubinhibens ISM]
gi|83837010|gb|EAP76307.1| phosphate regulon transcriptional regulatory protein PhoB
[Roseovarius nubinhibens ISM]
Length = 221
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L ED+ R L L G+EV + NG A V E +++ D ++P + GIE+
Sbjct: 1 MLVEDEPAQRDILTYNLEADGFEVAAAENGEEALLLVDEVSPDIIVLDWMLPNVSGIEVC 60
Query: 66 RRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ ++ + + KP+ + +L+ V L
Sbjct: 61 RQLKSRSDTRGVPIIMLSARSEEVDRVRGLETGADDYVVKPYSVAELMARVRAQLRR 117
>gi|283769507|ref|ZP_06342403.1| response regulator receiver domain protein [Bulleidia extructa
W1219]
gi|283103775|gb|EFC05161.1| response regulator receiver domain protein [Bulleidia extructa
W1219]
Length = 222
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ +R + GY V +NG A +K++ L++ D++MPE+DG
Sbjct: 3 TILIVDDEEKIRFLIDTYAKHEGYLTVLASNGLEALEKLKMHSIDLVVMDVMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L P+L V+ +T + KPF + L+ + +L
Sbjct: 63 ALEKMKALQPNLPVILLTALGQEYDKVHGFELGVDDYVEKPFSPKVLLLRMRAILQR 119
>gi|281491496|ref|YP_003353476.1| Two-component response regulator [Lactococcus lactis subsp. lactis
KF147]
gi|281375214|gb|ADA64727.1| Two-component response regulator [Lactococcus lactis subsp. lactis
KF147]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
M+ +L+ ED+ + ++ K L Y+V + +G SA + ++L D ++P+
Sbjct: 1 MSYHVLIVEDEPSLSDYVKKELIFEDYQVSTAFDGLSALEIFETAKPAIDVVLLDWMIPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+DG+ + RR ++ D ++F+T + ++KPF + +L+ +
Sbjct: 61 LDGLTVLRRMKKIQADTPIIFLTARDYIGDKVAGLDAGADDYITKPFEIEELLARLR 117
>gi|256371502|ref|YP_003109326.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
gi|256008086|gb|ACU53653.1| two component transcriptional regulator, winged helix family
[Acidimicrobium ferrooxidans DSM 10331]
Length = 236
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++++ L + L G+ V + ++G + D R P+ ++ DI++P ++G +
Sbjct: 2 RLLIVDDEENLLASLKRGLSAEGFAVDTASDGTTGLDMARHAPYDCIVLDIMLPGVNGFK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ +T ++ VL KPF LV + LL
Sbjct: 62 FTQLLREERNWTPILMLTAKDGEYDEAEALDTGADDVLKKPFSFTVLVARIRALLRR 118
>gi|168182546|ref|ZP_02617210.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|182674404|gb|EDT86365.1| DNA-binding response regulator [Clostridium botulinum Bf]
Length = 230
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + E+ L++ DI+MP MDGI+
Sbjct: 5 KVLIVDDEDEIREAIEIYLRNEGITVFKAKDGIDALMLLEEKDIHLIIMDIMMPRMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV + L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYITKPFNMLELVARIKSQLRR 120
>gi|145225002|ref|YP_001135680.1| multi-sensor signal transduction histidine kinase [Mycobacterium
gilvum PYR-GCK]
gi|145217488|gb|ABP46892.1| PAS/PAC sensor hybrid histidine kinase [Mycobacterium gilvum
PYR-GCK]
Length = 1361
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D+ DMR +L + L GY V + +G A + +R EP L+++D++MP +DG+
Sbjct: 605 RVLVADDNADMREYLGRLLRSDGYAVEAVVDGWQALEAIRAEPPDLVISDVMMPRLDGLG 664
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L + V+ ++ A + L KPF +L+ V
Sbjct: 665 LVAELRADRRTAAVPVLLLSARAGQEASISGLQAGADDYLVKPFAAAELLARVRA 719
>gi|71907879|ref|YP_285466.1| two component heavy metal response transcriptional regulator
[Dechloromonas aromatica RCB]
gi|71847500|gb|AAZ46996.1| two component heavy metal response transcriptional regulator,
winged helix family [Dechloromonas aromatica RCB]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ V +G E + L + D+++P +DG +
Sbjct: 2 KILVVEDEQKTGDYLRQGLMEAGFIVDLARDGFDGLHLALTEAYDLAVLDVMLPGIDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+F+T V L KPF +L+ V LL
Sbjct: 62 VLQGIRRAGKDMPVLFLTARDDVEDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|78222245|ref|YP_383992.1| two component transcriptional regulator [Geobacter metallireducens
GS-15]
gi|78193500|gb|ABB31267.1| two component transcriptional regulator, winged helix family
[Geobacter metallireducens GS-15]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 47/117 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ M L K L + + V +G P+ +L DI++P MDG+
Sbjct: 2 KILIIEDEKRMAGILKKGLEENAFIVDLAGDGEEGLYMAENYPYDAVLLDIMLPVMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+ IT + + KPF +L+ + ++
Sbjct: 62 ILSALRSKRSEVPVLLITARGEIESRIKGLNFGADDYIVKPFDFHELLARLKSVIRR 118
>gi|22299981|ref|NP_683228.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22296166|dbj|BAC09990.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 163
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I++ +D +R +++ + + GY+VV +G A +K++ + L++ D+VMP M+G E
Sbjct: 46 TIMVVDDSPTLRAMIVELMKEQGYDVVEAEDGIEAQEKIKAQCPDLVILDVVMPRMNGYE 105
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L R + + V+ T + ++KPF +LV V +LL
Sbjct: 106 LCRWIKGEAVSQKVPVIMCTTKSEEFDIHWGKKQGVDAYITKPFDPAELVASVKQLL 162
>gi|332291405|ref|YP_004430014.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
gi|332169491|gb|AEE18746.1| two component transcriptional regulator, winged helix family
[Krokinobacter diaphorus 4H-3-7-5]
Length = 227
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 62/117 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAED+ + + ++L G+ V C +G A ++ + + +L+ D++MP+ DG +
Sbjct: 8 ILLAEDEPALGLIVKESLESRGFNVTLCTDGVQAINQYQLKKPDILVLDVMMPKKDGFTV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
A+ E D ++ ++F+T + A + + L KPF + +L+ + LL K
Sbjct: 68 AKEVREQDDEIPIIFLTAKSQTADVVEGFSIGGNDYLKKPFSVEELIVRIQNLLQRK 124
>gi|317493397|ref|ZP_07951818.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918340|gb|EFV39678.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 236
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL +DD ++R L + +AG+ V++ +G ++++ L++ D++MP MDG L
Sbjct: 8 LLIDDDAEIRSLLTEYFTRAGFSVIALPDGEKLMQTLQQQSVDLIILDVMMPGMDGFTLC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T + L+KPF R+L+ V LL
Sbjct: 68 RMVRN-TSSVPIIMLTAASDETDKVIGLELGADDYLAKPFSARELLARVKALLRR 121
>gi|316934907|ref|YP_004109889.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris DX-1]
gi|315602621|gb|ADU45156.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris DX-1]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|227496786|ref|ZP_03927057.1| response regulator [Actinomyces urogenitalis DSM 15434]
gi|226833702|gb|EEH66085.1| response regulator [Actinomyces urogenitalis DSM 15434]
Length = 234
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-------EPFSLLLTDIVM 56
+ILL ED+++ R L L + GY+VV +GA A + E EP L+L D+++
Sbjct: 3 RILLVEDEENYREPLAFNLRRDGYDVVEAEDGAVAVELFEEAGRPGGGEPIDLVLLDLML 62
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P + G E+ RR ++ V+ +T + ++KP+ R+LV V+
Sbjct: 63 PRLSGTEVCRRIR-RSSNVPVIMLTAKDSEVDKIVGLEIGADDYVTKPYSYRELVARVHA 121
Query: 117 LLTI 120
+L
Sbjct: 122 VLRR 125
>gi|254524029|ref|ZP_05136084.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
SKA14]
gi|219721620|gb|EED40145.1| transcriptional regulatory protein KdpE [Stenotrophomonas sp.
SKA14]
Length = 237
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY+V G E L++ DI +P+M+G E
Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + V+ +T A A + ++KPF ++L+ V LL ++
Sbjct: 74 VLEQLRQ-WSQVPVIMLTVRAGEAEKVRALDTGANDYVTKPFGTQELMARVRALLRTRS 131
>gi|197285448|ref|YP_002151320.1| DNA-binding transcriptional regulator BaeR [Proteus mirabilis
HI4320]
gi|227355932|ref|ZP_03840324.1| two-component system response regulator [Proteus mirabilis ATCC
29906]
gi|194682935|emb|CAR43323.1| two-component system response regulator [Proteus mirabilis HI4320]
gi|227163920|gb|EEI48822.1| two-component system response regulator [Proteus mirabilis ATCC
29906]
Length = 235
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + LI L + Y+ +G +++ + L+L D+++P DGI L
Sbjct: 10 ILIVEDEPKLAQLLIDYLQASDYQTQWLADGTEVIQHIKQSHYDLVLLDLMLPGKDGITL 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + KP+ R++V V LL
Sbjct: 70 CKELRQ-FSDIPIIMVTAKTEEVDRLLGLEIGADDYICKPYSPREVVARVKTLLRR 124
>gi|16132215|ref|NP_418815.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K-12 substr. MG1655]
gi|89111106|ref|AP_004886.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K-12 substr. W3110]
gi|170083784|ref|YP_001733104.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K-12 substr. DH10B]
gi|238903485|ref|YP_002929281.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli BW2952]
gi|312970092|ref|ZP_07784274.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
gi|117433|sp|P08368|CREB_ECOLI RecName: Full=Transcriptional regulatory protein CreB
gi|147250|gb|AAA24374.1| 28 kd protein [Escherichia coli]
gi|537238|gb|AAA97294.1| creB [Escherichia coli str. K-12 substr. MG1655]
gi|1790860|gb|AAC77351.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K-12 substr. MG1655]
gi|85677137|dbj|BAE78387.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K12 substr. W3110]
gi|169891619|gb|ACB05326.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli str. K-12 substr. DH10B]
gi|238860860|gb|ACR62858.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli BW2952]
gi|260450790|gb|ACX41212.1| two component transcriptional regulator, winged helix family
[Escherichia coli DH1]
gi|310337590|gb|EFQ02701.1| transcriptional regulatory protein creB [Escherichia coli 1827-70]
gi|315138952|dbj|BAJ46111.1| DNA-binding response regulator CreB [Escherichia coli DH1]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARKQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|258593550|emb|CBE69891.1| response regulator in two-component regulatory system with PhoR (or
CreC), regulation of Pi uptake (OmpR family) [NC10
bacterium 'Dutch sediment']
Length = 246
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD + LI L + G+ V+ +G ++L DI++P++ G+E
Sbjct: 7 TVLLIEDDASIAEPLIFGLRREGFHVLHAGDGLQGKALALTAKPDVVLLDIMLPKLSGLE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T + KPF ++LV + +L +
Sbjct: 67 VCELIRRE-SVVPIVMLTAKGQELDRVRGLQGGADDYIVKPFSFQELVARIQAILRRR 123
>gi|187779726|ref|ZP_02996199.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
15579]
gi|187773351|gb|EDU37153.1| hypothetical protein CLOSPO_03322 [Clostridium sporogenes ATCC
15579]
Length = 234
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + ++ L++ DI+MP+MDGI+
Sbjct: 9 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 69 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 124
>gi|167763747|ref|ZP_02435874.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
43183]
gi|167697863|gb|EDS14442.1| hypothetical protein BACSTE_02127 [Bacteroides stercoris ATCC
43183]
Length = 227
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ M L + L ++G+ V + N + E ++++DI++P+ G +
Sbjct: 3 KILVIEDENRMAELLKRGLEESGHTVGTATNVSEGLRMFAYEKQDIIISDIMLPDGSGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ +T + + KPF R+L ++ LL
Sbjct: 63 LCRDIRRQNETVPILILTALGTTDDKLEGFDSGADDYMVKPFDFRELNARISILLKR 119
>gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT
9515]
Length = 242
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ +R + L G+E+ +G ++K + L+++DI+MP +G
Sbjct: 16 KILLVDDEPGLRTAVKTFLEDEGFEISIAVDGEDGWEKAQTIFPDLIISDIMMPRSNGYA 75
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + V+F+T ++KPF +L V ++ +
Sbjct: 76 LLEKIREDEKLGGTPVIFLTAKGMTLDRTQGYLAGIDDYIAKPFDPDELSARVKNVINRQ 135
>gi|186685422|ref|YP_001868618.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186467874|gb|ACC83675.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 462
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D D R L L G+EV NG A + ++L DI MP MDG
Sbjct: 10 KKNILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMVLPDVILLDINMPGMDG 69
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ ++ D ++ V+FI+ V + ++KPFH ++V + +
Sbjct: 70 YQVCQQLKADDKTCEVPVIFISALDDVVDKVKAFDVGGVDYIAKPFHGAEVVLRIENQIN 129
Query: 120 IK 121
++
Sbjct: 130 LR 131
>gi|319654045|ref|ZP_08008137.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
gi|317394238|gb|EFV74984.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ ILL +D+ M L L GY V ++ A V L+L D++MPEMDG
Sbjct: 2 KTILLVDDETRMLDLLALYLMPLGYYCVKKSSAIDAILYVESHSVDLILLDVMMPEMDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + + KPF +L+ + +L
Sbjct: 62 TACKEIKKFR-DIPIIMLTARSEKPDIVKGLKMGADDYILKPFDEEELLARIEAVLRR 118
>gi|221633806|ref|YP_002523032.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
gi|221156904|gb|ACM06031.1| phosphate regulatory protein [Thermomicrobium roseum DSM 5159]
Length = 253
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ EDD + + L +L + GY V + G A R L++ D+++P +DG
Sbjct: 19 QRILIVEDDPTLAQILSYSLEQRGYSVWTAQEGRHAIMLARTIRPDLIILDLMLPGIDGR 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ +T + + KPF R+L ++ LL
Sbjct: 79 DVCRLIRK-WSSAPILVLTARDSEDDIVALFQEGADDYVVKPFRTRELFARIDALLRR 135
>gi|328553275|gb|AEB23767.1| yvrH [Bacillus amyloliquefaciens TA208]
gi|328911939|gb|AEB63535.1| Transcriptional regulatory protein yvrH [Bacillus amyloliquefaciens
LL3]
Length = 235
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M+Q K+L+ +D+ ++ + L + G V++ + + +E L++ DI++
Sbjct: 1 MSQTQSKVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ A ++KPF +++ V
Sbjct: 61 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 119
Query: 117 LLTIKN 122
L +
Sbjct: 120 QLRRSS 125
>gi|328952706|ref|YP_004370040.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
gi|328453030|gb|AEB08859.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfobacca acetoxidans DSM 11109]
Length = 449
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 60/113 (53%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R L L + GYEV + +G +A+ ++E + ++L D+ MP MDG+ L
Sbjct: 9 ILVVDDELSIRESLSGWLQQDGYEVATAADGIAAWAMIQENRYDIMLIDVKMPRMDGLSL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ E D V+ +T + ++ +S L KPF L +L + +L
Sbjct: 69 LKKLRENDHTEAVVMMTAYGSIRDAVESMRLGAYDYLLKPFELEELSLTIEKL 121
>gi|294619272|ref|ZP_06698744.1| regulatory protein VanR [Enterococcus faecium E1679]
gi|291594492|gb|EFF25897.1| regulatory protein VanR [Enterococcus faecium E1679]
Length = 233
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ ++ + L GYEV G A D + E F L + D+++P++D
Sbjct: 1 MPDKILLVDDEQEIADLIEVYLKNDGYEVQKFYLGQEALDYIERESFDLAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ E V+ +T ++KPF+ ++V V L
Sbjct: 61 GFKIVQKIRENH-FFPVIMLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARVKTQLRR 119
>gi|288935482|ref|YP_003439541.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
gi|288890191|gb|ADC58509.1| two component transcriptional regulator, winged helix family
[Klebsiella variicola At-22]
Length = 231
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD D L L + Y+VV +G S D L+L D+++P ++G
Sbjct: 3 SRRVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + D+ V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLAGLRRKN-DVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|260439186|ref|ZP_05793002.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
2876]
gi|292808388|gb|EFF67593.1| DNA-binding response regulator VicR [Butyrivibrio crossotus DSM
2876]
Length = 223
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 119
>gi|166711394|ref|ZP_02242601.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188575701|ref|YP_001912630.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188520153|gb|ACD58098.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 1 MTGKKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 61 SGIEVLSAIRRA-SDTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|160892089|ref|ZP_02073092.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492]
gi|317480521|ref|ZP_07939613.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|156858567|gb|EDO51998.1| hypothetical protein BACUNI_04552 [Bacteroides uniformis ATCC 8492]
gi|316903313|gb|EFV25175.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R + +L K + V + + SA DK+ + + +L DI++P G++
Sbjct: 2 KILIVEDEQDLRETIRTSLLKEKFVVETAADYFSALDKINDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R +L V+ I+ ++ D L+KPFHL +L V L+ +
Sbjct: 62 LLRELKQLHRSDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVKSLIRRR 119
>gi|152980160|ref|YP_001353976.1| phosphate regulon two-component response regulator
[Janthinobacterium sp. Marseille]
gi|151280237|gb|ABR88647.1| phosphate regulon two-component response regulator
[Janthinobacterium sp. Marseille]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+ + + L AG+ V + N A+D +++ L+L D ++P+ G
Sbjct: 5 KPTILIVEDEPPIIELVTFTLKGAGWNVAAVQNAGDAWDFIQQRLPQLILLDWMLPDQSG 64
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R +L ++ +T + ++KPF R+L +N LL
Sbjct: 65 LRLLSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLR 124
Query: 120 IK 121
K
Sbjct: 125 RK 126
>gi|146282793|ref|YP_001172946.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
gi|145570998|gb|ABP80104.1| DNA-binding response regulator [Pseudomonas stutzeri A1501]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ LI L + G+ +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++G L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
>gi|120401846|ref|YP_951675.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119954664|gb|ABM11669.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVADGPSALAEFERAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRSR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|297625540|ref|YP_003687303.1| two component system response regulator [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|32452353|emb|CAD59399.1| putative two-component system regulatory protein [Propionibacterium
freudenreichii subsp. shermanii]
gi|296921305|emb|CBL55858.1| two component system response regulator [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 242
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L +D++ + L A+ G+E + G+ A R+ ++ D+++P+ DG+E
Sbjct: 19 RVLAVDDENSLTELLSMAMRYEGWEPTTAATGSDAVRAARDTNPDAIVLDMMLPDFDGLE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR PD+ V+F+T AV ++KPF + +L+ + LL
Sbjct: 79 VMRRVRAEQPDVPVIFLTAKDAVNDRIVGLTAGGDDYVTKPFSVEELMARLRSLLRR 135
>gi|39934984|ref|NP_947260.1| two-component transcriptional regulator FeuP [Rhodopseudomonas
palustris CGA009]
gi|192290518|ref|YP_001991123.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
gi|39648835|emb|CAE27356.1| two-component transcriptional regulator FeuP, winged helix family
[Rhodopseudomonas palustris CGA009]
gi|192284267|gb|ACF00648.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris TIE-1]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNSRAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|239905949|ref|YP_002952688.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795813|dbj|BAH74802.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 640
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 64/117 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+K+LL +DD+ +R L ++ GY+V + G A + S++LTDI MP MD
Sbjct: 1 MNEKVLLVDDDEAIREVLSLSIADLGYDVETAPGGREALELCATFKPSIVLTDIKMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIEL R LDP+++V+ I+G + L +S + L+KP L ++R
Sbjct: 61 GIELLSRVKALDPEIEVIMISGHGDMELAIESLKRQALDFLTKPVRDELLTASLHRA 117
>gi|256828439|ref|YP_003157167.1| Fis family two component sigma5-4 specific transcriptional
regulator [Desulfomicrobium baculatum DSM 4028]
gi|256577615|gb|ACU88751.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfomicrobium baculatum DSM 4028]
Length = 446
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ R + L AG++V + A A + + ++++D+ MP
Sbjct: 1 MNRSILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAES 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++L RR P+L + +T +A V D+ L+KP L +L+ V L
Sbjct: 61 GLDLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPVDLDELLAAVRDTL 118
>gi|161353605|ref|NP_460069.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167993660|ref|ZP_02574754.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168264141|ref|ZP_02686114.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|197263478|ref|ZP_03163552.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197241733|gb|EDY24353.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205328288|gb|EDZ15052.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205347397|gb|EDZ34028.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|267992849|gb|ACY87734.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312912084|dbj|BAJ36058.1| transcriptional regulator YedW [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321223711|gb|EFX48774.1| Putative two-component system response regulator YedW [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|323129363|gb|ADX16793.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|149279170|ref|ZP_01885303.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
gi|149230172|gb|EDM35558.1| two-component hybrid sensor and regulator [Pedobacter sp. BAL39]
Length = 1253
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ DMR +L++ L + + + NG A K+ + L+L+D++MP MDG
Sbjct: 647 RILIVDDNHDMRDYLVRLLNPY-FTIDTALNGQDALLKIGAQMPDLVLSDVMMPVMDGKA 705
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R E L V+F++ A D L KPF +L+ +V +
Sbjct: 706 MLERIRSNENTLRLPVIFLSARAGEEARIDGLEMGADDYLVKPFSAAELLTKVRAQI 762
>gi|37520204|ref|NP_923581.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
7421]
gi|35211197|dbj|BAC88576.1| two-component hybrid sensor and regulator [Gloeobacter violaceus PCC
7421]
Length = 1387
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+L+ +DD L AL + G +V+ NG+ + P ++L D++MP MDG
Sbjct: 1264 RKVLIVDDDVRNIFALTSALEREGMQVLYAENGSDGIALLERTPGIDMVLMDVMMPGMDG 1323
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E +L ++ +T A + ++KP L++ + L+
Sbjct: 1324 YEATAAIRRQVRFKELPIVALTAKAMRGDREKCLEAGASDYITKPVDTEQLLSLLRVWLS 1383
Query: 120 IK 121
+
Sbjct: 1384 RR 1385
Score = 84.0 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 1/107 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD + R L G++ V + VR+ +L DI +P MDG +
Sbjct: 999 LIIEDDANFARILGDLARTHGFKAVVALGSETGLAAVRDLQPHAVLLDIHLPGMDGWTVL 1058
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
R DP+ + + + + L KP +
Sbjct: 1059 DRLK-HDPETRHIPVHLLSVDDAGQRGLQSGAVACLKKPVDSEQMAA 1104
Score = 68.6 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ EDD+ R +++ +G + A ++ EPF ++ D+ +P+ DG
Sbjct: 1118 KNLLVIEDDEAQRTSIVELIGGGDVRSQAVATAQEALALLQSEPFDCVVLDLGLPDADGQ 1177
Query: 63 ELARRAT-ELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
L + DP +L V+ TG + V+ K
Sbjct: 1178 ALLGQIKGSADPWNLPVIVYTGRDLTPQQERDLKRRVEAVIVK 1220
>gi|302205664|gb|ADL10006.1| Putative sensor kinase [Corynebacterium pseudotuberculosis C231]
gi|308275899|gb|ADO25798.1| Putative sensor kinase [Corynebacterium pseudotuberculosis I19]
Length = 232
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M QKIL+ +DD + L L G+ V+ +GA A + E L+L D+++P M+
Sbjct: 8 MPQKILVVDDDPAISEMLTIVLEAEGFNTVAVTDGALAVETFNREEPDLVLLDLMLPGMN 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
GI++ R + + + ++ +T ++KPF ++L+
Sbjct: 68 GIDICRLIRQ-NSTVPIVMLTAKTDTVDVVLGLETGADDYITKPFKPKELI 117
>gi|296274651|ref|YP_003657282.1| winged helix family two component transcriptional regulator
[Arcobacter nitrofigilis DSM 7299]
gi|296098825|gb|ADG94775.1| two component transcriptional regulator, winged helix family
[Arcobacter nitrofigilis DSM 7299]
Length = 222
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + FL K L + Y + +NG + L+L DI++P +DGIE
Sbjct: 2 KILIIEDDVKIVNFLKKGLEEESYSIDYSHNGEEGLYLASVNSYDLILLDIMLPLLDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ + ++ +T ++ L KPF +L+ + L K+
Sbjct: 62 VCKKLRAEKINTPIIMLTAKDSIEDTIKGLDIGANDYLPKPFSFSELLARIRVQLRAKD 120
>gi|285017655|ref|YP_003375366.1| two-component system regulatory protein, ompr family [Xanthomonas
albilineans GPE PC73]
gi|283472873|emb|CBA15378.1| probable two-component system regulatory protein, ompr family
[Xanthomonas albilineans]
Length = 236
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD D+RR + + L + GY+V S A + E L++ D++MP D
Sbjct: 1 MKSFILVVDDDPDLRRLISEFLSEHGYQVESAETVAQMRQLMAERQPDLIVLDVMMPGED 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ AR+ V+ ++ + L+KP + R+L+ V LL
Sbjct: 61 GLSAARQLASERGAPAVIMLSALGSDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 120
>gi|258515908|ref|YP_003192130.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257779613|gb|ACV63507.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L G++ +G K + +++ D+++P DG
Sbjct: 2 KRILIIEDDLHIAELERDYLQLNGFKADIVQDGVQGLKKALPGNYDVIIVDLMLPGKDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R E D+ V+ ++ L+KPF +LV + +
Sbjct: 62 EIIREIREKL-DVPVVVVSAKDEDVNKIRGLEYGADDYLTKPFSPGELVARIKSHIRR 118
>gi|153854281|ref|ZP_01995580.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
gi|149753056|gb|EDM62987.1| hypothetical protein DORLON_01575 [Dorea longicatena DSM 13814]
Length = 236
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|148269592|ref|YP_001244052.1| response regulator receiver protein [Thermotoga petrophila RKU-1]
gi|147735136|gb|ABQ46476.1| response regulator receiver protein [Thermotoga petrophila RKU-1]
Length = 122
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD
Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+ +T + + KV+ KPF + EV LL
Sbjct: 61 GFTVLKKLQEKENWKRIPVIVLTAKGGEEDESLAFSLGARKVMRKPFSPSQFIEEVKHLL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|119486865|ref|ZP_01620840.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
8106]
gi|119456158|gb|EAW37291.1| Hybrid signal transduction histidine kinase and
diguanylatecyclase/phosphodiesterase [Lyngbya sp. PCC
8106]
Length = 564
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED+D +R + + L +EV + NG + ++ L+L D++MP+MD
Sbjct: 1 MT-KVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKKTIPDLILCDVMMPKMD 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + + +F+T A L+KP ++L+ + L
Sbjct: 60 GYQVLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARL 119
Query: 119 TI 120
Sbjct: 120 QR 121
>gi|29346338|ref|NP_809841.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|29338233|gb|AAO76035.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + ++L K Y V + + SA K+ + + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLRELIQRSLEKERYVVETAGDFNSALYKIEDYDYDCVLLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ I+ ++ L KPFHL +L + ++
Sbjct: 62 LLERLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKSVIRR 118
>gi|150018635|ref|YP_001310889.1| two component, sigma54 specific, Fis family transcriptional
regulator [Clostridium beijerinckii NCIMB 8052]
gi|149905100|gb|ABR35933.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Clostridium beijerinckii NCIMB 8052]
Length = 472
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 66/123 (53%), Gaps = 2/123 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + ++L+A+D+ +R L AL K GYEV + NG A +E + + + DI MPE
Sbjct: 11 MTESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMAQENHYDVAILDIRMPE 70
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG++ ++ P+L ++ +T F + ++ + KPF+L ++ V+R +
Sbjct: 71 VDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVSRAI 130
Query: 119 TIK 121
++
Sbjct: 131 RMQ 133
>gi|331092529|ref|ZP_08341351.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400750|gb|EGG80353.1| hypothetical protein HMPREF9477_01994 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + L Y + G A D + L L D+++P++D
Sbjct: 1 MN--ILVVDDEREIADVVELYLQSDQYHIFKFYTGQEALDCIDNTKIDLALLDVMLPDID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R E V+ +T + KPF+ +LV V L
Sbjct: 59 GFEILKRIREKY-TFPVIMLTAKIEYMDKITGLTLGADDYIPKPFNPLELVARVKAQLRR 117
>gi|323974270|gb|EGB69399.1| nitrogen regulation protein NR(I) [Escherichia coli TW10509]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|300816027|ref|ZP_07096250.1| response regulator receiver domain protein [Escherichia coli MS
107-1]
gi|300531234|gb|EFK52296.1| response regulator receiver domain protein [Escherichia coli MS
107-1]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R+ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVIILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|290352143|dbj|BAI78782.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L++ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLDRIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|289623551|ref|ZP_06456505.1| sensory box protein/response regulator [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649158|ref|ZP_06480501.1| sensory box protein/response regulator [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867854|gb|EGH02563.1| sensory box protein/response regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 705
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|317048976|ref|YP_004116624.1| winged helix family two component transcriptional regulator
[Pantoea sp. At-9b]
gi|316950593|gb|ADU70068.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
Length = 223
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL + G+ V +G +A ++ E ++L++ D+ +P M+G+E
Sbjct: 2 RLLLVEDTVELAGWLQKALTQKGFAVDWVADGVAADHVLQSEEYALVVLDVTLPRMNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T +A+A L+KPF L +L + LL
Sbjct: 62 VLARLRRRGQQVPVLLLTARSALAQRVQGLNAGADDYLTKPFELDELEARLRALLRR 118
>gi|300779924|ref|ZP_07089780.1| response regulator [Corynebacterium genitalium ATCC 33030]
gi|300534034|gb|EFK55093.1| response regulator [Corynebacterium genitalium ATCC 33030]
Length = 233
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED++ + L L K G+E V +G +A + L+L D+++P M
Sbjct: 1 MTPTILIVEDEESLADPLAYLLRKEGFEAVVAPDGQAALTQFEANNVDLVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ D+ ++ +T ++KP+ R+L+ + +L
Sbjct: 61 GTDVCKKLRA-TSDVPIIMVTARDTEIDKVVGLELGADDYVTKPYSTRELIARIRAVLRR 119
Query: 121 KN 122
++
Sbjct: 120 RS 121
>gi|251793482|ref|YP_003008211.1| CpxR [Aggregatibacter aphrophilus NJ8700]
gi|247534878|gb|ACS98124.1| CpxR [Aggregatibacter aphrophilus NJ8700]
Length = 231
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L + L G+E+ NNG A + + + L+L DI+MP ++GIE
Sbjct: 3 KILLVDDDAELTELLAQLLDLEGFEINVANNGKEALALL-DHSYDLILLDIMMPILNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + VM +T L KPF+ R+LV + +L
Sbjct: 62 TLKQIRKDFS-TPVMMLTARGDDIDRILGLELGADDYLQKPFNDRELVARIKAILRR 117
>gi|37523731|ref|NP_927108.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35214736|dbj|BAC92103.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 246
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L +GYEV+ +G + L++ D+++P++DG+
Sbjct: 3 RVLVIDDDPAILELVAFNLEMSGYEVLEAPDGHKGQAFALQMLPDLIVLDLMLPQVDGLT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ ++ +T + ++KPF + +L+ V LL
Sbjct: 63 ICQRLRRDERTAEIPILMLTALGQIKDKVGGFNAGADDYMTKPFEIEELLVRVRALLRR 121
>gi|28379577|ref|NP_786469.1| response regulator [Lactobacillus plantarum WCFS1]
gi|254557719|ref|YP_003064136.1| response regulator [Lactobacillus plantarum JDM1]
gi|300769515|ref|ZP_07079401.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308181805|ref|YP_003925933.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|28272417|emb|CAD65340.1| response regulator [Lactobacillus plantarum WCFS1]
gi|254046646|gb|ACT63439.1| response regulator [Lactobacillus plantarum JDM1]
gi|300492930|gb|EFK28112.1| response regulator [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308047296|gb|ADN99839.1| response regulator [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE +S NG A K+ P +L++ DI+MPEMDGI
Sbjct: 2 KILVVDDDKEIAQLLEIYIKNEGYEPISAYNGREALTKLNTNPDIALMILDIMMPEMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D L ++ ++ ++KPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSQLPILVLSAKTGDMDKIQGLITGADDYVTKPFNPLEIMARVKSLLRR 118
>gi|148261169|ref|YP_001235296.1| two component transcriptional regulator [Acidiphilium cryptum JF-5]
gi|146402850|gb|ABQ31377.1| two component transcriptional regulator, winged helix family
[Acidiphilium cryptum JF-5]
Length = 262
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L + + V + + A + L++ D+++P GI+
Sbjct: 29 HILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESGID 88
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR + ++ +T ++KPF+ R+LV + +L
Sbjct: 89 FARWLRGE-SQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRR 144
>gi|117626141|ref|YP_859464.1| nitrogen regulation protein NR(I) [Escherichia coli APEC O1]
gi|162138321|ref|YP_543400.2| nitrogen regulation protein NR(I) [Escherichia coli UTI89]
gi|218560943|ref|YP_002393856.1| nitrogen regulation protein NR(I) [Escherichia coli S88]
gi|300985893|ref|ZP_07177629.1| nitrogen regulation protein NR [Escherichia coli MS 200-1]
gi|306813865|ref|ZP_07448041.1| nitrogen regulation protein NR(I) [Escherichia coli NC101]
gi|331665517|ref|ZP_08366415.1| nitrogen regulation protein NR(I) [Escherichia coli TA143]
gi|115515265|gb|ABJ03340.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli APEC O1]
gi|218367712|emb|CAR05501.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli S88]
gi|281180931|dbj|BAI57261.1| two-component regulator protein [Escherichia coli SE15]
gi|294494068|gb|ADE92824.1| nitrogen regulation protein NR(I) [Escherichia coli IHE3034]
gi|300306494|gb|EFJ61014.1| nitrogen regulation protein NR [Escherichia coli MS 200-1]
gi|305852863|gb|EFM53310.1| nitrogen regulation protein NR(I) [Escherichia coli NC101]
gi|315289573|gb|EFU48966.1| nitrogen regulation protein NR [Escherichia coli MS 110-3]
gi|323949362|gb|EGB45251.1| nitrogen regulation protein NR(I) [Escherichia coli H252]
gi|323954356|gb|EGB50141.1| nitrogen regulation protein NR(I) [Escherichia coli H263]
gi|323964215|gb|EGB59698.1| nitrogen regulation protein NR(I) [Escherichia coli M863]
gi|324012569|gb|EGB81788.1| nitrogen regulation protein NR [Escherichia coli MS 60-1]
gi|324111510|gb|EGC05491.1| nitrogen regulation protein NR(I) [Escherichia fergusonii B253]
gi|327250497|gb|EGE62205.1| nitrogen regulation protein NR [Escherichia coli STEC_7v]
gi|331057202|gb|EGI29192.1| nitrogen regulation protein NR(I) [Escherichia coli TA143]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|331655551|ref|ZP_08356543.1| nitrogen regulation protein NR(I) [Escherichia coli M718]
gi|331046652|gb|EGI18737.1| nitrogen regulation protein NR(I) [Escherichia coli M718]
Length = 472
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123
>gi|325970045|ref|YP_004246236.1| transcriptional regulator [Spirochaeta sp. Buddy]
gi|324025283|gb|ADY12042.1| two component transcriptional regulator, winged helix family
[Spirochaeta sp. Buddy]
Length = 232
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ D++ L L AGYE + G A +E +++ DI +P ++
Sbjct: 1 MKGKVLVVDDERDIQDVLAFVLEDAGYETRTTGRGDEALVLAQEWLPDIVILDIGLPGLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D+ V+ ++ + +SKPF+L++L+ V ++L
Sbjct: 61 GLEVCPRLVAM--DIPVIVLSSHDRDDQIVEGLEVGAEDYVSKPFNLKELLLRVEKILRR 118
>gi|320329810|gb|EFW85798.1| sensory box protein/response regulator [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 705
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|301167286|emb|CBW26868.1| two-component response regulator [Bacteriovorax marinus SJ]
Length = 238
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 49/106 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+L+ ED+ + L L Y V +NG A K RE L+L DI+MP +D
Sbjct: 1 MSKKVLIVEDEKHLAEGLKLNLTLQNYTVEHADNGILALQKWREWSPDLILLDIMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH 106
GI + + D + ++ ++ + + L+KPF
Sbjct: 61 GISVLEEIRKEDQKIPILILSAKDGTGDKVKALSKGVDDYLAKPFD 106
>gi|260591823|ref|ZP_05857281.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella veroralis F0319]
gi|260536107|gb|EEX18724.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella veroralis F0319]
Length = 876
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+R +L L + Y V ++G + VR ++L+DI+MP MDG+E
Sbjct: 635 ILIIDDNSDIRTYLRSVLSQK-YNVSEASDGKRGLELVRRTVPDIVLSDIMMPVMDGLEF 693
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + + +SKPF LR L++ + L+ +
Sbjct: 694 CEQLKTDKAISHIPVILLTARSMDEQRAEGYEHGADAYISKPFSLRLLLSRIENLIESR 752
>gi|253775496|ref|YP_003038327.1| nitrogen regulation protein NR(I) [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254163819|ref|YP_003046927.1| nitrogen regulation protein NR(I) [Escherichia coli B str. REL606]
gi|300931699|ref|ZP_07147006.1| nitrogen regulation protein NR [Escherichia coli MS 187-1]
gi|242379405|emb|CAQ34219.1| NtrC transcriptional dual regulator, subunit of NtrC-Phosphorylated
transcriptional dual regulator [Escherichia coli
BL21(DE3)]
gi|253326540|gb|ACT31142.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253975720|gb|ACT41391.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli B str. REL606]
gi|253979876|gb|ACT45546.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli BL21(DE3)]
gi|300460538|gb|EFK24031.1| nitrogen regulation protein NR [Escherichia coli MS 187-1]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|225018010|ref|ZP_03707202.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
DSM 5476]
gi|224949216|gb|EEG30425.1| hypothetical protein CLOSTMETH_01946 [Clostridium methylpentosum
DSM 5476]
Length = 251
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ EDD + +FL +L GY + + G ++L D+ +P++DG
Sbjct: 26 NPRILIIEDDTSILKFLSISLKTNGYRYDAASTGIEGLSLFLANNPDVILLDLGLPDIDG 85
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + + D+ ++ ++ ++ ++KPFH+ +L+ + L
Sbjct: 86 LTVLEQVRQ-SSDIPIIIVSARGQEREKVEALDLGADDYITKPFHIGELLARIRVALR 142
>gi|218886556|ref|YP_002435877.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218757510|gb|ACL08409.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 491
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+D +R L L G+EV+ +G + E L+ DI MP MD
Sbjct: 1 MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G+ + + PDL V+ I+G + ++ + KP L ++ R
Sbjct: 61 GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRALEY 120
Query: 118 --LTIKN 122
L +N
Sbjct: 121 GDLRREN 127
>gi|215489201|ref|YP_002331632.1| nitrogen regulation protein NR(I) [Escherichia coli O127:H6 str.
E2348/69]
gi|312969388|ref|ZP_07783590.1| nitrogen regulation protein NR [Escherichia coli 2362-75]
gi|215267273|emb|CAS11722.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli O127:H6 str. E2348/69]
gi|312285935|gb|EFR13853.1| nitrogen regulation protein NR [Escherichia coli 2362-75]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|191173897|ref|ZP_03035417.1| nitrogen regulation protein NR [Escherichia coli F11]
gi|331649713|ref|ZP_08350793.1| nitrogen regulation protein NR(I) [Escherichia coli M605]
gi|190905855|gb|EDV65474.1| nitrogen regulation protein NR [Escherichia coli F11]
gi|307628946|gb|ADN73250.1| nitrogen regulation protein NR(I) [Escherichia coli UM146]
gi|330908187|gb|EGH36706.1| nitrogen regulation protein NR(1) [Escherichia coli AA86]
gi|331041346|gb|EGI13496.1| nitrogen regulation protein NR(I) [Escherichia coli M605]
Length = 472
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123
>gi|190573243|ref|YP_001971088.1| putative two-component response regulator transcriptional regulator
[Stenotrophomonas maltophilia K279a]
gi|190011165|emb|CAQ44774.1| putative two-component response regulator transcriptional
regulatory protein [Stenotrophomonas maltophilia K279a]
Length = 246
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN IL+ +DD ++R+ L L + G V + G + + L++ D++MP
Sbjct: 1 MNHVPHILVVDDDSEIRQMLADYLQRNGLRVSQADGGRAMRALMDTHAVDLVVLDVMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + V+ +T ++KPF R+L+ +N +
Sbjct: 61 EDGLSLCRNLRAGKHRAVPVVLLTARDDETDRIIGLEMGADDYVTKPFSSRELLARINAV 120
Query: 118 LTI 120
+
Sbjct: 121 IRR 123
>gi|167574776|ref|ZP_02367650.1| response regulator receiver protein [Burkholderia oklahomensis
C6786]
Length = 345
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + FL L GY V+ +G A ++ ++L D +MP+MDG E
Sbjct: 35 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 94
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L V+F+T ++KP +L + +
Sbjct: 95 CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRR 152
>gi|161614708|ref|YP_001588673.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552644|ref|ZP_02346396.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168233471|ref|ZP_02658529.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237152|ref|ZP_02662210.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168467538|ref|ZP_02701375.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168821792|ref|ZP_02833792.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194469497|ref|ZP_03075481.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734514|ref|YP_002114094.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250090|ref|YP_002145965.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|200390714|ref|ZP_03217325.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|238911082|ref|ZP_04654919.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|161364072|gb|ABX67840.1| hypothetical protein SPAB_02459 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194455861|gb|EDX44700.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194710016|gb|ACF89237.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195630054|gb|EDX48706.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197213793|gb|ACH51190.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197289769|gb|EDY29130.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|199603159|gb|EDZ01705.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205322771|gb|EDZ10610.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205332481|gb|EDZ19245.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205341764|gb|EDZ28528.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|153814038|ref|ZP_01966706.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
gi|317502379|ref|ZP_07960544.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087969|ref|ZP_08336892.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848434|gb|EDK25352.1| hypothetical protein RUMTOR_00246 [Ruminococcus torques ATCC 27756]
gi|316896189|gb|EFV18295.1| DNA-binding response regulator DltR [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409280|gb|EGG88729.1| hypothetical protein HMPREF1025_00475 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 60/114 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L + Y V + +G SA D + + + ++ DI+MP++DG+
Sbjct: 2 RLLLAEDERALSKALTAILERNNYSVDAVYDGQSALDYLEADNYDGVVLDIMMPKVDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ R+ E + ++ +T + V + L+KPFH ++L+ + +
Sbjct: 62 VLRKVRERGNLIPILLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAI 115
>gi|237702900|ref|ZP_04533381.1| nitrogen regulation protein NR(I) [Escherichia sp. 3_2_53FAA]
gi|91074988|gb|ABE09869.1| nitrogen regulation protein NR(I) [Escherichia coli UTI89]
gi|226902837|gb|EEH89096.1| nitrogen regulation protein NR(I) [Escherichia sp. 3_2_53FAA]
Length = 489
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140
>gi|29349086|ref|NP_812589.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|253571250|ref|ZP_04848657.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|29340993|gb|AAO78783.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
gi|251839203|gb|EES67287.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1381
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ ++ + K L + Y V + NG + +E L+++D++MPEMDGIE
Sbjct: 1128 TILLVEDNGELLHLMTKLLSRE-YNVFTAQNGKEGIAVLEKEDVDLIVSDVMMPEMDGIE 1186
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T ++ +SKPF+L L + LL K
Sbjct: 1187 FCKYVKGHLEMSHIPMILLTAKNKEEDRAEAYEIGADAFISKPFNLTVLHARIRNLLKYK 1246
>gi|188491727|ref|ZP_02998997.1| nitrogen regulation protein NR(I) [Escherichia coli 53638]
gi|188486926|gb|EDU62029.1| nitrogen regulation protein NR(I) [Escherichia coli 53638]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|157163340|ref|YP_001460658.1| nitrogen regulation protein NR(I) [Escherichia coli HS]
gi|312971845|ref|ZP_07786019.1| nitrogen regulation protein NR [Escherichia coli 1827-70]
gi|157069020|gb|ABV08275.1| nitrogen regulation protein NR(I) [Escherichia coli HS]
gi|310334222|gb|EFQ00427.1| nitrogen regulation protein NR [Escherichia coli 1827-70]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|329923464|ref|ZP_08278946.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
HGF5]
gi|328941356|gb|EGG37650.1| putative transcriptional regulatory protein ResD [Paenibacillus sp.
HGF5]
Length = 231
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62
+L+ +DD ++ + L GY V+ ++G A + L++ D++MP+++GI
Sbjct: 4 VLIVDDDKEISGLISIYLENEGYRVIQAHDGEEALQAMTSNNGMIDLVILDVMMPKLNGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + ++ ++ + + KPF+ +L V LL
Sbjct: 64 DTCRRIRE-TSAIPILMLSAKSEDMDKILGLMTGADDYMIKPFNPLELTTRVKTLLRR 120
>gi|303257132|ref|ZP_07343146.1| DNA-binding response regulator VicR [Burkholderiales bacterium
1_1_47]
gi|302860623|gb|EFL83700.1| DNA-binding response regulator VicR [Burkholderiales bacterium
1_1_47]
Length = 235
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62
IL+ +D+ +RR L + L G++V + ++GA A + + E L+L D++MPE+DG+
Sbjct: 6 ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + D+ V+ ++ + + +SKPF++ +L+ + +L
Sbjct: 66 SMLKRLRK-SSDVPVIILSAKDERPMVIEGFREGADDFVSKPFYIEELMERIRAVLRR 122
>gi|260889876|ref|ZP_05901139.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
gi|260860482|gb|EEX74982.1| DNA-binding response regulator TrcR [Leptotrichia hofstadii F0254]
Length = 227
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ ++K L Y V SC NG A D + + +++DI++P +DG E
Sbjct: 2 RILVIEDEKNLNDIIVKKLVLEKYCVDSCLNGKDALDYIFSVEYDAIVSDIMLPGIDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E V+ +T + L KPF +L+ V LL
Sbjct: 62 ILRRIREKGIKTPVLLLTARDGIEDRVKGLDYGADDYLVKPFAFDELMARVRVLLRR 118
>gi|241895290|ref|ZP_04782586.1| response regulator [Weissella paramesenteroides ATCC 33313]
gi|241871596|gb|EER75347.1| response regulator [Weissella paramesenteroides ATCC 33313]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYE V ++G A K+R P L++ DI+MPEM G
Sbjct: 2 KILIVDDDHEIAELLEIYVKNEGYEPVIASDGKEALTKIRTNPDIGLIILDIMMPEMSGT 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + +P + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVLKEVRKDNP-VPILLLSAKSGAMDKIQGLITGADDYVTKPFNPLEVMARVRALLRR 118
>gi|239929290|ref|ZP_04686243.1| transcriptional regulatory protein [Streptomyces ghanaensis ATCC
14672]
Length = 221
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 61 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114
>gi|255692182|ref|ZP_05415857.1| putative response regulator receiver domain protein [Bacteroides
finegoldii DSM 17565]
gi|260622047|gb|EEX44918.1| putative response regulator receiver domain protein [Bacteroides
finegoldii DSM 17565]
Length = 1358
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE L+++DI+MP++DGI
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPDLIISDIMMPKVDGI 1164
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224
Query: 121 K 121
+
Sbjct: 1225 Q 1225
>gi|153806271|ref|ZP_01958939.1| hypothetical protein BACCAC_00527 [Bacteroides caccae ATCC 43185]
gi|149130948|gb|EDM22154.1| hypothetical protein BACCAC_00527 [Bacteroides caccae ATCC 43185]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + ++L K Y V + + SA K+ + + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLRELIQRSLEKERYVVEAAGDFNSALRKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ I+ ++ L KPFHL +L + ++
Sbjct: 62 LLERLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKSVIRR 118
>gi|149185885|ref|ZP_01864200.1| two-component response regulator [Erythrobacter sp. SD-21]
gi|148830446|gb|EDL48882.1| two-component response regulator [Erythrobacter sp. SD-21]
Length = 250
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L +DD ++ + AL G+ ++G +A + P L + DI MP+MDG+EL
Sbjct: 20 IALVDDDRNILTTVSIALQAEGFATRVYSDGEAALSALLGNPPDLAIFDIKMPKMDGMEL 79
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + P L V+F+T ++KPF LR L+ + +L +
Sbjct: 80 LRRLRDHSP-LPVIFLTSKDDEQDEEAGLQMGADDYIAKPFSLRLLLARIRAILRRSD 136
>gi|163847093|ref|YP_001635137.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
gi|163668382|gb|ABY34748.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl]
Length = 245
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+A+DD + R + AL YE NG A + E + L+ D++MP +DG
Sbjct: 18 KRRILVADDDPSIGRLIQTALPTQQYETTVVANGLEALEAFERETYDLIFLDVMMPFVDG 77
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ IT + ++KPF + + V V +L
Sbjct: 78 FDACERIRAK-SDVPIVIITAREGTDDIVQDFRRGADEYITKPFKVAEFVARVEAILRR 135
>gi|95928685|ref|ZP_01311432.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
gi|95135475|gb|EAT17127.1| two component transcriptional regulator, winged helix family
[Desulfuromonas acetoxidans DSM 684]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD+++ L L G +V +NG+ + E + L++ D+++P M+G
Sbjct: 2 EKILIIDDDNELCELLTDYLTTEGLQVSCVHNGSDGARQAVEH-YDLVILDVMLPGMNGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ R+ + ++ V+ +T L KPF+ R+LV + +
Sbjct: 61 DVLRQVRQ-SSEVPVVMLTARGEDIDRIVGLELGADDYLPKPFNPRELVARIRAI 114
>gi|317477946|ref|ZP_07937129.1| hsp90-like protein [Bacteroides sp. 4_1_36]
gi|316905860|gb|EFV27631.1| hsp90-like protein [Bacteroides sp. 4_1_36]
Length = 1357
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+D +R L YEV++ +GA VR E +++++D+VMP M G
Sbjct: 1093 DAKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1151
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ + V+ +T A+ N + ++KPF+ L++ N L+
Sbjct: 1152 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVN 1211
Query: 120 IK 121
+
Sbjct: 1212 SR 1213
>gi|283851785|ref|ZP_06369063.1| histidine kinase [Desulfovibrio sp. FW1012B]
gi|283572905|gb|EFC20887.1| histidine kinase [Desulfovibrio sp. FW1012B]
Length = 310
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 5/116 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ R FL + L G+ + +G A + +R E F ++L DI MP MDGIE
Sbjct: 189 KILLAEDNPINRLFLQELLRNEGHSITYAADGQEALEALRTEAFDIVLMDISMPRMDGIE 248
Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
RR E ++ + ++ +T A LSKP L +
Sbjct: 249 ATRRIRESVSGKINAKIPIVALTAHAFRVDAERFLKAGMDGYLSKPIDPAKLKEIL 304
>gi|260221054|emb|CBA29236.1| hypothetical protein Csp_A11130 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 1191
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED ++ + L + G+ V NG A D + + P+ L+L D++MP MDG+E
Sbjct: 937 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 996
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
R E + ++ +T A + ++KP +L ++
Sbjct: 997 TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 1048
Score = 97.1 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-------PFSLLLTDIVM 56
IL+ +D+ R + L G ++G +A D + ++ P L+L D M
Sbjct: 789 HILVVDDNLVNREVVCGMLHSFGARTSQADSGRAALDWLSQQTAANAQVPCDLVLLDGQM 848
Query: 57 PEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
PEMDG A L L ++ ++ S A LSKP +DL+ V
Sbjct: 849 PEMDGFSTAPLVRGLPNCSSLPMVLLSSAGMKGDGQRSRQVGIAGYLSKPIARQDLLQMV 908
Query: 115 NRLLTI 120
+ +L +
Sbjct: 909 SGVLQM 914
>gi|317048083|ref|YP_004115731.1| winged helix family two component transcriptional regulator
[Pantoea sp. At-9b]
gi|316949700|gb|ADU69175.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
Length = 246
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R + L K+GY NG + L++ DI+MP DG+
Sbjct: 6 HILVVDDDRDIRELITDYLMKSGYRATGAANGREMRAVLAANAVDLVVLDIMMPGDDGLT 65
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ +L ++ +T + + L KPF R+L+ + +L
Sbjct: 66 LCRQLRSDPQRNLPILMLTARSEDSDRILGLEMGADDYLIKPFVARELLARIKAILRR 123
>gi|253579017|ref|ZP_04856288.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251849960|gb|EES77919.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 234
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R ++ L Y+ ++ NG+SA + ++L D+ +P+M
Sbjct: 1 MNKTLILVVEDDRPIRNLIVTTLKTHDYKYLAAENGSSAILEASSHNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+G+E+ ++ ++ ++ I+ + ++ ++KPF + +L+ +
Sbjct: 61 EGVEVIKKIR-TWSNMPIIVISARSEDTDKIEALDAGADDYITKPFSVEELLARIR 115
>gi|218439786|ref|YP_002378115.1| response regulator receiver modulated GAF sensor protein
[Cyanothece sp. PCC 7424]
gi|218172514|gb|ACK71247.1| response regulator receiver modulated GAF sensor protein
[Cyanothece sp. PCC 7424]
Length = 308
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD R L A+ + GY+V++ +G ++ ++L D VMPEMDG
Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYQVITAKDGEECINEFNRCQPHMILLDAVMPEMDGFTC 74
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+R EL + ++ IT + ++KP H L V RLLT
Sbjct: 75 CQRLRELSEGSQIPILMITALDDQDSIDQAFTCGAVDYITKPIHWAVLAQRVKRLLT 131
>gi|170078959|ref|YP_001735597.1| two-component response regulator [Synechococcus sp. PCC 7002]
gi|169886628|gb|ACB00342.1| Two-component response regulator; GGDEF domain protein
[Synechococcus sp. PCC 7002]
Length = 602
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+D +R ++ L Y+V+ NG E L++ DI+MP MDG
Sbjct: 7 SPTILVIEDEDSIRELIVTLLIAEDYQVLEAENGQIGVGIAIENRPDLIICDIMMPGMDG 66
Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + DP+ + +F+T L+KPF +L++ + L
Sbjct: 67 YGVL-EILQADPETETIPFIFLTAKGTKENIRQGMNLGADDYLTKPFTTYELLDAIKTRL 125
Query: 119 T 119
Sbjct: 126 R 126
>gi|149184842|ref|ZP_01863160.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
gi|148832162|gb|EDL50595.1| phosphate regulon response regulator [Erythrobacter sp. SD-21]
Length = 239
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL EDD + L GY+V ++G A E+ L++ D ++ GIE
Sbjct: 15 KLLLVEDDPALAELLEYRFANEGYDVRVTSDGDEALLLAAEDVPDLVILDWMIEGTSGIE 74
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + ++ +T A L+KPF R+L+ V ++
Sbjct: 75 VCRRLRRDKATASVPIIMLTAREAEDDRIRGLETGADDYLTKPFSPRELLARVAAVMRR 133
>gi|91228465|ref|ZP_01262389.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
gi|269966827|ref|ZP_06180900.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
gi|91188000|gb|EAS74308.1| transcriptional regulator CpxR [Vibrio alginolyticus 12G01]
gi|269828494|gb|EEZ82755.1| Transcriptional regulatory protein CpxR [Vibrio alginolyticus 40B]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G++V N+G + + + L+L D++MP+++G+E
Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAI-NDKIDLILLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|54302690|ref|YP_132683.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
gi|46916114|emb|CAG22883.1| hypothetical protein PBPRB1011 [Photobacterium profundum SS9]
Length = 617
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED + L K G+ VV+ NNG A + + L+L D+ MPEM+G E
Sbjct: 490 TILLVEDSPSNQMIAKAILAKNGFNVVTANNGKEAVAALENTNYDLILMDLQMPEMNGFE 549
Query: 64 LARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L D+ ++ +T + + L+KP + ++ ++ L
Sbjct: 550 ACTCIRNLHNNKSDIPIIAMTANVSQQDQVQCFSVGMDDFLTKPINKIKMLEVLHHWLGR 609
Query: 121 KN 122
+
Sbjct: 610 SH 611
>gi|319899911|ref|YP_004159639.1| two component transcriptional regulator, winged helix family
[Bacteroides helcogenes P 36-108]
gi|319414942|gb|ADV42053.1| two component transcriptional regulator, winged helix family
[Bacteroides helcogenes P 36-108]
Length = 233
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|225028279|ref|ZP_03717471.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
gi|224954325|gb|EEG35534.1| hypothetical protein EUBHAL_02551 [Eubacterium hallii DSM 3353]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+ + K L GY V SC NG A + EE + +L D ++P DG E
Sbjct: 2 KILVVEDEPDLNHIIAKHLQAEGYIVDSCFNGNDAVYYITEESYDAILLDAMLPGKDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + VMF+T + KPF +++ + ++
Sbjct: 62 VLKEIRSQKIETPVMFLTARDQTEDIVTGLDFGADDYVVKPFSFEEVLARLRVIIKR 118
>gi|261407147|ref|YP_003243388.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261283610|gb|ACX65581.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED+ M + L + G++V++ G A R E L++ D ++PE
Sbjct: 1 MEPKLLIVEDEPGMLEEMQTYLQREGFKVLTACTGKEALMIARSERPDLVVLDWMLPEKS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
GI++ R + ++ +T + + L+KPF LR+L +
Sbjct: 61 GIDVCREIRQ-TSHCGIIMVTARSDESDKIVGLEIGADDYLTKPFSLRELAS 111
>gi|167567698|ref|ZP_02360614.1| response regulator receiver protein [Burkholderia oklahomensis
EO147]
Length = 347
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + FL L GY V+ +G A ++ ++L D +MP+MDG E
Sbjct: 37 ILIVDDTPENLAFLSDTLQAHGYAVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L V+F+T ++KP +L + +
Sbjct: 97 CLRIKQDERHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVRPEELCARIGAHVRR 154
>gi|189424026|ref|YP_001951203.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
gi|189420285|gb|ACD94683.1| multi-sensor hybrid histidine kinase [Geobacter lovleyi SZ]
Length = 1245
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+D ++ + L AG EV +NG +A + + F +L DI MP MDG E
Sbjct: 987 RVLLVEDNDMNQQVACELLTSAGIEVTVADNGHTAVELAAQHRFDTVLMDIQMPVMDGYE 1046
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+R DL ++ +T A +SKP + ++L + + R
Sbjct: 1047 ASRLIRADQACRDLPIIAMTAHAMPQDRQRCLESGMNDYVSKPINPQELYSTLERW 1102
Score = 55.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 5/116 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDG 61
K+L+ +D R G + + E+P+ LLL D + +DG
Sbjct: 838 KLLVLDDSARSRDIFEGLFYSLGCRAELAASAQEGLGCLERSEKPYDLLLLDDSLSGLDG 897
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+AR+ + P K++ ITG+ + L++P LR L + V
Sbjct: 898 FAVARQVRRMSPLHHQPKIIMITGYGDEEAHKQVVEEGLDGCLTRPVTLRSLFDAV 953
>gi|29829894|ref|NP_824528.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29607003|dbj|BAC71063.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|56418841|ref|YP_146159.1| lantibiotic biosynthesis response regulator [Geobacillus
kaustophilus HTA426]
gi|56378683|dbj|BAD74591.1| lantibiotic biosynthesis protein (response regulator) [Geobacillus
kaustophilus HTA426]
Length = 232
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD+D+ + + L Y+V + ++G A + + F L++ DI+M +DG
Sbjct: 3 NKKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI-NDDFDLIVLDIMMEGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL + D ++F++ + A ++KPF L++L ++ L +
Sbjct: 62 MELCTIIRDR-VDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRRE 120
>gi|83945804|ref|ZP_00958147.1| two-component system response regulator [Oceanicaulis alexandrii
HTCC2633]
gi|83850807|gb|EAP88669.1| two-component system response regulator [Oceanicaulis alexandrii
HTCC2633]
Length = 234
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD+++ + L GY V + +G++A + E P L + DI MP MDG+E
Sbjct: 3 TIALVDDDENILTSVSMFLENEGYNVRTFTDGSAALPHLTETPPDLAIFDIKMPRMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + +L V+F+T ++KPF + L + +L
Sbjct: 63 LLRRVRQ-SSNLPVIFLTSKDGEFDEALGLDLGADDYIAKPFSHQLLARRIKAVLRR 118
>gi|327481131|gb|AEA84441.1| DNA-binding response regulator [Pseudomonas stutzeri DSM 4166]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ +LL +DD ++ LI L + G+ +C++G SA + + + ++ D+++P+
Sbjct: 1 MSE-LLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ PDL V+ ++G L+KP R+L + +L
Sbjct: 60 GLELLKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRR 119
>gi|319790077|ref|YP_004151710.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thermovibrio ammonificans HB-1]
gi|317114579|gb|ADU97069.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Thermovibrio ammonificans HB-1]
Length = 452
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 4/115 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D+ +R L K L G+ V+ +NG A +RE+ + DI MP++DG+
Sbjct: 3 KILVADDEKSIRLVLKKYLTSKGHSVIEASNGEEALKAIREQKPDVAFIDIKMPKLDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L +R E + V+ +T + + + L+KPF ++ ++++L
Sbjct: 63 LLKRVKE----IPVVILTAYGTMEYTVKAMELGAVDYLTKPFSFEEIEEVLSKIL 113
>gi|305672956|ref|YP_003864627.1| two-component response regulator [Bacillus subtilis subsp.
spizizenii str. W23]
gi|305411199|gb|ADM36317.1| two-component response regulator (paired with YcbM) [Bacillus
subtilis subsp. spizizenii str. W23]
Length = 230
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+ILL EDD + + L K G+E+V +G +++ + L+L DI++P+++G+
Sbjct: 2 QRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ I+ ++KPF + +L V +
Sbjct: 62 DFLKIIREK-SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 118
>gi|284993166|ref|YP_003411721.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
gi|284066412|gb|ADB77350.1| histidine kinase [Geodermatophilus obscurus DSM 43160]
Length = 919
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ DMR +L + L + V + NG A D VR +++TD++MP +DG +L
Sbjct: 600 VLVVDDNADMRAYLTRLLSPV-WTVRTATNGQEALDAVRAARPHVVVTDVMMPGLDGFDL 658
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+ +T A + L+KPF +L+ + ++
Sbjct: 659 LRALRADPALRDVPVVMLTARAGQEAAVEGFDAGVDDYLAKPFESAELIGRLRAVVER 716
>gi|229194199|ref|ZP_04321055.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
gi|228589290|gb|EEK47253.1| hypothetical protein bcere0002_57910 [Bacillus cereus ATCC 10876]
Length = 229
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINNFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|255281413|ref|ZP_05345968.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
14469]
gi|255267901|gb|EET61106.1| DNA-binding response regulator YycF [Bryantella formatexigens DSM
14469]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMP 57
M + +IL+ ED++ + R + L GY+V NG A +E L+L DI+MP
Sbjct: 1 MKKNRILIVEDEEKLARTMGDFLKFQGYDVCCAANGREALATFYKERKTLDLILLDIMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ G E+ + + ++ V+ +T ++V ++KP+ L + + +
Sbjct: 61 DISGYEVLKEIRK-TSNIPVIMLTARSSVEDQMSGFEKGADDYITKPYTLELVRLHIEAV 119
Query: 118 LTI 120
L
Sbjct: 120 LKR 122
>gi|194435181|ref|ZP_03067412.1| nitrogen regulation protein NR [Shigella dysenteriae 1012]
gi|194416579|gb|EDX32717.1| nitrogen regulation protein NR [Shigella dysenteriae 1012]
Length = 489
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140
>gi|163734401|ref|ZP_02141841.1| probable two-component response regulator transcription regulator
protein [Roseobacter litoralis Och 149]
gi|161392409|gb|EDQ16738.1| probable two-component response regulator transcription regulator
protein [Roseobacter litoralis Och 149]
Length = 223
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL ED+ + F+ + L G+ V NG + + + ++L D+++P +
Sbjct: 1 MN--ILLIEDEARVADFVRRGLAAEGWSVDHAANGEDGLELAAQNNYDVVLLDLMLPGIQ 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R+ +M +T + L KPF +LV + L
Sbjct: 59 GQGVCRKLRARKSKTPIMMLTALDGSEEKVEGLKIGADDYLPKPFDFDELVARIEALHRR 118
>gi|110644208|ref|YP_671938.1| nitrogen regulation protein NR(I) [Escherichia coli 536]
gi|110345800|gb|ABG72037.1| nitrogen regulation protein NR(I) [Escherichia coli 536]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|187733434|ref|YP_001882566.1| nitrogen regulation protein NR(I) [Shigella boydii CDC 3083-94]
gi|187430426|gb|ACD09700.1| nitrogen regulation protein NR(I) [Shigella boydii CDC 3083-94]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|325981914|ref|YP_004294316.1| two component transcriptional regulator, winged helix family
[Nitrosomonas sp. AL212]
gi|325531433|gb|ADZ26154.1| two component transcriptional regulator, winged helix family
[Nitrosomonas sp. AL212]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ + + L AGY + +C++G E P + DI +P G+E
Sbjct: 2 RILVIEDEFKLQNQIRQQLETAGYMIDTCSDGDEGLFLASEYPLDAAIIDIGLPGKSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E L ++ +T ++ L+KPF + +L+ V LL
Sbjct: 62 IIKTLRERGNLLPILILTARSSWQDKVQGLEMGADDYLTKPFQMEELLARVKALLRR 118
>gi|162448983|ref|YP_001611350.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
ce 56']
gi|161159565|emb|CAN90870.1| two-component hybrid sensor and regulator [Sorangium cellulosum 'So
ce 56']
Length = 1307
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +ILLA+D+ DMR ++ + L A + V + ++GA+A D R P L++ D++MP +DG
Sbjct: 653 SARILLADDNADMRMYVRRIL-DARWTVEAVSDGAAALDVARRSPPDLVIADVMMPGLDG 711
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L R + V+ ++ A + A L KPF R+L+ V L
Sbjct: 712 FGLLRALRADPVTRCVPVIMLSARAGEESRVEGLAAGADDYLVKPFSARELIARVATHLQ 771
Query: 120 I 120
+
Sbjct: 772 L 772
Score = 108 bits (271), Expect = 3e-22, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL +D+ D L ++LG GY +G SA E + L DI +P MDG
Sbjct: 1185 RRILLVDDNLDAVELLAESLGAMGYTTRVAPDGPSALRIAEEFAPDVALLDIGLPVMDGY 1244
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
ELARR E ++++ ITG+ A S L KP + L + +
Sbjct: 1245 ELARRLREQPAGERVRLIAITGYGQEADFRRSEGAGFETHLVKPIQIERLTSLLEE 1300
>gi|121593474|ref|YP_985370.1| two component transcriptional regulator [Acidovorax sp. JS42]
gi|120605554|gb|ABM41294.1| two component transcriptional regulator, winged helix family
[Acidovorax sp. JS42]
Length = 242
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
+IL+ ED+ D+ L+ L AGY +G +A + +P L L D+++P +DG+
Sbjct: 6 RILVVEDEQDIADVLLDYLRHAGYAPEHAADGRTALQALTAPQPPDLTLLDVMLPGIDGL 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ R+A + ++ IT + KPF R++V V +L
Sbjct: 66 EVLRQARRHTDN-PIVVITARVEEVDRLIGLELGADDYICKPFSPREVVARVKAVL 120
>gi|293399972|ref|ZP_06644118.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291306372|gb|EFE47615.1| DNA-binding response regulator SrrA [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ +D+ +R + K GYE+ +G A +K R++ F L++ DI+MP +D
Sbjct: 1 MS-KLLVVDDEAQIRNIIRKYGEFEGYEIAEAVDGMDAIEKCRKDQFDLIIMDIMMPNLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ E V+ ++ + KPF ++L+ VN +L
Sbjct: 60 GFSAVKKIREEAS-TPVIMLSARGEEYDRIHGFETGIDDYVVKPFSPKELMMRVNAILKR 118
>gi|255011275|ref|ZP_05283401.1| two-component system, transcriptional regulatory protein
[Bacteroides fragilis 3_1_12]
gi|313149087|ref|ZP_07811280.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
gi|313137854|gb|EFR55214.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
Length = 233
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + + + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|118619706|ref|YP_908038.1| two component transcriptional regulator TrcR [Mycobacterium
ulcerans Agy99]
gi|118571816|gb|ABL06567.1| two component transcriptional regulator TrcR [Mycobacterium
ulcerans Agy99]
Length = 257
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G++V +NG A K + +L+ DI++P++DG++
Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWDVEIAHNGREAISKFDKISPDVLVLDIMLPDVDGLQ 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R + D +F+T +V ++KPF L +LV + LL +
Sbjct: 93 ILQRVRDSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRRSS 151
>gi|156740994|ref|YP_001431123.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156232322|gb|ABU57105.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 230
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD + L L + GY V++ +G + ++ R + +++ D+++P +D
Sbjct: 3 MS-TILLVEDDPILSETLRYNLEREGYSVINAVDGVAGLERARRDQPDMVILDVMLPRLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++KPF L +L+ V ++
Sbjct: 62 GFSVCRILRQE-SEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRR 120
>gi|30064843|ref|NP_839014.1| nitrogen regulation protein NR(I) [Shigella flexneri 2a str. 2457T]
gi|56480461|ref|NP_709666.2| nitrogen regulation protein NR(I) [Shigella flexneri 2a str. 301]
gi|110807448|ref|YP_690968.1| nitrogen regulation protein NR(I) [Shigella flexneri 5 str. 8401]
gi|30043103|gb|AAP18825.1| sensor glnL response regulator (nitrogen regulator I, NRI)
[Shigella flexneri 2a str. 2457T]
gi|56384012|gb|AAN45373.2| sensor glnL response regulator (nitrogen regulator I, NRI)
[Shigella flexneri 2a str. 301]
gi|110616996|gb|ABF05663.1| Nitrogen regulation protein NR(I) [Shigella flexneri 5 str. 8401]
gi|281603256|gb|ADA76240.1| Nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Shigella flexneri 2002017]
gi|313647093|gb|EFS11548.1| nitrogen regulation protein NR [Shigella flexneri 2a str. 2457T]
gi|332751493|gb|EGJ81894.1| nitrogen regulation protein NR [Shigella flexneri K-671]
gi|332753198|gb|EGJ83581.1| nitrogen regulation protein NR [Shigella flexneri 2747-71]
gi|332764608|gb|EGJ94840.1| nitrogen regulation protein NR [Shigella flexneri 2930-71]
gi|332997584|gb|EGK17199.1| nitrogen regulation protein NR [Shigella flexneri VA-6]
gi|332998501|gb|EGK18099.1| nitrogen regulation protein NR [Shigella flexneri K-272]
gi|332998554|gb|EGK18151.1| nitrogen regulation protein NR [Shigella flexneri K-218]
gi|333013928|gb|EGK33290.1| nitrogen regulation protein NR [Shigella flexneri K-304]
gi|333013996|gb|EGK33357.1| nitrogen regulation protein NR [Shigella flexneri K-227]
Length = 469
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|37521157|ref|NP_924534.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35212153|dbj|BAC89529.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 220
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD +R L L G+ V + N + + L++TDI+MP++D
Sbjct: 1 MAAHLLLVDDDPGIRLALQAYLEDEGFGVTTARNAIEGLELAEKHQPDLVITDIMMPQVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ V+F+T A + KP +LV V LL
Sbjct: 61 GYRFLQKLRALPRFRYTPVVFLTAKGQTADRIQGYRHGCDAYMPKPGDPEELVAIVRNLL 120
Query: 119 TI 120
Sbjct: 121 DR 122
>gi|318078413|ref|ZP_07985745.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 245
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA + LL+ D+++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAVAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R++ V+ LL
Sbjct: 79 EVCRRVQAHRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 135
>gi|317128046|ref|YP_004094328.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
gi|315472994|gb|ADU29597.1| two component transcriptional regulator, winged helix family
[Bacillus cellulosilyticus DSM 2522]
Length = 228
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+ ED++ +R + L K GY+V++ +G A ++ + ++ D+++P++ G E+ R
Sbjct: 9 VVEDNEMIRNLVEIYLRKEGYDVITAVDGEEAKEQFLQYSPCAVILDLMLPKLSGEEVCR 68
Query: 67 RAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T + + + KPF +L+ V +L
Sbjct: 69 WIRSQKRNEISIIMLTAKISAESKINGLRIGADDYVIKPFSPEELMARVEAVLRR 123
>gi|270294949|ref|ZP_06201150.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270274196|gb|EFA20057.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 1357
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+D +R L YEV++ +GA VR E +++++D+VMP M G
Sbjct: 1093 DAKILIVEDNDSIRDMLAGIFKPF-YEVLTAADGAEGLALVRSEMPNIVVSDVVMPNMSG 1151
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ + V+ +T A+ N + ++KPF+ L++ N L+
Sbjct: 1152 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVN 1211
Query: 120 IK 121
+
Sbjct: 1212 SR 1213
>gi|182420209|ref|ZP_02951439.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237665789|ref|ZP_04525777.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182375907|gb|EDT73498.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237658736|gb|EEP56288.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +DD ++R + L + +G A K+ E+ +SL++ DI+MP+ D
Sbjct: 1 MSENILIVDDDKEIRDLISLYLEADRFYTDKAADGVEALIKLEEKKYSLVILDIMMPKKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE + + V+F+T + + +SKPF +L+ V L
Sbjct: 61 GIETIIEIRKKYK-MPVIFLTAKSQEIDMINGLTLGADDYISKPFSSLELIARVKAQLRR 119
>gi|168069753|ref|XP_001786566.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162660993|gb|EDQ48622.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 717
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
+L+ +DD + L L GY +++ +NG A +K++ + L++ D +MP M G+
Sbjct: 401 TVLMVDDDPVNLQVLRNLLALEGYRLMTASNGQEALEKIQSGQSIDLVIADWMMPGMSGL 460
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R L ++ +T + + L KP +L V LL +
Sbjct: 461 DLCRSVRRQFSLSALPILLLTARSLPEDVRIGLSAGANDFLRKPVDAEELRARVRTLLEL 520
Query: 121 K 121
+
Sbjct: 521 R 521
>gi|152984853|ref|YP_001347435.1| putative two-component response regulator [Pseudomonas aeruginosa
PA7]
gi|150960011|gb|ABR82036.1| probable two-component response regulator [Pseudomonas aeruginosa
PA7]
Length = 272
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+ +I L AG +G + + R+ + ++L DI++P ++
Sbjct: 50 MHIHVLVVEDNFDLAGTIIDYLEAAGVVCDHARDGQAGLNLARDNRYDVILLDIMLPRIN 109
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E V+ +T + D L KPF L +L+ + L
Sbjct: 110 GRQVCRQLREAGLQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRR 169
Query: 121 KN 122
++
Sbjct: 170 RS 171
>gi|148263635|ref|YP_001230341.1| two component transcriptional regulator [Geobacter uraniireducens
Rf4]
gi|146397135|gb|ABQ25768.1| two component transcriptional regulator, winged helix family
[Geobacter uraniireducens Rf4]
Length = 225
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ + L K GY + +G S + R P L+L D+++P + G
Sbjct: 2 KTILVIEDERDLAELIAFNLEKEGYRPLIALDGVSGLEAARSNPPDLILLDLMLPGLMGT 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E + ++ +T + KPF R+L+ V +L
Sbjct: 62 EICKLLKKNEKTAAIPIIMLTAKGEEIDRVVGFEVGADDYMVKPFSTRELLLRVKAVLRR 121
>gi|302188629|ref|ZP_07265302.1| two component transcriptional regulator [Pseudomonas syringae pv.
syringae 642]
Length = 220
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + +AL + GY V +G+SA + E F L + D+ +P + G E
Sbjct: 2 RLLLIEDDVALGEGIQQALSREGYTVDWIKDGSSALHALLSESFDLAILDVGLPTLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L VM +T A L KPF + +L + LL
Sbjct: 62 VLRRLRHSGSTLPVMILTARDATEDRIIGLDIGADDYLVKPFDVSELKARLRALLRR 118
>gi|291548797|emb|CBL25059.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++D+R + K L K Y V +C +G A + + ++ DI++P DG E
Sbjct: 2 RLLIVEDENDLRNIVKKRLVKEHYSVDACGDGLEAMAYIDMTSYDGIILDIMLPGKDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + D V+ +T ++ L KPF +L+ + ++ K
Sbjct: 62 ILRELRQREDDTPVLLLTAKDSIEDRVRGLDLGADDYLIKPFAFEELLARIRVMMRRK 119
>gi|224371593|ref|YP_002605757.1| response regulator, CheY-like receiver domain protein
[Desulfobacterium autotrophicum HRM2]
gi|223694310|gb|ACN17593.1| response regulator, CheY-like receiver domain protein
[Desulfobacterium autotrophicum HRM2]
Length = 247
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + R + L GY+V S ++G + ++ F ++ D++MP+MDG E+
Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + D+ V+ +T L K F R+L+ + + T ++
Sbjct: 73 LKQLRKQ-SDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAV-TRRH 128
>gi|161486796|ref|NP_805595.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|161501946|ref|NP_455593.2| transcriptional regulator YedW [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|213021734|ref|ZP_03336181.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213162819|ref|ZP_03348529.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213428532|ref|ZP_03361282.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213610054|ref|ZP_03369880.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213857941|ref|ZP_03384912.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289811681|ref|ZP_06542310.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289824356|ref|ZP_06543949.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 226
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAY-QPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|161522839|ref|YP_001585768.1| two component transcriptional regulator [Burkholderia multivorans
ATCC 17616]
gi|189348324|ref|YP_001941520.1| two-component system aerobic respiration control protein
[Burkholderia multivorans ATCC 17616]
gi|160346392|gb|ABX19476.1| two component transcriptional regulator, winged helix family
[Burkholderia multivorans ATCC 17616]
gi|189338462|dbj|BAG47530.1| two-component system aerobic respiration control protein
[Burkholderia multivorans ATCC 17616]
Length = 253
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L L V G + L++ D+ MP DG++
Sbjct: 8 HVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGVQ 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR +L + ++G A + L+KPF R+L+ V LL
Sbjct: 68 IARELR-TRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRR 123
>gi|160879822|ref|YP_001558790.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428488|gb|ABX42051.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + RRF+ L + Y V + +NG A D + L++ DI+MP+MDG E
Sbjct: 3 HILVVDDDKNTRRFMKAVLEEEQYIVFTASNGVEALDILDTTHIDLVVLDIMMPKMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L ++ ++ A ++KP ++V + LL
Sbjct: 63 FTEILRSVQNELPILMVSAKQLPADRKKGFQVGIDDFMTKPVDAEEMVLRIKALLRR 119
>gi|86607343|ref|YP_476106.1| response regulator [Synechococcus sp. JA-3-3Ab]
gi|86555885|gb|ABD00843.1| response regulator [Synechococcus sp. JA-3-3Ab]
Length = 121
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ ED R + K L + G+EV++ +G A + V++ L++ DIVMP M+
Sbjct: 1 MS-RVLVVEDSQSQREMIGKLLQENGFEVMTVEDGVEAVEAVKQNKPDLIVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R L ++ + ++KPF ++LV + +LL
Sbjct: 60 GYEVCRLLKADPLTQKTPIVMCSSKGEEFDRYWGLRQGADAYIAKPFQPQELVGTIKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|51702437|gb|AAU08791.1| RisA [Bordetella ansorpii]
Length = 210
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 48/108 (44%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
+R L + L + G+ V + + E F LL+ D+++P DG+ + RR
Sbjct: 1 LRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHD 60
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T A LSKPF+ R+L+ +N +L +
Sbjct: 61 NTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRR 108
>gi|27378232|ref|NP_769761.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
gi|27351379|dbj|BAC48386.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 224
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L KAL AGY V +G + EP+ ++ DI +P+ DGI
Sbjct: 2 RLLVVEDDPDLNRQLTKALTDAGYVVDRAFDGEEGHYLGDNEPYDAVVLDIGLPKKDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|186683239|ref|YP_001866435.1| multi-component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186465691|gb|ACC81492.1| multi-component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 710
Score = 141 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ E+D D L +L + V + ++ SA + + L++ D+++P+ +GI
Sbjct: 2 KLLIVENDQDTAAALTTSLVAQQFTVDTASDSRSALELAEATEYDLIVLDVMLPDENGIR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + ++ +TG A ++KP+ L +L+ + LL
Sbjct: 62 LCRQLRTQNQQEPILLLTGKVDPADRIAGFEAGADDYITKPYELSELLARIRALLRR 118
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ +DD + L L G++V + + + + + LLL D+ MP G
Sbjct: 590 NARLLIVDDDPALLSMLEAQLQLWGFQVTTLADSSQFWQYLEATTPDLLLLDVAMPGFSG 649
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
IEL + L V+ ++ A + A + KP DL+ +
Sbjct: 650 IELCQVVKSDPRWSRLPVLLLSAHADADTLYRALAAGADDYILKPIVEADLIQRI 704
Score = 82.5 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 45/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE--MDGI 62
+LL +DD D+ + + + + A +++ ++ D++ P G+
Sbjct: 468 VLLIDDDTDLIERMQANASNWSIHLETVTDLTLARQRLQYLTPDAIILDLIFPNTTESGL 527
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + P + V+ +TG + + L KP ++ V++LL
Sbjct: 528 TLLAQLKHQFPTIPVLVLTGLGDLTKRVEVTRLGANAFLQKPATPTEVFQAVSQLLHR 585
>gi|325068515|ref|ZP_08127188.1| winged helix family two component transcriptional regulator
[Actinomyces oris K20]
Length = 219
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ + FL K L AG+ + G A +E F L++ D+ +P++D
Sbjct: 1 MS-RILIVEDEPRIVAFLTKGLKAAGFTTHTTAEGRQAVALAVQEDFDLIILDVGLPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ ++ V+ +T ++VA + KPF +L+ + L
Sbjct: 60 GFEVLQQLRGQGVGAPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118
>gi|312960750|ref|ZP_07775255.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas fluorescens WH6]
gi|311284408|gb|EFQ62984.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas fluorescens WH6]
Length = 229
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++IL+ EDD D L L + G+EV +G D + L+L D+++P +
Sbjct: 1 MSGKRILIVEDDADSANILEAYLRRDGFEVALAEDGQRGLDLHKSWRPDLILLDVMLPRL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ D V+ +T + + KP+ R++V V+ +L
Sbjct: 61 SGTEVLSAVR-RSSDTPVIMVTAMGDEPEKLGALRYGADDYVVKPYSPREVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|237724054|ref|ZP_04554535.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|265755338|ref|ZP_06090108.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|229437514|gb|EEO47591.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
gi|263234480|gb|EEZ20070.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 1351
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ + R FL + L K Y+V+ G E +L+++D++MP M+GIEL
Sbjct: 1102 ILLVEDNTEFRNFLKEELNKW-YQVIEAKEGLEGEKIAIERDPNLIISDVMMPIMNGIEL 1160
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + ++ +T + LSKPF+ L+ + +L+ +
Sbjct: 1161 CKRLKNNIQTSHIPIILLTARISDEDKMTGYEAGADSYLSKPFNFDILLTRIRKLIEQQ 1219
>gi|227891876|ref|ZP_04009681.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|301299823|ref|ZP_07206059.1| response regulator receiver domain protein [Lactobacillus
salivarius ACS-116-V-Col5a]
gi|227866339|gb|EEJ73760.1| response regulator [Lactobacillus salivarius ATCC 11741]
gi|300852576|gb|EFK80224.1| response regulator receiver domain protein [Lactobacillus
salivarius ACS-116-V-Col5a]
Length = 229
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD D+ L + GYEV NG A K+ P +L++ D++MP+MDG+
Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + V+ ++ ++KPF+ +++ V LL
Sbjct: 62 EVIREVRKE-SQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|298491730|ref|YP_003721907.1| LuxR family two component transcriptional regulator ['Nostoc
azollae' 0708]
gi|298233648|gb|ADI64784.1| two component transcriptional regulator, LuxR family ['Nostoc
azollae' 0708]
Length = 231
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ +R + + L ++G++V + +N +D ++ L+++DI+MP++D
Sbjct: 1 MSAQLLLVDDEPGLREAVKEYLQESGFKVQTASNAREGWDMMQHSIPDLVISDIMMPQVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ L V+F+T L+KPF +LV V LL
Sbjct: 61 GYHFLKQMRDDARFQALPVVFLTAKGMTGDRIQGYQAGVDAYLAKPFDPDELVAIVENLL 120
>gi|297202432|ref|ZP_06919829.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197710046|gb|EDY54080.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 219
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 48/116 (41%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ ED+ + L K L GY V ++G + E + L++ DI++P ++G +
Sbjct: 1 MIVEDERRLALSLAKGLTAEGYAVDVVHDGREGLHRATEGSYDLVILDIMLPGLNGYRVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ +T + L+KPF LV + LL +
Sbjct: 61 AALRAAGHEVPILMLTAKDGEYDEAEGLDTGADDYLTKPFSYVVLVARIKALLRRR 116
>gi|154492207|ref|ZP_02031833.1| hypothetical protein PARMER_01841 [Parabacteroides merdae ATCC
43184]
gi|154087432|gb|EDN86477.1| hypothetical protein PARMER_01841 [Parabacteroides merdae ATCC
43184]
Length = 227
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++LL ED+ + + L +EV+ NG + RE +++TDI+MP++
Sbjct: 1 MDKIRVLLVEDEPTLAMIIKDTLDGEEFEVILAANGEEGLSRYREAKPDIIVTDIMMPKI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + R + D + V+F++ +A + L KPF + +L+ + LL
Sbjct: 61 DGFTMVRHIRKTDRQIPVLFLSARSAANDVVEGFELGGNDYLKKPFGMAELIIRIKALLN 120
>gi|119489827|ref|ZP_01622582.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with Response Regulator Receiver modulation
[Lyngbya sp. PCC 8106]
gi|119454255|gb|EAW35406.1| Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL
domains) with Response Regulator Receiver modulation
[Lyngbya sp. PCC 8106]
Length = 641
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KI++ +D+ L L GY+V +G SA K++ +P L+L D++MP ++
Sbjct: 7 MKSKIIIVDDNSQNLGVLFNILDGLGYDVRVAQDGESALVKIKRDPADLILLDVMMPGIN 66
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E R + ++F+T + ++KPF +++ + L
Sbjct: 67 GFETCSRLKSDPSLAKIPIIFMTALSETIDRLKGLQLGAVDYITKPFSHDEVIARIQLHL 126
Query: 119 TI 120
+
Sbjct: 127 QL 128
>gi|331000912|ref|ZP_08324549.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Parasutterella excrementihominis YIT
11859]
gi|329569871|gb|EGG51628.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Parasutterella excrementihominis YIT
11859]
Length = 235
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDGI 62
IL+ +D+ +RR L + L G++V + ++GA A + + E L+L D++MPE+DG+
Sbjct: 6 ILIVDDESKIRRLLAQNLELEGFDVQTASDGAQALEVYNKSVEKPDLILLDLMMPEIDGM 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + D+ V+ ++ + +SKPF++ +L+ + +L
Sbjct: 66 SMLKRLRK-SSDVPVIILSAKDERPTVIEGFREGADDFVSKPFYIEELMERIRAVLRR 122
>gi|227536955|ref|ZP_03967004.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
gi|227243151|gb|EEI93166.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
Length = 230
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLAED+ M + + +AL G+ V +G A+ R + + + D++MP DG
Sbjct: 5 HILLAEDEVLMGKIIKEALESRGFTVTWVTDGLKAFSSFRAQRPDICIFDVMMPVQDGFT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ ++D D+ ++F+T ++ A + L KPF + +L+ + +
Sbjct: 65 LAKEIRKIDNDIPILFLTAKSSTADIVEGFELGANDYLKKPFSMEELIVRIKSQVKR 121
>gi|209523452|ref|ZP_03272007.1| multi-component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209496194|gb|EDZ96494.1| multi-component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 628
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L+ L Y+V N+G ++ ++ + L+L DI +P +DGI
Sbjct: 2 RILLVEDDLHLADALVAMLTSQKYQVDLVNDGQQGWEYIQSSSYDLVLLDIELPLLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + KP + +L + LL +
Sbjct: 62 LCHQLRSHNFQVPILLLTARNNQQDKVKGLDAGADDYMVKPLDIAELSARIRALLRRSS 120
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++++ +DD M + L G + ++ ++ + + LL+ DI MP ++G
Sbjct: 495 NTRVMIVDDDPQMLAAIQGLLQPWGIQTITLDDPRQFWKTLESSHPDLLVLDIEMPHLNG 554
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL + L V+F+T + L+KPF +L + L
Sbjct: 555 IELCQIVRNDPRWRGLPVLFVTAQTDRQIREQVFQAGADDYLTKPFTGSELATRIVNRLK 614
Query: 120 I 120
Sbjct: 615 R 615
Score = 40.1 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 8/57 (14%), Positives = 19/57 (33%)
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L T+ P + + T ++ + + L KP + + V +
Sbjct: 433 QLLVDLTQQKPPIPTVVFTTQGDISKRVEVVRLGGSAFLEKPVTIERAIAVVRDVFR 489
>gi|154505123|ref|ZP_02041861.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
gi|153794602|gb|EDN77022.1| hypothetical protein RUMGNA_02636 [Ruminococcus gnavus ATCC 29149]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ EDD D+ L+K + AGY+V +G A + E +L D+++P M G
Sbjct: 8 QKILIVEDDADISGLLVKIMEGAGYQVRQVFSGTEALFCMERELPDCVLLDLMLPGMTGE 67
Query: 63 ELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+ ++ +V ++KPF +++ V +
Sbjct: 68 AVLDQIRQKQKKEMPVLILSAKVSVQDKVKLLRLGADDYITKPFDPEEVIARVEAAMRR 126
>gi|150389766|ref|YP_001319815.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949628|gb|ABR48156.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 225
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + L K Y V ++G S D + + L+L DI++P+MDG+
Sbjct: 2 RILIIEDEIPLAEALSQMLKKNNYTVDLLHDGESGLDYALSDIYDLILLDIMLPKMDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + L+KPF +L+ + + K
Sbjct: 62 ILKEIRQEGIATPVILLTAKGEITDKVMGLDSGADDYLAKPFATEELLARIRAISRRK 119
>gi|291540164|emb|CBL13275.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 174
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +D+ ++ + L Y V A D + + F L + D+++P +D
Sbjct: 1 MNYKILVVDDESEIADLIEMYLQNENYTVYKSYTAQGALDYIADIEFDLAILDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E V+ +T ++KPF L+ V L
Sbjct: 61 GFQICRKIREKY-TYPVIMLTAKDGELDTITGLTMGADDYVTKPFKPLALMARVKAQLRR 119
>gi|258592344|emb|CBE68653.1| Response regulator receiver modulated metal dependent
phosphohydrolase (fragment) [NC10 bacterium 'Dutch
sediment']
Length = 336
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + L GYE++S +G A + V P L+L D++MP M G E
Sbjct: 11 TILVVDDQQVNCTLVETILAPQGYEIISALDGERALELVAARPPDLILLDVIMPGMSGFE 70
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E + + ++ +T + + LSKPFH +L LL +K
Sbjct: 71 VCTRLKENERTRLIPIVMVTSLSDLQDRIRGIEVGADDFLSKPFHPAELSARARSLLKLK 130
>gi|293394379|ref|ZP_06638679.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
gi|291423357|gb|EFE96586.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
Length = 237
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD ++ L L G+++ +G + + + L+ D+++P +DG+
Sbjct: 5 KRILIVEDDGNIAELLQLHLRDEGFDISHAGDGNLGMAMLEQGGWDALILDLMLPGIDGL 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RRA + ++ + ++ L+KPF + +LV V L +
Sbjct: 65 EICRRARNMTRYTPIIITSARSSEVHRVLGLELGADDYLAKPFSMLELVARVKALFRRQ 123
>gi|291612802|ref|YP_003522959.1| PhoB family transcriptional regulator [Sideroxydans lithotrophicus
ES-1]
gi|291582914|gb|ADE10572.1| two component transcriptional regulator PhoB, winged helix family
[Sideroxydans lithotrophicus ES-1]
Length = 230
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ ++ L + + G+ + + SA ++ L+L D ++P G+EL
Sbjct: 6 ILLVEDEPAIQELLAFNVAQCGFRAIQAYDVPSALVEINRALPDLILLDWMLPGTSGVEL 65
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
ARR D+ ++ +T ++KPF R+L+ + +L +
Sbjct: 66 ARRLRADARTRDIPIIMLTARIDERDKILGLESGADDYITKPFSPRELMARIRAVLRRR 124
>gi|148239785|ref|YP_001225172.1| two-component system response regulator [Synechococcus sp. WH 7803]
gi|147848324|emb|CAK23875.1| Two-component system response regulator [Synechococcus sp. WH 7803]
Length = 241
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD ++R+ + L GY+V S ++ ++ + L++ D++MP DG+
Sbjct: 7 IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQLEARLEFQRPDLIVLDLMMPGDDGLTA 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + DL V+ +T L+KPF R+L + +L ++
Sbjct: 67 LRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRS 124
>gi|160880001|ref|YP_001558969.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428667|gb|ABX42230.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 225
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + R + L AGYEV +NG SA + + ++ L++ D++MPEMDG E
Sbjct: 4 ILVVEDDKNTARLMKAVLMHAGYEVFCADNGVSALELMDKQHIDLIVLDVMMPEMDGYEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ +T + KP + +++ + LL
Sbjct: 64 TKQLRGSNDNTPILMVTAKQLPEDKCKGFLAGTDDYMVKPVNEDEMLLRIKALLRR 119
>gi|16118480|gb|AAL14442.1|AF370885_4 AdeR response regulator [Acinetobacter baumannii]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|332084074|gb|EGI89279.1| nitrogen regulation protein NR [Shigella boydii 5216-82]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|312868775|ref|ZP_07728967.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
gi|311095761|gb|EFQ54013.1| response regulator ArlR [Lactobacillus oris PB013-T2-3]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ F+ L GYE +G + D + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLDAALSQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR EL D ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREL-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|310658660|ref|YP_003936381.1| two-component response regulator yycf [Clostridium sticklandii DSM
519]
gi|308825438|emb|CBH21476.1| Two-component response regulator yycF [Clostridium sticklandii]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + + L +L + G+ + + +G A + ++ + + ++L D+++P +DG E+
Sbjct: 4 ILVVDDEPLIVKGLKFSLEQGGHIIDTSFDGNDALENIKSKDYDIILLDLMLPIIDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E D+ ++ ++ ++KPF++ +L VN +L
Sbjct: 64 CKKVRE-TSDVPIIILSAKGEDISKIKGLEIGADDYITKPFNIMELKARVNAILRR 118
>gi|303257821|ref|ZP_07343831.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
gi|330998757|ref|ZP_08322485.1| response regulator receiver domain protein [Parasutterella
excrementihominis YIT 11859]
gi|302859424|gb|EFL82505.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
gi|329576254|gb|EGG57770.1| response regulator receiver domain protein [Parasutterella
excrementihominis YIT 11859]
Length = 237
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++ IL+ +D+ +RR L ++L G++V ++ SA + ++ L++ D +MPE
Sbjct: 1 MTERTTILIVDDESKIRRLLSRSLEAEGFDVAVADSAMSASEYLKNGHCDLIILDYMMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+ + + V+ ++ +A + + KPF + ++ + +L
Sbjct: 61 IDGMAFLAELRKK-SSIPVIMLSAREEIAKKTQALELGADDYVVKPFSIEEMTARIRAIL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|296284429|ref|ZP_06862427.1| two-component response regulator [Citromicrobium bathyomarinum
JL354]
Length = 264
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
L +DD ++ + AL G+E ++G +A + + P L + DI MP MDG+EL
Sbjct: 32 LVDDDRNILTTVSIALQAEGFETRVYSDGETALRALTDNPPDLAVFDIKMPRMDGMELLA 91
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E L V+F+T +SKPF LR LV + +L
Sbjct: 92 KLRER-SALPVIFLTSKDDERDEEAGFQMGADDYISKPFSLRLLVARIRAILRR 144
>gi|291537171|emb|CBL10283.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
Length = 271
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ + L + GY ++ +G A + ++E LL+ D++MP +DGI
Sbjct: 43 QTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGI 102
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ A + KPF+ +LV V L
Sbjct: 103 RATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 159
>gi|218556427|ref|YP_002389341.1| nitrogen regulation protein NR(I) [Escherichia coli IAI1]
gi|218363196|emb|CAR00838.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli IAI1]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|218551144|ref|YP_002384935.1| nitrogen regulation protein NR(I) [Escherichia fergusonii ATCC
35469]
gi|218358685|emb|CAQ91339.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia fergusonii ATCC 35469]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|206579850|ref|YP_002238495.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
gi|206568908|gb|ACI10684.1| DNA-binding response regulator [Klebsiella pneumoniae 342]
Length = 231
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD D L L + Y+VV +G S D L+L D+++P ++G
Sbjct: 3 SRRVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + D+ V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLAGLRRKN-DVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|194444465|ref|YP_002040351.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194403128|gb|ACF63350.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 226
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|166033276|ref|ZP_02236105.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
27755]
gi|226324215|ref|ZP_03799733.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
gi|238925827|ref|YP_002939345.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
gi|257414028|ref|ZP_04745025.2| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
gi|323341562|ref|ZP_08081799.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
gi|166027633|gb|EDR46390.1| hypothetical protein DORFOR_03002 [Dorea formicigenerans ATCC
27755]
gi|225207764|gb|EEG90118.1| hypothetical protein COPCOM_01994 [Coprococcus comes ATCC 27758]
gi|238877504|gb|ACR77211.1| hypothetical protein EUBREC_3485 [Eubacterium rectale ATCC 33656]
gi|257201430|gb|EEU99714.1| DNA-binding response regulator VicR [Roseburia intestinalis L1-82]
gi|291540566|emb|CBL13677.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
gi|323091013|gb|EFZ33648.1| DNA-binding response regulator [Lactobacillus ruminis ATCC 25644]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|188583239|ref|YP_001926684.1| transcriptional regulator [Methylobacterium populi BJ001]
gi|179346737|gb|ACB82149.1| two component transcriptional regulator, winged helix family
[Methylobacterium populi BJ001]
Length = 240
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ + + L V +G + + L++ D+++P DG+
Sbjct: 9 HILVVEDDREISALVARYLRANECRVSLAGDGREMDRVLADARVDLIVLDLMLPGEDGLS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + L KPF+ R+L+ + +L K
Sbjct: 69 LCRRLRA-SSQVPILMLTAKSEEIDRIVGLEIGADDYLGKPFNPRELLARIRAILRRK 125
>gi|115525988|ref|YP_782899.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115519935|gb|ABJ07919.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 238
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 54/116 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R+ L + + + G+ V + A +++ L++ D+++P+ G++L
Sbjct: 6 ILIVDDDLEIRKLLARYIKEQGFRVQLASRCADVRERIATSQIDLIVLDVMLPDGSGLDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ V+ +T L KPF+ R+LV + +L
Sbjct: 66 CRDLRSERSNIPVILLTALKEEIDRIIGLEIGADDYLGKPFNPRELVARIRAVLRR 121
>gi|117924789|ref|YP_865406.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
gi|117608545|gb|ABK44000.1| two component transcriptional regulator, winged helix family
[Magnetococcus sp. MC-1]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEM 59
M+ IL+ ED+ D+ L +L + G+ G E L+L D+++P +
Sbjct: 1 MSVNILIVEDERDLANTLEYSLKQEGFNARVALTGEEGMRIATVERWPDLVLLDLMLPGV 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR E D + V+ +T + KPF +R+LV + +
Sbjct: 61 SGIEVCRRMREEDGTRTMPVIMLTARGEEIDKVMGFEAGADDYVVKPFKVRELVLRIRAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|329960222|ref|ZP_08298664.1| transcriptional regulatory protein RprY [Bacteroides fluxus YIT
12057]
gi|328532895|gb|EGF59672.1| transcriptional regulatory protein RprY [Bacteroides fluxus YIT
12057]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|257487365|ref|ZP_05641406.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331009036|gb|EGH89092.1| sensory box protein/response regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 705
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|218707493|ref|YP_002415012.1| nitrogen regulation protein NR(I) [Escherichia coli UMN026]
gi|293407487|ref|ZP_06651406.1| glnG [Escherichia coli FVEC1412]
gi|298383230|ref|ZP_06992823.1| glnG [Escherichia coli FVEC1302]
gi|300896910|ref|ZP_07115396.1| nitrogen regulation protein NR [Escherichia coli MS 198-1]
gi|218434590|emb|CAR15519.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli UMN026]
gi|284923969|emb|CBG37068.1| nitrogen regulation protein NR(I) (two-component system response
regulator) [Escherichia coli 042]
gi|291425404|gb|EFE98443.1| glnG [Escherichia coli FVEC1412]
gi|298276264|gb|EFI17784.1| glnG [Escherichia coli FVEC1302]
gi|300359263|gb|EFJ75133.1| nitrogen regulation protein NR [Escherichia coli MS 198-1]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|169630420|ref|YP_001704069.1| putative sensory transduction protein [Mycobacterium abscessus ATCC
19977]
gi|169242387|emb|CAM63415.1| Putative sensory transduction protein [Mycobacterium abscessus]
Length = 249
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + +EV ++G A D RE +++ DI +P +DGIE+
Sbjct: 19 LVVDDEVPLAEVVASYLKRESFEVHLAHDGRRALDLAREVDPDVVILDIGLPGVDGIEVC 78
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + D V+ +T + ++KPF R++V V +L
Sbjct: 79 RQLR-VFSDAYVVMLTARDTEVDTIVGLSVGADDYVTKPFSPREVVARVRAMLRR 132
>gi|154687436|ref|YP_001422597.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
gi|154353287|gb|ABS75366.1| YvrH1 [Bacillus amyloliquefaciens FZB42]
Length = 239
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY + + + A + V+ E LL+ D++M M
Sbjct: 3 NASILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 63 GFEACTEIRN-YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKR 121
>gi|22299989|ref|NP_683236.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22296174|dbj|BAC09998.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 214
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+A+DD +R + + L GY + +GA A + + LL+TDI MP M+
Sbjct: 1 MSLTVLIADDDPGIRLSVSRFLESEGYCCLMAGDGAQALEMIHHYQPHLLITDIAMPNMN 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL R+ + L V+++T + + L+KPF L +L V LL
Sbjct: 61 GYELVRQIRQHPSLRLLPVIYLTARTELEERIRAYRTGGDVYLAKPFDLNELAAVVRNLL 120
Query: 119 TI 120
Sbjct: 121 DR 122
>gi|119385327|ref|YP_916383.1| two component transcriptional regulator [Paracoccus denitrificans
PD1222]
gi|119375094|gb|ABL70687.1| two component transcriptional regulator, winged helix family
[Paracoccus denitrificans PD1222]
Length = 239
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD+ +R L + L + + V + + A A + F L++ D++MP DG
Sbjct: 11 HILVVDDDERIRSLLRRFLMRNDFLVTTARDAAHARRLLDGLDFDLIVLDVMMPGEDGFT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T + L KPF R+L+ + +L
Sbjct: 71 LTRDLRKRM-TTPILLLTAKGETGDRIEGFESGADDYLPKPFEPRELLLRIAAILRR 126
>gi|15834044|ref|NP_312817.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
Sakai]
gi|16131708|ref|NP_418304.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli str. K-12 substr. MG1655]
gi|82778958|ref|YP_405307.1| nitrogen regulation protein NR(I) [Shigella dysenteriae Sd197]
gi|89110160|ref|AP_003940.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL, nitrogen regulator I (NRI)
[Escherichia coli str. K-12 substr. W3110]
gi|170083340|ref|YP_001732660.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator; sigma54
interaction protein [Escherichia coli str. K-12 substr.
DH10B]
gi|195937506|ref|ZP_03082888.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC4024]
gi|238902935|ref|YP_002928731.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli BW2952]
gi|254795861|ref|YP_003080698.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
TW14359]
gi|256021506|ref|ZP_05435371.1| nitrogen regulation protein NR(I) [Shigella sp. D9]
gi|256026098|ref|ZP_05439963.1| nitrogen regulation protein NR(I) [Escherichia sp. 4_1_40B]
gi|260857734|ref|YP_003231625.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O26:H11 str.
11368]
gi|261223495|ref|ZP_05937776.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
FRIK2000]
gi|261257258|ref|ZP_05949791.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
FRIK966]
gi|293413302|ref|ZP_06655963.1| nitrogen regulation protein NR(I) [Escherichia coli B354]
gi|293417328|ref|ZP_06659952.1| nitrogen regulation protein NR(I) [Escherichia coli B185]
gi|293470180|ref|ZP_06664591.1| nitrogen regulation protein NR(I) [Escherichia coli B088]
gi|300819247|ref|ZP_07099447.1| nitrogen regulation protein NR [Escherichia coli MS 107-1]
gi|300823689|ref|ZP_07103815.1| nitrogen regulation protein NR [Escherichia coli MS 119-7]
gi|300937093|ref|ZP_07151955.1| nitrogen regulation protein NR [Escherichia coli MS 21-1]
gi|300948167|ref|ZP_07162297.1| nitrogen regulation protein NR [Escherichia coli MS 116-1]
gi|300957295|ref|ZP_07169522.1| nitrogen regulation protein NR [Escherichia coli MS 175-1]
gi|301023831|ref|ZP_07187565.1| nitrogen regulation protein NR [Escherichia coli MS 69-1]
gi|301648444|ref|ZP_07248175.1| nitrogen regulation protein NR [Escherichia coli MS 146-1]
gi|307140563|ref|ZP_07499919.1| nitrogen regulation protein NR(I) [Escherichia coli H736]
gi|307314011|ref|ZP_07593625.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Escherichia coli W]
gi|309783776|ref|ZP_07678422.1| nitrogen regulation protein NR [Shigella dysenteriae 1617]
gi|331670711|ref|ZP_08371547.1| nitrogen regulation protein NR(I) [Escherichia coli TA271]
gi|331685605|ref|ZP_08386188.1| nitrogen regulation protein NR(I) [Escherichia coli H299]
gi|84028723|sp|P0AFB9|NTRC_ECO57 RecName: Full=Nitrogen regulation protein NR(I)
gi|84028724|sp|P0AFB8|NTRC_ECOLI RecName: Full=Nitrogen regulation protein NR(I)
gi|304973|gb|AAB03002.1| CG Site No. 702 [Escherichia coli str. K-12 substr. MG1655]
gi|1790299|gb|AAC76865.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli str. K-12 substr. MG1655]
gi|13364266|dbj|BAB38213.1| response regulator for gln GlnG [Escherichia coli O157:H7 str.
Sakai]
gi|81243106|gb|ABB63816.1| response regulator for gln [Shigella dysenteriae Sd197]
gi|85676191|dbj|BAE77441.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL, nitrogen regulator I (NRI)
[Escherichia coli str. K12 substr. W3110]
gi|169891175|gb|ACB04882.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator; sigma54
interaction protein [Escherichia coli str. K-12 substr.
DH10B]
gi|209752798|gb|ACI74706.1| histidine protein kinase sensor GlnL [Escherichia coli]
gi|209752800|gb|ACI74707.1| histidine protein kinase sensor GlnL [Escherichia coli]
gi|209752802|gb|ACI74708.1| histidine protein kinase sensor GlnL [Escherichia coli]
gi|209752804|gb|ACI74709.1| histidine protein kinase sensor GlnL [Escherichia coli]
gi|209752806|gb|ACI74710.1| histidine protein kinase sensor GlnL [Escherichia coli]
gi|238861184|gb|ACR63182.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli BW2952]
gi|254595261|gb|ACT74622.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator, sigma54
interaction protein [Escherichia coli O157:H7 str.
TW14359]
gi|257756383|dbj|BAI27885.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O26:H11 str.
11368]
gi|260451296|gb|ACX41718.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Escherichia coli DH1]
gi|291321390|gb|EFE60829.1| nitrogen regulation protein NR(I) [Escherichia coli B088]
gi|291430848|gb|EFF03844.1| nitrogen regulation protein NR(I) [Escherichia coli B185]
gi|291468050|gb|EFF10548.1| nitrogen regulation protein NR(I) [Escherichia coli B354]
gi|300315952|gb|EFJ65736.1| nitrogen regulation protein NR [Escherichia coli MS 175-1]
gi|300396879|gb|EFJ80417.1| nitrogen regulation protein NR [Escherichia coli MS 69-1]
gi|300452294|gb|EFK15914.1| nitrogen regulation protein NR [Escherichia coli MS 116-1]
gi|300457825|gb|EFK21318.1| nitrogen regulation protein NR [Escherichia coli MS 21-1]
gi|300523751|gb|EFK44820.1| nitrogen regulation protein NR [Escherichia coli MS 119-7]
gi|300528133|gb|EFK49195.1| nitrogen regulation protein NR [Escherichia coli MS 107-1]
gi|301073487|gb|EFK88293.1| nitrogen regulation protein NR [Escherichia coli MS 146-1]
gi|306906328|gb|EFN36844.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Escherichia coli W]
gi|308928359|gb|EFP73820.1| nitrogen regulation protein NR [Shigella dysenteriae 1617]
gi|309704293|emb|CBJ03642.1| nitrogen regulation protein NR(I) (two-component system response
regulator) [Escherichia coli ETEC H10407]
gi|315063154|gb|ADT77481.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Escherichia coli W]
gi|315138436|dbj|BAJ45595.1| nitrogen regulation protein NR [Escherichia coli DH1]
gi|320182140|gb|EFW57043.1| Nitrogen regulation protein NR(I) [Shigella boydii ATCC 9905]
gi|320644594|gb|EFX13648.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H- str.
493-89]
gi|320660852|gb|EFX28298.1| nitrogen regulation protein NR(I) [Escherichia coli O55:H7 str.
USDA 5905]
gi|323155094|gb|EFZ41282.1| nitrogen regulation protein NR [Escherichia coli EPECa14]
gi|323174266|gb|EFZ59893.1| nitrogen regulation protein NR [Escherichia coli LT-68]
gi|323380782|gb|ADX53050.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Escherichia coli KO11]
gi|323934355|gb|EGB30768.1| nitrogen regulation protein NR(I) [Escherichia coli E1520]
gi|323943763|gb|EGB39860.1| nitrogen regulation protein NR(I) [Escherichia coli H120]
gi|324115638|gb|EGC09576.1| nitrogen regulation protein NR(I) [Escherichia coli E1167]
gi|331061966|gb|EGI33889.1| nitrogen regulation protein NR(I) [Escherichia coli TA271]
gi|331077076|gb|EGI48291.1| nitrogen regulation protein NR(I) [Escherichia coli H299]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|328887223|emb|CCA60462.1| putative two-component system response regulator [Streptomyces
venezuelae ATCC 10712]
Length = 263
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD+ +R+ + AL + GY V +G + + R LLL D+++P +DGI
Sbjct: 37 TILLVEDDEVIRKSVAMALERYGYHVSVAGDGLTGLELFRAGQHDLLLLDVMLPALDGIG 96
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E ++ ++ + KP LV + LL
Sbjct: 97 LCRRIRE-TSTAPILMMSARGDALDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRR 152
>gi|291523694|emb|CBK89281.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale DSM
17629]
Length = 231
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ +R + L GY V NG K +E +SL++ DI+MP + GI+
Sbjct: 3 KILIVEDDETIRNGIKTLLELQGYYVDIAVNGVDGLKKF-DETYSLVIMDIIMPLLSGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ E + ++F+T ++ L KPF +L++ V LL +N
Sbjct: 62 ACKKLREE-SSVPILFLTAKSSEIDIMQGFEVGGDDYLVKPFSNMELISRVKALLRRRN 119
>gi|197106970|ref|YP_002132347.1| response regulator CenR [Phenylobacterium zucineum HLK1]
gi|196480390|gb|ACG79918.1| response regulator CenR [Phenylobacterium zucineum HLK1]
Length = 231
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 49/117 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +DD D+R + + L G+E + E L+L D+ +P+MDG
Sbjct: 9 KTLLIVDDDQDLRGAIAEQLQAEGFETIEAPTAGEGVRLASEAKPDLVLLDVDLPDMDGR 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R+ + V+ +T AA + ++KP+ L+ + L
Sbjct: 69 QACRQMRQNGVQCPVIMLTAAAADEDTVEGLEAGANDYVTKPYKFAVLLARIRAQLR 125
>gi|332705093|ref|ZP_08425175.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
gi|332356043|gb|EGJ35501.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
Length = 428
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L +A+ +G+E++ +G +A D+ L+L D++MP MDG E
Sbjct: 10 TILIVDDNPTNLKVLSEAIANSGWEILVATDGETAIDQSEYATPDLILLDVIMPVMDGFE 69
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ V+F+T + ++KPF +++ + L +
Sbjct: 70 TCRRLKSNPATNEIPVIFMTALNDTVDKIKGLSLGAVDYITKPFQTEEVLARLKVHLQL 128
>gi|297623818|ref|YP_003705252.1| winged helix family two component transcriptional regulator
[Truepera radiovictrix DSM 17093]
gi|297164998|gb|ADI14709.1| two component transcriptional regulator, winged helix family
[Truepera radiovictrix DSM 17093]
Length = 225
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++K +L+ ED+ ++ +F+ L YE V +G + K RE L++ D+++P
Sbjct: 1 MDRKPLVLIIEDEKEIAKFIDLELQAESYETVVTYDGVTGLSKFRELNPDLVVLDLMLPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ARR + + ++ +T +V L KPF + +L+ V L
Sbjct: 61 LDGLEVARRVRK-TSNTPIIILTAKDSVDDKVLGLDSGADDYLVKPFSIEELLARVRAHL 119
Query: 119 TIKN 122
N
Sbjct: 120 RRVN 123
>gi|261880416|ref|ZP_06006843.1| DNA-binding response regulator [Prevotella bergensis DSM 17361]
gi|270332884|gb|EFA43670.1| DNA-binding response regulator [Prevotella bergensis DSM 17361]
Length = 232
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++KI LL EDD+++ L + L GY V C +G + Y + ++ F + + D++MP+
Sbjct: 1 MDEKIKILLCEDDENLGTLLCEYLIAKGYNAVLCPDGEAGYKEFTKDKFDMCVLDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ +++ + ++F+T + ++KPF + +LV V +L
Sbjct: 61 KDGFSLAQDIRQINSQIPIIFLTARVQKEDVLEGFDKGADDYITKPFSMEELVKRVEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|253569328|ref|ZP_04846738.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251841347|gb|EES69428.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1324
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ DM F+ + L Y V++ NG A + E +L+++DI+MPEMDG+EL
Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T + + + KPF + L V LL+ +
Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSNR 1199
>gi|218692154|ref|YP_002400366.1| nitrogen regulation protein NR(I) [Escherichia coli ED1a]
gi|218429718|emb|CAR10679.2| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli ED1a]
gi|222035580|emb|CAP78325.1| Nitrogen regulation protein NR(I) [Escherichia coli LF82]
gi|312948438|gb|ADR29265.1| nitrogen regulation protein NR(I) [Escherichia coli O83:H1 str. NRG
857C]
gi|315300253|gb|EFU59490.1| nitrogen regulation protein NR [Escherichia coli MS 16-3]
gi|320196908|gb|EFW71530.1| Nitrogen regulation protein NR(I) [Escherichia coli WV_060327]
gi|324006854|gb|EGB76073.1| nitrogen regulation protein NR [Escherichia coli MS 57-2]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|197302214|ref|ZP_03167273.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
29176]
gi|197298645|gb|EDY33186.1| hypothetical protein RUMLAC_00941 [Ruminococcus lactaris ATCC
29176]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|170682005|ref|YP_001746198.1| nitrogen regulation protein NR(I) [Escherichia coli SMS-3-5]
gi|187776072|ref|ZP_02800320.2| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC4196]
gi|188024761|ref|ZP_02773873.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4113]
gi|189010238|ref|ZP_02805779.2| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC4076]
gi|189402181|ref|ZP_02780546.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4401]
gi|189403083|ref|ZP_02793163.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4486]
gi|189404029|ref|ZP_02786770.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4501]
gi|189404865|ref|ZP_02811718.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC869]
gi|189405843|ref|ZP_02824575.2| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC508]
gi|193067986|ref|ZP_03048951.1| nitrogen regulation protein NR [Escherichia coli E110019]
gi|208806654|ref|ZP_03248991.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4206]
gi|208812477|ref|ZP_03253806.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4045]
gi|208818418|ref|ZP_03258738.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4042]
gi|209399991|ref|YP_002273384.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4115]
gi|217325708|ref|ZP_03441792.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
TW14588]
gi|291285278|ref|YP_003502096.1| Nitrogen regulation protein NR [Escherichia coli O55:H7 str.
CB9615]
gi|301027910|ref|ZP_07191201.1| nitrogen regulation protein NR [Escherichia coli MS 196-1]
gi|331644598|ref|ZP_08345717.1| nitrogen regulation protein NR(I) [Escherichia coli H736]
gi|331675327|ref|ZP_08376077.1| nitrogen regulation protein NR(I) [Escherichia coli TA280]
gi|331679976|ref|ZP_08380638.1| nitrogen regulation protein NR(I) [Escherichia coli H591]
gi|170519723|gb|ACB17901.1| nitrogen regulation protein NR(I) [Escherichia coli SMS-3-5]
gi|187769198|gb|EDU33042.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC4196]
gi|188016748|gb|EDU54870.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4113]
gi|189001516|gb|EDU70502.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC4076]
gi|189357214|gb|EDU75633.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4401]
gi|189362644|gb|EDU81063.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4486]
gi|189367911|gb|EDU86327.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4501]
gi|189373254|gb|EDU91670.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC869]
gi|189378090|gb|EDU96506.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC508]
gi|192958606|gb|EDV89044.1| nitrogen regulation protein NR [Escherichia coli E110019]
gi|208726455|gb|EDZ76056.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4206]
gi|208733754|gb|EDZ82441.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4045]
gi|208738541|gb|EDZ86223.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4042]
gi|209161391|gb|ACI38824.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
EC4115]
gi|217321929|gb|EEC30353.1| nitrogen regulation protein NR [Escherichia coli O157:H7 str.
TW14588]
gi|290765151|gb|ADD59112.1| Nitrogen regulation protein NR [Escherichia coli O55:H7 str.
CB9615]
gi|299878992|gb|EFI87203.1| nitrogen regulation protein NR [Escherichia coli MS 196-1]
gi|320191041|gb|EFW65691.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
EC1212]
gi|320639206|gb|EFX08833.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
G5101]
gi|320649918|gb|EFX18426.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H- str. H
2687]
gi|320655225|gb|EFX23171.1| nitrogen regulation protein NR(I) [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320666011|gb|EFX33030.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
LSU-61]
gi|326338128|gb|EGD61958.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
1044]
gi|326342577|gb|EGD66350.1| Nitrogen regulation protein NR(I) [Escherichia coli O157:H7 str.
1125]
gi|331036060|gb|EGI08296.1| nitrogen regulation protein NR(I) [Escherichia coli H736]
gi|331067387|gb|EGI38792.1| nitrogen regulation protein NR(I) [Escherichia coli TA280]
gi|331072302|gb|EGI43635.1| nitrogen regulation protein NR(I) [Escherichia coli H591]
Length = 472
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123
>gi|150003189|ref|YP_001297933.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|254882475|ref|ZP_05255185.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|319640424|ref|ZP_07995146.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|149931613|gb|ABR38311.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|254835268|gb|EET15577.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|317387911|gb|EFV68768.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1386
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++++ +++ L Y ++ NG A + + ++ L+++D++MPEMDG+E
Sbjct: 1136 TILLVEDNEELLALMVRLLHGK-YHILKAANGTEALEILAKQEVDLIVSDVMMPEMDGME 1194
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + ++ +T + + + + KP L L +++ LL +
Sbjct: 1195 LCRRVKTQFETCHIPLILLTAKTSDEDHVEGYESGADGYICKPLRLSVLFAKIDNLLKRR 1254
>gi|149375578|ref|ZP_01893348.1| response regulator, OmpR-family protein [Marinobacter algicola
DG893]
gi|149360283|gb|EDM48737.1| response regulator, OmpR-family protein [Marinobacter algicola
DG893]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ ED+ + + + G V C+ G + ++ RE L++ D+++P MD
Sbjct: 1 MTRNVLIVEDNPGIGELVRMHVADLGMNAVLCDRGDTGLERFREGDIDLVVLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + V+ +T + L+KPF + +L V L
Sbjct: 61 GLSVCREIRSGPGYVPVLMLTAKSTELDRVLGLEMGADDYLTKPFSVAELSARVKALFRR 120
>gi|121595048|ref|YP_986944.1| two component heavy metal response transcriptional regulator
[Acidovorax sp. JS42]
gi|120607128|gb|ABM42868.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidovorax sp. JS42]
Length = 227
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AGY NGA + L++ D+++P ++G +
Sbjct: 2 KILIVEDEPKTGAYLRQGLSEAGYSPDLVPNGADGLHMAIHGQYDLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|86750565|ref|YP_487061.1| two component transcriptional regulator [Rhodopseudomonas palustris
HaA2]
gi|86573593|gb|ABD08150.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris HaA2]
Length = 257
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 30 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 90 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 146
>gi|88798394|ref|ZP_01113979.1| putative two-component system sensory histidine kinase. [Reinekea sp.
MED297]
gi|88778834|gb|EAR10024.1| putative two-component system sensory histidine kinase. [Reinekea sp.
MED297]
Length = 1090
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
K+L+ +DD L K L G+ V +NG A DK+ ++ +L+L DI+MP MDG
Sbjct: 965 KVLVVDDDLRNTYTLSKILSNEGFRVSIADNGQLALDKLSKDSNIALILMDIMMPVMDGY 1024
Query: 63 ELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E R + ++ +T A + L KP L L+ +V +
Sbjct: 1025 ETIARIRAQHSETLPIIALTAKAMPEDRQKCLSAGADDYLPKPVDLEQLLVKVRGWI 1081
Score = 87.9 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD +L KA K G + G A +P ++ D+ +P++DG E+
Sbjct: 806 LIIEDDPSFAAYLEKAARKQGMSALVTGYGLQALSYCLRKPPGAVILDLGLPDIDGCEIL 865
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ + ++ V I+ A + + L+KP +L L
Sbjct: 866 QVLQNLQHHRNIPVHVISALDDPA---RAMQLGAEEYLAKPINLEQL 909
>gi|331660419|ref|ZP_08361353.1| nitrogen regulation protein NR(I) [Escherichia coli TA206]
gi|331052368|gb|EGI24405.1| nitrogen regulation protein NR(I) [Escherichia coli TA206]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|294339068|emb|CAZ87417.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
Length = 240
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L L K G V + +G + + L++ D+++P DG+
Sbjct: 6 HILIVDDDGEIRNLLSAYLQKNGLRVTAVGDGKAMERALVAARIDLIVLDLMLPGDDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ D+ V+ +T + L+KPF R+L+ + +L
Sbjct: 66 LCRQLRAK-SDIPVLMLTARSDETDRVVGLEMGADDYLTKPFSARELLARIKVILRR 121
>gi|237786475|ref|YP_002907180.1| two-component system response regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237759387|gb|ACR18637.1| two-component system, response regulator [Corynebacterium
kroppenstedtii DSM 44385]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED + + L L K G++V+ +G + + + S++L D+++P M G E+
Sbjct: 4 VLIVEDQETLSEPLAFLLRKEGFDVIIAPDGPTGLREFSQHEISIVLLDLMLPGMSGTEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ +T ++KP+ R+L+ + +L
Sbjct: 64 CKKLRQ-SSTVPIIMVTARDTEMDKIVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|269119156|ref|YP_003307333.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
gi|268613034|gb|ACZ07402.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
Length = 230
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + + L K Y V +G D + ++ DI++P+ DG+
Sbjct: 2 KILIVEDEIMIAEAVAQVLRKNNYSVDIAADGEDGLDCALSGIYDAVILDIMLPKRDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + V+ +T + L KPF + +L+ + L K
Sbjct: 62 VLKLLRESKIPVPVILLTAKSQTEDKVQGLDFGADDYLEKPFQMEELLARLRALTRRK 119
>gi|218128598|ref|ZP_03457402.1| hypothetical protein BACEGG_00168 [Bacteroides eggerthii DSM 20697]
gi|317475598|ref|ZP_07934859.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|217989322|gb|EEC55636.1| hypothetical protein BACEGG_00168 [Bacteroides eggerthii DSM 20697]
gi|316908168|gb|EFV29861.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ V+F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPVIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|119487283|ref|ZP_01621034.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
gi|119455838|gb|EAW36973.1| Putative diguanylate cyclase (GGDEF domain) [Lyngbya sp. PCC 8106]
Length = 519
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D + R L L + GY+V N+G A + L+L DI+MP++DG
Sbjct: 15 KILVVDDLPENLRLLQDILVQQGYDVRFANSGKLALLSLSRFQPDLILLDIMMPDLDGFT 74
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++ V+F++ + ++KPF +++ + ++++
Sbjct: 75 VCQQLKANRETENIPVIFMSALDDGSNKVKGFQVGGNDYITKPFITEEVLARIRYQISLQ 134
>gi|148654494|ref|YP_001274699.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
gi|148566604|gb|ABQ88749.1| response regulator receiver sensor signal transduction histidine
kinase [Roseiflexus sp. RS-1]
Length = 407
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + + L +AGY + + A A PF L++ D ++P+ G+++
Sbjct: 7 ILIVEDDPTIASLVGIVLREAGYRTLHADTAADALRLAETNPFDLVVLDWMLPDTPGVQI 66
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E L ++ +T ++ + LSKPF++ +L+ V LL I+
Sbjct: 67 CTALKERAGRRFLPILMLTAKGELSDRVTALDAGVDDYLSKPFYIEELMARVRALLRIR 125
>gi|26111063|gb|AAN83246.1|AE016770_46 Nitrogen regulation protein NR(I) [Escherichia coli CFT073]
Length = 489
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140
>gi|134299848|ref|YP_001113344.1| two component sigma-54 specific Fis family transcriptional
regulator [Desulfotomaculum reducens MI-1]
gi|134052548|gb|ABO50519.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum reducens MI-1]
Length = 454
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ M L K L + GY+V + G D +R+E SL++ D+ MPEMDG+E
Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ +A +L P L ++ IT + ++ ++KPF L +L + + L
Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQAL 120
>gi|115523445|ref|YP_780356.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115517392|gb|ABJ05376.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 240
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L GY V + + + A K++ F LL+ D++MP G +
Sbjct: 20 HLLLVDDDRRIRDLLSRFLASEGYRVTTAKDASDARAKLQGLHFDLLILDVMMPGETGFD 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR LD + ++ +T + ++KPF R+L+ + +L
Sbjct: 80 LARSIR-LDSAVPIVMLTARHEPESRIEGLQIGADDYVAKPFEPRELLLRIGNILKR 135
>gi|328861007|gb|EGG10111.1| hypothetical protein MELLADRAFT_115552 [Melampsora larici-populina
98AG31]
Length = 2085
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+D+DDMR F+ L + Y V ++G AY + L+++D++MP ++G E
Sbjct: 1256 TILIADDNDDMRSFVRSVLSRY-YTVAEASDGLEAYHWAKAHHPDLVVSDVMMPALNGFE 1314
Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R DPD V+ ++ A + + A L KPF ++LV +N L +
Sbjct: 1315 LLKRLK-TDPDTAGISVILLSAHAGSEIRIEGLAEGADDYLVKPFEAKELVARINTHLQL 1373
Score = 110 bits (277), Expect = 7e-23, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 14/129 (10%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--------PFSLLLTDIV 55
+L+ ED+ + + + L GY V +G D + E+ ++L DI
Sbjct: 1953 HVLVVEDNLINVKVIKRQLSLKGYSVSVAMDGRQGLDILYEDDQHPSELGRIGIVLMDIQ 2012
Query: 56 MPEMDGIELARRATELDPD------LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
MP M+G++ + V+ +TG A A + KP+ + D
Sbjct: 2013 MPVMNGLDAITELRASEKTGKVKQRYPVIAVTGNARKEQTEQFLASGFDDICVKPYKIED 2072
Query: 110 LVNEVNRLL 118
+ N + LL
Sbjct: 2073 VQNRMEALL 2081
>gi|283852522|ref|ZP_06369790.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
gi|283572130|gb|EFC20122.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio sp. FW1012B]
Length = 671
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ R F ++AL K G+ V + +G A + + PF L+L DI MP ++G+E
Sbjct: 550 RILLAEDEPVNRIFTVRALQKLGHSVETAADGREALLLLGQSPFDLVLMDIQMPRLNGLE 609
Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + + V+ +T +A + + ++KPF +LV + R L
Sbjct: 610 ATRMIRSGQVPGIATTIPVVALTAYAMDSDRERGLDAGMDEYVTKPFEPWELVEAMERAL 669
>gi|229828805|ref|ZP_04454874.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
14600]
gi|229791968|gb|EEP28082.1| hypothetical protein GCWU000342_00887 [Shuttleworthia satelles DSM
14600]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDG 61
QKI++ +D+ +R+ + L + GY+VV +G A D ++ L++ D+++P++ G
Sbjct: 11 QKIMVVDDEMRIRKIVRDFLVRDGYDVVEAQDGEEALDLFYQDHEIGLIILDVMLPKLSG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++AR E + ++ +T + + +SKPF + LV V +L
Sbjct: 71 FDVAREIRE-TSKVPIVILTAKSDEQDELQGFDIGVDEYISKPFSPKTLVARVQAILRR 128
>gi|271961705|ref|YP_003335901.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270504880|gb|ACZ83158.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 222
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L L G+ V ++G E + +++ D+++P M+G
Sbjct: 2 RVLLVEDEKRLADLLKGGLAGEGFAVDVAHDGRDGLWMASENVYDVIVLDVMLPRMNGYT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T V ++ LSKPF L+ + L+
Sbjct: 62 VCARLRDAENWTPILMLTAKDGVHDEAEALDTGADDFLSKPFSYVVLLARLRALIRR 118
>gi|254470999|ref|ZP_05084402.1| response regulator in two-component regulatory system with EnvZ,
OmpR family [Pseudovibrio sp. JE062]
gi|211960141|gb|EEA95338.1| response regulator in two-component regulatory system with EnvZ,
OmpR family [Pseudovibrio sp. JE062]
Length = 239
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ +L+ +DD+++ L GY V + N+ A + + L++ DI++P +G
Sbjct: 5 NKTLLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L +R + + ++ I+ L KPF+ R+L + +
Sbjct: 65 LTLCQRVRQ-TSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRR 122
>gi|159900549|ref|YP_001546796.1| two component transcriptional regulator [Herpetosiphon aurantiacus
ATCC 23779]
gi|159893588|gb|ABX06668.1| two component transcriptional regulator, winged helix family
[Herpetosiphon aurantiacus ATCC 23779]
Length = 248
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+A+DD + R + AL Y++V+ +NG A R+ + LLL D++MP +DG
Sbjct: 19 RKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGF 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D+ ++ IT ++KPF +L V ++
Sbjct: 79 TVTERIRAR-SDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRR 135
>gi|30248361|ref|NP_840431.1| response regulator [Nitrosomonas europaea ATCC 19718]
gi|30138247|emb|CAD84255.1| possible Response regulators consisting of a CheY-like receiver
domain and a HTH DNA-binding [Nitrosomonas europaea ATCC
19718]
Length = 223
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + + + L AGY V N ASA +REE F L + DI +P++DG+
Sbjct: 2 RILVVEDDSLVASGIKQGLTNAGYTVDVARNAASAERHLREENFDLAVVDIGLPDIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R L V+ +T ++ ++KPF L +L+ + L+ +
Sbjct: 62 LVQRLRHRKMCLPVLVLTARGSMEDTIAGLDIGADDYMTKPFRLPELIARIRALIRRAH 120
>gi|312886562|ref|ZP_07746170.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311300965|gb|EFQ78026.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ ++ + + L G+E+ +G +A + F L++ D+++P MDGI+L
Sbjct: 3 VLLVEDEPNIVSVIKRGLADFGFEISVATDGLTALQMTIDHQFDLVILDVMLPSMDGIQL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D ++ ++ +T + + KPF + +L + LL
Sbjct: 63 CKHIRERDENIPILMLTALDSTENIVTGLNSGADDYMVKPFKMIELATRLKTLLRR 118
>gi|260870584|ref|YP_003236986.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O111:H- str.
11128]
gi|257766940|dbj|BAI38435.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O111:H- str.
11128]
gi|323177878|gb|EFZ63462.1| nitrogen regulation protein NR [Escherichia coli 1180]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|255279926|ref|ZP_05344481.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
gi|255269699|gb|EET62904.1| regulatory protein VanR [Bryantella formatexigens DSM 14469]
Length = 236
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD D+R + L Y V NG + + + L++ DI+MP M G+
Sbjct: 6 VLIIEDDADIREGVRILLESENYCVREAENGRKGLEMLEDTT-DLVILDIMMPGMSGLRT 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+F+T A + L KPF +L+ V LL
Sbjct: 65 CEEIRRV-SNVPVLFLTAKAQESDKLIGLMAGGDDYLPKPFSYAELLGRVKALLRR 119
>gi|188578983|ref|YP_001915912.1| two-component system regulatory protein (response regulator)
required for AvrXa21 activity R2 (raxR2) [Xanthomonas
oryzae pv. oryzae PXO99A]
gi|188523435|gb|ACD61380.1| two-component system regulatory protein (response regulator)
required for AvrXa21 activity R2 (raxR2) [Xanthomonas
oryzae pv. oryzae PXO99A]
Length = 223
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 52/113 (46%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
ED+ +R L L + G+ V + +G RE PF + + D+ +P+M G+EL +
Sbjct: 2 VEDEAPLRETLAARLKREGFAVDAAQDGEEGLYMGREVPFDVGIIDLGLPKMSGMELIKA 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T ++ + L KPFH+ +L+ VN LL
Sbjct: 62 LRDEGKKFPVLILTARSSWQDKVEGLKQGADDYLVKPFHVEELLARVNALLRR 114
>gi|306521077|ref|ZP_07407424.1| two-component response regulator [Clostridium difficile QCD-32g58]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+ KIL+A+D+ ++R + L GYEV+ NG A + V L++ D+VM
Sbjct: 1 MNKEIPKKILVADDNPEIREIVEILLTGEGYEVIMATNGEEAVNLVDS-TIDLIILDVVM 59
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P G E ++F+T + + LSKPF +L++ V
Sbjct: 60 PVKTGFVACNEIREKT-TAPILFLTAKTQDSDKVIGFSAGGDDYLSKPFSYSELISRVKS 118
Query: 117 LLTI 120
LL
Sbjct: 119 LLRR 122
>gi|119469680|ref|ZP_01612549.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
gi|119446927|gb|EAW28198.1| DNA-binding response regulator [Alteromonadales bacterium TW-7]
Length = 241
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ EDD ++ + + L V + A K+ + P+ L+L DI +P+MDG+
Sbjct: 4 EKLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ E P V+ +T ++ + KPF R+L V L +
Sbjct: 64 SLCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHR 122
>gi|159045038|ref|YP_001533832.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
12]
gi|157912798|gb|ABV94231.1| two component transcriptional regulator [Dinoroseobacter shibae DFL
12]
Length = 239
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D+R L + L K G+ + A A + + E L++ DI+MP DG+ L
Sbjct: 9 ILIVDDARDIREPLAQYLRKQGFRTRLAAHAAEAREVLAEATIHLVVLDIMMPGEDGLSL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D V+ +T A L KPF+ R+L+ V +L
Sbjct: 69 CRWLVAHD-GPPVLLLTAMADETDRIVGLELGADDYLVKPFNPRELLARVRAILRR 123
>gi|6002654|gb|AAF00081.1|AF095713_1 response regulator CsrR [Streptococcus pyogenes]
Length = 228
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQPDGYEVIVEVNGREGLETALEGEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|41565|emb|CAA28808.1| unnamed protein product [Escherichia coli K-12]
Length = 468
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|154245747|ref|YP_001416705.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154159832|gb|ABS67048.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 232
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD D+ L + L G++V A + R+ ++ DI++P+
Sbjct: 1 MN--ILVVEDDSDIGAMLSRGLSAEGFDVTVVGRADEALEAARQYNPCAVVLDIMLPDGS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R E ++F++ V + + KPF +LV + L
Sbjct: 59 GIEVCRALREAGHSGPILFLSAKDEVRDRAEGLGAGADDYIVKPFEFAELVARLRAHL 116
>gi|85707845|ref|ZP_01038911.1| two-component response regulator [Erythrobacter sp. NAP1]
gi|85689379|gb|EAQ29382.1| two-component response regulator [Erythrobacter sp. NAP1]
Length = 289
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L +DD ++ + AL G+ ++G +A + + P L + DI MP+MDG+EL
Sbjct: 57 IALVDDDRNILTTVSIALQAEGFVTRLYSDGETALRALIDNPPDLAVFDIKMPKMDGMEL 116
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR P + V+F+T A ++KPF LR L + +L
Sbjct: 117 LRRVRAHQP-IPVIFLTSKDDEADEEAGLELGADDYIAKPFSLRLLTARIRAILRR 171
>gi|315659877|ref|ZP_07912736.1| response regulator [Staphylococcus lugdunensis M23590]
gi|315495165|gb|EFU83501.1| response regulator [Staphylococcus lugdunensis M23590]
Length = 229
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++I + +D+ D+R GYEV++ +NG A D + E+ L + DI+MPE DG
Sbjct: 2 ERIAIIDDEPDIRDICRTYFEFEGYEVLTASNGQEALDLL-EQDVDLFILDIMMPEKDGY 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ +++T + + KPF R+LV +L+
Sbjct: 61 AVIKEMKARQLDIPYIYLTAKTTESDTIYGLMLGADDYVKKPFSPRELVIRAKNILSR 118
>gi|289549491|ref|YP_003470395.1| Response regulator SaeR (Staphylococcus exoprotein expression
protein R) [Staphylococcus lugdunensis HKU09-01]
gi|289179023|gb|ADC86268.1| Response regulator SaeR (Staphylococcus exoprotein expression
protein R) [Staphylococcus lugdunensis HKU09-01]
Length = 226
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++I + +D+ D+R GYEV++ +NG A D + E+ L + DI+MPE DG
Sbjct: 2 ERIAIIDDEPDIRDICRTYFEFEGYEVLTASNGQEALDLL-EQDVDLFILDIMMPEKDGY 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ +++T + + KPF R+LV +L+
Sbjct: 61 AVIKEMKARQLDIPYIYLTAKTTESDTIYGLMLGADDYVKKPFSPRELVIRAKNILSR 118
>gi|253689341|ref|YP_003018531.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251755919|gb|ACT13995.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 242
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L+ L A Y NG D VR+ SL+L D+++P D
Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVDWVRQHSPSLILLDLMLPGCD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +T + + KPF R++V V LL
Sbjct: 69 GLTLCRTIRQ-FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRR 127
>gi|52080824|ref|YP_079615.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
14580]
gi|52786195|ref|YP_092024.1| hypothetical protein BLi02455 [Bacillus licheniformis ATCC 14580]
gi|319645218|ref|ZP_07999451.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
gi|52004035|gb|AAU23977.1| two-component response regulator YclJ [Bacillus licheniformis ATCC
14580]
gi|52348697|gb|AAU41331.1| putative protein [Bacillus licheniformis ATCC 14580]
gi|317393027|gb|EFV73821.1| hypothetical protein HMPREF1012_00484 [Bacillus sp. BT1B_CT2]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD+ + L L G+E + NNG+S K+ + LLL D ++P+
Sbjct: 1 MEKTKILIIEDDEAIADLLSYGLTSEGFETCTVNNGSSGMRKLDQFKPDLLLLDWMLPDC 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ ++ TE ++ ++ IT + + ++KPF LR++V + +L
Sbjct: 61 SGLDICKKVTE-SCNIPILMITAKSDITDKILGLEFGADDYITKPFDLREVVARIRTILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|77459117|ref|YP_348623.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77383120|gb|ABA74633.1| response regulator protein [Pseudomonas fluorescens Pf0-1]
Length = 233
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 49/118 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + GY V G ++ R P L++ D+++P +DG+++
Sbjct: 4 ILLVEDDTALAELISSYLERNGYSVSVIGRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R L ++ +T ++KP R L+ V LL +
Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121
>gi|320094294|ref|ZP_08026085.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319978760|gb|EFW10312.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 226
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L +ALG+ GYEV++ + G A V E L++ D+ +P+MDG++
Sbjct: 3 RVLLVEDDPAISEPLARALGREGYEVLASSTGREALTNV--EGADLVVLDLGLPDMDGLD 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+AR + ++ +T ++KPF L +L+ V LL
Sbjct: 61 VAREIRADGGRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 117
>gi|297171130|gb|ADI22141.1| HD-GYP domain [uncultured myxobacterium HF0200_19H16]
Length = 496
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 66/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + + + L GY V + +A D+++ EPF ++LTD+ MP+MDGIE
Sbjct: 13 RVLVVDDEEAVLDIVNEFLVLEGYYVKPVGSARAALDQLKTEPFDVILTDLKMPDMDGIE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R + +PD ++ +TGF V ++ + KPF D+V + R L +
Sbjct: 73 LIQRIRDWNPDPVLVMMTGFGTVETAIEAMKLGAFDYILKPFKPDDVVAVLKRALEKR 130
>gi|312889094|ref|ZP_07748653.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
gi|311298404|gb|EFQ75514.1| integral membrane sensor hybrid histidine kinase [Mucilaginibacter
paludis DSM 18603]
Length = 1401
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+DD R +L L + + ++ +NG + K ++++DI MPEM GIEL
Sbjct: 1141 VLLVEDNDDFRFYLKDNLKEVFF-LIEASNGREGWQKALAMHPDIIVSDISMPEMTGIEL 1199
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + V+ +T A ++KPF+ L++++ +LT+++
Sbjct: 1200 CKKLKSDKRTSHIPVVLLTALTGEADQIKGLEIGANDYMTKPFNFEILLSKIKNILTLRD 1259
>gi|227329104|ref|ZP_03833128.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 242
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L+ L A Y NG + VR+ SL+L D+++P D
Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATYWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +T + + KPF R++V V LL
Sbjct: 69 GLTLCRTIRQ-FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRR 127
>gi|225028286|ref|ZP_03717478.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
gi|224954332|gb|EEG35541.1| hypothetical protein EUBHAL_02558 [Eubacterium hallii DSM 3353]
Length = 225
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+D+ ++R + LG GY V + NG A + + + L++ DI+MP MDG + R+
Sbjct: 2 DDNPEIREIIQVLLGGEGYLVETAGNGVKALEMLENREYDLIILDIMMPGMDGYQTCRKM 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++F++ + + L+KPF +L++ L+
Sbjct: 62 REE-SNAPILFLSARTKDSDKTLGFSSGGDDYLAKPFSYNELISRAKALIRR 112
>gi|104783258|ref|YP_609756.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
entomophila L48]
gi|95112245|emb|CAK16972.1| heavy-metal DNA-binding response regulator CzrR [Pseudomonas
entomophila L48]
Length = 224
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L + L + GY V + G R++P+ L++ D+ +PE+DG
Sbjct: 2 RLLIIEDEPRTADYLQQGLRENGYVVDCAHTGTDGLHLARQQPYDLVILDVNLPELDGWG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++M +T +A L KPF +L+ + LL
Sbjct: 62 VLQRLRAE-SSTRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117
>gi|146300865|ref|YP_001195456.1| histidine kinase [Flavobacterium johnsoniae UW101]
gi|146155283|gb|ABQ06137.1| histidine kinase [Flavobacterium johnsoniae UW101]
Length = 1344
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ ED++++R++L+ L Y+V NG+ R+ L +TD++MP MDG
Sbjct: 1097 KEKILVIEDNNELRKYLVDYLSDY-YKVYEAENGSEGLKICRQIKPILCVTDVMMPVMDG 1155
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E R E + V+ +T + L KPF L + ++
Sbjct: 1156 LEFCRELKNDEFISHIPVVMLTALSENMDKVKGYDTGADGYLVKPFEPLLLKTVIENMIK 1215
Query: 120 IK 121
+
Sbjct: 1216 SR 1217
>gi|53803075|ref|YP_115242.1| nitrogen regulation protein NtrX [Methylococcus capsulatus str.
Bath]
gi|53756836|gb|AAU91127.1| putative nitrogen regulation protein NtrX [Methylococcus capsulatus
str. Bath]
Length = 455
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+R + L GY VV+ +NGA+A V+E L+L DI MP+ DGI L
Sbjct: 6 ILVVDDEPDIRGLVRDILTDEGYTVVAADNGAAARQAVQEHRPDLVLLDIWMPDEDGISL 65
Query: 65 ARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---TI 120
R E D V+ ++G A V ++ VL KP + L+ V R L +
Sbjct: 66 LREWLESGAIDCPVIMMSGHATVETAIEATRLGAHDVLEKPISMAKLLITVERALESVRL 125
Query: 121 KN 122
++
Sbjct: 126 RH 127
>gi|74314373|ref|YP_312792.1| nitrogen regulation protein NR(I) [Shigella sonnei Ss046]
gi|82546212|ref|YP_410159.1| nitrogen regulation protein NR(I) [Shigella boydii Sb227]
gi|157155281|ref|YP_001465351.1| nitrogen regulation protein NR(I) [Escherichia coli E24377A]
gi|170022118|ref|YP_001727072.1| nitrogen regulation protein NR(I) [Escherichia coli ATCC 8739]
gi|209921342|ref|YP_002295426.1| nitrogen regulation protein NR(I) [Escherichia coli SE11]
gi|218697581|ref|YP_002405248.1| nitrogen regulation protein NR(I) [Escherichia coli 55989]
gi|260846364|ref|YP_003224142.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O103:H2 str.
12009]
gi|300906185|ref|ZP_07123897.1| nitrogen regulation protein NR [Escherichia coli MS 84-1]
gi|300919051|ref|ZP_07135595.1| nitrogen regulation protein NR [Escherichia coli MS 115-1]
gi|300925943|ref|ZP_07141777.1| nitrogen regulation protein NR [Escherichia coli MS 182-1]
gi|301303336|ref|ZP_07209460.1| nitrogen regulation protein NR [Escherichia coli MS 124-1]
gi|301328184|ref|ZP_07221312.1| nitrogen regulation protein NR [Escherichia coli MS 78-1]
gi|309797824|ref|ZP_07692207.1| nitrogen regulation protein NR [Escherichia coli MS 145-7]
gi|73857850|gb|AAZ90557.1| response regulator for gln [Shigella sonnei Ss046]
gi|81247623|gb|ABB68331.1| response regulator for gln [Shigella boydii Sb227]
gi|157077311|gb|ABV17019.1| nitrogen regulation protein NR(I) [Escherichia coli E24377A]
gi|169757046|gb|ACA79745.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Escherichia coli ATCC 8739]
gi|209914601|dbj|BAG79675.1| two-component regulator protein [Escherichia coli SE11]
gi|218354313|emb|CAV01025.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli 55989]
gi|257761511|dbj|BAI33008.1| fused DNA-binding response regulator GlnG in two-component
regulatory system with GlnL: response regulator/sigma 54
interaction protein [Escherichia coli O103:H2 str.
12009]
gi|300401987|gb|EFJ85525.1| nitrogen regulation protein NR [Escherichia coli MS 84-1]
gi|300413831|gb|EFJ97141.1| nitrogen regulation protein NR [Escherichia coli MS 115-1]
gi|300417998|gb|EFK01309.1| nitrogen regulation protein NR [Escherichia coli MS 182-1]
gi|300841290|gb|EFK69050.1| nitrogen regulation protein NR [Escherichia coli MS 124-1]
gi|300845321|gb|EFK73081.1| nitrogen regulation protein NR [Escherichia coli MS 78-1]
gi|308118580|gb|EFO55842.1| nitrogen regulation protein NR [Escherichia coli MS 145-7]
gi|315254232|gb|EFU34200.1| nitrogen regulation protein NR [Escherichia coli MS 85-1]
gi|323182386|gb|EFZ67793.1| nitrogen regulation protein NR [Escherichia coli 1357]
gi|323959365|gb|EGB55026.1| nitrogen regulation protein NR(I) [Escherichia coli H489]
gi|323969734|gb|EGB65017.1| nitrogen regulation protein NR(I) [Escherichia coli TA007]
gi|324019790|gb|EGB89009.1| nitrogen regulation protein NR [Escherichia coli MS 117-3]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|322616467|gb|EFY13376.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619718|gb|EFY16593.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622586|gb|EFY19431.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629736|gb|EFY26511.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632543|gb|EFY29289.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636962|gb|EFY33665.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641500|gb|EFY38138.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646035|gb|EFY42551.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322649665|gb|EFY46096.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654035|gb|EFY50358.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658568|gb|EFY54830.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663425|gb|EFY59627.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322670159|gb|EFY66299.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322671396|gb|EFY67518.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322676753|gb|EFY72820.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682676|gb|EFY78695.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322686356|gb|EFY82338.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323195686|gb|EFZ80862.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199834|gb|EFZ84923.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323202827|gb|EFZ87863.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323209097|gb|EFZ94034.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323210902|gb|EFZ95768.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323217943|gb|EGA02658.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222390|gb|EGA06767.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226550|gb|EGA10755.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229745|gb|EGA13868.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323232970|gb|EGA17066.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323240705|gb|EGA24747.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243019|gb|EGA27040.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323247540|gb|EGA31494.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252711|gb|EGA36549.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259127|gb|EGA42771.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323259947|gb|EGA43575.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323268051|gb|EGA51530.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269901|gb|EGA53350.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 226
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ +++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIQWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|308235379|ref|ZP_07666116.1| response regulator receiver domain protein [Gardnerella vaginalis
ATCC 14018]
gi|311114873|ref|YP_003986094.1| response regulator [Gardnerella vaginalis ATCC 14019]
gi|310946367|gb|ADP39071.1| response regulator [Gardnerella vaginalis ATCC 14019]
Length = 246
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ D+ + + + G++ ++G SA L++ D+++P MDGI
Sbjct: 12 RTILVVEDEPDLATAIAQRIVARGWKARVVSDGVSAVKAALTLKPDLIIMDVMLPVMDGI 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR P + V+ +T A + + ++KPF R+L+ +L
Sbjct: 72 EATRRIVSRYP-IPVLMLTARDAESDKLAGLSAGADDYVTKPFSPRELIARCAAILRR 128
>gi|218128693|ref|ZP_03457497.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
gi|217989148|gb|EEC55463.1| hypothetical protein BACEGG_00264 [Bacteroides eggerthii DSM 20697]
Length = 1357
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R++L + LGK Y ++ NG A V+E+ L+LTD++MP MDG
Sbjct: 1110 KESILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDG 1168
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + V+ ++ + + + KPF + + ++ L
Sbjct: 1169 LQLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 1228
Query: 120 IK 121
+
Sbjct: 1229 TR 1230
>gi|191166395|ref|ZP_03028226.1| nitrogen regulation protein NR [Escherichia coli B7A]
gi|193063949|ref|ZP_03045035.1| nitrogen regulation protein NR [Escherichia coli E22]
gi|194428716|ref|ZP_03061253.1| nitrogen regulation protein NR [Escherichia coli B171]
gi|194438334|ref|ZP_03070425.1| nitrogen regulation protein NR [Escherichia coli 101-1]
gi|190903495|gb|EDV63213.1| nitrogen regulation protein NR [Escherichia coli B7A]
gi|192929414|gb|EDV83022.1| nitrogen regulation protein NR [Escherichia coli E22]
gi|194413299|gb|EDX29584.1| nitrogen regulation protein NR [Escherichia coli B171]
gi|194422771|gb|EDX38767.1| nitrogen regulation protein NR [Escherichia coli 101-1]
gi|320174858|gb|EFW49979.1| Nitrogen regulation protein NR(I) [Shigella dysenteriae CDC
74-1112]
gi|320185495|gb|EFW60263.1| Nitrogen regulation protein NR(I) [Shigella flexneri CDC 796-83]
Length = 472
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123
>gi|170760105|ref|YP_001787670.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169407094|gb|ACA55505.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 235
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAVEKFQGENYHMVIMDIMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|161486043|ref|NP_756672.2| nitrogen regulation protein NR(I) [Escherichia coli CFT073]
gi|227885396|ref|ZP_04003201.1| nitrogen regulation protein NR(I) [Escherichia coli 83972]
gi|300976533|ref|ZP_07173516.1| nitrogen regulation protein NR [Escherichia coli MS 45-1]
gi|227837654|gb|EEJ48120.1| nitrogen regulation protein NR(I) [Escherichia coli 83972]
gi|300410105|gb|EFJ93643.1| nitrogen regulation protein NR [Escherichia coli MS 45-1]
gi|307556011|gb|ADN48786.1| nitrogen regulation protein NR(I) [Escherichia coli ABU 83972]
gi|315292783|gb|EFU52135.1| nitrogen regulation protein NR [Escherichia coli MS 153-1]
Length = 469
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|160895063|ref|ZP_02075837.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
gi|156863494|gb|EDO56925.1| hypothetical protein CLOL250_02613 [Clostridium sp. L2-50]
Length = 239
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +D+ ++ L K GY V + G +A +V + ++L D+ MP++D
Sbjct: 16 MAQSILIVDDEKEIVSMLYCYFSKLGYTVYTATAGNAALKEVEK-KPDIILLDVNMPDID 74
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++F+T + + + KPF + +L + L
Sbjct: 75 GFTVCERIRD-YVSCPIIFLTARIEDSDKIKGFSIGADDYVIKPFSVDELEARIAAHLRR 133
Query: 121 K 121
+
Sbjct: 134 E 134
>gi|111020130|ref|YP_703102.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110819660|gb|ABG94944.1| transcriptional regulator [Rhodococcus jostii RHA1]
Length = 235
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + + L G+ VV+ G E+ F ++ +I++P ++G E
Sbjct: 2 RVLVVEDEARLANVVRRGLELEGFVVVTAATGEDGLWHATEDTFDAIVLNIMLPGLNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R ++ +T D+ L KPF LV + L+
Sbjct: 62 IVRALRAKQIWTPILMLTAKDGEYDQADAFDLGADDYLVKPFSFVVLVARLRALVRR 118
>gi|29348306|ref|NP_811809.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29340210|gb|AAO78003.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1326
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ DM F+ + L Y V++ NG A + E +L+++DI+MPEMDG+EL
Sbjct: 1082 VLIVEDNKDMLAFVARQLSPL-YHVITAENGIEALKVLEHEYINLVISDIMMPEMDGLEL 1140
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T + + + KPF + L V LL+ +
Sbjct: 1141 CEHLKSNLDYSHIPIILLTAKTTLESKIEGLEQGADAYIEKPFSVEYLRVNVANLLSNR 1199
>gi|85711499|ref|ZP_01042557.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145]
gi|85694651|gb|EAQ32591.1| Response regulator (CheY,wHTH domains) [Idiomarina baltica OS145]
Length = 225
Score = 141 bits (358), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD +M L + + E+ ++G D F L+L D+++P +D
Sbjct: 1 MTHSVLLIDDDHEMSAMLTELFKREAVELTVVDDGVKGLDAALNGDFELILLDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L +R + D V+ +T L KPF+ R+L+ V LL
Sbjct: 61 GMQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRR 120
>gi|307264989|ref|ZP_07546550.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
gi|306919974|gb|EFN50187.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD ++ +F+ L K YE + G A + E FS+++ DI++P++ G
Sbjct: 2 HKILVIEDDVNIAKFVKINLDKY-YETEIVHEGERALYLLERERFSVIVLDIMLPDISGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + + V+ +T + ++KPF+ R+LV V ++
Sbjct: 61 ELLKKIRAMKVNTPVVILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRR 118
>gi|304391317|ref|ZP_07373261.1| protein PetR [Ahrensia sp. R2A130]
gi|303296673|gb|EFL91029.1| protein PetR [Ahrensia sp. R2A130]
Length = 246
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L + L + G+ V S ++ + A +++ F LL+ D++MP G +
Sbjct: 26 HILVVDDDSRIRELLTRYLAEQGFRVSSASDASEARRQLQGLSFDLLIVDVMMPGERGTD 85
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E D D+ VM +T L+KPF R+L+ +N +L
Sbjct: 86 FTRSIRE-DLDVPVMMLTALGETDSRIAGLEAGADDYLAKPFSPRELLLRINAILKR 141
>gi|251773087|gb|EES53641.1| two component transcriptional regulator, winged helix family
[Leptospirillum ferrodiazotrophum]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ EDD D+ + L G+E ++G + R +L D+++P +D
Sbjct: 1 MAKKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + R + V+ +T + KPFH +++V V +L
Sbjct: 61 GLTVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVL 120
Query: 119 TIK 121
+
Sbjct: 121 RRR 123
>gi|254039081|ref|ZP_04873131.1| nitrogen regulation protein NR [Escherichia sp. 1_1_43]
gi|332282745|ref|ZP_08395158.1| nitrogen regulation protein NR(I) [Shigella sp. D9]
gi|226838517|gb|EEH70546.1| nitrogen regulation protein NR [Escherichia sp. 1_1_43]
gi|332105097|gb|EGJ08443.1| nitrogen regulation protein NR(I) [Shigella sp. D9]
Length = 489
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 26 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 85
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 86 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 140
>gi|297197902|ref|ZP_06915299.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197717155|gb|EDY61189.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL EDD +R + AL + ++V + G D++R +++ D+++P M
Sbjct: 1 MS-RVLLIEDDPAVREGVALALRRQNHDVDATATGEEGMDRLRAFRPDIVVLDLMLPGMT 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R +D L ++ T + KP R L + +L
Sbjct: 60 GLEVCRGIRAVDQTLPIIMATARGEEVDIVVGLEAGADDYVVKPVLARVLDARIRAVLRR 119
>gi|170769622|ref|ZP_02904075.1| nitrogen regulation protein NR(I) [Escherichia albertii TW07627]
gi|170121430|gb|EDS90361.1| nitrogen regulation protein NR(I) [Escherichia albertii TW07627]
Length = 469
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|119952783|ref|YP_950374.1| putative two-component system response regulator [Arthrobacter
aurescens TC1]
gi|119951913|gb|ABM10822.1| putative two-component system response regulator [Arthrobacter
aurescens TC1]
Length = 259
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+ EDD+D+R + + ++G+ V + ++G+ ++V+E ++ DI +P+ DG+E +R
Sbjct: 9 VIEDDEDIRAAVAEIFRQSGFAVHAASSGSEGLERVKEHNPDIVTIDIGLPDFDGLEASR 68
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D V+ ++G A A ++KPF R+L + +L
Sbjct: 69 RIR-TFSDAYVIIVSGRADEADALMGFEAGADDYITKPFRPRELRARIKAMLRR 121
>gi|116695586|ref|YP_841162.1| response regulator [Ralstonia eutropha H16]
gi|113530085|emb|CAJ96432.1| response regulator, OmpR-family [Ralstonia eutropha H16]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L ++G+ V +GA RE P+ L++ D+++P +DG +
Sbjct: 2 RILIVEDEPKAGDYLHKGLTESGFVVDLARDGADGLAHAREHPYDLIVLDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+F+T ++ + KPF +LV + +L
Sbjct: 62 VLRELRRER-DTPVLFLTARDELSDRLKGLELGADDYMVKPFAFAELVLRIRTILRR 117
>gi|149365314|ref|ZP_01887349.1| two-component system response regulator [Yersinia pestis CA88-4125]
gi|167469861|ref|ZP_02334565.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis FV-1]
gi|218929914|ref|YP_002347789.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis CO92]
gi|115348525|emb|CAL21464.1| two-component system response regulator [Yersinia pestis CO92]
gi|149291727|gb|EDM41801.1| two-component system response regulator [Yersinia pestis CA88-4125]
Length = 239
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DGI L
Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ ++ +T + KP+ R++V V +L
Sbjct: 74 CREIR-RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|332969535|gb|EGK08554.1| transcriptional regulatory protein OmpR [Desmospora sp. 8437]
Length = 245
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +L+ +DD + L L + V++ + A A+ + L+ DI+MPE
Sbjct: 17 MSAVNTVLVVDDDQSIVELLRDFLENENFRVITACDSAQAWAVFEQSTIHCLILDIMMPE 76
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G EL RR ++ ++F++ + + K ++V V +L
Sbjct: 77 QNGFELCRRIRAK-SNVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVL 135
Query: 119 TI 120
Sbjct: 136 RR 137
>gi|331645097|ref|ZP_08346208.1| transcriptional regulatory protein CreB [Escherichia coli M605]
gi|330909844|gb|EGH38354.1| two-component response regulator CreB [Escherichia coli AA86]
gi|331045854|gb|EGI17973.1| transcriptional regulatory protein CreB [Escherichia coli M605]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFGVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|290509521|ref|ZP_06548892.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
gi|289778915|gb|EFD86912.1| DNA-binding response regulator [Klebsiella sp. 1_1_55]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ EDD D L L + Y+VV +G S D L+L D+++P ++G
Sbjct: 3 SRRVLIIEDDADAAGVLEAYLRRENYDVVITGDGLSGLDMAHRWKPDLILLDVMLPGLNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + D+ V+ +T + + KP+H ++V V +L
Sbjct: 63 TEVLAGLRRKN-DVPVIMVTAMGDTPDRIGALRYGADDYVVKPYHPGEVVARVQAVLRRS 121
Query: 122 N 122
N
Sbjct: 122 N 122
>gi|257094697|ref|YP_003168338.1| response regulator receiver protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047221|gb|ACV36409.1| response regulator receiver protein [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 122
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+A+D+ ++ + L + G+EV+ +G A +VR E L+L D++MP M+
Sbjct: 1 MSKKILIADDEQNIVISIEFLLRREGFEVLVAGDGEEALARVRAERPDLVLLDVMMPRMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + +++ +T ++KPF ++L+ EV +LL
Sbjct: 61 GFDVCQALRADPDLSGTRILMLTAKGRDTEVSKGLGLGADGYMTKPFSTKELLAEVRKLL 120
>gi|254820268|ref|ZP_05225269.1| hypothetical protein MintA_10086 [Mycobacterium intracellulare ATCC
13950]
Length = 257
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+ V +NG A K +L+ DI++P++DG+
Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFERVNPDVLVLDIMLPDVDGLR 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D +F+T +V ++KPF L +LV + LL
Sbjct: 93 ILERVRQSDVYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 149
>gi|238061627|ref|ZP_04606336.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
gi|237883438|gb|EEP72266.1| two-component system response regulator [Micromonospora sp. ATCC
39149]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD + + + L + G EV +GA + L++ D++MP +DG+E+
Sbjct: 2 LVVDDDLTVSDVVRRYLEQDGCEVRLAADGADGLAAIAVHRPDLVVLDLMMPGIDGLEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR PDL V+ +T A ++KPF R+LV + +L
Sbjct: 62 RRIRRQLPDLPVIMLTALGEEADRVLGLEVGADDYVTKPFSPRELVLRIRSVLRR 116
>gi|225570609|ref|ZP_03779634.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
15053]
gi|225160622|gb|EEG73241.1| hypothetical protein CLOHYLEM_06711 [Clostridium hylemonae DSM
15053]
Length = 241
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ +M+ +++ + + G+ + ++G A ++ P L++ D++MP +DG +
Sbjct: 23 VLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDGFSV 82
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ A E+ ++ ++ +T ++KPF + L+ + N LL +
Sbjct: 83 CKLAREM-SNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRSS 139
>gi|194014661|ref|ZP_03053278.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
gi|194013687|gb|EDW23252.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Bacillus pumilus ATCC 7061]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M + K+L+ +D+ ++ + L + G V++ + + +E L++ DI++
Sbjct: 1 MPKLQSKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFNQEQPDLVILDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ + A ++KPF +++ V
Sbjct: 61 PDGEGYDICKQIRDV-SHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKA 119
Query: 117 LLTIKN 122
L +
Sbjct: 120 QLRRSS 125
>gi|169829969|ref|YP_001700127.1| response regulator [Lysinibacillus sphaericus C3-41]
gi|168994457|gb|ACA41997.1| Response regulator [Lysinibacillus sphaericus C3-41]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAEDD +R+ ++ L K + V+ +NG A D E F LL+ D +MP++ G+E
Sbjct: 2 KILLAEDDARLRKNIVYILRKEFHHVIEVDNGLDALDHTFSESFDLLILDWMMPQLSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + ++ +T + L KPF + +L+ + +L K
Sbjct: 62 VCKQLRDTGFSGGILMLTAKDDTSDIIQGLDSGADDYLVKPFKMEELLARIRAVLRRK 119
>gi|153938240|ref|YP_001391588.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152934136|gb|ABS39634.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295319616|gb|ADF99993.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD ++ + ++L K GY+ +G A +K + E + +++ D++MP M
Sbjct: 1 MEKLKILIVEDDVNINNMIKESLIKEGYDTGQAFHGLEAVEKFQGEDYHMVIMDVMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 61 DGIESMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|144900258|emb|CAM77122.1| two-component cell cycle transcriptional regulator ctrA, winged
helix family [Magnetospirillum gryphiswaldense MSR-1]
Length = 233
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD M + + L G V + G + + + ++L D+++P+MDG E
Sbjct: 2 RVLVVEDDRMMAQVIETMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ ++G L+KPF +LV + ++
Sbjct: 62 VLRRLRASRIETPVLILSGLTEPDKKIKGLGFGADDYLTKPFDKGELVARIQAIVRR 118
>gi|86131377|ref|ZP_01049975.1| two-component system response regulator [Dokdonia donghaensis
MED134]
gi|85817822|gb|EAQ38990.1| two-component system response regulator [Dokdonia donghaensis
MED134]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 66/121 (54%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +LLAED+ + + + ++L + V C +G A+ K +++ +L+ D++MP+M
Sbjct: 1 MSKINLLLAEDEPALGQIVKESLETRDFTVTLCPDGEIAFKKFKQDTPDILVLDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG LA+ ++ ++ ++F+T + A + + L KPF + +L+ + LL
Sbjct: 61 DGFTLAKEVRAVNDEIPIIFLTAKSQPADVVEGFSIGGNDYLKKPFSMEELIVRIKNLLN 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|329935641|ref|ZP_08285448.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
gi|329304902|gb|EGG48773.1| transcriptional regulatory protein [Streptomyces griseoaurantiacus
M045]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 8 LLIEDDDAIRTALELSLTRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 68 RRVRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 121
>gi|306827976|ref|ZP_07461243.1| two component response regulator [Streptococcus pyogenes ATCC
10782]
gi|304429895|gb|EFM32937.1| two component response regulator [Streptococcus pyogenes ATCC
10782]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ ++ +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARISAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|322436044|ref|YP_004218256.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX9]
gi|321163771|gb|ADW69476.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX9]
Length = 238
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL EDD +RR L L G+ + +G A K+ P+ +L D+ MP M GIE
Sbjct: 11 VLLVEDDRSIRRGLFATLSAMGFALGEAESGEEALLKLHVLPYDAVLMDLNMPGMGGIEA 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + P + ++ +T ++ ++KPF + +L + + +
Sbjct: 71 CRRVRKEYPHISILVVTVRDREEDKIEALDAGADDFVTKPFKMGELAARIRSAVRRQ 127
>gi|237725922|ref|ZP_04556403.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435730|gb|EEO45807.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1344
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1088 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1146
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1147 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1206
Query: 120 IK 121
+
Sbjct: 1207 SR 1208
>gi|237734082|ref|ZP_04564563.1| DNA-binding response regulator [Mollicutes bacterium D7]
gi|229382908|gb|EEO32999.1| DNA-binding response regulator [Coprobacillus sp. D7]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ IL+ ED+ ++ + + L GY V NNG + + V L + DI+MP M
Sbjct: 1 MNQDNILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ + E D ++F++ + ++KPF +L+ V+ L
Sbjct: 61 DGIEMTMKIRENY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLR 119
Query: 120 IKN 122
+
Sbjct: 120 RYH 122
>gi|228926973|ref|ZP_04090039.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228832708|gb|EEM78279.1| Two-component response regulator vanR [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 242
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V S NG A + + L + DI+MP+MDGIEL
Sbjct: 16 ILIVDDDQDIVRFMNVNLMQEGFKVFSAYNGEEALEIINNNSIQLAILDIMMPQMDGIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L ++F++ ++ + + K F + + V L
Sbjct: 76 CRRIREKHS-LPIIFLSAKSSDVDKVVGFSTGADDYIVKLFSTIEFIARVKAQLRR 130
>gi|19745448|ref|NP_606584.1| CovR [Streptococcus pyogenes MGAS8232]
gi|19747562|gb|AAL97083.1| CovR [Streptococcus pyogenes MGAS8232]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRATFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|89094628|ref|ZP_01167565.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
gi|89081098|gb|EAR60333.1| two-component system regulatory protein [Oceanospirillum sp. MED92]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ ED+ + + AL G+ + ++ F L + D+ +P+ +G
Sbjct: 5 NIHILIVEDEPSIADNVSIALQLDGFTSEHFILAQEGLNALQNSRFDLAIIDVGLPDFNG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL +R E ++ ++F+T + ++KPF R+L V +L
Sbjct: 65 FELCKRIRE-FSNIPIIFLTARSDEIDRILGLELGADDYVTKPFSPRELSTRVKAILRR 122
>gi|194336101|ref|YP_002017895.1| two component transcriptional regulator, winged helix family
[Pelodictyon phaeoclathratiforme BU-1]
gi|194308578|gb|ACF43278.1| two component transcriptional regulator, winged helix family
[Pelodictyon phaeoclathratiforme BU-1]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + FL L + + V +G S D + L++ D ++P + GIE
Sbjct: 2 RLLIIEDEPGIAGFLKDGLEEEYFAVDIAYDGKSGLDMALINEYDLIIVDWMIPAISGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + ++F+T + + KPF +L+ + L KN
Sbjct: 62 VCRQIRKTGNAVPILFLTAKDTLEDVIFGLDAGANDYIKKPFEFEELLARIRVQLRNKN 120
>gi|331017288|gb|EGH97344.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
str. M302278PT]
Length = 222
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R V+ +T + A + L+KPFH +L + LL +
Sbjct: 62 VLQRWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|290352215|dbj|BAI78818.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRL 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|326797266|ref|YP_004315086.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
gi|326548030|gb|ADZ93250.1| two component transcriptional regulator, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 298
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMP 57
M + + + +DD+D+R L L + ++V++ +G + + + L++ D+++P
Sbjct: 51 MTKSRYVYVVDDDNDIRSLLKSYLERHQFQVLTAESGEAFLEDFHADLNVELVILDVMLP 110
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG + R ++ V+ +T + L+KPF+ R+L+ + +
Sbjct: 111 GQDGFAVCRALRTQ-SEVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAI 169
Query: 118 LTI 120
L
Sbjct: 170 LRR 172
>gi|326383061|ref|ZP_08204750.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
gi|326198197|gb|EGD55382.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED++ + L L K G+E N+G+ A ++L D+++P +
Sbjct: 1 MT-HVLIVEDEESLADPLAFLLRKEGFEASIVNDGSEAVSTFERVNPDIVLLDLMLPGVS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + V+ +T + ++KP+ R+L+ + +L
Sbjct: 60 GTEICKTIRAK-SAVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|58338068|ref|YP_194653.1| two-component response regulator [Lactobacillus acidophilus NCFM]
gi|227902754|ref|ZP_04020559.1| response regulator [Lactobacillus acidophilus ATCC 4796]
gi|58255385|gb|AAV43622.1| two-component response regulator [Lactobacillus acidophilus NCFM]
gi|227869417|gb|EEJ76838.1| response regulator [Lactobacillus acidophilus ATCC 4796]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE V+ +G A K+ P +L++ D++MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPVTAYSGKEAITKLTTTPDIALMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|314933599|ref|ZP_07840964.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
gi|313653749|gb|EFS17506.1| DNA-binding response regulator ArlR [Staphylococcus caprae C87]
Length = 219
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RF+ L Y V +G + DK + + L++ D+++P ++G+++
Sbjct: 4 ILIVEDEQNLARFIELELKHEDYNVDIEYDGRTGLDKALNKSYDLIILDLMLPNINGLKI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ IT + KPF + +L+ + +L +
Sbjct: 64 CRQIRQEQS-TPIIIITAKGETYDKVAGLDYGADDYIVKPFDIEELLARIRAILRRQ 119
>gi|326772270|ref|ZP_08231555.1| DNA-binding response regulator [Actinomyces viscosus C505]
gi|326638403|gb|EGE39304.1| DNA-binding response regulator [Actinomyces viscosus C505]
Length = 238
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + + L +AG +C +G +A D VR +++ D+ +P MDG+E+
Sbjct: 12 VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLAALDLVRATAPDVVVLDLGLPGMDGVEV 71
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T A + ++KPF R+LV + LL
Sbjct: 72 CRQLR-TFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRR 126
>gi|251794486|ref|YP_003009217.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247542112|gb|ACS99130.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 240
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD MR L L + GY V G V+E ++L D+++P+MDG+
Sbjct: 3 KVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDGMG 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + +M ++ + V+ + + KPF + ++ V L+
Sbjct: 63 VCASIRER-SHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRR 118
>gi|167814783|ref|ZP_02446463.1| two component transcriptional regulator, winged helix family
protein [Burkholderia pseudomallei 91]
Length = 129
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD ++R L L + G EV ++ AS ++ E L++ D++MP +D
Sbjct: 1 MTTQILIVDDDQELRDLLRDYLVRQGIEVSVLHDAASLEKRLERERPDLIVLDLMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R+ D+ V+ +T A L KPF+ R+L+ +L
Sbjct: 61 GLTALRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARAQAVLRR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|153004853|ref|YP_001379178.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. Fw109-5]
gi|152028426|gb|ABS26194.1| response regulator receiver modulated metal dependent
phosphohydrolase [Anaeromyxobacter sp. Fw109-5]
Length = 357
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + LG+ GY V + ++ +A D R FSL+++D+ MP DG
Sbjct: 10 RILIVDDDTSVRDVIAVLLGEEGYAVTAVSSAEAALDAARLTDFSLVISDVRMPGKDGFW 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R EL PD V+ +T F + A L KP + DL+ + R L +
Sbjct: 70 LLERVRELHPDTAVIMLTAFGDTEAAVECLRNGAADYLLKPPKVTDLIRAIERALGRR 127
>gi|17232815|ref|NP_489363.1| hypothetical protein all5323 [Nostoc sp. PCC 7120]
gi|17134462|dbj|BAB77022.1| all5323 [Nostoc sp. PCC 7120]
Length = 610
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDDD + + + L K Y V +G A++ V + L+L D+V+P++DGI
Sbjct: 2 RILLVEDDDLLAQAMATTLTKQHYAVDIAADGEVAWELVSVCNYELILLDVVLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ + + ++ +T + + KPF ++L + LL N
Sbjct: 62 LCRQLRQAGYQMLILLLTAKDSQTDKILGLDTGADDYVVKPFDFQELSARIRALLRRGN 120
Score = 77.5 bits (191), Expect = 6e-13, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +D+ + FL + L G V + +D + E LL+ D+ +P ++GIE
Sbjct: 476 KIMIVDDNLHLLNFLHRYLEALGITVKALKEPQYFWDTLIEFSPDLLILDLEIPHINGIE 535
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + L V+F+ V A ++K LV ++ + L
Sbjct: 536 LCQVVRNDPYWQFLPVLFLVNNFNVNTFEKIFAVGADDWVNKSVIDSRLVAQILQHLER 594
Score = 45.1 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 24 KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLKVMFITGF 83
G +V ++ A + + +++ DI + E D + L R ++L P + ++ +T
Sbjct: 374 NLGIKVKITHDIAGSRTIIASLNPDVVILDIDI-EEDSLSLLRELSQLSPQIPILILTNQ 432
Query: 84 AAVALNPDSNAPKNAKVLSK 103
+ L K
Sbjct: 433 NNFIKRVEVARAGGCAFLPK 452
>gi|332798879|ref|YP_004460378.1| winged helix family two component transcriptional regulator
[Tepidanaerobacter sp. Re1]
gi|332696614|gb|AEE91071.1| two component transcriptional regulator, winged helix family
[Tepidanaerobacter sp. Re1]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ D+ L Y+V++ +G A + E ++L DI MP++D
Sbjct: 1 MRTKILIVDDEADIVAMLKGFFENRNYDVLTATDGIEAIKQ-SERQPDIILLDINMPQLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + RR + ++F+T A + + KPF + +L V L
Sbjct: 60 GLSVCRRIRD-YVSCPILFLTARIEDADKVKGFSVGGDDYILKPFSIIELEARVAAHLRR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|332704490|ref|ZP_08424578.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554639|gb|EGJ51683.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio africanus
str. Walvis Bay]
Length = 842
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED++ R ++ L G+EV + +G A + + +E F L+L D+ MP+M G E
Sbjct: 718 RILLAEDNEINRFLAVELLKGLGHEVTTVQDGRQALEILSKERFDLVLMDVQMPQMHGDE 777
Query: 64 LARRAT---ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ RR DP + ++ +T +A A LSKP +++L + R+
Sbjct: 778 VTRRIRAGEAGDPHVPIVALTAYALKGDRERFLAAGMDDYLSKPIDMQELERVLKRI 834
>gi|330505803|ref|YP_004382672.1| two component, sigma54 specific, fis family transcriptional
regulator [Pseudomonas mendocina NK-01]
gi|328920089|gb|AEB60920.1| two component, sigma54 specific, fis family transcriptional
regulator [Pseudomonas mendocina NK-01]
Length = 446
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 64/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++++ +D+ +R + + L +G+EV +C + A A V + ++++D+ MP D
Sbjct: 1 MSAQVIVVDDEAAIREAVQQWLELSGFEVRTCASAAEALAVVDRDFPGIVVSDVRMPGSD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L + ++D DL V+ +TG V + + + KPF L++ V R L
Sbjct: 61 GLQLLDKLLQIDSDLPVILVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRALDK 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|319654445|ref|ZP_08008532.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2]
gi|317393944|gb|EFV74695.1| hypothetical protein HMPREF1013_05152 [Bacillus sp. 2_A_57_CT2]
Length = 160
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +D+ D+ + + ++L + + +G A ++E ++ DI+MPEMD
Sbjct: 11 MEKTILVVDDERDIVKLITESLKFEQFNAIRAYSGKEALSILKENKIDFIVLDIMMPEMD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ R+ + ++ ++ ++ ++KPF +++L + +
Sbjct: 71 GLEVCRKIRKEY-NIPILLLSARNRDMDKIIGLEIGADDYMTKPFSIQELTSRIKAHFR 128
>gi|295090383|emb|CBK76490.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ ED+ ++ + L AGY V S +G + R L+L D+++P++D
Sbjct: 1 MAKTILIIEDEIAIQNIVRAFLEDAGYTVYSAGDGLEGIETFRRCDPDLVLLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + ++ +T A + KPF + ++ + +L
Sbjct: 61 GFAVCEILRKE-SRTPIIMLTARDDDASQMKGFDVLADDYIIKPFSMPLVLRRIEAVLRR 119
>gi|262392993|ref|YP_003284847.1| copper-sensing two-component system response regulator CpxR [Vibrio
sp. Ex25]
gi|262336587|gb|ACY50382.1| copper-sensing two-component system response regulator CpxR [Vibrio
sp. Ex25]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L + L G++V N+G + V + L+L D++MP+++G+E
Sbjct: 4 ILLIDDDIELTSLLKEVLSFEGFDVSEANDGEAGLAAV-NDKIDLILLDVMMPKLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKRLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|258541387|ref|YP_003186820.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-01]
gi|256632465|dbj|BAH98440.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-01]
gi|256635522|dbj|BAI01491.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-03]
gi|256638577|dbj|BAI04539.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-07]
gi|256641631|dbj|BAI07586.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-22]
gi|256644686|dbj|BAI10634.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-26]
gi|256647741|dbj|BAI13682.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-32]
gi|256650794|dbj|BAI16728.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653785|dbj|BAI19712.1| two component response regulator ChvI [Acetobacter pasteurianus IFO
3283-12]
Length = 237
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + L G+ V + +G SA + P L + DI MP MDG
Sbjct: 6 KQTIALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALQGLTAYPVDLAVLDIKMPRMDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL +R +L V+F++ ++KPF R L+ + LL
Sbjct: 66 MELLQRLR-TRSNLPVIFLSSKNEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRR 123
>gi|329922499|ref|ZP_08278103.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
gi|328942137|gb|EGG38417.1| transcriptional regulatory protein ResD [Paenibacillus sp. HGF5]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R + L + Y V + NG A + L++ D+++P+ G
Sbjct: 2 KKILVIDDEAAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + T + V+ ++ V ++KPF R+L+ + +L
Sbjct: 62 DLCKEITGKRA-VPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRR 118
>gi|325299930|ref|YP_004259847.1| two component transcriptional regulator, AraC family [Bacteroides
salanitronis DSM 18170]
gi|324319483|gb|ADY37374.1| two component transcriptional regulator, AraC family [Bacteroides
salanitronis DSM 18170]
Length = 915
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+ D+R ++ L + Y V+ +NG + + ++ D++MP MDG+
Sbjct: 667 ETVLVIDDNQDVRDYVRLLLERE-YRVLEASNGQEGLQQAMKYVPDAIICDVMMPVMDGM 725
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-- 118
E RR + VM +T + + KPF + L + L+
Sbjct: 726 ECCRRLKSEVQTSHIPVMMLTAYTMDEQKVQGYECGADSYILKPFSAKLLQVRLRNLIDN 785
Query: 119 TIK 121
+
Sbjct: 786 RRR 788
>gi|257790764|ref|YP_003181370.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|257474661|gb|ACV54981.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 49/118 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL +D++ + R + G AGY +GA E L++ D++MP MDG
Sbjct: 2 KKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E V+F++ + + KPF R+L+ + L
Sbjct: 62 TTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRR 119
>gi|307152144|ref|YP_003887528.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7822]
gi|306982372|gb|ADN14253.1| response regulator receiver modulated diguanylate cyclase
[Cyanothece sp. PCC 7822]
Length = 360
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + ++ L +GY +G A+++VR L+L D++MPEM+G+++
Sbjct: 55 ILVVDDLSKNLQLVVDILDHSGYATTFATSGQQAFERVRTAHPDLILLDLMMPEMNGLQV 114
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ ++F+T ++ ++KPF +L+ V L +K
Sbjct: 115 CEKLKSNQEYQEIPIIFLTASDEEGDLLEAFKLGAVDYVTKPFRAAELLARVKNHLELK 173
>gi|138893945|ref|YP_001124398.1| subtilin biosynthesis regulatory protein SpaR [Geobacillus
thermodenitrificans NG80-2]
gi|196250503|ref|ZP_03149194.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
gi|134265458|gb|ABO65653.1| Subtilin biosynthesis regulatory protein SpaR [Geobacillus
thermodenitrificans NG80-2]
gi|196209993|gb|EDY04761.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. G11MC16]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +DD+D+ + + L Y+V + ++G A + + F L++ DI+M +DG
Sbjct: 3 NKKILVVDDDEDICCTIKQYLELHHYQVETVHSGVEALKMI-NDDFDLIVLDIMMEGIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL + D ++F++ + A ++KPF L++L ++ L +
Sbjct: 62 MELCTIIRDR-VDYPIVFVSAKTLEEDKVQALAIGGDDYITKPFSLKELKARIDSHLRRE 120
>gi|194364065|ref|YP_002026675.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|194346869|gb|ACF49992.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
Length = 237
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY+V G E L++ DI +P+M+G E
Sbjct: 14 RVLVIDDETQIRRFLDISLRAQGYQVRQAATGQEGLQLAASEDMDLVILDIGLPDMEGHE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + V+ +T A + ++KPF ++L+ V LL ++
Sbjct: 74 VLEQLRQ-WSQVPVIMLTVRAGETEKVRALDTGANDYVTKPFGTQELMARVRALLRTRS 131
>gi|116074985|ref|ZP_01472246.1| two-component response regulator [Synechococcus sp. RS9916]
gi|116068207|gb|EAU73960.1| two-component response regulator [Synechococcus sp. RS9916]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD D+R+ + L GY+V ++ ++ + L++ D++MP DG+
Sbjct: 2 IWVVDDDPDLRQMVGTYLIDQGYDVRCLSDVKQFEARLEFQRPDLVVLDLMMPGDDGLTA 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + DL V+ +T L KPF R+L ++ +L ++
Sbjct: 62 LRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLGKPFLPRELSARIDAVLRRRS 119
>gi|222054285|ref|YP_002536647.1| response regulator receiver modulated serine phosphatase [Geobacter
sp. FRC-32]
gi|221563574|gb|ACM19546.1| response regulator receiver modulated serine phosphatase [Geobacter
sp. FRC-32]
Length = 383
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
M + +ILL +D + L + LG++ Y +S NG +A +P L+L DI MP+
Sbjct: 1 MERSRILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPD 59
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ RR E L ++ V+F++G A + ++KPF ++ V
Sbjct: 60 MDGYEVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQFDEMQARVTT 119
Query: 117 LLTIK 121
+ ++
Sbjct: 120 HVRLR 124
>gi|74317767|ref|YP_315507.1| two component heavy metal response transcriptional regulator
[Thiobacillus denitrificans ATCC 25259]
gi|74057262|gb|AAZ97702.1| Two component Heavy metal response Transcriptional regulator,
Winged helix family [Thiobacillus denitrificans ATCC
25259]
Length = 242
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ +G + + + L++ D+++P +DG +
Sbjct: 14 KILIVEDEPKTGAYLRQGLTEAGFVTDLARDGWDGLELAKSGHYDLMILDVMLPGLDGWQ 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+F+T V L KPF +L+ V+ L+
Sbjct: 74 VLEGVRRAGIGTPVLFLTARDRVEDRVKGLELGADDYLVKPFAFAELLARVHSLMRR 130
>gi|87301808|ref|ZP_01084642.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
gi|87283376|gb|EAQ75331.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 5701]
Length = 263
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD+DMR + G+ V + ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDEDMRELVAGHFEHGGFVVETADDGIKGQALALQASPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ IT L+KPF L +L+ V LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMITALGGTKDKVSGFNSGADDYLTKPFDLEELMVRVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|127514245|ref|YP_001095442.1| two component transcriptional regulator [Shewanella loihica PV-4]
gi|126639540|gb|ABO25183.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ L L G +V +NG E F ++ D+++P+MDG +
Sbjct: 6 ILIIEDNADVAGVLGDYLESQGAQVDYASNGELGLRLATEGHFDAIVLDLMLPKMDGYAV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
A+ + + ++ +T L+KPF L +L + L+ +
Sbjct: 66 AKALRQQGSSVPILMLTALDDKQDLLQGFHSGADDYLTKPFDLDELHVRLLALIKRQ 122
>gi|332968048|gb|EGK07135.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 240
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ILL +D++ + + L + GY + + G A D + + + L++ D+++P+ G
Sbjct: 5 RILLVDDEEGLLEMIRLLLEREGYSRIDTATKGQQARDLIDQNDYDLIVLDVMLPDGSGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + + + ++F+T A ++KPFH +LV + LL
Sbjct: 65 DLCQEIRK-TSKVPILFLTSRTADMDILVGFGYGGDDYVTKPFHALELVARIKALLRR 121
>gi|315125334|ref|YP_004067337.1| two-component system sensor histidine kinase/response
[Pseudoalteromonas sp. SM9913]
gi|315013847|gb|ADT67185.1| two-component system sensor histidine kinase/response
[Pseudoalteromonas sp. SM9913]
Length = 1329
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+K+L+ ED+++MR L+ Y ++ NNG + + ++L+D++MP MDG
Sbjct: 1070 NKKLLIVEDNEEMRELLVSLFSDN-YTCLTANNGEEGLVLCQTQMPDIVLSDVMMPTMDG 1128
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L + V+ ++ A L KPF L + V+ LL
Sbjct: 1129 YQLLSAIRSDISINHIPVLLLSAKADSRSRIKGLDLLADDYLCKPFEASLLKSRVHGLLG 1188
Query: 120 IKN 122
I++
Sbjct: 1189 IRD 1191
>gi|297159383|gb|ADI09095.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G + ++ R + + L D+++P +
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERDGFVVTAAPDGLTGLERFRADRPDIALLDVMVPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|290352249|dbj|BAI78835.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 146
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|266624372|ref|ZP_06117307.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
gi|288863787|gb|EFC96085.1| regulatory protein VanR [Clostridium hathewayi DSM 13479]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q+IL+A+D +++ L L GYEVV+ +G A ++ L++ D++MP
Sbjct: 1 MAQRILIADDSEEIIEILQILLTGEGYEVVTAGDGEEAVRLA-DDTIDLIILDVMMPVKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + ++F+T + + L+KPF +L++ LL
Sbjct: 60 GYVACSEIRKKTM-APILFLTARTQDSDKSMGFSAGGDDYLAKPFSYSELLSRCKSLLRR 118
>gi|256847496|ref|ZP_05552942.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
gi|256716160|gb|EEU31135.1| phosphate regulon transcriptional regulatory protein PhoB
[Lactobacillus coleohominis 101-4-CHN]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ F+ L GYE +G + + E F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLANFVNLELKHEGYETDVELDGRAGLEAALNEDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR E + ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREE-KNTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|254425145|ref|ZP_05038863.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196192634|gb|EDX87598.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL +DD ++ + L GY+VV+ NG A + E +++ D++MPEMDG
Sbjct: 23 KKLLLIDDDPNLILLVKDYLEFRGYQVVTAGNGREALTMLPELSPDMIICDVMMPEMDGY 82
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++F++ + KPF +LV +V L
Sbjct: 83 AFVEQIRQDPSKSWIPILFLSAKGQSQDRVKGLTTGADVYMVKPFEPEELVAQVESSLKQ 142
Query: 121 KN 122
N
Sbjct: 143 AN 144
>gi|332662093|ref|YP_004444881.1| winged helix family two component transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
gi|332330907|gb|AEE48008.1| two component transcriptional regulator, winged helix family
[Haliscomenobacter hydrossis DSM 1100]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N KIL+ +D+ D+ L L K GY+VV+ ++G A +E +L++ DI+MP++DG
Sbjct: 3 NIKILIVDDEPDILEILQYNLEKEGYQVVTASSGEEALVVAEKEQPNLIVLDIMMPKIDG 62
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R + F+T + ++KP R ++ + LL
Sbjct: 63 VEVCRILRTKPEFDRTAITFLTAREEDYSQIAALDVGGDDYITKPIRPRVFISRIKALLR 122
Query: 120 IKN 122
+
Sbjct: 123 RSD 125
>gi|291456488|ref|ZP_06595878.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
20213]
gi|291381765|gb|EFE89283.1| DNA-binding response regulator MtrA [Bifidobacterium breve DSM
20213]
Length = 240
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ ED+ + + + + G+ +GASA + L++ DI++P MDG+
Sbjct: 13 RTVLVVEDEPTLATAIAQRITAEGWTARVAGDGASAVQAALQLKPDLVIMDIMLPVMDGL 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E +R P + V+ +T ++KPF +R+L+ LL
Sbjct: 73 EATKRIVAERP-VPVLILTARDDETDKVIGLGAGADDYMTKPFSMRELIARCKALLRR 129
>gi|118619653|ref|YP_907985.1| two component sensory transduction protein RegX3 [Mycobacterium
ulcerans Agy99]
gi|183980840|ref|YP_001849131.1| two-component sensory transduction protein RegX3 [Mycobacterium
marinum M]
gi|118571763|gb|ABL06514.1| two component sensory transduction protein RegX3 [Mycobacterium
ulcerans Agy99]
gi|183174166|gb|ACC39276.1| two-component sensory transduction protein RegX3 [Mycobacterium
marinum M]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|86751280|ref|YP_487776.1| two component transcriptional regulator [Rhodopseudomonas palustris
HaA2]
gi|86574308|gb|ABD08865.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris HaA2]
Length = 241
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L GY V + +G A K+ F LL+ D++MP G +
Sbjct: 20 HLLLVDDDRRIRDLLSRFLASEGYRVTTAQSGRDARAKLAGLNFDLLILDVMMPGETGFD 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR + D+ ++ +T + ++KPF R+L+ + +L
Sbjct: 80 LARFIR-TESDVPIVMLTARHEAEARIEGLQLGADDYVAKPFEPRELLLRICNILKR 135
>gi|29831247|ref|NP_825881.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|81838270|sp|Q82EB1|CSEB_STRAW RecName: Full=Transcriptional regulatory protein CseB
gi|29608362|dbj|BAC72416.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|83589979|ref|YP_429988.1| two component transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83572893|gb|ABC19445.1| two component transcriptional regulator, winged helix family
[Moorella thermoacetica ATCC 39073]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD + L +AL GY+V NG A L++ DI++P +D
Sbjct: 1 MRARILVVDDDAKITSMLKRALTYEGYDVEIAANGHQALALA-ANNPDLIILDIMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+ + R+ + D+ ++ +T A L KPF L +
Sbjct: 60 GLAVCRQIRS-NSDIPILMLTARDDTADRVLGLDTGADDYLVKPFALEE 107
>gi|116621521|ref|YP_823677.1| two component transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116224683|gb|ABJ83392.1| two component transcriptional regulator, winged helix family
[Candidatus Solibacter usitatus Ellin6076]
Length = 245
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M+ +IL+ ED+ + L L GY+V G +A +++ E F +++ D+++P
Sbjct: 1 MS-RILVVEDELHLAEGLRFNLEAEGYQVEVVETGEAALERLVPGEPRFDVVVLDVMLPG 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG + + + +T A L+KPF L L+ + LL
Sbjct: 60 KDGFTVMSEMRHAGQFIPTLMLTARGHAEDILHGFAAGADDYLTKPFELAILIARIRGLL 119
Query: 119 TIK 121
+
Sbjct: 120 RRR 122
>gi|317476823|ref|ZP_07936066.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316906998|gb|EFV28709.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1420
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L Y V +GA A + + +++D++MP MDGIEL
Sbjct: 1169 ILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSVDFIISDLMMPVMDGIEL 1227
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR E + + +T + +S + L KPF L+ + +L +
Sbjct: 1228 SRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILENR 1286
>gi|290352241|dbj|BAI78831.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGVDDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|253687608|ref|YP_003016798.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
gi|251754186|gb|ACT12262.1| two component transcriptional regulator, winged helix family
[Pectobacterium carotovorum subsp. carotovorum PC1]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++RRF+ +AL G V + L++ D+ +P+ D
Sbjct: 1 MQATILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGLLEAATRKPDLIILDLGLPDGD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + L V+ ++ D+ L+KPF + +L+ + L
Sbjct: 61 GIDYIRDLRQ-WSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR 119
Query: 121 KN 122
+
Sbjct: 120 HS 121
>gi|297563468|ref|YP_003682442.1| two component transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847916|gb|ADH69936.1| two component transcriptional regulator, winged helix family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
Length = 221
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++ + F+ + L AGY+V++ +G L++ D+ +P + G E+
Sbjct: 3 ILVVEDEEGIVSFVRRGLETAGYQVLTAADGIDGLTMALSSDVDLVVLDLGLPGIPGEEV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR P + V+ +T AV+ + + KPF + +L+ V L
Sbjct: 63 LRRLRARRPSVPVIVLTAKDAVSDRVANLDAGADDYMVKPFSVSELLARVRARLR 117
>gi|218701433|ref|YP_002409062.1| nitrogen regulation protein NR(I) [Escherichia coli IAI39]
gi|218371419|emb|CAR19252.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator ; sigma54
interaction protein [Escherichia coli IAI39]
Length = 469
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|218129958|ref|ZP_03458762.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697]
gi|217988068|gb|EEC54393.1| hypothetical protein BACEGG_01541 [Bacteroides eggerthii DSM 20697]
Length = 1420
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L Y V +GA A + + +++D++MP MDGIEL
Sbjct: 1169 ILVVEDNADMRGYIRSILRDK-YNVFEAAHGAEALNILNSHSVDFIISDLMMPVMDGIEL 1227
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR E + + +T + +S + L KPF L+ + +L +
Sbjct: 1228 SRRVKENFAISHIPFLMLTAKTSQESRLESYRIGVDEYLLKPFDETLLLTRIENILENR 1286
>gi|209965047|ref|YP_002297962.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
SW]
gi|209958513|gb|ACI99149.1| cell cycle transcriptional regulator CtrA [Rhodospirillum centenum
SW]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD M + + L GY V S G + + + +++ D+++P++DG E
Sbjct: 2 RVLLVEDDPSMAKSIELMLNSEGYIVDSTELGEDGLEIGKLYDYDIIILDLMLPDIDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++G + + L+KPF R+LV + ++
Sbjct: 62 VLRRLRSARVTTPILILSGLSELDHKIKGLGVGADDYLTKPFDKRELVARLQAIVRR 118
>gi|254413389|ref|ZP_05027160.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196180009|gb|EDX75002.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 403
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D L L ++G+++ +G SA + L++ D++MP +DG E
Sbjct: 10 KLLIVDDQPHNLGILFDFLTRSGFKIFVALDGESALQRTEVTEPDLIILDVMMPGIDGFE 69
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + D+ ++F+T + ++KP H ++++ + + +
Sbjct: 70 TCKRLKQNPSTQDIPIIFMTALSDTVDKVQGFKLGAVDYITKPIHQEEVLSRIQTHIKLY 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|168187464|ref|ZP_02622099.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
gi|169294662|gb|EDS76795.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED+ + +F+ L K +EV+ +G KV E +++ DI++P +DG
Sbjct: 4 KYKVLVIEDEQSISKFIKLVLQKQNFEVIQAFSGEDGLKKVTTENPVVVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + + ++ +T + KPF+ +L + L+
Sbjct: 64 FKVCEILRKNYSSIGIIMLTALGQDVDKIKGLENGADDYMIKPFNPLELAARITSLIRRM 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|157692516|ref|YP_001486978.1| response regulator [Bacillus pumilus SAFR-032]
gi|157681274|gb|ABV62418.1| response regulator [Bacillus pumilus SAFR-032]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 20/126 (15%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M + K+L+ +D+ ++ + L + G V++ + + +E L++ DI++
Sbjct: 1 MPKLQNKVLIIDDEKEILELIHTVLTREGIDRVITASTARDGLSQFHQEQPDLVILDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ + A ++KPF +++ V
Sbjct: 61 PDGEGYDICKQIRDV-SHVPIIFLSAKGEESDKIVGLAIGGDDYITKPFSPKEVAYRVKA 119
Query: 117 LLTIKN 122
L +
Sbjct: 120 QLRRSS 125
>gi|153955619|ref|YP_001396384.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|146348477|gb|EDK35013.1| Predicted transcriptional regulator [Clostridium kluyveri DSM 555]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M + + L + Y V NG S D + +++ DI++P+MDGI
Sbjct: 2 RILMVEDEKYMAEAVAQILKRNHYSVDLEYNGESGLDCGLSGIYDIIILDIMLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + V+ +T L+KPF +L+ + L K+
Sbjct: 62 LLKELRRNGIETPVILLTAKGETEDKVRGLDSGADDYLAKPFEAEELLARLRALGRRKS 120
>gi|119488955|ref|ZP_01621890.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
gi|119454911|gb|EAW36054.1| Two component Transcriptional regulator, Winged helix family
protein [Lyngbya sp. PCC 8106]
Length = 262
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGYEV +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIAELVAINLEMAGYEVSQAEDGIKGQALALQLLPDLIILDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ ++ +T + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDERTSDIPIVMLTALGQTQNKVEGFNSGADDYLTKPFELEEMLARVRALLRR 121
>gi|220929522|ref|YP_002506431.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999850|gb|ACL76451.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 238
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+++ I + ED+ +++ + L G++V +NG + + L + DI++P +
Sbjct: 1 MSKQLIFVVEDEMHIQQLIKYNLEANGFKVNVFDNGEDLLEYSSGKVPDLFILDIMLPGI 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R + + + ++ +T + ++KPF +R+L+ V L
Sbjct: 61 DGLEVCRNLKQNNNTKTIPIIMLTAKSEEFDKVLGLELGADDYITKPFSVRELIARVKAL 120
Query: 118 LTIKN 122
N
Sbjct: 121 FRRVN 125
>gi|78358754|ref|YP_390203.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221159|gb|ABB40508.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 653
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL +D++ +R L +L AGY V G A + ++LTDI MP +
Sbjct: 1 MSHSILLVDDEEGIRTVLGLSLADAGYNVSVAATGEEALRLFDQSRPDIILTDIKMPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
G++L +R + PD++V+ ITG + L S ++KP + L +NR
Sbjct: 61 GLDLLKRVKNIAPDVEVIMITGHGDMQLAIQSLKQDATDFITKPINDDVLEIALNRAHER 120
Query: 118 LTIKN 122
++++N
Sbjct: 121 ISMRN 125
>gi|53723015|ref|YP_112000.1| metal-related two-component system, response regulator
[Burkholderia pseudomallei K96243]
gi|76819077|ref|YP_336261.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
1710b]
gi|126444564|ref|YP_001063861.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
668]
gi|126458151|ref|YP_001076746.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1106a]
gi|134278523|ref|ZP_01765237.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 305]
gi|167724960|ref|ZP_02408196.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei DM98]
gi|167743904|ref|ZP_02416678.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 14]
gi|167821087|ref|ZP_02452767.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 91]
gi|167829447|ref|ZP_02460918.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 9]
gi|167850926|ref|ZP_02476434.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei B7210]
gi|167899528|ref|ZP_02486929.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 7894]
gi|167907844|ref|ZP_02495049.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei NCTC 13177]
gi|167916204|ref|ZP_02503295.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 112]
gi|167924039|ref|ZP_02511130.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei BCC215]
gi|217422676|ref|ZP_03454179.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 576]
gi|226197040|ref|ZP_03792618.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei Pakistan 9]
gi|237510348|ref|ZP_04523063.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
MSHR346]
gi|242313953|ref|ZP_04812970.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1106b]
gi|254184632|ref|ZP_04891221.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1655]
gi|254185852|ref|ZP_04892370.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei Pasteur 52237]
gi|254193683|ref|ZP_04900115.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei S13]
gi|254265562|ref|ZP_04956427.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1710a]
gi|254300907|ref|ZP_04968351.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 406e]
gi|52213429|emb|CAH39472.1| metal-related two-component system, response regulator
[Burkholderia pseudomallei K96243]
gi|76583550|gb|ABA53024.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
1710b]
gi|126224055|gb|ABN87560.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
668]
gi|126231919|gb|ABN95332.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1106a]
gi|134250307|gb|EBA50387.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 305]
gi|157811175|gb|EDO88345.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 406e]
gi|157933538|gb|EDO89208.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei Pasteur 52237]
gi|169650434|gb|EDS83127.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei S13]
gi|184215224|gb|EDU12205.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1655]
gi|217394907|gb|EEC34926.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 576]
gi|225931023|gb|EEH27032.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei Pakistan 9]
gi|235002553|gb|EEP51977.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
MSHR346]
gi|242137192|gb|EES23595.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1106b]
gi|254216564|gb|EET05949.1| DNA-binding heavy metal response regulator [Burkholderia
pseudomallei 1710a]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L + L +AG+ +G S +++ E + L + D+++P DG
Sbjct: 2 KVLIVEDEPKTGMYLKRGLTEAGFVCDWTQDGISGLHQLQTENYDLAILDVMLPGCDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V L+KPF +L+ V LL
Sbjct: 62 VVRELRRTHR-TPVLFLTARDHVDDRVKGLELGGDDYLAKPFDFAELLARVRSLLRR 117
>gi|296187341|ref|ZP_06855736.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|296047863|gb|EFG87302.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++ + F+ L G+ + + +G A +E S+++ DI++P ++G E
Sbjct: 10 HILVVDDEESIVEFIKMGLEDEGFILHTAFDGYEAISLAKELNPSIIILDIMLPGINGYE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + ++ +T + + KPF ++L+ +N L
Sbjct: 70 VCSEIKK-WVNASIIMLTAKDDIDDRVKGLDLGADDYMIKPFSFKELLARINARLR 124
>gi|184155774|ref|YP_001844114.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
gi|227515634|ref|ZP_03945683.1| response regulator [Lactobacillus fermentum ATCC 14931]
gi|260663510|ref|ZP_05864400.1| two-component system response regulator [Lactobacillus fermentum
28-3-CHN]
gi|183227118|dbj|BAG27634.1| two-component response regulator [Lactobacillus fermentum IFO 3956]
gi|227086064|gb|EEI21376.1| response regulator [Lactobacillus fermentum ATCC 14931]
gi|260552051|gb|EEX25104.1| two-component system response regulator [Lactobacillus fermentum
28-3-CHN]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ RF+ L GYE +G D + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLARFVELELKHDGYETDVELDGRQGLDAALNQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E+ D ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GLEVARRVREV-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|167761405|ref|ZP_02433532.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
gi|167661071|gb|EDS05201.1| hypothetical protein CLOSCI_03815 [Clostridium scindens ATCC 35704]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + + K L GYEV +C +G +A+D + E + L++ D+ +P MDG++
Sbjct: 2 RILVVEDEKTLCKTIAKGLRLDGYEVDTCFDGETAWDIILSESYDLIILDLNLPGMDGMK 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ D + ++ ++ + D L KPFH +L V L
Sbjct: 62 VLQKIRMEDTETNILILSARGQLQDKIDGLDGGANDYLCKPFHFEELEARVRSLTRR 118
>gi|194467366|ref|ZP_03073353.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|194454402|gb|EDX43299.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I+L ED++ + FLI L GYEV+ +G A + +E+ +L+L D ++P DG+ +
Sbjct: 6 IMLVEDEESLASFLITELELEGYEVIWAKDGREALEIFKEKDITLILLDWMLPIYDGLTV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + ++ ++ IT + + + ++KPF + +L+ + +L
Sbjct: 66 LRRIRQ-SSNVPIIMITARSQTSDISMALDQGLDDYITKPFEIEELLARIRVVLRR 120
>gi|90021941|ref|YP_527768.1| response regulator receiver domain-containing protein
[Saccharophagus degradans 2-40]
gi|89951541|gb|ABD81556.1| response regulator receiver [Saccharophagus degradans 2-40]
Length = 222
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ D+ ++ L G++ + G A+ +++ + ++ DI+MP +DGI L
Sbjct: 4 ILLVEDNRDLAATVLDYLELQGFDCDYAHRGDHAFQLLQDNTYDAMVLDIMMPGLDGITL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T + L KPF L +L + L K+
Sbjct: 64 CEKIRAQGNNAPIIMLTARDTLEDKLSGFEAGADDYLVKPFDLPELAARLKALSKRKS 121
>gi|77919939|ref|YP_357754.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77546022|gb|ABA89584.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter carbinolicus DSM 2380]
Length = 455
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R L L G+ +S G A + E L+L DI +P MDG+
Sbjct: 2 KTILIVDDEQSIRESLDGILQDEGFRTLSAETGEDALTLLCGENPDLILLDIWLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E RR + DP+ V+ ++G + + + KP L ++ + L +
Sbjct: 62 ETLRRIRDNDPEQIVIMMSGHGTIETAVKATKLGAYDFIEKPLSLEKVLISIENALKV 119
>gi|296332216|ref|ZP_06874679.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|296150708|gb|EFG91594.1| two-component response regulator (YcbM) [Bacillus subtilis subsp.
spizizenii ATCC 6633]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+ILL EDD + + L K G+E+V +G +++ + L+L DI++P+++G+
Sbjct: 2 QRILLVEDDHSISEMVDHYLTKEGFEMVHAFDGEEGIRLFKQDSYDLILLDIMLPKLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ I+ ++KPF + +L V +
Sbjct: 62 DFLKIIREK-SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 118
>gi|256158647|ref|ZP_05456530.1| Transcriptional regulatory protein [Brucella ceti M490/95/1]
gi|256254051|ref|ZP_05459587.1| Transcriptional regulatory protein [Brucella ceti B1/94]
gi|261221191|ref|ZP_05935472.1| two component transcriptional regulator [Brucella ceti B1/94]
gi|265997152|ref|ZP_06109709.1| two component transcriptional regulator [Brucella ceti M490/95/1]
gi|260919775|gb|EEX86428.1| two component transcriptional regulator [Brucella ceti B1/94]
gi|262551620|gb|EEZ07610.1| two component transcriptional regulator [Brucella ceti M490/95/1]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 ISGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|153808459|ref|ZP_01961127.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
gi|149128781|gb|EDM19998.1| hypothetical protein BACCAC_02753 [Bacteroides caccae ATCC 43185]
Length = 1339
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+D++R +L++ L + Y V +C+NG A + E L+++DI+MPEM G
Sbjct: 1075 RRILIVEDNDELRNYLLQTLSEE-YTVQTCSNGKEALTIIPEYKPELVISDIMMPEMRGD 1133
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + + V+ +T + + KPF++ L V+ LLT
Sbjct: 1134 ELCKELKNNIETSHIPVILLTALNNEKDILSGLKIGADEYILKPFNIGILKATVDNLLTN 1193
Query: 121 K 121
+
Sbjct: 1194 R 1194
>gi|114326850|ref|YP_744007.1| two-component response regulator kdpE [Granulibacter bethesdensis
CGDNIH1]
gi|114315024|gb|ABI61084.1| two-component response regulator kdpE [Granulibacter bethesdensis
CGDNIH1]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ +RR L LG + + +GA A + E+ L+L D+ +P+MDG+E+
Sbjct: 6 VLIVDDEPAIRRLLRTTLGTQSWRITEAASGAGAMQALAEQKPDLVLLDLGLPDMDGLEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + P L V+ ++ + ++KPF + +LV + L
Sbjct: 66 LQHIRKTAPTLPVVILSARDNERGKVAAFEMGADDYVTKPFGMAELVARLRTALR 120
>gi|160878354|ref|YP_001557322.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160427020|gb|ABX40583.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ + + L GY V +C +G AY+ + E + L++ D+ +P MDGI+
Sbjct: 2 RILIVEDEIDLCDTIAEGLQIDGYAVDTCYHGDVAYELISTETYDLVVLDLNLPGMDGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+K++ ++ ++V+ L+KPF +L + LL
Sbjct: 62 ILSDLRKTNKDMKILILSARSSVSDKVLGLDIGANDYLAKPFAFEELEARIRSLLRR 118
>gi|116334617|ref|YP_796144.1| DNA-binding response regulator [Lactobacillus brevis ATCC 367]
gi|116099964|gb|ABJ65113.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus brevis ATCC 367]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE ++ NG A K+ P +L++ DI+MPEM GI
Sbjct: 2 KILVVDDDKEIAQLLEIYIKNEGYEPITAYNGKEALTKLHTTPDIALMILDIMMPEMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ ++KPF+ +++ V LL
Sbjct: 62 EVVKEVRK-DSQIPILILSAKTGDMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|300773206|ref|ZP_07083075.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300759377|gb|EFK56204.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLAED+ M + + +AL G+ V +G A+ R + + + D++MP DG
Sbjct: 5 HILLAEDEVLMGKIIKEALESRGFTVTWVTDGLKAFSSFRAQRPDICIFDVMMPVQDGFT 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ ++D D+ ++F+T ++ A + L KPF + +L+ + +
Sbjct: 65 LAKEIRKIDNDIPILFLTAKSSTADIVEGFELGANDYLKKPFSMEELIVRIKSQVKR 121
>gi|260587759|ref|ZP_05853672.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
gi|260542024|gb|EEX22593.1| DNA-binding response regulator DltR [Blautia hansenii DSM 20583]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L + Y V + +G +A + + + + ++ DI+MP++DGI
Sbjct: 2 RLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T + V + L+KPFH ++L+ + + ++
Sbjct: 62 VLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQ 119
>gi|254513054|ref|ZP_05125120.1| DNA-binding response regulator PetR [Rhodobacteraceae bacterium
KLH11]
gi|221533053|gb|EEE36048.1| DNA-binding response regulator PetR [Rhodobacteraceae bacterium
KLH11]
Length = 233
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ +DD+ +R L K L ++G+ V S + A A + F L++ D++MP D
Sbjct: 4 MDAHLLIVDDDERIRDLLKKFLMRSGFLVSSARDAAHARRVLSGLDFDLIVLDVMMPGED 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R E + ++ +T L+KPF ++L+ +N +L
Sbjct: 64 GVSLTRALRETH-ETPILLLTAKGETEHRIAGLEAGADDYLAKPFEPKELLLRINAILRR 122
>gi|198274494|ref|ZP_03207026.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
gi|198272696|gb|EDY96965.1| hypothetical protein BACPLE_00642 [Bacteroides plebeius DSM 17135]
Length = 1398
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR ++ L + Y V+ + G A + +++D++MP MDG+EL
Sbjct: 1149 ILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALALLHANNVDFIISDLMMPVMDGMEL 1207
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+RR + + +T + +S L KPF L+ ++ +L +
Sbjct: 1208 SRRVKNDFSISHIPFLMLTAKTSDEARLESYKMGADAFLLKPFDENMLLARISNILENR 1266
>gi|160914841|ref|ZP_02077055.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
gi|158433381|gb|EDP11670.1| hypothetical protein EUBDOL_00849 [Eubacterium dolichum DSM 3991]
Length = 246
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q KIL+ EDD +R + AL Y+ NG +A + + ++L D+ +P+
Sbjct: 1 MSQNIKILIVEDDGPIRNLIATALQTNAYKYDLAANGKTALLALSTHHYDIVLLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ + ++ I+ + L+KPF + +L+ V L
Sbjct: 61 KDGIEIIDQLR-TFSTTPIIVISARTNDEDKIAALDAGADDYLTKPFSVEELLARVRSTL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|152996350|ref|YP_001341185.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150837274|gb|ABR71250.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L+ AL + GY V ++G A + + E F L++ D+ +P +DG+
Sbjct: 8 RILVVEDDLSLADGLVTALKREGYTVDLLHDGIHALEALANEVFDLVVLDLGLPRLDGLA 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+ +T A+ L KPF + +L LL
Sbjct: 68 VLKQLRANENAVPVLILTARDALEDRVAGLDLGADDYLVKPFDVTELKARARALLRR 124
>gi|87312161|ref|ZP_01094265.1| two-component response regulator [Blastopirellula marina DSM 3645]
gi|87285135|gb|EAQ77065.1| two-component response regulator [Blastopirellula marina DSM 3645]
Length = 269
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
+IL+ ED+ + + L G++V +G SA + V + P +++ D+++P M G
Sbjct: 13 RILVVEDEAHLAIGIRYNLEAEGFDVTVVEDGRSALEVVDKNPRQIDIVILDLMLPGMSG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D+ ++ ++ + + KPF L + ++ V LL +
Sbjct: 73 YAVCETLRANGEDMPILILSARTLPEDRKRGFDVGADQYMMKPFDLDEFISRVKNLLAAR 132
Query: 122 N 122
N
Sbjct: 133 N 133
>gi|323136078|ref|ZP_08071161.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
gi|322399169|gb|EFY01688.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD ++ + AL GY V + +GA A D +R P L + DI MP MDG+E
Sbjct: 3 TIALVDDDRNILTSVSIALEGEGYRVQTYTDGAQALDGLRANPPDLAIFDIKMPRMDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L RR + D+ V+F+T + KPF R LV V +L N
Sbjct: 63 LLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRAN 120
>gi|315652558|ref|ZP_07905539.1| response regulator [Eubacterium saburreum DSM 3986]
gi|315485187|gb|EFU75588.1| response regulator [Eubacterium saburreum DSM 3986]
Length = 250
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L G+EV++ +G A + + LL+ DI+MP +DGI
Sbjct: 24 ILVCDDDREIVDAIKIYLSGEGFEVIAAYDGEEAIKLMAKHKVDLLIIDIMMPVLDGIRA 83
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + A L+KPF+ +LV V L
Sbjct: 84 TMQIRE-NSTIPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 138
>gi|311068829|ref|YP_003973752.1| two-component response regulator [Bacillus atrophaeus 1942]
gi|310869346|gb|ADP32821.1| two-component response regulator [Bacillus atrophaeus 1942]
Length = 240
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +RR L L + YE+ NG A K E + L+L D++MP DGIE
Sbjct: 8 KILVVDDEARIRRLLKMYLEREEYEIEEAENGDEAIVKGLETDYDLILLDLMMPGTDGIE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E ++ +T A + KPF R++V V LL
Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRR 123
>gi|295677563|ref|YP_003606087.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295437406|gb|ADG16576.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 220
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A +P+ L L D+ +P+ DG+E
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALHAAAAQPYDLALLDLGLPKRDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRALRARGNALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|302535152|ref|ZP_07287494.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
gi|302444047|gb|EFL15863.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. C]
Length = 237
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G S + R + L D+++P M
Sbjct: 1 MAETHVLFVEDDDVIREATTLALERDGFVVTAMPDGLSGLESFRANRPDIALLDVMVPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254773908|ref|ZP_05215424.1| two component response transcriptional regulatory protein prra
[Mycobacterium avium subsp. avium ATCC 25291]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ +DD D+ L + L +G+EV + +GA A E ++ DI MP +DG+ +
Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+D D+ V ++ ++V L KPF L +LV V LL +
Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 116
>gi|254292390|ref|YP_003058413.1| transcriptional regulator [Hirschia baltica ATCC 49814]
gi|254040921|gb|ACT57716.1| two component transcriptional regulator, winged helix family
[Hirschia baltica ATCC 49814]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ + IL+ +DD+D+R L + + G+ ++ +N + E L++ D+ MP
Sbjct: 1 MSQIKTILIVDDDNDLREALAEQFERHEGFSIIQAHNATEGMNLAEAEKPDLVILDVEMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+MDG + + + + V+ +TG + + ++KPF L+ V
Sbjct: 61 DMDGRDACKLMRKHGLRVPVIMLTGQDSDSDMVLGLDSGANDYVAKPFKFTVLLARVRAH 120
Query: 118 LT 119
L
Sbjct: 121 LR 122
>gi|240173513|ref|ZP_04752171.1| two-component sensory transduction protein RegX3 [Mycobacterium
kansasii ATCC 12478]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRSGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|229184109|ref|ZP_04311320.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
gi|228599398|gb|EEK57007.1| Two-component response regulator vanR [Bacillus cereus BGSC 6E1]
Length = 242
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ RF+ L + G++V+S +NG A + L + DI+MP MD IEL
Sbjct: 16 ILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDEIEL 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E L +MF++ ++ + + KPF + + V L
Sbjct: 76 CRRIREKHS-LPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRR 130
>gi|242281135|ref|YP_002993264.1| Fis family transcriptional regulator [Desulfovibrio salexigens DSM
2638]
gi|242124029|gb|ACS81725.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio salexigens DSM 2638]
Length = 463
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+D +R L L G++V +G A + + E+ L+ DI +P MD
Sbjct: 1 MSKNILIVDDEDGIRYSLRGILEDEGFDVSEAESGEKALEHLNEDQPDLVFLDIWLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ R + L V+ I+G + + + KP L +V + +
Sbjct: 61 GLEVLDRIKKEWDWLPVVMISGHGNIETAVSAIKKGAFDFIEKPLSLEKVVITAEKAVE 119
>gi|325660821|ref|ZP_08149449.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472895|gb|EGC76105.1| hypothetical protein HMPREF0490_00181 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 233
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L GY + NG +A + ++L D+ +P+M
Sbjct: 1 MNKLLILVVEDDTSVRNLITTTLKAHGYRYQTAANGQTAILEASSYNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ R+ ++ ++ I+ + + L+KPF + +L+ +
Sbjct: 61 DGVEIIRKIRS-WSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLR 115
>gi|310658178|ref|YP_003935899.1| DNA-binding response regulator in two-component regulatory system
with baes [Clostridium sticklandii DSM 519]
gi|308824956|emb|CBH20994.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Clostridium sticklandii]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I + +D+ +R + L K GY + + +RE LL+ DI+M +DG+
Sbjct: 2 KHIFIVDDEKRIRDLIEMYLKKEGYNTTTFESADGVLSAIREFMPDLLVLDIMMQGLDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + ++ ++ ++F++ + L+KPF R+LV + +L
Sbjct: 62 DLCKEIRKI-SEVPIIFVSARSDELDRILGLELGADDYLAKPFSPRELVVRIKTILKR 118
>gi|302528568|ref|ZP_07280910.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302437463|gb|EFL09279.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 244
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 46/116 (39%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L + G+ V +GA A +R ++ DI + MDGIE+
Sbjct: 27 VLVVEDETAIAELAALYLRRDGFGVEVEPDGAKALAAIRRLRPVAVVLDIGLSGMDGIEI 86
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R V+F+T L+KPF R+L V +L
Sbjct: 87 CRALRAAGDWTPVLFVTARDDELDRLLGLEIGADDYLTKPFSPRELAARVRTVLRR 142
>gi|297571966|ref|YP_003697740.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
gi|296932313|gb|ADH93121.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L GY+V C NG++ R E L+L D+++P +DG+
Sbjct: 2 RILVVDDDPGISEMVAILLESEGYDVSVCANGSNVVPLFRAEHPDLVLLDVMLPGLDGVS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E D+ ++ ++ ++KPF L+ V L +
Sbjct: 62 VCRLLREE-SDVPIIMMSAKTDSLDVIAGLEAGADDYVTKPFENSVLLARVKVRLRRQ 118
>gi|239825816|ref|YP_002948440.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
gi|239806109|gb|ACS23174.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. WCH70]
Length = 233
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+K IL+ +D++D+ + + L Y V + ++G+ A ++ F L++ DI+M +
Sbjct: 1 MNKKKILVVDDNEDICLTIKQYLELYHYFVEAVHSGSEALLRIINNNFDLIILDIMMEGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+EL + D ++F++ + + +SKPF L++L ++ L
Sbjct: 61 DGMELCSMIRDR-VDCPIIFVSAKTLEEDKIQALSVGGDDYISKPFSLKELKARIDCHLR 119
Query: 120 IK 121
+
Sbjct: 120 RE 121
>gi|170077233|ref|YP_001733871.1| regulatory component [Synechococcus sp. PCC 7002]
gi|169884902|gb|ACA98615.1| regulatory component [Synechococcus sp. PCC 7002]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 5/126 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGK-AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+++ ILL +D+ +R + L V + N A+D ++ L+++DI+MP
Sbjct: 1 MDKRYNILLVDDEPGVREAVQAYLEDDEALTVTTAENATKAWDVLQTFTPDLVISDIMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++DG + + E L V+F+T L KPF +L V
Sbjct: 61 QVDGYQFLGQLREDPRFKTLPVIFLTARGMTGDRIQGYQAGCDAYLPKPFEPEELEAIVK 120
Query: 116 RLLTIK 121
LLT +
Sbjct: 121 NLLTRE 126
>gi|170757144|ref|YP_001781246.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169122356|gb|ACA46192.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + ++ L++ DI+MP+MDGI+
Sbjct: 5 KVLIVDDEDEIRDAIEIYLRNEGITVFKAKDGIDALMLLEDQDIHLIIMDIMMPKMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|166710603|ref|ZP_02241810.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 259
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 87
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 88 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 143
>gi|332185405|ref|ZP_08387153.1| response regulator [Sphingomonas sp. S17]
gi|332014383|gb|EGI56440.1| response regulator [Sphingomonas sp. S17]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ + L L AGY + +G + E + ++ D+ +PE+DG+
Sbjct: 2 RVLIVEDEPNLGQQLKATLEGAGYAIDLATDGEEGHFLGSTESYDAIVLDLGLPEIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + + ++KPF +L+ + L+
Sbjct: 62 VLDRWRKEGKTTPVLVLTARDSWSDKVAGLDAGADDYVAKPFQTEELIARLRALIRR 118
>gi|319781901|ref|YP_004141377.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167789|gb|ADV11327.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 239
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD +R L + L + G+ V N A K+ F LL+ D++MP G++L
Sbjct: 21 LVVDDDTRIRNLLKQYLTENGFRVTVAGNAGEARRKLAGLDFDLLVLDVMMPGETGVDLT 80
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T + L KPF R+L+ +N +L
Sbjct: 81 KSLRAE-KNVPILMLTALSETDSRISGLEAGADDYLPKPFDPRELILRINNILRR 134
>gi|320008595|gb|ADW03445.1| two component transcriptional regulator, winged helix family
[Streptomyces flavogriseus ATCC 33331]
Length = 245
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ DI++P DG+
Sbjct: 19 RRVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|254476369|ref|ZP_05089755.1| response regulator receiver modulated serine phosphatase [Ruegeria
sp. R11]
gi|214030612|gb|EEB71447.1| response regulator receiver modulated serine phosphatase [Ruegeria
sp. R11]
Length = 423
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 59/124 (47%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+
Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICLADPPDLILSDWMMPGMNGL 78
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRL 117
E R E D + +T + + L+KP +L + R+
Sbjct: 79 EFCRAFREQSKDNYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138
Query: 118 LTIK 121
L ++
Sbjct: 139 LRMQ 142
>gi|70730075|ref|YP_259814.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68344374|gb|AAY91980.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 238
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R L L + GY+V A + + LL+ DI +P D
Sbjct: 1 MTPRVLIVDDDPLIRELLQAYLSQEGYDVHCAATAEQAESFLGQHTVDLLMLDIRLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ ITG + KP + R+LV+ L+
Sbjct: 61 GLTLTRELR-VRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRR 119
>gi|15893613|ref|NP_346962.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15023165|gb|AAK78302.1|AE007546_8 Response regulator (CheY-like domain, HTH domain) [Clostridium
acetobutylicum ATCC 824]
gi|325507735|gb|ADZ19371.1| Response regulator (CheY-like domain, HTH domain) [Clostridium
acetobutylicum EA 2018]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + L + ++V +G + + +E+ + L++ D+++PE+DG
Sbjct: 2 KKILIIEDETSIAELEKDYLELSNFKVDIEVSGKTGLEAAKEKNYELIILDLMLPEIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ ++ + ++ ++ ++KPF +LV V ++
Sbjct: 62 EICKQIRKI-KNTPILMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHISR 118
>gi|88808835|ref|ZP_01124344.1| two-component response regulator [Synechococcus sp. WH 7805]
gi|88786777|gb|EAR17935.1| two-component response regulator [Synechococcus sp. WH 7805]
Length = 244
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD ++R+ + L GY+V S ++ ++ + L++ D++MP DG+
Sbjct: 10 IWVVDDDPELRQMVGTYLIDQGYDVRSLSDVKQLEARLEFQRPDLVVLDLMMPGDDGLTA 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + DL V+ +T L+KPF R+L + +L ++
Sbjct: 70 LRRLRDAGDDLPVVMLTARGEGVDRIIGLEQGADDYLAKPFLPRELSARIEAVLRRRS 127
>gi|254821074|ref|ZP_05226075.1| DNA-binding response regulator [Mycobacterium intracellulare ATCC
13950]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G++A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|302875761|ref|YP_003844394.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
gi|307689195|ref|ZP_07631641.1| two component transcriptional regulator, winged helix family
protein [Clostridium cellulovorans 743B]
gi|302578618|gb|ADL52630.1| two component transcriptional regulator, winged helix family
[Clostridium cellulovorans 743B]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD D+R L K GY+ +S +G A + + +E L+++DI+MP MDG EL
Sbjct: 4 VLVVEDDKDLRGLFCTILTKNGYKAISAEDGEKALEILEKEYVDLVISDIMMPNMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + +L ++ IT A + KP + ++V V LL
Sbjct: 64 TKALREANFNLPILMITAKETFADKQKGFLVGTDDYMVKPVDVNEMVLRVGALLRR 119
>gi|237799880|ref|ZP_04588341.1| sensory box protein/response regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331022735|gb|EGI02792.1| sensory box protein/response regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 464
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L L YE ++ +G A + E L+L DI+MP MDG E
Sbjct: 7 TILIVDDDVHVRDLLEVLLRNQHYETLTAESGEQALAMIDERAPDLILLDIMMPGMDGYE 66
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+A + ++ ++ ++ + + L+KP +L V LL +K
Sbjct: 67 VASQLKARKGTANIPIIMLSALDEQSARLSGLEAGAEEYLNKPVESAELWLRVRNLLRLK 126
>gi|268317057|ref|YP_003290776.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
gi|262334591|gb|ACY48388.1| response regulator receiver protein [Rhodothermus marinus DSM 4252]
Length = 132
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + L + + GY+V +G +A + R P L+L D+++P M G E
Sbjct: 7 RILIVEDEPSIALSLRFLMEQEGYQVHVVEDGEAALEACRNVPPDLVLLDVMLPGMSGFE 66
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ +KV+ +T A + KPF +R+++ V LL
Sbjct: 67 VCRQLKAGPDGQAIKVVLVTARGRETDLEKGRAVGADAYIVKPFAIREVMETVRTLLNR 125
>gi|255035713|ref|YP_003086334.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254948469|gb|ACT93169.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1278
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+D +R F+ + + Y ++ NG + +E+ ++L+D++MPE+ G
Sbjct: 1026 KNTILIIEDNDQLRVFIRELFEET-YNILEAGNGLRGVELAQEKIPDIILSDVMMPEISG 1084
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R + D + V+ +T + L KPF R L ++N LL
Sbjct: 1085 LEVCNRLKKSDTTSHIPVVLLTARTQSEQVIEGLTAGADDYLVKPFDPRILEIKINNLLR 1144
Query: 120 IK 121
++
Sbjct: 1145 VR 1146
>gi|254283288|ref|ZP_04958256.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium NOR51-B]
gi|219679491|gb|EED35840.1| phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium NOR51-B]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D+ +R L AL A ++ + +N + A+ V +E L+L D ++P G
Sbjct: 3 SGKILVVDDEYAIRDMLRMALEIADFDCIETDNISDAHSLVVDERPDLVLLDWMLPGGSG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL RR E + V+ +T +A L+KPF R+LV + LL
Sbjct: 63 IELLRRLKRSEATRAIPVIMLTAKSAEDNVIQGLEVGADDYLTKPFAPRELVARIKALLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|167630091|ref|YP_001680590.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
gi|167592831|gb|ABZ84579.1| signal transduction histidine kinase [Heliobacterium modesticaldum
Ice1]
Length = 567
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD R + L + GY + NG A + EE F L+L D MP M GIE
Sbjct: 444 HILLVDDDVFNRTIIGAWLRRWGYRLREATNGKEALAVLEEERFDLILMDEQMPGMSGIE 503
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
R ++ V+ +T A A LSKPF DL++ V
Sbjct: 504 TVDRIRADARWKNIPVIAVTANAMKGDRERFLAAGMNDYLSKPFSPADLLHVVR 557
>gi|153870385|ref|ZP_01999797.1| Response regulator receiver protein [Beggiatoa sp. PS]
gi|152073147|gb|EDN70201.1| Response regulator receiver protein [Beggiatoa sp. PS]
Length = 855
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +D+ L L Y + +G A + E L+L D++MP M G
Sbjct: 562 KILIVDDEAVNLHVLANHLSLNHYATIQAASGREALSILEEGLIPDLILLDVMMPHMTGY 621
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ E +L ++ +T V+ L KP +L+ + L I
Sbjct: 622 EVTQKIREHWEANELPIVLLTAKNQVSDLVMGLEVGANDYLIKPISKNELLARIKTHLHI 681
Query: 121 K 121
K
Sbjct: 682 K 682
>gi|114568628|ref|YP_755308.1| two component transcriptional regulator [Maricaulis maris MCS10]
gi|114339090|gb|ABI64370.1| two component transcriptional regulator, winged helix family
[Maricaulis maris MCS10]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD+++ + L GY V + N+GASA + E+P L + DI MP MDG+E
Sbjct: 3 TIALVDDDENIITSVSIFLEGEGYNVRTYNDGASALTALAEDPPDLGIFDIKMPRMDGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + +L V+F+T ++KPF R L V +L
Sbjct: 63 LLRRLRQ-SSNLPVIFLTSKDDEFDEALGLNLGADDYIAKPFSQRLLGERVKAVLRR 118
>gi|148657917|ref|YP_001278122.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148570027|gb|ABQ92172.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ILL EDD + L L + GY V++ +G ++ R + +++ D+++P +D
Sbjct: 3 MS-TILLVEDDPILSETLRYNLEREGYAVINAPDGVVGLERARRDQPDMVILDVMLPRLD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + ++ ++ +T ++KPF L +L+ V ++
Sbjct: 62 GFSVCRILRQE-SEVPILILTARQDEIDRIAGLELGADDYVAKPFSLGELLARVRAIMRR 120
Query: 121 KN 122
+
Sbjct: 121 SD 122
>gi|148243637|ref|YP_001219877.1| two component heavy metal response transcriptional regulator
[Acidiphilium cryptum JF-5]
gi|146400200|gb|ABQ28735.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidiphilium cryptum JF-5]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 47/117 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L K L + G+ +G + + R + ++ DI++P +G E
Sbjct: 2 RVLIVEDEAKTAAYLRKGLEENGFTADVATDGETGLEFARHGGYDAIILDIMLPRRNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ +T V L KPF +L+ V +L
Sbjct: 62 ILDEIRRRDSQTAVLLLTARDQVTDRVAGLEAGADDYLVKPFAFSELLARVRTILRR 118
>gi|303242269|ref|ZP_07328756.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302590179|gb|EFL59940.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED+ + L +GY+V G + +E F+L++ D+++P +D
Sbjct: 1 MKKRILIVEDEVTIAELQRDYLEISGYDVEIEKTGDKGLSRSLKEDFNLIILDLMLPNID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ E ++ ++ ++ ++KPF +LV V ++
Sbjct: 61 GFEICRKIRE-SKNIPILMVSARKEDIDKIRGLGLGADDYITKPFSPSELVARVTAHISR 119
>gi|291482632|dbj|BAI83707.1| hypothetical protein BSNT_00453 [Bacillus subtilis subsp. natto
BEST195]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+ILL EDD + + L K G+ +V +G ++ + L+L DI++P+++G+
Sbjct: 2 QRILLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ I+ ++KPF + +L V +
Sbjct: 62 DFLKIIREK-SNVPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 118
>gi|293395128|ref|ZP_06639414.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
gi|291422305|gb|EFE95548.1| DNA-binding response regulator [Serratia odorifera DSM 4582]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL AG+ V +G +A + E + L++ D+ +P ++G++
Sbjct: 2 RLLLVEDHPELSHWLQKALTGAGFAVDVAADGVAADHMLLNENYVLVVLDVALPRLNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ V+ +T VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQNMPVLLLTARTDVADRVKGLNLGADDYLTKPFELDELEARIRALLRR 118
>gi|284988739|ref|YP_003407293.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
obscurus DSM 43160]
gi|284061984|gb|ADB72922.1| multi-sensor signal transduction histidine kinase [Geodermatophilus
obscurus DSM 43160]
Length = 1711
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+A+D+ DMR +L++ LG Y+V + +G A D +P L+++D++MP +DG
Sbjct: 625 SGRVLVADDNADMRGYLLRLLGPH-YDVRAVADGRQALDAALADPPDLVVSDVMMPGLDG 683
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L + V+ ++ A + A L KPF ++L+ V L
Sbjct: 684 MGLLAALRAEPRTARVPVVLLSARAGEEAAVEGLAAGADDYLVKPFSAQELLARVRAHLE 743
Query: 120 I 120
+
Sbjct: 744 L 744
>gi|152965198|ref|YP_001360982.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
gi|151359715|gb|ABS02718.1| two component transcriptional regulator, winged helix family
[Kineococcus radiotolerans SRS30216]
Length = 254
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ ++ ED+ + + + L GY V + +G S + +++ D+++P DG
Sbjct: 17 SRTAVVVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDG 76
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR P + V+ +T ++KPF +R+LV VN L+
Sbjct: 77 LEVCRRVQAARP-VPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRR 134
>gi|126347735|emb|CAJ89452.1| putative two-component hybrid sensor and regulator [Streptomyces
ambofaciens ATCC 23877]
Length = 1368
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ DMR +L + L AGY+V + ++G +A + VR + L+++D++MP +DG+ L
Sbjct: 621 LVADDNADMREYLTRLLDGAGYQVDTVDDGLAALEAVRADAPDLVISDVMMPGLDGLGLV 680
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---LLTI 120
+ V+ ++ A + + L KPF +L+ V L +
Sbjct: 681 AALRTDPRTVSVPVVLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANVELARL 740
Query: 121 KN 122
+N
Sbjct: 741 RN 742
>gi|91778359|ref|YP_553567.1| hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
gi|296159926|ref|ZP_06842747.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia sp. Ch1-1]
gi|91691019|gb|ABE34217.1| Hypothetical protein Bxe_B1748a [Burkholderia xenovorans LB400]
gi|295889909|gb|EFG69706.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia sp. Ch1-1]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ EDD +L K L ++GY V G E + L++ D+++P +D
Sbjct: 1 MS--ILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGID 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R DL V+F+T V+ L KPF +LV + LL
Sbjct: 59 GWEIMRALRARR-DLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117
>gi|73537794|ref|YP_298161.1| heavy metal response regulator [Ralstonia eutropha JMP134]
gi|72121131|gb|AAZ63317.1| Heavy metal response regulator [Ralstonia eutropha JMP134]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L+K L ++G+ V +G RE+P+ L++ D+++P MDG
Sbjct: 2 RILIVEDEPKAGDYLLKGLTESGFVVDLARDGVDGLAHAREQPYDLIVLDVMLPGMDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+F+T + + KPF +LV + +L
Sbjct: 62 VLRELRRER-DTPVLFLTARDELQDRLKGLELGADDYMVKPFAFAELVMRIRTILRR 117
>gi|25010196|ref|NP_734591.1| DNA-binding response regulator [Streptococcus agalactiae NEM316]
gi|76786780|ref|YP_328847.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|77409199|ref|ZP_00785910.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|77414552|ref|ZP_00790696.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|23094547|emb|CAD45766.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561837|gb|ABA44421.1| DNA-binding response regulator [Streptococcus agalactiae A909]
gi|77159393|gb|EAO70560.1| DNA-binding response regulator [Streptococcus agalactiae 515]
gi|77172207|gb|EAO75365.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG +
Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ ++ +T + + + KP L++L + LL N
Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121
>gi|323972872|gb|EGB68071.1| heavy metal response regulator [Escherichia coli TA007]
Length = 290
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|317495884|ref|ZP_07954247.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
gi|316914061|gb|EFV35544.1| response regulator receiver domain-containing protein [Gemella
moribillum M424]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ D+ L L Y V + +NG A D + + + + D++MP+MDG+
Sbjct: 2 RLLLAEDERDLADALEAMLKHNNYSVDTVDNGQDALDYLMLDDYDGAILDVMMPKMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ E + V+ +T + V L+KPF +++L+ V + +
Sbjct: 62 VVKKLRENKKNTPVLLLTAKSEVEDKVYGLDSGADDYLTKPFVIKELLARVRSMTRRQ 119
>gi|255009245|ref|ZP_05281371.1| putative two component system response regulator [Bacteroides
fragilis 3_1_12]
gi|313146995|ref|ZP_07809188.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
gi|313135762|gb|EFR53122.1| two-component system response regulator [Bacteroides fragilis
3_1_12]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +KI LL ED+ + + L + + + NG + +L+ D++MP
Sbjct: 1 MKEKIKVLLVEDEITLAMIIKDTLEENDFTLTIAANGEEGLRMFFDIRPDVLVADVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
MDG E+ RR + D V+F+T +A+ + L KPF +++L+ + L
Sbjct: 61 MDGFEMVRRIRQTDKQTPVLFLTARSAINDVVEGFELGANDYLKKPFGMQELIIRIKAL 119
>gi|224584566|ref|YP_002638364.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|224469093|gb|ACN46923.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E + L + DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYVLAVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|160938781|ref|ZP_02086133.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
BAA-613]
gi|158438480|gb|EDP16239.1| hypothetical protein CLOBOL_03676 [Clostridium bolteae ATCC
BAA-613]
Length = 224
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AEDD + RR + L + GY + +G A + L++ DI+MP MDG E
Sbjct: 4 ILVAEDDKNTRRLMEAVLKEHGYHPILACDGLEALKLLDTHHVDLVILDIMMPGMDGYEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D L ++ +T ++KP +++ + LL
Sbjct: 64 TRQLRATDYTLPILMVTAKQLPEDKRKGFIVGTDDYMTKPVDEEEMILRIRALLRR 119
>gi|78186515|ref|YP_374558.1| two component transcriptional regulator [Chlorobium luteolum DSM
273]
gi|78166417|gb|ABB23515.1| two component transcriptional regulator, winged helix family
[Chlorobium luteolum DSM 273]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + + L KAGY+ NG A++++ F L+L DI++P +DG ++
Sbjct: 6 ILVVEDDRNLAKLVGYNLEKAGYKCQFSENGEDAFEQLSMRSFELILLDIMLPGIDGFDV 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ ++ D+ ++ +T + KPF R+L + +L
Sbjct: 66 CRKIRQHQIYKDIPIIMLTAKGEEIDKILGFELGIDDYVVKPFSPRELTLRIRAVLKR 123
>gi|21221787|ref|NP_627566.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|256787037|ref|ZP_05525468.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|289770930|ref|ZP_06530308.1| two-component system response regulator [Streptomyces lividans
TK24]
gi|81859427|sp|Q9ZEP4|CSEB_STRCO RecName: Full=Transcriptional regulatory protein CseB
gi|3980223|emb|CAA10325.1| response regulator [Streptomyces coelicolor A3(2)]
gi|4585590|emb|CAB40858.1| two-component system response regulator [Streptomyces coelicolor
A3(2)]
gi|289701129|gb|EFD68558.1| two-component system response regulator [Streptomyces lividans
TK24]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRADRPDIALLDVMLPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|17228133|ref|NP_484681.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17129983|dbj|BAB72595.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 438
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + + LG AG++V +G A +V L+L D++MP +DG E
Sbjct: 26 VLIVDDTPTNLEVVSETLGDAGFDVAIATSGDRALQQVERRLPDLILLDVMMPGIDGFET 85
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D + ++F+T + + KPF+ ++++ V+ L +
Sbjct: 86 CRRLKANDRTCHIPIIFMTALCDSESKVKALELGAVDYIVKPFYEKEVLARVSTHLQL 143
>gi|150391442|ref|YP_001321491.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149951304|gb|ABR49832.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L Y V +GA A + +E L+L D++MP +DG
Sbjct: 4 VLVVDDEREITDAIEVYLRNQNYNVFKAYDGAEALEIFEKEEIHLVLMDVMMPRLDGTSA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + ++KPF+ +L+ VN L
Sbjct: 64 TIKIRE-NSTVPIIILSAKSEDVDKIWGLNVGADDYITKPFNPMELLARVNSSLRR 118
>gi|307331601|ref|ZP_07610710.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306882728|gb|EFN13805.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 52/110 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD +R+ L +AL GY V + +G A + E +++ D++MP +D
Sbjct: 1 MTNTVLLAEDDRAIRQALERALTLEGYRVTAVPDGIEALAAIHRECPDVVVLDVMMPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
G+++ R ++ +T A + + KPF + ++
Sbjct: 61 GLQVCRVLRAEGDRTPILMLTARVETADRIEGLDAGADDYVVKPFEVEEV 110
>gi|307293657|ref|ZP_07573501.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
gi|306879808|gb|EFN11025.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ EDD D ++ K +G+AG+ V +NG + + +++ D +MP MD
Sbjct: 1 MSHKILVVEDDADTAAYVAKGMGEAGFTVDRADNGRDGLFLASDGSYGVIILDRMMPAMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + V+ ++ + L KPF +L+ V LL
Sbjct: 61 GMATLKALRAAGIETPVIILSALGTPEDRVEGLTSGADDYLVKPFAFAELLARVQLLLRR 120
>gi|254822956|ref|ZP_05227957.1| two component response transcriptional regulatory protein prra
[Mycobacterium intracellulare ATCC 13950]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ +DD D+ L + L +G+EV + +GA A E ++ DI MP +DG+ +
Sbjct: 1 MVVDDDSDVLASLERGLRLSGFEVSTAVDGAEALRSATETRPDAIVLDINMPVLDGVSVV 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+D D+ V ++ ++V L KPF L +LV V LL +
Sbjct: 61 TALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 116
>gi|238922420|ref|YP_002935934.1| two-component system, OmpR family, response regulator [Eubacterium
eligens ATCC 27750]
gi|238874092|gb|ACR73800.1| two-component system, OmpR family, response regulator [Eubacterium
eligens ATCC 27750]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|225377469|ref|ZP_03754690.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
16841]
gi|225210686|gb|EEG93040.1| hypothetical protein ROSEINA2194_03117 [Roseburia inulinivorans DSM
16841]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|154484836|ref|ZP_02027284.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
27560]
gi|149733789|gb|EDM49908.1| hypothetical protein EUBVEN_02554 [Eubacterium ventriosum ATCC
27560]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|332973098|gb|EGK11033.1| DNA-binding response regulator [Desmospora sp. 8437]
Length = 239
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
LL +D+ + L L K G+ E+++ G RE L+L D+++P+++G E+
Sbjct: 5 LLVDDEPSILEMLEVTLRKEGFREILTARTGEEGVRLAREGRPDLVLLDVMLPDLEGFEV 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++F+T + ++KPF+ ++V V L +
Sbjct: 65 CRRLRSFT-TVPILFLTARSNDLDKLMGLGIGGDDYITKPFNPLEVVARVKAQLRRQ 120
>gi|307564544|ref|ZP_07627085.1| response regulator receiver domain protein [Prevotella amnii CRIS
21A-A]
gi|307346904|gb|EFN92200.1| response regulator receiver domain protein [Prevotella amnii CRIS
21A-A]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED+ + L + + GYEV+ +G + F L+++DI++P++D
Sbjct: 1 MIPQILIVEDEQRVADLLKVGIEEHGYEVMVAYDGMMGLQLFNKYDFKLIISDIILPKLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + + + ++ +T + + KPF LR+LV + LL
Sbjct: 61 GFDLCKEIRTKNKHVPILMLTALGTTDDKLEGFDVGADDYMVKPFDLRELVARMKVLLKR 120
>gi|300853845|ref|YP_003778829.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300433960|gb|ADK13727.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ EDD+++ + L Y +V +G A +K + F L++ D+++P +
Sbjct: 1 MNISKILVIEDDEEINNLIYNTLKNENYNIVQAFDGKDALEKY-DNTFQLIILDLMLPYI 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ R+ E + + V+ ++ + + KPF R+L V L
Sbjct: 60 DGIEVLRKIRE-NSTVPVIILSAKNEETDRVIGLSMGADDYMIKPFSTRELAARVKAQLR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|289663273|ref|ZP_06484854.1| two-component system regulatory protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 1 MTGKKVLLVEDDADSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 61 SGIEVLSAIRRAG-DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|317051506|ref|YP_004112622.1| sigma-54 factor interaction domain-containing protein
[Desulfurispirillum indicum S5]
gi|316946590|gb|ADU66066.1| sigma-54 factor interaction domain-containing protein
[Desulfurispirillum indicum S5]
Length = 487
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 63/115 (54%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +L+ +D+D MR L + L +AGYEV++ +G + K++ ++TD+ MP MDG+
Sbjct: 6 KTVLVVDDEDQMRLALRETLTRAGYEVITAFDGNNGLSKLQNNSIDAVITDLRMPVMDGM 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E ++A + P L ++ +T +A V D+ + KPF + + + R+
Sbjct: 66 EFLQKALQEKPGLPIVLMTAYATVNTAVDAMKSGAFDYIMKPFSPEVIESTLERV 120
>gi|260584875|ref|ZP_05852620.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
gi|260157532|gb|EEW92603.1| DNA-binding response regulator [Granulicatella elegans ATCC 700633]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L +E+V +G A +K++ P +++ DI+MP +DGI
Sbjct: 2 KILVVDDDREIVELLSIYLRNEKFEIVKAYDGKQALEKIQAYPDIDMVILDIMMPRLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + L ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 SVVHEIRKTNDALPILLLSAKSTDIDKIQGLTNGADDYVTKPFNPLEVIARVKSLLRR 119
>gi|254694764|ref|ZP_05156592.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
abortus bv. 3 str. Tulya]
gi|261215091|ref|ZP_05929372.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|260916698|gb|EEX83559.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEDEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|225027390|ref|ZP_03716582.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
gi|224955287|gb|EEG36496.1| hypothetical protein EUBHAL_01646 [Eubacterium hallii DSM 3353]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|160890909|ref|ZP_02071912.1| hypothetical protein BACUNI_03354 [Bacteroides uniformis ATCC 8492]
gi|270295891|ref|ZP_06202091.1| transcriptional regulator [Bacteroides sp. D20]
gi|317479670|ref|ZP_07938794.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
gi|156859908|gb|EDO53339.1| hypothetical protein BACUNI_03354 [Bacteroides uniformis ATCC 8492]
gi|270273295|gb|EFA19157.1| transcriptional regulator [Bacteroides sp. D20]
gi|316904171|gb|EFV26001.1| response regulator receiver domain-containing protein [Bacteroides
sp. 4_1_36]
Length = 233
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYAAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|87121149|ref|ZP_01077040.1| Response regulator [Marinomonas sp. MED121]
gi|86163641|gb|EAQ64915.1| Response regulator [Marinomonas sp. MED121]
Length = 264
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMD 60
++ + + +DD ++R L L K + V + ++G S ++ L++ DI++P D
Sbjct: 4 SKTVFVVDDDAEIRNLLKTYLEKHQFNVRTADSGESFLADFEQDSAADLIILDIMLPGED 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + + V+ +T + L+KPF+ R+L+ + +
Sbjct: 64 GFSVCRSLR-MKSLVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARMKAIFRR 122
>gi|330829011|ref|YP_004391963.1| winged helix family two component transcriptional regulator
[Aeromonas veronii B565]
gi|328804147|gb|AEB49346.1| Two component transcriptional regulator, winged helix family
[Aeromonas veronii B565]
Length = 242
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ ++ L L + G + +G A + LLL D+ MP++DG ++
Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRSLHAADGREALAMHQAFKPDLLLLDVQMPQLDGWQV 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D V+ +T + KPF+ ++V V +L
Sbjct: 76 LSEIRARG-DTPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRR 130
>gi|329961691|ref|ZP_08299737.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
gi|328531563|gb|EGF58400.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides fluxus YIT 12057]
Length = 1338
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ ED+ +R L YEV++ +G V E +++++D+VMP+M G
Sbjct: 1079 DAKILIVEDNASIREMLANIFHPF-YEVLTAPDGEEGLALVHSEMPNIVVSDVVMPKMSG 1137
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL ++ + V+ +T A+ N + ++KPF+ L++ N L+
Sbjct: 1138 TELCKQIKSDFNTCHIPVVLLTARTAIEQNIEGLRIGADDYITKPFNTNLLISRCNNLVN 1197
Query: 120 IK 121
+
Sbjct: 1198 SR 1199
>gi|323359459|ref|YP_004225855.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323275830|dbj|BAJ75975.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 218
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+AED++ + F+ K L AGY+ V+ ++GA A D L+L D+ +P +D
Sbjct: 1 MT-RILIAEDEERIAAFVAKGLEAAGYQTVTVDDGADALDTALSGEVDLVLLDVGLPTID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ R L V+ +T + D ++KPF +L+ V L
Sbjct: 60 GFEVLRTLRGQGSALPVIMLTARTSTRDTVDGLDAGANDYMAKPFKFDELLARVRSRLR 118
>gi|237726037|ref|ZP_04556518.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D4]
gi|229435845|gb|EEO45922.1| two-component system sensor histidine kinase/response regulator
[Bacteroides dorei 5_1_36/D4]
Length = 1408
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|209883336|ref|YP_002287193.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
carboxidovorans OM5]
gi|209871532|gb|ACI91328.1| KDP operon transcriptional regulatory protein KdpE [Oligotropha
carboxidovorans OM5]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R+ L L GY +V NG A + EE L+L D+ +P++ G +
Sbjct: 7 KILVVDDEPPIRKLLRVGLTAEGYAMVEAVNGEEAAALITEEKPDLILLDLGLPDISGHD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R +L ++ ++ + L+KPF +R+L + L K
Sbjct: 67 LLERWRAELVELPIVVLSSRTDETGIVKALELGADDYLTKPFGMRELAARIRVALRHK 124
>gi|168704604|ref|ZP_02736881.1| phosphate regulon response regulator PhoB [Gemmata obscuriglobus
UQM 2246]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + L K GYEV +G K + ++L D+ +P M+G++
Sbjct: 5 RILIIEDERGLTQTLTWYFNKEGYEVTVSGDGLEGLRKAQTALPDVVLLDLNLPGMNGLD 64
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E D+ ++ IT + + KPF+ + L+++V LL
Sbjct: 65 VCRELRAGERTRDIPIIMITAKTDETDQVVGYSLGADDYVGKPFNNKILLHKVKALLRR 123
>gi|53803652|ref|YP_114696.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
gi|53757413|gb|AAU91704.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
Length = 238
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD + L + L GY V + ++G + + L L D+ +P ++
Sbjct: 1 MT-RLLLIDDDTALCELLSEYLALEGYAVEAVHDGEAGLAAALSGRYRLALLDVTLPRLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ +R + L V+ +T L KPF+ R+LV + +L
Sbjct: 60 GFEVLKRIRQE-SSLPVLMLTARGDDFDRVVGLEIGADDYLPKPFNHRELVARIKAILRR 118
>gi|330900238|gb|EGH31657.1| heavy metal response regulator [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 228
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T V L KPF +L+ V LL
Sbjct: 62 VIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|307129734|ref|YP_003881750.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
dadantii 3937]
gi|306527263|gb|ADM97193.1| Phosphate regulon transcriptional regulatory protein phoB [Dickeya
dadantii 3937]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++IL+ EDD D L L + ++V+ +G + D + L+L D+++P M
Sbjct: 1 MSPKRILIIEDDTDAAGVLEAYLKRDNFQVLLAGDGVNGLDMAQRLKPDLILLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ D+ V+ +T + ++KP+H ++V V +L
Sbjct: 61 NGTEVLTALRRK-SDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|304310368|ref|YP_003809966.1| putative response regulator receiver [gamma proteobacterium HdN1]
gi|301796101|emb|CBL44306.1| putative response regulator receiver [gamma proteobacterium HdN1]
Length = 1044
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++++L+ +D++ R+ L K GYE + NG A D V E+ + L+L D MP MDG
Sbjct: 918 SKRLLVVDDNEVNRKVACGFLRKLGYEADTAENGQEALDAVLEKDYGLILMDCQMPVMDG 977
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E R+ L L ++ +T A A +KP L +N L
Sbjct: 978 YEATRQIKALPKGKYLPIIAVTANAMEGDRDKCLAAGMDDYTTKPIRREKLQELLNHWL 1036
>gi|297621789|ref|YP_003709926.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila
WSU 86-1044]
gi|297377090|gb|ADI38920.1| sigma-54 dependent response regulator atoC [Waddlia chondrophila
WSU 86-1044]
Length = 461
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +KIL+ +D++ +R F+ + L + G+EV + NG + ++ + L+ TD+ MP++
Sbjct: 1 MSIEKILVIDDEEIIRTFIAETLSREGFEVSTAENGKKGIGQFKDCSYDLVFTDMKMPDL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ + E+ P V+ IT + ++ ++ L KPF + V +
Sbjct: 61 TGIEVLTKIKEVSPQTPVVVITAYGSIENAVEAMRYGAFNYLIKPFSPDTIEAVVEKA 118
>gi|270296301|ref|ZP_06202501.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|270273705|gb|EFA19567.1| conserved hypothetical protein [Bacteroides sp. D20]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R + +L K + V + + SA DK+ + + +L DI++P G++
Sbjct: 2 KILIVEDEQDLRETIRTSLLKEKFVVETAADYFSALDKINDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ D L+KPFHL +L V L+ +
Sbjct: 62 LLRELKRLHRSDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVKSLIRRR 119
>gi|260435890|ref|ZP_05789860.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. WH 8109]
gi|260413764|gb|EEX07060.1| two component transcriptional regulator, winged helix family
[Synechococcus sp. WH 8109]
Length = 262
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R D + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDDRTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|168185598|ref|ZP_02620233.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
gi|169296235|gb|EDS78368.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
Length = 234
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ EDD ++ + L + Y V + G + R++ + L++ DI++PE+D
Sbjct: 1 MNGKILVIEDDIEIANIIRSHLTRQEYSVNWSSTGKEGLEDFRKDEYDLIILDIMLPEID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + L ++ ++ ++ ++KPF L +L V +
Sbjct: 61 GFAVCKNIR-LLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLVELEARVANNIKR 119
>gi|153933899|ref|YP_001383953.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153937109|ref|YP_001387498.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|226948941|ref|YP_002804032.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|152929943|gb|ABS35443.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152933023|gb|ABS38522.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|226842658|gb|ACO85324.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 230
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + + L++ DI+MP+MDGI+
Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|929822|emb|CAA62008.1| FeuP [Rhizobium leguminosarum]
Length = 223
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L +AGY V +G + EP+ ++ DI +PEMDG+
Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|325962246|ref|YP_004240152.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
gi|323468333|gb|ADX72018.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Arthrobacter phenanthrenivorans
Sphe3]
Length = 236
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MN+ K+L+ +D+ ++R L +L AG++VVS NG A L + D++
Sbjct: 1 MNKNGPEAKLLVVDDEPNIRELLSTSLRFAGFDVVSAANGRDALAAADAHAPDLAVLDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P+MDG + RR V+F+T ++KPF L ++V +
Sbjct: 61 LPDMDGFTVTRRLRASGKHFPVLFLTAKDDTEDKVTGLTVGGDDYVTKPFSLDEVVARIR 120
Query: 116 RLLTI 120
+L
Sbjct: 121 AVLRR 125
>gi|317489999|ref|ZP_07948491.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|316910997|gb|EFV32614.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + L ++L A Y V +G ++ + L++ D+++PE DG
Sbjct: 2 KLLIVEDDRLLSNALARSLRDA-YAVDQAFDGEEGLFYAAQDVYDLVVLDVMLPERDGFS 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ +T +A A L+KPF +L+ + +L
Sbjct: 61 VLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR 117
>gi|253998594|ref|YP_003050657.1| putative Fis family two component sigma54 specific transcriptional
regulator [Methylovorus sp. SIP3-4]
gi|313200666|ref|YP_004039324.1| Fis family two component sigma54 specific transcriptional regulator
[Methylovorus sp. MP688]
gi|253985273|gb|ACT50130.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Methylovorus sp. SIP3-4]
gi|312439982|gb|ADQ84088.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Methylovorus sp. MP688]
Length = 464
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL +DD D+ + L L AGY+VV+ NG A + +L+++D+ MP MDG+
Sbjct: 12 RKILAVDDDPDILKLLEMRLVAAGYQVVTAANGEEALAHIGVSRPALVISDLRMPRMDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + DP L V+ +T ++ D+ L+KPF + L+ +V L +
Sbjct: 72 ALFDAIHQADPALPVILLTAHGSIPEAVDATRRGVFGFLTKPFDSKSLLQQVEAALRL 129
>gi|224988879|ref|YP_002643566.1| two component sensory transduction protein [Mycobacterium bovis BCG
str. Tokyo 172]
gi|224771992|dbj|BAH24798.1| two component sensory transduction protein [Mycobacterium bovis BCG
str. Tokyo 172]
Length = 227
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|254449738|ref|ZP_05063175.1| two component transcriptional regulator, winged helix family
[Octadecabacter antarcticus 238]
gi|198264144|gb|EDY88414.1| two component transcriptional regulator, winged helix family
[Octadecabacter antarcticus 238]
Length = 247
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KILL +DD+D+R L + L ++V NGA A K +E + L++ D+ +P+ DG
Sbjct: 24 KKILLVDDDEDLREALGEQLLMTEDFDVFEAGNGAEAMTKAKEGLYDLVILDVGLPDTDG 83
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R + ++ +TG + ++KPF L+ + L
Sbjct: 84 RELCRLMRKQGVKCPIVMLTGHDGDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLR 141
>gi|223936386|ref|ZP_03628298.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223894904|gb|EEF61353.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +L+ EDD + R L Y V +G +P L+L DI++P+M
Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+G E+ R D+ ++ +T ++KPF +R+
Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRE 110
>gi|162295955|gb|ABX83925.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|158335457|ref|YP_001516629.1| sensory box/response regulator [Acaryochloris marina MBIC11017]
gi|158305698|gb|ABW27315.1| sensory box/response regulator, putative [Acaryochloris marina
MBIC11017]
Length = 572
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + + L GY + +NG + ++ P L++ D++MPE+DG +
Sbjct: 3 KILIIEDEPQIRDIIQEILECEGYRTLEADNGLTGLQLAQQSPPDLIVCDVMMPELDGFD 62
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++F+T A ++KPF +L++ ++ L +
Sbjct: 63 VLKGLRANPGIGSIPMIFLTAKTDRASVRKGMNLGADDYITKPFTHLELLSAIDARLKKQ 122
>gi|13471380|ref|NP_102946.1| two-component response regulator [Mesorhizobium loti MAFF303099]
gi|14022122|dbj|BAB48732.1| probable two-component response regulator [Mesorhizobium loti
MAFF303099]
Length = 255
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ R L + L + G V NGA +R + F L++ DI++P +G+
Sbjct: 24 HILIVEDDIEIARMLGETLTENGMIVEIAGNGARMNAALRNQKFDLIVLDIMLPGENGLS 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ +T ++KPF R+L + LL
Sbjct: 84 ICRRLRAHT-NVPILMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRR 139
>gi|297183269|gb|ADI19407.1| response regulators consisting of a chey-like receiver domain and a
winged-helix DNA-binding domain-protein [uncultured
Pseudomonadales bacterium HF0500_12O04]
Length = 222
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ +L ++GY + +G A + + EP+ L++ D+ +P + G+E
Sbjct: 2 RLLLVEDHVPLADELMASLTRSGYALDWLADGRDALYQGQSEPYDLIILDLGLPGISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T ++ + + L+KPFH +L+ V LL +
Sbjct: 62 VLKQWRAQGLATPVLILTARSSWSERIEGLKAGADDYLTKPFHPEELLLRVQALLRRSH 120
>gi|258593899|emb|CBE70242.1| two-component response transcriptional regulator (OmpR family)
[NC10 bacterium 'Dutch sediment']
Length = 244
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ +DD ++ L L G +V + ++G ++ +L++ D+++P + G
Sbjct: 2 HRILVIDDDVELCELLTDYLTPEGIQVEAVHDGGQGAERALSGEHALVVLDVMLPGISGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E+ RR + V+ +T LSKPF+ R+LV + +
Sbjct: 62 EVLRRIRA-GSSVPVLMLTARGDDVDRIVGLEMGADDYLSKPFNPRELVARIRAI 115
>gi|257866229|ref|ZP_05645882.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257873257|ref|ZP_05652910.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257875864|ref|ZP_05655517.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|325567671|ref|ZP_08144338.1| response regulator [Enterococcus casseliflavus ATCC 12755]
gi|257800187|gb|EEV29215.1| transcriptional regulator [Enterococcus casseliflavus EC30]
gi|257807421|gb|EEV36243.1| transcriptional regulator [Enterococcus casseliflavus EC10]
gi|257810030|gb|EEV38850.1| transcriptional regulator [Enterococcus casseliflavus EC20]
gi|325159104|gb|EGC71250.1| response regulator [Enterococcus casseliflavus ATCC 12755]
Length = 241
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMD 60
+ KIL+A+DD ++ L L GYE V +G A K+R LL+ DI+MPEMD
Sbjct: 12 SMKILVADDDKEIVELLSIYLHNEGYESVKAYDGKEALTKIRTTSDIELLILDIMMPEMD 71
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + + ++ +T ++KPF+ +++ V LL
Sbjct: 72 GMQVVKELRKE-SQIPIIMLTAKTTDMDKIRGLVAGADDYVTKPFNPLEVMARVKSLLRR 130
>gi|242239998|ref|YP_002988179.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech703]
gi|242132055|gb|ACS86357.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech703]
Length = 231
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED D++ +L KAL ++G+ V +G +A ++ E ++L++ D+ +P+MDG
Sbjct: 9 RLLLVEDHDELAHWLEKALSESGFAVDRAGDGMTAEQLLQLETYTLMVLDVSLPKMDGFS 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + +L V+ +T VA L+KPF + +L + LL
Sbjct: 69 VLARLRKRGQNLPVLLLTARTDVADRVRGLNLGADDYLAKPFDVAELEARLRALLRR 125
>gi|171778282|ref|ZP_02919488.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282982|gb|EDT48406.1| hypothetical protein STRINF_00330 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ M R L AL GYEV S +G +A DK +E + +++ DI+MP GI+
Sbjct: 2 KVLIAEDEVQMNRVLTTALKHEGYEVDSVFDGQAAVDKAKENAYDVMVMDIMMPRKTGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T A + L+KPF L++L+ + ++ +
Sbjct: 62 AVQEIRQTGNQSHIIMLTAMAEIDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|204930785|ref|ZP_03221658.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204320244|gb|EDZ05448.1| transcriptional activator protein IrlR [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 226
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAY-QPPVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|159027837|emb|CAO87050.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 232
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
K+LL +D+ +R + L +EV + +N A+D + +E L+++DI+MP++DG
Sbjct: 7 KVLLVDDEPGVRESVQAYLQYGDEFEVRTASNANEAWDLLNQEIPELVISDIMMPQVDGY 66
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ E + V+F+T + LSKPF +L + L+
Sbjct: 67 QFLKKLREDARFQTIPVVFLTARGMTSDRIQGYNAGCDAYLSKPFDPEELEALIKSLIER 126
Query: 121 K 121
+
Sbjct: 127 R 127
>gi|85373254|ref|YP_457316.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
gi|84786337|gb|ABC62519.1| two-component response regulator [Erythrobacter litoralis HTCC2594]
Length = 251
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 2 NQKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
++I+ L +DD ++ + AL GY+ + G +A + E P L + DI MP MD
Sbjct: 14 KRRIIALVDDDRNILTTVSIALQSEGYDTRVYSEGDTALKALLENPPDLGVFDIKMPRMD 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR E +L V+F+T +SKPF LR L+ + +L
Sbjct: 74 GMELLRRLRE-HSELPVIFLTSKDDERDEEAGLEMGADDYISKPFSLRLLLARIRAILRR 132
>gi|118581482|ref|YP_902732.1| two component sigma54 specific Fis family transcriptional regulator
[Pelobacter propionicus DSM 2379]
gi|118504192|gb|ABL00675.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter propionicus DSM 2379]
Length = 480
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 62/114 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D++ MR L KAL + G+ V ++G A ++E + L + DI MP M G++
Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
L R E+ DL V+ +T A++ ++ ++KPF L + V ++
Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKV 118
>gi|22125280|ref|NP_668703.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis KIM 10]
gi|45442492|ref|NP_994031.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis biovar
Microtus str. 91001]
gi|108808286|ref|YP_652202.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
Antiqua]
gi|108811448|ref|YP_647215.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
Nepal516]
gi|145599475|ref|YP_001163551.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis
Pestoides F]
gi|162420800|ref|YP_001607462.1| DNA-binding transcriptional regulator BaeR [Yersinia pestis Angola]
gi|165926055|ref|ZP_02221887.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937134|ref|ZP_02225699.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166008422|ref|ZP_02229320.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212312|ref|ZP_02238347.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398888|ref|ZP_02304412.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421266|ref|ZP_02313019.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424469|ref|ZP_02316222.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229838428|ref|ZP_04458587.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229895415|ref|ZP_04510587.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis Pestoides A]
gi|229898995|ref|ZP_04514139.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis biovar Orientalis str. India
195]
gi|229901707|ref|ZP_04516829.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis Nepal516]
gi|270489901|ref|ZP_06206975.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294504581|ref|YP_003568643.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis Z176003]
gi|21958154|gb|AAM84954.1|AE013741_1 transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis KIM 10]
gi|45437357|gb|AAS62908.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis biovar Microtus str. 91001]
gi|108775096|gb|ABG17615.1| two-component system response regulator [Yersinia pestis Nepal516]
gi|108780199|gb|ABG14257.1| two-component system response regulator [Yersinia pestis Antiqua]
gi|145211171|gb|ABP40578.1| two-component system response regulator [Yersinia pestis Pestoides
F]
gi|162353615|gb|ABX87563.1| transcriptional regulatory protein BaeR [Yersinia pestis Angola]
gi|165914997|gb|EDR33609.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165922259|gb|EDR39436.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165992804|gb|EDR45105.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166206243|gb|EDR50723.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960755|gb|EDR56776.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051392|gb|EDR62800.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056351|gb|EDR66120.1| transcriptional regulatory protein BaeR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229681636|gb|EEO77730.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis Nepal516]
gi|229687940|gb|EEO80012.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis biovar Orientalis str. India
195]
gi|229694794|gb|EEO84841.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229701570|gb|EEO89597.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis Pestoides A]
gi|262362424|gb|ACY59145.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis D106004]
gi|262366567|gb|ACY63124.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis D182038]
gi|270338405|gb|EFA49182.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294355040|gb|ADE65381.1| transcriptional response regulatory protein (sensor BaeS) [Yersinia
pestis Z176003]
gi|320014344|gb|ADV97915.1| DNA-binding response regulator in two-component regulatory system
with BaeS [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 239
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DGI L
Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ ++ +T + KP+ R++V V +L
Sbjct: 74 CREIR-RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|239993573|ref|ZP_04714097.1| Transcriptional regulatory protein CpxR [Alteromonas macleodii ATCC
27126]
Length = 237
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY-DKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++ L L GY+V N+G + V + L+L D++MP+MDG +
Sbjct: 10 ILVIDDDLELTEMLSTYLSSMGYQVQVRNDGEEGLSEAVSGRHYDLILLDVMMPKMDGFD 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T L KPF+ R+LV + ++ N
Sbjct: 70 VLKKLRVSHS-TPVLMLTARGDDYDRILGLEMGADDYLPKPFNHRELVARIKAIVRRHN 127
>gi|238028504|ref|YP_002912735.1| DNA-binding response regulator [Burkholderia glumae BGR1]
gi|237877698|gb|ACR30031.1| DNA-binding response regulator [Burkholderia glumae BGR1]
Length = 225
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G V +G +A + E + L+L D+ +P+ DG+E
Sbjct: 7 RILLVEDDRMIAEGVRKALKADGCAVDWVQDGEAALTALGGETYDLMLLDLGLPKRDGVE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R A L V+ IT AV L KPF L +L + L+ +
Sbjct: 67 VLRTARARGHALPVLIITARDAVPDRVKGLDAGADDYLVKPFDLDELAARMRALIRRQ 124
>gi|237729297|ref|ZP_04559778.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
gi|226909026|gb|EEH94944.1| DNA-binding response regulator CreB [Citrobacter sp. 30_2]
Length = 229
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L ED+ + LI L + G+ V + G +K R++ ++ D+ +P++ G EL
Sbjct: 6 IWLVEDEQGIADTLIYMLQQEGFSVEAFERGFPVLEKSRQQCPDAIILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E P L ++F+T + ++KPF R++ V LL
Sbjct: 66 CRRLLERHPALPILFLTARSDEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|213962318|ref|ZP_03390581.1| two-component system sensor histidine kinase/response regulator
hybrid [Capnocytophaga sputigena Capno]
gi|213954984|gb|EEB66303.1| two-component system sensor histidine kinase/response regulator
hybrid [Capnocytophaga sputigena Capno]
Length = 1347
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+DDMR ++ L + + V+ +G + L+++DI+MP+ DGI
Sbjct: 1094 ETILVVEDNDDMRDYIQHILSEH-FHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGI 1152
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLT 119
+ + E + ++ +T + + + ++KPF + L + LL+
Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212
Query: 120 IK 121
K
Sbjct: 1213 RK 1214
>gi|254415503|ref|ZP_05029263.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196177684|gb|EDX72688.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 510
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D + + L KAG+ V++ +G A V L+L D+VMPEMDG E+
Sbjct: 8 ILLVDDTVANLQLVSDFLMKAGFNVLAVKSGIQALKIVAITEPDLILLDVVMPEMDGFEV 67
Query: 65 ARRAT--ELDPDLKVMFITGFAAVA---LNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR E D+ V+F+T A A +SKP L +++ V L
Sbjct: 68 CRRLKAQEETQDIPVIFMTAVADRANPSYKIKGLKLGAVDYISKPIQLEEVLLRVQTHLQ 127
Query: 120 IK 121
++
Sbjct: 128 LR 129
>gi|78777953|ref|YP_394268.1| two component transcriptional regulator [Sulfurimonas denitrificans
DSM 1251]
gi|78498493|gb|ABB45033.1| two component transcriptional regulator, winged helix family
[Sulfurimonas denitrificans DSM 1251]
Length = 220
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD ++ L + L + G++VV+ ++ A ++ EPF L++ D+ +P MDG+
Sbjct: 2 KKILMIEDDLELAEILTEYLQQFGFDVVTEDDPFKAVSILKLEPFDLVILDLTLPGMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ E D+ ++ + + V + + KP+ R+L ++ +L
Sbjct: 62 EVCEAIRERQ-DIPIIISSARSDVTDKVKALELGADDYIPKPYDPRELEARIHSVLRR 118
>gi|152974657|ref|YP_001374174.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152023409|gb|ABS21179.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 235
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N ILL +D+ + + L L K G+ + + + A V + + L++ D+++P
Sbjct: 3 NANILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D + F+T + ++KPF+ ++V + L
Sbjct: 63 GFDICPIIRQKT-DCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|115526887|ref|YP_783798.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115520834|gb|ABJ08818.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 221
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + L + L AGY V +G A+ + E ++ ++ D+ +P MDG+
Sbjct: 2 RVLVVEDDRRIAADLTRGLEAAGYVVEVVGDGEEAWFRGDTEDYAAIILDLGLPGMDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D + V+ +T + A D L KPF + +L+ + ++
Sbjct: 62 VLKRWRSNDRRIPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118
>gi|308175054|ref|YP_003921759.1| transcriptional regulatory protein YvrHb [Bacillus
amyloliquefaciens DSM 7]
gi|307607918|emb|CBI44289.1| Transcriptional regulatory protein YvrHb [Bacillus
amyloliquefaciens DSM 7]
gi|328555023|gb|AEB25515.1| Transcriptional regulatory protein YvrHb [Bacillus
amyloliquefaciens TA208]
gi|328913378|gb|AEB64974.1| Transcriptional regulatory protein YvrHb [Bacillus
amyloliquefaciens LL3]
Length = 239
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N IL+ +D+ + + + L K GY + + + A + V+ E LL+ D++M M
Sbjct: 3 NASILIVDDEKAIVDMVKRVLVKEGYHNIKTAGSAEEAIEFVKHETADLLVLDVMMEGMS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E D + F+T ++ A A ++KPF+ +L + L
Sbjct: 63 GFEACTEIRN-YTDAPIFFLTARSSDADKLSGFALGADDYITKPFNPLELAARIRATLKR 121
>gi|298374088|ref|ZP_06984046.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_19]
gi|298268456|gb|EFI10111.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_19]
Length = 1359
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D R F+ +L Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1230
>gi|284051060|ref|ZP_06381270.1| two component transcriptional regulator [Arthrospira platensis str.
Paraca]
Length = 236
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+QKIL+ +DD +R + + L + YEV S +G +A L++ D+ +P+ G
Sbjct: 3 SQKILVVDDDPAIRNLISRYLTQQNYEVESAKDGETALQLFDAFNPDLVILDVNLPDTTG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T A ++KPF L +L V +L +
Sbjct: 63 FALCQEMQSRTR-VFVLLLTSLTGEADKIKGFDLGADDYITKPFGLAELGARVRAILKRQ 121
>gi|260554988|ref|ZP_05827209.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|260411530|gb|EEX04827.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
Length = 247
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|284028988|ref|YP_003378919.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283808281|gb|ADB30120.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 225
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ L L K G+EV G A D+ ++L D+++P +
Sbjct: 1 MT-RVLVVEDEESYSDALSYVLRKEGFEVAVAETGPDALDEYDRAGADIVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R ++ V+ ++ ++KP+ R+L+ + +L
Sbjct: 60 GTEVCRALRTRG-NVPVIIVSAKDTEVDKVVGLELGADDYVTKPYSPRELLARIKAVLRR 118
>gi|160941611|ref|ZP_02088941.1| hypothetical protein CLOBOL_06510 [Clostridium bolteae ATCC
BAA-613]
gi|158435453|gb|EDP13220.1| hypothetical protein CLOBOL_06510 [Clostridium bolteae ATCC
BAA-613]
Length = 174
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL A+DD ++R + L GY+VV NG A ++ F L++ D++MP +G
Sbjct: 3 KRKILFADDDPEIREVVRILLESEGYQVVEAENGEQA-ASAADDTFDLIILDVMMPGRNG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++F+T + L+KPF +L V ++
Sbjct: 62 FSACAEIRRKL-NTPILFLTARTQDSDKTMGFGAGGDDYLAKPFSYAELAARVKAMIRRY 120
Query: 122 N 122
+
Sbjct: 121 H 121
>gi|41410081|ref|NP_962917.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118466224|ref|YP_883789.1| DNA-binding response regulator [Mycobacterium avium 104]
gi|254777097|ref|ZP_05218613.1| DNA-binding response regulator [Mycobacterium avium subsp. avium
ATCC 25291]
gi|41398914|gb|AAS06533.1| RegX3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118167511|gb|ABK68408.1| DNA-binding response regulator [Mycobacterium avium 104]
Length = 227
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G++A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGSAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|18450333|ref|NP_569204.1| hypothetical protein pli0051 [Listeria innocua Clip11262]
gi|16415834|emb|CAC42049.1| pli0051 [Listeria innocua Clip11262]
Length = 240
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ IL+ EDD +R+ + L Y + + G +A +V +++ D+ +P+
Sbjct: 1 MNKNASILVVEDDKAIRKLITTTLETRNYNFYTADTGNAALIQVTSRQPDIIILDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG + +R E + ++ ++ + + + L+KPF + +L+ + L
Sbjct: 61 MDGTTIIQRVRE-WSQVPIIVVSARSEDSDKIVALDMGADDFLTKPFSVEELLARIRVSL 119
Query: 119 TIK 121
+
Sbjct: 120 RRR 122
>gi|114565051|ref|YP_752565.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114336344|gb|ABI73726.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 225
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + AL Y V +G +A +R + + ++L D+ +P++DG++
Sbjct: 2 RILLVEDDKMIGDAMQSALKDVAYAVDWICDGEAALHSLRCQQYDVVLLDLGLPKLDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + P L V+ +T ++ L KPF + +L+ + + T +N
Sbjct: 62 VMQYIRAQHPALAVIILTARDSLEDRVKGLDLGADDYLVKPFDITELLARIRAV-TRRN 119
>gi|325916362|ref|ZP_08178637.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325537410|gb|EGD09131.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
Length = 242
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD D+R+ + + L GY+V N A ++ + L++ D++MP DG+
Sbjct: 10 RVLVVDDDPDLRKLIGEFLSTHGYQVDVAENVADMRTRMAQHRPDLIVLDVMMPGEDGLS 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 70 AARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 126
>gi|320638620|gb|EFX08325.1| DNA-binding response regulator CreB [Escherichia coli O157:H7 str.
G5101]
Length = 229
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R++ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLLYMLQQEGFAVEVFERGLPVLDKARQQVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|251794919|ref|YP_003009650.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
JDR-2]
gi|247542545|gb|ACS99563.1| signal transduction histidine kinase, LytS [Paenibacillus sp.
JDR-2]
Length = 1112
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDG 61
KILL +DD + L + + Y V NG A +++ SL+L D++MP + G
Sbjct: 772 KILLVDDDSSNIKVLQELFPSSRYHVFVAYNGEDALKLIKQHRGELSLVLLDVMMPGLSG 831
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR E +P L V+ +T + A L KPF ++L+ V LL
Sbjct: 832 YEVCRRIREENPLYQLPVLLLTVRNSPADIALGFEAGANDFLVKPFSGKELLARVQTLLQ 891
Query: 120 IK 121
+K
Sbjct: 892 MK 893
>gi|256829012|ref|YP_003157740.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256578188|gb|ACU89324.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 1044
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 5/119 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+AEDD+ + L K G+EVV+ +NG +++ E+ F L+L DI MPEMDGI
Sbjct: 921 RKILVAEDDEVNLFAVRNLLTKNGHEVVTAHNGHEVLERIMEQDFDLVLMDIQMPEMDGI 980
Query: 63 ELARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
E RR + ++ +T +A +SKPF ++ L+ +
Sbjct: 981 EATRRIRVTEQATGKKPVPIIAMTAYAMNGDREKLLDKGVDGYVSKPFSIKTLMEVIKE 1039
>gi|167645552|ref|YP_001683215.1| two component transcriptional regulator [Caulobacter sp. K31]
gi|167347982|gb|ABZ70717.1| two component transcriptional regulator, winged helix family
[Caulobacter sp. K31]
Length = 261
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R + LG+ GY + + ++ + + P L++ DI++P DG+
Sbjct: 29 RILIVDDDPGIRDVVSDFLGRHGYVIDTASDSRTMEQALARGPVDLIVLDIMLPGEDGLA 88
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + D ++ ++ L KP + R+L+ + +L +
Sbjct: 89 ICRRLSAAD-GPAIIMLSAMGEETDRIVGLELGADDYLPKPCNPRELLARIRAVLRRR 145
>gi|90961187|ref|YP_535103.1| two-component response regulator [Lactobacillus salivarius UCC118]
gi|90820381|gb|ABD99020.1| Two-component response regulator [Lactobacillus salivarius UCC118]
Length = 229
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD D+ L + GYEV NG A K+ P +L++ D++MP+MDG+
Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKAYNGKEALSKLNMNPDIALMILDVMMPQMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + V+ ++ ++KPF+ +++ V LL
Sbjct: 62 EVIREVRKE-SQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|39936994|ref|NP_949270.1| sensor histidine kinase [Rhodopseudomonas palustris CGA009]
gi|39650851|emb|CAE29374.1| sensor histidine kinase with multiple PAS and a response regulator
receiver domain [Rhodopseudomonas palustris CGA009]
Length = 1021
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+D+ DMR ++ + LG A YEV + +G +A + V++ L+L+D++MP +DG+
Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + DL V+F++ A + LSKPF R+L+ V L
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANL 759
>gi|85715363|ref|ZP_01046345.1| two component transcriptional regulatory protein [Nitrobacter sp.
Nb-311A]
gi|85697784|gb|EAQ35659.1| two component transcriptional regulatory protein [Nitrobacter sp.
Nb-311A]
Length = 223
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLATALTDAGYVVDRAFDGEEGHFLGDSEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVTKPFHLEEILARMRALLRR 118
>gi|16803100|ref|NP_464585.1| hypothetical protein lmo1060 [Listeria monocytogenes EGD-e]
gi|47096149|ref|ZP_00233749.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes str. 1/2a F6854]
gi|224500297|ref|ZP_03668646.1| hypothetical protein LmonF1_11754 [Listeria monocytogenes Finland
1988]
gi|224502626|ref|ZP_03670933.1| hypothetical protein LmonFR_08914 [Listeria monocytogenes FSL
R2-561]
gi|254828437|ref|ZP_05233124.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes FSL N3-165]
gi|254830171|ref|ZP_05234826.1| hypothetical protein Lmon1_02380 [Listeria monocytogenes 10403S]
gi|254898767|ref|ZP_05258691.1| hypothetical protein LmonJ_03090 [Listeria monocytogenes J0161]
gi|254911744|ref|ZP_05261756.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes J2818]
gi|254936070|ref|ZP_05267767.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes F6900]
gi|284801392|ref|YP_003413257.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
gi|284994534|ref|YP_003416302.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
gi|16410462|emb|CAC99138.1| lmo1060 [Listeria monocytogenes EGD-e]
gi|47015498|gb|EAL06431.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes str. 1/2a F6854]
gi|258600833|gb|EEW14158.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes FSL N3-165]
gi|258608660|gb|EEW21268.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes F6900]
gi|284056954|gb|ADB67895.1| hypothetical protein LM5578_1143 [Listeria monocytogenes 08-5578]
gi|284060001|gb|ADB70940.1| hypothetical protein LM5923_1097 [Listeria monocytogenes 08-5923]
gi|293589695|gb|EFF98029.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Listeria monocytogenes J2818]
Length = 220
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+AEDD + + L +AGY+V++ NG AY ++E F L++ DI+MP MDG
Sbjct: 2 EKILIAEDDSAILGVITAFLTEAGYQVMTAKNGIEAYHLFQKETFDLIIMDIMMPSMDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L ++ +T + + KPF L+ V LL N
Sbjct: 62 TLTELIRS-TSTTPILMMTALSEEDDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRVN 120
>gi|255013019|ref|ZP_05285145.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides sp. 2_1_7]
Length = 1359
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D R F+ +L Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1112 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1170
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1171 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1230
>gi|239993470|ref|ZP_04713994.1| response regulator in two-component regulatory system with PhoQ
[Alteromonas macleodii ATCC 27126]
Length = 224
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L L + GY V +NG A ++E + L + DI MP++DG E
Sbjct: 2 RILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYSYDLAIVDIGMPKLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+A + D ++ +T + L+KPFH +L+ L+
Sbjct: 62 VIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRR 118
>gi|271961841|ref|YP_003336037.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
gi|270505016|gb|ACZ83294.1| response regulator receiver protein [Streptosporangium roseum DSM
43021]
Length = 224
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R L AL +EV S +G +++ +++ D+++P +DG E
Sbjct: 3 RVLLIEDDPSVRNALTLALKGRDHEVESAASGEDGLERLARFAADVVVLDLMLPGIDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ ++ + KP + L + +L
Sbjct: 63 VCRRIRAA-SSTSIVMLSARGDDFDVVGGLEAGADDYVVKPVRPQVLEARIRAVLRR 118
>gi|226309996|ref|YP_002769890.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226092944|dbj|BAH41386.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 235
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGI 62
K+LL ED+ +R F+ L + GYEV+ G A D ++ + + D+++P +DG
Sbjct: 2 KVLLLEDEKSIRDFVRINLKREGYEVIEAGTGEEALDLADQQTDIVIAILDVMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + P L ++ +T + +SKPF +L+ V L
Sbjct: 62 EVCGQLRKKYPRLGIIMLTAKSQELDKVMGLEFGADDYVSKPFSPAELLARVKALHRR 119
>gi|218710599|ref|YP_002418220.1| putative response regulator [Vibrio splendidus LGP32]
gi|218323618|emb|CAV19887.1| putative response regulator [Vibrio splendidus LGP32]
Length = 244
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M K IL+ +D D+ L + L ++ + V++ G + K+ L++ DI++P
Sbjct: 9 MTNKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGD 68
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L ++ L + ++ +T A ++K F+ R+L+ + LL
Sbjct: 69 DGLTLCQKLR-LQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLR 127
Query: 120 I 120
Sbjct: 128 R 128
>gi|110644669|ref|YP_672399.1| DNA-binding response regulator [Escherichia coli 536]
gi|23954247|emb|CAD42044.1| hypothetical protein [Escherichia coli]
gi|110346261|gb|ABG72498.1| DNA-binding response regulator [Escherichia coli 536]
Length = 239
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTSYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|91779387|ref|YP_554595.1| two component heavy metal response transcriptional regulator
[Burkholderia xenovorans LB400]
gi|91692047|gb|ABE35245.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia xenovorans LB400]
Length = 226
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +L K L +AGY V +G + + E + LL+ D+++P DG
Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAEDGVTGQHQAETEDYDLLILDVMLPGQDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L V+F+T V L+KPF +LV V +L
Sbjct: 62 LLHNLRRTRS-TPVLFLTARDDVGDRVRGLELGADDYLAKPFDFVELVARVRSILRR 117
>gi|125623751|ref|YP_001032234.1| two-component system regulator llrA [Lactococcus lactis subsp.
cremoris MG1363]
gi|8177554|gb|AAF73970.1| putative response regulator Rra [Lactococcus lactis subsp. cremoris
MG1363]
gi|124492559|emb|CAL97502.1| two-component system regulator llrA [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070520|gb|ADJ59920.1| two-component system regulator llrA [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 230
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ ED+ ++ RF+ L GY +NG S ++ + + L+L D+++PE+DG
Sbjct: 3 SKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGIEEATSKDYDLILLDLMLPELDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ARR + D ++ +T + ++KPF + +L+ V +
Sbjct: 63 FEVARRLRKE-KDTPIIMMTARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRRE 121
>gi|37519850|ref|NP_923227.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35210841|dbj|BAC88222.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 230
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAEDD+ + L + L Y V +G +A+ + +LL D+++PE+DG
Sbjct: 3 RILLAEDDERIAIPLAEDLTHQHYLVDVAADGKAAWHYATSYHYDVLLLDVMLPEIDGFA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E + ++ +T L KPF L +L V LL
Sbjct: 63 LCRRLREAGYEQPILMLTALDRTTDRVAGLDSGADDYLVKPFSLEELGARVRALLRR 119
>gi|300866673|ref|ZP_07111359.1| Sensor protein [Oscillatoria sp. PCC 6506]
gi|300335347|emb|CBN56519.1| Sensor protein [Oscillatoria sp. PCC 6506]
Length = 425
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ L +AL A Y+V +G A +V L+L DI MP MDG E
Sbjct: 9 ILIVDDNTTNLSVLSQALKAAQYKVRMATDGEDALAQVERHHPELILLDIEMPNMDGFET 68
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++F+T A + ++KPF +++ + +K
Sbjct: 69 CRRLQANPTTQGIPIIFMTSLADTEKKVKGLSLGAVDYITKPFEASEVLARIKVHWRLK 127
>gi|298246790|ref|ZP_06970595.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297549449|gb|EFH83315.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 236
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED ++ R + + L Y V +G SA +E L++ D ++PE+DG+E+
Sbjct: 4 ILLVEDAPELARAIKQELEAQDYWVFHVGDGKSALSMHNKERPDLVILDWMLPELDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ P V+ +T + L+KPF +R+L+ V +L
Sbjct: 64 LRRMRQVAP-TPVLMLTARSEEIDRVIGLEVGADDYLTKPFSMRELLARVRAMLRR 118
>gi|116872456|ref|YP_849237.1| CheY family two-component response regulator [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741334|emb|CAK20456.1| two-component response regulator, CheY family [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 220
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+AEDD + + L +AGY+V + NG AY ++E F L++ DI+MP MDG
Sbjct: 2 EKILIAEDDVTILGVITAFLTEAGYQVTTAQNGIEAYHFFQKEAFDLIIMDIMMPSMDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L ++ +T + + + KPF L+ V LL N
Sbjct: 62 TLTELIRS-TSSAPILMMTALSEESDELKGFDLGADDYIQKPFSYLVLLKRVQVLLRRSN 120
>gi|28870545|ref|NP_793164.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213970019|ref|ZP_03398151.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
gi|301381374|ref|ZP_07229792.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
Max13]
gi|302062145|ref|ZP_07253686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
K40]
gi|302130455|ref|ZP_07256445.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|28853793|gb|AAO56859.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato
str. DC3000]
gi|213925123|gb|EEB58686.1| DNA-binding response regulator [Pseudomonas syringae pv. tomato T1]
Length = 222
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + A + L+KPFH +L + LL +
Sbjct: 62 VLQQWRGKGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|22536308|ref|NP_687159.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|77412156|ref|ZP_00788478.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
gi|22533130|gb|AAM99031.1|AE014196_27 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|77161774|gb|EAO72763.1| DNA-binding response regulator [Streptococcus agalactiae CJB111]
Length = 223
Score = 141 bits (357), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG +
Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ ++ +T + + + KP L++L + LL N
Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121
>gi|254230838|ref|ZP_04924165.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis C]
gi|124599897|gb|EAY58907.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis C]
Length = 250
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 67 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>gi|29833315|ref|NP_827949.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29610437|dbj|BAC74484.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 262
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD D+ L AL G+EV + +GA A D+ R+ ++ D+++P+ DG
Sbjct: 35 RVLVVDDDPDLAEVLSGALRYEGWEVRAAGDGARAVDEARDLLPDAVVLDVMLPDTDGFA 94
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + PD+ V+F+T AV ++KPF L ++V + LL
Sbjct: 95 VLRELRTVRPDVCVLFLTARDAVEDRIAGITAGGDDYVTKPFSLEEVVARLRGLLRR 151
>gi|92117426|ref|YP_577155.1| two component transcriptional regulator [Nitrobacter hamburgensis
X14]
gi|91800320|gb|ABE62695.1| two component transcriptional regulator, winged helix family
[Nitrobacter hamburgensis X14]
Length = 221
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + + + L +GY V + NG A+ E + ++ D+ +P MDG+
Sbjct: 2 RVLVVEDDQRIAADVSRTLEASGYVVETVANGEDAWFLGDTEDYGAVILDLGLPGMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+ +T + A D L KPF + +L+ + ++
Sbjct: 62 VLKRWRANGRHMPVLVLTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118
>gi|313105813|ref|ZP_07792076.1| two-component response regulator [Pseudomonas aeruginosa 39016]
gi|310878578|gb|EFQ37172.1| two-component response regulator [Pseudomonas aeruginosa 39016]
Length = 253
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 24 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ ++ A + L KPF L +L ++ +L
Sbjct: 84 ILRQLRQEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 139
>gi|298290157|ref|YP_003692096.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296926668|gb|ADH87477.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 239
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD D+R L+ LG GY+V + +GA + L++ DI++P DG+
Sbjct: 5 RVLLVEDDRDIRSLLVDFLGGEGYDVEAVGSGALMDRALMRGMPDLVILDIMLPGEDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T L KPF+ R+L+ + LL
Sbjct: 65 ICRRLR-TKSRVPILMLTAKHDDIDRIVGLEIGADDYLGKPFNPRELLARIRALLRR 120
>gi|262164517|ref|ZP_06032255.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
VM223]
gi|262026897|gb|EEY45564.1| pole remodelling regulatory diguanylate cyclase [Vibrio mimicus
VM223]
Length = 376
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ + R L L Y ++ +GA A ++ L+L DI+MPE
Sbjct: 1 MSELETILIVDDNPENRALLAGLLKPH-YRLLVATSGAQALTICHKQKPDLVLLDIMMPE 59
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ +R D+ V+F+T + + + KP L+
Sbjct: 60 MDGYEVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRT 119
Query: 117 LLTIK 121
L ++
Sbjct: 120 HLRLR 124
>gi|153938900|ref|YP_001390952.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152934796|gb|ABS40294.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295319014|gb|ADF99391.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 230
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + + L++ DI+MP+MDGI+
Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|210617979|ref|ZP_03291838.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
gi|210149053|gb|EEA80062.1| hypothetical protein CLONEX_04070 [Clostridium nexile DSM 1787]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPE 58
M + KIL+ +D+ MR+ + L + G+ ++ +G A D E +L++ D++MP
Sbjct: 1 MEKLKILVVDDESRMRKLVKDFLEREGHIIIEAADGMEAMDIFYENKDIALIILDVMMPR 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R L + ++ +T + +SKPF + LV VN +L
Sbjct: 61 MDGWQVCREVRAL-SQVPIIMLTARGEERDELQGFELGVDEYISKPFSPKILVARVNAIL 119
Query: 119 TI 120
Sbjct: 120 KR 121
>gi|163796383|ref|ZP_02190343.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [alpha proteobacterium
BAL199]
gi|159178233|gb|EDP62777.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [alpha proteobacterium
BAL199]
Length = 233
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + AL G+EV + +G A + + P L + DI MP +D
Sbjct: 1 MASTIALVDDDQNILTSVTMALEAEGFEVRTYKDGEEALRGLTQRPVDLAVLDIKMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF R L+ + LL
Sbjct: 61 GMELLQRLRK-GSAVPVIFLTSKDDEVDEVLGLRMGADDYIKKPFSQRLLIERIRALLRR 119
Query: 121 K 121
+
Sbjct: 120 Q 120
>gi|332345860|gb|AEE59194.1| nitrogen regulation protein NR(I) NtrC [Escherichia coli UMNK88]
Length = 469
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAVVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|318061543|ref|ZP_07980264.1| two-component system response regulator [Streptomyces sp. SA3_actG]
Length = 240
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDDD +R AL + G+ V + +G + R + L D+++P MDG+
Sbjct: 12 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF + LV + ++
Sbjct: 72 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127
>gi|326792833|ref|YP_004310654.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326543597|gb|ADZ85456.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+I + ED+ + + L K GYEV + +G + ++ + L+L DI++P+ DG+
Sbjct: 2 QRIGIIEDEKAISDIIKYNLEKDGYEVYTAYDGEEGLNLIKTKDLDLVLLDIMLPKKDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + + ++ ++ I+ A + ++KPF +R+++ V L K
Sbjct: 62 EICKEIRQ-TKEVPIIIISAKADEIDKVLALELGADDYVTKPFGMREVMARVKARLRRK 119
>gi|256838638|ref|ZP_05544148.1| two-component system sensor histidine kinase/response regulator
[Parabacteroides sp. D13]
gi|256739557|gb|EEU52881.1| two-component system sensor histidine kinase/response regulator
[Parabacteroides sp. D13]
Length = 1364
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D R F+ +L Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1117 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1175
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1176 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1235
>gi|312193413|ref|YP_003991079.1| transcriptional regulator [Geobacillus sp. Y4.1MC1]
gi|311217865|gb|ADP76468.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. Y4.1MC1]
Length = 237
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N +IL+ +D++ + L K G+ V +C NG A + ++ F L++ DI++P++
Sbjct: 3 NARILIVDDEEAILNMLKLVFNKEGFTSVHTCTNGTDALHLLEQKKFDLIILDIMLPDLS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + D + FI+ ++ A ++KPF+ ++V V L
Sbjct: 63 GLEMCRAIRK-GCDAPLFFISAKSSDLDKLTGFAHGCDDYITKPFNPLEVVARVKAQLQR 121
>gi|239834066|ref|ZP_04682394.1| two component transcriptional regulator [Ochrobactrum intermedium
LMG 3301]
gi|239822129|gb|EEQ93698.1| two component transcriptional regulator [Ochrobactrum intermedium
LMG 3301]
Length = 233
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R+ L L GY VV +G+ A +++ + +++ D+ +P+ DG
Sbjct: 7 KILVVDDEPAIRKLLRVGLTTEGYTVVEAADGSQADERIAMDKPDIVVLDLGLPDTDGHT 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R E L ++ ++ A + + KPF +++L + L +
Sbjct: 67 LLQRWRENGISLPILILSSRTDEAGIVRALEEGADDYIPKPFGMKELAARLRVALRHR 124
>gi|296140929|ref|YP_003648172.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
gi|296029063|gb|ADG79833.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length = 224
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + R L L GYEV + +G SA RE +++ D+ +P++DG+ +
Sbjct: 4 VLVVDDEPAICRTLRINLKARGYEVETATDGRSALQIARERTPDVVILDLGLPDIDGVTV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E V+ ++ +S ++KPF + + + V +
Sbjct: 64 LSKLREFCAS-PVIVLSARHGSDDKVESLDAGADDYVTKPFGMDEFLARVRAQVRR 118
>gi|223674577|gb|ACN12984.1| PhoP [Streptomyces clavuligerus ATCC 27064]
Length = 175
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVAATGPEGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|222111377|ref|YP_002553641.1| winged helix family two component heavy metal response
transcriptional regulator [Acidovorax ebreus TPSY]
gi|221730821|gb|ACM33641.1| two component heavy metal response transcriptional regulator,
winged helix family [Acidovorax ebreus TPSY]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AGY NG + L++ D+++P ++G +
Sbjct: 2 KILIVEDEPKTGAYLRQGLSEAGYSCDLVPNGGDGLHMAIHGQYDLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|153813051|ref|ZP_01965719.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
gi|160894161|ref|ZP_02074939.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
gi|149830853|gb|EDM85943.1| hypothetical protein RUMOBE_03459 [Ruminococcus obeum ATCC 29174]
gi|156864194|gb|EDO57625.1| hypothetical protein CLOL250_01715 [Clostridium sp. L2-50]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFFSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|332142261|ref|YP_004427999.1| two-component response regulator [Alteromonas macleodii str. 'Deep
ecotype']
gi|327552283|gb|AEA99001.1| two-component response regulator [Alteromonas macleodii str. 'Deep
ecotype']
Length = 298
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 50/114 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L AL G+ + NG A V + ++L D VMPEMDG E
Sbjct: 8 VLVVDDSPESLGMLNVALNTQGFTALVALNGVQALAIVEKVKPDVILLDAVMPEMDGFET 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ E P+ ++F+TG + ++KP +++ + +
Sbjct: 68 CKKLKEALPNTPIIFMTGLTEIDDVVKGFDAGGIDYVTKPIAPDEVIARIKTHI 121
>gi|312130452|ref|YP_003997792.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
gi|311906998|gb|ADQ17439.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
Length = 222
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 57/116 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD+D+ LI L K Y+V S NG A + +E ++L DI+MP +D
Sbjct: 1 MNGKILVVDDDEDILELLIYNLEKEQYQVRSAENGLKAIEVAKEFQPDIILMDIMMPLLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
GIE + P ++++T A + ++KP R L++ +
Sbjct: 61 GIEAGKIIKTEQPQTHLIYLTARAEEYSEVAAFEVGADDYITKPIKPRALLSRIQA 116
>gi|315504995|ref|YP_004083882.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
gi|315411614|gb|ADU09731.1| two component transcriptional regulator, winged helix family
[Micromonospora sp. L5]
Length = 230
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + + + L + G+EV +G SA R + +++ D+ +P +D
Sbjct: 1 MGVRVLVVDDERSLAKVVASYLERDGHEVSCVFDGRSAVAAARRDRPDVVVLDLALPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIE+ R+ D V+ +T + L+KPF R+LV + +L
Sbjct: 61 GIEVCRQIRTFT-DCYVVMLTARSEEVDKLIGLGVGADDYLTKPFSPRELVARIRAML 117
>gi|269137752|ref|YP_003294452.1| DNA-binding response regulator in two-component regulatory system
with BasS [Edwardsiella tarda EIB202]
gi|267983412|gb|ACY83241.1| DNA-binding response regulator in two-component regulatory system
with BasS [Edwardsiella tarda EIB202]
gi|304557809|gb|ADM40473.1| Transcriptional regulatory protein basR/pmrA [Edwardsiella tarda
FL6-60]
Length = 220
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD +++ L +A+ + Y N ASA ++ +SL++ D+ +P MDG
Sbjct: 2 KILIVEDDTLIQQGLAQAMARENYACDCAGNAASASALLQSGHYSLIILDLGLPGMDGAS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T V+ L KPF L +L+ V L+
Sbjct: 62 ALRQWRREGIDAPVLILTARDTVSDRVGGLDAGADDYLVKPFALAELLARVRALIRR 118
>gi|188990198|ref|YP_001902208.1| two-component system response regulator protein [Xanthomonas
campestris pv. campestris str. B100]
gi|167731958|emb|CAP50144.1| two-component system response regulator protein [Xanthomonas
campestris pv. campestris]
Length = 280
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A ++ + L++ D++MP DG+
Sbjct: 49 VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRITQRRPDLIVLDVMMPGEDGLSA 108
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 109 ARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 164
>gi|119493874|ref|ZP_01624439.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
8106]
gi|119452386|gb|EAW33577.1| two-component system sensory histidine kinase [Lyngbya sp. PCC
8106]
Length = 435
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + R L L + GYE+ NG A V+ +P L+L DI MP++DG ++
Sbjct: 13 ILIVDDTPNNLRVLSSILQEQGYEIRKAVNGKMAIRSVQADPPDLVLLDIKMPDLDGYQV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E D+ V+F++ V + ++KPF + +++ V LT++
Sbjct: 73 CSQLKAIEATRDIPVIFLSALDDVFNKVLAFQVGGVDYITKPFQVEEVLVRVKTHLTLR 131
>gi|329907282|ref|ZP_08274600.1| Two-component response regulator [Oxalobacteraceae bacterium
IMCC9480]
gi|327547047|gb|EGF31933.1| Two-component response regulator [Oxalobacteraceae bacterium
IMCC9480]
Length = 242
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+R L L G+ + +NG + L++ D+ +P DG+ L
Sbjct: 7 ILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTLPGEDGLTL 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R L V+ +T L+KPF R+L + +L N
Sbjct: 67 CRNLRAQ-SSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTN 123
>gi|323494003|ref|ZP_08099119.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
gi|323311630|gb|EGA64778.1| response regulator BaeR [Vibrio brasiliensis LMG 20546]
Length = 221
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L +GY+ +GA D VR+ L+L D+++P DG+++
Sbjct: 2 ILIVEDEPSLASVVADYLSHSGYQTHIIGDGAEVIDWVRQYNPDLILLDLMLPNRDGLDI 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ ++ T + KP+ R+LV V +L
Sbjct: 62 YRELRS-FSDIPIIMATAKVDEIDRLLGLELGADDYVCKPYSPRELVARVKNVLRR 116
>gi|259503600|ref|ZP_05746502.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
gi|259168424|gb|EEW52919.1| DNA-binding response regulator [Lactobacillus antri DSM 16041]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++++ F+ L GY+ +G + + + F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEENLANFVNLELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ARR EL D ++ +T +V + KPF + +L+ V LL
Sbjct: 60 GIEVARRVREL-KDTPIIIMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRR 118
>gi|300771641|ref|ZP_07081516.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300761630|gb|EFK58451.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 56/113 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL ED+ + L L G+ V C+NG A+ +E+ + LLL D++MP MDG EL
Sbjct: 4 ILYVEDEAGLAMILSDTLRSHGFAVTHCDNGGEAFSTFQEQKYDLLLIDVMMPVMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
A++ +D D+ ++F+T + KPF + +L+ + L
Sbjct: 64 AKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEELIVRIEAL 116
>gi|157273298|gb|ABV27197.1| response regulator HsfA [Candidatus Chloracidobacterium
thermophilum]
Length = 480
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQK---ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+ + IL+ +D+ MR L + GY NGA A + +R + F ++L+D+ MP
Sbjct: 1 MSNRVPSILIVDDELSMRELLDHVFRREGYRTFIAENGAQALEALRGKVFDVVLSDVKMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G EL ++ PD V+ +T V ++ + KPF + +L V
Sbjct: 61 RLSGTELLHECRQISPDTVVILMTAHGTVEQAREAFKLGADDFIQKPFDIDELKLIVKNA 120
Query: 118 LT 119
L
Sbjct: 121 LE 122
>gi|148283360|gb|ABQ57262.1| AdeR [Acinetobacter baumannii]
Length = 220
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 10 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 70 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 124
>gi|114152683|gb|ABI52588.1| two-component response regulator [Bacillus cytotoxicus]
Length = 235
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N ILL +D+ + + L L K G+ + + + A V + + L++ D+++P
Sbjct: 3 NANILLVDDESAILQLLTTILQKEGFSHITTATSAEEALLLVEDHSYDLMILDVMLPGQS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D + F+T + ++KPF+ ++V + L
Sbjct: 63 GFDICPIIRQKT-DCPIFFLTAKTSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|257485787|ref|ZP_05639828.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|302130309|ref|ZP_07256299.1| heavy metal response regulator [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|6045171|dbj|BAA85309.1| ORFR [Pseudomonas syringae]
gi|331012883|gb|EGH92939.1| heavy metal response regulator [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T V L KPF +L+ V LL
Sbjct: 62 VIRRLRTAGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|88860719|ref|ZP_01135356.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
gi|88817314|gb|EAR27132.1| DNA-binding response regulator BaeR [Pseudoalteromonas tunicata D2]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED+ + + L+ L G+EV + ++GA A +++ + ++ D+++P D
Sbjct: 1 MATKVLVVEDEVKIAQILVDFLTLDGFEVTTIHDGADAVLQIKNQQPDFVILDLMLPNKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + ++ ++ +T + KPF R++V V +L
Sbjct: 61 GLTICKEVRQ-FSNVPILMLTARVDEIDRLMGLEFGADDYVCKPFLPREVVARVKTILRR 119
>gi|326388499|ref|ZP_08210093.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206964|gb|EGD57787.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 268
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L +DD ++ + AL G+ +GA+A + E P L + DI MP MDG+EL
Sbjct: 34 IALVDDDRNILTTVSIALQAEGFATRVYYDGAAALKAIGENPPDLAVFDIKMPRMDGLEL 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E DL V+F+T A A + ++KPF R L+ + +L
Sbjct: 94 LGKLREK-SDLPVIFLTSKADEADEALGLSLGADDYITKPFSQRLLIARIRAILRR 148
>gi|288960015|ref|YP_003450355.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288912323|dbj|BAI73811.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 219
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED ++ R L + L + GY V +G EP+ ++ D+ +P++DG+
Sbjct: 2 RVLVVEDTPELARQLTQRLAREGYAVDGAADGEEGRFLGETEPYDAVILDLGLPKIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T A L+KPF + +L+ V L+
Sbjct: 62 VLRGWRRAGISVPVLILTARGAWTEKVQGIDAGADDYLAKPFSMEELLARVRALIRR 118
>gi|289577955|ref|YP_003476582.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
gi|289527668|gb|ADD02020.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter italicus Ab9]
Length = 223
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QK+L+ ED++ MR L L GYEV+ NG + S++L DI++P++ G
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNNDISIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF +++V V +L
Sbjct: 62 WSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILAR 119
>gi|254787382|ref|YP_003074811.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
gi|237686080|gb|ACR13344.1| signal transduction histidine kinase [Teredinibacter turnerae T7901]
Length = 1547
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 9/128 (7%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP----FSLLLTDIVMP 57
N ++LL ED+ + L G V + NG A D ++ +SL+L D MP
Sbjct: 1261 NGRVLLVEDNPVNQDVARMMLDDVGVVVTTAGNGVEALDALQSAQQWDLYSLVLMDCQMP 1320
Query: 58 EMDGIELARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
EMDG E R E+ + ++ +T A A +SKP + L +
Sbjct: 1321 EMDGYETTRSIRAGKAGEIYKKIPIIAMTANAMKGDKERCFAAGMDDYISKPIDPQVLED 1380
Query: 113 EVNRLLTI 120
+ + L
Sbjct: 1381 RLRKWLPR 1388
Score = 86.7 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56
N+ +LL ED+ +R + + L G V + +GA + ++ ++L D +
Sbjct: 1108 NKSVLLIEDNKSVRELVYRWLDSWGANVFAAEDGAQGLARCQDLKALNNLPDVVLIDQYL 1167
Query: 57 PEMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
P+ G +LA++ ++ DL V+ ++ A L ++KP LV V
Sbjct: 1168 PDQTGCDLAKQMLGIEGCADLPVLILSRIAEGELQKFC-DAGARGYVAKPLTRAGLVESV 1226
Query: 115 NRLLT 119
LL
Sbjct: 1227 KVLLE 1231
>gi|255505528|ref|ZP_05346649.3| DNA-binding response regulator ResD [Bryantella formatexigens DSM
14469]
gi|255267413|gb|EET60618.1| DNA-binding response regulator ResD [Bryantella formatexigens DSM
14469]
Length = 251
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DMR L GY + +GA A D + + L++ DI+MP MDG +L
Sbjct: 30 ILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQYIDLIVADIMMPNMDGYQL 89
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + L V+ +T + KP ++ +LV V LL
Sbjct: 90 TKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPVNVNELVLRVEALLRR 145
>gi|160893062|ref|ZP_02073850.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
gi|156865145|gb|EDO58576.1| hypothetical protein CLOL250_00607 [Clostridium sp. L2-50]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L +L + EV +G A++K++ + ++L DI++P GI
Sbjct: 2 KKVLVVDDEKLIVKGLKFSLEQDDMEVDVAYDGGEAFEKIKNNSYDIVLLDIMIPVYTGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E ++ ++ +T ++KPF++ ++ + +L
Sbjct: 62 EVCQMVRE-FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARIKAILRR 118
>gi|78045027|ref|YP_359462.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
gi|77997142|gb|ABB16041.1| DNA-binding response regulator [Carboxydothermus hydrogenoformans
Z-2901]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD +++ L L Y+ V +G +A + E F L++ D+ +P+ DG
Sbjct: 3 KILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ V+ +T L+KPF +L+ + +L
Sbjct: 63 VLKEIKNRE-DVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRR 118
>gi|119715849|ref|YP_922814.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536510|gb|ABL81127.1| response regulator receiver [Nocardioides sp. JS614]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + + L G+ V + ++GA + + + +++ DI++P M+G +
Sbjct: 2 RVLMVEDEVRLAETVSRGLRAEGFVVDTIHDGAEGLAEAQLRDYDVIVLDIMLPSMNGYD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ +T D+ L+KPF LV + L+
Sbjct: 62 VCRELRKAGVWVPILMLTAKDGEYDEADALDLGADDYLTKPFSFVVLVARLRALVRR 118
>gi|331083762|ref|ZP_08332871.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403187|gb|EGG82747.1| hypothetical protein HMPREF0992_01795 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 224
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 61/118 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L + Y V + +G +A + + + + ++ DI+MP++DGI
Sbjct: 2 RLLLAEDEKALSKALTAILERNNYSVDAVYDGQAALEYLEADNYDGVILDIMMPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T + V + L+KPFH ++L+ + + ++
Sbjct: 62 VLKEIRKKGNLIPVLLLTAKSEVDDKVEGLDAGANDYLAKPFHSKELLARIRAMTRVQ 119
>gi|302670595|ref|YP_003830555.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
gi|302395068|gb|ADL33973.1| two component system response regulator [Butyrivibrio
proteoclasticus B316]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR+ + L K GY VV +G A D ++ SL++ D++MP+ DG
Sbjct: 5 KILVVDDESRMRKLVKDFLVKDGYLVVEAEDGQQALDIFYEDKDISLIILDVMMPKRDGW 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + + + ++ +T A + +SKPF + L V+ +L N
Sbjct: 65 EVCKEIR-TNSKVPIIMLTAKAEERDELLGFELGVDEYISKPFSPKILAARVSAILRRTN 123
>gi|256785613|ref|ZP_05524044.1| transcriptional regulatory protein [Streptomyces lividans TK24]
Length = 221
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L EDDD +R L +L + G+ V + +G +RE+ L++ D+++P +DG E+
Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 61 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114
>gi|148379575|ref|YP_001254116.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|148289059|emb|CAL83149.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
Length = 230
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + + L++ DI+MP+MDGI
Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIN 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|17158720|ref|NP_478231.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17134669|dbj|BAB77227.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ + + L + Y V +G A+ + + ++L + D ++P + G
Sbjct: 2 RVLLVEDEPDLGAAIKRTLTQQKYLVDWVLDGNDAWAYLENQWTQYTLAIFDWMLPGISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL +R L V+ +T + L KPF + +L+ + L +
Sbjct: 62 LELCKRLRYRQSPLPVLMLTAKDRMEDKVTGLDAGADDYLVKPFGMAELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|126172995|ref|YP_001049144.1| two component transcriptional regulator [Shewanella baltica OS155]
gi|153002077|ref|YP_001367758.1| two component transcriptional regulator [Shewanella baltica OS185]
gi|160876795|ref|YP_001556111.1| two component transcriptional regulator [Shewanella baltica OS195]
gi|217974655|ref|YP_002359406.1| winged helix family two component transcriptional regulator
[Shewanella baltica OS223]
gi|304410608|ref|ZP_07392226.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|307304701|ref|ZP_07584451.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|125996200|gb|ABN60275.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS155]
gi|151366695|gb|ABS09695.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS185]
gi|160862317|gb|ABX50851.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS195]
gi|217499790|gb|ACK47983.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS223]
gi|304351092|gb|EFM15492.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS183]
gi|306912103|gb|EFN42527.1| two component transcriptional regulator, winged helix family
[Shewanella baltica BA175]
gi|315268997|gb|ADT95850.1| two component transcriptional regulator, winged helix family
[Shewanella baltica OS678]
Length = 234
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ + IL+ EDD + ++ L GYEV + G A + + EE L+L D+++P
Sbjct: 1 MSVEKHILVVEDDISLAEWISDYLLDHGYEVTVASQGDFALEMIAEEIPDLVLLDVMLPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G ++ + A ++F+T L+KP + L+ + LL
Sbjct: 61 KNGFDVCKEARAFYAG-PILFMTACVEDGDEIRGLDVGADDYLTKPIRPQVLLARIKALL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|319744078|gb|EFV96455.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
13813]
Length = 223
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG +
Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ ++ +T + + + KP L++L + LL N
Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQLQELALRIKALLRRAN 121
>gi|323345601|ref|ZP_08085824.1| DNA-binding response regulator [Prevotella oralis ATCC 33269]
gi|323093715|gb|EFZ36293.1| DNA-binding response regulator [Prevotella oralis ATCC 33269]
Length = 232
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L Y V C +G Y + + F + + D++MP+ DG
Sbjct: 6 KILLCEDDENLGMLLREYLQAKDYTAVLCPDGEVGYKEFLKSKFDICVLDVMMPKKDGFT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ + + ++ ++F+T + ++KPF + +LV + +L
Sbjct: 66 LAQEIRQANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELVLRIEAILRR 122
>gi|297193586|ref|ZP_06910984.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151835|gb|EFH31368.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 184
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ L L K G+EV G D+ L+L D+++P + G E+
Sbjct: 2 LVVEDEESFSDALSYMLRKEGFEVAVATTGPDGLDEFERNGADLVLLDLMLPGLPGTEVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ ++ V+ +T + ++KPF R+LV + +L +
Sbjct: 62 RQLRGR-SNVPVIMVTAKDSEIDKVVGLEIGADDYVTKPFSSRELVARIRAVLRRR 116
>gi|295426129|ref|ZP_06818796.1| response regulator [Lactobacillus amylolyticus DSM 11664]
gi|295064165|gb|EFG55106.1| response regulator [Lactobacillus amylolyticus DSM 11664]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ DI+MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLITTPDIALMILDIMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ + +SKPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSDIPIIVVSAKTSDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|289422314|ref|ZP_06424164.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
gi|289157259|gb|EFD05874.1| regulatory protein VanR [Peptostreptococcus anaerobius 653-L]
Length = 237
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +LL ED+ D+ + L GYEV+ +NG + + + L + D++MP M
Sbjct: 1 MKVYTVLLVEDEKDIADAVEVYLRNQGYEVIKASNGQEGLEMIEKNEVHLAIVDLMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG + + E D V+ ++ + ++KPF +L+ VN L
Sbjct: 61 DGTTMIMKLREKY-DFPVIILSAKSEEVDKIMGLNIGADDYVNKPFKPLELLARVNSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|265752927|ref|ZP_06088496.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263236113|gb|EEZ21608.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1408
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|124009093|ref|ZP_01693776.1| response regulator DrrA [Microscilla marina ATCC 23134]
gi|123985307|gb|EAY25227.1| response regulator DrrA [Microscilla marina ATCC 23134]
Length = 232
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ D+ L L KAGYEV + NNG A + L+L DI+MP+MDG+E
Sbjct: 8 KVLVVDDEPDIVELLQYNLEKAGYEVKTANNGKEAIKVAKTFLPQLILMDIMMPKMDGVE 67
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E+ D ++++T + ++KP R L++ + L +
Sbjct: 68 AGRQLREMTEIADTYIIYLTARVEEYSELAAFDVGADDYITKPIRPRALLSRIAALFRRE 127
>gi|206969651|ref|ZP_03230605.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228923426|ref|ZP_04086712.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228954942|ref|ZP_04116960.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|229072175|ref|ZP_04205383.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
gi|229081927|ref|ZP_04214419.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
gi|229147236|ref|ZP_04275593.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
gi|229180989|ref|ZP_04308324.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
gi|206735339|gb|EDZ52507.1| DNA-binding response regulator [Bacillus cereus AH1134]
gi|228602546|gb|EEK60032.1| hypothetical protein bcere0005_43330 [Bacillus cereus 172560W]
gi|228636245|gb|EEK92718.1| hypothetical protein bcere0012_43710 [Bacillus cereus BDRD-ST24]
gi|228701515|gb|EEL54009.1| hypothetical protein bcere0023_45550 [Bacillus cereus Rock4-2]
gi|228710913|gb|EEL62880.1| hypothetical protein bcere0025_43400 [Bacillus cereus F65185]
gi|228804763|gb|EEM51364.1| hypothetical protein bthur0006_43080 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228836211|gb|EEM81566.1| hypothetical protein bthur0011_44030 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G +E + L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYDLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|167769067|ref|ZP_02441120.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
17241]
gi|167668707|gb|EDS12837.1| hypothetical protein ANACOL_00390 [Anaerotruncus colihominis DSM
17241]
Length = 234
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y ++ NG SA + ++L D+ +P+M
Sbjct: 1 MNKPLILVVEDDVPVRNLITTTLKAHDYRFLTAANGESAILEASSHNPEIILLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DGIE+ R+ +L ++ I+ + ++ L+KPF + +L+ +
Sbjct: 61 DGIEVIRKVR-TWSNLPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLR 115
>gi|116071491|ref|ZP_01468759.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
gi|116065114|gb|EAU70872.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. BL107]
Length = 259
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L +G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDQDMRDLVSGHLEHSGFDVQRADDGIKGQALALQYIPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L + LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRIKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|2073506|emb|CAA72451.1| transcriptional regulatory protein [Rickettsia prowazekii]
Length = 146
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + L + L K + V + N+ A + ++ + L++ D+++P + G++
Sbjct: 7 HILIVDDDSRILALLKQFLNKNNFLVSTANSVIEAKNLLKTSNYDLIILDVMLPRITGLD 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
A + ++ ++ +T + + ++KPF R+L+ +N L+ N
Sbjct: 67 FATTIRDAGNNIPIVMLTALSEANDRVKGLEAGASDYITKPFEPRELLLRINNLINNYN 125
>gi|92115368|ref|YP_575296.1| two component transcriptional regulator [Chromohalobacter
salexigens DSM 3043]
gi|91798458|gb|ABE60597.1| two component transcriptional regulator, winged helix family
[Chromohalobacter salexigens DSM 3043]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L+ +D+ +R + AL A Y V+ +N +A+ V ++ LLL D +MP
Sbjct: 1 MTAKTVLIVDDEASIREMIAVALEMADYRVLEADNAQAAHAMVVDDQPDLLLLDWMMPGT 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIELARR +L ++ +T + ++KPF R+LV + +
Sbjct: 61 SGIELARRLKRDTATAELPIILLTAKSEEDNKIQGLEAGADDYITKPFSPRELVARLKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|189500624|ref|YP_001960094.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides BS1]
gi|189496065|gb|ACE04613.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides BS1]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + L L KA Y+ V +G A + + L+L D+++P +DG E+
Sbjct: 6 ILVVEDDRNLAKLLKYNLEKASYKCVLAESGEEALRLLADRAVDLVLLDVMLPGIDGFEV 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ +L +L ++ +T + KPF R+L + +L
Sbjct: 66 CRKLRQQQLHRELPIVLLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123
>gi|22537931|ref|NP_688782.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|25011874|ref|NP_736269.1| hypothetical protein gbs1835 [Streptococcus agalactiae NEM316]
gi|76798833|ref|ZP_00781044.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
18RS21]
gi|77409021|ref|ZP_00785740.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
gi|61222656|sp|P0A4H9|DLTR_STRA3 RecName: Full=Transcriptional regulatory protein dltR
gi|61222657|sp|P0A4I0|DLTR_STRA5 RecName: Full=Transcriptional regulatory protein dltR
gi|22534830|gb|AAN00655.1|AE014273_2 DNA-binding response regulator [Streptococcus agalactiae 2603V/R]
gi|18076414|emb|CAC83083.1| putative response regulator, DltR [Streptococcus agalactiae]
gi|24413415|emb|CAD47494.1| Unknown [Streptococcus agalactiae NEM316]
gi|76585807|gb|EAO62354.1| Transcriptional regulatory protein dltR [Streptococcus agalactiae
18RS21]
gi|77172362|gb|EAO75512.1| DNA-binding response regulator [Streptococcus agalactiae COH1]
Length = 224
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + L GY V +G + + + L+L DI++P+ G+
Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLAFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E + ++F+T + + ++KPF +L+ + L +
Sbjct: 62 VLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIR--LRTR 117
>gi|212692221|ref|ZP_03300349.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855]
gi|212665098|gb|EEB25670.1| hypothetical protein BACDOR_01717 [Bacteroides dorei DSM 17855]
Length = 1408
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|28211768|ref|NP_782712.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28204210|gb|AAO36649.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 261
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+D++R + L G +V+ +G A + EE L++ DI+MP MDGI+
Sbjct: 9 VLVVDDEDEIRDAIGIYLKNEGIKVLKAKDGIEALMVLEEEEVHLIIMDIMMPRMDGIKA 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ + ++KPF+ +L+ V L
Sbjct: 69 TFKIRESKK-IPIIMLSAKSEDMDKILGLNIGADDYVTKPFNPLELIARVKSQLRR 123
>gi|113477574|ref|YP_723635.1| response regulator receiver sensor signal transduction histidine
kinase [Trichodesmium erythraeum IMS101]
gi|110168622|gb|ABG53162.1| response regulator receiver sensor signal transduction histidine
kinase [Trichodesmium erythraeum IMS101]
Length = 440
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L +AL A +EV +G A + + SL+L D++MP +DG E
Sbjct: 7 ILVVDDTPANLAVLSEALSDADFEVAIATDGELAITQAKLSLPSLILLDVMMPGIDGFET 66
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + ++ ++F+T + + ++KPF +L+ V L + +
Sbjct: 67 CRRFKACNITKNIPIIFMTALSDCIDKVKGLSLGAVDYVTKPFQEAELIARVKTQLKLYH 126
>gi|332298252|ref|YP_004440174.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
gi|332181355|gb|AEE17043.1| two component transcriptional regulator, winged helix family
[Treponema brennaborense DSM 12168]
Length = 244
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + L + L K Y+V + +G SA + + ++ DI+MP +DG+
Sbjct: 2 RLLLAEDEKRLSCALCEILSKHTYDVDAVYDGKSALAYIASGVYDAVILDIMMPGLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R ++ V+ +T +A ++KPF +L+ + L +
Sbjct: 62 VLRELRAAKNNVPVLLLTAKDEIADKVSGLDHGADDYMTKPFSTDELLARIRALTRRR 119
>gi|299147243|ref|ZP_07040308.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298514521|gb|EFI38405.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1326
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +AL ++V+ NG A + + + ++++DI+MPEMDG+E
Sbjct: 1080 TVLLVEDNIELLNLTREALSVW-FKVIRAGNGKEALEILAHQGVDVIVSDIMMPEMDGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ +T + + L KPF ++ L ++ LL ++
Sbjct: 1139 LCNHVKSDMAYSHIPVVLLTAKTTLESKVEGLESGADVYLEKPFSIKQLHKQIENLLKLR 1198
>gi|256370539|ref|YP_003108050.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
microti CCM 4915]
gi|256000702|gb|ACU49101.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
microti CCM 4915]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEGEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|237720291|ref|ZP_04550772.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229450042|gb|EEO55833.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1326
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ ++ +AL ++V+ NG A + + + ++++DI+MPEMDG+E
Sbjct: 1080 TVLLVEDNIELLNLTREALSVW-FKVIRAGNGKEALEILAHQGVDVIVSDIMMPEMDGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ +T + + L KPF ++ L ++ LL ++
Sbjct: 1139 LCNHVKSDMAYSHIPVVLLTAKTTLESKVEGLESGADVYLEKPFSIKQLHKQIENLLKLR 1198
>gi|225575152|ref|ZP_03783762.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
10507]
gi|225037619|gb|EEG47865.1| hypothetical protein RUMHYD_03241 [Blautia hydrogenotrophica DSM
10507]
Length = 222
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ M+ +++ + + G+ + ++G A ++ P L++ DI+MP +DG +
Sbjct: 4 ILIVEDEKKMQEIIVEYMQRGGHICFTADDGIDALVVLKSNPMDLMILDIMMPNLDGFSV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ A E+ +L ++ +T + ++KPF + L+ + N LL +
Sbjct: 64 CKIAREM-SNLPIIMLTAKGSEDDKLKGYDLGADDYMTKPFSPKVLLAKANALLRRSS 120
>gi|317474353|ref|ZP_07933627.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316909034|gb|EFV30714.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1320
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 4/120 (3%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ +M+ F+ K L Y+V +G A ++E ++++DI+MP MDG+EL
Sbjct: 1067 LIVEDNLEMQDFISKRLMDK-YDVYRAADGLEALKVLKEFDIDIVVSDIMMPNMDGMELL 1125
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-TIKN 122
+ E + V+ ++ + + + + KPF L L+ ++ LL K+
Sbjct: 1126 KNIKETVEYSHIPVILLSAKSDLESRINGLELGADAYIEKPFSLEYLMAQIQNLLMNRKS 1185
>gi|319794725|ref|YP_004156365.1| two component heavy metal response transcriptional regulator winged
helix family [Variovorax paradoxus EPS]
gi|315597188|gb|ADU38254.1| two component heavy metal response transcriptional regulator,
winged helix family [Variovorax paradoxus EPS]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + +L K L + GY V +G E ++L+L D+++P +DG
Sbjct: 2 RILVIEDEPKLGDYLKKGLEENGYVVDIARDGIEGRYLATEGEYALVLLDVMLPGIDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ +T V L KPF +L+ V LL
Sbjct: 62 VLQAIR-RTKNVPVLVLTARDKVEDRVQGLQQGADDYLVKPFSFSELLARVQALLRR 117
>gi|237717798|ref|ZP_04548279.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229452897|gb|EEO58688.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1321
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187
Query: 121 K 121
+
Sbjct: 1188 R 1188
>gi|198277651|ref|ZP_03210182.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
gi|198269348|gb|EDY93618.1| hypothetical protein BACPLE_03874 [Bacteroides plebeius DSM 17135]
Length = 1021
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ D+R ++ L Y V+ NG + + +++ D++MP MDGIE
Sbjct: 772 VLVIDDNQDVRDYVKMLLQDK-YTVIEAVNGQEGIRQAMKYVPDVVVCDVMMPVMDGIEC 830
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + V+ +T +A L+KPF+ + L+ + L+ +
Sbjct: 831 CKRLKSELQTSHIPVLMLTAYAMDEQRIQGYDSGADSYLTKPFNAKLLLARIRNLIDNR 889
>gi|189218173|ref|YP_001938815.1| phosphate regulon transcriptional regulatory protein phoB
[Methylacidiphilum infernorum V4]
gi|189185031|gb|ACD82216.1| Phosphate regulon transcriptional regulatory protein phoB
[Methylacidiphilum infernorum V4]
Length = 258
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 60/123 (48%), Gaps = 4/123 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ ED++D+ + L G+E + G A R+E L++ D+++PE G
Sbjct: 31 KKKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSG 90
Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+++ + + DPD + ++ +T + + ++KPF R+L+ + +L
Sbjct: 91 LDVCKYLKK-DPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSIL 149
Query: 119 TIK 121
+
Sbjct: 150 RRR 152
>gi|218439941|ref|YP_002378270.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
gi|218172669|gb|ACK71402.1| response regulator receiver protein [Cyanothece sp. PCC 7424]
Length = 124
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +K+LL ED R + L + G+ V +G A + V++ L++ DIVMP M+
Sbjct: 1 MMRKVLLVEDSQAQREMISTLLRENGWNVSIACDGVEALEFVQQSSPDLVVLDIVMPRMN 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR ++ V+ + ++KPF +L+ + +LL
Sbjct: 61 GYEVCRRLKSDPKTMNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPIELIGTIKQLL 120
Query: 119 TIK 121
+
Sbjct: 121 RKE 123
>gi|121605101|ref|YP_982430.1| two component transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120594070|gb|ABM37509.1| two component transcriptional regulator, winged helix family
[Polaromonas naphthalenivorans CJ2]
Length = 242
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 50/125 (40%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M ++L+ ED+ + + L G+ V + +A ++ ++L D ++P
Sbjct: 1 MKHLPRVLIVEDEPAIAELIQVNLKHGGFIPVLAYDSVAAQRELDTMLPDVILLDWMLPG 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+ LAR E + ++ +T ++KPF ++L+ +
Sbjct: 61 QSGLSLARLWRKQERTRSIPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRA 120
Query: 117 LLTIK 121
+L +
Sbjct: 121 VLRRR 125
>gi|325102980|ref|YP_004272634.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
gi|324971828|gb|ADY50812.1| two component transcriptional regulator, winged helix family
[Pedobacter saltans DSM 12145]
Length = 234
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q+ILL ED++ + + L G+ V + +G A +EE F+L++ D+++PE+DG
Sbjct: 4 KQRILLMEDEEHLLEAIKLNLEMEGFFVRAVTDGKKALKVFKEEKFNLIILDVMVPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++A + ++ +MF+T L+KPF+L +L+ VN L+
Sbjct: 64 FQVAETIRLENSEVPIMFLTAKNTSEDRITGLKKGADDYLTKPFNLEELILRVNNLIKR 122
>gi|260642598|ref|ZP_05416521.2| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260621410|gb|EEX44281.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1310
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D+ FL K+LG+ VV ++GA A +R ++++D++MP M+G E
Sbjct: 1059 TVLVVDDNPDLTDFLKKSLGEYFKRVVIASDGAEALQLIRSHTPDIIVSDVMMPRMNGYE 1118
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E + ++ +T L+KPF + L+ + L +
Sbjct: 1119 LCKSIKEDITISHIPIILLTARDDQQSQLSGYKNGADAYLTKPFEIEMLMEIICNRLKNR 1178
>gi|322419999|ref|YP_004199222.1| Fis family two component sigma54 specific transcriptional regulator
[Geobacter sp. M18]
gi|320126386|gb|ADW13946.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 457
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ MR FL L GY V N A + E+ + ++++D+ MP +
Sbjct: 1 MRARILVVDDELSMREFLAILLDGEGYLVDQAENAEHALSCMAEQHYEMVISDVSMPGLG 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIEL R PD V+ IT F ++ + KPF + ++ V + L
Sbjct: 61 GIELLTRIKAESPDTAVLMITAFTTAEQAVEAMKLGAYDYIGKPFKVEEVKVLVRKALEK 120
Query: 121 KN 122
++
Sbjct: 121 QS 122
>gi|192359014|ref|YP_001981290.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
gi|190685179|gb|ACE82857.1| DNA-binding response regulator [Cellvibrio japonicus Ueda107]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 45/117 (38%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +R + + Y + +G E + L + D+ +P MDG
Sbjct: 2 RLLVVEDEQSLREQIASLVAAEKYACDTAADGRDGLFLGCEYDYDLAIIDLGLPLMDGTT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + ++ +T L+KPFH +L ++ LL
Sbjct: 62 VIRELRAKGRNFPILILTARGNWQDKVQGLEAGADDYLTKPFHPEELKARIHALLRR 118
>gi|168206898|ref|ZP_02632903.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
JGS1987]
gi|170661686|gb|EDT14369.1| DNA-binding response regulator KdpE [Clostridium perfringens E str.
JGS1987]
Length = 237
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F+ L Y+ + NG+ + +++ D+ +P+MD
Sbjct: 1 MKPSILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ E + ++ ++ + ++ L+KPF + +L+ + +
Sbjct: 61 GIEIIKKVRE-WSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRK 119
Query: 121 KN 122
N
Sbjct: 120 MN 121
>gi|83717906|ref|YP_439918.1| DNA-binding response regulator TctD [Burkholderia thailandensis
E264]
gi|83651731|gb|ABC35795.1| DNA-binding response regulator TctD [Burkholderia thailandensis
E264]
Length = 267
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + + L AL A + V +G +A + + ++L++ D+ +P++DG+E
Sbjct: 46 RVLLVEDNPILAQSLADALSSARFAVDHMADGEAADHVLHTQDYALVILDLGLPKLDGLE 105
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T +V L+KPF L +L L+
Sbjct: 106 VLRRLRARRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFELTELEARARALIRR 162
>gi|301307690|ref|ZP_07213647.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 20_3]
gi|300834364|gb|EFK64977.1| putative two-component system sensor histidine kinase/response
[Bacteroides sp. 20_3]
Length = 1369
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D R F+ +L Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1181 LCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1240
>gi|262409757|ref|ZP_06086294.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|262352374|gb|EEZ01477.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 1321
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187
Query: 121 K 121
+
Sbjct: 1188 R 1188
>gi|253568240|ref|ZP_04845651.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|251842313|gb|EES70393.1| two-component system response regulator [Bacteroides sp. 1_1_6]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + ++L K Y V + + SA K+ + + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLRELIQRSLEKERYVVETAGDFNSALYKIEDYDYDCVLLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ I+ ++ L KPFHL +L + ++
Sbjct: 62 LLERLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLAELNARIKSVIRR 118
>gi|229588672|ref|YP_002870791.1| putative two-component system response regulator [Pseudomonas
fluorescens SBW25]
gi|229360538|emb|CAY47395.1| putative two-component system, response regulator [Pseudomonas
fluorescens SBW25]
Length = 465
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L ALG+ +V NG A + +E L+++D MP MD
Sbjct: 1 MTHNILVVDDEPKLCDLLASALGQNNVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L P + V+ +T ++ V S ++KPF + +L V + L
Sbjct: 61 GPALLAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQF 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|170025129|ref|YP_001721634.1| two component, sigma54 specific, Fis family transcriptional
regulator [Yersinia pseudotuberculosis YPIII]
gi|186894605|ref|YP_001871717.1| two component, sigma54 specific, Fis family transcriptional
regulator [Yersinia pseudotuberculosis PB1/+]
gi|169751663|gb|ACA69181.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Yersinia pseudotuberculosis YPIII]
gi|186697631|gb|ACC88260.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Yersinia pseudotuberculosis PB1/+]
Length = 454
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 5 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 65 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 124
Query: 122 N 122
+
Sbjct: 125 H 125
>gi|51595549|ref|YP_069740.1| transcriptional regulatory protein hydG [Yersinia
pseudotuberculosis IP 32953]
gi|51588831|emb|CAH20445.1| transcriptional regulatory protein hydG [Yersinia
pseudotuberculosis IP 32953]
Length = 454
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 5 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 65 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 124
Query: 122 N 122
+
Sbjct: 125 H 125
>gi|95928935|ref|ZP_01311680.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
gi|95134836|gb|EAT16490.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfuromonas acetoxidans DSM 684]
Length = 462
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ Q++LL ++++ + R + L +GY+V S A + E + L+++DI MP
Sbjct: 1 MSGGQRVLLIDNEEGLCRMMEAVLKDSGYQVKSYTRSFEAVEDFEAETYDLVISDIKMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ ++ D + V+ IT +A V + + +L+KPF +L+ V L
Sbjct: 61 MDGLEVLQKIRSKDQRVPVIMITAYATVETSIQALRKGAYDMLTKPFEPEELLYRVKNAL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|323704302|ref|ZP_08115881.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
gi|323536368|gb|EGB26140.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacterium xylanolyticum LX-11]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L L K YEV+ NG + ++++ L++ D+++P+ G +
Sbjct: 3 KILVCDDERSILNMLKMVLEKEKYEVICAENGKDVIEVLKKQIPDLIILDVMLPDESGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ L + ++ +T + ++KPF R+L+ V LL
Sbjct: 63 ILKKIVPLYK-VPIIMLTAKNDIVDKVIGLEFGADDYVTKPFDTRELIARVKALLRR 118
>gi|320531513|ref|ZP_08032466.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320136270|gb|EFW28265.1| response regulator receiver domain protein [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 219
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 53/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + FL K L AG+ + G A +E F L++ D+ +P++DG E+
Sbjct: 4 ILIVEDEPRIVAFLTKGLKAAGFTTHTTAAGRQAVALAVQESFDLIILDVGLPDIDGFEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + V+ +T ++VA + KPF +L+ + L
Sbjct: 64 LQQLRGQGVGVPVIMLTARSSVADRVAGLEGGADDYMPKPFSFEELLARIRVRLR 118
>gi|299145134|ref|ZP_07038202.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298515625|gb|EFI39506.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1314
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGY--EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ DM FL + GY ++ +G A VR ++++D++MP M+G
Sbjct: 1058 TILVVDDNPDMTDFLKRTFE--GYFKRIIIAGDGVEALQLVRSHVPDIIVSDVMMPRMNG 1115
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + E + V+ +T LSKPF + L+ + L
Sbjct: 1116 YELCKTIKEDIAISHIPVILLTAKDDKQSLISGYKNGADGYLSKPFEVEMLMELIRNRLK 1175
Query: 120 IK 121
+
Sbjct: 1176 NR 1177
>gi|295085367|emb|CBK66890.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1263
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L + Y + +C NG A +RE L+++DI+MPEM G
Sbjct: 999 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1057
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T + ++KPF + L + LL
Sbjct: 1058 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1117
Query: 121 K 121
+
Sbjct: 1118 R 1118
>gi|237711505|ref|ZP_04541986.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229454200|gb|EEO59921.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1408
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRDYIRSILTEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|167755010|ref|ZP_02427137.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402]
gi|237735265|ref|ZP_04565746.1| two-component system transcriptional regulator [Mollicutes
bacterium D7]
gi|167705060|gb|EDS19639.1| hypothetical protein CLORAM_00514 [Clostridium ramosum DSM 1402]
gi|229381010|gb|EEO31101.1| two-component system transcriptional regulator [Coprobacillus sp.
D7]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + R+ + L Y V+ +G A + L++ D++MP+MDG E
Sbjct: 3 HILVVDDDKNTRQLIKAVLETENYIVIGATDGEDALKVLDRSHIDLVILDVMMPKMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L ++ ++ A ++KPF +L+ V LL
Sbjct: 63 FTEILRRVQNELPILMVSAKQLPADRNKGFIVGTDDFMTKPFDEEELLLRVKALLRR 119
>gi|161505495|ref|YP_001572607.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160866842|gb|ABX23465.1| hypothetical protein SARI_03654 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 469
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG ++ NG A + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCIAFENGNEALAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|46200862|ref|ZP_00207874.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Magnetospirillum magnetotacticum MS-1]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ I L +DD ++ + AL G++V + +GA A + +P L + DI MP MD
Sbjct: 1 MSHTIALVDDDRNILTSVSMALEAEGFKVRTYTDGAEALRGLTNQPADLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF + L+ + L+
Sbjct: 61 GMELLQRLRKQ-SAIPVIFLTSKDDEIDELLGLRMGADDYIKKPFSQKLLIERIRTLIRR 119
>gi|319951942|ref|YP_004163209.1| two component, sigma54 specific, transcriptional regulator
[Cellulophaga algicola DSM 14237]
gi|319420602|gb|ADV47711.1| putative two component, sigma54 specific, transcriptional regulator
[Cellulophaga algicola DSM 14237]
Length = 387
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +IL+ ED+ +RR L+K L + Y V +G + V++E + L+L DI MP+
Sbjct: 1 MS-RILVIEDEAAIRRVLVKILSEESDTYTVEEAEDGLKGLEAVKKEDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ A ++ P++ + I+G + ++ +SKP L L+ V L
Sbjct: 60 MDGVEVLEAAKKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119
Query: 119 TIK 121
K
Sbjct: 120 DRK 122
>gi|311741763|ref|ZP_07715574.1| response regulator [Aeromicrobium marinum DSM 15272]
gi|311314769|gb|EFQ84675.1| response regulator [Aeromicrobium marinum DSM 15272]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED+ L L K G++V G A + ++L D+++P +
Sbjct: 1 MT-RVLVVEDESSYSEALSYVLRKEGFDVAIAETGPDALLEFDRAGADIVLLDLMLPGLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + + ++ ++ ++KP+ R+LV + +L
Sbjct: 60 GTEVCRQLRQ-TSSVPIIMVSAKDTEVDKVVGLELGADDYVTKPYSPRELVARIRAVLRR 118
>gi|299537379|ref|ZP_07050677.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
gi|298727171|gb|EFI67748.1| two-component response regulator [Lysinibacillus fusiformis ZC1]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ DMR + L + E + +G AYD + E L+L D++MP D
Sbjct: 1 MT-TVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDVIVRENIDLVLLDVMMPHED 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++F+T A + KPF +LV + +L
Sbjct: 60 GFVVCQSIRAM-SNVPIIFLTARDANEDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRR 118
>gi|257438018|ref|ZP_05613773.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
gi|257199678|gb|EEU97962.1| DNA-binding response regulator VicR [Faecalibacterium prausnitzii
A2-165]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAEALEVLVKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|254423774|ref|ZP_05037492.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196191263|gb|EDX86227.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 636
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD+ + L L Y V +G + + + L++ D ++P++ G+
Sbjct: 2 RVLLVDDDNALASLLTSQLAAHNYIVDHVADGETGWAYASTFDYDLVVLDWMLPQLSGVH 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + ++ +T + + KPF + +L+ + LL
Sbjct: 62 LCQRLRRQGCGVPILLLTVKNEQRNKIEGLEAGADDYVVKPFDMDELLARIRVLLRR 118
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%), Gaps = 6/119 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +DD + +++ L +E+ N + + L++ D+ MP+++G E
Sbjct: 510 KIMIVDDDAHYLKQVVQLLHPWNFEITPLTNPQRFWTLFNQVLPDLVVFDVEMPQINGFE 569
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH----LRDLVNEVNR 116
LAR L ++F++ A + A ++KP H L+N +N+
Sbjct: 570 LARVLRSHTKWQHLPIVFLSVHGDAAKQEQAFAIGADDYITKPVHGKAFATRLLNRLNQ 628
>gi|163816645|ref|ZP_02208008.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
gi|158447902|gb|EDP24897.1| hypothetical protein COPEUT_02835 [Coprococcus eutactus ATCC 27759]
Length = 235
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + + L +L + EV + +G A +K++ + ++L DI++P GI
Sbjct: 9 KKVLVVDDEKLIVKGLKFSLEQDDMEVDTAYDGGEAVEKIKNNDYDIVLLDIMIPVYTGI 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + E ++ ++ +T ++KPF++ ++ + +L
Sbjct: 69 EVCQMVRE-FSNVPIIMLTAKGEDMDKIMGLEYGADDYITKPFNILEVKARMKAILRR 125
>gi|148654863|ref|YP_001275068.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus sp. RS-1]
gi|148566973|gb|ABQ89118.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus sp. RS-1]
Length = 331
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+A+D+ MR +I+ + GY ++ NG A E+ L+L D+ MP++D
Sbjct: 1 MAAKILIADDNQAMREAIIRFVEAEGYTALAARNGREALALALEKQPDLVLLDVTMPDID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + + +T + L+KPF R L + L
Sbjct: 61 GFEVCRRLKNDPRTALIPITMLTVLDSPDHRRYGIEAGADDFLTKPFDERLLRARIQSQL 120
Query: 119 TIK 121
K
Sbjct: 121 RTK 123
>gi|78046368|ref|YP_362543.1| two-component system response regulator KdpE [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78034798|emb|CAJ22443.1| two-component system response regulator KdpE [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 238
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ G + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 126
>gi|104774697|ref|YP_619677.1| two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514824|ref|YP_813730.1| DNA-binding response regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423778|emb|CAI98784.1| Two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116094139|gb|ABJ59292.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus delbrueckii subsp. bulgaricus ATCC
BAA-365]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ NG A K+ P +L++ D++MP M GI
Sbjct: 2 KILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTKLSTTPDIALMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 DVVKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|300931183|ref|ZP_07146528.1| putative transcriptional activator protein Irlr [Escherichia coli
MS 187-1]
gi|300460990|gb|EFK24483.1| putative transcriptional activator protein Irlr [Escherichia coli
MS 187-1]
gi|323948330|gb|EGB44317.1| heavy metal response regulator [Escherichia coli H120]
Length = 290
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|238061758|ref|ZP_04606467.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
gi|237883569|gb|EEP72397.1| two-component system response regulator receiver [Micromonospora
sp. ATCC 39149]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 46/116 (39%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L + G+ V +G + R + DI +P + G E+
Sbjct: 11 VLVVEDEPAIADLVRLYLTRDGFGVHLERDGVAGLAAARRLRPVACVLDIALPGLAGTEI 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E V+F+T ++KPF R+LV V +L
Sbjct: 71 CRRLREAGDWTPVLFLTARDDEVDRIIGLELGADDYVTKPFSPRELVARVRAVLRR 126
>gi|239623923|ref|ZP_04666954.1| sensor histidine kinase [Clostridiales bacterium 1_7_47_FAA]
gi|239521954|gb|EEQ61820.1| sensor histidine kinase [Clostridiales bacterium 1_7_47FAA]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED++DMR L L K GY V S +GA A + L++ D+ +P MDG+E
Sbjct: 2 RLLIIEDEEDMREALCYGLRKLGYAVDSSGDGAEAAQLCYINHYDLVVLDLNLPGMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + KV+ ++ + + + L+KPFH ++L + LL
Sbjct: 62 VLRHIQSQENPTKVLILSARSELTDKIAGLDGGASDYLTKPFHFQELEARIRMLLRR 118
>gi|126696581|ref|YP_001091467.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. MIT 9301]
gi|112818638|gb|ABI23442.1| two-component response regulator [Prochlorococcus marinus str. MIT
9301]
gi|126543624|gb|ABO17866.1| two-component response regulator, phosphate [Prochlorococcus
marinus str. MIT 9301]
Length = 242
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMD 60
+ILL EDD +R + + L G+ V S +G SA D + + L++ D+++P ++
Sbjct: 13 RILLVEDDKSIRLTVSETLSSEGFRVSSFKDGLSALDFINNDIKKDVDLIILDLMLPGLN 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R+ + ++ ++ + L+KPF L +L+ L+
Sbjct: 73 GLELCRKIRNDEDYTPILILSAKDNESDRVLGLEVGADDYLTKPFGLNELIARSRALIRR 132
>gi|86132873|ref|ZP_01051464.1| two component, sigma54 specific, transcriptional regulator
[Dokdonia donghaensis MED134]
gi|85816579|gb|EAQ37766.1| two component, sigma54 specific, transcriptional regulator
[Dokdonia donghaensis MED134]
Length = 387
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ ED+ +RR L K L + Y+V +G +K+REE + L+L DI MP+MDG
Sbjct: 3 KILIIEDEAAIRRVLTKILSEESKDYQVEEAGDGLEGINKIREEDYDLVLCDIKMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ A +L P++ ++ I+G + ++ +SKP L L+N V L K
Sbjct: 63 VEVLEAARKLKPEVPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNALDRK 122
>gi|299538439|ref|ZP_07051722.1| two component transcriptional regulator, winged helix family
protein [Lysinibacillus fusiformis ZC1]
gi|298726026|gb|EFI66618.1| two component transcriptional regulator, winged helix family
protein [Lysinibacillus fusiformis ZC1]
Length = 239
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +L+ ED++D+ + L ++ G A ++E ++ D+ +P+ DG
Sbjct: 5 NITVLIVEDENDIANIIRDYLSVNQFDSHIVRTGHEAIHYLQESKPDFIILDLSLPDCDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE+ R+ E + ++ ++ ++ + ++KPF L +LV +N L +
Sbjct: 65 IEICRKIRE-NSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQ 123
Query: 122 N 122
+
Sbjct: 124 D 124
>gi|228991507|ref|ZP_04151455.1| Uncharacterized sensory transduction protein ykoG [Bacillus
pseudomycoides DSM 12442]
gi|229008403|ref|ZP_04165865.1| Uncharacterized sensory transduction protein ykoG [Bacillus
mycoides Rock1-4]
gi|228752861|gb|EEM02428.1| Uncharacterized sensory transduction protein ykoG [Bacillus
mycoides Rock1-4]
gi|228768231|gb|EEM16846.1| Uncharacterized sensory transduction protein ykoG [Bacillus
pseudomycoides DSM 12442]
Length = 224
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED++ + FL L GY V +G + E+ + ++L D+++P ++GI
Sbjct: 2 HHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR + ++ +T ++ L KPF + +L+ + + +
Sbjct: 62 EVCRRLRA-TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRRE 119
>gi|163791203|ref|ZP_02185620.1| DNA-binding response regulator [Carnobacterium sp. AT7]
gi|159873534|gb|EDP67621.1| DNA-binding response regulator [Carnobacterium sp. AT7]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYEV NG A K++ + L++ D++MP MDGI
Sbjct: 2 KILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + L ++ ++ ++KPF+ +++ + LL N
Sbjct: 62 QVVKEVRKEL-QLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSN 120
>gi|119490634|ref|ZP_01623039.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
8106]
gi|119453799|gb|EAW34956.1| GGDEF/response regulator receiver domain protein [Lyngbya sp. PCC
8106]
Length = 329
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + L L + GYEV +G A ++ + L+L D++MP+M+G+E+
Sbjct: 10 VLVVDDITRNLQVLADMLEQVGYEVTFATDGQQALERAKVAEPDLILLDLMMPKMNGLEV 69
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E ++ V+F+T ++ ++KPF+ +L+ V L +K
Sbjct: 70 CQKLKNDEKLCEIPVIFLTASEEKEHLLEAFKQGAVDYITKPFYAPELLARVRVHLELK 128
>gi|74316922|ref|YP_314662.1| two component Fis family transcriptional regulator [Thiobacillus
denitrificans ATCC 25259]
gi|74056417|gb|AAZ96857.1| Two Component Transcriptional Regulator, Fis family [Thiobacillus
denitrificans ATCC 25259]
Length = 454
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 58/113 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D +RR L L AG+E +G A + E F L++TD+ M M G++
Sbjct: 2 RILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGVD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L R L+P L V+ IT + ++ D+ L+KPF +D++ ++
Sbjct: 62 LLREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILEKIRA 114
>gi|283782276|ref|YP_003373031.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
gi|283440729|gb|ADB19171.1| PAS/PAC sensor hybrid histidine kinase [Pirellula staleyi DSM 6068]
Length = 675
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPE 58
+IL+A+D D +R L + L +AG +V NG A + PF+L+L D+ MPE
Sbjct: 535 RILVADDGIDNQRLLRQILTRAGADVTVAENGLEAVRAWQAANLAGCPFALILMDMQMPE 594
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN-RL 117
+DG + RR EL + ++ +T A L+KPF + L+ + RL
Sbjct: 595 LDGYQATRRLRELGATIPIIALTAHAMTGDRDLCLQAGCDDYLTKPFERKRLLETLRKRL 654
Query: 118 LT 119
L
Sbjct: 655 LE 656
>gi|227894008|ref|ZP_04011813.1| response regulator [Lactobacillus ultunensis DSM 16047]
gi|227864209|gb|EEJ71630.1| response regulator [Lactobacillus ultunensis DSM 16047]
Length = 239
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ D++MP M GI
Sbjct: 13 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSGI 72
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 73 EVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 129
>gi|225872108|ref|YP_002753563.1| two-component osmotic transcriptional regulator kdpE, winged helix
family [Acidobacterium capsulatum ATCC 51196]
gi|225794265|gb|ACO34355.1| two-component osmotic transcriptional regulator kdpE, winged helix
family [Acidobacterium capsulatum ATCC 51196]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + R L AL YE+ + +NGA A E +L++TD+ MPEMDG+
Sbjct: 2 RILVVDDEPQIVRVLRAALQSNDYEIFTASNGAEALQVYLEVNPALVITDLAMPEMDGVA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ ++ + ++KPF +++L+ V L
Sbjct: 62 LTREIRQRAS-TPVIVVSVRNQEREKIRALDEGADDYITKPFAIQELLARVRVQLRR 117
>gi|218129748|ref|ZP_03458552.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
gi|217987858|gb|EEC54183.1| hypothetical protein BACEGG_01327 [Bacteroides eggerthii DSM 20697]
Length = 1362
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+D+++ +L L Y+V +C+NG AYD + + L ++D++MPEMDG+
Sbjct: 1111 RVLVVEDEDEIKAYLKSELSDE-YKVETCSNGKEAYDLILRDTPDLAISDVMMPEMDGLT 1169
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ + + V+ +T + + + KPF+ L + L+ +
Sbjct: 1170 LCRKIKQNTNVNHVPVILLTAKSKPEDTLEGMETGADAYMVKPFNTELLKKTIANLINNR 1229
>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
gi|254039989|gb|ACT56785.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 122
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 122/122 (100%), Positives = 122/122 (100%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD
Sbjct: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI
Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
Query: 121 KN 122
KN
Sbjct: 121 KN 122
>gi|218438132|ref|YP_002376461.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218170860|gb|ACK69593.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+ILL ED+ D+ L KAL + Y V +G A++ + + ++L + D ++P M G
Sbjct: 2 RILLVEDEPDLGEALKKALNQKKYIVDWVQDGTEAWNCLDSQWTEYNLAIIDWLLPGMSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IEL +R L V+ +T + L KPF + +L+ + L +
Sbjct: 62 IELIKRLRARQNSLPVLMLTAKDQMEDKVIGLDAGADDYLVKPFGMAELLARLRA-LGRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|327312954|ref|YP_004328391.1| response regulator receiver domain-containing protein [Prevotella
denticola F0289]
gi|326945707|gb|AEA21592.1| response regulator receiver domain protein [Prevotella denticola
F0289]
Length = 716
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D+R +L L Y+V+ ++G +E L+++D++MP MDG+E
Sbjct: 467 TVLVVDDNKDIRVYLQLTLQDT-YQVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + L + V+ +T + + + A ++KPF + L + LL +
Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKARIGNLLQNR 585
>gi|319957218|ref|YP_004168481.1| two component transcriptional regulator, winged helix family
[Nitratifractor salsuginis DSM 16511]
gi|319419622|gb|ADV46732.1| two component transcriptional regulator, winged helix family
[Nitratifractor salsuginis DSM 16511]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 61/120 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++K+L+ EDD ++ L L AGYEVV +G A D++ E+ F LLL D+ P ++G
Sbjct: 3 SKKLLVLEDDANLSATLCDYLESAGYEVVPAYDGEEAQDRLYEQSFDLLLLDVNTPGVNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + A E + +FIT +V + L KPF L++L + LL +
Sbjct: 63 FDFLKEAREQGTETPAIFITARRSVEDLEEGFRSGADDYLRKPFELKELKIRIETLLQRR 122
>gi|317487013|ref|ZP_07945821.1| sigma-54 interaction domain-containing protein [Bilophila
wadsworthia 3_1_6]
gi|316921695|gb|EFV42973.1| sigma-54 interaction domain-containing protein [Bilophila
wadsworthia 3_1_6]
Length = 455
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 58/118 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +DD R L LG+ G V S +G A +V E PF ++L DI MP+MDG
Sbjct: 6 SHTVLVVDDDPGHRGMLEALLGRWGLAVTSAGDGKEAVARVCERPFDVVLMDIRMPDMDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + + +P + V+ +T ++AV ++ L KP L + + + L
Sbjct: 66 ITALKEIRKYNPAVPVVLMTAYSAVESAVEAMKSGAVDYLIKPLDFDQLKSTLFKTLE 123
>gi|307591954|ref|YP_003899545.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
gi|306985599|gb|ADN17479.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 7822]
Length = 1035
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ DMR ++ + L + ++V + NGA A + + ++ L+LTD++MPE+DG
Sbjct: 666 RILLVDDNADMRHYVSRLLSER-WQVETAANGAIALEMIAQQLPDLVLTDVMMPELDGFG 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ ++ A + L KPF +L+ V L +
Sbjct: 725 LLNTLRADPITKSIPIILLSARAGKEATIEGLEAGADDYLIKPFSTYELIARVQTQLQM 783
>gi|169335528|ref|ZP_02862721.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
17244]
gi|169258266|gb|EDS72232.1| hypothetical protein ANASTE_01942 [Anaerofustis stercorihominis DSM
17244]
Length = 235
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ EDD+ ++ + L Y+ + NG A D+ ++L D+ +P+MD
Sbjct: 1 MNRLILVVEDDNAVKNLISTTLESKEYKFHTAKNGKQALDEAISRKPDVILLDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ ++ ++ ++ + D+ L+KPF + +L+ +
Sbjct: 61 GVDIIKKIRG-WSNMPIIVVSARSEDKDKIDALDAGADDYLTKPFSVDELLARLRVAFRR 119
>gi|158335119|ref|YP_001516291.1| response regulator receiver domain-containing protein
[Acaryochloris marina MBIC11017]
gi|158305360|gb|ABW26977.1| response regulator receiver domain protein, putative [Acaryochloris
marina MBIC11017]
Length = 595
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D + R L + L + GYEV ++G +A + + +L+L DI+MP + GIE
Sbjct: 184 TLLVVDDVEANRDMLSRRLQRKGYEVALADSGEAALELMATTDIALVLLDIMMPGIGGIE 243
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R ++ +L V+ T A ++ ++KP L + + L +
Sbjct: 244 TLKRIRQIYSQEELPVIMATAKDASENVVEALELGANDYITKPIDLPVALARIQSHLKTR 303
Score = 116 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%)
Query: 17 FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE--LDPD 74
L + L + GY+VV +G K E L+L D+ +P M+G E R
Sbjct: 1 MLGRRLKRRGYDVVIAVDGGEGVTKALTEQPDLILMDMSLPVMNGWEATRTLKAGDQTAT 60
Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ ++ +T A V ++ A +KP L+ L+ ++ LL
Sbjct: 61 IPIIALTAHAMVGDREEALAAGCDDYDTKPVDLKRLLQKIETLL 104
>gi|312141110|ref|YP_004008446.1| two component system response regulator [Rhodococcus equi 103S]
gi|311890449|emb|CBH49767.1| two component system response regulator [Rhodococcus equi 103S]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 2 LIVEDEESLADPLAFLLRKEGFETTVVGDGPSALAEFERSGADIVLLDVMLPGMSGTDVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 62 KQLRAK-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 115
>gi|310657554|ref|YP_003935275.1| DNA-binding response regulator [Clostridium sticklandii DSM 519]
gi|308824332|emb|CBH20370.1| DNA-binding response regulator [Clostridium sticklandii]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIEL 64
++ ED+ +R F+ L + GYEV+ +G A + P + + D+++P +DG E+
Sbjct: 1 MVLEDEYAIRSFVTLNLKREGYEVIEAESGEQAIELYNANPDIKVAILDVMLPGIDGFEV 60
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E +P + V+ +T +SKPF +LV + L+
Sbjct: 61 LKYLREKNPQMGVIMLTARTHEQDKVLGLEYGADDYISKPFSPTELVARIRSLIRR 116
>gi|295689164|ref|YP_003592857.1| winged helix family two component transcriptional regulator
[Caulobacter segnis ATCC 21756]
gi|295431067|gb|ADG10239.1| two component transcriptional regulator, winged helix family
[Caulobacter segnis ATCC 21756]
Length = 237
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DDD + L + L + G+ V + ++G + L++ D++MP + GIE
Sbjct: 12 RVLLIDDDDQLTTMLSEFLVREGFSVGAAHDGERGEAAALSGDYDLVVLDVMMPRLSGIE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T + KP +LV + +L
Sbjct: 72 VLRRIRRA-SKVPVLLLTARGDEIDRIAGLDLGADDYVPKPCSPGELVARIRAILRR 127
>gi|225853570|ref|YP_002733803.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
melitensis ATCC 23457]
gi|254718183|ref|ZP_05179994.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. 83/13]
gi|256262946|ref|ZP_05465478.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|265983140|ref|ZP_06095875.1| two component transcriptional regulator [Brucella sp. 83/13]
gi|306837697|ref|ZP_07470566.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. NF 2653]
gi|225641935|gb|ACO01849.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
melitensis ATCC 23457]
gi|263092820|gb|EEZ16995.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|264661732|gb|EEZ31993.1| two component transcriptional regulator [Brucella sp. 83/13]
gi|306407255|gb|EFM63465.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. NF 2653]
gi|326410142|gb|ADZ67207.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
melitensis M28]
gi|326539862|gb|ADZ88077.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
melitensis M5-90]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|225569206|ref|ZP_03778231.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
15053]
gi|225162005|gb|EEG74624.1| hypothetical protein CLOHYLEM_05288 [Clostridium hylemonae DSM
15053]
Length = 220
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL +D+ ++ + AL K GY V + + P+SL+L D++MP +D
Sbjct: 1 MGERILAVDDERNILMLIRNALEKDGYMVDTVAVPEEVLH-LDLSPYSLILLDVMMPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L D ++F+T ++KPF + +L V L
Sbjct: 60 GYALCEEIRS-GTDCPILFLTAKTGEGDITKGLGLGADDYITKPFGIGELRARVQAHLRR 118
Query: 121 KN 122
++
Sbjct: 119 ES 120
>gi|223934839|ref|ZP_03626758.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223896292|gb|EEF62734.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + F++ L ++G+ V C +G + + + D+++P++DG+
Sbjct: 16 RILVVEDDAKIASFVVNGLKQSGFAVDRCADGEEGHTFAATTKYDAAVVDVMLPKLDGLS 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + + V+F++ A+V L+KPF +L + L+
Sbjct: 76 LVQRLRKEGIRIPVIFLSAKASVDDRVKGLQAGGDDYLTKPFAFSELHARIQALIRR 132
>gi|171059157|ref|YP_001791506.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
gi|170776602|gb|ACB34741.1| two component transcriptional regulator, winged helix family
[Leptothrix cholodnii SP-6]
Length = 241
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ + R + L AGY ++G VR+ L++ D+++P DG+
Sbjct: 8 HVLVVEDEPRLARLVSDYLVAAGYTTRIVDHGLDVLPAVRQHAPDLIVLDLMLPGRDGLS 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ V+ +T + KPF R++V V +L
Sbjct: 68 LCQELR-RFSEVPVIMLTARVEEVDRLIGLEAGADDYICKPFSPREVVARVKAVLRR 123
>gi|169349478|ref|ZP_02866416.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
gi|169293553|gb|EDS75686.1| hypothetical protein CLOSPI_00196 [Clostridium spiroforme DSM 1552]
Length = 227
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 65/120 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++I + EDD+++R + AL GYEVV +N A + +++E SL + D+++P+M
Sbjct: 1 MNERIFVIEDDENIREIINLALVSNGYEVVQFDNAIDALELMKKETPSLAIFDLMLPKMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ ++ E + +L ++ ++ + + ++KPF + +L V LL
Sbjct: 61 GIDAIKKIRETNNELPILILSAKDREIDKVNGLDSGSDDYMTKPFGILELQARVRSLLRR 120
>gi|23502991|ref|NP_699118.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
suis 1330]
gi|62290982|ref|YP_222775.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
abortus bv. 1 str. 9-941]
gi|82700892|ref|YP_415466.1| response regulator receiver [Brucella melitensis biovar Abortus
2308]
gi|161620053|ref|YP_001593940.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
canis ATCC 23365]
gi|163844158|ref|YP_001628563.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
suis ATCC 23445]
gi|189025195|ref|YP_001935963.1| transcriptional regulator [Brucella abortus S19]
gi|254690277|ref|ZP_05153531.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
abortus bv. 6 str. 870]
gi|254696392|ref|ZP_05158220.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
abortus bv. 2 str. 86/8/59]
gi|254700774|ref|ZP_05162602.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
suis bv. 5 str. 513]
gi|254705144|ref|ZP_05166972.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
suis bv. 3 str. 686]
gi|254707339|ref|ZP_05169167.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
pinnipedialis M163/99/10]
gi|254709119|ref|ZP_05170930.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
pinnipedialis B2/94]
gi|254713455|ref|ZP_05175266.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
ceti M644/93/1]
gi|254716189|ref|ZP_05178000.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
ceti M13/05/1]
gi|254731306|ref|ZP_05189884.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
abortus bv. 4 str. 292]
gi|256030645|ref|ZP_05444259.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
pinnipedialis M292/94/1]
gi|256045749|ref|ZP_05448627.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
melitensis bv. 1 str. Rev.1]
gi|256060106|ref|ZP_05450288.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
neotomae 5K33]
gi|256112468|ref|ZP_05453389.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
melitensis bv. 3 str. Ether]
gi|256258530|ref|ZP_05464066.1| phosphate regulon transcriptional regulatory protein PHOB [Brucella
abortus bv. 9 str. C68]
gi|260546246|ref|ZP_05821986.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260563045|ref|ZP_05833531.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260567387|ref|ZP_05837857.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260755816|ref|ZP_05868164.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260759039|ref|ZP_05871387.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260760764|ref|ZP_05873107.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260884841|ref|ZP_05896455.1| two component transcriptional regulator [Brucella abortus bv. 9
str. C68]
gi|261217962|ref|ZP_05932243.1| two component transcriptional regulator [Brucella ceti M13/05/1]
gi|261314822|ref|ZP_05954019.1| two component transcriptional regulator [Brucella pinnipedialis
M163/99/10]
gi|261316619|ref|ZP_05955816.1| two component transcriptional regulator [Brucella pinnipedialis
B2/94]
gi|261321188|ref|ZP_05960385.1| two component transcriptional regulator [Brucella ceti M644/93/1]
gi|261324082|ref|ZP_05963279.1| two component transcriptional regulator [Brucella neotomae 5K33]
gi|261751283|ref|ZP_05994992.1| two component transcriptional regulator [Brucella suis bv. 5 str.
513]
gi|261755848|ref|ZP_05999557.1| two component transcriptional regulator [Brucella suis bv. 3 str.
686]
gi|265987691|ref|ZP_06100248.1| two component transcriptional regulator [Brucella pinnipedialis
M292/94/1]
gi|265992165|ref|ZP_06104722.1| two component transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|265993903|ref|ZP_06106460.1| two component transcriptional regulator [Brucella melitensis bv. 3
str. Ether]
gi|294851371|ref|ZP_06792044.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. NVSL 07-0026]
gi|297247369|ref|ZP_06931087.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
abortus bv. 5 str. B3196]
gi|23349030|gb|AAN31033.1| phosphate regulon transcriptional regulatory protein Phob [Brucella
suis 1330]
gi|62197114|gb|AAX75414.1| PhoB, phosphate regulon transcriptional regulatory protein Phob
[Brucella abortus bv. 1 str. 9-941]
gi|82616993|emb|CAJ12102.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal [Brucella melitensis biovar Abortus 2308]
gi|161336864|gb|ABX63169.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
canis ATCC 23365]
gi|163674881|gb|ABY38992.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
suis ATCC 23445]
gi|189020767|gb|ACD73489.1| Transcriptional regulatory protein [Brucella abortus S19]
gi|260096353|gb|EEW80229.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260153061|gb|EEW88153.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260156905|gb|EEW91985.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260669357|gb|EEX56297.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260671196|gb|EEX58017.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260675924|gb|EEX62745.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260874369|gb|EEX81438.1| two component transcriptional regulator [Brucella abortus bv. 9
str. C68]
gi|260923051|gb|EEX89619.1| two component transcriptional regulator [Brucella ceti M13/05/1]
gi|261293878|gb|EEX97374.1| two component transcriptional regulator [Brucella ceti M644/93/1]
gi|261295842|gb|EEX99338.1| two component transcriptional regulator [Brucella pinnipedialis
B2/94]
gi|261300062|gb|EEY03559.1| two component transcriptional regulator [Brucella neotomae 5K33]
gi|261303848|gb|EEY07345.1| two component transcriptional regulator [Brucella pinnipedialis
M163/99/10]
gi|261741036|gb|EEY28962.1| two component transcriptional regulator [Brucella suis bv. 5 str.
513]
gi|261745601|gb|EEY33527.1| two component transcriptional regulator [Brucella suis bv. 3 str.
686]
gi|262764884|gb|EEZ10805.1| two component transcriptional regulator [Brucella melitensis bv. 3
str. Ether]
gi|263003231|gb|EEZ15524.1| two component transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|264659888|gb|EEZ30149.1| two component transcriptional regulator [Brucella pinnipedialis
M292/94/1]
gi|294819960|gb|EFG36959.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. NVSL 07-0026]
gi|297174538|gb|EFH33885.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
abortus bv. 5 str. B3196]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|15804453|ref|NP_290493.1| nitrogen regulation protein NR(I) [Escherichia coli O157:H7 EDL933]
gi|25301123|pir||E86074 hypothetical protein glnG [imported] - Escherichia coli (strain
O157:H7, substrain EDL933)
gi|12518747|gb|AAG59057.1|AE005617_6 response regulator for gln (sensor glnL) (nitrogen regulator I,
NRI) [Escherichia coli O157:H7 str. EDL933]
Length = 469
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGXEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|300785437|ref|YP_003765728.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299794951|gb|ADJ45326.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AEDD L + L + + V+ ++G A D+ LL+ D++MP +DG+E+
Sbjct: 5 VLVAEDDVKQAELLRRYLRREAHSVLVVHDGREAVDQAALRHPDLLVLDVMMPGLDGLEV 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+ +T + ++KP+ R+L+ V LL
Sbjct: 65 VRALRRE-SDVPVLLVTARSTAEDKLAGFDLGADDYVTKPYDPRELMARVRSLLRR 119
>gi|282852927|ref|ZP_06262268.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
gi|282556035|gb|EFB61656.1| putative regulatory protein VanR [Lactobacillus gasseri 224-1]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ DI+MP+M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D ++ ++ ++ + + KPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118
>gi|190574616|ref|YP_001972461.1| putative two-component response regulator transcriptional regulator
[Stenotrophomonas maltophilia K279a]
gi|190012538|emb|CAQ46166.1| putative two-component response regulator transcriptional
regulatory protein [Stenotrophomonas maltophilia K279a]
Length = 232
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L + L +AGY V NG + L++ D+++P +DG
Sbjct: 2 KLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWN 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E + V+F+T +++A L+KPF +L+ V LL
Sbjct: 62 VLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRR 118
>gi|154251472|ref|YP_001412296.1| two component transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154155422|gb|ABS62639.1| two component transcriptional regulator, winged helix family
[Parvibaculum lavamentivorans DS-1]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ +D+ +R+ L L GYE+ NG +A D + + L++ D+ +P++ G
Sbjct: 5 SHRVLVIDDEPPIRKLLRMGLSAHGYEIQEAPNGRTALDMLAQN-PDLIILDLGLPDIQG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L R + + ++ ++ ++ ++KPF + +L+ + L +
Sbjct: 64 LDLLRTIRSRNESVPIVVLSSRGDETGKVEALDLGADDYVTKPFGMDELLARMRAALRHR 123
>gi|66731635|gb|AAY52002.1| VanR [Paenibacillus thiaminolyticus]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ + L Y V A + + + L + DI++P
Sbjct: 1 MSDKILVVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKTDLDLAILDIMLPGAS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ + ++ +T ++K F +L+ V L
Sbjct: 61 GLAICQKIRDKH-TYPIIMLTAKDTEVDKITGLTIGADDYITKSFRPLELIARVKAQLRR 119
>gi|70731371|ref|YP_261112.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68345670|gb|AAY93276.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 222
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + L++ L + GY V +G A + EP+ L++ D+ +P + G+E
Sbjct: 2 RLLVVEDHVSLADELLEGLNRQGYAVDWLADGRDALYQGASEPYDLIILDLGLPGVPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ V+ +T + A + LSKPFH +L V LL +
Sbjct: 62 VLRKWRADGLATPVLVLTARGSWAERIEGLKAGADDYLSKPFHPEELHLRVQALLRRSH 120
>gi|53715148|ref|YP_101140.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|60683084|ref|YP_213228.1| two-component system, transcriptional regulatory protein
[Bacteroides fragilis NCTC 9343]
gi|253566279|ref|ZP_04843733.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|265766978|ref|ZP_06094807.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
gi|55977875|sp|Q9AE24|RPRY_BACFR RecName: Full=Transcriptional regulatory protein rprY
gi|52218013|dbj|BAD50606.1| two-component system response regulator [Bacteroides fragilis
YCH46]
gi|60494518|emb|CAH09315.1| two-component system, transcriptional regulatory protein
[Bacteroides fragilis NCTC 9343]
gi|251945383|gb|EES85821.1| two-component system response regulator [Bacteroides sp. 3_2_5]
gi|263253355|gb|EEZ24831.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_16]
gi|301164599|emb|CBW24158.1| two-component system, transcriptional regulatory protein
[Bacteroides fragilis 638R]
Length = 236
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + + + + L + D++MP+
Sbjct: 4 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPK 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 64 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|332666853|ref|YP_004449641.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
gi|332335667|gb|AEE52768.1| histidine kinase [Haliscomenobacter hydrossis DSM 1100]
Length = 1368
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ D+ +L L + Y + +G +DK E L+++D++MP MDG L
Sbjct: 1115 ILLVEDNPDVAAYLHSCLPE--YRLEFAKDGLEGFDKATELIPDLIISDVMMPRMDGFTL 1172
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + ++ +T A L KPF +L + +LL ++
Sbjct: 1173 CQHLRNDERSSHIPIILLTAKADFESKLTGLDRGADAYLEKPFQPEELRLRIKKLLELR 1231
>gi|315647309|ref|ZP_07900422.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277511|gb|EFU40840.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +L+ +DD + L L + V++ + A+D +++P ++ DI+MP
Sbjct: 1 MSVYHTVLVVDDDQSIVELLRDFLENDNFHVMTAGDTEQAWDMFKQQPVHCIVLDIMMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+G EL RR + ++F++ + + K ++V V +L
Sbjct: 61 QNGFELCRRIRGE-SSVPILFLSARSHDVDKIRGLTLGGDDYIVKTASPGEIVARVKAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|284052602|ref|ZP_06382812.1| response regulator receiver modulated serine phosphatase
[Arthrospira platensis str. Paraca]
Length = 374
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD +R L + L K GY+VV +NG +K +E +L++ D +MP + GIE+
Sbjct: 1 LVIDDDTIIRELLKRTLKKQGYDVVVASNGEEGIEKAKELRPALMICDWIMPRLTGIEVC 60
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + + +T AV LSKP + +L V L +
Sbjct: 61 RQVKAMPELSTTQFFLLTSLTAVDDRVKGLDAGADDFLSKPIEMNELYARVRAGLRL 117
>gi|260588963|ref|ZP_05854876.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|331083315|ref|ZP_08332428.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260540742|gb|EEX21311.1| DNA-binding response regulator ResD [Blautia hansenii DSM 20583]
gi|330404396|gb|EGG83941.1| hypothetical protein HMPREF0992_01352 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED++ + L +G+EV N G + EE + L + D+++PE+D
Sbjct: 1 MS-KILIVEDEEAIADLEKDYLELSGFEVEIENRGDVGLKRALEEDYDLFILDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICREIRNQ-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|255656291|ref|ZP_05401700.1| two-component response regulator [Clostridium difficile QCD-23m63]
gi|296450268|ref|ZP_06892029.1| response regulator VanR [Clostridium difficile NAP08]
gi|296878683|ref|ZP_06902688.1| response regulator VanR [Clostridium difficile NAP07]
gi|296261031|gb|EFH07865.1| response regulator VanR [Clostridium difficile NAP08]
gi|296430490|gb|EFH16332.1| response regulator VanR [Clostridium difficile NAP07]
Length = 238
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD ++ + L + V+ +G A D + E L++ D++MP +D
Sbjct: 1 MNQNILVVDDDREIVDAIEFYLKPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ + E ++ ++ ++ + ++KPF+ +L V L
Sbjct: 61 GLKTTLKIREKR-NIPIILLSAKSEDMDKVIGLNMGADDYITKPFNPLELTARVKSQLRR 119
>gi|298493108|ref|YP_003723285.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
azollae' 0708]
gi|298235026|gb|ADI66162.1| response regulator receiver modulated diguanylate cyclase ['Nostoc
azollae' 0708]
Length = 338
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D R L K L G++V +G A + EP L+L DI MP+M+G E+
Sbjct: 13 ILIVDDNPDNLRLLSKMLESKGFKVKKTVSGEIAIQAAKIEPPDLILLDINMPDMNGYEV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
R+ E ++ ++FI+ + ++KPF +++ V
Sbjct: 73 CRQLKSQEKTANIPIIFISALDQTTDKIIAFEIGGGDYITKPFQELEVLARVRN 126
>gi|169631126|ref|YP_001704775.1| sensory transduction protein RegX3 [Mycobacterium abscessus ATCC
19977]
gi|169243093|emb|CAM64121.1| Sensory transduction protein RegX3 [Mycobacterium abscessus]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+D + L L K G+E N+G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEDSLADPLAFLLRKEGFEATIVNDGPSALAEFERAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAK-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|167629923|ref|YP_001680422.1| predicted signal transduction domain protein [Heliobacterium
modesticaldum Ice1]
gi|167592663|gb|ABZ84411.1| predicted signal transduction domain protein [Heliobacterium
modesticaldum Ice1]
Length = 853
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD MR L +AL K GY V+ +GA+A + + ++L D++MP +DG L
Sbjct: 8 ILVADDDPAMRFMLRRALEKDGYAVIEAEDGAAALEAYEQAEPDIVLMDVLMPVLDGFAL 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ ITG A + ++KP L V RLL ++
Sbjct: 68 CAQLQTLPRHRRAPVLMITGLDDDASVEKAYQSGATDYITKPIQWAVLRQRVRRLLQAQH 127
>gi|153807242|ref|ZP_01959910.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
gi|149130362|gb|EDM21572.1| hypothetical protein BACCAC_01520 [Bacteroides caccae ATCC 43185]
Length = 1318
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 65/127 (51%), Gaps = 8/127 (6%)
Query: 2 NQKI-----LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
N++I L+ ED++ +++ L Y+V + ++G A + +++E S++L+D+VM
Sbjct: 1044 NKRIEGAKMLIVEDNESIKQMLAGIFETF-YQVSTASDGEEALEMIQKEMPSIILSDVVM 1102
Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
P M G EL +R + V+ +T A+ N + ++KPF+ L++
Sbjct: 1103 PRMSGTELCKRIKTDFNTCHIPVVLLTARTAIEHNIEGLKIGADDYITKPFNTNLLISRC 1162
Query: 115 NRLLTIK 121
N L+ +
Sbjct: 1163 NNLVNSR 1169
>gi|117618843|ref|YP_855862.1| two-component response regulator [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560250|gb|ABK37198.1| two-component response regulator [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 242
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ ++ L L + G + +G A + LLL D+ MP++DG ++
Sbjct: 16 VLIAEDEAEIADILAAYLQRHGLRTLHAADGREALAMHQTCKPDLLLLDVQMPQLDGWQV 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ V+ +T + KPF+ ++V V +L
Sbjct: 76 LSEIRARG-DMPVIMLTALDQDLDKLMGLRMGADDYVVKPFNPAEVVARVQAVLRR 130
>gi|83717734|ref|YP_439572.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
gi|167577990|ref|ZP_02370864.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
TXDOH]
gi|167616115|ref|ZP_02384750.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
Bt4]
gi|257142704|ref|ZP_05590966.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
gi|83651559|gb|ABC35623.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
E264]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AG+ +G + + E + L++ D+++P DG
Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + KPF +LV V +L
Sbjct: 62 VLERLRRERS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>gi|117676235|ref|YP_863811.1| DNA-binding transcriptional activator CusR [Shewanella sp. ANA-3]
gi|117615059|gb|ABK50512.1| two component heavy metal response transcriptional regulator,
winged helix family [Shewanella sp. ANA-3]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+M+G +
Sbjct: 2 KILIVEDEIKTGEYLSKGLREAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDMNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T + L KPF +L+ V LL N
Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVKTLLRRGN 120
>gi|15599296|ref|NP_252790.1| BfmR [Pseudomonas aeruginosa PAO1]
gi|107103618|ref|ZP_01367536.1| hypothetical protein PaerPA_01004688 [Pseudomonas aeruginosa PACS2]
gi|254236989|ref|ZP_04930312.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
gi|254242786|ref|ZP_04936108.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
gi|9950302|gb|AAG07488.1|AE004826_6 BfmR [Pseudomonas aeruginosa PAO1]
gi|126168920|gb|EAZ54431.1| hypothetical protein PACG_03014 [Pseudomonas aeruginosa C3719]
gi|126196164|gb|EAZ60227.1| hypothetical protein PA2G_03552 [Pseudomonas aeruginosa 2192]
Length = 246
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|332289161|ref|YP_004420013.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
gi|330432057|gb|AEC17116.1| transcriptional regulator PhoB [Gallibacterium anatis UMN179]
Length = 229
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ +R + L K YEV+ + SA +++ E+ L+L D ++P
Sbjct: 1 MAGKILIVEDERAIREMVALYLLKQNYEVIEAEDYQSAVNRLEEQ-PQLILLDWMLPGRS 59
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI E + ++ +T +A ++KPF + L+ + L
Sbjct: 60 GIMFIEYLKKQEQTAKIPIIMLTARSAEEDCITCLNAGADDYITKPFSPKILLARIEALW 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|295086435|emb|CBK67958.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1339
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++L+ EDD+++R ++ K G + ++ NG A +++ ++ L+++DI+MPEMDG
Sbjct: 1082 KYRVLIVEDDEEIRNYIAKEFGDK-FHIMESRNGKEALEQIFKKTPDLVISDIMMPEMDG 1140
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L R+ + + V+ +T N + + KPF++ L V L+
Sbjct: 1141 LTLCRKIKQNVNLNHIPVILLTAKTREEDNLEGLNTGADAYIMKPFNIEILQKTVENLIN 1200
Query: 120 IK 121
+
Sbjct: 1201 TR 1202
>gi|293369031|ref|ZP_06615630.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292635903|gb|EFF54396.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 1321
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187
Query: 121 K 121
+
Sbjct: 1188 R 1188
>gi|254439299|ref|ZP_05052793.1| response regulator receiver domain protein [Octadecabacter
antarcticus 307]
gi|198254745|gb|EDY79059.1| response regulator receiver domain protein [Octadecabacter
antarcticus 307]
Length = 247
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFL-IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KILL +DD+D+R L + L ++V NGA A K +E + L++ D+ +P+ DG
Sbjct: 24 KKILLVDDDEDLRDALGEQLLMTEDFDVFEAGNGAEAMTKAKESLYDLVILDVGLPDTDG 83
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R + ++ +TG + ++KPF L+ + L
Sbjct: 84 RELCRLMRKQGVKCPIVMLTGHDGDSDTILGLDAGANDYVTKPFKFPVLLARIRAQLR 141
>gi|148283363|gb|ABQ57263.1| AdeR [Acinetobacter baumannii]
Length = 226
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 14 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 74 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 128
>gi|114705837|ref|ZP_01438740.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
gi|114538683|gb|EAU41804.1| transcriptional regulator [Fulvimarina pelagi HTCC2506]
Length = 238
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD +R L + L + V + ++ A A + F L++ D++MP +G++
Sbjct: 18 HILIVDDDRRIRSLLSRFLTSKRFRVSTASDAAEARRILGGLDFDLMIVDVMMPGENGLD 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D ++ +T + + + L+KPF R+L+ +N +L
Sbjct: 78 LVRSLRQ-TRDCPILMLTARSEIDSRIEGLEAGVDDYLAKPFDPRELLLRLNNILKR 133
>gi|148652854|ref|YP_001279947.1| two component transcriptional regulator [Psychrobacter sp. PRwf-1]
gi|148571938|gb|ABQ93997.1| two component transcriptional regulator, winged helix family
[Psychrobacter sp. PRwf-1]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ ED+ D+ + GY++ + +NG S E + ++L D+++P MDG
Sbjct: 2 HKILIIEDNPDIVANVYAFFEPKGYQLDNAHNGPSGLTLAAENTYDVILLDVMLPGMDGT 61
Query: 63 ELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + E L V+ +T ++ L KPF L +L V L+
Sbjct: 62 QLCKALREKLHNKTPVLMLTARDTLSDKVAGFDSGADDYLVKPFSLVELEVRVRALIRR 120
>gi|109896549|ref|YP_659804.1| two component transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|109698830|gb|ABG38750.1| two component transcriptional regulator, winged helix family
[Pseudoalteromonas atlantica T6c]
Length = 239
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 54/119 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ EDD D+ + L + G E+ +G +A + + ++L D+++P M
Sbjct: 1 MTDSILIVEDDLDIANLMRVNLLELGVEIDHQVDGETALHQALSNEYDVILLDVMLPNMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ R+ + P ++ +T + ++KPF +R+L V L
Sbjct: 61 GLDICRKIRDERPMQIIIMLTSKNSETDRVLGLELGADDYMTKPFSVRELQARVRSQLR 119
>gi|306843562|ref|ZP_07476163.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. BO1]
gi|306276253|gb|EFM57953.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
sp. BO1]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|302544744|ref|ZP_07297086.1| DNA-binding response regulator MtrA [Streptomyces hygroscopicus
ATCC 53653]
gi|302462362|gb|EFL25455.1| DNA-binding response regulator MtrA [Streptomyces himastatinicus
ATCC 53653]
Length = 225
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 5 LLIEDDDAIRTALELSLSRQGHRVATAATGEDGLKLLREQRPDLIVLDVMLPGIDGFEVC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + KP R L + +L
Sbjct: 65 RRIRRTD-QLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 118
>gi|295100030|emb|CBK89119.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium
cylindroides T2-87]
Length = 231
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +R ++ L Y S NG A K+ E +LL D+ +P++DGIE+
Sbjct: 6 VLVVEDDKSVRNLIVTTLQANDYPYTSAENGKEALSKIETERPDVLLLDLGLPDIDGIEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ ++ ++ I+ + + L+KPF + +L+ +
Sbjct: 66 IKELR-TWSNMPIIVISARSEDKDKIQALDMGADDYLTKPFSVDELLARLR 115
>gi|260169549|ref|ZP_05756360.1| Transcriptional regulatory protein [Brucella sp. F5/99]
gi|261759076|ref|ZP_06002785.1| transcriptional regulatory protein [Brucella sp. F5/99]
gi|261739060|gb|EEY27056.1| transcriptional regulatory protein [Brucella sp. F5/99]
Length = 228
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETERLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|297568936|ref|YP_003690280.1| Fis family transcriptional regulator [Desulfurivibrio alkaliphilus
AHT2]
gi|296924851|gb|ADH85661.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfurivibrio alkaliphilus AHT2]
Length = 467
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 65/117 (55%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ MR FL L + GY V + G +A + + E + LL++DI MP +G+
Sbjct: 2 KRILVVDDELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL RA E+ P+L V+ +T FA+ + ++KPF + ++ + V L+
Sbjct: 62 ELLVRAKEIKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALS 118
>gi|209550745|ref|YP_002282662.1| Fis family transcriptional regulator [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209536501|gb|ACI56436.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 444
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP M
Sbjct: 1 MNDAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L ++ ELDP++ V+ +TG V L + + KPF L + R +
Sbjct: 61 DGMTLMQKIRELDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAME 120
Query: 120 IK 121
+
Sbjct: 121 RR 122
>gi|162295952|gb|ABX83923.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|89895637|ref|YP_519124.1| hypothetical protein DSY2891 [Desulfitobacterium hafniense Y51]
gi|89335085|dbj|BAE84680.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 263
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ ++ L L K GY+V+ +G+ A + E+ L++ DI++P + G+E+
Sbjct: 40 ILVVDDEEPIQELLRFNLEKEGYQVLIAADGSEALGILEEKQPELVVLDIMLPGISGLEV 99
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ + +L V+ +T ++KPF R+
Sbjct: 100 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 146
>gi|120554687|ref|YP_959038.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
gi|120324536|gb|ABM18851.1| integral membrane sensor hybrid histidine kinase [Marinobacter
aquaeolei VT8]
Length = 782
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ + L K G+ V NG A + ++ + + L+L D MP MDG E
Sbjct: 657 ILLVEDNQVNQLVASSLLKKLGHRVDHAENGRRALEALQNKTYDLVLMDCQMPVMDGYEA 716
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R + L V+ +T D A ++KP++ +L + R
Sbjct: 717 TRAIRQNPQWQTLPVIAVTANVMQGDREDCLASGMNDYITKPYNRDELRAVIARW 771
>gi|114563674|ref|YP_751187.1| response regulator receiver modulated metal dependent
phosphohydrolase [Shewanella frigidimarina NCIMB 400]
gi|114334967|gb|ABI72349.1| response regulator receiver modulated metal dependent
phosphohydrolase [Shewanella frigidimarina NCIMB 400]
Length = 331
Score = 141 bits (356), Expect = 4e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ R L K L Y ++ +G A + + L+L D++MP M G E
Sbjct: 11 TILIVDDEPANLRVLKKMLEDQ-YRLIFAKSGEEALRLIERDLPDLILLDVMMPGMTGFE 69
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + V+FIT + ++KP + V L++
Sbjct: 70 VCQQLKTVQRTKAVPVIFITALSDEVDEAKGFDVGAVDYITKPVSPAVVKARVRTHLSL 128
>gi|325292348|ref|YP_004278212.1| two component response regulator [Agrobacterium sp. H13-3]
gi|325060201|gb|ADY63892.1| two component response regulator [Agrobacterium sp. H13-3]
Length = 223
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L AL +AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RILVVEDDANLNRQLTDALKEAGYVVDQAFDGEEGHYLGDTEPYDAIVLDIGLPQMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ V L+
Sbjct: 62 VVEKWRAAGKAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARVRALIRR 118
>gi|288960040|ref|YP_003450380.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288912348|dbj|BAI73836.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 221
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + R + AL AGY V +G A R EP+ L++ D+ +P++ G E
Sbjct: 2 RILIVEDDAALARGVTGALKLAGYAVDHVASGEEAVRLERAEPYGLVVLDLGLPDLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + VM +T AVA L KPF + V L+
Sbjct: 62 VLTLIRRRGSTVPVMILTAREAVADRVKGLDLGADDYLLKPFDPAEFEARVRALMRR 118
>gi|322417907|ref|YP_004197130.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
gi|320124294|gb|ADW11854.1| multi-sensor hybrid histidine kinase [Geobacter sp. M18]
Length = 870
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+AEDD +R+ L L + Y+V +G A + ++ P+ +++ D+ MP +DG
Sbjct: 750 RRLLIAEDDPTIRQVLGTMLARFEYQVEYAEDGHQAVQRWQQSPYDMIIMDVQMPGLDGF 809
Query: 63 ELARRAT----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E R E L ++ +T A A +SKP R+ + ++ LL
Sbjct: 810 EATRAIRQKELERGGRLPILAMTAHAMKEDEQRCIAAGMDDYISKPIDFRECLGKIGALL 869
>gi|254294350|ref|YP_003060373.1| response regulator receiver modulated diguanylate cyclase [Hirschia
baltica ATCC 49814]
gi|254042881|gb|ACT59676.1| response regulator receiver modulated diguanylate cyclase [Hirschia
baltica ATCC 49814]
Length = 459
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + R+ L L ++V + +G A DK ++L D++MP MD
Sbjct: 1 MSARVLVVDDIEANRKLLCAKLAHEYFQVTTAVDGLDAIDKAIATEPDIILLDVMMPRMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E R + ++ +T L+KP + L++ V L
Sbjct: 61 GFEACRELKFDPRTEHIPIVMVTALNEREDRLKGLRAGADDFLTKPINDLQLLSRVRAL 119
Score = 70.2 bits (172), Expect = 8e-11, Method: Composition-based stats.
Identities = 19/123 (15%), Positives = 49/123 (39%), Gaps = 7/123 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGAS---AYDKVREEPFSLLLTDIVMPEMD 60
++L+ +D++ + + L ++ ++ N + +++ + + D
Sbjct: 155 RVLVVDDNERQAARICRYLET-DHKPMTLANAGAKPGGVG-AGAATVDIMVLSLGGEKYD 212
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++L E DL ++ I G AL + + +L +P +L+ V +
Sbjct: 213 GLKLCAYLRNLEATRDLPILAIVGAEDEALAVRALDLGASDILVRPIDPEELLARVKTQV 272
Query: 119 TIK 121
+ K
Sbjct: 273 SKK 275
>gi|218129870|ref|ZP_03458674.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697]
gi|317475797|ref|ZP_07935054.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|217987980|gb|EEC54305.1| hypothetical protein BACEGG_01451 [Bacteroides eggerthii DSM 20697]
gi|316907957|gb|EFV29654.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 225
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++R + +L K + V + + SA DK+ + + +L DI++P G++
Sbjct: 2 KILIVEDEQELRETIRTSLLKEKFVVETAADYFSALDKINDYDYDCVLLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ D L+KPFHL +L + L+ +
Sbjct: 62 LLRELKRLHRTDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIKSLIRRR 119
>gi|229916056|ref|YP_002884702.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
gi|229467485|gb|ACQ69257.1| two component transcriptional regulator, winged helix family
[Exiguobacterium sp. AT1b]
Length = 221
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + R + + AG+EV++ +G + + +P + DI++P +DG E
Sbjct: 2 RILIVEDDPSILRLVKETFEDAGHEVLTATDGNTGEELFTTQPIDAAIVDIMLPGLDGRE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D+ V+ +T ++KPF +L+ + +
Sbjct: 62 LCRRLKATL-DIPVILLTALDEWEDKRQGFELGADDYVTKPFIPEELLFRLQAVSRR 117
>gi|168180268|ref|ZP_02614932.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|182668736|gb|EDT80714.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
Length = 230
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + + L++ DI+MP+MDGI+
Sbjct: 5 KVLIVDDEDEIREAIEIYLKNEGITVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|167770186|ref|ZP_02442239.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
17241]
gi|167667508|gb|EDS11638.1| hypothetical protein ANACOL_01529 [Anaerotruncus colihominis DSM
17241]
Length = 230
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AEDD +R + L GY+V +GA A ++ L++ DI+MPE+DG L
Sbjct: 10 ILVAEDDYSLRELMSDFLSDNGYQVYRAKDGAEALIQIERSHIDLMICDIMMPELDGYGL 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E DL V+ +T + + KP +L+ V+ LL
Sbjct: 70 TRELREAGFDLPVIMVTARETLEDKHMGFLAGTDDYMVKPIDFEELLWRVSALLRR 125
>gi|166211745|ref|ZP_02237780.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400429|ref|ZP_02305942.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167424106|ref|ZP_02315859.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229894057|ref|ZP_04509243.1| response regulator of zinc sigma-54-dependent two-component system
[Yersinia pestis Pestoides A]
gi|229903422|ref|ZP_04518535.1| response regulator of zinc sigma-54-dependent two-component system
[Yersinia pestis Nepal516]
gi|294503177|ref|YP_003567239.1| transcriptional regulatory protein hydG [Yersinia pestis Z176003]
gi|166207516|gb|EDR51996.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167050378|gb|EDR61786.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167056955|gb|EDR66718.1| transcriptional regulatory protein ZraR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229679192|gb|EEO75295.1| response regulator of zinc sigma-54-dependent two-component system
[Yersinia pestis Nepal516]
gi|229703942|gb|EEO90955.1| response regulator of zinc sigma-54-dependent two-component system
[Yersinia pestis Pestoides A]
gi|262361214|gb|ACY57935.1| transcriptional regulatory protein hydG [Yersinia pestis D106004]
gi|294353636|gb|ADE63977.1| transcriptional regulatory protein hydG [Yersinia pestis Z176003]
gi|320014314|gb|ADV97885.1| Response regulator of zinc sigma-54-dependenttwo-component system
[Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 454
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 5 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 65 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 124
Query: 122 N 122
+
Sbjct: 125 H 125
>gi|148380236|ref|YP_001254777.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153932234|ref|YP_001384540.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153936748|ref|YP_001388056.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148289720|emb|CAL83825.1| two-component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152928278|gb|ABS33778.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152932662|gb|ABS38161.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 235
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD ++ + ++L K GY++ +G A +K + E + +++ DI+MP MDGIE
Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIGQAFHGLEAMEKFQGENYHMVIMDIMMPVMDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E + ++ ++ + + KPF + +L+ V +
Sbjct: 65 SMRRIREK-SKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRR 120
>gi|187919104|ref|YP_001888135.1| two component heavy metal response winged helix family
transcriptional regulator [Burkholderia phytofirmans
PsJN]
gi|187717542|gb|ACD18765.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia phytofirmans PsJN]
Length = 226
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +L K L +AGY V NG + + E + LL+ D+++P DG
Sbjct: 2 RILLVEDEPKTGAYLRKGLSEAGYVVDWAQNGVTGQHQAETEDYDLLILDVMLPGQDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+F+T V L+KPF +L+ V +L
Sbjct: 62 LLQNLRRKRC-TPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELIARVRSILRR 117
>gi|83311728|ref|YP_421992.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82946569|dbj|BAE51433.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Magnetospirillum
magneticum AMB-1]
Length = 278
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++I + +D+ D+R L + L GY V +GA A +R +P L + D+ +P+MDG+
Sbjct: 45 KRIYVVDDEPDIRALLRQVLEGYGYHVTPLASGALARQAIRRDPPDLCIVDLGLPDMDGL 104
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R E D V+ +TG V+ + KPF R+LV VN ++ ++
Sbjct: 105 TLVRELWE-DVRFGVIILTGRGGVSDRVLGLELGADDYIVKPFEPRELVARVNSVIRRRD 163
>gi|331268289|ref|YP_004394781.1| transcriptional regulatory protein [Clostridium botulinum
BKT015925]
gi|329124839|gb|AEB74784.1| transcriptional regulatory protein [Clostridium botulinum
BKT015925]
Length = 236
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D++++ L L K + NG A++ + L + DI+MP++DG
Sbjct: 3 KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFEIIENNDIDLAIIDIMMPKIDGYH 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ E ++ V+ ++ + + ++KPF+ ++V V L
Sbjct: 63 LVKKIREKY-EIPVIMLSAKSEYSDKILGLELGADDYITKPFNAMEVVARVKAQLRR 118
>gi|284046896|ref|YP_003397236.1| two component transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283951117|gb|ADB53861.1| two component transcriptional regulator, winged helix family
[Conexibacter woesei DSM 14684]
Length = 251
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMDGI 62
IL+ +D+ D+R L ++ + G+ V S +G +A ++ E F ++L D+ + +G
Sbjct: 24 TILVVDDESDLREMLTRSFTREGHRVQSVADGRAAIERASSESFDVVLLDVALGSGPNGY 83
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + ++ +T + A ++KPF L +L + + +L
Sbjct: 84 EVCRTLRARRNVVPIIMLTALDSEADAVLGLEAGADDYVTKPFGLAELRSRIRAVLRR 141
>gi|253572680|ref|ZP_04850081.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251837812|gb|EES65902.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1321
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ FL KALG+ +++ ++G A ++ ++++D++MP M+G EL
Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ +T L+KPF + L+ + L +
Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRLKNR 1181
>gi|239980291|ref|ZP_04702815.1| two-component system response regulator [Streptomyces albus J1074]
gi|291452155|ref|ZP_06591545.1| two-component system response regulator [Streptomyces albus J1074]
gi|291355104|gb|EFE82006.1| two-component system response regulator [Streptomyces albus J1074]
Length = 239
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + + L D+++P MDG+
Sbjct: 6 HVLFVEDDDVIREATQLALERVGFRVTAMPDGLSGLEAFRADRPDIALLDVMVPGMDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGSVLVARIRAVLRR 121
>gi|257790500|ref|YP_003181106.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|325829924|ref|ZP_08163382.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
gi|257474397|gb|ACV54717.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|325488091|gb|EGC90528.1| response regulator receiver domain protein [Eggerthella sp. HGA1]
Length = 226
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + L ++L A Y V +G ++ + L++ D+++PE DG
Sbjct: 2 KLLIVEDDRLLSNALARSLRDA-YAVDQAFDGEEGLFYAAQDVYDLVVLDVMLPERDGFS 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ +T +A A L+KPF +L+ + +L
Sbjct: 61 VLEALRAQGVDTPVLMLTARSATADKLRGLRSGADDYLAKPFDRDELLARIEAILRR 117
>gi|212695343|ref|ZP_03303471.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
gi|212662072|gb|EEB22646.1| hypothetical protein BACDOR_04890 [Bacteroides dorei DSM 17855]
Length = 1346
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1208
Query: 120 IK 121
+
Sbjct: 1209 SR 1210
>gi|304322337|ref|YP_003855980.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
gi|303301239|gb|ADM10838.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503]
Length = 225
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD++ F+ L + G+ V + G + E P L++ D ++P +D
Sbjct: 1 MT-RILVIEDDEETASFIANGLKQEGFAVDTAKTGTDGLFQATESPPDLVVVDRMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + + V+F+T AV L KPF +L V LL
Sbjct: 60 GVSVIKALRAAGVKIPVLFLTAMGAVEDRVAGLEAGGDDYLVKPFSFMELRARVTTLLRR 119
>gi|332655319|ref|ZP_08421059.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
gi|332515824|gb|EGJ45434.1| DNA-binding response regulator [Ruminococcaceae bacterium D16]
Length = 245
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ +DD D+ L L GY+ V NG A V + L+L DI+MPE+DGI
Sbjct: 16 HTILICDDDKDIVSALDIYLSSEGYKTVKAYNGNEALRAVEQNDIHLILMDIMMPELDGI 75
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ +T + ++KPF+ +++ V L
Sbjct: 76 RATAKLRE-GSNVPIILLTAKSEDNDKILGLNIGADDYITKPFNPLEVIARVKSQLRR 132
>gi|330836602|ref|YP_004411243.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Spirochaeta coccoides DSM 17374]
gi|329748505|gb|AEC01861.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Spirochaeta coccoides DSM 17374]
Length = 453
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+A+D+ ++R L A+ GY V+ +G A++ + + L+++D+ MP +
Sbjct: 1 MKRTILIADDEKNIREGLGMAMELEGYAVLLAADGTEAWNLINSQTVDLVISDLRMPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL ++ + P L V+ +TG + + ++KP +L L V R L
Sbjct: 61 GEELLKKISGAYPRLPVVILTGHGTIESAVTAMRDGAVDFITKPVNLDRLTLLVKRSLDN 120
Query: 121 KN 122
++
Sbjct: 121 RD 122
>gi|325925213|ref|ZP_08186624.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|325544380|gb|EGD15752.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
Length = 238
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ G + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 126
>gi|308070352|ref|YP_003871957.1| sensory transduction protein [Paenibacillus polymyxa E681]
gi|305859631|gb|ADM71419.1| Hypothetical sensory transduction protein [Paenibacillus polymyxa
E681]
Length = 232
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ++L+ +D+ +R+ + L G V+ NG A + E PF L+L DI+M ++
Sbjct: 1 MSKPRVLVVDDERTVRKLIKTVLEADGMVVLQAENGTEAMRMISEGPFDLVLLDIMMEDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ ++ + ++F++G ++KPF L +V +
Sbjct: 61 DGYDVLGQSRNMGIHTPIIFLSGKKEDTDQIIGFGLGADAYITKPFSPPVLCAQVKNQIK 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|260550399|ref|ZP_05824610.1| two-component system response regulator [Acinetobacter sp. RUH2624]
gi|260406505|gb|EEW99986.1| two-component system response regulator [Acinetobacter sp. RUH2624]
Length = 247
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|258514099|ref|YP_003190321.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum acetoxidans DSM 771]
gi|257777804|gb|ACV61698.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum acetoxidans DSM 771]
Length = 448
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D++ M L +AL GY+V++ G +E S+++ D+ +P++D
Sbjct: 1 MIPRILVIDDEEKMCWALDRALSHEGYQVITSTEGLQGIALAQEIEPSIVILDLWLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E R+ E++ + V+ +T + ++ ++KPF L +L + + L
Sbjct: 61 GMEALRKIKEINAGMPVIMLTAHGTIETAIEAMKLGANDYITKPFKLDELKVLLKQAL 118
>gi|226315460|ref|YP_002775356.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
gi|226098410|dbj|BAH46852.1| two-component hybrid sensor and regulator [Brevibacillus brevis
NBRC 100599]
Length = 1024
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN++ I++ +DD L K L YEV + + A + P L+++D++MP
Sbjct: 693 MNRRARIIVVDDDSINLNILSKMLESDQYEVSTATSAQQALSILERNPVDLVISDVMMPH 752
Query: 59 MDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ G EL R E +L V+ +T + + KP +L V
Sbjct: 753 VSGYELTRIIRERFSVLELPVLLLTARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKA 812
Query: 117 L 117
L
Sbjct: 813 L 813
>gi|190350980|gb|ACE75886.1| CovR [Streptococcus pyogenes]
Length = 228
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLVRIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|189459945|ref|ZP_03008730.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136]
gi|189433318|gb|EDV02303.1| hypothetical protein BACCOP_00578 [Bacteroides coprocola DSM 17136]
Length = 1345
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ +M L +A + VV ++ A +V+ + L++TD++MP +DG
Sbjct: 1086 KHKILIVDDNTEMLMLLQEAFSDK-FRVVVAHDAEQALKEVKNDIPMLIVTDVMMPGIDG 1144
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL RR + + V+ ++ + + KPF++ L V RL+
Sbjct: 1145 FELTRRLKQNKHTMSVPVVILSAKNSSQEKIAGLDAGADAYIGKPFNIDYLKAVVERLIE 1204
Query: 120 IKN 122
++
Sbjct: 1205 NRS 1207
>gi|187777750|ref|ZP_02994223.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
15579]
gi|187774678|gb|EDU38480.1| hypothetical protein CLOSPO_01342 [Clostridium sporogenes ATCC
15579]
Length = 217
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ ED +R + L AGYEV+ ++G A + + F ++L DI++P++DG
Sbjct: 2 KKVLVVEDQIAIRELIAINLEMAGYEVIEASDGEMAVNYIENTYFDIILLDIMLPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T V ++KPF +L+ + +L
Sbjct: 62 SIISKIK--GKGIPVIFVTAKDDVLDRVKGLKLGADDYITKPFESIELLARIEAVLRR 117
>gi|187935582|ref|YP_001887366.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum B str. Eklund 17B]
gi|187723735|gb|ACD24956.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum B str. Eklund 17B]
Length = 242
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ ED+ + L AL K +EV NG SA + E L+L DI++P++ G
Sbjct: 3 KKRILVVEDEFSINDTLKFALSKENFEVKGAYNGESALKLLEEFQPHLVLLDIMLPDISG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + ++ V+ +T V ++KPF +R+++ +N +
Sbjct: 63 FELCKSISQKFY---VIMLTARDDVIDKILGMEIGADDYITKPFEIREVIARINAIFR 117
>gi|162451119|ref|YP_001613486.1| response regulator/GGDEF domain-containing protein [Sorangium
cellulosum 'So ce 56']
gi|161161701|emb|CAN93006.1| response regulator/GGDEF domain protein [Sorangium cellulosum 'So
ce 56']
Length = 391
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++A+DD R+ L+ L KAG++V + ++G A + + L+L DIVMP + G+E
Sbjct: 25 RIVVADDDRLARQMLVSILQKAGFQVEAVDDGQEAIELIGRGGVDLVLLDIVMPRLTGLE 84
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + L V+ +T + A + + KPF +L+ V +L IK
Sbjct: 85 ACRLLKSMTSESFLPVVLVTVKSDTANRVEGLKIGADDYVCKPFEEEELLARVGAMLRIK 144
>gi|188580216|ref|YP_001923661.1| transcriptional regulator [Methylobacterium populi BJ001]
gi|179343714|gb|ACB79126.1| two component transcriptional regulator, winged helix family
[Methylobacterium populi BJ001]
Length = 229
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 58/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +D+ +R+ L L GY VV + +A D++ E L++ D+ +P+M
Sbjct: 1 MSPTILVIDDEPPIRKLLRMGLATQGYAVVEAADARTALDRLGRERVDLVILDLGLPDMR 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L R PD V+ ++ A ++ ++KPF + +L+ + L
Sbjct: 61 GHDLLRAIRTGHPDRPVVVLSSRDDEAGKVEALDLGADDYVTKPFGMAELLARLRTALRH 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|167034724|ref|YP_001669955.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166861212|gb|ABY99619.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 231
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ G + L++ D+ +P+
Sbjct: 1 MSQSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGEEGLAQAALGKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|123441447|ref|YP_001005434.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122088408|emb|CAL11200.1| two-component system response regulator [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 239
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DG
Sbjct: 11 SGTVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R D+ +M +T + KP+ R++V V +L
Sbjct: 71 ISICREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|119944067|ref|YP_941747.1| two component transcriptional regulator, winged helix family
protein [Psychromonas ingrahamii 37]
gi|119862671|gb|ABM02148.1| two component transcriptional regulator, winged helix family
[Psychromonas ingrahamii 37]
Length = 230
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++ L + L + Y V + ++G + E + + D+ +P++DGI
Sbjct: 2 RILLVEDDISLQSNLKQHLIASHYRVDAASDGEEGLFQGIEYNYDAAIIDLGLPKIDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E + + ++ +T + + L KPF+ +LV +N L+
Sbjct: 62 VITRLREKNRNFPILILTARDSWQDKVEGLDAGADDYLCKPFYPEELVARLNALIRR 118
>gi|83594517|ref|YP_428269.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83577431|gb|ABC23982.1| two component transcriptional regulator, winged helix family
[Rhodospirillum rubrum ATCC 11170]
Length = 229
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L + L +AG+ V ++G A EPF ++ D+ +P +DGI
Sbjct: 2 RVLLVEDEPTLALTLRRVLERAGFAVDLADDGEEALFLGETEPFDAVVLDLGLPRLDGIG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T ++KPF + ++V + L+
Sbjct: 62 VLRRWRAAGIGVPVLILTARGGWPEKVAGFEAGADDYVTKPFEMEEVVLRLKALIRR 118
>gi|29347045|ref|NP_810548.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29338943|gb|AAO76742.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1321
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ D+ FL KALG+ +++ ++G A ++ ++++D++MP M+G EL
Sbjct: 1063 ILVVDDNPDLTDFLKKALGEYFKRILTASDGVEALQLIKSHTPDIIVSDVMMPRMNGYEL 1122
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ +T L+KPF + L+ + L +
Sbjct: 1123 CKNIKEDIAISHIPVILLTARDDKQSQMSGYKNGADAYLTKPFEVEMLMELIRNRLKNR 1181
>gi|27375415|ref|NP_766944.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
gi|27348552|dbj|BAC45569.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 324
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL EDD + ++ L G+EV +G D+ R ++ D ++P MD
Sbjct: 99 MN-RILLIEDDAETAEAIVAELADRGFEVQWAGDGVDGLDRARTSSPDAMIVDRMLPGMD 157
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + V+ ++ AV L+KPF + +LV + LL
Sbjct: 158 GLAVIEALRKDQVRTPVLVLSALGAVDDRVRGLRMGGDDYLTKPFAIIELVARIEALLRR 217
>gi|51597134|ref|YP_071325.1| DNA-binding transcriptional regulator BaeR [Yersinia
pseudotuberculosis IP 32953]
gi|153949110|ref|YP_001400191.1| BaeR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|170023569|ref|YP_001720074.1| DNA-binding transcriptional regulator BaeR [Yersinia
pseudotuberculosis YPIII]
gi|186896226|ref|YP_001873338.1| DNA-binding transcriptional regulator BaeR [Yersinia
pseudotuberculosis PB1/+]
gi|51590416|emb|CAH22056.1| two-component system response regulator [Yersinia
pseudotuberculosis IP 32953]
gi|152960605|gb|ABS48066.1| transcriptional regulatory protein BaeR [Yersinia
pseudotuberculosis IP 31758]
gi|169750103|gb|ACA67621.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186699252|gb|ACC89881.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
Length = 239
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DGI L
Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGAEVVATVRQTPPAIILLDLMLPGSDGITL 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ ++ +T + KP+ R++V V +L
Sbjct: 74 CREIR-RFSDIPIVMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|319640287|ref|ZP_07995012.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317388062|gb|EFV68916.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1346
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1208
Query: 120 IK 121
+
Sbjct: 1209 SR 1210
>gi|116073926|ref|ZP_01471188.1| two-component response regulator [Synechococcus sp. RS9916]
gi|116069231|gb|EAU74983.1| two-component response regulator [Synechococcus sp. RS9916]
Length = 265
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD DMR + L G++V ++G + L+L D+++P++D
Sbjct: 1 MKPCILLIEDDGDMRELVGGHLEHNGFDVQRADDGIKGQALALQYTPDLILLDLMLPKVD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ L +R E + ++ +T L+KPF L +L V LL
Sbjct: 61 GLTLCQRLRRDERTAGIPILMLTALGGTKDKVSGFNSGADDYLTKPFDLEELQVRVKALL 120
Query: 119 TIKN 122
+
Sbjct: 121 RRSD 124
>gi|13177580|gb|AAK14820.1| RprY [Bacteroides fragilis]
Length = 236
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + + + + L + D++MP+
Sbjct: 4 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGFKAFLKNKYDLCVFDVMMPK 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 64 KDGFTLAQEVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 123
Query: 119 TI 120
Sbjct: 124 RR 125
>gi|294777704|ref|ZP_06743155.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294448772|gb|EFG17321.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1346
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1208
Query: 120 IK 121
+
Sbjct: 1209 SR 1210
>gi|150003414|ref|YP_001298158.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931838|gb|ABR38536.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1346
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1090 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1148
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1149 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1208
Query: 120 IK 121
+
Sbjct: 1209 SR 1210
>gi|126650201|ref|ZP_01722429.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
gi|126592851|gb|EAZ86833.1| hypothetical protein BB14905_17645 [Bacillus sp. B14905]
Length = 1021
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ R + L Y++V+ +G A ++ + L+++D++MP+M G E
Sbjct: 689 RILVVDDEPINLRVVETILANEQYDIVTVTSGLDALVSIQSHEWDLVISDVMMPKMSGYE 748
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + DL ++ +T + ++KP +L + V L+ +K
Sbjct: 749 LVRLIRKQFSITDLPILLLTARSQPQNLEKGFLAGANDYVTKPVDALELRSRVAALIKVK 808
>gi|159900821|ref|YP_001547068.1| response regulator receiver modulated diguanylate cyclase
[Herpetosiphon aurantiacus ATCC 23779]
gi|159893860|gb|ABX06940.1| response regulator receiver modulated diguanylate cyclase
[Herpetosiphon aurantiacus ATCC 23779]
Length = 552
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 2 NQKI---LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
+ I L+ EDD ++++ + + L AGY + +G +PF L++ D+++P+
Sbjct: 235 KKTIAELLVIEDDQEIQQVVSQGLSNAGYSITVTTSGEEGLRLAMRQPFDLIMLDLMLPD 294
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+DG + R+ E +M ++ ++KPF +L+ ++
Sbjct: 295 IDGWTVLRQLRERTQTATTPLMLVSALGKPEEKVRGFQLGADDYITKPFDWNELLARISA 354
Query: 117 LLTIK 121
L +
Sbjct: 355 SLRRR 359
Score = 71.7 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED R + L ++GY VV+ +G + D R ++ D+++P ++G ++
Sbjct: 116 VLLIEDSQTYRAVVSARLTQSGYNVVTAPDGMAGLDLARAYQPVAIILDLMLPHLNGEQV 175
Query: 65 ARRATE--LDPDLKVMFITGF 83
A E + ++ TG
Sbjct: 176 AFVLGEDPETKHIPIIIYTGL 196
>gi|78221749|ref|YP_383496.1| two component heavy metal response transcriptional regulator
[Geobacter metallireducens GS-15]
gi|78193004|gb|ABB30771.1| two component heavy metal response transcriptional regulator,
winged helix family [Geobacter metallireducens GS-15]
Length = 223
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K + G+ + NG R E + L++ DI++P DG
Sbjct: 2 RILIIEDEKKAAAYLQKGFTENGFSADTAQNGEDGLHLARTEAYDLVILDIMLPGRDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V++++ AV L KPF +L+ +L
Sbjct: 62 VLEELRRGGSEVPVIYLSARDAVQDRVRGLELGADDYLVKPFAFSELLARARNILRR 118
>gi|325265898|ref|ZP_08132584.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
denitrificans ATCC 33394]
gi|324982536|gb|EGC18162.1| phosphate regulon transcriptional regulatory protein PhoB [Kingella
denitrificans ATCC 33394]
Length = 229
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +IL+ ED+ ++ + L +AG++V N +A D +R L++ D ++P+
Sbjct: 1 MDKARILVVEDELPIQTLIAFNLQEAGFDVCCAQNVQAASDILRARLPDLMVLDWMLPDC 60
Query: 60 DGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L ++ +T + A A L+KPF R+LV ++
Sbjct: 61 DGVSWIAELRRQTATAALPIILLTARSEDADKELGFAQGADDYLTKPFSPRELVARIHAR 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|284066971|gb|ADB77766.1| AdeR [Acinetobacter genomosp. 13]
Length = 247
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLRREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|265753055|ref|ZP_06088624.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
gi|263236241|gb|EEZ21736.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 3_1_33FAA]
Length = 1351
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1213
Query: 120 IK 121
+
Sbjct: 1214 SR 1215
>gi|150025465|ref|YP_001296291.1| two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
gi|149772006|emb|CAL43482.1| Two-component system response regulatory protein [Flavobacterium
psychrophilum JIP02/86]
Length = 227
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL EDD+ + L + Y + CN+G A D + PF + + DI+MP++DG E
Sbjct: 5 KILYTEDDETLAFLTKDNLEQNNYNITHCNDGQIALDTFKNNPFDICILDIMMPKIDGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA +L+ ++ ++F++ L KPF + +L+ ++ L
Sbjct: 65 LATAIRKLNTNIPILFLSAKTLKEDRIKGLKLGADDYLIKPFSIEELLLKIEIFLKR 121
>gi|56413910|ref|YP_150985.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197362833|ref|YP_002142470.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56128167|gb|AAV77673.1| response regulator [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|197094310|emb|CAR59820.1| response regulator [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
Length = 226
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYMVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R V+ +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PVICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|90424523|ref|YP_532893.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90106537|gb|ABD88574.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 238
Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++R+ L + + + G+ V + A +++ L++ D+++P+ G++L
Sbjct: 6 ILIVDDDLEIRKLLARYIKEQGFRVQLASRCADVRERIATSQIDLIVLDVMLPDGSGLDL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T L KPF+ R+LV + +L
Sbjct: 66 CRDLRSERSKIPVILLTALKEEVDRIVGLEIGADDYLGKPFNPRELVARIRAVLRR 121
>gi|325840156|ref|ZP_08166964.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
gi|325490395|gb|EGC92718.1| response regulator receiver domain protein [Turicibacter sp. HGF1]
Length = 218
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ EDD + R + L AGY S +G A++++++E F L+L D+++P MD
Sbjct: 1 MEHKVLIVEDDLSIARLIKLNLNLAGYLTESVEDGLLAFERIQKEKFDLILLDVMIPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G +L + L ++ V+F+T + D + KPF +L+ + +L
Sbjct: 61 GFKLMEKIRPL--NIPVIFLTAKTSTMDKVDGLRLGADDYMVKPFEAIELLARIEAVLRR 118
>gi|312131853|ref|YP_003999193.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
gi|311908399|gb|ADQ18840.1| two component transcriptional regulator, winged helix family
[Leadbetterella byssophila DSM 17132]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL EDD ++ + +L + G +++ ++G A+ ++E F L L D+++PE+DG
Sbjct: 3 KILYVEDDPNLAFVVKDSLEEIGDFDISHFSDGKEAWKVFKKEKFDLCLLDVMLPELDGF 62
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA + E + + ++F++ A ++KPF + +L ++ L
Sbjct: 63 SLAEKIREQNAHIPIIFLSAKALPEDRIQGLKVGGDDYITKPFSIEELELKIKVFLKR 120
>gi|312961965|ref|ZP_07776462.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas fluorescens WH6]
gi|311283775|gb|EFQ62359.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas fluorescens WH6]
Length = 223
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ +L+ L + GY +G + E PF +++ D++MP+MD
Sbjct: 1 MN--ILVVEDEPKAGNYLLNGLQELGYSASLARDGVDGLHQALETPFDVIVLDVMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + D V+F+T +A L KPF +LV + L
Sbjct: 59 GWEVLRRLRKET-DTPVLFLTARDDIADRIKGLELGADDYLIKPFSFAELVARLRTLTRR 117
>gi|265765004|ref|ZP_06093279.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 2_1_16]
gi|263254388|gb|EEZ25822.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 2_1_16]
Length = 1329
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ D+ ++L ++V+ NG A + + E ++++D++MPEM+G+E
Sbjct: 1080 TILLVEDNVDLLNLTRESLSTW-FKVLKAQNGRQALEVLANETVDVIVSDVMMPEMNGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF +R L ++ LL ++
Sbjct: 1139 LTAKVKSDIEYSHIPVILLTAKTTLEAKVEGFECGADVYIEKPFSIRQLRKQIENLLKLR 1198
>gi|260577913|ref|ZP_05845843.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
gi|258603933|gb|EEW17180.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC
43734]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD + L L G+ V +G A E L+L D+++P M+GI+
Sbjct: 7 KILVVDDDPAIAEMLTIVLQGEGFRTVVVGDGVEAVKAAEEHNPDLILLDVMLPGMNGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ + E + ++ +T + KPF ++
Sbjct: 67 VCKAIRE-TSTVPIVMLTARTDTVDVVLGLESGADDYVHKPFKPKE 111
>gi|256545445|ref|ZP_05472807.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
gi|256398841|gb|EEU12456.1| transcriptional regulator FeuP [Anaerococcus vaginalis ATCC 51170]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + K+L AGYEV S +G A + + E + L++ D+ +P MDG+E
Sbjct: 2 KILIVEDEKILNNTINKSLKDAGYEVESAFDGFDAMEMIEIESYDLIVLDLNLPNMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + KV+ ++ + + + L KPFHL +L V LT +N
Sbjct: 62 ILKNLRKEDVETKVLILSARSQIQDKVEGLDAGANDFLQKPFHLDELKARVRS-LTRRN 119
>gi|253564324|ref|ZP_04841781.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_2_5]
gi|251948100|gb|EES88382.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_2_5]
gi|301161394|emb|CBW20934.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis 638R]
Length = 1329
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ D+ ++L ++V+ NG A + + E ++++D++MPEM+G+E
Sbjct: 1080 TILLVEDNVDLLNLTRESLSTW-FKVLKAQNGRQALEVLANETVDVIVSDVMMPEMNGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF +R L ++ LL ++
Sbjct: 1139 LTAKVKSDIEYSHIPVILLTAKTTLEAKVEGFECGADVYIEKPFSIRQLRKQIENLLKLR 1198
>gi|251788984|ref|YP_003003705.1| winged helix family two component transcriptional regulator
[Dickeya zeae Ech1591]
gi|247537605|gb|ACT06226.1| two component transcriptional regulator, winged helix family
[Dickeya zeae Ech1591]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ +L KAL + G+ V +G +A +++E ++L++ D+ +P +DG+
Sbjct: 2 RLLLVEDHPELAHWLKKALSEVGFAVDLVGDGVAADQLLQQEAYTLVVLDVSLPRLDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T A VA L+KPF L +L + LL
Sbjct: 62 LLARLRKRGQNLPVLLLTARAEVADRVKGLNLGADDYLTKPFELAELEARLRALLRR 118
>gi|239944236|ref|ZP_04696173.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239990692|ref|ZP_04711356.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
gi|291447708|ref|ZP_06587098.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
gi|291350655|gb|EFE77559.1| two-component system response regulator [Streptomyces roseosporus
NRRL 15998]
Length = 245
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ DI++P DG+
Sbjct: 19 RRVLVVEDDATIVDAISARLRAEGFLVQTALDGPAAVDAAEAWQPDLMVLDIMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 79 EVCRRVQAARP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 135
>gi|227505512|ref|ZP_03935561.1| two component system response regulator [Corynebacterium striatum
ATCC 6940]
gi|227197876|gb|EEI77924.1| two component system response regulator [Corynebacterium striatum
ATCC 6940]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+E ++ +G A +E L+L D+++P M+
Sbjct: 1 MAPKILVVDDDPAISEMLTIVLEAEGFEPIAVTDGNEAVPAFQENDPDLILLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R + + ++ +T ++KPF ++
Sbjct: 61 GVDICRAIR-TESSVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108
>gi|217970145|ref|YP_002355379.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
gi|217507472|gb|ACK54483.1| multi-sensor hybrid histidine kinase [Thauera sp. MZ1T]
Length = 833
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 11/125 (8%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L G+ V NNG A + + F ++L D+ MP M GIE
Sbjct: 573 VLVVEDNPVNQTVAKRMLEHVGHSVTVANNGEEALEAIDNRHFDVVLMDVQMPVMGGIEA 632
Query: 65 ARRATEL-----------DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
+ + ++ +T A ++KP L
Sbjct: 633 TQAIRAREARRSWVLAGDWKPVPIIAMTAHAMEGDRERCLQAGMDDYVAKPVRPEALFAA 692
Query: 114 VNRLL 118
+ R+L
Sbjct: 693 IERVL 697
Score = 57.5 bits (139), Expect = 7e-07, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNG---ASAYDKVR--EEPFSLLLTDIVMPE 58
++L+A + FL L +A + +G A + +PF+ LL D +PE
Sbjct: 418 RVLVASANAAFADFLCATLQEAALRAEAACSGVAVEQALARAADGSDPFAFLLMDADLPE 477
Query: 59 MDGIELARRATELDPDL-KVM-FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G LA+R P +++ + + L+KPF DL+ +
Sbjct: 478 PGGFALAQRFAAAWPRPDRIIPMMASHSQRNDALRCEELGLGYRLAKPFSAEDLLAVLR 536
>gi|187778014|ref|ZP_02994487.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
15579]
gi|187774942|gb|EDU38744.1| hypothetical protein CLOSPO_01606 [Clostridium sporogenes ATCC
15579]
Length = 223
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|150008544|ref|YP_001303287.1| two-component system response regulator [Parabacteroides distasonis
ATCC 8503]
gi|255014344|ref|ZP_05286470.1| two-component system response regulator [Bacteroides sp. 2_1_7]
gi|256841439|ref|ZP_05546946.1| phosphate regulon transcriptional regulatory protein PhoB
[Parabacteroides sp. D13]
gi|262383394|ref|ZP_06076530.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298376189|ref|ZP_06986145.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
gi|301309445|ref|ZP_07215387.1| DNA-binding response regulator [Bacteroides sp. 20_3]
gi|149936968|gb|ABR43665.1| two-component system response regulator [Parabacteroides distasonis
ATCC 8503]
gi|256737282|gb|EEU50609.1| phosphate regulon transcriptional regulatory protein PhoB
[Parabacteroides sp. D13]
gi|262294292|gb|EEY82224.1| two-component system response regulator [Bacteroides sp. 2_1_33B]
gi|298267226|gb|EFI08883.1| DNA-binding response regulator [Bacteroides sp. 3_1_19]
gi|300832534|gb|EFK63162.1| DNA-binding response regulator [Bacteroides sp. 20_3]
Length = 226
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ +R ++++L K Y V S ++ A K+ + + ++ DI++P G+
Sbjct: 2 KILVVEDENALREVIVRSLEKERYVVESASSFREASLKINDYDYDCIVLDIMLPGGSGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + L ++ I+ ++ L+KPFHL +L + ++ K
Sbjct: 62 LLKELRALRKKDSIIIISAKDSIEDKVTGLDLGADDYLTKPFHLAELNARIKSVIRRK 119
>gi|170727718|ref|YP_001761744.1| two component transcriptional regulator [Shewanella woodyi ATCC
51908]
gi|169813065|gb|ACA87649.1| two component transcriptional regulator, winged helix family
[Shewanella woodyi ATCC 51908]
Length = 230
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD +++ L + L A Y V ++G + E + + D+ +P+MDGI
Sbjct: 2 RILLVEDDIELQTNLKQHLLDANYTVDVASDGEIGLFQGCEYRYDAGIIDVGLPKMDGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E + D ++ +T + + L+KPF +LV + L+
Sbjct: 62 LITTLREKEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFQPEELVARLKALIRR 118
>gi|169795908|ref|YP_001713701.1| two-component response regulator [Acinetobacter baumannii AYE]
gi|213157394|ref|YP_002319439.1| AdeR [Acinetobacter baumannii AB0057]
gi|301344928|ref|ZP_07225669.1| AdeR [Acinetobacter baumannii AB056]
gi|301509916|ref|ZP_07235153.1| AdeR [Acinetobacter baumannii AB058]
gi|301595364|ref|ZP_07240372.1| AdeR [Acinetobacter baumannii AB059]
gi|332854443|ref|ZP_08435375.1| response regulator receiver domain protein [Acinetobacter baumannii
6013150]
gi|332868449|ref|ZP_08438162.1| response regulator receiver domain protein [Acinetobacter baumannii
6013113]
gi|88758852|emb|CAJ77842.1| AdeR [Acinetobacter baumannii AYE]
gi|169148835|emb|CAM86704.1| two-component response regulator [Acinetobacter baumannii AYE]
gi|193077374|gb|ABO12180.2| AdeR [Acinetobacter baumannii ATCC 17978]
gi|213056554|gb|ACJ41456.1| AdeR [Acinetobacter baumannii AB0057]
gi|306485917|gb|ADM92605.1| AdeR [Acinetobacter baumannii]
gi|332728019|gb|EGJ59411.1| response regulator receiver domain protein [Acinetobacter baumannii
6013150]
gi|332733374|gb|EGJ64560.1| response regulator receiver domain protein [Acinetobacter baumannii
6013113]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|60679869|ref|YP_210013.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis NCTC 9343]
gi|60491303|emb|CAH06051.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis NCTC 9343]
Length = 1329
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ D+ ++L ++V+ NG A + + E ++++D++MPEM+G+E
Sbjct: 1080 TILLVEDNVDLLNLTRESLSTW-FKVLKAQNGRQALEVLANETVDVIVSDVMMPEMNGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF +R L ++ LL ++
Sbjct: 1139 LTAKVKSDIEYSHIPVILLTAKTTLEAKVEGFECGADVYIEKPFSIRQLRKQIENLLKLR 1198
>gi|53711619|ref|YP_097611.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides fragilis YCH46]
gi|52214484|dbj|BAD47077.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides fragilis YCH46]
Length = 1329
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ D+ ++L ++V+ NG A + + E ++++D++MPEM+G+E
Sbjct: 1080 TILLVEDNVDLLNLTRESLSTW-FKVLKAQNGRQALEVLANETVDVIVSDVMMPEMNGLE 1138
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + V+ +T + + + KPF +R L ++ LL ++
Sbjct: 1139 LTAKVKSDIEYSHIPVILLTAKTTLEAKVEGFECGADVYIEKPFSIRQLRKQIENLLKLR 1198
>gi|332711348|ref|ZP_08431280.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
gi|332349897|gb|EGJ29505.1| diguanylate cyclase GGDEF domain protein [Lyngbya majuscula 3L]
Length = 579
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED++ +R +I+ L G++V+ NG + + L++ D++MPEMD
Sbjct: 1 MMRKILVIEDEEFVRENIIELLDAEGFDVIGAENGRVGVNLAKGTIPDLIICDVMMPEMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + + + +F+T AA ++KPF +L+ + L
Sbjct: 61 GYSVLTSLRQDSMMATVPFIFLTAKAAKNDFRQGMELGADDYITKPFTRAELLGSIASRL 120
Query: 119 TIK 121
K
Sbjct: 121 KKK 123
>gi|326692153|ref|ZP_08229158.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE + +G A K+ P +L++ D++MP M+G+
Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMATDGKEALSKLNTNPDIALMILDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVVKTVRK-DSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|323483517|ref|ZP_08088904.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323690977|ref|ZP_08105263.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
gi|323403215|gb|EGA95526.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14163]
gi|323504916|gb|EGB20692.1| winged helix family Two component transcriptional regulator
[Clostridium symbiosum WAL-14673]
Length = 237
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M K ILL ED+ ++ F+ +L Y++ ++G A + + L+L D+ +P+
Sbjct: 1 MTHKTSILLVEDEKNICDFISTSLSAQDYKITETHSGKEALPIITSQCPDLILLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ ++ + ++ I+ + L+KP +L+ + L
Sbjct: 61 MDGMEIIKQVR-TWASIPIIVISARTQEQEKVKALDLGADDYLTKPIGTSELLARIRTAL 119
Query: 119 TIKN 122
N
Sbjct: 120 RHSN 123
>gi|294810650|ref|ZP_06769299.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|294442119|gb|EFG10937.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
Length = 1321
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187
Query: 121 K 121
+
Sbjct: 1188 R 1188
>gi|227524667|ref|ZP_03954716.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227088151|gb|EEI23463.1| response regulator [Lactobacillus hilgardii ATCC 8290]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L GY+ NG + +E F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E + ++ +T +V + KPF + +L+ + LL
Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118
>gi|168215939|ref|ZP_02641564.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
8239]
gi|182381840|gb|EDT79319.1| DNA-binding response regulator KdpE [Clostridium perfringens NCTC
8239]
Length = 237
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F+ L Y+ + NG+ + +++ D+ +P+MD
Sbjct: 1 MKPAILVIEDEKAIRNFVTATLEINSYQCHTAFNGSQGMILAISKRPDIIILDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ E + ++ ++ + ++ L+KPF + +L+ + +
Sbjct: 61 GIEIIKKVRE-WSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRK 119
Query: 121 KN 122
N
Sbjct: 120 MN 121
>gi|162295961|gb|ABX83929.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|150015325|ref|YP_001307579.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149901790|gb|ABR32623.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ D+R + + K YEV ++G A + E L+L DI+MP +D
Sbjct: 1 MN--ILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + ++ + + ++ IT + + L KP +L V L
Sbjct: 59 GISVIQKVRAI-STIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRR 117
>gi|120405713|ref|YP_955542.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958531|gb|ABM15536.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 230
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + R L L GYEV + +GA A + +++ D+ +P+M GIE
Sbjct: 7 RVLVIDDEPQILRALRINLSVRGYEVHTAASGAEALRMAADHKPDVVVLDLGLPDMTGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ ++ + A ++ ++KPF + + + + +
Sbjct: 67 VLAGLRG-WLSAPVIVLSARSDSADKVEALDAGADDYVTKPFGMDEFLARLRAAVRR 122
>gi|38230268|gb|AAR14189.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|16611832|gb|AAL27375.1|AF426171_6 HydG [Yersinia pestis]
Length = 463
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 14 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 74 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 133
Query: 122 N 122
+
Sbjct: 134 H 134
>gi|330875757|gb|EGH09906.1| DNA-binding response regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330965575|gb|EGH65835.1| DNA-binding response regulator [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 222
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + A + L+KPFH +L + LL +
Sbjct: 62 VLQQWRGNGLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|330508123|ref|YP_004384551.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP-6]
gi|328928931|gb|AEB68733.1| two-component hybrid sensor and regulator [Methanosaeta concilii
GP-6]
Length = 808
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ ++ + K L K GY NG + + + ++L DI MPEMDG++
Sbjct: 674 RILVAEDNIINQKVIKKMLHKLGYRADVAANGLEVLVALDRQDYDVILMDIQMPEMDGLD 733
Query: 64 LARRATELDPDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
AR+ E P L ++ IT FA +SKP +L +L +
Sbjct: 734 AARKIRETRPTLPKIIAITAFAMEGDKEKCIDSGMDGYISKPVNLEELRAILR 786
>gi|310827284|ref|YP_003959641.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
gi|308739018|gb|ADO36678.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGIE 63
IL+ EDD + R + L AG+E V NG A D P L+L DI++P+ +G E
Sbjct: 4 ILIVEDDKKISRIIELQLNHAGFETVKAFNGREAIDVFNNTPDIGLVLLDIMLPQFNGYE 63
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E P+L V+F+T + ++KPF +L+ + L K
Sbjct: 64 VLKYIRERSPELPVIFLTAKDDTGDVVNGLNLGADDYITKPFIFDELLARIKANLRKK 121
>gi|294055543|ref|YP_003549201.1| two component transcriptional regulator, winged helix family
[Coraliomargarita akajimensis DSM 45221]
gi|293614876|gb|ADE55031.1| two component transcriptional regulator, winged helix family
[Coraliomargarita akajimensis DSM 45221]
Length = 222
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++R +++ L + G+ C +G K + +L DI++P+++G E
Sbjct: 2 RVLVIEDEAELRETVVETLREEGFATDYCGDGEEGLYKALHWDYDAILLDIMLPKINGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + VM +T + L KPF L +++ +
Sbjct: 62 VLKRIRDAQKETPVMMLTARDGIDDRIKGLNQGADDYLPKPFDLAEMIARTRAIARR 118
>gi|77164200|ref|YP_342725.1| two comoponent transcriptional regulator [Nitrosococcus oceani ATCC
19707]
gi|76882514|gb|ABA57195.1| two component transcriptional regulator, winged helix family
[Nitrosococcus oceani ATCC 19707]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILLA+DD ++ L + L G++V + G SA ++ R + L + D++MP+++
Sbjct: 1 MN-RILLADDDIELCGMLKQYLEVEGFQVGMAHGGESALNQARTGGYDLAVLDVMMPQLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + D + V+ +T + L KP + R LV + +L
Sbjct: 60 GFDVLRELRK-DSLVPVLMLTARGEDVDSIIGLELGADDYLPKPCNPRVLVARIRAILRR 118
>gi|89097111|ref|ZP_01170001.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
gi|89087934|gb|EAR67045.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911]
Length = 227
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ D+ L +G++ +NG + +SL+L D+++P +DG
Sbjct: 2 KRILIIEDETDIAELERDYLEVSGFDSDIASNGEEGLRLAKTNEYSLILLDLMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+L R E D+ ++ +T + KPF+ +LV V
Sbjct: 62 QLCREMREFL-DIPILMVTARKEDIDKIRGFDRGADDYIVKPFNPNELVARVKAH 115
>gi|186681390|ref|YP_001864586.1| response regulator receiver modulated metal dependent
phosphohydrolase [Nostoc punctiforme PCC 73102]
gi|186463842|gb|ACC79643.1| response regulator receiver modulated metal dependent
phosphohydrolase [Nostoc punctiforme PCC 73102]
Length = 409
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D R + LG GYEV+ + G++ V ++ L+L D++MP MDG E
Sbjct: 96 KVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLVTQKQPDLILLDVMMPGMDGFE 155
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + V+FIT L+KPF +L V L+ K
Sbjct: 156 VCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQK 215
>gi|329769598|ref|ZP_08261002.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
gi|328838353|gb|EGF87962.1| hypothetical protein HMPREF0433_00766 [Gemella sanguinis M325]
Length = 238
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D++ +R+ LI L K GY V NG ++++ +S +L D+ +P ++
Sbjct: 1 MAERVLVIDDEERIRKLLIMYLEKEGYIVDEATNGQDGLERLKYMDYSCVLLDVHLPMLN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + V+ ++ A + + KPF R+L+ VN +L
Sbjct: 61 GKTILAELRK-TKATPVIIMSAQADEQSRVEGFELGADDYVIKPFSPRELMLRVNAILQR 119
>gi|323171415|gb|EFZ57062.1| transcriptional regulatory protein creB [Escherichia coli LT-68]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R+ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGVPVLDKARQLVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|309791249|ref|ZP_07685780.1| response regulator receiver modulated diguanylate cyclase
[Oscillochloris trichoides DG6]
gi|308226675|gb|EFO80372.1| response regulator receiver modulated diguanylate cyclase
[Oscillochloris trichoides DG6]
Length = 321
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
NQ IL+A+DD+ +R+ L+ L GY + NG+ + + LLL D++MP+MDG
Sbjct: 10 NQTILIADDDESIRQVLMILLRSVGYRIELVGNGSDLIQRAQVIMPHLLLIDVMMPDMDG 69
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E R+ + + +T + KPF+ +L+ V L
Sbjct: 70 YEALRQLRNDTRTAHIPAIMLTARGEPKDLVHGFDSGADDYVIKPFNTVELIARVRSQLR 129
Query: 120 I 120
Sbjct: 130 R 130
>gi|297519761|ref|ZP_06938147.1| nitrogen regulation protein NR(I) [Escherichia coli OP50]
Length = 280
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|302525129|ref|ZP_07277471.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302434024|gb|EFL05840.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 232
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 22/121 (18%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ + R L L GY+V++ ++G +A V E +++ D+ +P++DG
Sbjct: 6 TATVLVVDDEPQIVRALRINLNARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ + ++ ++ A + ++KPF + +L+ + +
Sbjct: 66 TEVIAGLRG-WTTVPIIVLSARGDSADKVQALDAGADDYVTKPFGMDELLARLRAAVRRS 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|227329793|ref|ZP_03833817.1| DNA-binding transcriptional activator KdpE [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 226
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++RRF+ +AL G V + L++ D+ +P+ +
Sbjct: 1 MQATILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGLLEAATRKPDLIILDLGLPDGN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + L V+ ++ D+ L+KPF + +L+ + L
Sbjct: 61 GIDYIRDLRQ-WSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR 119
Query: 121 KN 122
+
Sbjct: 120 HS 121
>gi|124009577|ref|ZP_01694251.1| adenylate cyclase [Microscilla marina ATCC 23134]
gi|123984816|gb|EAY24791.1| adenylate cyclase [Microscilla marina ATCC 23134]
Length = 362
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M IL+ +D+ + L + L A + ++ NG A+D ++ L++ D +MP
Sbjct: 1 MKATILIVDDEVTNLKILREYLTTADQEFRILQATNGKQAFDIAQKADPDLVIMDWMMPV 60
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
M GI+ + E ++ V+ T + ++ + KP +L+ V
Sbjct: 61 MSGIDALKNIKTTESTQNIPVIMATAKTSAQDLKEALEAGAMDYVRKPIDKTELLARVRS 120
Query: 117 LLTIKN 122
+ + +
Sbjct: 121 AIQLSH 126
>gi|313158184|gb|EFR57589.1| putative response regulator ArlR [Alistipes sp. HGB5]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R +++ L + Y V + ASA DK+ + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLREIMVQTLRREQYVVEQAADYASALDKIAGYDYDCILLDIMLPDGSGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ I+ ++ + L KPFHL +L + ++
Sbjct: 62 LLEELKRQRRQAGIIIISARDSLDDKIEGLELGADDYLPKPFHLAELSARIRSVVRR 118
>gi|282862971|ref|ZP_06272031.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
gi|282561953|gb|EFB67495.1| GAF sensor hybrid histidine kinase [Streptomyces sp. ACTE]
Length = 1438
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+ +L+ +DD L L G V+ NG + +RE P L+L D++MPEMDG
Sbjct: 1309 RTVLVVDDDARNLYALSGILELHGINVLHAENGIEGIEALREHPGIDLILMDVMMPEMDG 1368
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E L ++ +T A S A + ++KP DL+ V R L
Sbjct: 1369 YTATMKIREVPAHATLPIVSVTAKAMPGDREKSLAAGASDYVTKPLDADDLIACVRRWLG 1428
Query: 120 IKN 122
++
Sbjct: 1429 RRS 1431
>gi|254881285|ref|ZP_05253995.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254834078|gb|EET14387.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1351
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1095 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1153
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1154 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1213
Query: 120 IK 121
+
Sbjct: 1214 SR 1215
>gi|255505684|ref|ZP_05347547.3| DNA-binding response regulator DltR [Bryantella formatexigens DSM
14469]
gi|255266531|gb|EET59736.1| DNA-binding response regulator DltR [Bryantella formatexigens DSM
14469]
Length = 248
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ ++ L +L K GY+ ++G S + + + ++L D+++P +
Sbjct: 20 MN--ILIIEDELHLQEALAASLKKEGYQTDCASDGISGLELALSDRYDVILLDLMLPGLG 77
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ ++ + + L+KPF +++L + + T
Sbjct: 78 GYQVLKQLRREKTESAVIILSAKSELEDKIAGLDFGADDYLTKPFQMKELFARIRAV-TR 136
Query: 121 KN 122
++
Sbjct: 137 RH 138
>gi|254413334|ref|ZP_05027105.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196179954|gb|EDX74947.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 864
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL +D D L + L GY++ NG A + P L+L DI+MP+MDG +
Sbjct: 12 TILTIDDTPDNLHLLTEMLSAQGYKIRIIPNGRLALKSIANNPPDLILLDIIMPDMDGYQ 71
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++ V+F++G + ++KPF +++++ V L ++
Sbjct: 72 VCQQLKASPKTQNIPVIFLSGLNETFDKVKAFEVGGVDYITKPFQVQEVLARVESQLRLQ 131
>gi|157736695|ref|YP_001489378.1| two-component response regulator [Arcobacter butzleri RM4018]
gi|157698549|gb|ABV66709.1| two-component response regulator [Arcobacter butzleri RM4018]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ EDD + FL K L + Y V NG + L+L DI++P +G
Sbjct: 3 SMKILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPVKNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ + + ++ +T ++ L+KPF +L+ + L I
Sbjct: 63 IEVCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRI 121
>gi|126699934|ref|YP_001088831.1| two-component response regulator [Clostridium difficile 630]
gi|255101465|ref|ZP_05330442.1| two-component response regulator [Clostridium difficile QCD-63q42]
gi|255307338|ref|ZP_05351509.1| two-component response regulator [Clostridium difficile ATCC 43255]
gi|115251371|emb|CAJ69203.1| Two-component response regulator [Clostridium difficile]
Length = 238
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD ++ + L + V+ +G A D + E L++ D++MP +D
Sbjct: 1 MNQNILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ + E ++ ++ ++ + ++KPF+ +L V L
Sbjct: 61 GLKTTLKIREKR-NIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRR 119
>gi|332186744|ref|ZP_08388486.1| response regulator [Sphingomonas sp. S17]
gi|332013077|gb|EGI55140.1| response regulator [Sphingomonas sp. S17]
Length = 230
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KIL+ EDD ++ K L +AGY V C +G E F L++ D ++P +D
Sbjct: 1 MSRKILIVEDDASTAAYVAKGLAEAGYAVEQCGDGRDGLFLASEGIFDLIIADRMLPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + V+ ++ A V D L KPF +L + L+
Sbjct: 61 GLAMVSAIRAAGISTPVLILSALATVDDRVDGLKAGADDYLCKPFSFAELSARIEALVRR 120
Query: 121 KN 122
+
Sbjct: 121 SD 122
>gi|325262811|ref|ZP_08129547.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
gi|324031905|gb|EGB93184.1| DNA-binding response regulator PhoP [Clostridium sp. D5]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ D+ R ++ L Y + SC +G +A D + + ++ DI+MP +DG+
Sbjct: 2 RILLAEDEPDLNRLIMDKLRAEHYSMDSCRDGRAALDYLAAAEYDAVILDIMMPVVDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ ++ V+ +T ++ L KPF +L+ + LL
Sbjct: 62 VLKKLRAQGKNIPVLLLTARDSIEDRVAGLDAGANDYLIKPFAFEELLARIRVLLR 117
>gi|319938402|ref|ZP_08012797.1| signal transduction regulator [Coprobacillus sp. 29_1]
gi|319806490|gb|EFW03154.1| signal transduction regulator [Coprobacillus sp. 29_1]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +I + EDD++++ + +L GY+V +N A + E+ L + D+++P+MD
Sbjct: 1 MNARIYVIEDDENIQEIVKLSLESNGYQVTLFDNAIDAIIAIHEDAPDLAIFDVMLPQMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI ++ E + + ++ ++ + + ++KPF + +L V LL
Sbjct: 61 GITAVKKIRETNTQMPILILSAKDSEIDKIHGLDSGSDDYMTKPFGVLELCARVRTLLRR 120
>gi|309774945|ref|ZP_07669963.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308917271|gb|EFP62993.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 233
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L YEV C +G S + +E F+L+L D+++P+ DG
Sbjct: 2 KRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ R + ++ ++ ++ + KPF+ +L+ V +
Sbjct: 62 QVCRNLRAV-KNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116
>gi|304394995|ref|ZP_07376879.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
gi|304357248|gb|EFM21611.1| two component transcriptional regulator, winged helix family
[Pantoea sp. aB]
Length = 246
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + + L K G +G + P L++ D++MP DG+
Sbjct: 6 HILIVDDDREIRSLIAEYLKKNGLRTTEVADGRQMRSFLDNMPVDLIVLDVMMPGDDGLT 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T + L KPF R+L+ + +L
Sbjct: 66 LCRELRSGKHKGTPVLMLTARSEETDRIIGLEMGADDYLVKPFVPRELLARIKAVLRR 123
>gi|302527275|ref|ZP_07279617.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302436170|gb|EFL07986.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 226
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDD + L AL G V +G A + ++L D+++P MD
Sbjct: 1 MTVRVLLVEDDALISEALSLALADQGCAVTQAASGEDALAMLESVSVDVVLLDLMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + DL V+ IT A ++KP +L + LL
Sbjct: 61 GLSVCHELRVRG-DLPVIIITARADSQDVIAGLEAGADDYVTKPLVAGELAARIRALLRR 119
>gi|237711636|ref|ZP_04542117.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
gi|229454331|gb|EEO60052.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 9_1_42FAA]
Length = 1356
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 3 QKIL-LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL + ED+ D+ +++++ +EV + NG ++ ++++DI+MP M+G
Sbjct: 1100 KRILLIVEDNRDICDYIVESFSD-DFEVRTAANGEQGLEQALGCIPDIIVSDIMMPVMNG 1158
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I + R+ E + ++ +T ++ + L+KPF L + ++ LL
Sbjct: 1159 IVMCRKLKEDLRTSHIPIILLTAKDSLQDKEEGYQVGADSYLTKPFSATLLHSRIHNLLE 1218
Query: 120 IK 121
+
Sbjct: 1219 SR 1220
>gi|227114743|ref|ZP_03828399.1| DNA-binding transcriptional activator KdpE [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 226
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++RRF+ +AL G V + L++ D+ +P+ +
Sbjct: 1 MQATILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGLLEAATRKPDLIILDLGLPDGN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + L V+ ++ D+ L+KPF + +L+ + L
Sbjct: 61 GIDYIRDLRQ-WSSLPVIVLSARTDEQDKIDALDAGADDYLTKPFGIGELLARLRVALRR 119
Query: 121 KN 122
+
Sbjct: 120 HS 121
>gi|269926249|ref|YP_003322872.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
gi|269789909|gb|ACZ42050.1| two component transcriptional regulator, winged helix family
[Thermobaculum terrenum ATCC BAA-798]
Length = 227
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+A+DD DM AL + G+ V++ ++G A + + + +++ D MP+M+G E
Sbjct: 2 KVLVADDDLDMLDVTAYALRREGFNVIAASDGLQALRRWQMDHPDVVVLDANMPKMNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E + V+ +T ++KPF R L + +
Sbjct: 62 VCKRIREQ-SNTPVILLTALNDEDHIVQGFHIGADDYVTKPFSHRQLAMRIRAVAKR 117
>gi|224538757|ref|ZP_03679296.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
14838]
gi|224519649|gb|EEF88754.1| hypothetical protein BACCELL_03652 [Bacteroides cellulosilyticus DSM
14838]
Length = 1434
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++++R F+ L K Y V NG DK E ++++DI+MPEMDGIE
Sbjct: 1170 RILIIEDNEELRHFICNVLSK-DYVVFEAENGKQGLDKALAEMPDIVISDIMMPEMDGIE 1228
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+R + V+ ++ ++++ + ++KPF L +V+ L +
Sbjct: 1229 FLKRVKANSNICHIPVILLSAKSSLSDQIQGLEYGADEYITKPFSSTYLKAKVDSLFKQR 1288
>gi|213865133|ref|ZP_03387252.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
Length = 177
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|295836531|ref|ZP_06823464.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
gi|197699650|gb|EDY46583.1| transcriptional regulatory protein CseB [Streptomyces sp. SPB74]
Length = 245
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G SA + LL+ D+++P DG+
Sbjct: 19 RRVLVVEDDPTIVDAIAARLRAEGFLVQTAQDGPSAVETAEAWQPDLLVLDVMLPGFDGL 78
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R++ V+ LL
Sbjct: 79 EVCRRVQAHRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMREVAARVHVLLRR 135
>gi|218779221|ref|YP_002430539.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
gi|218760605|gb|ACL03071.1| Two-component, sigma54 specific, transcriptional regulator, Fis
family [Desulfatibacillum alkenivorans AK-01]
Length = 466
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ MR FL L + GYEV + G A +++ + LLL DI + ++ G+
Sbjct: 7 HKILIVDDELGMREFLGLMLERDGYEVSTAGGGREALGLLKKHSYDLLLCDIRLGDISGL 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R A L+P V+ I+ F++ + + KPF +L + L K
Sbjct: 67 EVLRMAMGLNPKPVVIMISAFSSTESAVKAMNEGAFDYIPKPFDNDELRGTIANALERK 125
>gi|153874109|ref|ZP_02002450.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
gi|152069427|gb|EDN67550.1| sensory transduction histidine kinase [Beggiatoa sp. PS]
Length = 403
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L + LG G++V+ NG A V ++L D++MP + G E+
Sbjct: 12 ILIVDDILENISVLFRFLGNEGFKVLVAQNGQQALKIVDLTRPDIILLDVMMPGLSGFEV 71
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + D+ ++F+T A + A ++KPF +++ +N L++
Sbjct: 72 CQQLKSQQNTQDIPIIFMTALADTVDKVNGFKLGAADYITKPFQHEEVLVRINAHLSL 129
>gi|39997243|ref|NP_953194.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
gi|39984133|gb|AAR35521.1| DNA-binding response regulator [Geobacter sulfurreducens PCA]
Length = 232
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL EDD + + L AG +VV G A D R E L++ D+++P++
Sbjct: 1 MNNYILLVEDDAGIAEVALAYLENAGLKVVHVTTGRDALDNSRAESPLLVVLDLMLPDLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R E D+ V+ IT A+ A + KPF R+LV V +L
Sbjct: 61 GEAVCRELKE-TADIPVVIITAKASEEERLAGFALGADDYVVKPFSPRELVARVQAVLKR 119
>gi|70726491|ref|YP_253405.1| hypothetical protein SH1490 [Staphylococcus haemolyticus JCSC1435]
gi|123660200|sp|Q4L6C6|ARLR_STAHJ RecName: Full=Response regulator ArlR
gi|68447215|dbj|BAE04799.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 219
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ RFL L Y V G + DK + L++ D+++P ++G+E+
Sbjct: 4 ILIVEDEQNLARFLELELTHDNYSVDIEYEGQAGLDKALSNNYDLIILDLMLPNINGLEI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ IT + + KPF + +L + +L +
Sbjct: 64 CRRVRQEQS-TPIIIITAKSDTYDKVTGLDYGADDYIVKPFEIEELFARIRAVLRRQ 119
>gi|186685534|ref|YP_001868730.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186467986|gb|ACC83787.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 439
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +D L AL +AGY+V+ +G + V+ P L+L D++MP +DG
Sbjct: 8 QTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETVKSYPPDLILLDVMMPGIDGF 67
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E R+ ++ ++F+T ++KPF +++ + L +
Sbjct: 68 ETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLKL 127
Query: 121 K 121
+
Sbjct: 128 R 128
>gi|238763581|ref|ZP_04624542.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
33638]
gi|238698213|gb|EEP90969.1| Transcriptional regulatory protein baeR [Yersinia kristensenii ATCC
33638]
Length = 239
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DG
Sbjct: 11 SGTVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQAPPAIILLDLMLPGSDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R D+ +M +T + KP+ R++V V +L
Sbjct: 71 ISICREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|254517513|ref|ZP_05129569.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226911262|gb|EEH96463.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++R + L G +V +G A + + +E L++ DI+MP MDGI+
Sbjct: 4 VLVVDDEKEIRDAIDIYLRGEGMKVFKAKDGVEALELLDKEKIHLIVLDIMMPRMDGIKT 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E +L ++ ++ + ++KPF+ +LV V L
Sbjct: 64 CLKIREKR-NLPIIMLSAKGEDSDKILGLNVGADDYIAKPFNHLELVARVKSQLRR 118
>gi|297198420|ref|ZP_06915817.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297147085|gb|EDY60144.2| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 246
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD D+ L AL G+++ + +GASA RE ++ D+++P+ DG
Sbjct: 20 RVLVVDDDPDLAEVLSGALRYEGWQIRTAGDGASAVAAARELLPDAVVLDVMLPDTDGFA 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D+ V+F+T V ++KPF L ++V + LL
Sbjct: 80 VLRALHSVKADVCVLFLTARDTVEDRIKGITAGGDDYVTKPFSLEEVVARLRGLLRR 136
>gi|170755164|ref|YP_001779900.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
gi|169120376|gb|ACA44212.1| regulatory protein VanR [Clostridium botulinum B1 str. Okra]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD+D+R L L YE++ NGA A ++ ++ L++ D+++P++DG+
Sbjct: 2 EKILIIEDDEDIRDILKLYLEGQSYEILEAENGAKAMKQLVKQ-PDLVILDLMLPDIDGL 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ IT A + ++KPF+ ++V V L
Sbjct: 61 SICKSIRKKYYY-PIIMITAKNADQDKILGLSYGADDYITKPFNPLEVVARVKAQLRR 117
>gi|150003705|ref|YP_001298449.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149932129|gb|ABR38827.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1328
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+++M FL +L Y +++ +G A +K++E +L+++D +MP MDG+E
Sbjct: 1080 LIVDDNEEMLNFLSSSLTDK-YSILTAEDGIEALNKLKENEVTLIVSDWMMPRMDGVEFC 1138
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + +T + + KPF ++ L + L+ ++N
Sbjct: 1139 KAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1197
>gi|110833573|ref|YP_692432.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
gi|110646684|emb|CAL16160.1| DNA-binding response regulator [Alcanivorax borkumensis SK2]
Length = 240
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ EDD+ + + L G V ++G A ++R + L++ D+++P DG+ +
Sbjct: 11 IMIVEDDERLADLTCEYLQSNGLGVTVVSDGEEAIRRIRADQPDLVVLDLMLPGADGLTV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ +T ++KP R L+ + LL
Sbjct: 71 CREVRSAYKN-PILMLTARTDDMDQVLGLEMGADDYVAKPVKPRVLLARIRALLRR 125
>gi|15596126|ref|NP_249620.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|107100385|ref|ZP_01364303.1| hypothetical protein PaerPA_01001410 [Pseudomonas aeruginosa PACS2]
gi|218893102|ref|YP_002441971.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
gi|254245213|ref|ZP_04938535.1| two-component response regulator [Pseudomonas aeruginosa 2192]
gi|9946833|gb|AAG04318.1|AE004527_5 two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|126198591|gb|EAZ62654.1| two-component response regulator [Pseudomonas aeruginosa 2192]
gi|218773330|emb|CAW29142.1| two-component response regulator [Pseudomonas aeruginosa LESB58]
Length = 239
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGGYDLILMDIMLPGRDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ ++ A + L KPF L +L ++ +L
Sbjct: 70 ILRQLRQEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 125
>gi|299147450|ref|ZP_07040515.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
gi|298514728|gb|EFI38612.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 3_1_23]
Length = 1459
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++++R FL L + Y V+ NG ++ L+++D++MP MDG+++
Sbjct: 1198 ILIVEDNNELRHFLWNILSET-YTVLEAANGKEGLKYAQQYIPDLIISDVMMPVMDGLDM 1256
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ ++ +++ ++KPF L + LL +
Sbjct: 1257 VKAIKADHNTCHIPIILLSAKSSLDDRIAGLEQGIDDYITKPFSSTYLKTRILSLLRQR 1315
>gi|296103876|ref|YP_003614022.1| two-component system, OmpR family, response regulator TctD
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058335|gb|ADF63073.1| two-component system, OmpR family, response regulator TctD
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V ++G +A ++ E +++ + DI MP DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQEGFAVDCVSDGRAADHLLQGENYAVAILDIGMPGFDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L V+F+T + VA L KPF L +L + LL
Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRR 118
>gi|294341311|emb|CAZ89725.1| Transcriptional regulatory protein ompR [Thiomonas sp. 3As]
Length = 240
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +DD ++RR L L K G V + +G + + L++ D+++P DG
Sbjct: 4 SDHILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPGDDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R D+ ++ +T L KPF R+L+ + +L
Sbjct: 64 LTLCRNLRAK-SDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILRR 121
>gi|261820614|ref|YP_003258720.1| BaeR family transcriptional regulator [Pectobacterium wasabiae
WPP163]
gi|261604627|gb|ACX87113.1| two component transcriptional regulator, winged helix family
[Pectobacterium wasabiae WPP163]
Length = 242
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L+ L A Y NG + VR+ SL+L D+++P D
Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVIEWVRQHSPSLILLDLMLPGCD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + ++ ++ +T + + KPF R++V V LL
Sbjct: 69 GLTICRTIRQ-FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRR 127
>gi|284035960|ref|YP_003385890.1| response regulator receiver sensor signal transduction histidine
kinase [Spirosoma linguale DSM 74]
gi|283815253|gb|ADB37091.1| response regulator receiver sensor signal transduction histidine
kinase [Spirosoma linguale DSM 74]
Length = 365
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +ILL ED+ +R + + L G++V + NG + + L+L DI+MPE+D
Sbjct: 1 MTTQILLVEDEAQIRENVAELLTLHGFQVETAVNGREGISQALLQQPDLILCDIMMPEVD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ ++ +F+T A L+KPF + L++ + L
Sbjct: 61 GYQVLDVVRNNRSTANIPFIFLTAKTEPADLRRGMVMGADDYLTKPFTFQSLLSAIESRL 120
Query: 119 TIK 121
+
Sbjct: 121 QRE 123
>gi|254411499|ref|ZP_05025276.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196182000|gb|EDX76987.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 524
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ D R L L GY+V +G A + VR P L+ DI MP+MDG +
Sbjct: 9 LIVDDNIDNLRSLAAILRLEGYKVRKAISGQVALETVRSHPPDLIFLDIKMPQMDGYTVC 68
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++F++ A + A ++KPF ++V V L ++
Sbjct: 69 SILKQDTTTGSIPIIFLSALNETADKLKAFAVGGVDYITKPFQAPEVVARVENQLRLQ 126
>gi|146302774|ref|YP_001197365.1| two component, sigma54 specific, Fis family transcriptional
regulator [Flavobacterium johnsoniae UW101]
gi|146157192|gb|ABQ08046.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Flavobacterium johnsoniae UW101]
Length = 387
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ KIL+ ED+ +RR L+K L + Y+V +GA+ +K++ + L+L DI MP+
Sbjct: 1 MS-KILIIEDEAAIRRVLVKILSEENDSYQVDEAEDGAAGLEKIKNNDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ A ++ P++ ++ I+G + + +SKP L L+N V L
Sbjct: 60 MDGVEVLEEAKKIKPEIPMVMISGHGDMETAIQTMRLGAFDYISKPPDLNRLLNTVRNAL 119
Query: 119 TIK 121
K
Sbjct: 120 DKK 122
>gi|90420574|ref|ZP_01228481.1| transcriptional regulatory protein, heavy metal response
[Aurantimonas manganoxydans SI85-9A1]
gi|90335302|gb|EAS49055.1| transcriptional regulatory protein, heavy metal response
[Aurantimonas manganoxydans SI85-9A1]
Length = 233
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD ++ + AL GY V + +GASA + ++ P +L + DI MP MDG+E
Sbjct: 3 TIALVDDDRNILASVSIALENEGYRVETYTDGASALEGLQSRPPNLAIFDIKMPRMDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + D+ V+F+T + KPF R LV V +L
Sbjct: 63 LLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDYIRKPFSQRLLVERVRAILRR 118
>gi|293189340|ref|ZP_06608063.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
F0309]
gi|292821803|gb|EFF80739.1| DNA-binding response regulator RegX3 [Actinomyces odontolyticus
F0309]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD + L +ALG+ GY+V + GA A VR L++ D+ +P+MDG++
Sbjct: 3 TVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVR--GVDLVVLDLGLPDMDGLD 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+AR + ++ +T ++KPF L +L+ V LL +
Sbjct: 61 VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQ 118
>gi|227890323|ref|ZP_04008128.1| two component response regulator [Lactobacillus johnsonii ATCC
33200]
gi|227849137|gb|EEJ59223.1| two component response regulator [Lactobacillus johnsonii ATCC
33200]
Length = 221
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED++ + R L+ A+ YEV NG A + R+ + +++ DI+MP MDGI
Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + V+ +T A V L+KPF L++L+ +
Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|300774982|ref|ZP_07084845.1| response regulator [Chryseobacterium gleum ATCC 35910]
gi|300506797|gb|EFK37932.1| response regulator [Chryseobacterium gleum ATCC 35910]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL EDD + FLIK L +AGY + ++G A + + F ++L DI++P +D
Sbjct: 1 MN--ILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L + ++ ++ + LSKPFH +L++ + LT
Sbjct: 59 GMQLTQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKPFHFEELISRIKA-LTR 117
Query: 121 KN 122
+N
Sbjct: 118 RN 119
>gi|215483396|ref|YP_002325609.1| response regulator [Acinetobacter baumannii AB307-0294]
gi|213988889|gb|ACJ59188.1| response regulator [Acinetobacter baumannii AB307-0294]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|197123400|ref|YP_002135351.1| transcriptional regulator [Anaeromyxobacter sp. K]
gi|196173249|gb|ACG74222.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter sp. K]
Length = 234
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD + F + L G VV ++G D+ F ++L D+++P DG+E+
Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHASDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+ +T A L+KPF R+L+ + ++
Sbjct: 70 RELRSR-SDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRR 123
>gi|218780205|ref|YP_002431523.1| response regulator receiver protein [Desulfatibacillum alkenivorans
AK-01]
gi|218761589|gb|ACL04055.1| Protein with response regulator receiver domain [Desulfatibacillum
alkenivorans AK-01]
Length = 305
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ R L + L + Y V +G + +++ L+L DI MP MDG
Sbjct: 6 ILITDDEPMQRELLEEYLKLSHYRVTHAKDGNQCLEMMQQHEPDLVLLDIQMPGMDGFAT 65
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ D V+F++ L ++KPFH +L+ V L
Sbjct: 66 LTQIRKIPAIADTPVLFLSSLDRQHLKVKGLELGADDYITKPFHPPELLARVKASLRR 123
>gi|26988605|ref|NP_744030.1| histidine kinase [Pseudomonas putida KT2440]
gi|24983381|gb|AAN67494.1|AE016376_4 sensor histidine kinase/response regulator [Pseudomonas putida
KT2440]
Length = 785
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V GA A + + E F L+L D MP MDG E
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGYE 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ V+
Sbjct: 725 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHW 780
>gi|153949144|ref|YP_001401783.1| ZraR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|152960639|gb|ABS48100.1| transcriptional regulatory protein ZraR [Yersinia
pseudotuberculosis IP 31758]
Length = 454
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 5 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 65 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 124
Query: 122 N 122
+
Sbjct: 125 H 125
>gi|331003431|ref|ZP_08326930.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412477|gb|EGG91866.1| hypothetical protein HMPREF0491_01792 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L G+EV++ +G A + + LL+ DI+MP +DGI
Sbjct: 4 ILVCDDDREIVDAIKIYLSGEGFEVLTAYDGEEAIKLMAKNRVDLLIIDIMMPVLDGIRA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + A L+KPF+ +LV V L
Sbjct: 64 TMKIRE-NSTVPIIMLSAKSEDADKILGLNIGADDYLTKPFNPLELVARVKSQLRR 118
>gi|331269705|ref|YP_004396197.1| winged helix family two component transcriptional regulator
[Clostridium botulinum BKT015925]
gi|329126255|gb|AEB76200.1| two component transcriptional regulator, winged helix family
[Clostridium botulinum BKT015925]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
ED++ +R + L Y+++ +NG A + ++E L+L DI++P DG ++ +
Sbjct: 2 EDEEHIRELIKFNLENNNYKIIFASNGIDAVEIAKKELPDLILLDIMLPGKDGYDVCKEI 61
Query: 69 TELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ IT + ++KPF +R+L+ V +L
Sbjct: 62 RNNNDTYNISIIMITAKSEEIDKILGLELGADDYITKPFSIRELIARVKAVLRR 115
>gi|291535584|emb|CBL08696.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
M50/1]
gi|291540826|emb|CBL13937.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ + L +G+EV + N+G + E F + + D+++P +D
Sbjct: 1 MS-KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKQIREE-KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118
>gi|291438629|ref|ZP_06578019.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291341524|gb|EFE68480.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 268
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 44 RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGLS 103
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T +V ++KPF L ++V + L+
Sbjct: 104 VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRR 160
>gi|256826808|ref|YP_003150767.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
gi|256582951|gb|ACU94085.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Cryptobacterium
curtum DSM 15641]
Length = 226
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 45/116 (38%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + L L Y+V +G + + + + D+++P DG +
Sbjct: 3 ILVVEDDPRLAEALAAILKANDYQVDVVGDGDAGLAYAQSGLYDCAVLDVMLPRRDGFSV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A + L ++ +T + + ++KPF +L+ + L
Sbjct: 63 AAQLRREGNALPILMLTARGEIRDKVEGLDAGADDYMTKPFAPVELLARIRSLTRR 118
>gi|226305111|ref|YP_002765069.1| two-component response regulator RegX3 [Rhodococcus erythropolis
PR4]
gi|229490687|ref|ZP_04384525.1| response regulator, two-component system [Rhodococcus erythropolis
SK121]
gi|226184226|dbj|BAH32330.1| two-component response regulator RegX3 [Rhodococcus erythropolis
PR4]
gi|229322507|gb|EEN88290.1| response regulator, two-component system [Rhodococcus erythropolis
SK121]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E N+G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTIVNDGPSALAEFDRSGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKALRSR-SGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|229815074|ref|ZP_04445411.1| hypothetical protein COLINT_02116 [Collinsella intestinalis DSM
13280]
gi|229809304|gb|EEP45069.1| hypothetical protein COLINT_02116 [Collinsella intestinalis DSM
13280]
Length = 258
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 4/126 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE----PFSLLLTDIVM 56
M IL+ EDD D+ + L + G+ +G A ++ P+ L++ D+++
Sbjct: 14 MTANILVVEDDADINEIISTQLSRNGHTCTQAFSGTEALMRLDPNGGPLPYDLVICDLML 73
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P G ++ +D L V+ I+ + A + L+KPF L +L V
Sbjct: 74 PGATGEQIIDSVRGIDSALPVIVISARTSTADRVELLKLGADDYLTKPFDLDELAARVEV 133
Query: 117 LLTIKN 122
L ++
Sbjct: 134 QLRHRS 139
>gi|220907491|ref|YP_002482802.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7425]
gi|219864102|gb|ACL44441.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7425]
Length = 379
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD R L + L + GY V +G ++ + L++ D +MP +DG+E
Sbjct: 3 RILVIDDDPTTRLLLSRKLNQQGYGVEVARDGVEGLEQAAKFLPHLVICDWMMPMIDGLE 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ RR + +T +A + LSKP + +L V L
Sbjct: 63 VCRRLKADPRFATTFFVLLTAKDDIADRIQGLDAGADEFLSKPLEMDELRARVQAGLR 120
>gi|162295958|gb|ABX83927.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|162295949|gb|ABX83921.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|153003972|ref|YP_001378297.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152027545|gb|ABS25313.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 475
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ ++RR L L GY V + A + EP L + DI +P MDG
Sbjct: 5 KPTVLVVDDERNIRRTLRMVLEAEGYAVSEAESAEDALKILEGEPVDLGIFDIRLPGMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L RA EL DL V+ I+G A + D+ SKP ++ V L +
Sbjct: 65 LALLSRARELWRDLPVVVISGHADTSDVVDAVKRGATDFFSKPVDRDRVLVSVRNALARR 124
Query: 122 N 122
+
Sbjct: 125 S 125
>gi|121636407|ref|YP_976630.1| two component sensory transduction protein RegX3 [Mycobacterium
bovis BCG str. Pasteur 1173P2]
gi|2190436|emb|CAA73956.1| RegX3 [Mycobacterium bovis BCG]
gi|121492054|emb|CAL70517.1| Two component sensory transduction protein regX3 (probably
luxR-family) [Mycobacterium bovis BCG str. Pasteur
1173P2]
Length = 227
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLTFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|56552073|ref|YP_162912.1| winged helix family two component transcriptional regulator
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241762025|ref|ZP_04760109.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|4511977|gb|AAD21537.1| aerobic respiration control protein [Zymomonas mobilis subsp.
mobilis ZM4]
gi|56543647|gb|AAV89801.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ZM4]
gi|241373491|gb|EER63078.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis ATCC 10988]
Length = 241
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+Q I++ EDD +R + + L + GY +G +++++ L+L D+++P +G
Sbjct: 3 SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L R + V+F++ + KPF ++LV V +L
Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|331085450|ref|ZP_08334535.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407688|gb|EGG87186.1| hypothetical protein HMPREF0987_00838 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 233
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L GY + NG +A + ++L D+ +P+M
Sbjct: 1 MNKLLILVVEDDTSVRNLITTTLKAHGYRHQTAANGQTAILEASSYNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ R+ ++ ++ I+ + + L+KPF + +L+ +
Sbjct: 61 DGVEIIRKIRS-WSNMPIIVISARSEDNDKIVALDAGADDYLTKPFSVEELLARLR 115
>gi|313204627|ref|YP_004043284.1| two component, sigma54 specific, transcriptional regulator, fis
family [Paludibacter propionicigenes WB4]
gi|312443943|gb|ADQ80299.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Paludibacter propionicigenes WB4]
Length = 383
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L L ++V NG + + F L+ +DI MPEMDGIE
Sbjct: 3 KILVIDDERSIRNTLKDILEFEKHQVTLAENGKQGLEAAQNAVFDLIFSDIKMPEMDGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L E+ + ++ I+G + + + KP L L+ V L
Sbjct: 63 LLGHLHEISIEAPIVMISGHGNIETAVECIKKGAFDFIVKPIDLNRLLITVRNALER 119
>gi|310828176|ref|YP_003960533.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
gi|308739910|gb|ADO37570.1| hypothetical protein ELI_2588 [Eubacterium limosum KIST612]
Length = 231
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+A+D+ + L K G+E V +G A R E +++L D++MP++DG
Sbjct: 2 EKMLIADDNRQITAVLTAYARKEGFEPVVAYDGEEALAAYRREAPAVILLDVMMPKLDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ E + ++ IT + KPF +++ V +L
Sbjct: 62 EVCRQIREE-SAVPIIMITARGEDFEKIMGLDIGADDYIVKPFSGGEVMARVRAILRR 118
>gi|262409249|ref|ZP_06085793.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|294645954|ref|ZP_06723622.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294806056|ref|ZP_06764914.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
gi|262352996|gb|EEZ02092.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_1_22]
gi|292638699|gb|EFF57049.1| response regulator receiver domain protein [Bacteroides ovatus SD CC
2a]
gi|294446739|gb|EFG15348.1| response regulator receiver domain protein [Bacteroides xylanisolvens
SD CC 1b]
Length = 1341
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L + Y + +C NG A +RE L+++DI+MPEM G
Sbjct: 1077 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1135
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T + ++KPF + L + LL
Sbjct: 1136 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1195
Query: 121 K 121
+
Sbjct: 1196 R 1196
>gi|256842620|ref|ZP_05548121.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256735757|gb|EEU49090.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 1321
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L L + Y V +C+NG A RE L+L+D++MPEM G
Sbjct: 1069 QRILIVEDNDDLRTYLEGLLKEE-YLVQTCSNGRDALLVAREYNPDLILSDVMMPEMGGD 1127
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + VM +T + ++KPF + L + +L
Sbjct: 1128 ELCASVKSDIETSHIPVMLLTALGDEKDMLEGLENGADAYITKPFSINVLRANIRNILAN 1187
Query: 121 K 121
+
Sbjct: 1188 R 1188
>gi|239904801|ref|YP_002951539.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239794664|dbj|BAH73653.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1027
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+AEDD + L K+GY V + NG A ++ EE F L+L D+ MP MDG
Sbjct: 899 SSRILVAEDDTISLITAKRMLEKSGYSVSAAKNGQEALQRLTEESFDLILMDVQMPIMDG 958
Query: 62 IELARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+E + + ++ +T +A A +SKP L + R
Sbjct: 959 VEATKAIRGASNLGAKSSVPIVAMTAYAMTGDKETFLAAGMDDYISKPVDKAALAEVIER 1018
Query: 117 LLTIK 121
+L++K
Sbjct: 1019 VLSLK 1023
>gi|254247310|ref|ZP_04940631.1| Response regulator receiver [Burkholderia cenocepacia PC184]
gi|124872086|gb|EAY63802.1| Response regulator receiver [Burkholderia cenocepacia PC184]
Length = 300
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+AEDD + L ++L ++GY V +G A + + F LL+ D+ +P+M G
Sbjct: 57 NMRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSG 116
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ +R + +L V+ +T +V ++KPF L +L V L
Sbjct: 117 LDVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 175
>gi|126698685|ref|YP_001087582.1| two-component response regulator [Clostridium difficile 630]
gi|115250122|emb|CAJ67943.1| Two-component response regulator, Tn1549-like,CTn4-Orf26
[Clostridium difficile]
Length = 230
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ +DD ++ + +++ E CN G K++E + L++ DI+MP MD
Sbjct: 1 MN-KVLIIDDDKELCALIKRSVLSEDIEADFCNTGKEGLQKLKEREYQLVILDIMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + L ++ T A L+KPF + +L+ + L+
Sbjct: 60 GFETLEEIRKENS-LPILMFTSKNDSASKVRGLRAGADDYLTKPFDMDELIARIISLIRR 118
>gi|113477729|ref|YP_723790.1| two component LuxR family transcriptional regulator [Trichodesmium
erythraeum IMS101]
gi|110168777|gb|ABG53317.1| two component transcriptional regulator, LuxR family [Trichodesmium
erythraeum IMS101]
Length = 215
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L +DD ++ + L GY+V++ NG A + + E+ L++ D++MP+M+G
Sbjct: 9 TKHLMLVDDDPNLILLVKDYLEFRGYQVITAENGREALELLEEQIPDLIICDVMMPQMNG 68
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + E + V+F++ + + KPF +LV +V L
Sbjct: 69 YNLVQHIRENLATEWVPVLFLSAKGQIQDRVKGLNTGADVYIVKPFEPEELVAQVESSLK 128
>gi|313499963|gb|ADR61329.1| Histidine kinase [Pseudomonas putida BIRD-1]
Length = 785
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V GA A + + E F L+L D MP MDG E
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGYE 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ V+
Sbjct: 725 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHW 780
>gi|302338615|ref|YP_003803821.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301635800|gb|ADK81227.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 227
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD++ R+ + GY+V +G A DK+++ L++ D++MP MDG E
Sbjct: 4 ILVVEDDENTRKLMKTIFLLNGYKVFVAKDGIDALDKIQDHHIDLIVLDLMMPRMDGYEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +T A A + KP +++ V LL
Sbjct: 64 TTTLRKANNNVPILMVTAKEAPADKKKGFLVGTDDYMVKPVDEEEMLLRVKALLRR 119
>gi|218963158|gb|ACL13308.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|251799424|ref|YP_003014155.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247547050|gb|ACT04069.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLA+DD ++R + + + GY+V +GA A + ++ P +L + D++MP +DG E
Sbjct: 3 HLLLADDDPNIRALVRFVMTREGYQVYEAQDGAEAVEVMQRAPINLAIIDVMMPRIDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L E D+ ++ +T ++ ++KPF +L+ V L N
Sbjct: 63 LCEYIRERY-DIPIIMLTAKDQLSDKEQGYLRGTDDYVTKPFEPEELLFRVKALFRRYN 120
>gi|241204994|ref|YP_002976090.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858884|gb|ACS56551.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 246
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ IL+ +DD ++R + L K G +G V L++ D++MP
Sbjct: 1 MDHVDHILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + ++ +T L KPF R+L+ + +
Sbjct: 61 DDGLVLCRELRAGRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|83309728|ref|YP_419992.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82944569|dbj|BAE49433.1| Response regulator [Magnetospirillum magneticum AMB-1]
Length = 238
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD M R + L G V + G + + + ++L D+++P+MDG E
Sbjct: 2 RVLVVEDDQLMSRAIESMLKAEGMVVDTTALGEDGLEIGKLYDYDIILLDLMLPDMDGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR D V+ ++G + L+KPF +LV + ++
Sbjct: 62 VLRRLRSARIDTPVLILSGLSEPDKKIKGLGSGADDYLTKPFDKGELVARIQAIVRR 118
>gi|157163846|ref|YP_001461164.1| DNA-binding response regulator CreB [Escherichia coli HS]
gi|191167432|ref|ZP_03029247.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
gi|193070613|ref|ZP_03051551.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
gi|194439266|ref|ZP_03071345.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
gi|209921865|ref|YP_002295949.1| DNA-binding response regulator CreB [Escherichia coli SE11]
gi|218698234|ref|YP_002405901.1| DNA-binding response regulator CreB [Escherichia coli 55989]
gi|260871120|ref|YP_003237522.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O111:H- str. 11128]
gi|293476662|ref|ZP_06665070.1| transcriptional regulatory protein creB [Escherichia coli B088]
gi|300824440|ref|ZP_07104553.1| response regulator receiver domain protein [Escherichia coli MS
119-7]
gi|301024658|ref|ZP_07188307.1| response regulator receiver domain protein [Escherichia coli MS
196-1]
gi|307313667|ref|ZP_07593286.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|309795675|ref|ZP_07690091.1| response regulator receiver domain protein [Escherichia coli MS
145-7]
gi|331650886|ref|ZP_08351914.1| transcriptional regulatory protein CreB [Escherichia coli M718]
gi|331666227|ref|ZP_08367108.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
gi|331680565|ref|ZP_08381224.1| transcriptional regulatory protein CreB [Escherichia coli H591]
gi|157069526|gb|ABV08781.1| transcriptional regulatory protein CreB [Escherichia coli HS]
gi|190902572|gb|EDV62306.1| transcriptional regulatory protein CreB [Escherichia coli B7A]
gi|192956096|gb|EDV86561.1| transcriptional regulatory protein CreB [Escherichia coli E110019]
gi|194421748|gb|EDX37756.1| transcriptional regulatory protein CreB [Escherichia coli 101-1]
gi|209915124|dbj|BAG80198.1| two-component regulator protein [Escherichia coli SE11]
gi|218354966|emb|CAV02211.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli 55989]
gi|257767476|dbj|BAI38971.1| DNA-binding response regulator CreB in two-component regulatory
system with CreC [Escherichia coli O111:H- str. 11128]
gi|291321115|gb|EFE60557.1| transcriptional regulatory protein creB [Escherichia coli B088]
gi|299880329|gb|EFI88540.1| response regulator receiver domain protein [Escherichia coli MS
196-1]
gi|300523082|gb|EFK44151.1| response regulator receiver domain protein [Escherichia coli MS
119-7]
gi|306906490|gb|EFN37003.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|308120799|gb|EFO58061.1| response regulator receiver domain protein [Escherichia coli MS
145-7]
gi|315063700|gb|ADT78027.1| DNA-binding response regulator in two-component regulatory system
with CreC [Escherichia coli W]
gi|323176305|gb|EFZ61897.1| transcriptional regulatory protein creB [Escherichia coli 1180]
gi|323380218|gb|ADX52486.1| two component transcriptional regulator, winged helix family
[Escherichia coli KO11]
gi|323945811|gb|EGB41857.1| response regulator receiver domain-containing protein [Escherichia
coli H120]
gi|323970848|gb|EGB66100.1| response regulator receiver domain-containing protein [Escherichia
coli TA007]
gi|324118351|gb|EGC12245.1| response regulator receiver domain-containing protein [Escherichia
coli E1167]
gi|331051340|gb|EGI23389.1| transcriptional regulatory protein CreB [Escherichia coli M718]
gi|331066438|gb|EGI38315.1| transcriptional regulatory protein CreB [Escherichia coli TA271]
gi|331072028|gb|EGI43364.1| transcriptional regulatory protein CreB [Escherichia coli H591]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R+ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|330810260|ref|YP_004354722.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378368|gb|AEA69718.1| putative Response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 233
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + GY+V + G ++ R +P L++ D+++P +DG+++
Sbjct: 4 ILLVEDDTALSELIASYLERNGYQVSVLSRGDHVRERARVDPPDLVILDLMLPGLDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R L ++ +T ++KP R L+ V LL +
Sbjct: 64 CRLLRADSATLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121
>gi|297172289|gb|ADI23266.1| response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [uncultured
actinobacterium HF0770_13M05]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
EDD D+ L +L G+ V + +A + E L++ D ++P MDG+ L +
Sbjct: 2 VEDDADISSLLRFSLENTGFSVFESPSAEAAMQILTERRTDLVIIDWMLPGMDGLNLTKT 61
Query: 68 ATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ +T + A ++KPF R+L+ VN LL
Sbjct: 62 LRNRADTQKIPIIMLTARSDEADAIQGFDSGVDDYITKPFSPRELIARVNALLRR 116
>gi|187919636|ref|YP_001888667.1| two component heavy metal response winged helix family
transcriptional regulator [Burkholderia phytofirmans
PsJN]
gi|187718074|gb|ACD19297.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia phytofirmans PsJN]
Length = 223
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD +L K L ++GY V G E + L++ D+++P +DG E
Sbjct: 2 TILVIEDDPKTGDYLKKGLRESGYAVDLARTGTDGLHMALENAYDLVVLDVMLPGIDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R DL V+F+T V+ L KPF +LV + LL
Sbjct: 62 IMRALR-TRRDLPVIFLTARDHVSDRIRGLELGADDYLVKPFSFTELVLRIRTLLRR 117
>gi|171056736|ref|YP_001789085.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
gi|170774181|gb|ACB32320.1| adenylate/guanylate cyclase [Leptothrix cholodnii SP-6]
Length = 382
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D + R L L G+ V + +G A +++ + L+L D++MP + G +
Sbjct: 16 HILVVDDVEQNVRLLADLLVFQGWRVSTAMSGEQALERIATDAPDLVLLDVMMPGLSGYD 75
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR L ++ +T A +SKP + +L+ V LL IK
Sbjct: 76 VCRRLRAEPDHALLPIVLVTALDPTAERVKGLEAGADDFISKPINRPELMARVRSLLRIK 135
>gi|167764205|ref|ZP_02436332.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
gi|167698321|gb|EDS14900.1| hypothetical protein BACSTE_02589 [Bacteroides stercoris ATCC 43183]
Length = 1317
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ L L + Y V +G A ++ ++++DI+MP MDG+ L
Sbjct: 1071 VLVVEDEKNICELLCDILFE--YTVRVTRDGIEALSEIEHNHPDIIISDIMMPNMDGLTL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ ++ A+V ++ ++KPFH + +++ + LL+ +
Sbjct: 1129 INKLKSELKTSYIPIIGVSAKASVEDQINAFKHGADAYITKPFHPKQIISTIENLLSRQ 1187
>gi|154507667|ref|ZP_02043309.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
17982]
gi|153797301|gb|EDN79721.1| hypothetical protein ACTODO_00148 [Actinomyces odontolyticus ATCC
17982]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD + L +ALG+ GY+V + GA A VR L++ D+ +P+MDG++
Sbjct: 3 TVLLVEDDPAISEPLARALGREGYDVRAHATGAEALADVR--GVDLVVLDLGLPDMDGLD 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+AR + ++ +T ++KPF L +L+ V LL +
Sbjct: 61 VAREIRSSGNRVPILILTARTDEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRRQ 118
>gi|91787833|ref|YP_548785.1| two component transcriptional regulator [Polaromonas sp. JS666]
gi|91697058|gb|ABE43887.1| two component transcriptional regulator, winged helix family
[Polaromonas sp. JS666]
Length = 223
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R L + L GY V +G RE P L++ D+ +P+++G+
Sbjct: 2 RLLLIEDDAALRLTLARQLEADGYRVDQAKDGEEGLFLAREYPVDLVIVDLGLPKLNGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + + ++ +T + L KPF +L + LL
Sbjct: 62 IVQRLRQEGRAIPILILTARGSWQDKVVGLEAGADDYLVKPFEYPELAARLKALLRR 118
>gi|86609986|ref|YP_478748.1| LuxR family DNA-binding response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558528|gb|ABD03485.1| DNA-binding response regulator, LuxR family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 212
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 9/129 (6%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL +DD ++ L GYEVV+ +NG + +R L++ D++MPEMDG
Sbjct: 5 KRLLLIDDDPNLILLAKDYLEFRGYEVVAASNGLEGLEAMRHFTPDLIICDVMMPEMDGY 64
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV------ 114
+ V+F++ A + KPF +LV +V
Sbjct: 65 TFVETIRSNSATDWIPVIFLSARGQTADRVRGLTTGADVYMVKPFEPEELVAQVESSLKH 124
Query: 115 -NRLLTIKN 122
RLL ++N
Sbjct: 125 TERLLQVQN 133
>gi|157158943|ref|YP_001465919.1| DNA-binding response regulator CreB [Escherichia coli E24377A]
gi|157080973|gb|ABV20681.1| transcriptional regulatory protein CreB [Escherichia coli E24377A]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ + L ED+ + L+ L + G+ V G DK R+ +++ D+ +P++ G
Sbjct: 4 ETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKARQLVPDVMILDVGLPDISGF 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R+ L P L V+F+T + ++KPF R++ V LL
Sbjct: 64 ELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYVAKPFSPREVCARVRTLLRR 121
>gi|329956519|ref|ZP_08297116.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
gi|328524416|gb|EGF51486.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides clarus YIT 12056]
Length = 1449
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED++++R FL +L + Y V++ +NG + + L+++D++MP MDG+E+
Sbjct: 1190 ILVVEDNNELRHFLKSSLSGS-YNVITASNGKEGLQRAIDNVPDLIISDVMMPIMDGLEM 1248
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++ ++ A++ ++KPF L + LL +
Sbjct: 1249 IGQIKANNNICHIPIIVLSAKASLDDRIAGLEHGIDDYITKPFSSTYLKIRITSLLRQR 1307
>gi|322419347|ref|YP_004198570.1| Fis family two component sigma54 specific transcriptional regulator
[Geobacter sp. M18]
gi|320125734|gb|ADW13294.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter sp. M18]
Length = 460
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ MR L L AGY V + G D + ++ F +++TD+ +P DG+
Sbjct: 2 KKILIIEDELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E+ + + PD V+ ITG+A V ++ ++KPF L++ V R L
Sbjct: 62 EVLKAVRKAQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFL 117
>gi|237713842|ref|ZP_04544323.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
gi|229445998|gb|EEO51789.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D1]
Length = 1330
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+IL+ ED+DD+R +L+ L + Y + +C NG A +RE L+++DI+MPEM G
Sbjct: 1066 QRILIVEDNDDLRNYLVDMLKTS-YNIQACPNGKDALIIIREFNPDLVISDIMMPEMSGD 1124
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T + ++KPF + L + LL
Sbjct: 1125 ELCSAIKGDLEMSHIPVVLLTALGDEKNMLEGLEIGADAYITKPFSVGILKATIKNLLAN 1184
Query: 121 K 121
+
Sbjct: 1185 R 1185
>gi|256819847|ref|YP_003141126.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
gi|256581430|gb|ACU92565.1| histidine kinase [Capnocytophaga ochracea DSM 7271]
Length = 1347
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+DDMR ++ L + V+ +G + L+++DI+MP+ DGI
Sbjct: 1094 ETILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAIAHIPDLIVSDIMMPKRDGI 1152
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLT 119
+ + E + ++ +T + + + ++KPF + L + LL+
Sbjct: 1153 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1212
Query: 120 IK 121
K
Sbjct: 1213 RK 1214
>gi|255282781|ref|ZP_05347336.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
14469]
gi|255266802|gb|EET60007.1| DNA-binding response regulator VanRB [Bryantella formatexigens DSM
14469]
Length = 217
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + + L KAGY+ +G A DK+ ++ + L+L DI++P+++G E
Sbjct: 3 KILIVEDEEAIANLIRMNLVKAGYQCELAFDGEEAADKIAQKSYDLILLDIMLPKLNGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ A + D+ V+F+T ++KPF + +L+ V +L
Sbjct: 63 VLEYAKSV--DIPVIFLTAMGETQQKVKGLRLGAEDYIAKPFEIAELLARVETVLRR 117
>gi|194292019|ref|YP_002007926.1| response regulator in two-component regulatory system ompr family
[Cupriavidus taiwanensis LMG 19424]
gi|193225923|emb|CAQ71870.1| Response regulator in two-component regulatory system ompR family
[Cupriavidus taiwanensis LMG 19424]
Length = 246
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L ++G V NG + + L++ D+++P DG+
Sbjct: 6 HILIVDDDREIRELVAAYLERSGMRVSLAANGREMRAALDKGSVDLVVLDLMLPGEDGLA 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R +L V+ +T A L KPF R+L+ + +L
Sbjct: 66 LCRDLRAGERRNLPVLMLTARNEEADRILGLEMGADDYLVKPFAARELLARIRSVLRR 123
>gi|184158146|ref|YP_001846485.1| response regulator [Acinetobacter baumannii ACICU]
gi|332872696|ref|ZP_08440663.1| response regulator receiver domain protein [Acinetobacter baumannii
6014059]
gi|183209740|gb|ACC57138.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Acinetobacter baumannii
ACICU]
gi|310756669|gb|ADP20467.1| AdeR [Acinetobacter baumannii]
gi|310756672|gb|ADP20469.1| AdeR [Acinetobacter baumannii]
gi|310756675|gb|ADP20471.1| AdeR [Acinetobacter baumannii]
gi|310756678|gb|ADP20473.1| AdeR [Acinetobacter baumannii]
gi|310756681|gb|ADP20475.1| AdeR [Acinetobacter baumannii]
gi|310756684|gb|ADP20477.1| AdeR [Acinetobacter baumannii]
gi|310756687|gb|ADP20479.1| AdeR [Acinetobacter baumannii]
gi|310756690|gb|ADP20481.1| AdeR [Acinetobacter baumannii]
gi|310756693|gb|ADP20483.1| AdeR [Acinetobacter baumannii]
gi|310756696|gb|ADP20485.1| AdeR [Acinetobacter baumannii]
gi|310756699|gb|ADP20487.1| AdeR [Acinetobacter baumannii]
gi|310756702|gb|ADP20489.1| AdeR [Acinetobacter baumannii]
gi|310756705|gb|ADP20491.1| AdeR [Acinetobacter baumannii]
gi|310756708|gb|ADP20493.1| AdeR [Acinetobacter baumannii]
gi|310756714|gb|ADP20497.1| AdeR [Acinetobacter baumannii]
gi|322508464|gb|ADX03918.1| AdeR [Acinetobacter baumannii 1656-2]
gi|323518087|gb|ADX92468.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
gi|332739090|gb|EGJ69950.1| response regulator receiver domain protein [Acinetobacter baumannii
6014059]
Length = 247
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|145641399|ref|ZP_01796978.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae R3021]
gi|145273942|gb|EDK13809.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae 22.4-21]
Length = 164
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ +R + L + Y+V+ ++ +A +K++E L+L D ++P
Sbjct: 1 MTRKILIVEDECAIREMIALFLSQKYYDVIEASDFKTAINKIKEN-PKLILLDWMLPGRS 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + + ++ +T + ++KPF + L+ + +
Sbjct: 60 GIQFIQYIKKQESYAAIPIIMLTAKSTEEDCIACLNAGADDYITKPFSPQILLARIEAVW 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|146310223|ref|YP_001175297.1| DNA-binding response regulator CreB [Enterobacter sp. 638]
gi|145317099|gb|ABP59246.1| two component transcriptional regulator, winged helix family
[Enterobacter sp. 638]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L ED+ + LI L + G+ V + G A D+ + +L + D+ +P++ G EL
Sbjct: 6 IWLVEDEISIAETLIYMLSQEGFAVKAFERGLPALDEAHRQAPALAILDVGLPDISGFEL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ P L V+F+T + ++KPF R++ V +L
Sbjct: 66 CRQLLAQHPSLPVLFLTARSDEVDKLLGLEMGADDYVAKPFSPREVCARVRTILRR 121
>gi|152983865|ref|YP_001349929.1| two-component response regulator [Pseudomonas aeruginosa PA7]
gi|150959023|gb|ABR81048.1| two-component response regulator [Pseudomonas aeruginosa PA7]
Length = 239
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 10 RLLAIEDDPTLGAHLFRHLNGSGFEVTWCRDGEEGLAAARNGAYDLILMDIMLPGRDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E L V+ ++ A + L KPF L +L ++ +L
Sbjct: 70 ILRQLREEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 125
>gi|322835071|ref|YP_004215098.1| Fis family transcriptional regulator [Rahnella sp. Y9602]
gi|321170272|gb|ADW75971.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Rahnella sp. Y9602]
Length = 470
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + ++G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCTTFDSGNEVLDAIATQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|257440628|ref|ZP_05616383.1| KDP operon transcriptional regulatory protein KdpE
[Faecalibacterium prausnitzii A2-165]
gi|257196951|gb|EEU95235.1| KDP operon transcriptional regulatory protein KdpE
[Faecalibacterium prausnitzii A2-165]
Length = 236
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L GY+ ++ +NG +A ++L D+ +P++
Sbjct: 1 MNKPTILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DGIE+ R +L ++ ++ + + ++ L+KPF + +L+ +
Sbjct: 61 DGIEVIRSVR-TWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLR 115
>gi|283795144|ref|ZP_06344297.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
gi|291076787|gb|EFE14151.1| DNA-binding response regulator VanRB [Clostridium sp. M62/1]
Length = 224
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ ED++ ++ + L AGY VV +G ++ R L+L D+++P++D
Sbjct: 1 MSKMILIIEDEESIQNIIKAFLEDAGYTVVLAADGLEGIEQFRANKPDLVLLDLMLPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ +T ++KPF + ++ + +L
Sbjct: 61 GFAVCEILRKE-SRVPIIMLTALDDEDSQMKGFDALADDYITKPFSMPVVMKHIEAVLRR 119
>gi|261406956|ref|YP_003243197.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261283419|gb|ACX65390.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 235
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ +R + L + Y V + NG A + L++ D+++P+ G
Sbjct: 2 KKILVIDDEVAIRDLIELVLRRENYVVQTAENGKIALQLLDAFGPDLVVLDLMLPDCSGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + T + V+ ++ V ++KPF R+L+ + +L
Sbjct: 62 DLCKEITGKRA-VPVIMLSAKNEVIDKVLGLELGAEDYMTKPFDNRELLARIKVILRR 118
>gi|237666049|ref|ZP_04526037.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|237658996|gb|EEP56548.1| DNA-binding response regulator [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 234
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 37/120 (30%), Positives = 65/120 (54%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+AEDD+D+ + L L +G+EVV +NG A K++EE L L D++MP M+
Sbjct: 1 MKYKILVAEDDNDIVKILKLYLDNSGFEVVYVDNGMDALKKIQEEHIDLALLDLIMPIMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + E+ ++ ++ + ++ + + L+KPF +++ +N L
Sbjct: 61 GYELTKNIREI-SNIPILIFSAKYEISDKILALSIGADDYLTKPFEPMEVIARINSNLRR 119
>gi|330885633|gb|EGH19782.1| sensor histidine kinase BaeS [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 690
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 473 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 532
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ IT + KPF R++V V +L
Sbjct: 533 CRELRS-FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 587
>gi|324328962|gb|ADY24222.1| response regulator [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 229
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL +D+ D+ F+ +L GYEV S +G A K+ + L++ D+++P+M+
Sbjct: 1 MTSKILLVDDEPDILTFIEDSLVMEGYEVRSALSGEEALKKL-DNSVDLIILDVMLPDMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + E ++F++ ++ + +SKPF L++L + L
Sbjct: 60 GFKVCEKMRESYA-CPILFLSADSSERSRIEGLLIGGDDYISKPFSLKELKARIVANLRR 118
>gi|310823306|ref|YP_003955664.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309396378|gb|ADO73837.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 397
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+A+DD R+ L + Y + +G V EE L+L D++MP +DG
Sbjct: 19 TRQVLIADDDAASRKIAAALLAASDYRIRFATSGEETLAAVGEERPDLVLLDVMMPGLDG 78
Query: 62 IELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR E + ++ +T + L KP H +L V+ LL
Sbjct: 79 FEVCRRLRERLSGEYIPIILVTSLDGRSDVVQGLKAGADDFLHKPVHGAELRARVSNLLK 138
Query: 120 IK 121
++
Sbjct: 139 VR 140
>gi|239979783|ref|ZP_04702307.1| two-component system response regulator [Streptomyces albus J1074]
Length = 221
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L EDDD +R L +L + G+ V + G +RE+ L++ D+++P +DG E+
Sbjct: 1 MLIEDDDAIRTALELSLTRQGHRVATAATGEEGLTLLREQRPDLIVLDVMLPGIDGFEVC 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D L ++ +T + + KP R L + +L
Sbjct: 61 RRIRRTD-QLPIILLTARSDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRR 114
>gi|254520861|ref|ZP_05132917.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226914610|gb|EEH99811.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 232
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +DD ++ + L GY V+ +G A REE L++ D++MP +
Sbjct: 1 MSKLNILVVDDDKEITEAIEIYLINEGYNVLVAYDGVQALKIAREEDIHLIIMDLMMPNL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ ++ ++ + + L+KPF+ +L+ VN +
Sbjct: 61 DGTRATIELRRE-KEIPIIMLSAKSEDSDKILGLNLGADDYLTKPFNPLELIARVNSQIR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|210618151|ref|ZP_03291916.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
gi|210148975|gb|EEA79984.1| hypothetical protein CLONEX_04149 [Clostridium nexile DSM 1787]
Length = 223
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++ L + L +AGY V N+G + ++ FSL+L DI+MP++D
Sbjct: 1 MIDNILIIEDEKAIQSVLYELLTEAGYRVTLANDGLEGLSQFEKQYFSLILLDIMMPKID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + D+ ++ +T + + ++KPF L+ ++ + +L
Sbjct: 61 GYAVCEIIRK-NSDIPIIMLTAMDEEEAQVKAFELQADDYITKPFSLKLVLMRIEAVLRR 119
>gi|17988319|ref|NP_540953.1| transcriptional regulatory protein chvI [Brucella melitensis bv. 1
str. 16M]
gi|23502938|ref|NP_699065.1| DNA-binding response regulator BvrR [Brucella suis 1330]
gi|62290933|ref|YP_222726.1| DNA-binding response regulator BvrR [Brucella abortus bv. 1 str.
9-941]
gi|82700844|ref|YP_415418.1| response regulator receiver [Brucella melitensis biovar Abortus
2308]
gi|148560408|ref|YP_001259894.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
25840]
gi|161620004|ref|YP_001593891.1| transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
gi|163844109|ref|YP_001628513.1| transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
gi|189025147|ref|YP_001935915.1| transcriptional regulator [Brucella abortus S19]
gi|225626471|ref|ZP_03784510.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
gi|225853520|ref|YP_002733753.1| transcriptional regulator ChvI [Brucella melitensis ATCC 23457]
gi|237816441|ref|ZP_04595434.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
A]
gi|254690226|ref|ZP_05153480.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 6
str. 870]
gi|254694714|ref|ZP_05156542.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 3
str. Tulya]
gi|254696341|ref|ZP_05158169.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 2
str. 86/8/59]
gi|254700722|ref|ZP_05162550.1| Transcriptional regulatory protein chvI [Brucella suis bv. 5 str.
513]
gi|254705094|ref|ZP_05166922.1| Transcriptional regulatory protein chvI [Brucella suis bv. 3 str.
686]
gi|254707389|ref|ZP_05169217.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
M163/99/10]
gi|254709068|ref|ZP_05170879.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
B2/94]
gi|254718148|ref|ZP_05179959.1| Transcriptional regulatory protein chvI [Brucella sp. 83/13]
gi|254731257|ref|ZP_05189835.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 4
str. 292]
gi|256030593|ref|ZP_05444207.1| Transcriptional regulatory protein chvI [Brucella pinnipedialis
M292/94/1]
gi|256045695|ref|ZP_05448573.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 1
str. Rev.1]
gi|256158589|ref|ZP_05456479.1| Transcriptional regulatory protein chvI [Brucella ceti M490/95/1]
gi|256254000|ref|ZP_05459536.1| Transcriptional regulatory protein chvI [Brucella ceti B1/94]
gi|256258479|ref|ZP_05464015.1| Transcriptional regulatory protein chvI [Brucella abortus bv. 9
str. C68]
gi|256262996|ref|ZP_05465528.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|260169499|ref|ZP_05756310.1| Transcriptional regulatory protein chvI [Brucella sp. F5/99]
gi|260546196|ref|ZP_05821936.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260562995|ref|ZP_05833481.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260567438|ref|ZP_05837908.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260755765|ref|ZP_05868113.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260758988|ref|ZP_05871336.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260760712|ref|ZP_05873055.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260884789|ref|ZP_05896403.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
gi|261215041|ref|ZP_05929322.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|261221140|ref|ZP_05935421.1| regulatory protein BvrR [Brucella ceti B1/94]
gi|261314875|ref|ZP_05954072.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
gi|261316567|ref|ZP_05955764.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
gi|261751232|ref|ZP_05994941.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
gi|261755797|ref|ZP_05999506.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
gi|261759025|ref|ZP_06002734.1| transcriptional regulatory protein [Brucella sp. F5/99]
gi|265983104|ref|ZP_06095839.1| regulatory protein BvrR [Brucella sp. 83/13]
gi|265987640|ref|ZP_06100197.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
gi|265992115|ref|ZP_06104672.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
gi|265997100|ref|ZP_06109657.1| regulatory protein BvrR [Brucella ceti M490/95/1]
gi|294851319|ref|ZP_06791992.1| two-component system protein [Brucella sp. NVSL 07-0026]
gi|297247318|ref|ZP_06931036.1| two-component system, OmpR family, response regulator [Brucella
abortus bv. 5 str. B3196]
gi|306837662|ref|ZP_07470531.1| two component transcriptional regulator [Brucella sp. NF 2653]
gi|306842796|ref|ZP_07475437.1| two component transcriptional regulator [Brucella sp. BO2]
gi|306843509|ref|ZP_07476110.1| two component transcriptional regulator [Brucella sp. BO1]
gi|17984093|gb|AAL53217.1| transcriptional regulatory protein chvi [Brucella melitensis bv. 1
str. 16M]
gi|23348972|gb|AAN30980.1| DNA-binding response regulator BvrR, putative [Brucella suis 1330]
gi|62197065|gb|AAX75365.1| BvrR, DNA-binding response regulator [Brucella abortus bv. 1 str.
9-941]
gi|82616945|emb|CAJ12048.1| Response regulator receiver:Transcriptional regulatory protein, C
terminal [Brucella melitensis biovar Abortus 2308]
gi|148371665|gb|ABQ61644.1| putative DNA-binding response regulator BvrR [Brucella ovis ATCC
25840]
gi|161336815|gb|ABX63120.1| Transcriptional regulatory protein chvI [Brucella canis ATCC 23365]
gi|163674832|gb|ABY38943.1| Transcriptional regulatory protein chvI [Brucella suis ATCC 23445]
gi|189020719|gb|ACD73441.1| Transcriptional regulatory protein [Brucella abortus S19]
gi|225618128|gb|EEH15171.1| Transcriptional regulatory protein chvI [Brucella ceti str. Cudo]
gi|225641885|gb|ACO01799.1| Transcriptional regulatory protein chvI [Brucella melitensis ATCC
23457]
gi|237788508|gb|EEP62723.1| Transcriptional regulatory protein chvI [Brucella abortus str. 2308
A]
gi|260096303|gb|EEW80179.1| transcriptional regulatory protein [Brucella abortus NCTC 8038]
gi|260153011|gb|EEW88103.1| transcriptional regulatory protein [Brucella melitensis bv. 1 str.
16M]
gi|260156956|gb|EEW92036.1| transcriptional regulatory protein [Brucella suis bv. 4 str. 40]
gi|260669306|gb|EEX56246.1| two component transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|260671144|gb|EEX57965.1| two component transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260675873|gb|EEX62694.1| two component transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|260874317|gb|EEX81386.1| regulatory protein BvrR [Brucella abortus bv. 9 str. C68]
gi|260916648|gb|EEX83509.1| two component transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|260919724|gb|EEX86377.1| regulatory protein BvrR [Brucella ceti B1/94]
gi|261295790|gb|EEX99286.1| regulatory protein BvrR [Brucella pinnipedialis B2/94]
gi|261303901|gb|EEY07398.1| regulatory protein BvrR [Brucella pinnipedialis M163/99/10]
gi|261739009|gb|EEY27005.1| transcriptional regulatory protein [Brucella sp. F5/99]
gi|261740985|gb|EEY28911.1| regulatory protein BvrR [Brucella suis bv. 5 str. 513]
gi|261745550|gb|EEY33476.1| regulatory protein BvrR [Brucella suis bv. 3 str. 686]
gi|262551568|gb|EEZ07558.1| regulatory protein BvrR [Brucella ceti M490/95/1]
gi|263003181|gb|EEZ15474.1| regulatory protein BvrR [Brucella melitensis bv. 1 str. Rev.1]
gi|263092870|gb|EEZ17045.1| transcriptional regulatory protein [Brucella melitensis bv. 2 str.
63/9]
gi|264659837|gb|EEZ30098.1| regulatory protein BvrR [Brucella pinnipedialis M292/94/1]
gi|264661696|gb|EEZ31957.1| regulatory protein BvrR [Brucella sp. 83/13]
gi|294819908|gb|EFG36907.1| two-component system protein [Brucella sp. NVSL 07-0026]
gi|297174487|gb|EFH33834.1| two-component system, OmpR family, response regulator [Brucella
abortus bv. 5 str. B3196]
gi|306276200|gb|EFM57900.1| two component transcriptional regulator [Brucella sp. BO1]
gi|306287069|gb|EFM58577.1| two component transcriptional regulator [Brucella sp. BO2]
gi|306407220|gb|EFM63430.1| two component transcriptional regulator [Brucella sp. NF 2653]
gi|326410088|gb|ADZ67153.1| Transcriptional regulatory protein [Brucella melitensis M28]
gi|326539805|gb|ADZ88020.1| Transcriptional regulatory protein chvI [Brucella melitensis M5-90]
Length = 239
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|15607632|ref|NP_215005.1| two component sensory transduction protein RegX3 [Mycobacterium
tuberculosis H37Rv]
gi|31791671|ref|NP_854164.1| two component sensory transduction protein RegX3 [Mycobacterium
bovis AF2122/97]
gi|148660258|ref|YP_001281781.1| two component sensory transduction protein RegX3 [Mycobacterium
tuberculosis H37Ra]
gi|148821690|ref|YP_001286444.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis F11]
gi|215402254|ref|ZP_03414435.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis 02_1987]
gi|215410013|ref|ZP_03418821.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis 94_M4241A]
gi|215444596|ref|ZP_03431348.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis T85]
gi|218752126|ref|ZP_03530922.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis GM 1503]
gi|219556316|ref|ZP_03535392.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis T17]
gi|253797420|ref|YP_003030421.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 1435]
gi|254363455|ref|ZP_04979501.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis str. Haarlem]
gi|254549440|ref|ZP_05139887.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis '98-R604 INH-RIF-EM']
gi|260185360|ref|ZP_05762834.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis CPHL_A]
gi|260199491|ref|ZP_05766982.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis T46]
gi|260203644|ref|ZP_05771135.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis K85]
gi|289441874|ref|ZP_06431618.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis T46]
gi|289446035|ref|ZP_06435779.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis CPHL_A]
gi|289552742|ref|ZP_06441952.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 605]
gi|289568414|ref|ZP_06448641.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis T17]
gi|289573078|ref|ZP_06453305.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis K85]
gi|289744198|ref|ZP_06503576.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis 02_1987]
gi|289756566|ref|ZP_06515944.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis T85]
gi|289760610|ref|ZP_06519988.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis GM 1503]
gi|294995998|ref|ZP_06801689.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis 210]
gi|297632977|ref|ZP_06950757.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 4207]
gi|297729952|ref|ZP_06959070.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN R506]
gi|298523970|ref|ZP_07011379.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis 94_M4241A]
gi|306779340|ref|ZP_07417677.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu002]
gi|306802091|ref|ZP_07438759.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu008]
gi|306806302|ref|ZP_07442970.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu007]
gi|306966500|ref|ZP_07479161.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu009]
gi|306970694|ref|ZP_07483355.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu010]
gi|313657281|ref|ZP_07814161.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN V2475]
gi|1731207|sp|Q11156|REGX3_MYCTU RecName: Full=Sensory transduction protein regX3
gi|38605703|sp|O07130|REGX3_MYCBO RecName: Full=Sensory transduction protein regX3
gi|1449289|emb|CAB00952.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
[Mycobacterium tuberculosis H37Rv]
gi|2190480|emb|CAA73958.1| RegX3 [Mycobacterium tuberculosis]
gi|31617257|emb|CAD93364.1| TWO COMPONENT SENSORY TRANSDUCTION PROTEIN REGX3 (TRANSCRIPTIONAL
REGULATORY PROTEIN) (PROBABLY LUXR-FAMILY)
[Mycobacterium bovis AF2122/97]
gi|134148969|gb|EBA41014.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis str. Haarlem]
gi|148504410|gb|ABQ72219.1| two component sensory transduction protein RegX3 [Mycobacterium
tuberculosis H37Ra]
gi|148720217|gb|ABR04842.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis F11]
gi|253318923|gb|ACT23526.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 1435]
gi|289414793|gb|EFD12033.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis T46]
gi|289418993|gb|EFD16194.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis CPHL_A]
gi|289437374|gb|EFD19867.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 605]
gi|289537509|gb|EFD42087.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis K85]
gi|289542168|gb|EFD45816.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis T17]
gi|289684726|gb|EFD52214.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis 02_1987]
gi|289708116|gb|EFD72132.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis GM 1503]
gi|289712130|gb|EFD76142.1| two component system sensor transduction protein regX3
[Mycobacterium tuberculosis T85]
gi|298493764|gb|EFI29058.1| two component sensory transduction protein regX3 [Mycobacterium
tuberculosis 94_M4241A]
gi|308327670|gb|EFP16521.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu002]
gi|308347183|gb|EFP36034.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu007]
gi|308351125|gb|EFP39976.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu008]
gi|308355755|gb|EFP44606.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu009]
gi|308359814|gb|EFP48665.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu010]
gi|326902318|gb|EGE49251.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis W-148]
gi|328457206|gb|AEB02629.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis KZN 4207]
Length = 227
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|114561672|ref|YP_749185.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114332965|gb|ABI70347.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 244
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 50/118 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q ILL ED+ D+ + +I L Y V A + + L+L D ++P+ DGI
Sbjct: 14 QHILLVEDEQDLAKLIILNLKALNYSVDHATTLKQAMHIIEHKKLDLILMDRMLPDGDGI 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ +M +T + A L KPF + +L V LL
Sbjct: 74 MLCEQLRQDGKEVPLMLLTAKDSEADVVLGLEAGADDYLVKPFSVLELRARVKALLRR 131
>gi|329938393|ref|ZP_08287818.1| two-component system regulator [Streptomyces griseoaurantiacus
M045]
gi|329302366|gb|EGG46257.1| two-component system regulator [Streptomyces griseoaurantiacus
M045]
Length = 289
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDDD + L + LG+ G+ V GA ++L D+ +P+MDGIE
Sbjct: 2 RVLLIEDDDRVAGPLTEGLGRFGFTVDRARTGAEGLAA---GACDMVLLDLGLPDMDGIE 58
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R L + ++ IT + +SKPF +R+L+ + +
Sbjct: 59 VCRALR-LRSQVPIIMITARSDEVDRVLGLEIGADDYVSKPFGVRELIARIRAVTRR 114
>gi|300864101|ref|ZP_07109000.1| Response regulator receiver modulated diguanylate cyclase
[Oscillatoria sp. PCC 6506]
gi|300337917|emb|CBN54146.1| Response regulator receiver modulated diguanylate cyclase
[Oscillatoria sp. PCC 6506]
Length = 315
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + + + L K GYE +G A ++V+ L+L D +MP M+G+E+
Sbjct: 11 ILVVDDVTENLQLIALILEKRGYETTFATSGKQALERVQTANPDLILLDFMMPHMNGLEV 70
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++F+T + ++KPF +L+ V L +K
Sbjct: 71 CEQLKANPDVAEIPIIFLTASHEQEHLIQAFEKGAVDYITKPFSTAELLVRVRTHLELK 129
>gi|298248013|ref|ZP_06971818.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297550672|gb|EFH84538.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L K L K Y V +G A P+ L++ D+++P ++G E
Sbjct: 2 RILVVEDDPRLGPSLKKGLEKHHYAVDLALDGEDAVLMGTTTPYDLIVLDVLLPRLNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T + L+KPF R+L + LL ++
Sbjct: 62 VCSQLRNHRRTMPILLLTALGELDHRVTGLDTGADDYLTKPFAFRELEARIRALLRRES 120
>gi|256112415|ref|ZP_05453336.1| Transcriptional regulatory protein chvI [Brucella melitensis bv. 3
str. Ether]
gi|265993852|ref|ZP_06106409.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
gi|262764833|gb|EEZ10754.1| regulatory protein BvrR [Brucella melitensis bv. 3 str. Ether]
Length = 239
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|262196998|ref|YP_003268207.1| response regulator receiver modulated diguanylate cyclase with
PAS/PAC sensor [Haliangium ochraceum DSM 14365]
gi|262080345|gb|ACY16314.1| response regulator receiver modulated diguanylate cyclase with
PAS/PAC sensor [Haliangium ochraceum DSM 14365]
Length = 1131
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++L+ +DDD +R + L AGY V +G +A + + LLL DI+MPEMDG
Sbjct: 798 HRVLVVDDDDAIRAICREVLENAGYAVRDVPDGYAALTETKRYRPDLLLLDIMMPEMDGF 857
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ A R ++F++ A A + ++KPF +LV V++ +
Sbjct: 858 QTAERLKSDPSTSMTPIIFLSAKGATADKVRAFRSGAEDYVTKPFDAAELVARVSKTVER 917
Query: 121 KN 122
+
Sbjct: 918 HS 919
Score = 55.9 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 17 FLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPDLK 76
L L AG++V+ + A REE SL + P+ DG+ L DPD +
Sbjct: 688 ALKGILLMAGFQVLIAEDADEALALTREEQPSLAVIYTDTPDRDGLALV-EIFRHDPDTR 746
Query: 77 ---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
V+ I+G L ++ + L P V RL+
Sbjct: 747 KTAVLVISG--TEDLRDAASRANANEFLHTPLAPGAFVEACTRLI 789
Score = 39.0 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD--G 61
KI+ D+ + + L + Y++ A ++ P + +++PE G
Sbjct: 6 KIVAIVDEPALAEEVRGELSRQ-YDLDIAITTEGARARLEANPD---IDVVLLPEFSDEG 61
Query: 62 IELARR--ATELDPDLKVMFITGFAAVALNPDSNA----PKNAKVLSKPFHLRDLVNEVN 115
+AR EL PD+ ++ ++ + + +V P+ +L V
Sbjct: 62 PAVARAANLGELRPDVPILVVSADPESSDLNTAIHGQQIAGAVQV---PWRSGELSMAVE 118
Query: 116 R 116
R
Sbjct: 119 R 119
>gi|225851211|ref|YP_002731445.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Persephonella marina EX-H1]
gi|225646536|gb|ACO04722.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Persephonella marina EX-H1]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + EDD+D+ L+ L K G+ V S N AY ++ + L++ DI++P+MDG+E
Sbjct: 4 IYVVEDDEDINELLVYNLKKEGFSVRSFLNSKEAYRNIKSDYPDLIVLDIMLPDMDGLEF 63
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ +T + ++KPF +R+L+ + +L
Sbjct: 64 CKLLKSDKDTEEIPIIMLTAKSTEIDKIVGLELGADDYVTKPFSIRELIARIKAVLKR 121
>gi|220912472|ref|YP_002487781.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
gi|219859350|gb|ACL39692.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ + R + L GY V NG A P +L+ D+ +P+++G
Sbjct: 2 KRILVVDDEPQLLRAMQINLRAEGYAVSVAANGTDALHLAASNPPDVLVLDLGLPDIEGA 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R DL ++ ++ A ++ ++KPF L +L+ + + ++
Sbjct: 62 DVIRGIRA-WSDLPIVVLSARQGSADKVEALDAGADDYVTKPFGLDELLARLRAV-ERRS 119
>gi|167762544|ref|ZP_02434671.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC
43183]
gi|167699650|gb|EDS16229.1| hypothetical protein BACSTE_00900 [Bacteroides stercoris ATCC
43183]
Length = 225
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ D+R + +L K + V + + SA DK+ + + +L DI++P G++
Sbjct: 2 KILIVEDEQDLRETIRTSLLKEKFVVETAADYFSALDKINDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ D L+KPFHL +L + L+ +
Sbjct: 62 LLRELKHLRRTDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARIKSLIRRR 119
>gi|66044744|ref|YP_234585.1| heavy metal response regulator [Pseudomonas syringae pv. syringae
B728a]
gi|63255451|gb|AAY36547.1| Heavy metal response regulator [Pseudomonas syringae pv. syringae
B728a]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + V+F+T V L KPF +L+ V LL
Sbjct: 62 VIRRLRTVGQSVPVLFLTARDGVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|88855871|ref|ZP_01130533.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
gi|88814738|gb|EAR24598.1| two-component system, regulatory protein [marine actinobacterium
PHSC20C1]
Length = 242
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 47/117 (40%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD M + L GY V NG A E FS D+++PEM G E
Sbjct: 20 KILVVEDDAAMGALVQHGLEDDGYAVTLVTNGVDALIATAHENFSAAAIDVMLPEMTGFE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L V+ +T AV L+KPF + + L+
Sbjct: 80 ICRHLRKQGNSLPVLLLTARDAVEDRVLGLDSGADDYLTKPFAFAEFAARIRALVRR 136
>gi|119715983|ref|YP_922948.1| response regulator receiver [Nocardioides sp. JS614]
gi|119536644|gb|ABL81261.1| response regulator receiver [Nocardioides sp. JS614]
Length = 123
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+DD D+R + L G++VV+ ++GA+A + + + L + D++MP + G++
Sbjct: 3 RILVADDDVDIRELVEFKLSTLGHDVVAVSDGAAAIEACQAQRPDLAVLDVMMPGVSGLD 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DL V+ +T A + ++KPF R+L + V LLT
Sbjct: 63 AIRAIRADPALADLPVILLTARAQESDVETGFDSGADDYITKPFSPRELASRVQALLTR 121
>gi|42519762|ref|NP_965692.1| two-component system response regulator [Lactobacillus johnsonii
NCC 533]
gi|116630289|ref|YP_815511.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
gi|227889299|ref|ZP_04007104.1| response regulator [Lactobacillus johnsonii ATCC 33200]
gi|238853710|ref|ZP_04644077.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
gi|268320126|ref|YP_003293782.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
gi|300362908|ref|ZP_07059078.1| response regulator [Lactobacillus gasseri JV-V03]
gi|41584052|gb|AAS09658.1| two-component system response regulator [Lactobacillus johnsonii
NCC 533]
gi|116095871|gb|ABJ61023.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus gasseri ATCC 33323]
gi|227850101|gb|EEJ60187.1| response regulator [Lactobacillus johnsonii ATCC 33200]
gi|238833646|gb|EEQ25916.1| regulatory protein VanR [Lactobacillus gasseri 202-4]
gi|262398501|emb|CAX67515.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
gi|300352958|gb|EFJ68836.1| response regulator [Lactobacillus gasseri JV-V03]
gi|329668013|gb|AEB93961.1| two-component system response regulator [Lactobacillus johnsonii
DPC 6026]
Length = 228
Score = 140 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ DI+MP+M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEALTKLSTNPEIALMILDIMMPQMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D ++ ++ ++ + + KPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSEIPILVVSAKTSDMDKIQGLITGADDYVVKPFNPLEVMARVRSLLRR 118
>gi|319892417|ref|YP_004149292.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
HKU10-03]
gi|317162113|gb|ADV05656.1| Putative response regulator ArlR [Staphylococcus pseudintermedius
HKU10-03]
gi|323464480|gb|ADX76633.1| two-component response regulator ArlR [Staphylococcus
pseudintermedius ED99]
Length = 225
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ ED+ ++ RF+ YEV +G S ++ + F L+L D+++PEMDG+
Sbjct: 2 KKVLIIEDEQNLARFIELEFKHENYEVEVKYDGVSGLNRALQHDFDLILLDLMLPEMDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ +R D ++ IT + + KPF + +L+ L+
Sbjct: 62 EVCKRLRTQ-KDTPIIMITAKGEIYDKVTGLDIGADDYIVKPFEIEELLARSRALIRR 118
>gi|297544230|ref|YP_003676532.1| winged helix family two component transcriptional regulator
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842005|gb|ADH60521.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QK+L+ ED++ MR L L GYEV+ NG + ++L DI++P++ G
Sbjct: 2 QKVLVIEDEEGMRDILKTYLENNGYEVLVAENGKIGLEYFNNNKDIGIILLDIMLPDISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + VM IT + KPF +++V V +L
Sbjct: 62 WSLLKTIREK-SKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPKEVVARVKAILAR 119
>gi|256829709|ref|YP_003158437.1| winged helix family two component transcriptional regulator
[Desulfomicrobium baculatum DSM 4028]
gi|256578885|gb|ACU90021.1| two component transcriptional regulator, winged helix family
[Desulfomicrobium baculatum DSM 4028]
Length = 227
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ D+ ++ L GY V +G + L++ D+++P +DG +
Sbjct: 2 RILIVEDNSDILANVLDYLQLKGYTVDCAQDGLGGLHLAVTHAYDLIVLDVMLPGIDGYQ 61
Query: 64 LARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L KPF L +L + +L
Sbjct: 62 ICKRLREDAKLDIPVIMLTARDTLDDRIQGFNTGTDDYLVKPFALSELHARIQAVLRR 119
>gi|224026502|ref|ZP_03644868.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM
18228]
gi|224019738|gb|EEF77736.1| hypothetical protein BACCOPRO_03259 [Bacteroides coprophilus DSM
18228]
Length = 1330
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ +R FL+++L + Y V NG A + ++ + L+L+D++MP MDG EL
Sbjct: 1076 ILIVEDNISLRAFLMQSLSET-YRVEGAGNGQEALELIQNQQPDLVLSDVMMPIMDGQEL 1134
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T K + KPF L L+ ++ +L +
Sbjct: 1135 CKNLKSNIETSHIPIILLTALGDKEYILKGLGNKADLYIVKPFDLTVLLANISNVLENR 1193
>gi|255971801|ref|ZP_05422387.1| two-component system response regulator [Enterococcus faecalis T1]
gi|256958081|ref|ZP_05562252.1| two-component system response regulator [Enterococcus faecalis DS5]
gi|256963908|ref|ZP_05568079.1| two-component system response regulator [Enterococcus faecalis
HIP11704]
gi|257079968|ref|ZP_05574329.1| two-component system response regulator [Enterococcus faecalis JH1]
gi|257417030|ref|ZP_05594024.1| two-component system response regulator [Enterococcus faecalis
AR01/DG]
gi|294779527|ref|ZP_06744922.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
gi|300861078|ref|ZP_07107165.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
gi|307268332|ref|ZP_07549713.1| regulatory protein VanR [Enterococcus faecalis TX4248]
gi|307272098|ref|ZP_07553361.1| regulatory protein VanR [Enterococcus faecalis TX0855]
gi|307276158|ref|ZP_07557289.1| regulatory protein VanR [Enterococcus faecalis TX2134]
gi|307286853|ref|ZP_07566935.1| regulatory protein VanR [Enterococcus faecalis TX0109]
gi|312951112|ref|ZP_07770017.1| regulatory protein VanR [Enterococcus faecalis TX0102]
gi|255962819|gb|EET95295.1| two-component system response regulator [Enterococcus faecalis T1]
gi|256948577|gb|EEU65209.1| two-component system response regulator [Enterococcus faecalis DS5]
gi|256954404|gb|EEU71036.1| two-component system response regulator [Enterococcus faecalis
HIP11704]
gi|256987998|gb|EEU75300.1| two-component system response regulator [Enterococcus faecalis JH1]
gi|257158858|gb|EEU88818.1| two-component system response regulator [Enterococcus faecalis
ARO1/DG]
gi|294453406|gb|EFG21813.1| regulatory protein VanR [Enterococcus faecalis PC1.1]
gi|295113733|emb|CBL32370.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Enterococcus sp. 7L76]
gi|300850117|gb|EFK77867.1| putative Response regulator SaeR [Enterococcus faecalis TUSoD Ef11]
gi|306502068|gb|EFM71354.1| regulatory protein VanR [Enterococcus faecalis TX0109]
gi|306507152|gb|EFM76291.1| regulatory protein VanR [Enterococcus faecalis TX2134]
gi|306511214|gb|EFM80221.1| regulatory protein VanR [Enterococcus faecalis TX0855]
gi|306515358|gb|EFM83892.1| regulatory protein VanR [Enterococcus faecalis TX4248]
gi|310630888|gb|EFQ14171.1| regulatory protein VanR [Enterococcus faecalis TX0102]
gi|315036301|gb|EFT48233.1| regulatory protein VanR [Enterococcus faecalis TX0027]
gi|315154148|gb|EFT98164.1| regulatory protein VanR [Enterococcus faecalis TX0031]
gi|315158989|gb|EFU03006.1| regulatory protein VanR [Enterococcus faecalis TX0312]
gi|315166289|gb|EFU10306.1| regulatory protein VanR [Enterococcus faecalis TX1302]
gi|315171873|gb|EFU15890.1| regulatory protein VanR [Enterococcus faecalis TX1342]
gi|323481725|gb|ADX81164.1| response regulator vanRG [Enterococcus faecalis 62]
gi|327536016|gb|AEA94850.1| response regulator [Enterococcus faecalis OG1RF]
Length = 234
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++ILL +D+ ++ L L GYEV G A + + F L + D+++P++D
Sbjct: 1 MAERILLVDDEQEIADLLEVYLTSDGYEVEKFYRGKPALESMANNQFDLAVLDVMLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++A E ++ +T ++KPF+ ++V + L
Sbjct: 61 GFQMVKKAREKY-FFPIILLTAKIEDIDKITGLTLGADDYITKPFNPLEVVARIKTQLRR 119
>gi|187934136|ref|YP_001885585.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187722289|gb|ACD23510.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V NG+ + + EE +++ D++MP +DG ++
Sbjct: 4 VLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDGFQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ ++ + + + KPF+ +L+ V +
Sbjct: 64 CMKIRKDY-NIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRR 118
>gi|148825749|ref|YP_001290502.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
gi|148715909|gb|ABQ98119.1| transcriptional regulatory protein [Haemophilus influenzae PittEE]
Length = 221
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L L K G+ V +G + + P+ ++ D+ +P++DG+E
Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+ +T + L KPF L ++ + L+ +
Sbjct: 62 VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFTLAEVAARLQALIRRR 119
>gi|90414906|ref|ZP_01222870.1| transcriptional regulatory protein CpxR [Photobacterium profundum
3TCK]
gi|90323962|gb|EAS40558.1| transcriptional regulatory protein CpxR [Photobacterium profundum
3TCK]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L L G+++V NNG K+ + L+L D++MP+M+G +
Sbjct: 3 KILLVDDDVELTSLLTDILEMEGFDIVEANNGIEGLAKI-DTSIDLILLDVMMPKMNGTQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E V+ +T L KPF R+L+ + +L
Sbjct: 62 MLRKLRESFA-TPVLMLTAKGEEIDRVLGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|77460200|ref|YP_349707.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
gi|77384203|gb|ABA75716.1| histidine kinase [Pseudomonas fluorescens Pf0-1]
Length = 778
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + LGK G +VV +G A D++ + F L+L D MP MDG E
Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGVEALDQLEHDEFDLVLMDCNMPVMDGYE 715
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R+ + P L ++ +T A A + L+KPF +L +++ +
Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELAALLDQWI 772
>gi|53716914|ref|YP_105697.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
23344]
gi|53722061|ref|YP_111046.1| transcriptional activator protein [Burkholderia pseudomallei
K96243]
gi|76818559|ref|YP_335189.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
1710b]
gi|121596825|ref|YP_989627.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
gi|124381657|ref|YP_001024226.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
gi|126444012|ref|YP_001062520.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
668]
gi|126445741|ref|YP_001078366.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
gi|126456086|ref|YP_001075473.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
gi|134283471|ref|ZP_01770171.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
gi|167003030|ref|ZP_02268820.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
gi|167723508|ref|ZP_02406744.1| transcriptional activator IrlR [Burkholderia pseudomallei DM98]
gi|167742474|ref|ZP_02415248.1| transcriptional activator IrlR [Burkholderia pseudomallei 14]
gi|167819642|ref|ZP_02451322.1| transcriptional activator IrlR [Burkholderia pseudomallei 91]
gi|167828025|ref|ZP_02459496.1| transcriptional activator IrlR [Burkholderia pseudomallei 9]
gi|167849481|ref|ZP_02474989.1| transcriptional activator IrlR [Burkholderia pseudomallei B7210]
gi|167898085|ref|ZP_02485487.1| transcriptional activator IrlR [Burkholderia pseudomallei 7894]
gi|167906419|ref|ZP_02493624.1| transcriptional activator IrlR [Burkholderia pseudomallei NCTC
13177]
gi|167914754|ref|ZP_02501845.1| transcriptional activator IrlR [Burkholderia pseudomallei 112]
gi|167922645|ref|ZP_02509736.1| transcriptional activator IrlR [Burkholderia pseudomallei BCC215]
gi|217419095|ref|ZP_03450602.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
gi|226199348|ref|ZP_03794907.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
9]
gi|237509707|ref|ZP_04522422.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
MSHR346]
gi|238562934|ref|ZP_00439668.2| transcriptional activator protein IrlR [Burkholderia mallei GB8
horse 4]
gi|242312627|ref|ZP_04811644.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
gi|254174272|ref|ZP_04880934.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
gi|254183534|ref|ZP_04890126.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
gi|254190152|ref|ZP_04896661.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
52237]
gi|254193175|ref|ZP_04899610.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
gi|254200501|ref|ZP_04906866.1| transcriptional activator IrlR [Burkholderia mallei FMH]
gi|254204526|ref|ZP_04910879.1| transcriptional activator IrlR [Burkholderia mallei JHU]
gi|254263255|ref|ZP_04954120.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
gi|254300419|ref|ZP_04967865.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
gi|254356844|ref|ZP_04973119.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
gi|55977758|sp|O31395|IRLR_BURPS RecName: Full=Transcriptional activator protein irlR
gi|52212475|emb|CAH38501.1| transcriptional activator protein [Burkholderia pseudomallei
K96243]
gi|52422884|gb|AAU46454.1| DNA-binding response regulator IrlR [Burkholderia mallei ATCC
23344]
gi|76583032|gb|ABA52506.1| DNA-binding response regulator IrlR [Burkholderia pseudomallei
1710b]
gi|121224623|gb|ABM48154.1| transcriptional activator IrlR [Burkholderia mallei SAVP1]
gi|124289677|gb|ABM98946.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10229]
gi|126223503|gb|ABN87008.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
668]
gi|126229854|gb|ABN93267.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106a]
gi|126238595|gb|ABO01707.1| transcriptional activator IrlR [Burkholderia mallei NCTC 10247]
gi|134245220|gb|EBA45314.1| transcriptional activator IrlR [Burkholderia pseudomallei 305]
gi|147748113|gb|EDK55188.1| transcriptional activator IrlR [Burkholderia mallei FMH]
gi|147754112|gb|EDK61176.1| transcriptional activator IrlR [Burkholderia mallei JHU]
gi|148025871|gb|EDK83994.1| transcriptional activator IrlR [Burkholderia mallei 2002721280]
gi|157809906|gb|EDO87076.1| transcriptional activator IrlR [Burkholderia pseudomallei 406e]
gi|157937829|gb|EDO93499.1| transcriptional activator IrlR [Burkholderia pseudomallei Pasteur
52237]
gi|160695318|gb|EDP85288.1| transcriptional activator IrlR [Burkholderia mallei ATCC 10399]
gi|169649929|gb|EDS82622.1| transcriptional activator IrlR [Burkholderia pseudomallei S13]
gi|184214067|gb|EDU11110.1| transcriptional activator IrlR [Burkholderia pseudomallei 1655]
gi|217398399|gb|EEC38414.1| transcriptional activator IrlR [Burkholderia pseudomallei 576]
gi|225928563|gb|EEH24591.1| transcriptional activator IrlR [Burkholderia pseudomallei Pakistan
9]
gi|235001912|gb|EEP51336.1| transcriptional activator protein IrlR [Burkholderia pseudomallei
MSHR346]
gi|238521676|gb|EEP85126.1| transcriptional activator protein IrlR [Burkholderia mallei GB8
horse 4]
gi|242135866|gb|EES22269.1| transcriptional activator IrlR [Burkholderia pseudomallei 1106b]
gi|243061379|gb|EES43565.1| transcriptional activator IrlR [Burkholderia mallei PRL-20]
gi|254214257|gb|EET03642.1| transcriptional activator IrlR [Burkholderia pseudomallei 1710a]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AG+ +G + + E + L++ D+++P DG
Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + KPF +LV V +L
Sbjct: 62 VLERLRRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>gi|85711044|ref|ZP_01042104.1| Flagellar biosynthesis protein [Idiomarina baltica OS145]
gi|85694957|gb|EAQ32895.1| Flagellar biosynthesis protein [Idiomarina baltica OS145]
Length = 461
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 59/113 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +R + L A Y+ + +NG SA ++++ L+++D+ MP M+G++L
Sbjct: 6 ILIVEDDAALREAITDTLELAHYQCLHADNGESALLQLKKHRIDLVVSDVQMPGMNGLQL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R L D+ V+ +T +A V + LSKPF + +L V R
Sbjct: 66 LRNIKHLKIDVPVVMMTAYAKVDDAVVAMREGAVDYLSKPFSIDELTQLVQRH 118
>gi|91975146|ref|YP_567805.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
gi|91681602|gb|ABE37904.1| response regulator receiver [Rhodopseudomonas palustris BisB5]
Length = 240
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R+ L LG GYEV+ +NG A + +++ +L++ D+ +P++ G E
Sbjct: 7 KILIVDDEPPIRKLLRMGLGTQGYEVLEASNGKIALELLKQG-PALIILDLGLPDIQGHE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + + ++ ++ A ++ L+KPF + +L+ + L +
Sbjct: 66 LLRMIRGRNDSVPIVVLSSRGDEAGKVEALDLGADDYLTKPFGMDELLARMRAALRHQ 123
>gi|116048852|ref|YP_792347.1| two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|296390718|ref|ZP_06880193.1| two-component response regulator [Pseudomonas aeruginosa PAb1]
gi|115584073|gb|ABJ10088.1| two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 239
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ ++ A + L KPF L +L ++ +L
Sbjct: 70 ILRQLRQEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 125
>gi|332882614|ref|ZP_08450226.1| fused DNA-binding response regulator in twresponse
regulator/sigma54 interaction protein [Capnocytophaga
sp. oral taxon 329 str. F0087]
gi|332679414|gb|EGJ52399.1| fused DNA-binding response regulator in twresponse
regulator/sigma54 interaction protein [Capnocytophaga
sp. oral taxon 329 str. F0087]
Length = 387
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M KIL+ ED+ +RR L K L + YEV ++G +K++++ + L+L DI MP+
Sbjct: 1 MT-KILIIEDESAIRRVLSKILQEESKEYEVFEASDGIEGLEKLKKDDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ A ++ P++ + I+G + ++ +SKP L L+N V L
Sbjct: 60 MDGLEVLTEAKKIKPEVPFVMISGHGDLETAVNAMRLGAYDYISKPPDLNRLLNTVRNAL 119
Query: 119 TIK 121
+
Sbjct: 120 DKQ 122
>gi|330991343|ref|ZP_08315294.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
SXCC-1]
gi|329761362|gb|EGG77855.1| Transcriptional regulatory protein ChvI [Gluconacetobacter sp.
SXCC-1]
Length = 236
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I+L +DD ++ + L G+ V + +G SA + P L + DI MP MDG
Sbjct: 5 KQTIVLVDDDRNILTSVQMTLEAEGFIVRTYTDGESALHGLSSRPADLAVLDIKMPRMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL +R L V+F++ ++KPF R L+ + LL
Sbjct: 65 MELLQRLRAR-SQLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRR 122
>gi|302340322|ref|YP_003805528.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
11293]
gi|301637507|gb|ADK82934.1| response regulator receiver protein [Spirochaeta smaragdinae DSM
11293]
Length = 374
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Query: 1 MNQK----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN+K IL+ +D + L L K GY + + +G A + ++ + F L+L DI M
Sbjct: 1 MNEKEYWNILIVDDTRNNLFILSSILRKKGYRIAAALSGLEAIELLQHKQFDLILLDIRM 60
Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
P ++GIE +R ++ V+FI+ L ++ A + KPF +L+ +
Sbjct: 61 PGINGIETCKRIKATPETAEIPVLFISAIDDHDLIAEAFAAGGRDYILKPFEPVELIARI 120
Query: 115 NRLLTIK 121
L I+
Sbjct: 121 ETQLDIQ 127
>gi|255533889|ref|YP_003094261.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255346873|gb|ACU06199.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 1374
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ ++R + L + Y V G A + + L+++D++MP+M+G+EL
Sbjct: 1119 ILLVEDEPELRYLIRNVLKEQ-YVVYEAGTGVEALAFLYKTLPDLIISDVMMPDMNGLEL 1177
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + + + ++ + + + KPF + L+ + +LL
Sbjct: 1178 CRTVKQTPAMAQIPFVILSARGSEDNKAEGYELGADAYIPKPFQINYLLVRIRKLL 1233
>gi|110597758|ref|ZP_01386042.1| Response regulator receiver:Transcriptional regulatory protein-like
[Chlorobium ferrooxidans DSM 13031]
gi|110340665|gb|EAT59145.1| Response regulator receiver:Transcriptional regulatory protein-like
[Chlorobium ferrooxidans DSM 13031]
Length = 222
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + RFL L + + V ++G + D + LL+ D ++P + GIE
Sbjct: 2 RLLIIEDEPGIARFLKDGLEEEYFAVDLAHDGKTGLDMAMTNEYDLLIIDWMIPALSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + ++F+T + + KPF +L+ + L N
Sbjct: 62 VCRQVRKGGSTVPILFLTAKDTLEDVVFGLDAGANDYIKKPFEFEELLARIRVQLRTTN 120
>gi|315607847|ref|ZP_07882840.1| two component system sensor histidine kinase/response regulator
[Prevotella buccae ATCC 33574]
gi|315250316|gb|EFU30312.1| two component system sensor histidine kinase/response regulator
[Prevotella buccae ATCC 33574]
Length = 869
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 1 MNQKI-----------LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSL 49
M +KI L+ +D+ D+R +++ L Y V +G K + L
Sbjct: 611 MTEKITRPGEKEKPSLLVIDDNPDIRSYVMTLL-GNDYNVEQAADGREGLHKAMRDVPDL 669
Query: 50 LLTDIVMPEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHL 107
++ D++MP MDG+E RR + + V+ +T + L+KPF
Sbjct: 670 IICDVMMPVMDGLEFCRRVKHDVITSHIPVLLLTARTLEEQRVEGYDYGADAYLTKPFSG 729
Query: 108 RDLVNEVNRLLTIK 121
L + V LL +
Sbjct: 730 EVLKSRVRNLLDNR 743
>gi|298247520|ref|ZP_06971325.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297550179|gb|EFH84045.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + + L + Y + +NG A EP+ L++ D+++P+MDG +
Sbjct: 2 RILIAEDDLFVGESMKTGLERQRYVIDLVDNGKQALALGGLEPYDLVILDVLLPDMDGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R E + ++F+T V + L+KPF R+L V LL +
Sbjct: 62 ICRTLREQGQTMPILFLTALDGVDYRVNGLDIGGDDYLTKPFAFRELEARVRALLRRE 119
>gi|229821566|ref|YP_002883092.1| two component transcriptional regulator [Beutenbergia cavernae DSM
12333]
gi|229567479|gb|ACQ81330.1| two component transcriptional regulator, winged helix family
[Beutenbergia cavernae DSM 12333]
Length = 233
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DDD + L + L AG+ +G A ++ R L++ D ++P +DG+
Sbjct: 9 RRVLIVDDDDALVGVLAEYLRAAGFVTSVAGDGLGAVERTRSWEPDLIVLDRMLPGIDGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + D ++ +T ++KPF R+LV + +L
Sbjct: 69 EVTRRVRAIC-DAPIIMLTALGTGDDRIAGLEVGADDYVTKPFSPRELVLRIQSVLRR 125
>gi|116623300|ref|YP_825456.1| two component sigma54-specific Fis family transcriptional regulator
[Candidatus Solibacter usitatus Ellin6076]
gi|116226462|gb|ABJ85171.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Candidatus Solibacter usitatus Ellin6076]
Length = 454
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R L K GY A + ++ F + L DI MP MDG+E
Sbjct: 16 RILIVDDELVVRDSLGKWFSSEGYSARPVGGAREALEVIQHGEFDIALLDIKMPGMDGME 75
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E D DL ++ +TG+++V + ++KP +L + V+ L K
Sbjct: 76 LQARLREADSDLTIIMMTGYSSVETAVQALKQGAYDYITKPVDPDELSHLVSNALEHK 133
>gi|328953029|ref|YP_004370363.1| two component transcriptional regulator, winged helix family
[Desulfobacca acetoxidans DSM 11109]
gi|328453353|gb|AEB09182.1| two component transcriptional regulator, winged helix family
[Desulfobacca acetoxidans DSM 11109]
Length = 242
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ILL EDD ++RRFL L GYE++ G + L+L D+ +P+MD
Sbjct: 1 MKPSILLIEDDANIRRFLRLTLVTQGYELIEAETGQEGLAQAFARVPDLILLDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ ++ E + V+ ++ + L+KPF + +L+ + +L
Sbjct: 61 GIDIIKQIRE-WSQVPVIVLSARGQEREKIINLDAGADDYLTKPFGMGELLARIRVVLRR 119
>gi|317126129|ref|YP_004100241.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315590217|gb|ADU49514.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 248
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ + L+ +D+ + R ++ L G+EV S +G +A D R +++ D+ +P MDG
Sbjct: 11 SPRALVVDDEPSLVRVVVGYLQAGGFEVDSAPDGPTALDLARRTDPDVIVLDVGLPGMDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
IE+ R D V+ +T A A ++KPF R+L+ V +L
Sbjct: 71 IEVCRTLRTFT-DAYVVMLTARADEVDMLIGLAVGADDYITKPFSPRELMARVQTVLRR 128
>gi|296116946|ref|ZP_06835548.1| two component response regulator PhoB [Gluconacetobacter hansenii
ATCC 23769]
gi|295976512|gb|EFG83288.1| two component response regulator PhoB [Gluconacetobacter hansenii
ATCC 23769]
Length = 261
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AEDD+ + + L AGYEV + +G A ++V LL+ D ++P + G++
Sbjct: 20 KILVAEDDEALSVLVTYNLEAAGYEVRAVADGLDALEQVGSWQPDLLVLDWMLPGLSGVD 79
Query: 64 LARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR D+ V+ +T A + + + L+KP + L V LL
Sbjct: 80 LCRRLRARGGAMCDMPVLMLTARTAESDSVHALDTGADDYLTKPCGMEALNARVRALLRR 139
>gi|260752397|ref|YP_003225290.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258551760|gb|ACV74706.1| two component transcriptional regulator, winged helix family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 241
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+Q I++ EDD +R + + L + GY +G +++++ L+L D+++P +G
Sbjct: 3 SQTIMIVEDDASLRALIARVLKENGYIPCPVGSGEEMWEELQSRTVDLILMDVMLPGKNG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L R + V+F++ + KPF ++LV V +L
Sbjct: 63 LDLTRELRSNSQYMAIPVIFLSARDDETDRVVGLELGGDDYIPKPFGKKELVARVRAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|225405844|ref|ZP_03761033.1| hypothetical protein CLOSTASPAR_05065 [Clostridium asparagiforme
DSM 15981]
gi|225042626|gb|EEG52872.1| hypothetical protein CLOSTASPAR_05065 [Clostridium asparagiforme
DSM 15981]
Length = 216
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 60/114 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AEDD DM++ L L + GY+V + +GA+A D + E L++ D +MP +G++
Sbjct: 2 KVLIAEDDPDMQKILGLYLRREGYQVDAVGDGAAAVDFLAERQVDLVVLDWMMPVQNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R L+ +K++ +T + L KPF ++ L+ V +L
Sbjct: 62 TCREIRRLNIPVKILMLTAKGQNEDEIAGLSCGADDYLRKPFDMQVLLLRVKKL 115
>gi|217978047|ref|YP_002362194.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
gi|217503423|gb|ACK50832.1| adenylate/guanylate cyclase [Methylocella silvestris BL2]
Length = 403
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +D + ++ L GYE+++ ++G K R L+L DI+MP++DGI
Sbjct: 22 RILAVDDVAENLEIVVVRLEAHGYEIITASDGEEGLAKARAIKPDLILLDIMMPKLDGIS 81
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T A L+KPF LV V +L IK
Sbjct: 82 VLKELKRDENLGFIPVILLTAKADRTDLVAGLDAGADDYLTKPFDQSALVARVRSMLRIK 141
>gi|209884911|ref|YP_002288768.1| response regulator protein [Oligotropha carboxidovorans OM5]
gi|209873107|gb|ACI92903.1| response regulator protein [Oligotropha carboxidovorans OM5]
Length = 457
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + L L ++VV+ + G A D R ++L D++MP++D
Sbjct: 1 MSARVLVVDDVPANVKLLEARLSAEYFDVVTASCGREALDICRRAECDIVLLDVMMPDID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R+ + V+ +T + A L+KP L+ V L
Sbjct: 61 GFEVCRQLKSDPRTHFIPVVMVTALDSPADRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 73.2 bits (180), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 40/111 (36%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED L L + + V + A A + + LL+ + + DG+
Sbjct: 157 RILLVEDRPSSYERLAPILAEE-HTVDVEPDPAQALFHAADGNYDLLIVSLNLENYDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L +A E ++ ++ ++ L +P +L+
Sbjct: 216 LCSQARSLERTRNVPLLALSNADNNVQLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|170684671|ref|ZP_02875896.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
gi|254685761|ref|ZP_05149620.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066]
gi|170670931|gb|EDT21669.1| DNA-binding response regulator [Bacillus anthracis str. A0465]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ D++ L+K L Y V +C NG A D + + L++ DI++P ++G++
Sbjct: 2 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + V+ +T + L KPF +L+ + L+ K
Sbjct: 62 VLQKLRADNHTTSVLLLTAKDTIDGRVKGLDLGADDYLVKPFAFDELLARIRVLMRRK 119
>gi|50841845|ref|YP_055072.1| response regulator [Propionibacterium acnes KPA171202]
gi|282853420|ref|ZP_06262757.1| response regulator receiver domain protein [Propionibacterium acnes
J139]
gi|50839447|gb|AAT82114.1| response regulator [Propionibacterium acnes KPA171202]
gi|282582873|gb|EFB88253.1| response regulator receiver domain protein [Propionibacterium acnes
J139]
gi|314922289|gb|EFS86120.1| response regulator receiver domain protein [Propionibacterium acnes
HL001PA1]
gi|314965397|gb|EFT09496.1| response regulator receiver domain protein [Propionibacterium acnes
HL082PA2]
gi|314982508|gb|EFT26601.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA3]
gi|315091052|gb|EFT63028.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA4]
gi|315094140|gb|EFT66116.1| response regulator receiver domain protein [Propionibacterium acnes
HL060PA1]
gi|315104789|gb|EFT76765.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA2]
gi|315106404|gb|EFT78380.1| response regulator receiver domain protein [Propionibacterium acnes
HL030PA1]
gi|327329342|gb|EGE71102.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
HL103PA1]
Length = 226
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ R L K G+EV + NGA + ++L D++MP +
Sbjct: 1 MT-RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSRNGADIVLLDLMMPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ +T + ++KPF R+LV + +
Sbjct: 60 GTEVCRQLRQRG-NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRR 118
>gi|24376120|ref|NP_720163.1| DNA-binding response regulator [Shewanella oneidensis MR-1]
gi|24351154|gb|AAN57607.1|AE015896_5 DNA-binding response regulator [Shewanella oneidensis MR-1]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L + L A Y + ++G + E + + D+ +P++DGI
Sbjct: 2 RLLLVEDDVALQTNLKQHLLDAHYSIDVASDGEEGLFQAVEYNYDAAIIDVGLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + ++ +T + + L+KPFH +LV + L+
Sbjct: 62 LIRRIRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>gi|134299175|ref|YP_001112671.1| two component sigma-54 specific Fis family transcriptional
regulator [Desulfotomaculum reducens MI-1]
gi|134051875|gb|ABO49846.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfotomaculum reducens MI-1]
Length = 455
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++L+ +D++ +R+FL L + Y+V + NG DK+ + +L+TDI MPE DG
Sbjct: 3 KKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
L + ++ V+ +T F + + + KPF L + ++ + R
Sbjct: 63 FGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRA 118
>gi|109899128|ref|YP_662383.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
atlantica T6c]
gi|109701409|gb|ABG41329.1| periplasmic sensor hybrid histidine kinase [Pseudoalteromonas
atlantica T6c]
Length = 720
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ ED++ + L AGY++V +G A E + L+L D+ MP MDGI
Sbjct: 603 HKILIVEDNEINAEVVKVMLEGAGYQIVIATDGEKALQACIFEQYDLILMDMHMPVMDGI 662
Query: 63 ELARRATELDPDL-KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ ++ ++ A V +SKP + L+ + R +
Sbjct: 663 TATQKLRREMNFTNPIIALSANAFVEDREHCIEAGMNDFISKPVEKQALLATIKRHIK 720
Score = 52.1 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 3/113 (2%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
+ +D R ++ + G + +N F +LL D+ MPE+ G+++
Sbjct: 474 IVDDLQTSREYIQHIVTSLGCLPNTFDNAEDFLAS-DISQFDVLLLDLSMPEITGVDVVE 532
Query: 67 RATELD-PDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ L ++ ++ S + +KP ++L +++ +L
Sbjct: 533 TLRDRQLSKLPHIIIVSAVIEHLDCSTSVRDLIWRTHAKPIVRQELESDLKKL 585
>gi|317500739|ref|ZP_07958956.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089783|ref|ZP_08338677.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316897832|gb|EFV19886.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|330403666|gb|EGG83221.1| hypothetical protein HMPREF1025_02260 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 239
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +++ +D+ ++ + + L GY V+ +G A + + + P L+L D++MP ++
Sbjct: 7 MGEVVMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLN 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + E + V+ ++ + + KP++ +L+ V L
Sbjct: 67 GLSALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRR 125
>gi|309791544|ref|ZP_07686043.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308226404|gb|EFO80133.1| two component transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 228
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ +D+ + + + L + G V + +G +A + ++P L+L D+ +P++DG
Sbjct: 2 QRLLIVDDEPAIVTVIRERLEREGLHVQTVGSGEAALHLLNQQPIDLVLLDVGLPDIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
E+ RR D D V+ +T + KPF +R+LV
Sbjct: 62 EVLRRLRAHDLDTPVLLLTARGDEIDRVVGLELGADDYVVKPFSVRELV 110
>gi|218261685|ref|ZP_03476420.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
18315]
gi|218223865|gb|EEC96515.1| hypothetical protein PRABACTJOHN_02088 [Parabacteroides johnsonii DSM
18315]
Length = 1304
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++ ED+ ++R +L L + EV +G A + ++ + L+++D++MP M+G E
Sbjct: 1055 TVMIVEDEPELRNYLKDELSGSFKEVYVAEDGRQALEMIQAKLPDLVVSDVMMPYMNGFE 1114
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T + KPF L L+ + L +
Sbjct: 1115 LCRRIKSDVGISHIPVILLTARTDNESTVQGYKLGADMYVPKPFDLGFLLAVLRNQLKSR 1174
>gi|254380481|ref|ZP_04995847.1| turgor pressure regulator [Streptomyces sp. Mg1]
gi|194339392|gb|EDX20358.1| turgor pressure regulator [Streptomyces sp. Mg1]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + R L+ L Y+V +G +A + V +L D+ +P+MD
Sbjct: 1 MMPRVLVVDDEPQLARLLVINLKARKYDVDCAQDGGTALETVATCRPDAVLLDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ + V+ ++ + ++KPF + +L+ + ++
Sbjct: 61 GIEVIKQLRG-WSQVPVLVVSARHGSEEKIQALDAGADDYITKPFSMDELMARLGAVIRR 119
>gi|188589410|ref|YP_001921180.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
gi|188499691|gb|ACD52827.1| regulatory protein VanR [Clostridium botulinum E3 str. Alaska E43]
Length = 237
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D+ ++ + L L K G+ V + + L++ DI++P+
Sbjct: 1 MNNKILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDG 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + ++ ++F++ A ++KPF +++ V L
Sbjct: 61 DGYEICKDIRSK-SNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|86159336|ref|YP_466121.1| two component transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775847|gb|ABC82684.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 245
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD + F + L G VV +G D+ F ++L D+++P DG+E+
Sbjct: 21 LLVEDDLRLAAFTREYLEGHGVAVVHVTDGRRGLDEALAGRFDVVLLDLMLPGKDGLEVC 80
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+ +T A L+KPF R+L+ + ++
Sbjct: 81 RELRSR-SDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRR 134
>gi|42519461|ref|NP_965391.1| two-component system response regulator [Lactobacillus johnsonii
NCC 533]
gi|41583749|gb|AAS09357.1| two-component system response regulator [Lactobacillus johnsonii
NCC 533]
gi|329667017|gb|AEB92965.1| two-component system response regulator [Lactobacillus johnsonii
DPC 6026]
Length = 221
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 56/112 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED++ + R L+ A+ YEV NG A + R+ + +++ DI+MP MDGI
Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYEVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + V+ +T A V L+KPF L++L+ +
Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|37676245|ref|NP_936641.1| response regulator [Vibrio vulnificus YJ016]
gi|37200786|dbj|BAC96611.1| response regulator [Vibrio vulnificus YJ016]
Length = 378
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + R L L Y V+ NG A + ++L DI+MPEMDG E
Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++F+T + + + KP L++ V L +K
Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKLK 125
Query: 122 N 122
+
Sbjct: 126 H 126
>gi|37522691|ref|NP_926068.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
gi|35213693|dbj|BAC91063.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
PCC 7421]
Length = 358
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D D + L GYE+ + ++GA +V + LLL D++MP MDG
Sbjct: 6 ERILVVDDLPDNIALVQFLLASEGYEIETASSGAECLARVYKNSPDLLLLDVMMPGMDGY 65
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P L ++ +T + + + KP +L+ V LL +
Sbjct: 66 EVTRRLKSDGHLPFLPILLVTA-SDRPSAVLGLDAGADEFIRKPIEPDELLARVRSLLRL 124
Query: 121 K 121
K
Sbjct: 125 K 125
>gi|330685400|gb|EGG97058.1| heme response regulator HssR [Staphylococcus epidermidis VCU121]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN + L+ +DD + ++ L + + + NG A + + + DI+M MD
Sbjct: 1 MN-RCLIVDDDPKILNYVSTHLEREHFHTYTHTNGEEALHFLDNHQVDIAIVDIMMHGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL E DL V+ +T A++ + L+KPF +++L+ + +L
Sbjct: 60 GFELCHMIKEDY-DLPVIMLTARDALSDKERAFISGTDDYLTKPFEVKELIFRIKAVLRR 118
Query: 121 KN 122
+
Sbjct: 119 YH 120
>gi|325928438|ref|ZP_08189629.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|325541155|gb|EGD12706.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
Length = 278
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 47 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 106
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 107 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 162
>gi|332162605|ref|YP_004299182.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318606705|emb|CBY28203.1| response regulator BaeR [Yersinia enterocolitica subsp. palearctica
Y11]
gi|325666835|gb|ADZ43479.1| DNA-binding transcriptional regulator BaeR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
Length = 239
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DG
Sbjct: 11 SGTVLIVEDEPKLGQLLVDYLQAAGYSTQWLTNGAEVVAAVRQSPPAIILLDLMLPGSDG 70
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R D+ +M +T + KP+ R++V V +L
Sbjct: 71 ISICREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|309775270|ref|ZP_07670279.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
gi|308916933|gb|EFP62664.1| DNA-binding response regulator [Erysipelotrichaceae bacterium
3_1_53]
Length = 233
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+AED+ + + L GY+ + NGA+A++ V P L + D++MP MD
Sbjct: 1 MSSVILIAEDEASIADAIEIYLKSQGYQTLKAANGAAAWEIVESTPVDLAIIDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L + E D ++ ++ + ++KPF +L+ V+ L
Sbjct: 61 GIALTMKIRETY-DFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRR 119
>gi|237718511|ref|ZP_04548992.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229452218|gb|EEO58009.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1333
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ EDD+++ +L + L + + SC NG A + + ++ F+L+++DI+MPEMDG
Sbjct: 1076 KYHVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDG 1134
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I L + + + ++ +T N A ++KPF L L + + L+
Sbjct: 1135 ISLCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLIQ 1194
Query: 120 IK 121
+
Sbjct: 1195 NR 1196
>gi|256824206|ref|YP_003148166.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
gi|256687599|gb|ACV05401.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Kytococcus sedentarius DSM 20547]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 6/125 (4%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MNQ +LL EDD+ +R L + G+ V + ++G D +R E F + + D++
Sbjct: 1 MNQTQTAVHVLLVEDDEMLRETTALVLERQGFTVSTASDGVEGLDALRRETFDVAVVDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MP MDGI AR+ E DL ++ +T ++KPF L +
Sbjct: 61 MPRMDGITFARKVRE-GSDLPIVLLTARDLPHDQLAGFQVGVDDYVTKPFDGEVLAARLR 119
Query: 116 RLLTI 120
+L
Sbjct: 120 AVLRR 124
>gi|258404995|ref|YP_003197737.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
retbaense DSM 5692]
gi|257797222|gb|ACV68159.1| multi-sensor signal transduction histidine kinase [Desulfohalobium
retbaense DSM 5692]
Length = 650
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 59/110 (53%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL +D++ +R+ L L +GY V + NG A + RE ++LTDI MP MD
Sbjct: 1 MDNALLLVDDEEGIRKVLGITLADSGYTVHTAANGNEALEVWREHRPGIVLTDIKMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
G+EL + DP+ +V+ ITG + +S A ++KP + L
Sbjct: 61 GLELLQALKAEDPETEVIMITGHGDMDSAIESLRNDAADFITKPINDEVL 110
>gi|167618487|ref|ZP_02387118.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
Bt4]
gi|257139729|ref|ZP_05587991.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
E264]
Length = 232
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 1 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 61 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 119
Query: 118 LTIKN 122
L +N
Sbjct: 120 LRRRN 124
>gi|160882542|ref|ZP_02063545.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483]
gi|156112123|gb|EDO13868.1| hypothetical protein BACOVA_00493 [Bacteroides ovatus ATCC 8483]
Length = 1333
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ EDD+++ +L + L + + SC NG A + + ++ F+L+++DI+MPEMDG
Sbjct: 1076 KYHVLIVEDDEEINEYLCREL-AEDFHLTSCGNGKEAIELLHKQSFNLVVSDIMMPEMDG 1134
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
I L + + + ++ +T N A ++KPF L L + + L+
Sbjct: 1135 ISLCKHIKQHLQFNHIPIILLTAKTRETDNITGLAVGADAYITKPFSLNILRSTILSLIQ 1194
Query: 120 IK 121
+
Sbjct: 1195 NR 1196
>gi|49082112|gb|AAT50456.1| PA0929 [synthetic construct]
Length = 240
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGGYDLILMDIMLPGRDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ ++ A + L KPF L +L ++ +L
Sbjct: 70 ILRQLRQEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 125
>gi|75910334|ref|YP_324630.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75704059|gb|ABA23735.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 440
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +D+ + L A+ G+E + +G SA ++ ++L D++MP +DG
Sbjct: 9 KATILIVDDNPTNLKVLSDAISSLGWEALIATDGESAIEEAEYAQPDIILLDVMMPGIDG 68
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+F+T ++KPF+L +++ + L
Sbjct: 69 FQTCTELKKKSSTKHIPVIFLTALTDQFDKVLGLVTGGVDYITKPFNLDEVLARIQVHLK 128
Query: 120 I 120
+
Sbjct: 129 L 129
>gi|27380234|ref|NP_771763.1| response regulator PleD [Bradyrhizobium japonicum USDA 110]
gi|27353388|dbj|BAC50388.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 457
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++V++ +NG A R ++L D++MP+MD
Sbjct: 1 MSARILVVDDVPANVKLLEARLSAEYFDVMTASNGTEALAISRRAECDIILLDVMMPDMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L+ V L
Sbjct: 61 GFEVCRRLKTDPATHHIPVVMVTALDSPSDRNRGLEAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.4 bits (170), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + V N A E + LL+ + + DG+
Sbjct: 157 RILLVDDRQSSYERLASLLAAE-HTVDVEPNPTEALFHAAEGNYDLLIVSLDLNNFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNP-DSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ I + L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAI-ADPENSTRLLRGLEIGVNDYLLRPIDKTELLA 266
>gi|152977294|ref|YP_001376811.1| two component transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152026046|gb|ABS23816.1| two component transcriptional regulator, winged helix family
[Bacillus cytotoxicus NVH 391-98]
Length = 221
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ D++ + + L Y+V G ++ + L+L D+++P++D
Sbjct: 1 MT-HILVIEDNPDIQELIREFLTAQNYKVDVAGTGTEGILLFQKNLYDLVLLDVMLPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + D+ ++ +TG ++KPFH + V +L
Sbjct: 60 GYSICKIIRGQ-SDVPIIMLTGLQNEENEIKGFELGVDDYITKPFHYAIFIKRVEAVLRR 118
>gi|114320304|ref|YP_741987.1| two component transcriptional regulator [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226698|gb|ABI56497.1| two component transcriptional regulator, winged helix family
[Alkalilimnicola ehrlichii MLHE-1]
Length = 247
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD +R L+ LG+ G E + +G + + + P LL+ D+++P D
Sbjct: 1 MQANILIVDDDPGLRELLVDYLGQNGLEARAVPDGTALWPALEAGPVDLLILDLMLPGDD 60
Query: 61 GIELARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+EL + D L V+ +T L KPF+ R+L+ + L
Sbjct: 61 GLELCGQLRAADAPWRTLPVIMLTARGEETDRIVGLELGADDYLPKPFNPRELLARIRGL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|320353584|ref|YP_004194923.1| response regulator receiver protein [Desulfobulbus propionicus DSM
2032]
gi|320122086|gb|ADW17632.1| response regulator receiver protein [Desulfobulbus propionicus DSM
2032]
Length = 715
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 61/117 (52%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ R + L K GY ++GA A + + E L++TD+ M MDGIEL
Sbjct: 126 ILIVDDEEIARANMEHVLKKEGYACHCASHGAEALEIMAREDIDLIITDLKMERMDGIEL 185
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P++ V+ +TGFA V+ D+ A L KP +L +L V +L K
Sbjct: 186 LQHVNRTSPEIPVIMVTGFATVSSAVDALKKGAAHYLGKPVNLDELRKTVKEVLEKK 242
>gi|242241356|ref|YP_002989537.1| nitrogen regulation protein NR(I) [Dickeya dadantii Ech703]
gi|242133413|gb|ACS87715.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Dickeya dadantii Ech703]
Length = 470
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALATQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|159899218|ref|YP_001545465.1| response regulator receiver modulated metal dependent
phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
gi|159892257|gb|ABX05337.1| response regulator receiver modulated metal dependent
phosphohydrolase [Herpetosiphon aurantiacus ATCC 23779]
Length = 328
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D+ L + L + Y V +G A ++ L+L D+ MP M+
Sbjct: 1 MSEIILVVDDEARSIDTLRRVLERERYTVRIARDGVEALADIQACMPDLVLLDVTMPVMN 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + + L V +TG ++KPF L+ + LL
Sbjct: 61 GFEVCRRLRDREETQLLPVAMLTGLNDDESRILGLEMGADDFINKPFERTVLLARIRSLL 120
Query: 119 TIK 121
++
Sbjct: 121 RVR 123
>gi|86609101|ref|YP_477863.1| sensor histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557643|gb|ABD02600.1| sensor histidine kinase/response regulator [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 413
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 56/114 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ R + AL + GY+V+ ++G + + P ++L D VMP++DG E
Sbjct: 34 VLVVDDERSQRLLVCYALEREGYQVLEASSGEACLQLAAQHPVDMVLLDAVMPDLDGFEC 93
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR + DL ++ +T + ++ A + +SKP L + L+
Sbjct: 94 CRRLHAQNSDLPILIVTALEDESCVDEAFAAGASDYISKPIRWAVLKRRIRHLI 147
>gi|75675624|ref|YP_318045.1| response regulator PleD [Nitrobacter winogradskyi Nb-255]
gi|74420494|gb|ABA04693.1| response regulator receiver modulated diguanylate cyclase
[Nitrobacter winogradskyi Nb-255]
Length = 457
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D R L L ++V++ +NGA A + ++L D++MP+MD
Sbjct: 1 MSARVLVVDDVPANVRLLEARLSAEYFDVLTASNGAQALETCARAECDIILLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ IT + L+KP L V L
Sbjct: 61 GFEVCRRLKANPATHFIPVVMITALDNPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 72.9 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + V + + A + E + LL+ + + DG+
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAVDVEADPSEALFRAAESNYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ + L +P +L+
Sbjct: 216 LCSQARSLERTRHVPILAVADADGSPRLLRGLEIGINDYLLRPIDRNELLA 266
>gi|38233301|ref|NP_939068.1| putative two component system response regulator [Corynebacterium
diphtheriae NCTC 13129]
gi|38199560|emb|CAE49211.1| Putative two component system response regulator [Corynebacterium
diphtheriae]
Length = 232
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 1/111 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD + L L G+E V+ +GA A D R E L+L D+++P M+
Sbjct: 8 MAPKILVVDDDPAISEMLTIVLEAEGFEPVAVTDGAVAVDAFRTESPDLVLLDLMLPGMN 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
GI++ R + + ++ +T ++KPF ++L+
Sbjct: 68 GIDICRIIRQE-SAVPIVMLTAKTDTVDVVLGLESGADDYINKPFKPKELI 117
>gi|332140773|ref|YP_004426511.1| response regulator in two-component regulatory system with PhoQ
[Alteromonas macleodii str. 'Deep ecotype']
gi|327550795|gb|AEA97513.1| response regulator in two-component regulatory system with PhoQ
[Alteromonas macleodii str. 'Deep ecotype']
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L L + GY V +NG A ++E + L + DI MP++DG E
Sbjct: 2 RILVAEDDSRLLTQLDALLQQNGYSVDLADNGEHALFLIKEYDYDLAIVDIGMPKLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+A + D ++ +T + L+KPFH +L+ L+
Sbjct: 62 VIRKARQADISCPILILTARDRWQEKVEGLDAGADDYLTKPFHNEELLARTKALIRR 118
>gi|313158368|gb|EFR57767.1| putative sensory transduction protein RegX3 [Alistipes sp. HGB5]
Length = 226
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ +D++ + L L GYEV + + A E +SL+L D++M EM
Sbjct: 1 MTKHKILVVDDEESLCEILQFNLEVEGYEVDTAYSAEQALGM-HPERYSLILLDVMMGEM 59
Query: 60 DGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G ++AR+ + ++F T ++KPF +R+++ V +
Sbjct: 60 SGFKMARQLRAQPETAAVPIIFCTAKDTEDDTVAGLNIGADDYIAKPFSVREVLARVRSV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|238925636|ref|YP_002939153.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
gi|238877312|gb|ACR77019.1| hypothetical protein EUBREC_3293 [Eubacterium rectale ATCC 33656]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD ++ K L K+GY+V S ++GA A + + E L+++DI+MP MDG E
Sbjct: 3 KILIVEDDKELSLLFQKVLEKSGYQVKSASDGAQALEVLDREYIDLIISDIMMPVMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ IT ++ + + KP ++ ++V V LL
Sbjct: 63 LVSELRSAGYQIPVLMITAKSSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 119
>gi|225567891|ref|ZP_03776916.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
15053]
gi|225163292|gb|EEG75911.1| hypothetical protein CLOHYLEM_03964 [Clostridium hylemonae DSM
15053]
Length = 236
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +R + L Y+ ++ NG+ A ++L D+ +P+MDG+++
Sbjct: 9 VLVVEDDAPVRNLITTTLESQNYKYMTSANGSQAVMSAASGNPDIILMDLGLPDMDGVDV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ I+ + D+ L+KPF + +L+ + L
Sbjct: 69 IKKIR-TWSVAPIIVISARSDDKDKVDALDAGADDYLTKPFSVEELLARLRSTLRR 123
>gi|209549644|ref|YP_002281561.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209535400|gb|ACI55335.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 246
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G + +G + L++ D++MP DG+
Sbjct: 6 HILVVDDDREIRELVSGYLQKNGLRTSTAADGRQMRSFLEANAVDLIVLDVMMPGDDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T L+KPF R+L+ + +L
Sbjct: 66 LCRELRAGRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAARELLARIKAVLRR 123
>gi|192292822|ref|YP_001993427.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
TIE-1]
gi|192286571|gb|ACF02952.1| PAS/PAC sensor hybrid histidine kinase [Rhodopseudomonas palustris
TIE-1]
Length = 1415
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLA+D+ DMR ++ + LG A YEV + +G +A + V++ L+L+D++MP +DG+
Sbjct: 644 HILLADDNHDMRDYVARLLGDA-YEVEAVGDGVAALEAVKKRRPDLVLSDVMMPRLDGLG 702
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L + DL V+F++ A + LSKPF R+L+ V L
Sbjct: 703 LLKALRSDPAVADLPVIFLSARAGEEAKLEGLEAGADDYLSKPFSARELLTRVRANL 759
Score = 103 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDGI 62
IL+ ED+ ++ F + L GY+ V ++G A + + F L+L+D+ MP MDG+
Sbjct: 1300 ILVVEDNAEVGEFSTQLLHDLGYQTVLASSGEQALALLGDNAKRFDLVLSDVAMPGMDGV 1359
Query: 63 ELARRATELDPDLKVMFITGFA-AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L R + P+L V+ +G+A +A L KP+ + DL + + +
Sbjct: 1360 TLGREIKKRLPELPVVLNSGYAHMLADEDHGFEL-----LHKPYSVEDLSKVLRKAM 1411
>gi|153937923|ref|YP_001390256.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|152933819|gb|ABS39317.1| DNA-binding response regulator [Clostridium botulinum F str.
Langeland]
gi|295318352|gb|ADF98729.1| DNA-binding response regulator [Clostridium botulinum F str.
230613]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG
Sbjct: 3 RVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|108761373|ref|YP_630825.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
gi|108465253|gb|ABF90438.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
Length = 970
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +I++ EDD ++R FL + L + Y V+ NG + E L+L+D++MP M G
Sbjct: 597 SPRIMVVEDDPEIRSFLARLLAQH-YRVMEAINGDDGRQRALRERPDLILSDVMMPVMSG 655
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+++ D+ V+ +T V + L KPF +L+ + L
Sbjct: 656 LQMLTALRNDPQTVDIPVILLTARQEVTAKVEGLGTGANDYLGKPFSPNELLARIETQLR 715
Query: 120 IK 121
++
Sbjct: 716 LR 717
>gi|21241531|ref|NP_641113.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|21106880|gb|AAM35649.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 238
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ G + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 126
>gi|15643234|ref|NP_228278.1| response regulator [Thermotoga maritima MSB8]
gi|251836870|pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis-Autophosphorylation Mechanism
gi|251836872|pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis-Autophosphorylation Mechanism
gi|251836873|pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis-Autophosphorylation Mechanism
gi|4980976|gb|AAD35552.1|AE001724_10 response regulator [Thermotoga maritima MSB8]
Length = 122
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+LL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLDIMMPVMD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+ +T + + KV+ KPF + EV LL
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|91976474|ref|YP_569133.1| winged helix family two component transcriptional regulator
[Rhodopseudomonas palustris BisB5]
gi|91682930|gb|ABE39232.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB5]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|116750190|ref|YP_846877.1| two component sigma54 specific Fis family transcriptional regulator
[Syntrophobacter fumaroxidans MPOB]
gi|116699254|gb|ABK18442.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Syntrophobacter fumaroxidans MPOB]
Length = 466
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALG-KAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +L+ +D++D+ + L ++L G EV ++G A + + EP LLL D+ MPE
Sbjct: 1 MTKETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G+EL + P L V+ +T + L + ++KPF LV +N+ L
Sbjct: 61 MNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKAL 120
Query: 119 TI 120
Sbjct: 121 ER 122
>gi|310756717|gb|ADP20499.1| AdeR [Acinetobacter baumannii]
Length = 247
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGNIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|225387739|ref|ZP_03757503.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
DSM 15981]
gi|225046157|gb|EEG56403.1| hypothetical protein CLOSTASPAR_01509 [Clostridium asparagiforme
DSM 15981]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ D+ L L K GY +G A R E +L D+++P++ GI
Sbjct: 2 KKILIVDDERDIVECLDMNLRKKGYATAFAYDGTEAVLTARRERPDCILLDVMLPKISGI 61
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + V+ +T ++KPF R+L + L
Sbjct: 62 EVCHLLKADQATGHIPVIMLTAKGEEDDKVTGFDAGADDYITKPFGWRELFARIEVALRR 121
>gi|210612997|ref|ZP_03289562.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
gi|210151360|gb|EEA82368.1| hypothetical protein CLONEX_01764 [Clostridium nexile DSM 1787]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ EDD D++ L L + GYE+ ++G A F L+L DI++P++DG
Sbjct: 2 QHILIVEDDLDIQDLLRNFLQEVGYEITIASDGMEAIALFSSAHFDLILLDIMLPKIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ +T + ++KPF + LV ++ +L +
Sbjct: 62 TVCELIRKQ-SQVPIIMLTALNGEEEQIRGLDLQVDDYITKPFSMPILVRKIGAVLRRSS 120
>gi|108807081|ref|YP_650997.1| helix-turn-helix, Fis-type [Yersinia pestis Antiqua]
gi|108812984|ref|YP_648751.1| helix-turn-helix, Fis-type [Yersinia pestis Nepal516]
gi|108776632|gb|ABG19151.1| Helix-turn-helix, Fis-type [Yersinia pestis Nepal516]
gi|108778994|gb|ABG13052.1| Helix-turn-helix, Fis-type [Yersinia pestis Antiqua]
Length = 463
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ +DD + + GY+ +NG A + +E PF L+LTD+ M EMDG
Sbjct: 14 KAHILVVDDDLSHCTIIQALMKGWGYQTTPAHNGLEAIELAKEIPFDLILTDVRMSEMDG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
IE + +P + ++ +T ++ V ++ L+KP L + R L
Sbjct: 74 IEALKAIKAYNPAIPILIMTAYSNVESAVEAIKAGAYDYLTKPLDFDMLQLTLERALEHT 133
Query: 122 N 122
+
Sbjct: 134 H 134
>gi|78484350|ref|YP_390275.1| two component transcriptional regulator [Thiomicrospira crunogena
XCL-2]
gi|78362636|gb|ABB40601.1| two component transcriptional regulator, winged helix family
[Thiomicrospira crunogena XCL-2]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL ED+ + L K L + Y V S +G A + E + L++ D+ +P+
Sbjct: 1 MS-KILLVEDEALLVENLKKNLSQQQYIVDSALDGEEALYLLNEFEYDLIILDLGLPKKS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + V+ +T + L KPFH +L+ + LL
Sbjct: 60 GLQVLEQIRADQNTTPVLILTARNTWQERVEGLKKGADDYLGKPFHFEELLARIEVLLKR 119
>gi|729183|sp|Q02540|COPR_PSESM RecName: Full=Transcriptional activator protein CopR
gi|151181|gb|AAA25803.1| transcriptional activator [Pseudomonas syringae]
Length = 227
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ +L + L +AG+ V G A D+ E + LL+ D++MP +DG E
Sbjct: 2 KLLVAEDEPKTGIYLQQGLREAGFNVDRVVTGTDAVDQALNEAYDLLILDVMMPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+F+T V L KPF L +L+ V LL
Sbjct: 62 VIRRLRTAGQPVPVLFLTARDGVDDRVKGLELGADDYLVKPFALSELLARVRTLLRR 118
>gi|154244586|ref|YP_001415544.1| two component transcriptional regulator [Xanthobacter autotrophicus
Py2]
gi|154158671|gb|ABS65887.1| two component transcriptional regulator, winged helix family
[Xanthobacter autotrophicus Py2]
Length = 255
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +D++ +R + + L G+ V S +G + EP L+L D+ MP DG+
Sbjct: 13 RIIVVDDEEALRETVAEYLAGQGFRVRSAASGRDLDTLLAAEPADLILMDVHMPGEDGLT 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LARR ++ +T + + KPF LR+L + +L
Sbjct: 73 LARRIRSA-AATPIIMLTAADDIVDRVAGLEVGADDYVVKPFDLRELKARIRAVLRR 128
>gi|148549046|ref|YP_001269148.1| histidine kinase [Pseudomonas putida F1]
gi|148513104|gb|ABQ79964.1| histidine kinase [Pseudomonas putida F1]
Length = 785
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V GA A + + E F L+L D MP MDG E
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLAREEFDLVLMDCNMPVMDGYE 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ V+
Sbjct: 725 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALVDHW 780
>gi|119774853|ref|YP_927593.1| response regulator receiver protein [Shewanella amazonensis SB2B]
gi|119767353|gb|ABL99923.1| two component transcriptional regulator, winged helix family
[Shewanella amazonensis SB2B]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL EDD+ R L +AL + G V +G A + ++ L+L D++MP MD
Sbjct: 1 MN-KILLVEDDNGFRELLTEALEREGLCVSVATDGFEALTLMEKDTPELILLDLMMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + L V+ I+ + L+KPF +++L+ + L
Sbjct: 60 GFSM---LMQRRNQLPVIVISALDSEEERIRGYQLGADDFLTKPFSIKELIVRIQALARR 116
>gi|300787588|ref|YP_003767879.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299797102|gb|ADJ47477.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 228
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L AL ++V++ G D + ++L D+++P +DG+
Sbjct: 6 RVLLVEDDAMISEALSLALTDEDFDVLAAATGEDGLDLLESTSVDVVLLDLMLPGIDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E DL ++ IT ++KP +L + LL
Sbjct: 66 VCRRVREHG-DLPIIVITARTDTHDVIAGLEAGADDYVTKPLVAGELAARIRALLRR 121
>gi|299535145|ref|ZP_07048470.1| two component transcriptional regulator, winged helix family
protein [Lysinibacillus fusiformis ZC1]
gi|298729462|gb|EFI70012.1| two component transcriptional regulator, winged helix family
protein [Lysinibacillus fusiformis ZC1]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ R + L GY+V NG A D +R+ L++ DI+MP+MD
Sbjct: 1 MN--ILICDDDKEIVRAISIYLENEGYQVFKAYNGIEAIDLIRDHVIHLIIMDIMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + D + ++ ++ + ++KPF+ +LV V L
Sbjct: 59 GITATMKIRQ-DNMIPLIMLSAKSEDYDKILGLNIGADDYMAKPFNPLELVARVKSQLRR 117
>gi|256370488|ref|YP_003107999.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
4915]
gi|256000651|gb|ACU49050.1| DNA-binding response regulator BvrR, putative [Brucella microti CCM
4915]
Length = 239
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|168184125|ref|ZP_02618789.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|237794198|ref|YP_002861750.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
gi|182672851|gb|EDT84812.1| DNA-binding response regulator [Clostridium botulinum Bf]
gi|229261611|gb|ACQ52644.1| DNA-binding response regulator [Clostridium botulinum Ba4 str. 657]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDILYKEYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|85373907|ref|YP_457969.1| phosphate regulon response regulator [Erythrobacter litoralis
HTCC2594]
gi|84786990|gb|ABC63172.1| phosphate regulon response regulator [Erythrobacter litoralis
HTCC2594]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+LL EDD + L GY V + ++G A E+ L++ D ++ G
Sbjct: 3 KAKLLLVEDDPALAELLEYRFTNEGYGVRTTSDGDEALLMASEDVPDLVILDWMIEGTSG 62
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ RR + + ++ +T A + KPF R+L+ V ++
Sbjct: 63 IEVCRRLRREKETAHVPIIMLTAREAEDDRVRGLDTGADDYMVKPFSPRELLARVAAVMR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|83311012|ref|YP_421276.1| response regulator [Magnetospirillum magneticum AMB-1]
gi|82945853|dbj|BAE50717.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Magnetospirillum
magneticum AMB-1]
Length = 228
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D+ +R+FL +L GYEV +GA+ R LL+ D+ +P+MD
Sbjct: 1 MS-RILVVDDEPQIRKFLRISLAANGYEVAEAESGAAGLQAFRAACPDLLILDLGLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ + D D+ ++ ++ A ++ ++KPF + +L+ V +L
Sbjct: 60 GQEIISAVRQ-DCDIPIIVLSVRAQELDKVEALDRGANDYVTKPFGVAELMARVRAVLR 117
>gi|114319830|ref|YP_741513.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226224|gb|ABI56023.1| response regulator receiver protein [Alkalilimnicola ehrlichii
MLHE-1]
Length = 123
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ +D+ ++ L + +AGYEV + +G A + + L+L D++MP +
Sbjct: 1 MPKRILIVDDEANIVLSLEFLMKQAGYEVETATDGDEALEAIERAKPDLVLLDVMMPRKN 60
Query: 61 GIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ D D+ V+ +T + ++KPF ++++++V LL
Sbjct: 61 GYEVCETIRASDDWKDILVVMLTAKGRDVEREKGLSLGADDYITKPFSTQEVIDKVRELL 120
>gi|296272695|ref|YP_003655326.1| response regulator receiver modulated diguanylate cyclase
[Arcobacter nitrofigilis DSM 7299]
gi|296096869|gb|ADG92819.1| response regulator receiver modulated diguanylate cyclase
[Arcobacter nitrofigilis DSM 7299]
Length = 290
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D + + L++ LG Y+++ G SA + E L+L DI+MP MDG
Sbjct: 2 ETILVVDDTNINIKILVELLGDK-YDIIVAIGGESAINIASSEQPDLILLDIMMPVMDGF 60
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + D+ ++F+T + + + KPF ++L+ V L I
Sbjct: 61 EVCRRLKQNPKTNDIPIIFLTAKTDEDSIERAYEMGGSDYILKPFKPKELMARVKTHLKI 120
Query: 121 KN 122
+N
Sbjct: 121 QN 122
>gi|289671038|ref|ZP_06492113.1| two-component system response regulator [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 264
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ + + L++ DI +P+ DG E
Sbjct: 38 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGHE 97
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + + V+ +T A + ++KPF +++L+ + LL
Sbjct: 98 VLREIRQ-WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 152
>gi|241896109|ref|ZP_04783405.1| response regulator [Weissella paramesenteroides ATCC 33313]
gi|241870623|gb|EER74374.1| response regulator [Weissella paramesenteroides ATCC 33313]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++++ RF+ L GYE +NG S D F L+L D+++PE+ G+E+
Sbjct: 4 VLVIEDEENLARFVELELQHEGYETHVEDNGRSGLDAALANDFDLILLDLMLPELSGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
ARR E + ++ +T +V + KPF + +L+ V LL
Sbjct: 64 ARRLREE-KNTPIIMMTARDSVIDRVSGLDYGADDYVVKPFAIEELLARVRALLRR 118
>gi|227510515|ref|ZP_03940564.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227513524|ref|ZP_03943573.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227083397|gb|EEI18709.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227190167|gb|EEI70234.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 228
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L GY+ NG + +E F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E + ++ +T +V + KPF + +L+ + LL
Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118
>gi|162147059|ref|YP_001601520.1| transcriptional regulatory protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785636|emb|CAP55207.1| Transcriptional regulatory protein [Gluconacetobacter
diazotrophicus PAl 5]
Length = 253
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
I L +DD ++ + L G+ V + +G SA + P L + DI MP MDG
Sbjct: 22 KHTIALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALHGLMTRPVDLAVLDIKMPRMDG 81
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL +R L V+F++ ++KPF R L+ + LL
Sbjct: 82 MELLQRLR-TRSHLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRR 139
>gi|153008164|ref|YP_001369379.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|239833135|ref|ZP_04681464.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
LMG 3301]
gi|151560052|gb|ABS13550.1| two component transcriptional regulator, winged helix family
[Ochrobactrum anthropi ATCC 49188]
gi|239825402|gb|EEQ96970.1| Transcriptional regulatory protein chvI [Ochrobactrum intermedium
LMG 3301]
Length = 239
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|170722192|ref|YP_001749880.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169760195|gb|ACA73511.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 220
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L + GY + +G S ++ E F L++ D+ +P + GIE
Sbjct: 2 RLLLVEDDTALGEGICDGLRQEGYTLDWLRDGLSGLHALQHEMFDLVILDLGLPRLGGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR L V+ +T A L KPF L +L + LL
Sbjct: 62 LLRRLRAGGDSLPVLILTARDATEDRITGLDAGADDYLVKPFDLNELKARLRALLRR 118
>gi|88859132|ref|ZP_01133773.1| putative two-component response regulator [Pseudoalteromonas
tunicata D2]
gi|88819358|gb|EAR29172.1| putative two-component response regulator [Pseudoalteromonas
tunicata D2]
Length = 312
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD L + L K Y V+S +NG A D V L+L DI MP+MDG ++
Sbjct: 19 ILVVDDDPLNLVVLKQTLQKY-YRVLSASNGQEALDVVSSNTIDLILLDIKMPKMDGYQV 77
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + V+FI+ + A ++KPF ++ V LTIK
Sbjct: 78 LKKLKNSPQTQSIPVIFISANDSHADEAKGLEMGAMDYITKPFSPPIVLVRVKNQLTIK 136
>gi|127513134|ref|YP_001094331.1| two component transcriptional regulator [Shewanella loihica PV-4]
gi|126638429|gb|ABO24072.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 246
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ + L GY+ +NGA A +++ E L++ D+++P+MDG+ +
Sbjct: 7 ILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPDMDGLSI 66
Query: 65 ARRATELDPDL------KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R P + ++ +T L+KP R L+ V LL
Sbjct: 67 CRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLARVRALL 126
Query: 119 TIK 121
K
Sbjct: 127 RRK 129
>gi|332292664|ref|YP_004431273.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Krokinobacter diaphorus 4H-3-7-5]
gi|332170750|gb|AEE20005.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Krokinobacter diaphorus 4H-3-7-5]
Length = 387
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ ED+ +RR L K L + Y+V +G +K+REE + L+L DI MP+MDG
Sbjct: 3 KILIIEDEAAIRRVLTKILSEESKDYQVEEAADGLEGINKIREEDYDLVLCDIKMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ A +L P+ ++ I+G + ++ +SKP L L+N V L K
Sbjct: 63 VEVLEAARKLKPETPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNALDRK 122
>gi|150009686|ref|YP_001304429.1| two-component system sensor histidine kinase/response regulator
[Parabacteroides distasonis ATCC 8503]
gi|149938110|gb|ABR44807.1| two-component system sensor histidine kinase/response regulator,
hybrid [Parabacteroides distasonis ATCC 8503]
Length = 1369
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D R F+ +L Y V++ +G A+ + EE ++++D++MP DGI
Sbjct: 1122 TLLVVDDNTDFREFMKLSLSGV-YSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGIT 1180
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + V+ +T +A +SKPF++ L+ +V L+ +K
Sbjct: 1181 LCRRIKGDIRTSHVPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMK 1240
>gi|167033182|ref|YP_001668413.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166859670|gb|ABY98077.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 238
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R L L + GY+V + A + + L+L DI +P D
Sbjct: 1 MTPRVLIVDDDPLIRDLLQAYLSQEGYDVHCADTAEKAEALLGSQDVDLVLLDIRLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ ITG + KP + R+LV+ L+
Sbjct: 61 GLTLTRELR-VRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRR 119
>gi|104781783|ref|YP_608281.1| response regulator [Pseudomonas entomophila L48]
gi|95110770|emb|CAK15483.1| putative response regulator [Pseudomonas entomophila L48]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD D L L K G+EV +GA R+ ++L D+++P++ G
Sbjct: 4 KRVLIVEDDADGASILEAYLRKDGFEVAVAEDGARGLALFRQWSPQIVLLDMMLPKLSGP 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + V+ +T + + KP + R++V V+ +L
Sbjct: 64 ELLSEIRRNH-NTPVIMVTAIGDEPDKIGALRYGADDYVVKPCNPREVVARVHAVLRR 120
>gi|85060158|ref|YP_455860.1| DNA-binding transcriptional regulator CpxR [Sodalis glossinidius
str. 'morsitans']
gi|84780678|dbj|BAE75455.1| two-component response regulator [Sodalis glossinidius str.
'morsitans']
Length = 232
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ V ++G A + + LLL D++MP +
Sbjct: 1 MN-KILLVDDDRELTSLLKELLEMEGFNVQVAHDGEQALSQ-LDSSIDLLLLDVMMPRKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKELRQQQ-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
+
Sbjct: 118 SH 119
>gi|320158374|ref|YP_004190752.1| response regulator [Vibrio vulnificus MO6-24/O]
gi|319933686|gb|ADV88549.1| response regulator [Vibrio vulnificus MO6-24/O]
Length = 378
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + R L L Y V+ NG A + ++L DI+MPEMDG E
Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++F+T + + + KP L++ V L +K
Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKLK 125
Query: 122 N 122
+
Sbjct: 126 H 126
>gi|313498314|gb|ADR59680.1| Winged helix family two component transcriptional regulator
[Pseudomonas putida BIRD-1]
Length = 238
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R L L + GY+V + A + + L+L DI +P D
Sbjct: 1 MTPRVLIVDDDPLIRDLLQAYLSREGYDVHCADTAERAEALLASQDVDLVLLDIRLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +TG + KP + R+LV+ L+
Sbjct: 61 GLTLTRELR-VRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRR 119
>gi|251790803|ref|YP_003005524.1| winged helix family two component transcriptional regulator
[Dickeya zeae Ech1591]
gi|247539424|gb|ACT08045.1| two component transcriptional regulator, winged helix family
[Dickeya zeae Ech1591]
Length = 231
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++IL+ EDD D L L + ++V+ +G S + +L+L D+++P M
Sbjct: 1 MSPKRILIIEDDADAASVLEAYLKRDNFQVLLARDGVSGLEMALRAKPALILLDVMLPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ D+ V+ +T + ++KP+H ++V V +L
Sbjct: 61 NGTEVLAALRRK-SDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|209528218|ref|ZP_03276685.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
gi|209491340|gb|EDZ91728.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
Length = 372
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D + + L GY V +G SA + E+P L+L D++MP +DG E+
Sbjct: 15 ILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYEV 74
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR P + ++ IT + + + KP + +L+ V LL +K+
Sbjct: 75 TRRIRNNPNLPFIPILLITAH-DQSSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLKH 133
>gi|254412965|ref|ZP_05026737.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196180129|gb|EDX75121.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 216
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+++LL +DD ++ + L GY+V++ NG A D + ++ +++ D++MPEMDG
Sbjct: 9 NKRLLLIDDDPNLILLVKDYLEFRGYDVITAENGREALDVLAQDIPDMIICDVMMPEMDG 68
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L + + V+F++ + KPF +LV +V L
Sbjct: 69 YALVEYVRQDPSMNWVPVLFLSAKGQSNDRVKGLNTGADVYMVKPFEPEELVAQVESSLR 128
>gi|86610149|ref|YP_478911.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558691|gb|ABD03648.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L AL K G+ V G A + E+ + LL+ D ++P GI+
Sbjct: 2 RILLVEDDPEQLELLQAALSKCGHVVDCAKEGEMAAWLMEEKAYDLLILDWMLPGPSGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ + V+ +T A + L KP L +L+ V L ++
Sbjct: 62 LCRQYRQSGGCAPVLMLTAKDATSDVVQGLDAGADDYLVKPVDLVELLARVRA-LGRRS 119
>gi|315225247|ref|ZP_07867064.1| two component system sensor histidine kinase regulator
[Capnocytophaga ochracea F0287]
gi|314944930|gb|EFS96962.1| two component system sensor histidine kinase regulator
[Capnocytophaga ochracea F0287]
Length = 1348
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+DDMR ++ L + V+ +G + L+++DI+MP+ DGI
Sbjct: 1095 ETILVVEDNDDMRDYIQHIL-NEHFHVLLARDGEEGLELAITHIPDLIVSDIMMPKRDGI 1153
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLT 119
+ + E + ++ +T + + + ++KPF + L + LL+
Sbjct: 1154 SMVKELRANEKTNHIPIILLTALDKESQVVEGYSLGVEDYITKPFSAKILSKRIENILLS 1213
Query: 120 IK 121
K
Sbjct: 1214 RK 1215
>gi|315039139|ref|YP_004032707.1| two-component response regulator [Lactobacillus amylovorus GRL
1112]
gi|325957610|ref|YP_004293022.1| two-component response regulator [Lactobacillus acidophilus 30SC]
gi|312277272|gb|ADQ59912.1| two-component response regulator [Lactobacillus amylovorus GRL
1112]
gi|325334175|gb|ADZ08083.1| two-component response regulator [Lactobacillus acidophilus 30SC]
gi|327184255|gb|AEA32702.1| two-component response regulator [Lactobacillus amylovorus GRL
1118]
Length = 228
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ D++MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|297203139|ref|ZP_06920536.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|297148318|gb|EFH28940.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 262
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + G+E V+ N+G A + E +++ D+++P++DG
Sbjct: 38 RLLVVDDDPPIADLVATVARYEGWEAVTANSGEEALSRAAEFRPDIVVLDLMLPDLDGFG 97
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+F+T AVA L KPF + +L+ + +L
Sbjct: 98 VLDRLRRSGTMVPVVFLTARDAVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRR 154
>gi|258645697|ref|ZP_05733166.1| transcriptional regulatory protein CutR [Dialister invisus DSM
15470]
gi|260403067|gb|EEW96614.1| transcriptional regulatory protein CutR [Dialister invisus DSM
15470]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ M L L GYEV + +G +A +K RE +S ++ DI+MP++DGIE
Sbjct: 2 KILIAEDEKAMSDALAAVLKHFGYEVDAVYDGLAATEKARENSYSCMIFDIMMPKIDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + V+ +T + V L+KPF + +L+ + +
Sbjct: 62 ALKRIRDSGDMTPVIMLTAKSEVEDRIMGLDAGADDYLAKPFAMGELLARIRSMTRR 118
>gi|257875469|ref|ZP_05655122.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
gi|257809635|gb|EEV38455.1| vancomycin response regulator [Enterococcus casseliflavus EC20]
Length = 225
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ ++ + L + V++C + A ++ + FSL + D+++P++ G
Sbjct: 2 EKILLVEDEKEISDLIAFYLRNENFSVITCADANEAQVQIEQNSFSLAILDVMLPDITGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + + ++ +T + ++KPF +++ V +
Sbjct: 62 DLCKIIRKKH-HYPIIMLTAKSEEIDKITGLTIGADDYITKPFRPLEVIARVKAQIRR 118
>gi|257486804|ref|ZP_05640845.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330988679|gb|EGH86782.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010275|gb|EGH90331.1| DNA-binding response regulator CpxR [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 229
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD ++ L + L + + V N+ ++ +++ DI+MP M
Sbjct: 1 MT-RVLLVDDDRELTEMLSQYLTRESFTVTCTNSAEEGENEALSGRHDIVVLDIMMPRMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + V+ +T + KP +LV + ++
Sbjct: 60 GIEVLRRIRAQ-SQVPVILLTARGDNIDRISGLELGADDYVPKPSSPGELVARLRAIMRR 118
>gi|167590140|ref|ZP_02382528.1| two component heavy metal response transcriptional regulator,
winged helix family protein [Burkholderia ubonensis Bu]
Length = 227
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AGY V +G + + E + LL+ D+++P DG
Sbjct: 2 RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGLHQAETEDYDLLVLDVMLPGQDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+F+T V L+KPF +L + +L
Sbjct: 62 LLQNLRRSKS-TPVLFLTAMDDVGDRVKGLELGADDYLAKPFDFVELTARIKSVLRR 117
>gi|150004693|ref|YP_001299437.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|160892059|ref|ZP_02073062.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
gi|149933117|gb|ABR39815.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|156858537|gb|EDO51968.1| hypothetical protein BACUNI_04519 [Bacteroides uniformis ATCC 8492]
Length = 1356
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ D+R ++ L Y ++ ++G + +++++DI+MP M+GI L
Sbjct: 1097 LVVEDNRDIREYIANELQDT-YRILQADDGKEGLALALKYTPNIIVSDIMMPNMNGIALC 1155
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ +T ++ + L+KPF + L + +N LL I+
Sbjct: 1156 KAIKSDMNTSHIPVILLTAKDSIQDKEEGYNSGADSYLTKPFSAKLLRSRINNLLEIQ 1213
>gi|194365942|ref|YP_002028552.1| two component heavy metal response transcriptional regulator,
winged helix family [Stenotrophomonas maltophilia
R551-3]
gi|194348746|gb|ACF51869.1| two component heavy metal response transcriptional regulator,
winged helix family [Stenotrophomonas maltophilia
R551-3]
Length = 232
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L + L +AGY V +NG + L++ D+++P +DG
Sbjct: 2 KLLIVEDEPKTGNYLRQGLIEAGYVVDLASNGIDGLHLAESGEYQLVILDVMLPGLDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R L V+F+T +++A L+KPF +L+ V LL
Sbjct: 62 VLSRLRGAGWPLPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRR 118
>gi|91781372|ref|YP_556579.1| two component heavy metal response transcriptional regulator
[Burkholderia xenovorans LB400]
gi|91694032|gb|ABE37229.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia xenovorans LB400]
Length = 224
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L+ L +AGY V NG E + L+L D++MPEMDG
Sbjct: 2 RILVIEDEAKTGEYLLNGLTEAGYVVDVAANGIDGLHLANEMRYDLILLDVMMPEMDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ D V+F++ + L KPF +L+ + +L
Sbjct: 62 VMKKLGARL-DTPVLFLSARGTLEDRLKGLDLGADDYLVKPFSFAELLARIRIILRR 117
>gi|71906069|ref|YP_283656.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Dechloromonas aromatica RCB]
gi|71845690|gb|AAZ45186.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Dechloromonas aromatica RCB]
Length = 223
Score = 140 bits (355), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L + GY V NG A + + LL+ D+ +P++ G+E
Sbjct: 2 RILIAEDDAIIADGLSRSLRQGGYAVDWAPNGMEADTALVTVSYDLLILDLGLPKLSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +R + L V+ +T + KPF L +L V LT ++
Sbjct: 62 VLKRLRARNSQLPVLILTALDGTGDRVKGLDLGADDYMVKPFELPELEARVRA-LTRRS 119
>gi|325289762|ref|YP_004265943.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
gi|324965163|gb|ADY55942.1| two component transcriptional regulator, winged helix family
[Syntrophobotulus glycolicus DSM 8271]
Length = 227
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +D+ ++ +FL L G++V++ +G SA V++ + + D++MP MDG E
Sbjct: 8 KVLLIDDEPNILQFLEMGLLNEGFDVMTAQDGMSAMTIVKQFQPHIAILDVMMPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + + ++ +T V ++KPF +L+ ++ ++N
Sbjct: 68 VCKMLKKTE-NTAIIMLTAKDEVDDKVKGLTLGADDYMAKPFSFEELLARIHA--RVRN 123
>gi|312959933|ref|ZP_07774448.1| putative two component response regulator transcription regulator
protein [Pseudomonas fluorescens WH6]
gi|311285880|gb|EFQ64446.1| putative two component response regulator transcription regulator
protein [Pseudomonas fluorescens WH6]
Length = 263
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ ++ L L +AG+ +G A + + L+L D++MP++DG +
Sbjct: 36 VLIAEDEPEIADILTAYLKRAGFRTAHAQDGRRALELHQLLKPDLVLLDVMMPKLDGWMV 95
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T + KPF+ +++ + +L
Sbjct: 96 LAELRHRG-NTAVIMLTAHDQDMDKLMGLRIGADDYIVKPFNPAEVIARIQAVLRR 150
>gi|317499180|ref|ZP_07957456.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
gi|291560744|emb|CBL39544.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SSC/2]
gi|316893539|gb|EFV15745.1| response regulator receiver domain-containing protein
[Lachnospiraceae bacterium 5_1_63FAA]
Length = 235
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ KIL+ +DD ++ + K L YE+++ +G A D + E+ LL+ D++MP+M
Sbjct: 1 MNQPKILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + E ++ ++ ++ + + +SKPF +LV V L
Sbjct: 61 DGLSATMKIRE-SKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|290352153|dbj|BAI78787.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRS 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|255691123|ref|ZP_05414798.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
gi|260623476|gb|EEX46347.1| two-component system sensor histidine kinase/response regulator
[Bacteroides finegoldii DSM 17565]
Length = 1523
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL ED+ ++R FL Y VV +G + K + ++++D++MPE DGIE+
Sbjct: 1240 LLVEDNQELRVFLRSIFASN-YRVVEAADGMEGWSKALKYVPDIIISDVMMPEKDGIEMT 1298
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + ++ +T + + ++KPF L V LL+ +
Sbjct: 1299 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLLSQR 1356
>gi|148560182|ref|YP_001259941.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
ovis ATCC 25840]
gi|148371439|gb|ABQ61418.1| phosphate regulon transcriptional regulatory protein PhoB [Brucella
ovis ATCC 25840]
Length = 228
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 4/126 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I + ED++ + L L GY+V + G A +RE LL+ D ++P
Sbjct: 1 MSQVPRIAVVEDEEALSVLLRYNLEAEGYQVDTMLRGDEAEIALRESVPDLLILDWMLPG 60
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ GIEL RR + L ++ +T + + + KPF +L+ V
Sbjct: 61 VSGIELCRRLRQRPETGRLPIIMLTARGEESERVRGLSVGADDYVVKPFSTPELLARVKA 120
Query: 117 LLTIKN 122
+L N
Sbjct: 121 MLRRAN 126
>gi|118466262|ref|YP_880424.1| TrcR family transcriptional regulator [Mycobacterium avium 104]
gi|118167549|gb|ABK68446.1| two component transcriptional regulator trcr [Mycobacterium avium
104]
Length = 254
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+ V +NG A K +L+ DI++P++DG+
Sbjct: 30 RVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGLR 89
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D +F+T +V ++KPF L +LV + LL
Sbjct: 90 ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 146
>gi|116252485|ref|YP_768323.1| two-component response regulator transcriptional regulatory protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|115257133|emb|CAK08228.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 246
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ IL+ +DD ++R + L K G +G V L++ D++MP
Sbjct: 1 MDHVDHILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFVEANAVDLIVLDVMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + ++ +T L KPF R+L+ + +
Sbjct: 61 DDGLVLCRELRAGRHKAIPILMLTARTDEMDRILGLEMGADDYLPKPFAARELLARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|119944738|ref|YP_942418.1| sensor histidine kinase [Psychromonas ingrahamii 37]
gi|119863342|gb|ABM02819.1| sensor histidine kinase with ATPase domain, two fused [Psychromonas
ingrahamii 37]
Length = 1574
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 12/128 (9%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ R+ + L AG V + NG A + V+ F +L D+ MPE+DG E
Sbjct: 1222 KILLVDDNEINRQVAREFLENAGLLVTTATNGREAVNSVKSHVFDAVLMDVQMPEIDGYE 1281
Query: 64 LARRATELD------------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
++ + P L ++ +T A A ++KP R L
Sbjct: 1282 ATQKIRRWEKTRVDLQPTDGSPVLPIIAMTAHAMEGDKERCLAAGMNDYVTKPIDTRQLF 1341
Query: 112 NEVNRLLT 119
++R +
Sbjct: 1342 EALSRWIK 1349
Score = 88.3 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 7/116 (6%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR----EEPFSLLLTDIVMPEMDG 61
L+ +D+ + + K L + V + +G A + L + D M +DG
Sbjct: 1075 LVVDDNPVTLKVIEKMLIHLKFNVTTTESGEKALSVLENALGNNTVDLAIIDWQMGGIDG 1134
Query: 62 IELARRATELD--PDLKVMFITGFAAVA-LNPDSNAPKNAKVLSKPFHLRDLVNEV 114
IE A++ E P + ++ ++G L S + KP + LV +
Sbjct: 1135 IETAKKIKENPSIPKMPMVLMSGSDRDGLLGQKSKQVGFDSFVLKPVNRSILVETI 1190
>gi|71734983|ref|YP_275297.1| DNA-binding response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257485460|ref|ZP_05639501.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|71555536|gb|AAZ34747.1| DNA-binding response regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320323806|gb|EFW79890.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
str. B076]
gi|320327945|gb|EFW83950.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330881161|gb|EGH15310.1| DNA-binding response regulator [Pseudomonas syringae pv. glycinea
str. race 4]
gi|330889640|gb|EGH22301.1| DNA-binding response regulator [Pseudomonas syringae pv. mori str.
301020]
gi|330989766|gb|EGH87869.1| DNA-binding response regulator [Pseudomonas syringae pv. lachrymans
str. M301315]
gi|331010708|gb|EGH90764.1| DNA-binding response regulator [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 222
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRGKGLATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|17229799|ref|NP_486347.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17131399|dbj|BAB74006.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 470
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L G+EV NG A + ++L D+ MP+MDG ++
Sbjct: 13 ILVVDDTPDNLRLLSAMLTARGFEVRKALNGKMALTACQMLLPDVILLDVSMPDMDGYQV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E D+ V+FI+ V + ++KPFH +++ + + ++
Sbjct: 73 CQQLKADEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQINLR 131
>gi|194336760|ref|YP_002018554.1| two component transcriptional regulator, winged helix family
[Pelodictyon phaeoclathratiforme BU-1]
gi|194309237|gb|ACF43937.1| two component transcriptional regulator, winged helix family
[Pelodictyon phaeoclathratiforme BU-1]
Length = 236
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + L L +AGY+ A +++ + F L+L D+++P MDG EL
Sbjct: 6 ILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R +L DL ++ +T + KPF R+L + +L
Sbjct: 66 CRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKR 123
>gi|331701554|ref|YP_004398513.1| winged helix family two component transcriptional regulator
[Lactobacillus buchneri NRRL B-30929]
gi|329128897|gb|AEB73450.1| two component transcriptional regulator, winged helix family
[Lactobacillus buchneri NRRL B-30929]
Length = 228
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L GY+ NG + +E F ++L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLARFVELELKHEGYDTQVELNGRTGLQAALDENFDVILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ARR E + ++ +T +V + KPF + +L+ + LL
Sbjct: 60 GMEVARRLREK-KNTPIIMMTARDSVIDRVSGFDHGADDYIVKPFAIEELLARIRALLRR 118
>gi|319640208|ref|ZP_07994934.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317388195|gb|EFV69048.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1403
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1150 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1208
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1209 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1268
>gi|300783817|ref|YP_003764108.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299793331|gb|ADJ43706.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 232
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + R L L GY+V++ ++G +A V E +++ D+ +P++DG E
Sbjct: 7 TVLVVDDEPQIVRALRINLTARGYKVITAHDGTAALKAVAETKPDVVVLDLGLPDLDGTE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ A ++ ++KPF + +L+ + +
Sbjct: 67 VIAGLRG-WTTVPIIVLSARGDSADKVEALDAGADDYVTKPFGMDELLARLRAAVRR 122
>gi|261366093|ref|ZP_05978976.1| transcriptional activator protein Irlr [Subdoligranulum variabile
DSM 15176]
gi|282572094|gb|EFB77629.1| transcriptional activator protein Irlr [Subdoligranulum variabile
DSM 15176]
Length = 224
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED +M L+K L A Y V SC G A D + + ++ DI++P +DG+E
Sbjct: 2 RILVVEDQPEMNALLVKQLKAAQYSVDSCLTGTDALDYLAGGEYDAVILDIMLPGVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR V+ +T + L KPF L++L+ + L+ +
Sbjct: 62 VLRRRRAAGDKTPVLLLTARDGIDDRVRGLDSGADDYLVKPFALQELLARLRVLIRRR 119
>gi|240144354|ref|ZP_04742955.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
gi|257203603|gb|EEV01888.1| DNA-binding response regulator ResD [Roseburia intestinalis L1-82]
Length = 229
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+L+ ED+ + L +G+EV + N+G + E F + + D+++P +D
Sbjct: 1 MS-KVLIIEDEVAIADLEKDYLELSGFEVETENDGVVGLKRALSEDFDMYILDLMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKQIREE-KNTPILMVSAKKDDIDKIRGLGLGADDYITKPFSPSELVARVKAHLAR 118
>gi|152988681|ref|YP_001346380.1| two-component response regulator [Pseudomonas aeruginosa PA7]
gi|150963839|gb|ABR85864.1| probable two-component response regulator [Pseudomonas aeruginosa
PA7]
Length = 246
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HVLIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|2947107|gb|AAC28777.1| regulatory protein BvrR [Brucella abortus]
Length = 237
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|27366537|ref|NP_762064.1| response regulator [Vibrio vulnificus CMCP6]
gi|27358103|gb|AAO07054.1|AE016808_74 Response regulator [Vibrio vulnificus CMCP6]
Length = 378
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + R L L Y V+ NG A + ++L DI+MPEMDG E
Sbjct: 7 TVLVVDDNSENRSLLNGLLSST-YRVLIATNGMQAISACQSHLPDIVLLDIMMPEMDGYE 65
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + ++F+T + + + KP L++ V L +K
Sbjct: 66 VCLQLKADPRTAHIPIIFLTAKSQIEDEQKGFDVGAVDYILKPISPPILMSRVRNHLKLK 125
Query: 122 N 122
+
Sbjct: 126 H 126
>gi|333025275|ref|ZP_08453339.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
gi|332745127|gb|EGJ75568.1| putative phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. Tu6071]
Length = 265
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDDD +R AL + G+ V + +G + R + L D+++P MDG+
Sbjct: 38 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF + LV + ++
Sbjct: 98 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153
>gi|331086531|ref|ZP_08335610.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330410589|gb|EGG90017.1| hypothetical protein HMPREF0987_01913 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 223
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD DM + L GYE++S +G A +K++ ++L D+ MP+MDG E
Sbjct: 3 KILVVDDDIDMITMVQDYLYLKGYEIMSAFDGEMALNKIK-FAPDIILLDVNMPQMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + EL ++F+T + KPF L++L + L +
Sbjct: 62 VCMKIRELVS-CPIIFLTAREEEEDRIKGLEIGGDDYILKPFSLKELEARIKAHLNRE 118
>gi|303256413|ref|ZP_07342427.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
gi|302859904|gb|EFL82981.1| DNA-binding response regulator [Burkholderiales bacterium 1_1_47]
Length = 218
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L GY V +G SA + PFSL++ D+ +P DG+
Sbjct: 2 RILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ T V + L KP+ L +L + LL
Sbjct: 62 VLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRR 118
>gi|255524543|ref|ZP_05391498.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186042|ref|ZP_06854447.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255511839|gb|EET88124.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296049310|gb|EFG88739.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 228
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + KIL+ EDD+++ + L K GY++V +G A +K F+L++ D+++P +
Sbjct: 1 MEKSKILIVEDDEEINNLIFHTLKKEGYDIVQFFDGKEAVEKY-NNSFNLVILDLMLPYV 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ R+ ++ + V+ ++ + KPF R+LV V L
Sbjct: 60 DGIEVLRQIRTVN-NAPVIILSAMDEETDRIIGLGMGADDYMVKPFSTRELVARVKAQLR 118
Query: 120 I 120
Sbjct: 119 R 119
>gi|161508040|ref|YP_001578007.1| two-component response regulator [Lactobacillus helveticus DPC
4571]
gi|160349029|gb|ABX27703.1| Two-component response regulator [Lactobacillus helveticus DPC
4571]
gi|323467275|gb|ADX70962.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Lactobacillus
helveticus H10]
gi|323467318|gb|ADX71005.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Lactobacillus
helveticus H10]
Length = 228
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ DI+MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|187478540|ref|YP_786564.1| heavy metal sensing two-component sytem response regulator
[Bordetella avium 197N]
gi|115423126|emb|CAJ49657.1| heavy metal sensing two-component sytem,response regulator
[Bordetella avium 197N]
Length = 223
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L L ++GY V +G SA F L+L D+++P MDG E
Sbjct: 2 RILIVEDEPKTADYLAGGLAESGYAVTVARDGRSAQHCFESALFDLVLLDVMLPGMDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F++ +V L KPF +L+ V LL
Sbjct: 62 VLRVIRRRAS-TPVLFLSARDSVQDRVKGLELGGDDYLIKPFSYAELLARVRSLLRR 117
>gi|332766713|gb|EGJ96917.1| response regulator [Shigella flexneri 2930-71]
gi|333017489|gb|EGK36802.1| transcriptional activator protein irlR [Shigella flexneri K-227]
Length = 253
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 2 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 62 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 119
>gi|331663464|ref|ZP_08364374.1| transcriptional activator protein CopR [Escherichia coli TA143]
gi|331059263|gb|EGI31240.1| transcriptional activator protein CopR [Escherichia coli TA143]
Length = 269
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 18 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 78 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 135
>gi|313681083|ref|YP_004058822.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313153798|gb|ADR37649.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 235
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD ++ L LG+AGY V G K+RE+P L++ D+ +P++DG
Sbjct: 14 KRILIIEDDPEIASLLQAELGEAGYRVDWAPGGMQGLVKLREDPPHLIVLDLGLPDLDGS 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ARRA + D+ ++ +T AV L+KPFH +L+ + L
Sbjct: 74 EIARRAKQHG-DVPIIVLTATDAVERKVQLLLGGADDYLTKPFHPAELLARIQVQLRR 130
>gi|299139390|ref|ZP_07032565.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
gi|298598659|gb|EFI54822.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX8]
Length = 236
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD + + + G G+ + + + G +++ F L++ D+++P +DG E
Sbjct: 7 RLLLIDDDRSLAALITEYCGSGGFSITAADTGEDGIRLAQQQYFLLIILDVMLPGIDGFE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T A L KPF +L+ + +L
Sbjct: 67 VLRRIR-YSSNTPILMLTTRGAAKDRIHGLESGADDYLPKPFQPEELLARIQSILRR 122
>gi|257785036|ref|YP_003180253.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
gi|257473543|gb|ACV51662.1| two component transcriptional regulator, winged helix family
[Atopobium parvulum DSM 20469]
Length = 224
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ M ++ L + Y+V +GASA + + + + D++MP+M G E
Sbjct: 2 RVLLAEDEKRMAAAIVALLKQEKYDVDHMTDGASALLALESNMYDIAILDVMMPKMSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++R+A + ++ +T + + + L+KPF +L+ + L ++
Sbjct: 62 VSRKARSKGITIPILMLTAKSQLDDKVEGLDNGADDYLTKPFQTAELLARLRA-LGRRS 119
>gi|291612955|ref|YP_003523112.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
gi|291583067|gb|ADE10725.1| two component transcriptional regulator, winged helix family
[Sideroxydans lithotrophicus ES-1]
Length = 242
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +DD+D+R L LG+ G+ + + +G + + P L++ D+ +P DG
Sbjct: 7 SPRILIVDDDEDIRNLLADYLGEQGWLISTAQDGTAMQQVLDSTPIDLIVLDLTLPGSDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + V+ +T +A L KPF R+L+ + +L
Sbjct: 67 LTLCRDLRAR-SAIPVIMLTARSAPLDRILGLEMGADDYLCKPFEPRELLVRIRNVLRR 124
>gi|215433455|gb|ACJ66693.1| sensor histidine kinase/response regulator [Myxococcus fulvus HW-1]
Length = 2476
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
++K+L+ +DD L L G +VV NG +A + + + ++L D++MPEMD
Sbjct: 2355 SKKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMD 2414
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
G E R + L ++ +T A A + L KP L+ +
Sbjct: 2415 GYETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2471
Score = 87.9 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD R +++ + G++ + G + E + DI +P +DG +
Sbjct: 2090 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2149
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRLLTI 120
R + V I+ V N+ L+KP L + N++ L
Sbjct: 2150 DRLKRSPRTRHIPVHVIS----VMDKHQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2205
Query: 121 K 121
K
Sbjct: 2206 K 2206
Score = 74.0 bits (182), Expect = 7e-12, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++LL EDDD R L+K L + G VV+ G + F ++ D+++P+ DG
Sbjct: 2208 RRLLLVEDDDVQRDSLVKLLSEGGDVVVTAVATGEEVLQSLETGEFDCVVIDLMLPDTDG 2267
Query: 62 IELARRAT--ELDPDLKVMFITGF 83
I L DL ++ TG
Sbjct: 2268 IRLVEEVKTQNRFRDLPIVIYTGK 2291
>gi|158313449|ref|YP_001505957.1| two component transcriptional regulator [Frankia sp. EAN1pec]
gi|158108854|gb|ABW11051.1| two component transcriptional regulator, winged helix family
[Frankia sp. EAN1pec]
Length = 259
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 46/116 (39%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L + G+ V +G + R ++ D+ +P +DG EL
Sbjct: 17 VLVVEDEAHIAELIRMYLVREGFAVEVRADGPAGLAAARALTPVAVILDVRLPGLDGREL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T ++KPF R+LV + +L
Sbjct: 77 LRALRADGDWVPVLLVTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRR 132
>gi|319943631|ref|ZP_08017912.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
51599]
gi|319742864|gb|EFV95270.1| transcriptional regulatory protein OmpR [Lautropia mirabilis ATCC
51599]
Length = 237
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN +K+++ +DD +R L + L + +EV + AS ++ E F L++ D ++P
Sbjct: 1 MNTSVRKLVVVDDDAKLRDLLNRYLTEQQFEVTLAADSASLNRLMQRESFDLIILDQMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + RR + ++ +T + KPF+ R+LV V+ +
Sbjct: 61 GEDGLSIIRRLRAANDRTPIIMLTAKGDDVDRIIGLEMGADDYMQKPFNPRELVARVHAV 120
Query: 118 LTIK 121
L +
Sbjct: 121 LRRQ 124
>gi|315923585|ref|ZP_07919825.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313697460|gb|EFS34295.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1317
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ K L A Y V+ +G A + + + LL++D++MP MDG+EL
Sbjct: 1072 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1130
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + ++ +T + + + KPF + L+ + LL
Sbjct: 1131 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1186
>gi|300868140|ref|ZP_07112774.1| response regulator receiver sensor signal transduction histidine
kinase [Oscillatoria sp. PCC 6506]
gi|300333875|emb|CBN57954.1| response regulator receiver sensor signal transduction histidine
kinase [Oscillatoria sp. PCC 6506]
Length = 440
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +K +L+ +D+ + L L A +EV +G SA +KV L+L DI+MP
Sbjct: 5 MEKKDIVLIVDDNSNNLGVLYDLLDNASFEVWVAQDGESAIEKVGYALPDLILLDIMMPG 64
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+DG E R L D+ V+F++ + + ++KPF +++ V
Sbjct: 65 IDGFETCNRLKANPLTADIPVIFMSAMSESIDKVKGLSLGAVDYITKPFQQEEVLARVKL 124
Query: 117 LLTI 120
L +
Sbjct: 125 HLKL 128
>gi|300173928|ref|YP_003773094.1| two-component response regulator [Leuconostoc gasicomitatum LMG
18811]
gi|299888307|emb|CBL92275.1| Two-component response regulator [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE V ++G A K+ P +L++ D++MP M+G+
Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPVMASDGKEAISKLNTNPDIALMVLDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVVKIVRK-DSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|298491243|ref|YP_003721420.1| GAF sensor-containing adenylate/guanylate cyclase ['Nostoc azollae'
0708]
gi|298233161|gb|ADI64297.1| adenylate/guanylate cyclase with GAF sensor(s) ['Nostoc azollae'
0708]
Length = 1180
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ DMR ++ + L +GY++++ NG Y+ + L++TD++MP + GIE+
Sbjct: 826 VLVVDDNPDMRSYVAEILAHSGYQIITARNGYEGYNIAQGVRPDLIITDLMMPLLTGIEM 885
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ D + ++ +T + L KPF+ R+L+ EV LL +K
Sbjct: 886 IQMIRSQDQVRGIPIILLTAKVDEETRIEGIEHGADAYLGKPFNDRELLAEVRNLLALK 944
Score = 110 bits (277), Expect = 6e-23, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMD 60
KIL+ +D+ D L ++ + Y+V+ N+G +A + + +E +++++D MP M
Sbjct: 8 KPKILVVDDEPDNLDLLYRSFYRE-YQVLRANSGPAALELLAQEGDIAVIISDQRMPMMS 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPK-NAKVLSKPFHLRDLVNEVNRLLT 119
G E PD+ + +TG+ V ++ K ++KP+ +L V + L
Sbjct: 67 GTEFLSLTATQYPDIIRIILTGYTDVEDLVEAINSGKVFKYVTKPWEAEELKAVVRQALD 126
Query: 120 IKN 122
N
Sbjct: 127 THN 129
>gi|242277823|ref|YP_002989952.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
salexigens DSM 2638]
gi|242120717|gb|ACS78413.1| multi-sensor signal transduction histidine kinase [Desulfovibrio
salexigens DSM 2638]
Length = 645
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 5/122 (4%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ D+R L L GYEV S NG +A R P ++LTDI MP MDGIEL
Sbjct: 17 ILLVDDEPDIRDLLGILLADLGYEVRSAENGEAACKSFRCNPPDIILTDIKMPGMDGIEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-----LLT 119
R + P+++V+ I+G + L +S A ++KP L +++ LL
Sbjct: 77 LRTVKKEAPEIEVIMISGHGDMQLAIESLKLNAADFITKPIDDDILSIALDKVTEKILLR 136
Query: 120 IK 121
+
Sbjct: 137 RQ 138
>gi|158521332|ref|YP_001529202.1| two component transcriptional regulator [Desulfococcus oleovorans
Hxd3]
gi|158510158|gb|ABW67125.1| two component transcriptional regulator, winged helix family
[Desulfococcus oleovorans Hxd3]
Length = 234
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEM 59
M +IL+ +DD ++ L ++ EV G V +++ DI++P++
Sbjct: 1 MTHRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E ++ + + V+ +T A + KPF+ R+L+ + +L
Sbjct: 61 DGFETLKKIRAI-SQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|158522821|ref|YP_001530691.1| multi-sensor signal transduction histidine kinase [Desulfococcus
oleovorans Hxd3]
gi|158511647|gb|ABW68614.1| multi-sensor signal transduction histidine kinase [Desulfococcus
oleovorans Hxd3]
Length = 498
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 59/115 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ D+R ++ L + EV NG A + + E F +LL D+ MP +DG++
Sbjct: 8 KILVVDDEKDIREGCVRVLRRLDCEVSMAANGHEALELLGREFFDVLLLDLKMPGIDGMD 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R + + D+ V+ ITGFA V ++ + KPF L V R L
Sbjct: 68 VLREIQQQERDILVIVITGFATVETAIEAMKQGAYDFIPKPFDPAQLRIVVERAL 122
>gi|170727318|ref|YP_001761344.1| response regulator receiver modulated metal dependent
phosphohydrolase [Shewanella woodyi ATCC 51908]
gi|169812665|gb|ACA87249.1| response regulator receiver modulated metal dependent
phosphohydrolase [Shewanella woodyi ATCC 51908]
Length = 369
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D D L + L Y V + NG A + + + ++L D++MPEMDG
Sbjct: 12 KKTVLIVDDTPDNLSLLHELLKDN-YHVKAAVNGVIALNIINKGGIDIILLDVMMPEMDG 70
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ RR D D+ ++F+T ++ A LSKP L+ V L
Sbjct: 71 YEVCRRVKADDEICDIPIIFLTAKTSIDDETMGFDLGAADYLSKPISPPLLLARVKTHLE 130
Query: 120 IK 121
IK
Sbjct: 131 IK 132
>gi|318076622|ref|ZP_07983954.1| two-component system response regulator [Streptomyces sp. SA3_actF]
Length = 266
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDDD +R AL + G+ V + +G + R + L D+++P MDG+
Sbjct: 38 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF + LV + ++
Sbjct: 98 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153
>gi|315655447|ref|ZP_07908347.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
ATCC 51333]
gi|315490387|gb|EFU80012.1| subtilin biosynthesis regulatory protein SpaR [Mobiluncus curtisii
ATCC 51333]
Length = 224
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + + K+L +A + V +C + A +R E F L++ D++M +MDG
Sbjct: 2 EHILVVDDEAAICDVIAKSLKRASFSVTACTSAKEALT-LRLEQFDLMIFDVMMSDMDGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL R E D ++F+T A + KPF +LV+ VN + +
Sbjct: 61 ELCRNVREK-VDCPILFLTAKTTETDVIQGLAMGADDYIRKPFTPSELVSRVNAHIRRE 118
>gi|302524998|ref|ZP_07277340.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
gi|302433893|gb|EFL05709.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. AA4]
Length = 264
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + G++ V+ GA A + E +++ D+++P+ DG
Sbjct: 39 RLLVVDDEPHIADLVATVARYEGWQAVTAGCGADALARAAEFAPDIVVLDLMLPDFDGFT 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + V+F+T A A L KPF + +L+ + +L
Sbjct: 99 VLDKLREKHDAVPVVFLTAKDATADRIAGLTRGGDDYLVKPFSVEELMARLRAVLRR 155
>gi|291286979|ref|YP_003503795.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
gi|290884139|gb|ADD67839.1| two component transcriptional regulator, winged helix family
[Denitrovibrio acetiphilus DSM 12809]
Length = 227
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ + L L K+ Y V + +G S DK+ + +SL++ D+++P MDG
Sbjct: 2 KILIVDDEVQLVDELKSILEKSKYSVDTAVSGDSGLDKIFDNEYSLIILDVMLPVMDGFC 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E V+ +T + V+ + L KPF + +L+ V LL N
Sbjct: 62 ILEAVREASITTPVLMLTAKSDVSDRIKGLDKGSDDYLVKPFAVSELLARVRALLRRDN 120
>gi|167945734|ref|ZP_02532808.1| sensor histidine kinase with ATPase domain, two fused [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 415
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ ++ L G V+ +G +A +++E F L+L D+ MP MDG E
Sbjct: 253 KVLLVEDNPINQQVALELLQSFGLLVLVAEDGRAALRRLQESAFDLVLMDVQMPLMDGYE 312
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R+ + L V+ +T A + LSKP L+ + L
Sbjct: 313 TTRQIRQQPELQQLPVIAMTAHAMSGDREKCLDAGMSDYLSKPIDPAKLLATLRHWL 369
Score = 90.2 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---------REEPFSLLLTDI 54
++LL +D+ +R L L +EV N A AY+ + + +PF L+L D
Sbjct: 102 RVLLVDDNPMVRTVLADMLRSFSFEVEVGANAAEAYELLMGAGAVGLAKPKPFQLVLMDW 161
Query: 55 VMPEMDGIELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
MP ++GI+ + + K++ +T F L S A VL KP + L
Sbjct: 162 HMPPVNGIDAVQHIKQELALVQQPKMILVTAFGREELMQQSQAAGLDAVLLKPANPSLLF 221
Query: 112 NEV 114
+ +
Sbjct: 222 DTI 224
>gi|110597968|ref|ZP_01386249.1| Response regulator receiver:Transcriptional regulatory protein-like
[Chlorobium ferrooxidans DSM 13031]
gi|110340417|gb|EAT58906.1| Response regulator receiver:Transcriptional regulatory protein-like
[Chlorobium ferrooxidans DSM 13031]
Length = 231
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD ++ + L L +AGY +G +A++++ + F L+L DI++P M+G EL
Sbjct: 7 LVVEDDRNLSKLLEFNLERAGYACKISESGENAFEQLSRKCFDLILLDIMLPGMNGFELC 66
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ D+ ++ +T + KPF R+L + +L
Sbjct: 67 QKIKQHQIYKDIPIIMLTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAVLKR 123
>gi|94972032|ref|YP_594072.1| two component transcriptional regulator [Deinococcus geothermalis
DSM 11300]
gi|94554083|gb|ABF43998.1| two component transcriptional regulator, winged helix family
[Deinococcus geothermalis DSM 11300]
Length = 244
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD + L L + G+ V+ GA A + + + + D ++P M G+E
Sbjct: 17 TVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQALSLLPQA--DVAVLDWMLPGMTGLE 74
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LARRA P++ ++ +T ++KPF R++V + LL
Sbjct: 75 LARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRR 131
>gi|254975899|ref|ZP_05272371.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255093285|ref|ZP_05322763.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255315032|ref|ZP_05356615.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255517702|ref|ZP_05385378.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255650814|ref|ZP_05397716.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|260683895|ref|YP_003215180.1| two-component response regulator [Clostridium difficile CD196]
gi|260687555|ref|YP_003218689.1| two-component response regulator [Clostridium difficile R20291]
gi|306520712|ref|ZP_07407059.1| two-component response regulator [Clostridium difficile QCD-32g58]
gi|260210058|emb|CBA64143.1| two-component response regulator [Clostridium difficile CD196]
gi|260213572|emb|CBE05342.1| two-component response regulator [Clostridium difficile R20291]
Length = 238
Score = 140 bits (354), Expect = 6e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD ++ + L + V+ +G A D + E L++ D++MP +D
Sbjct: 1 MNQNILVVDDDREIVDAIEFYLRPDNFNVLKAYDGLEALDILIENDIKLIIMDVMMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++ + E ++ ++ ++ + ++KPF+ +L V L
Sbjct: 61 GLKTTLKIREKR-NIPIILLSAKSEDMDKIIGLNMGADDYITKPFNPLELTARVKSQLRR 119
>gi|313497996|gb|ADR59362.1| Two component transcriptional regulator [Pseudomonas putida BIRD-1]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ GA + L++ D+ +P+
Sbjct: 1 MSQSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|294777617|ref|ZP_06743068.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
gi|294448685|gb|EFG17234.1| sensor histidine kinase/response regulator [Bacteroides vulgatus
PC510]
Length = 1408
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRDYIRSILAEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|297192126|ref|ZP_06909524.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151222|gb|EDY67354.2| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 257
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD + + L G+ V + +G +A D L++ D+++P DG+
Sbjct: 31 RRVLVVEDDATIVDAIAARLRAEGFLVQTALDGPAAVDAADAWQPDLMVLDVMLPGFDGL 90
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR P + V+ +T ++KPF +R+L V+ LL
Sbjct: 91 EVCRRVQAQRP-VPVLMLTARDDETDMLVGLGVGADDYMTKPFSMRELAARVHVLLRR 147
>gi|154483201|ref|ZP_02025649.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
27560]
gi|149736009|gb|EDM51895.1| hypothetical protein EUBVEN_00902 [Eubacterium ventriosum ATCC
27560]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 56/116 (48%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y ++ +G SA + ++L D+ +P+M
Sbjct: 1 MNKSLILVVEDDTSVRNLITTTLKAHEYRYLTAPDGQSAILEASSHNPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ ++ ++ ++ I+ + D+ L+KPF + +L+ +
Sbjct: 61 DGVEIIKKIR-TWSNMPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLR 115
>gi|110639166|ref|YP_679375.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
33406]
gi|110281847|gb|ABG60033.1| multi-sensor hybrid histidine kinase [Cytophaga hutchinsonii ATCC
33406]
Length = 1222
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D+ + L KAG E+ + NG A KV+E P+ ++L DI MP+MDGIE
Sbjct: 969 KILLVDDNAINLFVASEILRKAGCEIDTAGNGLEAIQKVKENPYRMVLMDIQMPQMDGIE 1028
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+L+ ++ +T ++ ++KP L+++V L
Sbjct: 1029 ATAEIRKLNLAYTPPIIAMTAYSMKEDKDRFMVNGMDDYIAKPIKAESLISKVKAWL 1085
>gi|332655191|ref|ZP_08420932.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
gi|332516051|gb|EGJ45660.1| DNA-binding response regulator KdpE [Ruminococcaceae bacterium D16]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y ++ NG SA + ++L D+ +P++
Sbjct: 1 MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVLEASSHNPDIILLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ R +L ++ I+ + D+ L+KPF + +L+ +
Sbjct: 61 DGVEVIHRVRS-WSNLPIIVISARSEDTDKIDALDAGADDYLTKPFSVEELLARLR 115
>gi|326789158|ref|YP_004306979.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326539922|gb|ADZ81781.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 237
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ + RFL L GY+V ++G + E + LL+ D+++P ++G+
Sbjct: 11 KRILIIEDEVKIARFLQLELQHEGYDVNMSHDGREGLNMALENNYDLLILDVMLPSLNGM 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR ++ L V+ +T V ++KPF + +L+ + L +K
Sbjct: 71 EVLRRIRQV-SSLPVIMLTAKDDVMDKVMGLDLGAQDYITKPFAIEELLARIRVLFKLK 128
>gi|260770826|ref|ZP_05879755.1| response regulator [Vibrio furnissii CIP 102972]
gi|260614063|gb|EEX39253.1| response regulator [Vibrio furnissii CIP 102972]
Length = 228
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+EV N+G + V + L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTGLLKEVLSYEGFEVSEANDGEAGLHAV-NDSVDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKKLREKW-QTPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|228968381|ref|ZP_04129376.1| DNA-binding response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228791347|gb|EEM38954.1| DNA-binding response regulator [Bacillus thuringiensis serovar
sotto str. T04001]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ +D+ +R + L GYEV++ +G A ++ E +L+ D+++P+ DG
Sbjct: 3 KILVVDDESSIRNLIRMQLEMEMEGYEVLAAADGREALERWNEG-PDVLILDVMLPDTDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R E D D+ V+ +T + + ++KPF+ +L+ V +
Sbjct: 62 YELLRLFRERDRDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELILRVKNMARR 120
>gi|260642655|ref|ZP_05416773.2| two-component system sensor histidine kinase/response [Bacteroides
finegoldii DSM 17565]
gi|260621140|gb|EEX44011.1| two-component system sensor histidine kinase/response [Bacteroides
finegoldii DSM 17565]
Length = 1343
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ +M +L L Y+V++ NG A D ++ +P ++L+D++MPEMDG++L
Sbjct: 1091 ILLVDDNIEMLDYLKGILQSK-YQVITATNGKIALDIMKTQPVDIVLSDVMMPEMDGLQL 1149
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ ++ +++ + KPF L ++N +L +
Sbjct: 1150 CKLVKRNIQTSHIPVILLSAKSSLEDQTSGIDIGADDYIGKPFSTSLLKGKINNILKAR 1208
>gi|218889615|ref|YP_002438479.1| putative two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|218769838|emb|CAW25598.1| probable two-component response regulator [Pseudomonas aeruginosa
LESB58]
Length = 246
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTTIVADGRQMRAFLEANTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R V+ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRVGKHKATPVLMLTARNDETDRIIGLEMGADDYLTKPFSARELLARINAVLRR 123
>gi|83719874|ref|YP_441579.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
E264]
gi|83653699|gb|ABC37762.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
E264]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 3 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 62
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 63 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 121
Query: 118 LTIKN 122
L +N
Sbjct: 122 LRRRN 126
>gi|56965315|ref|YP_177047.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56911559|dbj|BAD66086.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ + + + L + GY+ N+G +A ++E+ F L++ DI+MP ++G+
Sbjct: 2 EHILIVDDEIQITSIVGELLQEEGYQTTVANDGMNAIKLIKEQDFDLIILDIMMPYVNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R E D+ ++F+T ++ + ++KPF L+ + L +
Sbjct: 62 DVCRSVREFT-DVPILFVTARTSMNDQINGLNIGGDDYINKPFTHEQLLARIKTHLRRE 119
>gi|326559342|gb|EGE09769.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis 7169]
Length = 230
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59
MN KIL+ ED+ + + L + ++VV + AY V +E L+L D +MP
Sbjct: 1 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI+ ARR + D+ ++ +T ++KPF R+L++ V +
Sbjct: 61 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|312888171|ref|ZP_07747753.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
gi|311299347|gb|EFQ76434.1| two component transcriptional regulator, winged helix family
[Mucilaginibacter paludis DSM 18603]
Length = 227
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ +LL ED+ + R + +L + GY VV +G A+ + F L + D+++P
Sbjct: 1 MDKLNLLLVEDEPFLARVVQDSLEQLGYSVVHAPDGRKAFSLFHNQFFDLCIIDVMLPYT 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG L ++ + V+F+T A + L KPF L +L +N LL
Sbjct: 61 DGFTLVKQIRSSGSQVPVLFLTAKTATNDLIEGYQSGGNDYLKKPFSLEELFLRINELLK 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|312960633|ref|ZP_07775139.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311285159|gb|EFQ63734.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + GY V + G ++ R P L++ D+++P +DG+++
Sbjct: 4 ILLVEDDAALSELIASYLERNGYHVSVLSRGDHVRERARLNPPDLVILDLMLPGLDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + L ++ +T ++KP R L+ V LL +
Sbjct: 64 CRLLRDDSAGLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121
>gi|255526636|ref|ZP_05393542.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186096|ref|ZP_06854501.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255509669|gb|EET86003.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296049364|gb|EFG88793.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 225
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD R + L AGYE+ +NG A + + + L++ D++MPEM+G E
Sbjct: 3 KILVVEDDKSQARLMKAILSHAGYEIHLAHNGTIALEILDQVHIDLIVLDVMMPEMNGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ +T ++KP +L+ + LL
Sbjct: 63 FTETIRKSGNMIPILMLTAKQLTTDKIRGFQSGTDDYMTKPADEEELLWRIKALLRR 119
>gi|22298132|ref|NP_681379.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
gi|22294310|dbj|BAC08141.1| two-component response regulator [Thermosynechococcus elongatus
BP-1]
Length = 256
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/126 (20%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV----------REEPFSLLLTDI 54
IL+ ED+D +R ++ AL + GY + ++G A + + + L++ D+
Sbjct: 24 ILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILDV 83
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
++P ++G++L R + ++ I+ + L+KPF +R+++
Sbjct: 84 MLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLARC 143
Query: 115 NRLLTI 120
LL
Sbjct: 144 RALLRR 149
>gi|328952553|ref|YP_004369887.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
gi|328452877|gb|AEB08706.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
Length = 501
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ +R L GY+V + NG A + +R EP +L+L D+ MP
Sbjct: 1 MSEPYTILVVDDEKVIRDGCALILQPEGYQVATAANGQEALEILRTEPINLVLCDLKMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M +E+ A P++ ++ ITG VA + ++KPF + L V R+L
Sbjct: 61 MGALEVLEVAGTHYPEVPIIIITGHGTVANAVECMQKGAYDFVTKPFRVDHLTLVVKRVL 120
Query: 119 TIK 121
+
Sbjct: 121 EKQ 123
>gi|317494749|ref|ZP_07953161.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316917351|gb|EFV38698.1| response regulator receiver domain-containing protein
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 232
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL +DD ++ L + L G+ VV ++G A + + LLL D++MP+ +
Sbjct: 1 MN-KILLVDDDRELTSLLQELLDLEGFSVVVAHDGEQALEL-LDSSIDLLLLDVMMPKKN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ + + V+ +T + L KPF+ R+LV + +L
Sbjct: 59 GIDTLKEVRQHH-QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117
Query: 121 KN 122
N
Sbjct: 118 SN 119
>gi|300868158|ref|ZP_07112790.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
gi|300333782|emb|CBN57970.1| Two-component response regulator [Oscillatoria sp. PCC 6506]
Length = 460
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R L++ L + V + NG E L+L D+ MP++DG E
Sbjct: 3 KILVIEDESLIRETLVELLEAHDFRVSAVENGRMGVKVALSEIPDLILCDVQMPDLDGYE 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + L + +F+T +A A L+KPF +L+ + +L+ +
Sbjct: 63 VLKALRQNRLTSAVPFIFLTAQSAKAEFRRGMELGADDYLTKPFTKEELLGAIASILSKR 122
>gi|300214110|gb|ADJ78526.1| Two-component response regulator [Lactobacillus salivarius CECT
5713]
Length = 229
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD D+ L + GYEV NG A K+ P +L++ D++MP+MDG+
Sbjct: 2 KILIVDDDKDIVELLSIYVENEGYEVEKVYNGKEALSKLNMNPDIALMILDVMMPQMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R + + V+ ++ ++KPF+ +++ V LL
Sbjct: 62 EVIREVRKE-SQIPVLILSAKTDDLDKIQGLVQGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|293372359|ref|ZP_06618743.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292632542|gb|EFF51136.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 1372
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++++++++ ++ + +EV++ NG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYIAESFADS-FEVLTAYNGEEGKQQALSRIPDIVVSDIMMPVMDGIILC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ E + V+ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 RQLKEDVRTSHIPVILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLESR 1230
>gi|253680891|ref|ZP_04861694.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
gi|253562740|gb|EES92186.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 52/119 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED+ + +F+ L K +EV+ +G KV E +++ DI++P +DG
Sbjct: 4 KHKVLVIEDELSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + P + ++ +T + KPF+ +L V L+
Sbjct: 64 FKVCEILRKNHPKVGIIMLTALGQDVDKIKGLEYGADDYMIKPFNPLELAARVTSLIRR 122
>gi|227535934|ref|ZP_03965983.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
gi|227244177|gb|EEI94192.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC
33300]
Length = 225
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 56/113 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL ED+ + L L G+ V C+NG A+ +E+ + LLL D++MP MDG EL
Sbjct: 4 ILYVEDEAGLAMILSDTLASHGFAVTHCDNGGEAFSTFQEQKYDLLLIDVMMPVMDGFEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
A++ +D D+ ++F+T + KPF + +L+ + L
Sbjct: 64 AKKVRGMDTDVPIIFLTARTQTEDVVAGFHLGANDYIKKPFKIEELIVRIEAL 116
>gi|300362057|ref|ZP_07058234.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
gi|300354676|gb|EFJ70547.1| DNA-binding response regulator [Lactobacillus gasseri JV-V03]
Length = 221
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI
Sbjct: 2 KILLAEDEEQLSRVLVAAMKSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ + V+ +T A + L+KPF L++L+ +
Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|289829358|ref|ZP_06546970.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
Length = 476
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG ++ NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCITFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|260587571|ref|ZP_05853484.1| regulatory protein VanR [Blautia hansenii DSM 20583]
gi|331084554|ref|ZP_08333654.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541836|gb|EEX22405.1| regulatory protein VanR [Blautia hansenii DSM 20583]
gi|330401104|gb|EGG80698.1| hypothetical protein HMPREF0992_02578 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 237
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD D+R + L YEV +G + + +E L + DI+MP MD
Sbjct: 3 MN-HILIVEDDKDIREGVAIYLKSQSYEVFMAADGIEGLEVLEKEEIHLAIVDIMMPRMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + + E D V+ ++ + ++KPF +L+ VN +
Sbjct: 62 GITMTIKLREKH-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPMELMARVNSQMRR 120
>gi|257413137|ref|ZP_05591538.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|257204550|gb|EEV02835.1| regulatory protein VanR [Roseburia intestinalis L1-82]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ + L + GY ++ +G A + ++E LL+ D++MP +DGI
Sbjct: 6 QTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEILKENEVHLLIMDVMMPRLDGI 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ A + KPF+ +LV V L
Sbjct: 66 RATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122
>gi|281417527|ref|ZP_06248547.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
gi|281408929|gb|EFB39187.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum
JW20]
Length = 902
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAEDD ++ + L K + NG A E F L+L D+ MPEMDGIE
Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726
Query: 65 ARRATEL----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R ++ + ++ +T FA +SKPF D+ +NR+L
Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784
>gi|170755580|ref|YP_001780537.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
gi|169120792|gb|ACA44628.1| DNA-binding response regulator [Clostridium botulinum B1 str. Okra]
Length = 223
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|220918203|ref|YP_002493507.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956057|gb|ACL66441.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD + F + L G VV +G D+ F ++L D+++P DG+E+
Sbjct: 10 LLVEDDLRLAAFTREYLEGHGVAVVHATDGRRGLDEALGGRFDVVLLDLMLPGKDGLEVC 69
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+ +T A L+KPF R+L+ + ++
Sbjct: 70 RELRSR-SDVPVIVLTARGEEADRVMGLELGADDYLAKPFSPRELLARIRAVVRR 123
>gi|154503687|ref|ZP_02040747.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
gi|153795787|gb|EDN78207.1| hypothetical protein RUMGNA_01511 [Ruminococcus gnavus ATCC 29149]
Length = 311
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+D+ ++R L L GY V + NG A E L L D+ MPE+ G
Sbjct: 87 ILIADDEKEIRDILRLLLTGEGYAVCTAENGKEALVLASAE-VDLYLLDVNMPELSGFMA 145
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++F+T ++ + + + KPF +L+ V +L
Sbjct: 146 GSEIRKQF-NAPIIFLTAYSGESDKVMGFSAGADDYIVKPFSNMELLMRVKAILRR 200
>gi|134097367|ref|YP_001103028.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291009075|ref|ZP_06567048.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133909990|emb|CAM00102.1| putative two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 52/102 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V +G A D + + ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLQFNGYQVELAADGQQALDWLAAQRPDAMVLDVMMPRVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ARR DL ++ +T AV+ L KPF
Sbjct: 62 VARRLRSTGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPF 103
>gi|222055094|ref|YP_002537456.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
gi|221564383|gb|ACM20355.1| two component transcriptional regulator, winged helix family
[Geobacter sp. FRC-32]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED+ D+ + L K G+ + +G + R+ P L+L D+++P M G
Sbjct: 2 HTILVIEDERDLAELIAFNLEKEGHRPLIALDGLVGLEAARKNPPDLILLDLMLPGMAGT 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + V+ +T + KPF R+L+ V LL
Sbjct: 62 EICKILKGNGKTASIPVIMLTAKGEEIDRVVGFEVGADDYIVKPFSTRELMLRVKALLRR 121
>gi|150017764|ref|YP_001310018.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149904229|gb|ABR35062.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + L +G++ NG + F L+L D+++P DG
Sbjct: 2 RKILIIEDDKLIAELERDYLEVSGFKTEIAFNGEDGLNFALNREFDLILLDLMLPSKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L + + ++ ++ +T + KPF +LV VN L+
Sbjct: 62 QLCKEIRS-NKEIPILMVTAKKDSVDKIKGFNLGADDYIVKPFDPSELVARVNAHLSR 118
>gi|226943549|ref|YP_002798622.1| Response regulator [Azotobacter vinelandii DJ]
gi|226718476|gb|ACO77647.1| Response regulator [Azotobacter vinelandii DJ]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q +IL+ ED+ + + L A ++ + +G +R +P L++ D+++P
Sbjct: 1 MSQGRILVVEDEPKLAALIGDYLRAADFQAETLADGLRVIPLLRRQPHDLVILDLMLPGR 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ R + V+ +T L KPF R+LV V +L
Sbjct: 61 DGLDICRELRG-FSRVPVIMVTARVEEIDRLLGLETGADDYLCKPFSPRELVARVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|329930448|ref|ZP_08283988.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
gi|328934826|gb|EGG31316.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
Length = 228
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +D+ + F+ L + G+ +++ G A K R+ +L++ D ++PE+
Sbjct: 1 MAHTLLLVDDERKVIEFMEPFLRQEGFHIITAATGTEALAKARDAKPALVVLDWMLPELS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ R + + ++ +T ++KPF LR+L + +L
Sbjct: 61 GIEVCRELRK-SSRVGIIMVTARIEETDKLIGLEVGADDYMTKPFSLRELAARIRSVLRR 119
>gi|326383367|ref|ZP_08205054.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
gi|326197773|gb|EGD54960.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +DD + + + L G+ V + +G + K EPF +++ DI+MP +G E
Sbjct: 2 RVLLVDDDPAIAETVRRTLVAEGWVVDTATDGLTGLQKALSEPFDVVVLDIMMPGRNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T D+ L+KP+ LV + L
Sbjct: 62 VVRDLRRAQVWTPVLMLTAKDGEYDQADAFDFGADDYLTKPYSAVVLVARLRALARR 118
>gi|315290879|gb|EFU50248.1| response regulator receiver domain protein [Escherichia coli MS
153-1]
Length = 239
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|311281668|ref|YP_003943899.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Enterobacter cloacae SCF1]
gi|308750863|gb|ADO50615.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Enterobacter cloacae SCF1]
Length = 469
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALSGAGLSCTTFENGNEVLDALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|320107338|ref|YP_004182928.1| Fis family two component sigma54 specific transcriptional regulator
[Terriglobus saanensis SP1PR4]
gi|319925859|gb|ADV82934.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Terriglobus saanensis SP1PR4]
Length = 468
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +DD +RR + L +AGYEV ++G A+ K++E L++TD+ MP
Sbjct: 1 MKQKHILVVDDDSSLRRVMKMQLEEAGYEVSLASDGEEAWIKLQETEPYLVITDLRMP-T 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+EL R T+ V+ IT F V ++ ++KP L+ V+R +
Sbjct: 60 TGLELLRCITKEGLQTTVIVITAFGTVETAVEAMKLGAYDYVTKPVDFDALLVVVHRAME 119
Query: 120 IKN 122
+N
Sbjct: 120 RQN 122
>gi|319763422|ref|YP_004127359.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
gi|317117983|gb|ADV00472.1| heavy metal response regulator [Alicycliphilus denitrificans BC]
Length = 227
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AGY NG + L++ D+++P ++G +
Sbjct: 2 KILIVEDEPKTGEYLRQGLSEAGYVADLVPNGTDGLHMALHGAYDLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRERGLQMPVLFLTARDQVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|317132005|ref|YP_004091319.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
gi|315469984|gb|ADU26588.1| two component transcriptional regulator, winged helix family
[Ethanoligenens harbinense YUAN-3]
Length = 232
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q++L+ EDD + L ++ K G++V + + + ++ L++ D+ +P+ G
Sbjct: 2 QRLLVVEDDPALVTGLRYSMEKDGFQVRTAGSVREGWQAFSQDRPDLVVLDVGLPDGTGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R+ ++ ++F+T ++KPF LR+L++ V LL
Sbjct: 62 DLCRQIR-VENGTPILFLTACDEETQVVMGLDMGGDDYITKPFRLRELLSRVRALLRR 118
>gi|312197895|ref|YP_004017956.1| transcriptional regulator [Frankia sp. EuI1c]
gi|311229231|gb|ADP82086.1| two component transcriptional regulator, winged helix family
[Frankia sp. EuI1c]
Length = 248
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDGIE 63
+++ EDD ++ + AL A +EVV + G A + P SL++ D+++P++DG E
Sbjct: 27 VMVVEDDVNVSYVVATALRLAAFEVVEVSTGREALRVAGGDAPPSLVVMDVMLPDLDGFE 86
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D+ V+F++ + + L+KPF + +LV + +L +
Sbjct: 87 VCHRLQACGSDVPVLFLSARGNLDDRLRGLSAGADDYLAKPFSVEELVARIRVILRRR 144
>gi|271502633|ref|YP_003335659.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Dickeya dadantii Ech586]
gi|270346188|gb|ACZ78953.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Dickeya dadantii Ech586]
Length = 470
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|169335013|ref|ZP_02862206.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
17244]
gi|169257751|gb|EDS71717.1| hypothetical protein ANASTE_01419 [Anaerofustis stercorihominis DSM
17244]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + + L GY + +G A + +E L++ DI+MP++DGI
Sbjct: 6 ILVVDDDKEIVKAINIYLSNEGYNIFEAYDGYEALSVLEKEEIHLIVLDIMMPKLDGIAT 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ V+F++ + ++KPF+ +L+ V L+
Sbjct: 66 ITKVREKQ-NVPVIFLSAKSEDTDKIIGLNIGADDYVTKPFNPLELIARVKSLIRR 120
>gi|168186993|ref|ZP_02621628.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
gi|169295082|gb|EDS77215.1| regulatory protein VanR [Clostridium botulinum C str. Eklund]
Length = 235
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+A+D++++ L L K + + S NG A++ + + + DI+MP++D
Sbjct: 1 MAE-ILIADDEEEIIELLSLYLEKDKHCIYSAVNGLEAFEIISNNKVDIAIIDIMMPKID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L ++ E D+ ++ ++ + + ++KPF+ ++V VN L
Sbjct: 60 GYHLIKKIREKY-DIPIIMLSAKSEYSDKILGLDLGADDYVTKPFNAMEVVARVNAQLRR 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|331001813|ref|ZP_08325335.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330412787|gb|EGG92170.1| hypothetical protein HMPREF0491_00197 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 235
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +D+ ++ + L G++V N+ + E L + DI+MP M
Sbjct: 1 MTETNILVVDDEKEIADLVEIYLVSDGFKVFKANSAEDGLKLIENEDIHLAILDIMMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ E + ++ ++ +A ++KPF+ +L V L
Sbjct: 61 DGLEMCKKIRETH-NFPIILLSAKSADLDKILGLGTGADDYVTKPFNTLELTARVKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|331268875|ref|YP_004395367.1| winged helix family two component transcriptional regulator
[Clostridium botulinum BKT015925]
gi|329125425|gb|AEB75370.1| two component transcriptional regulator, winged helix family
[Clostridium botulinum BKT015925]
Length = 223
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+D MR+ L K G+ V NG + + ++++ DI++P +D
Sbjct: 1 MN--ILIIEDEDRMRKLLRDYFKKEGFCVFEGENGIEGLEIFKSNNINIVILDIMIPYLD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + EL + ++ +T + ++KPF + LV +V LL
Sbjct: 59 GWKVCKNIREL-SKVPIIMLTAKSEEEDKLLGYELGADDYVTKPFSPKVLVAKVKALLKR 117
>gi|320095243|ref|ZP_08026941.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces sp. oral taxon 178 str. F0338]
gi|319977827|gb|EFW09472.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces sp. oral taxon 178 str. F0338]
Length = 249
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D+ + L L ++G+ V + +G ++++DI+MP MDG E
Sbjct: 20 TVLLVDDEAAIIDGLAPFLRRSGFTVHTARDGEEGLAAHSRLHPDIVVSDIMMPHMDGRE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T + LSKPF ++LV+ + +L
Sbjct: 80 MVRRIRAGGTWTPVILLTQIDTSFERSAALDEGADDYLSKPFDPQELVSRIRAVLRR 136
>gi|315652037|ref|ZP_07905038.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
gi|315485684|gb|EFU76065.1| transcriptional regulator FeuP [Eubacterium saburreum DSM 3986]
Length = 220
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 56/116 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED++D+ L K L K Y V + +G A E + L++ D+ MP++DG+E
Sbjct: 2 RILICEDEEDILNGLAKGLRKLNYYVDTAVDGEEALSLYFESKYDLVILDLNMPKLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + E D D KV+ ++ + L KPFH ++L + L
Sbjct: 62 VLKAIREDDADSKVIILSARDTLNDKVLGLDLGANDYLVKPFHFKELEARIRALFR 117
>gi|239628736|ref|ZP_04671767.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239518882|gb|EEQ58748.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 229
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD ++ F+ +L GY + +NG S L+L D+ +P++
Sbjct: 1 MNETTILVIEDDKTIQNFMKISLKTRGYSYILADNGLSGISLFYANHPDLILLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ + + V+ ++ ++ ++KPF +L+ + L
Sbjct: 61 DGMEVLKQIRQQ-SNTPVIVVSARGQEREKINALDQGADDYVTKPFSAEELLARIRVGLR 119
Query: 120 IKN 122
KN
Sbjct: 120 HKN 122
>gi|167758971|ref|ZP_02431098.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
gi|167663378|gb|EDS07508.1| hypothetical protein CLOSCI_01317 [Clostridium scindens ATCC 35704]
Length = 236
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +R + L Y+ ++ NG A ++L D+ +P+MDG+++
Sbjct: 9 ILVVEDDAPVRNLITTTLESQNYKYMAAANGNQAVMSAASGSPDIILMDLGLPDMDGVDV 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ I+ + D+ L+KPF + +L+ + L
Sbjct: 69 IKKIR-TWSVAPIIVISARSDDHDKVDALDAGADDYLTKPFSVEELLARLRSTLRR 123
>gi|148287122|emb|CAK36855.1| RisA response regulator [Bordetella ansorpii]
Length = 189
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 47/107 (43%)
Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDPD 74
R L + L + G+ V + + E F LL+ D+++P DG+ + RR +
Sbjct: 1 RDLLRRYLSEQGFNVSVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHDN 60
Query: 75 LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ +T A LSKPF+ R+L+ +N +L +
Sbjct: 61 TPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRR 107
>gi|2598275|emb|CAA73687.1| FeuP protein [Brucella suis 1330]
Length = 229
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+ R L +A+ AGY V S +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RILIVEDDKDLNRQLSEAMIAAGYVVDSAYDGEEGHYLGDTEPYDAVVLDIGLPQMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VVERWRRSGRTIPVLMLTARDRWSDKVAGIDAGADDYITKPFHIEEVLARLRALIRR 118
>gi|321313923|ref|YP_004206210.1| two-component response regulator YcbM [Bacillus subtilis BSn5]
gi|320020197|gb|ADV95183.1| two-component response regulator (YcbM) [Bacillus subtilis BSn5]
Length = 230
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q+ILL EDD + + L K G+ +V +G ++ + L+L DI++P+++G+
Sbjct: 2 QRILLVEDDHSISEMVDHYLTKEGFGIVYAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E ++ V+ I+ ++KPF + +L V +
Sbjct: 62 DFLKIIREK-SNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRR 118
>gi|289704826|ref|ZP_06501244.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
gi|289558442|gb|EFD51715.1| response regulator receiver domain protein [Micrococcus luteus
SK58]
Length = 276
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + R + L +AGYEV + G +A R +++ D+ +P +DGIE
Sbjct: 54 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 113
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T + A ++KPF +R+LV V ++
Sbjct: 114 VCRRVRA-FSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRR 169
>gi|257790535|ref|YP_003181141.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|257474432|gb|ACV54752.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + ++L Y V C++G A D + E F L++ D+ +P +DG+
Sbjct: 2 RILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGMT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-LTI 120
+ + + D + KV+ ++ V L+KPFHL +L + L L
Sbjct: 62 VLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRR 119
>gi|226310528|ref|YP_002770422.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226093476|dbj|BAH41918.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 238
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +ILL +D++ + + L L K G+ ++ +C A A V E+ + LL+ D+++P
Sbjct: 1 MEKEARILLVDDEEAILQMLQTVLKKEGFVQIDTCTTAAEAIRLVEEKTYDLLILDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ G EL + + F+T A ++KPFH ++V +
Sbjct: 61 DKSGFELCGAVRQRTK-APIFFLTAKGTDFDKLSGFAYGADDYITKPFHPLEVVARMKAH 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|212633931|ref|YP_002310456.1| DNA-binding transcriptional regulator TorR [Shewanella
piezotolerans WP3]
gi|212555415|gb|ACJ27869.1| Response regulator receiver:Transcriptional regulatory protein
[Shewanella piezotolerans WP3]
Length = 236
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ +R L K GY+VV +G + + + L++ DI +P D
Sbjct: 1 MGYRVLVVDDEAVIRARLKGYFEKEGYQVVEAQDGEQMWYEFERQHIDLVMLDINLPGTD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR D+ ++ +TG ++KPF LR+L+ V LL
Sbjct: 61 GLSLARELRSRG-DVGIILVTGRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLL 117
>gi|153006247|ref|YP_001380572.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter sp. Fw109-5]
gi|152029820|gb|ABS27588.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. Fw109-5]
Length = 455
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +++ L +AL GY V + + G A DK+ P ++ D+ MP++D
Sbjct: 1 MAATILVVDDEKNIQLTLSRALSMEGYVVEAASGGREALDKIAALPVDAVVMDVRMPDLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVNEVNRLLT 119
G+E+ RRA E PDL V+ ++G ++ + L KP L+ V L
Sbjct: 61 GLEVLRRARETRPDLPVVIMSGHGSLETVRSAFKLGAFDYLEKPITEKDKLLVAVKNALA 120
Query: 120 IK 121
++
Sbjct: 121 LR 122
>gi|117168587|gb|ABK32252.1| Amb4 [Sorangium cellulosum]
Length = 461
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D+ + L L K G++ + A A + + E F +++TD+ M M
Sbjct: 1 MSGRVLIVDDERGVCELLDAGLKKRGFQAAWRTSAAEALELLGAEDFDVVVTDMTMRGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R + PDL V+ IT F ++ + ++KPF L L V R L
Sbjct: 61 GLELCERIAQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRH 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|86358026|ref|YP_469918.1| two-component response regulator protein [Rhizobium etli CFN 42]
gi|86282128|gb|ABC91191.1| probable two-component response regulator protein [Rhizobium etli
CFN 42]
Length = 246
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFLEANAVDLIVLDIMMPGDDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T L+KPF +R+L+ + +L
Sbjct: 66 LCRELRAGRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAVRELLARIKAVLRR 123
>gi|85375211|ref|YP_459273.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594]
gi|84788294|gb|ABC64476.1| DNA-binding response regulator [Erythrobacter litoralis HTCC2594]
Length = 248
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ +R L + L G+ + ++ A A + E + L DI+MP DG+
Sbjct: 12 HILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E DL V+ +T ++KPF R+LV + +L
Sbjct: 72 LTRHLIE-TRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRR 127
>gi|56476560|ref|YP_158149.1| two component response regulator [Aromatoleum aromaticum EbN1]
gi|56312603|emb|CAI07248.1| Two component response regulator [Aromatoleum aromaticum EbN1]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ V +G + + L++ D+++P +DG
Sbjct: 2 KILIVEDEPKTGDYLRQGLAEAGFVVDLARDGLDGLHLALDGDYDLMVLDVMLPSLDGWG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+F+T V L KPF +L+ V LL
Sbjct: 62 VLQTVRRSGRDMPVLFLTARDQVEDRVRGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|119718738|ref|YP_925703.1| response regulator receiver [Nocardioides sp. JS614]
gi|119539399|gb|ABL84016.1| response regulator receiver [Nocardioides sp. JS614]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 54/106 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L ++L GYEVV +GA A + +++ D++MP +DG+E
Sbjct: 10 RVLVVDDDKAVRESLRRSLEFNGYEVVLAADGAEALAGISAAAPDVVVMDVMMPRLDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
R DL ++ +T AV + L+KPF L++
Sbjct: 70 TTRALRTAGNDLPILVLTARDAVGDRVEGLDAGADDYLTKPFALQE 115
>gi|299145146|ref|ZP_07038214.1| putative two-component system sensor histidine kinase/response
regulator hybrid [Bacteroides sp. 3_1_23]
gi|298515637|gb|EFI39518.1| putative two-component system sensor histidine kinase/response
regulator hybrid [Bacteroides sp. 3_1_23]
Length = 1317
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L Y + +G A ++ ++++DIVMP MDG+ L
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ I+ A+V ++ + KPFH R +++ + LL+ +
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187
>gi|229160173|ref|ZP_04288173.1| Two-component response regulator [Bacillus cereus R309803]
gi|228623307|gb|EEK80133.1| Two-component response regulator [Bacillus cereus R309803]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ + + L L K G+ + + + A + + L+L D+++P G +
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTGQHNYDLILLDVMLPGQSGFD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D + F++ A+ + ++KPF+ ++V + L
Sbjct: 66 ICPIIRQQT-DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARIKAQLRR 121
>gi|220912548|ref|YP_002487857.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
gi|219859426|gb|ACL39768.1| two component transcriptional regulator, winged helix family
[Arthrobacter chlorophenolicus A6]
Length = 240
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L L GY V + ++GASA LL+ D+ +P+MDG++
Sbjct: 19 RVLVVDDDPHLLKALRITLAAHGYAVDAASDGASALVAASRHAPDLLILDLGLPDMDGVD 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R L V+ ++ A + ++KPF L +L+ + L +
Sbjct: 79 VLRDLR-RWSTLPVLVLSARHGSADKVGALDAGADDYITKPFGLDELLARLRA-LQRR 134
>gi|167629726|ref|YP_001680225.1| transcriptional regulator, putative [Heliobacterium modesticaldum
Ice1]
gi|167592466|gb|ABZ84214.1| transcriptional regulator, putative [Heliobacterium modesticaldum
Ice1]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ D+ + + L G++V+ ++G SA D + E F+L + DI++P+MDG
Sbjct: 2 RKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDGS 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + V+ +T + + KPF L +L V +L
Sbjct: 62 EVLQYIRRKTSK-PVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRR 118
>gi|149280641|ref|ZP_01886755.1| two-component system sensor histidine kinase/response regulator
hybrid [Pedobacter sp. BAL39]
gi|149228625|gb|EDM34030.1| two-component system sensor histidine kinase/response regulator
hybrid [Pedobacter sp. BAL39]
Length = 1338
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R F+ L + +V+ NG A + + L+++DI+MP MDG+EL
Sbjct: 1083 ILVVEDNPEIRTFITNILQ-EDFTIVAVENGEKALKALNDVSVQLIISDIMMPVMDGLEL 1141
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + ++ +T + + + KPF L+++V LLT+++
Sbjct: 1142 CKTIKGNIDYAHIPIVLLTAKNTLQSKIEGLEVGADAYIEKPFSPNHLLSQVVNLLTLRD 1201
>gi|189424148|ref|YP_001951325.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
gi|189420407|gb|ACD94805.1| two component transcriptional regulator, winged helix family
[Geobacter lovleyi SZ]
Length = 239
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD+++ L K + + V +G + + + F L++ D+++ DG L
Sbjct: 5 LIVDDDEEILSLLTKFFSQHHHSVTVAVDGTEMFTALEKNSFDLIILDVMLKGEDGFSLC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ +T + L+KPF+ R+L+ V +L
Sbjct: 65 RRLR-MVSKIPVIILTAMGDLTDRIVGLEIGADDYLTKPFNARELLARVKAVLRR 118
>gi|85708491|ref|ZP_01039557.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
gi|85690025|gb|EAQ30028.1| phosphate regulon response regulator [Erythrobacter sp. NAP1]
Length = 229
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ K+LL EDD + L GY V +G A E+ L++ D ++
Sbjct: 1 MSAAKLLLVEDDPALSELLEYRFQNEGYNVRCTGDGDEAMVLASEDVPDLIILDWMIEGT 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR + + ++ +T A L+KPF R+L+ V +
Sbjct: 61 SGIEVCRRLRRDKETAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAV 120
Query: 118 LTI 120
+
Sbjct: 121 MRR 123
>gi|318040455|ref|ZP_07972411.1| two-component system response regulator [Synechococcus sp. CB0101]
Length = 239
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +LLA+DD +R+FL L + GY V SC +G A ++R+EP LL+ D ++P++
Sbjct: 1 MAATSVLLADDDARLRQFLELELREEGYAVHSCGDGIGALTQIRQEPPDLLVLDWMLPDL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+E+ +R + V+ +TG AV ++ L KPF + +
Sbjct: 61 SGVEVCQRLRSTGVQVPVLMLTGRDAVKDRVEALDAGADDYLVKPFSIEE 110
>gi|282895905|ref|ZP_06303945.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Raphidiopsis brookii D9]
gi|281199150|gb|EFA74019.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Raphidiopsis brookii D9]
Length = 369
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D D + L GY + S ++GA+A K + P L+L D++MPEMDG E
Sbjct: 11 RILVVDDIRDNLILVRTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGYE 70
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ IT F + + + KPF +L+ V LL +K
Sbjct: 71 VTRTIRSYTNIGYVPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRLK 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|325981380|ref|YP_004293782.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
gi|325530899|gb|ADZ25620.1| multi-sensor hybrid histidine kinase [Nitrosomonas sp. AL212]
Length = 916
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAED+ + L + G V ++G A D +R + ++L D MP MDG E
Sbjct: 662 VLLAEDNPVNQEVAKAMLSRLGLNTVIAHDGKQAVDLIRNHHYDIILMDCQMPVMDGFEA 721
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + + ++ +T A LSKP+ L L ++ + L
Sbjct: 722 TAQIRQHLNKIPIIALTANATEDDRTQCLNAGMDDFLSKPYTLDQLQQKILQWL 775
Score = 92.5 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58
+IL+ +D+ R L L + V ++ A + + EP+ L++ D+ MP+
Sbjct: 515 RILVVDDNQTNREILRLQLQNWKIQAVCTHSADHALFAMTKACNINEPYHLVILDMHMPK 574
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG++LA++ ++M +T + + ++KP ++L++ +
Sbjct: 575 MDGLQLAKKIHADPTLNKTRIMMLTSTHHDVTQLAKDNAGILRYVNKPVRQKELIDIIMD 634
Query: 117 LLTI 120
++
Sbjct: 635 VMGR 638
>gi|251778767|ref|ZP_04821687.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083082|gb|EES48972.1| regulatory protein VanR [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 237
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D+ ++ + L L K G+ V + + L++ DI++P+
Sbjct: 1 MNNKILIVDDEIEILKLLETVLKKEGFNSVYTAKTLKEGLAEFNRVKPELVILDIMLPDG 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + ++ ++F++ A ++KPF +++ V L
Sbjct: 61 DGYEICKDIRSK-SNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|197122275|ref|YP_002134226.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
gi|196172124|gb|ACG73097.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. K]
Length = 464
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 66/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++
Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKAERWSILIVDLKMPGMDGLQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ A +L P+L V+ +T +A V + L KPF +L + ++++ +
Sbjct: 67 VLEEAKKLQPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124
>gi|148557691|ref|YP_001265273.1| two component transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148502881|gb|ABQ71135.1| two component transcriptional regulator, winged helix family
[Sphingomonas wittichii RW1]
Length = 230
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILL EDD F+ L + G+ V +NG + + ++ D ++P MD
Sbjct: 1 MSRKILLVEDDAATADFVATGLSEHGFVVDRADNGRDGLFHATDGSYDCVILDRMLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ + + V+ ++ A + L+KPF +L+ V L+
Sbjct: 61 GMAVLGAIRAAGIETPVIILSALGAAEDRVKGLEGGSDDYLTKPFAFAELLARVRLLIR 119
>gi|156742755|ref|YP_001432884.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|156234083|gb|ABU58866.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
Length = 266
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++ILL +D+ ++R L L +AGY+V + + GA A + E+ F LL+ D+ MP +DG
Sbjct: 4 SERILLVDDEANIRLTLSAMLTRAGYDVTTASGGAEAITLLEEQTFDLLIVDLKMPGVDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+++ A PD+ ++ +TG ++ + L K ++ V L
Sbjct: 64 MQVVTSARAHHPDVPIIILTGHGSLETAIEGLRHGIFDYLLKNTEPAKVLERVQAAL 120
>gi|85716223|ref|ZP_01047197.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
gi|85696895|gb|EAQ34779.1| two component diguanylate cyclase [Nitrobacter sp. Nb-311A]
Length = 457
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D R L L ++V++ +NGA A + ++L D++MP+MD
Sbjct: 1 MSARVLVVDDIPANVRLLEARLSAEYFDVITASNGAQALETCARAECDIILLDVMMPDMD 60
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L V L
Sbjct: 61 GFEVCRRLKANPATHFIPVVMVTALDSPSDRVRGLEAGADDFLTKPVSDVVLTARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.0 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D L L + + + + A + E + LL+ + + DG+
Sbjct: 157 RILLVDDRPSSYERLASMLSAE-HAIDIEPDPSEALFRAAESNYDLLIVSLGLENFDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L +A E + ++ + L P +L+
Sbjct: 216 LCSQARSLERTRHVPILAVADVDDNGRLLRGLEIGVNDYLLLPIDKNELLA 266
>gi|191170729|ref|ZP_03032281.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Escherichia coli F11]
gi|300974717|ref|ZP_07172706.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|300981340|ref|ZP_07175476.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|301050614|ref|ZP_07197482.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|190908953|gb|EDV68540.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Escherichia coli F11]
gi|300297680|gb|EFJ54065.1| response regulator receiver domain protein [Escherichia coli MS
185-1]
gi|300308850|gb|EFJ63370.1| response regulator receiver domain protein [Escherichia coli MS
200-1]
gi|300409000|gb|EFJ92538.1| response regulator receiver domain protein [Escherichia coli MS
45-1]
gi|307629398|gb|ADN73702.1| DNA-binding response regulator [Escherichia coli UM146]
gi|324010967|gb|EGB80186.1| response regulator receiver domain protein [Escherichia coli MS
60-1]
Length = 239
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|189346302|ref|YP_001942831.1| two component transcriptional regulator, winged helix family
[Chlorobium limicola DSM 245]
gi|189340449|gb|ACD89852.1| two component transcriptional regulator, winged helix family
[Chlorobium limicola DSM 245]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD ++ + L L +AGY+ G A D++ + F L+L DI++P +DG E+
Sbjct: 7 LVVEDDQNLAKLLGYNLERAGYKYHISETGEDALDQLLKRSFDLILLDIMLPGIDGFEVC 66
Query: 66 RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + DL ++ +T + KPF R+L + +L
Sbjct: 67 RRIRQHQMLKDLPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELNLRIRAILKR 123
>gi|323357334|ref|YP_004223730.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323273705|dbj|BAJ73850.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 326
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + ++ EDD D+R L++ L AG+ VS NG V + D+ MP +D
Sbjct: 7 MLKTAVIVEDDPDIRHLLVEVLEAAGFSTVSVGNGIDGVRAVIAYQPLITTLDVNMPGID 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E ARR + D ++ +TG A + + KPF R+L + LL
Sbjct: 67 GFEAARRIRQQ-SDTYIIMLTGLEEEADVVLGLGAGADEYVVKPFRPRELRARIEALLRR 125
>gi|310639938|ref|YP_003944696.1| sensor protein [Paenibacillus polymyxa SC2]
gi|309244888|gb|ADO54455.1| Sensor protein [Paenibacillus polymyxa SC2]
Length = 1046
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 3/122 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
++L +DD R L + L G VV+ ++ A + F L++TD +MPEM GI
Sbjct: 714 RVLAVDDDGVNLRVLEELLYATGCSVVAVDHAEEALQLLNGRARFDLVITDWMMPEMSGI 773
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR E +L V+ +T L KP +L V LL +
Sbjct: 774 ELCRRIREGYSLSELPVLLLTARDLPGDIHAGFMAGANDFLRKPVDAEELKARVRTLLNM 833
Query: 121 KN 122
+N
Sbjct: 834 RN 835
>gi|260103047|ref|ZP_05753284.1| response regulator [Lactobacillus helveticus DSM 20075]
gi|260083137|gb|EEW67257.1| response regulator [Lactobacillus helveticus DSM 20075]
gi|328464398|gb|EGF35807.1| two-component response regulator [Lactobacillus helveticus MTCC
5463]
Length = 228
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P +L++ DI+MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLTTTPDIALMILDIMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 EVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|228997630|ref|ZP_04157239.1| Uncharacterized sensory transduction protein ykoG [Bacillus
mycoides Rock3-17]
gi|228762092|gb|EEM11029.1| Uncharacterized sensory transduction protein ykoG [Bacillus
mycoides Rock3-17]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
IL+ ED++ + FL L GY V +G + E+ + ++L D+++P ++G+
Sbjct: 2 HHILIIEDEESLAEFLELELKYEGYAVEVQYDGRKGLEAAIEKNYDIILLDLMLPGLNGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR + ++ +T ++ L KPF + +L+ + + +
Sbjct: 62 EVCRRLRA-TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARIRVIFRRE 119
>gi|224371741|ref|YP_002605905.1| response regulator [Desulfobacterium autotrophicum HRM2]
gi|223694458|gb|ACN17741.1| response regulator [Desulfobacterium autotrophicum HRM2]
Length = 450
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M QKI L+ +D+ +R L K GY + +G +A + ++ F +L D+ MP
Sbjct: 1 MKQKISVLIVDDELIVRESLFHWFKKEGYTADTAPSGEAALGMLEKQSFDVLFVDMKMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+EL R+ E PD V+ IT + ++ + A L KPF L + ++L
Sbjct: 61 MDGLELVRQTRERYPDSSVVIITAYGSIDTAVTAMKKGAADYLLKPFKPDQLALVMEKIL 120
Query: 119 TIK 121
K
Sbjct: 121 HQK 123
>gi|153875815|ref|ZP_02003442.1| Response regulator receiver protein [Beggiatoa sp. PS]
gi|152067721|gb|EDN66558.1| Response regulator receiver protein [Beggiatoa sp. PS]
Length = 341
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++K +L+ +D+ + + L L + +G A + ++ L+L DI+MP+M
Sbjct: 1 MSKKLVLVVDDNSENLKVLGNILKEHDLSPAFAQSGFKALTSINKKIPDLILLDIMMPDM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ +R E + ++F+T ++KPF+ R+L++ VN
Sbjct: 61 DGFEVCKRLKQDETTKGIPIIFLTAKVETDDVVTGLELGAVDYVTKPFNSRELMSRVNTH 120
Query: 118 LTIK 121
L +K
Sbjct: 121 LALK 124
>gi|124515360|gb|EAY56870.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Leptospirillum rubarum]
gi|206601661|gb|EDZ38144.1| Putative two component, sigma54 specific, transcriptional
regulator, Fis family [Leptospirillum sp. Group II
'5-way CG']
Length = 489
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +LL ED++ +R L + GY V + +G R P +L+ D+VMP +
Sbjct: 1 MN--VLLVEDEESIREAFAMGLSERGYVVQTAPDGEEGLRCFRTSPPDILVLDMVMPGLS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ + DPD+ V+ +T V ++ ++K + +L + + +
Sbjct: 59 GLEVLQEVRSEDPDIPVIVLTARGTVKDAVEAMRLGAFDFVTKNIDMDELFHSLTNAVR 117
>gi|148546949|ref|YP_001267051.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148511007|gb|ABQ77867.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ GA + L++ D+ +P+
Sbjct: 1 MSQSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|307325774|ref|ZP_07604974.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306888562|gb|EFN19548.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 225
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + R L+ L G+ V +GA +V E P+ ++ DI++P ++G +
Sbjct: 2 RVLVVEDHPMLGRALVHGLTTEGFAVDLATDGAEGLYRVGETPYDAIVLDIMLPRVNGYD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T D L+KPF L ++ L+
Sbjct: 62 VCRRLRAAKDWTPVLMLTAKDGEYDEADGLDIGADDYLTKPFSYVVLTARLHALIRR 118
>gi|307328135|ref|ZP_07607315.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306886254|gb|EFN17260.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 257
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD +R + AL + G+ V + +G + + RE+ LLL D+++PE+DGI
Sbjct: 21 HLLLVEDDKVIRNTVRMALERYGFTVFTAGDGLTGLEIFREKQPDLLLLDVMLPELDGIG 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E ++ ++ + KP LV + LL
Sbjct: 81 LCRRVRE-FSLAPILMMSARGDALDVVSGLEAGADDYVIKPCESAVLVARIRSLLRR 136
>gi|269118927|ref|YP_003307104.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
gi|268612805|gb|ACZ07173.1| two component transcriptional regulator, winged helix family
[Sebaldella termitidis ATCC 33386]
Length = 232
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ EDD +++ + L K + V++ N A + ++ L++ DI++P +
Sbjct: 1 MKKNTILVVEDDLEIKTLIQFFLEKENFNVITAQNSGKALEMLQNNKPELVILDIMLPGL 60
Query: 60 DGIELARRATE--LDPDLKVM-FITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+G+E+A+ + + +T D L KPF R+L+ + +
Sbjct: 61 NGLEIAKLIKKESHKYGTPFIFMLTAKTETEDVIDGFQAGCDDYLRKPFDPRELILRIKK 120
Query: 117 LLTIK 121
LL++K
Sbjct: 121 LLSLK 125
>gi|260175353|ref|ZP_05761765.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Bacteroides sp. D2]
Length = 1321
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ DM F+ K L A Y V+ +G A + + + LL++D++MP MDG+EL
Sbjct: 1076 ILVVEDNQDMLTFIAKQLSSA-YSVLKAKDGVEALEILEDANIDLLISDVMMPRMDGMEL 1134
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + ++ +T + + + KPF + L+ + LL
Sbjct: 1135 CHRLKTDLTYSHIPIVLLTAKTNLESKIEGLKLAADAYIEKPFSVEYLIATIESLL 1190
>gi|228990198|ref|ZP_04150168.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228769561|gb|EEM18154.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N +LL +D+ + + L L K G+ + + + A V + + L++ D+++P
Sbjct: 3 NANVLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D + F+T ++ ++KPF+ ++V + L
Sbjct: 63 GFDICPIIRQKT-DCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|228990825|ref|ZP_04150790.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228769351|gb|EEM17949.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 250
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ ILL +D+ + L+ L K + V + NG+ + V+ PF ++L D+++P++D
Sbjct: 14 TENILLVDDEQGILDMLVLTLKKENFIHVTTALNGSETLNLVKNHPFDIILLDVMLPDID 73
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R+ + ++F+T ++ ++KPF+ ++ +N L
Sbjct: 74 GFELCRQIRN-YTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRG 132
Query: 121 KN 122
++
Sbjct: 133 QS 134
>gi|210622859|ref|ZP_03293382.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
gi|210153964|gb|EEA84970.1| hypothetical protein CLOHIR_01330 [Clostridium hiranonis DSM 13275]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL+ +D+ D+ + L K + G+EV+ +G +K + L+L DI+MP+
Sbjct: 1 MTKLSTILIIDDEKDLVKLLGKKIKDNGHEVLVAFDGEEGIEK-SKLNPDLILLDIMMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG E+ ++ + + ++F++ + ++KPF LR+L+ ++ L
Sbjct: 60 IDGFEVCQKIRD-NVVCPIIFLSARQSETDKIRGFNLGGDDYITKPFGLRELLAKIEANL 118
Query: 119 TIK 121
+
Sbjct: 119 RRE 121
>gi|160884120|ref|ZP_02065123.1| hypothetical protein BACOVA_02097 [Bacteroides ovatus ATCC 8483]
gi|156110462|gb|EDO12207.1| hypothetical protein BACOVA_02097 [Bacteroides ovatus ATCC 8483]
Length = 1309
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++D R+F++ L + V G A + + SL+++D+ MP M+G+EL
Sbjct: 1065 LIVEDNEDFRQFIVDCLKDR-FTVYEAEQGEKAMEILALHDISLVISDVRMPIMNGLELC 1123
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + V+ +T A + ++KPF+L L+ + +LL
Sbjct: 1124 NKIKGDFRYSHIPVILLTARTAQEHMLEGLREGADDYITKPFNLDILLLRIQKLLE 1179
>gi|158522749|ref|YP_001530619.1| two component, sigma54 specific, Fis family transcriptional
regulator [Desulfococcus oleovorans Hxd3]
gi|158511575|gb|ABW68542.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Desulfococcus oleovorans Hxd3]
Length = 451
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + + L L G+E+++ +NG A + ++L DI MP +DGIE
Sbjct: 5 VLIVDDEPSILQSLGGLLSDEGFEILTASNGYEALKLIETASPDIVLLDIWMPGIDGIET 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ P + V+ ITG + ++ + KP + ++ ++ L +
Sbjct: 65 LKEIKAASPHIPVVIITGHGTIETAVNATKIGAFDFIEKPLSIDKVIVAIHNALNFR 121
>gi|104781058|ref|YP_607556.1| DNA-binding response regulator [Pseudomonas entomophila L48]
gi|95110045|emb|CAK14750.1| putative DNA-binding response regulator [Pseudomonas entomophila
L48]
Length = 222
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L L + GY V +G A + + EP+ L++ D+ +P + G+E
Sbjct: 2 RLLLVEDNVPLADELTATLQRQGYAVDWLADGRDAVYQGQSEPYDLIVLDLGLPGLPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + A + L+KPFH +L + LL
Sbjct: 62 VLAQWRAANLATPVLILTARGSWAERIEGLKAGADDYLTKPFHPEELQLRIQALLRR 118
>gi|92112237|ref|YP_572165.1| two component heavy metal response transcriptional regulator
[Chromohalobacter salexigens DSM 3043]
gi|91795327|gb|ABE57466.1| two component heavy metal response transcriptional regulator,
winged helix family [Chromohalobacter salexigens DSM
3043]
Length = 223
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ +L + LG+AGY V +G + E F L++ D+++P +DG E
Sbjct: 2 RILLVEDESKTADYLARGLGEAGYRVEVARDGLDGRHLIEEADFELIILDVMLPGLDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+F+T AV L KPF +L+ V LL
Sbjct: 62 LLRLIRRHG-QVPVLFLTARDAVEYRVKGLELGADDYLVKPFSFVELLARVRTLLRR 117
>gi|26990850|ref|NP_746275.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|24985860|gb|AAN69739.1|AE016610_5 transcriptional regulatory protein KdpE [Pseudomonas putida KT2440]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ GA + L++ D+ +P+
Sbjct: 1 MSQSATLLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|331268624|ref|YP_004395116.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
gi|329125174|gb|AEB75119.1| DNA-binding response regulator [Clostridium botulinum BKT015925]
Length = 227
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ + + L Y+VV+ G A + E L++ D+++P+MDG +
Sbjct: 2 KILLVDDEESILNLVKMNLMFENYDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGFQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ ++ + ++KPF R+L+ + +
Sbjct: 62 VIHEIQNINSEIPIIVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRR 118
>gi|307305644|ref|ZP_07585391.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
gi|307317647|ref|ZP_07597086.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306896805|gb|EFN27552.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306902347|gb|EFN32943.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V + + A K+ F LL+ D++MP GI
Sbjct: 13 HLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIA 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ + ++ +T A + L KPF R+LV +N +L
Sbjct: 73 LTQSLRQIKS-VPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRR 128
>gi|293373563|ref|ZP_06619914.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
gi|292631461|gb|EFF50088.1| response regulator receiver domain protein [Bacteroides ovatus SD CMC
3f]
Length = 1317
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L Y + +G A ++ ++++DIVMP MDG+ L
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ I+ A+V ++ + KPFH R +++ + LL+ +
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187
>gi|238787668|ref|ZP_04631466.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii
ATCC 33641]
gi|238724455|gb|EEQ16097.1| Transcriptional regulatory protein tctD [Yersinia frederiksenii
ATCC 33641]
Length = 221
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 57/115 (49%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L ED ++ +L KAL G+ V N+G +A ++ E ++L++ D+ +P ++G++L
Sbjct: 1 MLVEDHPELSHWLQKALTHVGFAVDVANDGVAADHLLQNENYALVVLDVALPRLNGLDLL 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+ +T VA L+KPF + +L + LL
Sbjct: 61 ARLRKRGQTLPVLLLTARTEVADRVKGLNLGADDYLTKPFEMDELEARIRALLRR 115
>gi|162449627|ref|YP_001611994.1| two component system transcriptional regulatory protein [Sorangium
cellulosum 'So ce 56']
gi|161160209|emb|CAN91514.1| two component system transcriptional regulatory protein [Sorangium
cellulosum 'So ce 56']
Length = 234
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ MRRFL L GY +V G+ + L+L D+ +P+MDG+E+
Sbjct: 8 VLLIEDEPQMRRFLRAMLAARGYRLVEAETGSDGIAQATTRNPDLVLLDLGLPDMDGLEV 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
RR E + ++ ++ D+ L+KPF +L+ + L
Sbjct: 68 TRRLRE-WSAVPIIVLSARGQEQDKIDALDGGADDYLTKPFSAGELLARLRVALR 121
>gi|62127249|gb|AAX64952.1| Copper resistance; transcriptional regulatory protein [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
Length = 248
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 138
>gi|300726408|ref|ZP_07059858.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella bryantii B14]
gi|299776308|gb|EFI72868.1| putative DNA-binding response regulator/sensor histidine kinase
[Prevotella bryantii B14]
Length = 937
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++DMR +L L Y V+ +G R++ +++ DI+MP MDG+E
Sbjct: 667 ILIIDDNNDMREYLRILLKAQ-YHVLEAVDGKIGLSMARKQVPDIIICDIMMPVMDGLEF 725
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + V+ ++ + ++KPF L+ ++ LL +
Sbjct: 726 TRALKKDTVTSHIPVILLSARSLDEQKVQGYQEGADSYITKPFQADVLIARIDNLLKSR 784
>gi|283788536|ref|YP_003368401.1| two-component response regulator [Citrobacter rodentium ICC168]
gi|282951990|emb|CBG91717.1| two-component response regulator [Citrobacter rodentium ICC168]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ R ++ + L +AGY V ++G +E ++L++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTRDWVSQGLSEAGYVVDQASDGKEGLRFALQESYALIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + + V+ +T AV L KPF +L+ V L
Sbjct: 62 VLKALRTAN-QTPVICLTARDAVEDRVKGLESSANDYLVKPFSFAELLARVRAQLR 116
>gi|317154217|ref|YP_004122265.1| sigma-54 factor interaction domain-containing protein
[Desulfovibrio aespoeensis Aspo-2]
gi|316944468|gb|ADU63519.1| sigma-54 factor interaction domain-containing protein
[Desulfovibrio aespoeensis Aspo-2]
Length = 452
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M + IL+ +DD+++ + L L G + + +A + + EP L+++D+ M
Sbjct: 1 MTKAHIPTILVVDDDENILQVLEARLLSTGLNPLMADRAETALEMLACEPVDLVVSDVKM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P M G L R E P + V+ +T + S A L+KPF ++LV +
Sbjct: 61 PGMGGHGLLREILEHWPHIPVIMLTAHGTIPDAVGSIQAGAADYLTKPFDGKELVRRIRA 120
Query: 117 LLT 119
+L
Sbjct: 121 ILE 123
>gi|288941792|ref|YP_003444032.1| Fis family two component sigma54 specific transcriptional regulator
[Allochromatium vinosum DSM 180]
gi|288897164|gb|ADC63000.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Allochromatium vinosum DSM 180]
Length = 455
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ IL+ +D+ D+R + + L GY V NG +A +R+ L+L DI MP++
Sbjct: 1 MSATHILVVDDEPDIRGLVKEILEDEGYAVAVAENGEAARHALRDRRPDLILLDIWMPDI 60
Query: 60 DGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGI L + E D V+ ++G V ++ L KP + L+ + R L
Sbjct: 61 DGISLLKEWAEDDGLPCPVIMMSGHGTVETAVEATRLGAYDFLEKPLSMAKLLLTLERAL 120
Query: 119 T 119
Sbjct: 121 E 121
>gi|284031439|ref|YP_003381370.1| winged helix family two component transcriptional regulator
[Kribbella flavida DSM 17836]
gi|283810732|gb|ADB32571.1| two component transcriptional regulator, winged helix family
[Kribbella flavida DSM 17836]
Length = 236
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + R + L G+ V ++G + K RE+ + ++ D+++P + G E
Sbjct: 2 RILVVEDERRLARAIGHGLEDHGFTVELAHDGETGLWKGREQDYDAIVLDLMLPGLSGDE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ ++ +T L KPF + L+ +N LL
Sbjct: 62 VCRQLRAAGCWTPILILTARVGAEAEAGGLNLGADDYLRKPFSYQVLIARLNALLRR 118
>gi|307153375|ref|YP_003888759.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7822]
gi|306983603|gb|ADN15484.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7822]
Length = 381
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD +++ L K+L ++ Y+V+ +NG +K + +L++ D +MP +D
Sbjct: 1 MAQ-ILIIDDDLAIQKLLSKSLMRSQYQVIVASNGNEGLEKALQYCPALIICDWLMPGLD 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ R+ + +T ++ L KP + +L V L
Sbjct: 60 GLEVCRQIKATPKLSTTFFILLTAQGSLNDRIMGLDAGADDFLCKPIEINELQARVRAGL 119
Query: 119 TI 120
+
Sbjct: 120 RL 121
>gi|160885182|ref|ZP_02066185.1| hypothetical protein BACOVA_03180 [Bacteroides ovatus ATCC 8483]
gi|237714857|ref|ZP_04545338.1| two-component system response regulator [Bacteroides sp. D1]
gi|237719989|ref|ZP_04550470.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|260174166|ref|ZP_05760578.1| two-component system response regulator [Bacteroides sp. D2]
gi|262406873|ref|ZP_06083422.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|294647160|ref|ZP_06724759.1| response regulator receiver domain protein [Bacteroides ovatus SD
CC 2a]
gi|294809229|ref|ZP_06767945.1| response regulator receiver domain protein [Bacteroides
xylanisolvens SD CC 1b]
gi|299147869|ref|ZP_07040932.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
gi|315922431|ref|ZP_07918671.1| two-component system response regulator [Bacteroides sp. D2]
gi|156109532|gb|EDO11277.1| hypothetical protein BACOVA_03180 [Bacteroides ovatus ATCC 8483]
gi|229445182|gb|EEO50973.1| two-component system response regulator [Bacteroides sp. D1]
gi|229450541|gb|EEO56332.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|262355576|gb|EEZ04667.1| phosphate regulon transcriptional regulatory protein PhoB
[Bacteroides sp. 2_1_22]
gi|292637447|gb|EFF55866.1| response regulator receiver domain protein [Bacteroides ovatus SD
CC 2a]
gi|294443623|gb|EFG12374.1| response regulator receiver domain protein [Bacteroides
xylanisolvens SD CC 1b]
gi|295084746|emb|CBK66269.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Bacteroides
xylanisolvens XB1A]
gi|298514052|gb|EFI37938.1| DNA-binding response regulator RprY [Bacteroides sp. 3_1_23]
gi|313696306|gb|EFS33141.1| two-component system response regulator [Bacteroides sp. D2]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQDVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|73855984|gb|AAZ88691.1| putative 2-component transcriptional regulator [Shigella sonnei
Ss046]
Length = 280
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 59 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 118
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 119 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 176
>gi|41407100|ref|NP_959936.1| hypothetical protein MAP1002c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254774011|ref|ZP_05215527.1| hypothetical protein MaviaA2_04954 [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395451|gb|AAS03319.1| hypothetical protein MAP_1002c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 257
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+ V +NG A K +L+ DI++P++DG+
Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMAKFDRAAPDVLVLDIMLPDVDGLR 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D +F+T +V ++KPF L +LV + LL
Sbjct: 93 ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 149
>gi|330961218|gb|EGH61478.1| sigma-54 dependent transcriptional regulator/response regulator
FleR [Pseudomonas syringae pv. maculicola str. ES4326]
Length = 468
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 40/117 (34%), Positives = 57/117 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ K+LL EDD +R L + L AGY + + A +PFSL+++D+ MP MD
Sbjct: 1 MSIKVLLVEDDRSLREALGETLELAGYGYQAVGSAEEALVAADAQPFSLVISDVNMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G +L P L V+ +T AV D+ A L KPF + L+ V R
Sbjct: 61 GHQLLSLLRSRHPQLPVLLMTAHGAVERAVDAMRQGAADYLVKPFEPKALIALVARH 117
>gi|322805225|emb|CBZ02789.1| two-component system response regulator QseB [Clostridium botulinum
H04402 065]
Length = 223
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYKEYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|320527553|ref|ZP_08028733.1| putative subtilin biosynthesis regulatory protein SpaR
[Solobacterium moorei F0204]
gi|320132110|gb|EFW24660.1| putative subtilin biosynthesis regulatory protein SpaR
[Solobacterium moorei F0204]
Length = 230
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ L L + GY+V++ +NGA + ++ L++ DI+MPEMD
Sbjct: 1 MS-KILIIDDEKELVALLQDELTERGYQVLAAHNGADGVT-LSKKQPDLIVLDIMMPEMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++F++ A + + +SKPF LR+L+ ++ L
Sbjct: 59 GFEVCRKIRDE-VLCPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|295101813|emb|CBK99358.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii L2-6]
Length = 236
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L GY+ ++ +NG +A ++L D+ +P++
Sbjct: 1 MNKPTILVVEDDVPVRCLITTTLKTHGYKYLTASNGETAIMMTTSHNPDIMLLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DGIE+ R +L ++ ++ + + ++ L+KPF + +L+ +
Sbjct: 61 DGIEVIRSVR-TWSNLPIIVLSARSEDSDKIEALDNGADDYLTKPFSVDELLARLR 115
>gi|254518330|ref|ZP_05130386.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226912079|gb|EEH97280.1| two component transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +RR + L + GYEV +G A + ++ L++ DI+MP++ G EL
Sbjct: 4 ILIVEDDKSLRRLMEVFLKQNGYEVYLAEDGEKAIEIFEDKHIDLVICDIMMPKVSGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +L ++ +T + + KP L +++ +N LL
Sbjct: 64 VKDLRNSNYELPILMVTAKETIEDKRKGFLVGADDYMVKPIDLDEMLLRINALLRR 119
>gi|160884891|ref|ZP_02065894.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
gi|156109926|gb|EDO11671.1| hypothetical protein BACOVA_02881 [Bacteroides ovatus ATCC 8483]
Length = 1317
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L Y + +G A ++ ++++DIVMP MDG+ L
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ I+ A+V ++ + KPFH R +++ + LL+ +
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187
>gi|75675380|ref|YP_317801.1| two component transcriptional regulatory protein [Nitrobacter
winogradskyi Nb-255]
gi|74420250|gb|ABA04449.1| two component transcriptional regulator, winged helix family
[Nitrobacter winogradskyi Nb-255]
Length = 223
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G A+ EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALTDAGYVVDRAFDGEEAHFLGDSEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLEAWRRGGRTMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEILARMRALLRR 118
>gi|38505865|ref|NP_942483.1| two-component response regulator [Synechocystis sp. PCC 6803]
gi|38423889|dbj|BAD02097.1| two-component response regulator [Synechocystis sp. PCC 6803]
Length = 232
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ L KAL + Y V +G A+ + + ++L + D ++P + G
Sbjct: 2 RLLLVEDEPDLGMVLEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL ++ L ++ +T +A + L KPF + +L+ + L +
Sbjct: 62 LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRS-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|125973324|ref|YP_001037234.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
ATCC 27405]
gi|256005431|ref|ZP_05430394.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|125713549|gb|ABN52041.1| PAS/PAC sensor hybrid histidine kinase [Clostridium thermocellum
ATCC 27405]
gi|255990571|gb|EEU00690.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
2360]
gi|316940443|gb|ADU74477.1| multi-sensor hybrid histidine kinase [Clostridium thermocellum DSM
1313]
Length = 902
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILLAEDD ++ + L K + NG A E F L+L D+ MPEMDGIE
Sbjct: 667 ILLAEDDKVNQQVIAGMLKKEQCSLTIAENGFEAIKLFEENEFDLILMDVQMPEMDGIEA 726
Query: 65 ARRATEL----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R ++ + ++ +T FA +SKPF D+ +NR+L
Sbjct: 727 TKRIRKMEEGTFRHIPIIAVTAFAFENDREKILEAGMDDYISKPFSFDDIYAAINRVL 784
>gi|325291487|ref|YP_004277351.1| two component response regulator [Agrobacterium sp. H13-3]
gi|325059340|gb|ADY63031.1| two component response regulator [Agrobacterium sp. H13-3]
Length = 249
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I L +DD ++ + AL GY V + +GASA D + P L + DI MP MDG+
Sbjct: 9 QTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRMDGM 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + D+ V+F+T ++KPF R LV V +L
Sbjct: 69 ELLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 125
>gi|325264313|ref|ZP_08131044.1| DNA-binding response regulator [Clostridium sp. D5]
gi|324030384|gb|EGB91668.1| DNA-binding response regulator [Clostridium sp. D5]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L + GY V+ +GA A + E LL+ D++MP +DGI
Sbjct: 4 ILVCDDDKEIVEAIEIYLSQEGYHVLKAYDGAEALKMLESEDVHLLVLDVMMPRLDGIRA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + A ++KPF+ +LV V L
Sbjct: 64 TLKIRENNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 118
>gi|310821327|ref|YP_003953685.1| sigma-54 dependent DNA-binding response regulator [Stigmatella
aurantiaca DW4/3-1]
gi|309394399|gb|ADO71858.1| Sigma-54 dependent DNA-binding response regulator [Stigmatella
aurantiaca DW4/3-1]
Length = 478
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ ++R+ L L + GY+V NG + + +++TD+VMP++
Sbjct: 1 MT-KVLVLDDEANLRKVLAAMLRREGYDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVG 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ R +PD+ V+ IT V ++ ++KPF +L + +
Sbjct: 60 GMEVLRSVNAANPDVPVIIITAHGTVDSAVEAIKAGAFDYITKPFEQSELSAVIAKA 116
>gi|304408471|ref|ZP_07390115.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342556|gb|EFM08406.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 49/115 (42%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD +R+ + + GY V +G A K+ L++ D++MP MDG L
Sbjct: 5 LVVDDDGAIRKLVRHFMETEGYIVEEAVDGLDAIRKLETFKADLVILDVMMPNMDGYRLC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ +T + + KPF +LV V LL
Sbjct: 65 QELRDYYADMPLLMLTAKGETSQKIKGFDLGTDDYVVKPFIPEELVARVKALLKR 119
>gi|260778106|ref|ZP_05886999.1| response regulator receiver domain protein (CheY-like) [Vibrio
coralliilyticus ATCC BAA-450]
gi|260606119|gb|EEX32404.1| response regulator receiver domain protein (CheY-like) [Vibrio
coralliilyticus ATCC BAA-450]
Length = 225
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ LL EDD D+ + + G+E NGA+ + + ++LTDI MP+MD
Sbjct: 1 MSINALLIEDDRDLAEAISDYMELDGFEFDFAYNGAAGLNLALTNQYDIILTDINMPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + E V+ +T + A + L KPF + +L + L+
Sbjct: 61 GIDVCQSLREQGVSTPVLMLTARDTLDDKVTGFAAGSDDYLVKPFAMEELKIRLQALIRR 120
>gi|255036502|ref|YP_003087123.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254949258|gb|ACT93958.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 228
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + + + + L +E +G + E+ F L+L D+ +P M G
Sbjct: 2 KKILIVEDDRRIAQNIFRGLAAENFEAEIAYDGITGKQMALEKKFDLVLLDVNLPGMKGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ P L ++ +T F + + + KPF R+L+ + L + +
Sbjct: 62 DVCQQLRVYKPSLPIIMLTAFGEIEDKVEGLNSGADDYIVKPFDFRELLARIYAALRVSD 121
>gi|225028064|ref|ZP_03717256.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
gi|224954612|gb|EEG35821.1| hypothetical protein EUBHAL_02333 [Eubacterium hallii DSM 3353]
Length = 236
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N IL+ +DD ++ + L GY+V+ ++G ++E P +L+ DI+MP +D
Sbjct: 4 NASILVVDDDKEIADLVEIYLVNDGYQVLKASDGEQCLQTLKEHPEVRMLILDIMMPGID 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ ++ A L+KPFH +L+ V +
Sbjct: 64 GLEVCREIRK-TSNIPILILSAKAEDMDKIVGFGTGADDYLTKPFHPLELLARVKSQMKR 122
>gi|33861262|ref|NP_892823.1| two-component response regulator, phosphate [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33639994|emb|CAE19164.1| two-component response regulator, phosphate [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 242
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMD 60
KILL EDD +R + ++L G+EV + +G+SA D + E F L+L D+++P ++
Sbjct: 13 KILLIEDDKSIRLTVTESLISEGFEVSNFKDGSSALDFILGEGIKDFDLILLDLMLPGLN 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R+ + ++ ++ + L+KPF + +L+ LL
Sbjct: 73 GLELCRKIRNEELYTPILILSAKGNESDRVLGLEVGADDYLTKPFGISELIARCRALLRR 132
>gi|90426403|ref|YP_534773.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90108417|gb|ABD90454.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 221
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + L + L AGY V + +G A+ + E ++ ++ D+ +P MDG+
Sbjct: 2 RVLVVEDDRRIAADLERGLQAAGYVVETVRDGEEAWFRGDTEDYAAIVLDLGLPGMDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D V+ +T + A D L KPF + +L+ + ++
Sbjct: 62 VLKRWRGNDRRTPVLILTARGSWAERVDGIDAGADDYLPKPFRMEELLARLRSIVRR 118
>gi|325105208|ref|YP_004274862.1| histidine kinase [Pedobacter saltans DSM 12145]
gi|324974056|gb|ADY53040.1| histidine kinase [Pedobacter saltans DSM 12145]
Length = 1365
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
NQ +L+ ED+ D+++F+ K + Y+V + +NG +A + +E P L+++DI MP MDG
Sbjct: 1114 NQTLLIVEDNIDLQQFIEKIFNRR-YKVFTASNGKTALEITKENPIDLIISDIQMPSMDG 1172
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + L + V+ +T + + ++KPF+ L V+ LL
Sbjct: 1173 FELCKNIKNNLLTSHIPVILLTAKTSTIHQEEGYYTGADAYITKPFNANILELRVSNLLE 1232
Query: 120 IK 121
+
Sbjct: 1233 TR 1234
>gi|294505928|ref|YP_003569986.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one co [Salinibacter ruber M8]
gi|294342256|emb|CBH23034.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one co [Salinibacter ruber M8]
Length = 1392
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ MR +L + L + V + +G + V++E L+L+D++MP ++G E
Sbjct: 1143 TVLVVEDNAGMRAYLREQLSGR-WTVRTAADGEEGWAAVQDEAPDLVLSDVMMPTVNGTE 1201
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + E V+ +T A + ++KPF +L + L +
Sbjct: 1202 LCEQIKSAEALRHTPVLLLTARAGTDAEVEGLKTGADDYVTKPFDAEELRQRIANHLAAR 1261
Query: 122 N 122
+
Sbjct: 1262 D 1262
>gi|262118598|pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
gi|262118599|pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
gi|262118600|pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
gi|262118601|pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++K+LL +D +R+ + L K GYEV+ NG A +K+ E L++ I+MP MD
Sbjct: 1 MSKKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+ +T + + KV+ KPF + EV LL
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|251791713|ref|YP_003006434.1| nitrogen regulation protein NR(I) [Dickeya zeae Ech1591]
gi|247540334|gb|ACT08955.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Dickeya zeae Ech1591]
Length = 470
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|217966935|ref|YP_002352441.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
gi|217336034|gb|ACK41827.1| two component transcriptional regulator, winged helix family
[Dictyoglomus turgidum DSM 6724]
Length = 224
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61
KIL+ ED+ + L K L K GY V +G A + E + L++ DI++P++DG
Sbjct: 2 KILIIEDEKKLGTALKKGLEKEGYVVDLAFDGEEAKYIIENNFEGYDLVILDIMLPKIDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I L + + ++ +T V L KPF +L+ + LL
Sbjct: 62 ISLCKDLRAKNFQAPILMLTAKDKVEDKILGLESGADDYLVKPFSYEELLARIRALLRR 120
>gi|251798934|ref|YP_003013665.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247546560|gb|ACT03579.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 230
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ + + AL + G+ V + +G A +KV +++ D++MP+M+G E
Sbjct: 3 KVLVVDDEVSISSAIAYALQREGFTVETAGDGMEALEKVAAFKPDVMVLDVMMPKMNGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E +M +T + ++KPF +R++V V L +
Sbjct: 63 VCRKL-EAGNKPAIMLLTVKNDIVDKVLGLELGADDYMTKPFDIREVVARVKALHRRR 119
>gi|164687352|ref|ZP_02211380.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
16795]
gi|164603776|gb|EDQ97241.1| hypothetical protein CLOBAR_00993 [Clostridium bartlettii DSM
16795]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L L GY+V +G Y K +E L+L D ++P + GI
Sbjct: 2 KKILIIDDEIHIVELLKFNLENNGYKVDYSYDGFDGYLKTKEFQPDLILLDWMLPNISGI 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L ++ E + V+ +T + ++KPF +++++ + +L
Sbjct: 62 DLLKKIRSDETLEQIPVIMLTAKNMEEDKLEGLEDGADDYITKPFSVKEVLARITSVLRR 121
>gi|56461534|ref|YP_156815.1| response regulator [Idiomarina loihiensis L2TR]
gi|56180544|gb|AAV83266.1| Response regulator (CheY,wHTH domains) [Idiomarina loihiensis L2TR]
Length = 226
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD +M L + + ++ +G + DK + L+L D+++P +D
Sbjct: 1 MRHSVLLIDDDTEMSVMLTELFKRESVDLSVAEDGVTGLDKALNGDYELILLDVMLPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L +R + D V+ +T L KPF+ R+L+ V LL
Sbjct: 61 GMQLLQRLRQQHRDTAVLMLTARGDDDDRVMGLELGADDYLPKPFNPRELIARVRALLRR 120
>gi|325126518|gb|ADY85848.1| Two-component response regulator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 228
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ NG A ++ P +L++ D++MP M GI
Sbjct: 2 KILVVDDDHEIVELLSIYLKNEGYEPIAAYNGKEALTRLSTTPDIALMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 DVVKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|315648396|ref|ZP_07901495.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315276090|gb|EFU39436.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 231
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ + + AL + GY V + +G A ++V +++ D++MP +
Sbjct: 1 MT-KVLVVDDEVSISSAVAYALRREGYTVETAGDGQEALERVESFHPDVMVLDVMMPRLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E ++ +T + ++KPF +R+++ V L+
Sbjct: 60 GYDVCRKL-ENRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKA-LSR 117
Query: 121 KN 122
++
Sbjct: 118 RS 119
>gi|225028586|ref|ZP_03717778.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
gi|224954068|gb|EEG35277.1| hypothetical protein EUBHAL_02865 [Eubacterium hallii DSM 3353]
Length = 233
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 1 MNQKI-LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ + L+ EDD +R ++ L Y+ ++ NGASA + ++L D+ +P+M
Sbjct: 1 MNKTVVLVVEDDRPIRNLIVTTLKMHDYKYLTAKNGASAIMEASSHHPDIVLLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+G+++ ++ ++ ++ I+ + + ++ ++KPF + +L+ +
Sbjct: 61 EGVDVIKKIR-TWSNMPIIVISARSEDSDKIEALDSGADDYITKPFSVEELLARIR 115
>gi|167766709|ref|ZP_02438762.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
gi|167711463|gb|EDS22042.1| hypothetical protein CLOSS21_01215 [Clostridium sp. SS2/1]
Length = 240
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ KIL+ +DD ++ + K L YE+++ +G A D + E+ LL+ D++MP+M
Sbjct: 6 MNQPKILVVDDDKEIVGAIKKRLEMEDYEIITAYDGLEAMDILMEQEVQLLIIDVMMPKM 65
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ + E ++ ++ ++ + + +SKPF +LV V L
Sbjct: 66 DGLSATMKIRE-SKNIPIIILSAKTEESDKILGLSMGADDYISKPFRPDELVARVKSQLR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|167756098|ref|ZP_02428225.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
gi|167704090|gb|EDS18669.1| hypothetical protein CLORAM_01618 [Clostridium ramosum DSM 1402]
Length = 250
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MNQ IL+ ED+ ++ + + L GY V NNG + + V L + DI+MP M
Sbjct: 15 MNQDNILVVEDEIEIAKAIEIYLKSQGYNVYIANNGKAGLEMVERYDIHLAIVDIMMPVM 74
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGIE+ + E D ++F++ + ++KPF +L+ V+ L
Sbjct: 75 DGIEMTMKIRENY-DFPIIFLSAKSEDIDKITGLNIGGDDYVTKPFVPMELLARVSSQLR 133
Query: 120 IKN 122
+
Sbjct: 134 RYH 136
>gi|163792858|ref|ZP_02186834.1| diguanylate cyclase [alpha proteobacterium BAL199]
gi|159181504|gb|EDP66016.1| diguanylate cyclase [alpha proteobacterium BAL199]
Length = 377
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + L L ++V++ +NG A + E ++L D++MP MD
Sbjct: 1 MPGRVLVVDDILPNVKLLEAKLSSEYFDVLTASNGPEALAVIERENPDIVLLDVMMPVMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR L V+ +T + VA L+KP L LL
Sbjct: 61 GFEVCRRIKADPRTTHLPVVMVTALSDVADRVRGIEAGADDFLTKPVVDSALFARFRSLL 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 75.9 bits (187), Expect = 2e-12, Method: Composition-based stats.
Identities = 17/113 (15%), Positives = 43/113 (38%), Gaps = 2/113 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ +I++L EV +G + ++ + L++ + + + D
Sbjct: 154 SARLLIIEDNAIDAFNMIESLSVDNGEVKRVASGRAGFEAATRQDPDLVICSLNLEDDDA 213
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
+ L + E L ++ + + L KP +L+
Sbjct: 214 LRLLSQFRANEATRHLPILMVGEEDQTDKLAKALDLGANDYLMKPVDRNELLA 266
>gi|117619500|ref|YP_858484.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560907|gb|ABK37855.1| transcriptional regulatory protein ZraR [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 426
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +DD + + + L GYEV + ++ A D++R++ L+L+D+ M MD
Sbjct: 1 MS-RILLVDDDASLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R L V+ +T + + L+KP +L + L++
Sbjct: 60 GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119
>gi|146298307|ref|YP_001192898.1| two component transcriptional regulator [Flavobacterium johnsoniae
UW101]
gi|146152725|gb|ABQ03579.1| two component transcriptional regulator, winged helix family
[Flavobacterium johnsoniae UW101]
Length = 227
Score = 140 bits (354), Expect = 7e-32, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + KILL +D+ D+ + L + GY++V+ +NG A K ++E L++ D++M
Sbjct: 1 MKKTQTKILLVDDEPDILEIVGYNLAQEGYQIVTASNGKDAIAKAQKELPELIIMDVMMA 60
Query: 58 EMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
EMDG+E ++ ++ + F+T + ++KP + LV++V
Sbjct: 61 EMDGMEACEHIRKIPELNNVIITFLTARSEDYSQVAGFDAGADDYITKPIKPKLLVSKVK 120
Query: 116 RLLTI 120
LL
Sbjct: 121 ALLRR 125
>gi|332708874|ref|ZP_08428845.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
majuscula 3L]
gi|332352416|gb|EGJ31985.1| serine phosphatase RsbU, regulator of sigma subunit [Lyngbya
majuscula 3L]
Length = 381
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MNQ IL+ +DD M+ L +AL GYEV +NG +V + +L++ D +MP M+
Sbjct: 1 MNQ-ILIIDDDPAMQMLLKRALCHQGYEVAVASNGEEGLVQVEKLRPALVICDWIMPGMN 59
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R+ + +T ++ + L KP + +L V L
Sbjct: 60 GLDVCRQLKVTPGLSTTIFILVTSRNSIEDRVEGLDAGADDFLCKPIEIAELNARVRAGL 119
Query: 119 TI 120
+
Sbjct: 120 RL 121
>gi|332295042|ref|YP_004436965.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
gi|332178145|gb|AEE13834.1| two component transcriptional regulator, winged helix family
[Thermodesulfobium narugense DSM 14796]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL EDD D+ + L G+EV+ + + A+D E SL++ D+++P+M
Sbjct: 1 MNNTILLVEDDIDISNNIKTFLSLNGFEVIQAFSASDAFDVFDEAKVSLIILDLMLPDMF 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + ++ ++ ++ L+KPF +++L+ + L+
Sbjct: 61 GSEILKVLRARGLEIPILVLSALTEEHNKVSLLDLGADDYLTKPFGMKELLARIRSLIRR 120
Query: 121 KN 122
KN
Sbjct: 121 KN 122
>gi|298479994|ref|ZP_06998193.1| response regulator receiver domain-containing protein [Bacteroides
sp. D22]
gi|298273803|gb|EFI15365.1| response regulator receiver domain-containing protein [Bacteroides
sp. D22]
Length = 1335
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++D R+F++ L + V G A + + SL+++D+ MP M+G+EL
Sbjct: 1091 LIVEDNEDFRQFIVDCLKDR-FTVYEAEQGEKAMEILALHDISLVISDVRMPIMNGLELC 1149
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + V+ +T A + ++KPF+L L+ + +LL
Sbjct: 1150 NKIKGDFRYSHIPVILLTARTAQEHMLEGLREGADDYITKPFNLDILLLRIQKLLE 1205
>gi|296445086|ref|ZP_06887047.1| two component transcriptional regulator, winged helix family
[Methylosinus trichosporium OB3b]
gi|296257507|gb|EFH04573.1| two component transcriptional regulator, winged helix family
[Methylosinus trichosporium OB3b]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD ++ + AL GY V + +GA+A D +R P L + DI MP MDG+E
Sbjct: 3 TIALVDDDRNILTSVSIALEGEGYRVQTYTDGAAALDGLRANPPDLAIFDIKMPRMDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L RR + DL V+F+T + KPF R LV V +L N
Sbjct: 63 LLRRLRQK-SDLPVIFLTSKDEEIDELFGLKMGADDFIHKPFSQRLLVERVKAILRRAN 120
>gi|291519045|emb|CBK74266.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61
+KIL+ +D++ +R + K GYEV +G A KV+E + +++ D++MPE+DG
Sbjct: 2 KKILVVDDEEKIRSIIRKYGEFEGYEVSEACDGMDAIQKVKENSDYDVIIMDVMMPELDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ D+ V+ ++ + KPF ++L+ VN
Sbjct: 62 FSACSEIKKI-KDIPVIMLSARGEEYDRIHGFEAGVDDYVVKPFSPKELMMRVN 114
>gi|239905424|ref|YP_002952163.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239795288|dbj|BAH74277.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 904
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF------SLLLTDIVMPE 58
+L+ EDDD R + L K G+ V + NG A D + + L+L DI MP
Sbjct: 769 VLVVEDDDMNRMAAQRMLVKLGFTVHTACNGQEALDFLAGQTPQAQPSVDLILMDIQMPV 828
Query: 59 MDGIELARRATEL-----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
MDG+E RR E DP ++ +T +A L+KP + ++++
Sbjct: 829 MDGLEATRRIRENADGRFDPLTPIIALTAYAMAGDRERFLQAGLDDHLAKPVKVAEMLDA 888
Query: 114 VNRLLTIK 121
+ R L +
Sbjct: 889 MKRALDRR 896
>gi|212691048|ref|ZP_03299176.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
gi|212666280|gb|EEB26852.1| hypothetical protein BACDOR_00538 [Bacteroides dorei DSM 17855]
Length = 1350
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ EDD+D+RR++ + L Y + NG A + + + L+++D++MPEMDG
Sbjct: 1089 KYKVLVVEDDEDIRRYICRELAS-DYHTLESCNGKEALESIFNKTPDLVISDVMMPEMDG 1147
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L + + + V+ +T N + ++KPFH+ L L+
Sbjct: 1148 LTLCHKIKQNVNLNHIPVILLTAKTREEDNLEGLETGADAYMTKPFHMEILRKTAANLIR 1207
Query: 120 IK 121
+
Sbjct: 1208 SR 1209
>gi|312959727|ref|ZP_07774244.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
gi|311286444|gb|EFQ65008.1| two component transcriptional regulator, winged helix family
[Pseudomonas fluorescens WH6]
Length = 234
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ G + LL+ D+ +P+
Sbjct: 4 MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGNEGLAQAALNKPDLLVLDLGLPD 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + V+ ++ A+ ++ ++KPF +++ + V LL
Sbjct: 64 MDGQQVLREFRE-WSTVPVLVLSVRASEGQKVEALDGGANDYVTKPFGIQEFLARVRALL 122
Query: 119 T 119
Sbjct: 123 R 123
>gi|307592131|ref|YP_003899722.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
gi|306985776|gb|ADN17656.1| response regulator receiver protein [Cyanothece sp. PCC 7822]
Length = 209
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D D R + L GY V NG A + P L+L DI MP+++G E
Sbjct: 14 KILVVDDTIDSLRLMANMLTDQGYNVRKVLNGQMALTAAQSAPPDLILLDINMPQLNGYE 73
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + ++ V+FI+ V + + ++KPF+ +LV V L ++
Sbjct: 74 VCQQLKNNPITAEIPVIFISALDEVLDKVKAFSVGAVDYITKPFYFEELVTRVETQLKLR 133
>gi|298483616|ref|ZP_07001791.1| DNA-binding response regulator RprY [Bacteroides sp. D22]
gi|298270186|gb|EFI11772.1| DNA-binding response regulator RprY [Bacteroides sp. D22]
Length = 233
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQDVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|294646909|ref|ZP_06724530.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
gi|292637854|gb|EFF56251.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CC 2a]
Length = 1347
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1095 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1153
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1154 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1213
Query: 121 K 121
+
Sbjct: 1214 Q 1214
>gi|293368832|ref|ZP_06615436.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|292636137|gb|EFF54625.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
Length = 233
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQDVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|325679778|ref|ZP_08159352.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
gi|324108593|gb|EGC02835.1| putative sensory transduction protein RegX3 [Ruminococcus albus 8]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D+ ++ + + L GY+ + + AY + ++ + L+L DI +P+ G
Sbjct: 3 KKRILIVDDEQELSGIIAEMLAGCGYDTDTAADSEHAYSLLGQKNYHLILLDINLPDGTG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ E + V+F + A +S L KP+ +++L++ VN L+
Sbjct: 63 FEICRQLREA-SHVPVIFASARTAEDDRINSFDIGGDDYLQKPYSMKELLSRVNALMRR 120
>gi|283835613|ref|ZP_06355354.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
29220]
gi|291068825|gb|EFE06934.1| DNA-binding response regulator TctD [Citrobacter youngae ATCC
29220]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L+KPF + +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRR 118
>gi|323528206|ref|YP_004230358.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323385208|gb|ADX57298.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ ++ L + V S +G A + + + +++ D+ +P MDG E
Sbjct: 2 KLLLVEDNTELAHWIANLLRLENFAVDSVPDGECADVVLTTQRYDVVVLDLRLPRMDGRE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ V+ +T + D + + KPF R+LV + L+ ++
Sbjct: 62 VLARLRRRGDNVPVIMLTAHGSTDDKVDCFSTGADDYVVKPFDARELVARIKALIRRQS 120
>gi|256060055|ref|ZP_05450237.1| Transcriptional regulatory protein chvI [Brucella neotomae 5K33]
gi|261324031|ref|ZP_05963228.1| regulatory protein BvrR [Brucella neotomae 5K33]
gi|261300011|gb|EEY03508.1| regulatory protein BvrR [Brucella neotomae 5K33]
Length = 239
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 41/119 (34%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL RR + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|239930282|ref|ZP_04687235.1| two component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 256
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+++ S +G A RE ++ D+++P+MDG+
Sbjct: 32 RVLVVDDEQSITELLSMALRYEGWQIHSEGDGQGALRAARELRPDAVVLDMMLPDMDGLS 91
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R PD+ V+F+T +V ++KPF L ++V + L+
Sbjct: 92 VLGRLRRELPDVPVLFLTAKGSVEERVAGLTAGGDDYVTKPFGLEEVVARLRGLIRR 148
>gi|227821352|ref|YP_002825322.1| two-component response regulator protein [Sinorhizobium fredii
NGR234]
gi|227340351|gb|ACP24569.1| two-component response regulator protein [Sinorhizobium fredii
NGR234]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L +AL +AGY V +G + EP+ ++ DI +PEMDGI
Sbjct: 2 RILIIEDDVNLNRQLAEALKEAGYVVDQAYDGEEGHYLGDAEPYDAIILDIGLPEMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + ++KPFH+++++ + L+
Sbjct: 62 ALERWRADGKTMPVLILTARDRWSDKVAGIDAGADDYVAKPFHVQEVLARIRALIRR 118
>gi|226953156|ref|ZP_03823620.1| response regulator [Acinetobacter sp. ATCC 27244]
gi|226836086|gb|EEH68469.1| response regulator [Acinetobacter sp. ATCC 27244]
Length = 243
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|224543644|ref|ZP_03684183.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
15897]
gi|224523417|gb|EEF92522.1| hypothetical protein CATMIT_02854 [Catenibacterium mitsuokai DSM
15897]
Length = 225
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 59/120 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++I + EDD++++ + +L +GY++ NN A + E+ L + D+++PE+D
Sbjct: 1 MSERIYVIEDDENIQEIIKLSLESSGYQITLFNNAIDAIVAIHEDTPDLAIFDVMLPELD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI ++ + + L ++ ++ ++KPF + +L V LL
Sbjct: 61 GISAIKQIRKTNTTLPILILSAKDREIDKVRGLDSGCDDYMTKPFGVLELAARVRSLLRR 120
>gi|188996079|ref|YP_001930330.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
gi|188931146|gb|ACD65776.1| two component transcriptional regulator, winged helix family
[Sulfurihydrogenibium sp. YO3AOP1]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD ++ + + K L + GY+VV + + E F +++ D+++P+M G
Sbjct: 2 KVLIVEDDKNLSKLIAKRLKEEGYDVVQAYDAEEGLNYANYENFDIIILDLMLPKMSGFY 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +V + L+KPF +L+ + L+
Sbjct: 62 IIESLRNKKIKTPILVLSAKDSVEDKVKGLSLGADDYLTKPFSFPELLARIQALVRR 118
>gi|170694195|ref|ZP_02885350.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170140935|gb|EDT09108.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 220
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD+ + + + L AG V ++G A + + L++ D+ +P++ G E
Sbjct: 2 RVLLVEDDELIGSGVEEGLRDAGLTVDWAHDGREAMLALTTTEYELVVLDLGLPKLSGTE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L D V+ +T VA L KPF L +L+ LL +
Sbjct: 62 LLDWLRGRRDDTPVLVMTARDTVADRVGGLTAGADDYLGKPFDLSELIARCRALLRRAH 120
>gi|168178301|ref|ZP_02612965.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226948175|ref|YP_002803266.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|182671135|gb|EDT83109.1| DNA-binding response regulator [Clostridium botulinum NCTC 2916]
gi|226842363|gb|ACO85029.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|167765067|ref|ZP_02437180.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
gi|167696695|gb|EDS13274.1| hypothetical protein BACSTE_03453 [Bacteroides stercoris ATCC 43183]
Length = 1350
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ ED+D++R +L + L Y V C+NG SA V+E L+++DI+MPEM G
Sbjct: 1089 QKILIVEDNDELREYLRRTL-AENYHVQVCSNGKSALCIVKEYFPDLIISDIMMPEMRGD 1147
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + V+ +T D + + KPF++ L + LL
Sbjct: 1148 ELCQKVKNDIDTSHIPVILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1207
Query: 121 K 121
+
Sbjct: 1208 R 1208
>gi|119490895|ref|ZP_01623178.1| Response regulator receiver (CheY) modulated Serine phosphatase
[Lyngbya sp. PCC 8106]
gi|119453713|gb|EAW34872.1| Response regulator receiver (CheY) modulated Serine phosphatase
[Lyngbya sp. PCC 8106]
Length = 379
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD +R L + L K GY+V +NG +K + +L++ D +MP + GIE
Sbjct: 3 KILVIDDDTVIRELLRRTLKKQGYDVSVASNGEEGIEKAKVLRPALIICDWIMPRLTGIE 62
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + +T +++ +SKP + +L V L +
Sbjct: 63 VCRQVKDNPELSTTQFFLLTSLGSISDRVKGLDAGADDFISKPLEMNELYARVRAGLRL 121
>gi|156740851|ref|YP_001430980.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus castenholzii DSM 13941]
gi|156232179|gb|ABU56962.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus castenholzii DSM 13941]
Length = 508
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + F + L G+ V + NG A D ++ PF L+LTD+ MPEM G+
Sbjct: 13 RVLIVEDDPMVSSFCARLLHMKGFAVKTACNGREALDILQTHPFDLVLTDLQMPEMGGMA 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E DL + T +A V ++ L+KPF + +L V R + +
Sbjct: 73 LLRELREHYADLDAIMFTAYATVDTAREALKLGAFDYLTKPFSVDELERTVRRAVEWR 130
>gi|99082727|ref|YP_614881.1| response regulator receiver modulated serine phosphatase [Ruegeria
sp. TM1040]
gi|99039007|gb|ABF65619.1| Phosphoserine phosphatase rsbU [Ruegeria sp. TM1040]
Length = 423
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D RR L+ +L K G++VV +G A D R +P L+L+D +MP M+GI
Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMMPGMNGI 78
Query: 63 ELARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRL 117
E R + + +T + + L+KP +L + R+
Sbjct: 79 EFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERI 138
Query: 118 LTIK 121
L ++
Sbjct: 139 LRMQ 142
>gi|254239280|ref|ZP_04932603.1| two-component response regulator [Pseudomonas aeruginosa C3719]
gi|126171211|gb|EAZ56722.1| two-component response regulator [Pseudomonas aeruginosa C3719]
Length = 239
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD + L + L +G+EV C +G R + L+L DI++P DG+E
Sbjct: 10 RLLAIEDDPTLGAHLFQHLNGSGFEVTWCRDGEEGLAAARSGAYDLILMDIMLPGRDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ ++ A + L KPF L +L ++ +L
Sbjct: 70 ILRQLRQEQA-LPVILMSALGAEQDRIAGFSQGADDYLPKPFSLAELRVRIDAILRR 125
>gi|118577252|ref|YP_899492.1| two component, sigma54 specific, Fis family transcriptional
regulator [Pelobacter propionicus DSM 2379]
gi|118504757|gb|ABL01239.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter propionicus DSM 2379]
Length = 451
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD +RR L L + YEV + ++G + +L++TD+ M MD
Sbjct: 1 MKAKILIIDDDTSLRRVLEYNLQEEDYEVHAASSGEEGLYLFGQFRPNLVITDMKMSGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + + E P+ V+ IT F V + ++ ++KPF+ L V + L
Sbjct: 61 GLMVLKSIKERSPETLVIIITAFGTVDVAVEAMKTGAYDYITKPFNRDALKLTVKKAL 118
>gi|253580967|ref|ZP_04858229.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847809|gb|EES75777.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 247
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D+ + L + GY V+ +G A + +R +P LL+ DI+MP++DGI
Sbjct: 20 ILVCDDDKDIVEAIGIYLEQEGYTVIKAYDGVEAINVLRSQPVDLLIIDIMMPKLDGIRT 79
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E +P L ++ ++ + A ++KPF+ +LV V L
Sbjct: 80 TLKIREENP-LPIIILSAKSEDADKILGLNVGADDYVTKPFNPLELVARVKSQLRR 134
>gi|289424225|ref|ZP_06426008.1| response regulator receiver domain protein [Propionibacterium acnes
SK187]
gi|289428903|ref|ZP_06430583.1| response regulator receiver domain protein [Propionibacterium acnes
J165]
gi|295129921|ref|YP_003580584.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
transduction protein regX3 [Propionibacterium acnes
SK137]
gi|289154922|gb|EFD03604.1| response regulator receiver domain protein [Propionibacterium acnes
SK187]
gi|289157904|gb|EFD06127.1| response regulator receiver domain protein [Propionibacterium acnes
J165]
gi|291375523|gb|ADD99377.1| Phosphate regulon transcriptional regulatory protein PhoB; Sensory
transduction protein regX3 [Propionibacterium acnes
SK137]
gi|313765549|gb|EFS36913.1| response regulator receiver domain protein [Propionibacterium acnes
HL013PA1]
gi|313772902|gb|EFS38868.1| response regulator receiver domain protein [Propionibacterium acnes
HL074PA1]
gi|313793076|gb|EFS41143.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA1]
gi|313802476|gb|EFS43698.1| response regulator receiver domain protein [Propionibacterium acnes
HL110PA2]
gi|313806491|gb|EFS44998.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA2]
gi|313811042|gb|EFS48756.1| response regulator receiver domain protein [Propionibacterium acnes
HL083PA1]
gi|313814457|gb|EFS52171.1| response regulator receiver domain protein [Propionibacterium acnes
HL025PA1]
gi|313815050|gb|EFS52764.1| response regulator receiver domain protein [Propionibacterium acnes
HL059PA1]
gi|313817360|gb|EFS55074.1| response regulator receiver domain protein [Propionibacterium acnes
HL046PA2]
gi|313821896|gb|EFS59610.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA1]
gi|313824208|gb|EFS61922.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA2]
gi|313826576|gb|EFS64290.1| response regulator receiver domain protein [Propionibacterium acnes
HL063PA1]
gi|313828760|gb|EFS66474.1| response regulator receiver domain protein [Propionibacterium acnes
HL063PA2]
gi|313831805|gb|EFS69519.1| response regulator receiver domain protein [Propionibacterium acnes
HL007PA1]
gi|313834651|gb|EFS72365.1| response regulator receiver domain protein [Propionibacterium acnes
HL056PA1]
gi|313840118|gb|EFS77832.1| response regulator receiver domain protein [Propionibacterium acnes
HL086PA1]
gi|314915811|gb|EFS79642.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA4]
gi|314917083|gb|EFS80914.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA1]
gi|314921359|gb|EFS85190.1| response regulator receiver domain protein [Propionibacterium acnes
HL050PA3]
gi|314926710|gb|EFS90541.1| response regulator receiver domain protein [Propionibacterium acnes
HL036PA3]
gi|314931318|gb|EFS95149.1| response regulator receiver domain protein [Propionibacterium acnes
HL067PA1]
gi|314954858|gb|EFS99264.1| response regulator receiver domain protein [Propionibacterium acnes
HL027PA1]
gi|314958794|gb|EFT02896.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA1]
gi|314961083|gb|EFT05184.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA2]
gi|314964489|gb|EFT08589.1| response regulator receiver domain protein [Propionibacterium acnes
HL082PA1]
gi|314969588|gb|EFT13686.1| response regulator receiver domain protein [Propionibacterium acnes
HL037PA1]
gi|314974654|gb|EFT18749.1| response regulator receiver domain protein [Propionibacterium acnes
HL053PA1]
gi|314977150|gb|EFT21245.1| response regulator receiver domain protein [Propionibacterium acnes
HL045PA1]
gi|314980434|gb|EFT24528.1| response regulator receiver domain protein [Propionibacterium acnes
HL072PA2]
gi|314985752|gb|EFT29844.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA1]
gi|314987275|gb|EFT31366.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA2]
gi|314989181|gb|EFT33272.1| response regulator receiver domain protein [Propionibacterium acnes
HL005PA3]
gi|315078496|gb|EFT50527.1| response regulator receiver domain protein [Propionibacterium acnes
HL053PA2]
gi|315082041|gb|EFT54017.1| response regulator receiver domain protein [Propionibacterium acnes
HL078PA1]
gi|315082819|gb|EFT54795.1| response regulator receiver domain protein [Propionibacterium acnes
HL027PA2]
gi|315086175|gb|EFT58151.1| response regulator receiver domain protein [Propionibacterium acnes
HL002PA3]
gi|315087760|gb|EFT59736.1| response regulator receiver domain protein [Propionibacterium acnes
HL072PA1]
gi|315097486|gb|EFT69462.1| response regulator receiver domain protein [Propionibacterium acnes
HL038PA1]
gi|315099937|gb|EFT71913.1| response regulator receiver domain protein [Propionibacterium acnes
HL059PA2]
gi|315101750|gb|EFT73726.1| response regulator receiver domain protein [Propionibacterium acnes
HL046PA1]
gi|315110294|gb|EFT82270.1| response regulator receiver domain protein [Propionibacterium acnes
HL030PA2]
gi|327331428|gb|EGE73167.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
HL096PA2]
gi|327333415|gb|EGE75135.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
HL096PA3]
gi|327334938|gb|EGE76649.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
HL097PA1]
gi|327445567|gb|EGE92221.1| response regulator receiver domain protein [Propionibacterium acnes
HL013PA2]
gi|327447187|gb|EGE93841.1| response regulator receiver domain protein [Propionibacterium acnes
HL043PA1]
gi|327449779|gb|EGE96433.1| response regulator receiver domain protein [Propionibacterium acnes
HL043PA2]
gi|327454628|gb|EGF01283.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA3]
gi|327456700|gb|EGF03355.1| response regulator receiver domain protein [Propionibacterium acnes
HL083PA2]
gi|327457024|gb|EGF03679.1| response regulator receiver domain protein [Propionibacterium acnes
HL092PA1]
gi|328755683|gb|EGF69299.1| response regulator receiver domain protein [Propionibacterium acnes
HL087PA1]
gi|328756463|gb|EGF70079.1| response regulator receiver domain protein [Propionibacterium acnes
HL025PA2]
gi|328758807|gb|EGF72423.1| response regulator receiver domain protein [Propionibacterium acnes
HL020PA1]
gi|328761843|gb|EGF75355.1| DNA-binding response regulator RegX3 [Propionibacterium acnes
HL099PA1]
gi|332674761|gb|AEE71577.1| sensory transduction protein RegX [Propionibacterium acnes 266]
Length = 226
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ R L K G+EV + NGA + ++L D++MP +
Sbjct: 1 MT-RVLIIEDEESYREATAFMLRKEGFEVNTAANGADGLEIYSHNGADIVLLDLMMPGLP 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++ ++ +T + ++KPF R+LV + +
Sbjct: 60 GTEVCRQLRQRG-NVGIIMVTARDSEIDKVVGLELGADDYVTKPFSHRELVARIRAVTRR 118
>gi|210622339|ref|ZP_03293108.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
gi|210154327|gb|EEA85333.1| hypothetical protein CLOHIR_01056 [Clostridium hiranonis DSM 13275]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++K+L+ +D+ + L L +GY+ + +G + K +EE L+L D ++P + G
Sbjct: 5 SEKVLIIDDEMHIVELLRFNLETSGYKTIYSYDGFDGFIKAKEEKPDLILLDWMLPNISG 64
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ ++ + + V+ +T + ++KPF +++L+ + ++
Sbjct: 65 IEVLKKIRQDADLKKIPVIMLTAKNMEDDKVEGLEVGADDYITKPFSIKELLARITSVMR 124
Query: 120 I 120
Sbjct: 125 R 125
>gi|189464649|ref|ZP_03013434.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
17393]
gi|189436923|gb|EDV05908.1| hypothetical protein BACINT_00992 [Bacteroides intestinalis DSM
17393]
Length = 1344
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ D+R ++ + YEV++ +G ++ + +++++DI+MP MDG+EL
Sbjct: 1094 VLVVEDNSDIREYIKSSFADI-YEVITAKDGQEGWELTQARIPNVIVSDIMMPIMDGVEL 1152
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ E + V+ +T ++ + A L+KPF + L + +N LL +
Sbjct: 1153 CKKVKEDMRTSHIPVILLTAKDSLHDKEEGYASGADAYLTKPFSAKLLHSCINNLLETR 1211
>gi|209544121|ref|YP_002276350.1| winged helix family two component transcriptional regulator
[Gluconacetobacter diazotrophicus PAl 5]
gi|209531798|gb|ACI51735.1| two component transcriptional regulator, winged helix family
[Gluconacetobacter diazotrophicus PAl 5]
Length = 236
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
I L +DD ++ + L G+ V + +G SA + P L + DI MP MDG
Sbjct: 5 KHTIALVDDDRNILTSVQMTLEAEGFNVRTYTDGESALHGLMTRPVDLAVLDIKMPRMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL +R L V+F++ ++KPF R L+ + LL
Sbjct: 65 MELLQRLR-TRSHLPVIFLSSKDEEVDQLMGLRLGADDYITKPFSQRLLLERIRALLRR 122
>gi|167465417|ref|ZP_02330506.1| two-component response regulator [Paenibacillus larvae subsp.
larvae BRL-230010]
gi|322383772|ref|ZP_08057523.1| two-component response regulator YkoH-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321151984|gb|EFX44927.1| two-component response regulator YkoH-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 229
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD+ + L + L GY V N+G+ + E L++ D++MP +D
Sbjct: 1 MREKILVVDDDEKITSMLRRGLAFEGYTVEVANDGSQGLRLMMEYDPQLMILDVMMPHVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G E+ RR E D+ ++ +T ++ L KPF L +
Sbjct: 61 GWEVCRRVREGGSDVPILMLTAKDEISDRVKGLDIGADDYLVKPFALEE 109
>gi|78048520|ref|YP_364695.1| putative two-component system regulatory protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|289668239|ref|ZP_06489314.1| putative two-component system regulatory protein [Xanthomonas
campestris pv. musacearum NCPPB4381]
gi|294625107|ref|ZP_06703752.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665487|ref|ZP_06730771.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325926516|ref|ZP_08187833.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|78036950|emb|CAJ24648.1| putative two-component system regulatory protein [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|292600571|gb|EFF44663.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604741|gb|EFF48108.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325543088|gb|EGD14534.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
Length = 229
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 1 MTGKKVLLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 61 SGIEVLSTIRRAG-DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|328951840|ref|YP_004369174.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
gi|328452164|gb|AEB07993.1| adenylate/guanylate cyclase [Desulfobacca acetoxidans DSM 11109]
Length = 357
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ R L + L K G++ NG A + E+ F L+L DI MPEM+G ++
Sbjct: 17 ILVVDDNRMNRLMLARGLEKQGHQAAFAENGRQALAMLAEQDFDLILLDIEMPEMNGYQV 76
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
DL V+ I+ + L+KPF+ L V+ L K
Sbjct: 77 LDHLAANVRWRDLPVIMISAVDEIDSVVRCIELGAEDYLTKPFNPVLLKARVDASLEKK 135
>gi|317506815|ref|ZP_07964589.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316254889|gb|EFV14185.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 52/105 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R L ++L GY V + NG A ++ E+ ++ D++MP +DG+E+
Sbjct: 3 ILVVDDDRAVRDSLRRSLSFNGYSVRTAENGIEALSQILEDRPDAMVLDVMMPGLDGLEV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
RR DL ++ +T V+ L KPF L +
Sbjct: 63 CRRLRGSGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEE 107
>gi|237722086|ref|ZP_04552567.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 2_2_4]
gi|229448955|gb|EEO54746.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 2_2_4]
Length = 1317
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L Y + +G A ++ ++++DIVMP MDG+ L
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ I+ A+V ++ + KPFH R +++ + LL+ +
Sbjct: 1129 INKLKSELKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187
>gi|229589199|ref|YP_002871318.1| two-component system response regulator [Pseudomonas fluorescens
SBW25]
gi|229361065|emb|CAY47928.1| two-component system, response regulator [Pseudomonas fluorescens
SBW25]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ G + LL+ D+ +P+
Sbjct: 4 MSQTATILVIDDEPQIRKFLRISLASQGYKVIEAGTGTEGLAQAALSKPDLLVLDLGLPD 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + V+ ++ A+ ++ ++KPF +++ + V LL
Sbjct: 64 MDGQQVLREFRE-WSTVPVLVLSVRASEGQKVEALDSGANDYVTKPFGIQEFLARVRALL 122
Query: 119 T 119
Sbjct: 123 R 123
>gi|229513612|ref|ZP_04403076.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae TMA 21]
gi|229349489|gb|EEO14445.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae TMA 21]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|108757141|ref|YP_631748.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
gi|108461021|gb|ABF86206.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
Length = 474
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R+ L L + G++V NG + + +++TD+VMP++ G+E
Sbjct: 3 KVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ +PD+ V+ IT V D+ ++KPF +L + V +
Sbjct: 63 VLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKA 116
>gi|86605728|ref|YP_474491.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
gi|86554270|gb|ABC99228.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab]
Length = 249
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61
+ +L+ +D+D +R + AL + GY+V+ +G A + V E L++ D+++P ++G
Sbjct: 24 ETLLVVDDEDAIRETVAVALEEQGYQVLQAADGRQALELVHTAERLDLMILDLMLPGLNG 83
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++L R + ++ +T ++ L+KPF +R+L+ +L +
Sbjct: 84 LDLCRLLRREGNTIPILMLTAKSSETDRVVGLELGADDYLTKPFGMRELIARCRSVLRRR 143
>gi|116691688|ref|YP_837221.1| two component transcriptional regulator [Burkholderia cenocepacia
HI2424]
gi|116649688|gb|ABK10328.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia HI2424]
Length = 221
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A +R E F L++ D +P MDG
Sbjct: 2 RILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|51594428|ref|YP_068619.1| DNA-binding transcriptional regulator CpxR [Yersinia
pseudotuberculosis IP 32953]
gi|108809460|ref|YP_653376.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
Antiqua]
gi|108813937|ref|YP_649704.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
Nepal516]
gi|145601072|ref|YP_001165148.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis
Pestoides F]
gi|150260864|ref|ZP_01917592.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis CA88-4125]
gi|153948260|ref|YP_001399085.1| CpxR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|162420224|ref|YP_001604719.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis Angola]
gi|165926059|ref|ZP_02221891.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936215|ref|ZP_02224784.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011510|ref|ZP_02232408.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213694|ref|ZP_02239729.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398994|ref|ZP_02304518.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418962|ref|ZP_02310715.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426656|ref|ZP_02318409.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468392|ref|ZP_02333096.1| transcriptional regulatory protein CpxR [Yersinia pestis FV-1]
gi|170026339|ref|YP_001722844.1| DNA-binding transcriptional regulator CpxR [Yersinia
pseudotuberculosis YPIII]
gi|186893415|ref|YP_001870527.1| DNA-binding transcriptional regulator CpxR [Yersinia
pseudotuberculosis PB1/+]
gi|218927293|ref|YP_002345168.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis CO92]
gi|229836187|ref|ZP_04456355.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis Pestoides A]
gi|229839923|ref|ZP_04460082.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842005|ref|ZP_04462160.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis biovar Orientalis str. India
195]
gi|229904466|ref|ZP_04519577.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis Nepal516]
gi|270488465|ref|ZP_06205539.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294502177|ref|YP_003566239.1| two component system response regulatory protein [Yersinia pestis
Z176003]
gi|27544276|dbj|BAC54911.1| transcription factor [Yersinia pseudotuberculosis]
gi|51587710|emb|CAH19310.1| two component system response regulatory protein [Yersinia
pseudotuberculosis IP 32953]
gi|108777585|gb|ABG20104.1| two component system response regulatory protein [Yersinia pestis
Nepal516]
gi|108781373|gb|ABG15431.1| two component system response regulatory protein [Yersinia pestis
Antiqua]
gi|115345904|emb|CAL18763.1| two component system response regulatory protein [Yersinia pestis
CO92]
gi|145212768|gb|ABP42175.1| two component system response regulatory protein [Yersinia pestis
Pestoides F]
gi|149290272|gb|EDM40349.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis CA88-4125]
gi|152959755|gb|ABS47216.1| transcriptional regulatory protein CpxR [Yersinia
pseudotuberculosis IP 31758]
gi|162353039|gb|ABX86987.1| transcriptional regulatory protein CpxR [Yersinia pestis Angola]
gi|165915829|gb|EDR34437.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921919|gb|EDR39096.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989656|gb|EDR41957.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205096|gb|EDR49576.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962956|gb|EDR58977.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051498|gb|EDR62906.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054345|gb|EDR64162.1| transcriptional regulatory protein CpxR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752873|gb|ACA70391.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186696441|gb|ACC87070.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229678584|gb|EEO74689.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis Nepal516]
gi|229690315|gb|EEO82369.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis biovar Orientalis str. India
195]
gi|229696289|gb|EEO86336.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229706635|gb|EEO92641.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis Pestoides A]
gi|262360256|gb|ACY56977.1| two component system response regulatory protein [Yersinia pestis
D106004]
gi|262364203|gb|ACY60760.1| two component system response regulatory protein [Yersinia pestis
D182038]
gi|270336969|gb|EFA47746.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294352636|gb|ADE62977.1| two component system response regulatory protein [Yersinia pestis
Z176003]
gi|320013426|gb|ADV96997.1| DNA-binding response regulator in two-component regulatory system
with CpxA [Yersinia pestis biovar Medievalis str. Harbin
35]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A ++ LLL +MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDI-MMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|315605390|ref|ZP_07880433.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312959|gb|EFU61033.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Actinomyces sp. oral taxon 180 str. F0310]
Length = 250
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ + L L + G+ V + +G ++++DI+MP MDG E+
Sbjct: 21 VLLVDDEAAIIDGLAPFLRRCGFTVHTARDGEEGLAAHGRLEPDIVVSDIMMPHMDGREM 80
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+ +T + LSKPF ++LV+ + +L
Sbjct: 81 VRRIRAGGTWTPVILLTQIDTSFERSAALDEGADDYLSKPFDPQELVSRIRAVLRR 136
>gi|325108974|ref|YP_004270042.1| transcriptional regulator [Planctomyces brasiliensis DSM 5305]
gi|324969242|gb|ADY60020.1| two component transcriptional regulator, winged helix family
[Planctomyces brasiliensis DSM 5305]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/123 (21%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+Q+ IL+ ED+ + L+ L K G++V++ +G + + L++ D+++P
Sbjct: 1 MSQQSILVIEDERSILDALVYNLQKDGFDVITATDGQDGLRRAQASLPDLIVLDLMLPVT 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R+ ++++ +T + + ++KPF ++ L++ V L
Sbjct: 61 DGLEVCRQLRADPRTKHIRILMLTAKSEEVDEIVGFSMGADDYVTKPFKVKPLISRVKAL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|239906625|ref|YP_002953366.1| putative NtrC family two-component response regulator
[Desulfovibrio magneticus RS-1]
gi|239796491|dbj|BAH75480.1| putative NtrC family two-component response regulator
[Desulfovibrio magneticus RS-1]
Length = 460
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 56/112 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +DD + L L AGY+VV NG A + + +P L+++D+ MP MDG+
Sbjct: 10 KTILVVDDDPHILEVLEVRLVSAGYDVVPAANGLEALEVLSRQPVRLVISDMRMPGMDGM 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+ L ++F+T ++ ++ L+KPF ++L+ V
Sbjct: 70 RMLEEMERRGIKLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLARV 121
>gi|284036763|ref|YP_003386693.1| transcriptional regulator [Spirosoma linguale DSM 74]
gi|283816056|gb|ADB37894.1| two component transcriptional regulator, winged helix family
[Spirosoma linguale DSM 74]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 51/120 (42%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + + + ++L GY +G + + L++ DI +P++ G
Sbjct: 2 RRILIIEDDRRIAQNISRSLRVLGYSTEVAYDGFTGRALGLTGQYELIILDINLPDISGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ R P L ++ +T + + + KPF LR+L V +
Sbjct: 62 EICRNIRADHPTLPIIMLTAMGEIEDKIEGLECGADDYIVKPFDLRELSARVATCFRRSD 121
>gi|237718881|ref|ZP_04549362.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|229451659|gb|EEO57450.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1331
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ ED+D +R L+ Y V++ NG +K E ++++DI+MPEM G
Sbjct: 1082 KYKILIVEDNDSLREMLVNIFKSL-YTVITAVNGKEGLEKTCSEMPHIVISDIIMPEMSG 1140
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + + V+ +T A+ N + ++KPF++ L++ N L+
Sbjct: 1141 TELCLAIKQNFDTCHIPVVLLTAKTAIEHNLEGLKMGADDYITKPFNINILLSRCNNLVN 1200
Query: 120 IK 121
+
Sbjct: 1201 NR 1202
>gi|197122714|ref|YP_002134665.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. K]
gi|196172563|gb|ACG73536.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. K]
Length = 434
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ D R L + L YEV S ++G A D R E L+L DI MP +DG E+
Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + D+ V+F++G A+ S L KPF R+L V R L +
Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 248
>gi|170748891|ref|YP_001755151.1| two component transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170655413|gb|ACB24468.1| two component transcriptional regulator, winged helix family
[Methylobacterium radiotolerans JCM 2831]
Length = 251
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ + + L V +G + E L++ D+++P DG+
Sbjct: 20 HILVVEDDREISALIARYLRGNDCRVTLAGDGTDMDRVLAEARIDLIVLDLMLPGEDGLS 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +R + ++ +T + L+KPF+ R+L+ + +L
Sbjct: 80 LCKRLRG-TSQIPILILTAKSEDVDRILGLELGADDYLAKPFNPRELLARIRAILRR 135
>gi|148378896|ref|YP_001253437.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
3502]
gi|153931468|ref|YP_001383278.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|153936439|ref|YP_001386827.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
gi|148288380|emb|CAL82457.1| two component response regulator [Clostridium botulinum A str. ATCC
3502]
gi|152927512|gb|ABS33012.1| DNA-binding response regulator [Clostridium botulinum A str. ATCC
19397]
gi|152932353|gb|ABS37852.1| DNA-binding response regulator [Clostridium botulinum A str. Hall]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGHSALDVLYKEYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|254249049|ref|ZP_04942369.1| Response regulator [Burkholderia cenocepacia PC184]
gi|124875550|gb|EAY65540.1| Response regulator [Burkholderia cenocepacia PC184]
Length = 221
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A +R E F L++ D +P MDG
Sbjct: 2 RILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|150017636|ref|YP_001309890.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
8052]
gi|149904101|gb|ABR34934.1| response regulator receiver protein [Clostridium beijerinckii NCIMB
8052]
Length = 156
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ ED+D +R ++ L + GY+V+ +G A + + L++ DIV+P++D
Sbjct: 1 MN-KILVVEDEDILREVIVDYLIEDGYQVLEAADGEKALELFQSNSVELVILDIVLPKID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G + RR + + + ++ +T + + L KP+ R L+ +V R L
Sbjct: 60 GWSVCRRIRK-NSSIPIIMLTARSDEDDSLMGYELGADDYLIKPYSPRILMVKVKRFLE 117
>gi|116617476|ref|YP_817847.1| DNA-binding response regulator [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|227432676|ref|ZP_03914649.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
gi|116096323|gb|ABJ61474.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Leuconostoc mesenteroides subsp. mesenteroides ATCC
8293]
gi|227351558|gb|EEJ41811.1| response regulator [Leuconostoc mesenteroides subsp. cremoris ATCC
19254]
Length = 230
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE + ++G A K+ P +L++ D++MP M+G+
Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMADDGKEALSKLNTNPDIALMILDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 DVVKTVRK-DSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|329934372|ref|ZP_08284451.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329305968|gb|EGG49823.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 230
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDD +RR + L + G+E + G + + P L+L D+++P M
Sbjct: 1 MT-RVLLIEDDPAVRRGVTLGLRRRGHETEAVATGEDGLEALAASPPDLVLLDLMLPGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR E + V+ ++ + KP + + ++
Sbjct: 60 GLEVCRRIRE-TSQVPVVILSARGDDIDVVVGLEAGADDYIVKPSSDEVIEARMRAVMRR 118
>gi|329922247|ref|ZP_08277949.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328942284|gb|EGG38554.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1049
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L GY +V+ A + + + L+++D++MP+M G E
Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVAVTRAEEALQLLEQGEWDLIISDVMMPQMSGYE 779
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+R + +L ++ +T L KP +L V LL +K
Sbjct: 780 LSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLELK 839
Query: 122 N 122
+
Sbjct: 840 H 840
>gi|325922587|ref|ZP_08184341.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
gi|325546937|gb|EGD18037.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
Length = 242
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 11 VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKSIAQRRPDLIVLDVMMPGEDGLSA 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 71 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 126
>gi|302557635|ref|ZP_07309977.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
gi|302475253|gb|EFL38346.1| DNA-binding response regulator TrcR [Streptomyces griseoflavus
Tu4000]
Length = 271
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + G+E V+ N G A + E +++ D+++P++DG
Sbjct: 47 RLLVVDDDPPIADLVATVARYEGWEAVTANTGEDALRRAAEFRPDIVVLDLMLPDVDGFG 106
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+F+T VA L KPF + +L+ + +L
Sbjct: 107 VLDRLRRSGTMVPVVFLTARDGVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRR 163
>gi|224823772|ref|ZP_03696881.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
gi|224604227|gb|EEG10401.1| two component transcriptional regulator, winged helix family
[Lutiella nitroferrum 2002]
Length = 228
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL +DD ++ L LG+ G+ V +G S + +++++ D++MP ++
Sbjct: 1 MT-HVLLVDDDIELSAMLADYLGQEGFRVSRAADGESGLREALSGRYAIVVLDVMMPRLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR + + V+ +T ++KP +R LV + LL
Sbjct: 60 GIEVLRRLRQ-HSQVPVLMLTARGDDIDCIMGLELGADDYVTKPCAMRTLVARLKALLRR 118
>gi|209517560|ref|ZP_03266399.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209501973|gb|EEA01990.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L ED+ +RRF+ AL G V G + L++ D+ +P+ DG
Sbjct: 5 SITVVLIEDEKQIRRFVRTALEAEGITVYDAETGKQGLVEAATRKPDLVIVDLGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ R +L V+ ++ + + L+KPF + +L+ + L +
Sbjct: 65 LDVIRELRG-WSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRR 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|167580382|ref|ZP_02373256.1| DNA-binding response regulator KdpE [Burkholderia thailandensis
TXDOH]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 1 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 61 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 119
Query: 118 LTIKN 122
L +N
Sbjct: 120 LRRRN 124
>gi|153816384|ref|ZP_01969052.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
gi|145846272|gb|EDK23190.1| hypothetical protein RUMTOR_02636 [Ruminococcus torques ATCC 27756]
Length = 240
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +++ +D+ ++ + + L GY V+ +G A + + + P L+L D++MP ++
Sbjct: 8 MGEVVMVVDDNKEIVYSISELLKYEGYRVIPAYDGMEALNLLEQNPVDLILLDVMMPRLN 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + E + V+ ++ + + KP++ +L+ V L
Sbjct: 68 GLSALMKLREKYR-IPVIILSAKTEESDKVSGLVLGADDYVEKPYNPAELMARVKAHLRR 126
>gi|27381762|ref|NP_773291.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
gi|27354931|dbj|BAC51916.1| two-component response regulator [Bradyrhizobium japonicum USDA
110]
Length = 256
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ EDD + R + K L V + ++G + + L++ D+++P DG
Sbjct: 5 NPNILVVEDDRETRTLIAKYLRNNACNVTAVSDGREMSRAMADHRVDLIILDVMLPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L R+ ++ +T L+KPF+ R+L+ +N +L
Sbjct: 65 LSLCRKVRSE-AQTPIIMLTARGEDVDRIVGLEMGADDYLTKPFNPRELLARINAVL 120
>gi|325284496|ref|YP_004257035.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
gi|324316670|gb|ADY27781.1| two component transcriptional regulator, winged helix family
[Deinococcus proteolyticus MRP]
Length = 221
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + L L G+ V+ +G SA +++ L + D ++P + G++L
Sbjct: 4 ILIVDDDPAILEILRAYLKAEGHTVLEACDGYSAREQLP--RADLAILDWMLPGVSGVDL 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR A L ++ +T + KPF R++V V LL
Sbjct: 62 AREARASGLTLPILMLTARGEEEDKLRGLDFGVDDYVVKPFSPREVVARVRALLRR 117
>gi|319640073|ref|ZP_07994800.1| sensor protein [Bacteroides sp. 3_1_40A]
gi|317388351|gb|EFV69203.1| sensor protein [Bacteroides sp. 3_1_40A]
Length = 1294
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+++M FL +L Y +++ +G A +K++E +L+++D +MP MDG+E
Sbjct: 1046 LIVDDNEEMLNFLSSSLADK-YSILTAEDGIEALNKLKENEVTLIVSDWMMPRMDGVEFC 1104
Query: 66 RRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + +T + + KPF ++ L + L+ ++N
Sbjct: 1105 KAIRTNQATSHIPFILLTAKTDTNSKIEGMDCGADAYIEKPFSMQYLEACIKNLVDLRN 1163
>gi|310642323|ref|YP_003947081.1| two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
gi|309247273|gb|ADO56840.1| Two component transcriptional regulator, winged helix family
[Paenibacillus polymyxa SC2]
Length = 226
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGIELARR 67
ED++ +R F++ L + G+EV+ + G A + + + L D+++P MDG E+ RR
Sbjct: 2 EDEESIRSFIVINLKRNGFEVLEASEGHEALNILNTVRDIDIALLDVMVPGMDGFEVCRR 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + ++F+T + + +SKPF +L+ + LL N
Sbjct: 62 IRETNERIGIIFLTAKVQEQDKVYALSVGADDHVSKPFSPTELIARIQSLLRRVN 116
>gi|71906343|ref|YP_283930.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Dechloromonas aromatica RCB]
gi|71845964|gb|AAZ45460.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Dechloromonas aromatica RCB]
Length = 226
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L L + G+E + ++G S + ++++ D++MP + GIE
Sbjct: 3 HILLVDDDVELSGMLRDYLNQDGFEATAVHDGESGVVEALSGHYAIVALDVMMPGISGIE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ V+ +T + KP R+L + +L
Sbjct: 63 VLRRIRAV-SNVPVLMLTAKGDDMDRIVGLELGADDYVPKPCQPRELAARLRAILRR 118
>gi|330820701|ref|YP_004349563.1| two component transcriptional regulator, winged helix family
[Burkholderia gladioli BSR3]
gi|327372696|gb|AEA64051.1| two component transcriptional regulator, winged helix family
[Burkholderia gladioli BSR3]
Length = 248
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R + + L K V NG + L++ D++MP DG+
Sbjct: 8 HVLIVDDDRGIRELVGQYLEKNSIRVSLAANGREMRATLEYGAPDLIVLDVMMPGDDGLV 67
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T L+KPF +R+L + +L
Sbjct: 68 LCRELRAGKFRSVPVVMLTARDEETDRIVGLEMGADDYLTKPFAVRELYARIRAVLRR 125
>gi|260914398|ref|ZP_05920867.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
gi|260631499|gb|EEX49681.1| two component response regulator [Pasteurella dagmatis ATCC 43325]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + L L K+G+ V +G + + V P+ ++ D+ +P+MDG+E
Sbjct: 2 RILLIEDDSLIGNGLQIGLTKSGFTVDWFQDGRTGLEAVNSAPYDAVVLDLTLPKMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + D+ V+ +T + L KPF L ++V + L+ +
Sbjct: 62 ILQTWRKEKCDVPVLILTARDTLDERVTGLQRGADDYLCKPFALAEVVARLQALIRRR 119
>gi|326203229|ref|ZP_08193094.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325986487|gb|EGD47318.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 223
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + K G+EVV +G A RE F +++ D++MPE+DG
Sbjct: 3 KILIVDDEAGIRDIIKKYAVFEGHEVVEAADGMEAIQVCREMEFDIIVMDVMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ ++ + KPF ++L+ VN ++ +
Sbjct: 63 ACKEIRK-FCMTPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRVNAIVKRSS 120
>gi|237729610|ref|ZP_04560091.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
gi|226908216|gb|EEH94134.1| tricarboxylic transport regulatory protein [Citrobacter sp. 30_2]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L+KPF + +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLAKPFEIEELDARLRALLRR 118
>gi|212697044|ref|ZP_03305172.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
7454]
gi|212675819|gb|EEB35426.1| hypothetical protein ANHYDRO_01609 [Anaerococcus hydrogenalis DSM
7454]
Length = 224
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + K+L K+GYEV S +G A + + E + L++ D+ +P MDG+E
Sbjct: 2 KILIVEDEQILNDTINKSLKKSGYEVESAFDGIDAMEMIEIESYDLIILDLNLPHMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + KV+ ++ + + + L KPFHL +L V LT +N
Sbjct: 62 ILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRS-LTRRN 119
>gi|126649411|ref|ZP_01721652.1| two-component response regulator [Bacillus sp. B14905]
gi|126593736|gb|EAZ87659.1| two-component response regulator [Bacillus sp. B14905]
Length = 227
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ DMR + L + E + +G AYD + E L+L D++MP D
Sbjct: 1 MT-TVLIVDDEQDMRNLIEMMLNNSDIETFTAASGTEAYDIIVREKIDLVLLDVMMPHED 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + ++ ++F+T A + KPF +LV + +L
Sbjct: 60 GFVVCQSIRAM-SNVPIIFLTARDANDDKVKGLTLGGDDYIVKPFTHDELVARIYAVLRR 118
>gi|119510916|ref|ZP_01630039.1| two-component response regulator [Nodularia spumigena CCY9414]
gi|119464444|gb|EAW45358.1| two-component response regulator [Nodularia spumigena CCY9414]
Length = 230
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ + + L + Y V +G A+ + + ++L + D ++P++ G
Sbjct: 2 RVLLVEDEPDLGAAIKRTLTQQKYLVDWVIDGDEAWGYLEDSWTEYTLAIFDWMLPKISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL +R + L ++ +T ++ L KPF + +L+ + L +
Sbjct: 62 LELCKRLRKHQNSLPILMLTAKDSMEDKVTGLDAGADDYLVKPFGMAELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|114562310|ref|YP_749823.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114333603|gb|ABI70985.1| two component transcriptional regulator, winged helix family
[Shewanella frigidimarina NCIMB 400]
Length = 227
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ + + L A Y V ++G + +E + + + D+ +P++DG+
Sbjct: 2 RLLLVEDDLALQANIKQHLIDAQYTVDVASDGEEGLFQAQEYQYDVAIIDVGLPKLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E D ++ +T + LSKPF L +LV +N L+
Sbjct: 62 LISKLREQDISYPIIILTARDSWQDKVVGLDAGADDYLSKPFQLEELVARINALIRR 118
>gi|325273473|ref|ZP_08139717.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324101394|gb|EGB98996.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 231
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ GA + L++ D+ +P+
Sbjct: 1 MSQPATLLVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLAQAALGKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + V+ ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSSVPVLVLSVRASELQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|317407497|gb|EFV87452.1| winged helix family Two component transcriptional regulator
[Achromobacter xylosoxidans C54]
Length = 195
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ + L + GY V +G Y E F L++ D+++P +DG +
Sbjct: 67 RVLVIEDDPDILANITHHLTRRGYIVDCAEDGLRGYAMAAEGGFDLIVLDLMLPRLDGYD 126
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E ++ +T + L KPF L +L V LL
Sbjct: 127 LCRQLRAEAGCGTPIIIVTARDTLDNRLAGFDAGADDYLVKPFALAELAARVKALLHR 184
>gi|303242250|ref|ZP_07328738.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
gi|302590238|gb|EFL59998.1| two component transcriptional regulator, winged helix family
[Acetivibrio cellulolyticus CD2]
Length = 231
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L G+ V CN G S + ++EE F LL+ DI++P +DG
Sbjct: 2 KRILIVEDDHSIGELEKDYLEINGFSVKICNEGVSGLNCIKEEEFDLLILDIMLPGIDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ +R ++ D+ ++ ++ ++KPF +LV VN ++
Sbjct: 62 EILKRVRDV-KDIPILLVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVNAHIS 117
>gi|298492712|ref|YP_003722889.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
gi|298234630|gb|ADI65766.1| response regulator receiver sensor signal transduction histidine
kinase ['Nostoc azollae' 0708]
Length = 437
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ + + L +A+ + G++ + +G SA + L+L D++MP +DG E
Sbjct: 12 VLLVDDNPNNLKVLSEAIQRCGWKALMATDGESAIRQTEYAHPDLILLDVMMPGLDGFET 71
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR L + V+F+T ++KPF +++ + L I N
Sbjct: 72 CRRLKANPLTYNTPVIFMTALCDPTDKVKGLEIGAVDYITKPFQHEEVIARLKLHLKISN 131
>gi|167836011|ref|ZP_02462894.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
thailandensis MSMB43]
Length = 232
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 1 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 61 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 119
Query: 118 LTIKN 122
L +N
Sbjct: 120 LRRRN 124
>gi|148977229|ref|ZP_01813856.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
gi|145963511|gb|EDK28774.1| transcriptional regulator CpxR [Vibrionales bacterium SWAT-3]
Length = 229
Score = 140 bits (354), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L L G+ V N+G + + + +E L+L D++MP ++G+E
Sbjct: 4 ILLIDDDTELTSLLKDILSFEGFTVSEANDGYAGLEAINDE-IDLILLDVMMPRLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKKLREHW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|330718091|ref|ZP_08312691.1| DNA-binding response regulator [Leuconostoc fallax KCTC 3537]
Length = 229
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF-SLLLTDIVMPEMDGI 62
KIL+ +DD+++ L L GYE V ++G A K+ P SL++ D++MP M+G+
Sbjct: 2 KILVVDDDNEIAELLEIYLKNEGYEPVMASDGKEALSKLNTNPDTSLMILDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 DVVKTVRK-DSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|307128785|ref|YP_003880801.1| nitrogen regulation protein NR(I) [Dickeya dadantii 3937]
gi|306526314|gb|ADM96244.1| Nitrogen regulation protein NR(I) [Dickeya dadantii 3937]
Length = 470
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +NG A + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLTCATFDNGTQALNALTTQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LQQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|295085864|emb|CBK67387.1| Signal transduction histidine kinase [Bacteroides xylanisolvens XB1A]
Length = 1317
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++R L L Y + +G A ++ ++++DIVMP MDG+ L
Sbjct: 1071 ILIVEDEKNIRDLLKDVL--FDYVIHEAKDGVEALKEIEHNHPDIIISDIVMPNMDGLSL 1128
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ I+ A+V ++ + KPFH R +++ + LL+ +
Sbjct: 1129 INKLKSDLKTSYIPIIGISAKASVEDQINAFNHGADAYIVKPFHPRQVISTIENLLSRQ 1187
>gi|294627710|ref|ZP_06706292.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664634|ref|ZP_06729971.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292598062|gb|EFF42217.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605594|gb|EFF48908.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 238
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ G + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTGEEGLALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLHEIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 126
>gi|284123129|ref|ZP_06386901.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Candidatus Poribacteria sp. WGA-A3]
gi|283829304|gb|EFC33708.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Candidatus Poribacteria sp. WGA-A3]
Length = 480
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + +L+ +D+ MR ++ AL GY V +NG K++ + L++TD+ MP D
Sbjct: 1 MTRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR---- 116
G+++ R E + +V+ IT +V + ++KPF + +L+ V+R
Sbjct: 61 GLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPFPMDELLMTVDRATKV 120
Query: 117 -LLTIKN 122
L +N
Sbjct: 121 QALRQEN 127
>gi|262273464|ref|ZP_06051278.1| copper-sensing two-component system response regulator CpxR
[Grimontia hollisae CIP 101886]
gi|262222442|gb|EEY73753.1| copper-sensing two-component system response regulator CpxR
[Grimontia hollisae CIP 101886]
Length = 240
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L L GY+V NNG DK+ ++ L+L D++MP ++G+E
Sbjct: 13 ILLIDDDTELTSLLHDLLELEGYQVEIANNGQEGLDKISDQT-DLVLLDVMMPVLNGMET 71
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ +T L KPF R+L+ + +L
Sbjct: 72 LRRLRDSW-ETPVLMLTAKGEEIDRVMGLELGADDYLPKPFSDRELLARMRAILRR 126
>gi|257414385|ref|ZP_05592023.1| DNA-binding response regulator TcrA [Roseburia intestinalis L1-82]
gi|257200234|gb|EEU98518.1| DNA-binding response regulator TcrA [Roseburia intestinalis L1-82]
Length = 132
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ ED+ M + K L AGYEV +C +G A++ V E + L++ D+ +P MDG+E+
Sbjct: 1 MIVEDEKQMCDMVAKRLYDAGYEVDTCYDGEEAFESVLTENYDLIVLDLNLPGMDGMEIL 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + KV+ ++ +A + + KPFHL++L + L K
Sbjct: 61 KELRQRNEETKVLILSARGQIADKVEGLDAGANDYMEKPFHLQELEARIRSLTRRK 116
>gi|19553859|ref|NP_601861.1| two-component system, response regulator [Corynebacterium
glutamicum ATCC 13032]
gi|62391500|ref|YP_226902.1| two component response regulator [Corynebacterium glutamicum ATCC
13032]
gi|145296659|ref|YP_001139480.1| hypothetical protein cgR_2566 [Corynebacterium glutamicum R]
gi|21325434|dbj|BAC00056.1| Two-component system, response regulators consisting of a CheY-like
receiver domain and a HTH DNA-binding domain
[Corynebacterium glutamicum ATCC 13032]
gi|41326842|emb|CAF20686.1| putative two component response regulator [Corynebacterium
glutamicum ATCC 13032]
gi|140846579|dbj|BAF55578.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 241
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ ED+ + R + L KAG++ + ++GA+A DKV +++ D+ +P +DG
Sbjct: 13 SGRVLIVEDERPLARMISLYLSKAGFDTTTIHDGAAAPDKVAHLRPDVVILDLGLPGLDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ +R D ++ +T + ++KPF++R+LV + ++
Sbjct: 73 LEVCKRIRAFT-DCYILMLTARGSERDRITGLEIGADDYITKPFNIRELVIRIQSVMRR 130
>gi|326388965|ref|ZP_08210547.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
19370]
gi|326206565|gb|EGD57400.1| osmolarity response regulator [Novosphingobium nitrogenifigens DSM
19370]
Length = 244
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD ++R L + LG+ GY V + + G + ++ +P +++ D++MP DG+
Sbjct: 10 RILVVDDDPELRALLTRFLGEHGYAVRAVDGGRAMDSALQRDPADVIVLDLMMPGEDGLA 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T L KPF R+LV ++ +L
Sbjct: 70 VLRRLRAGGDPTPVIMLTARGDAIDRVLGLEMGADDYLGKPFLPRELVARISAMLRR 126
>gi|304391092|ref|ZP_07373044.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315656132|ref|ZP_07909023.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|304325975|gb|EFL93221.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315493134|gb|EFU82734.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 246
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + + L + YE C +GA A DK RE LLL D+++P MD
Sbjct: 20 MSAKILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMD 79
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR E ++ ++ +T + + KPF ++L+ V L
Sbjct: 80 GIEICRRIRE-FSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLR 137
>gi|255305348|ref|ZP_05349520.1| two-component response regulator [Clostridium difficile ATCC 43255]
Length = 233
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
MN +L+ +DD ++ + K + + ++ + GA V + SL++ DI+MP+
Sbjct: 1 MNS-VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPD 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG ++ ++ E ++ V+ +T L+KPF + +L+ VN L+
Sbjct: 60 IDGFQVLKKIRE-TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLI 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|222148304|ref|YP_002549261.1| response regulator PleD [Agrobacterium vitis S4]
gi|221735292|gb|ACM36255.1| two component response regulator [Agrobacterium vitis S4]
Length = 457
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L +EV++ +G A D ++L D++MP +D
Sbjct: 2 MTARILVVDDVPANVKLLEARLLAEYFEVLTAEDGLKALDICDRTQVDVVLLDVMMPGID 61
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + L+KP + L++ V L+
Sbjct: 62 GFEVCERLKSSPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLISRVKSLV 121
Query: 119 TIK 121
+K
Sbjct: 122 RLK 124
Score = 66.3 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/119 (18%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL + + +IKAL +VV+ ++ +A + E F L++ + + + D + L
Sbjct: 159 VLLVDSRASSQERIIKALKPV-ADVVAMSDAQAALFEAAESNFDLVIVNGTLEDYDPLRL 217
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ LD + ++ I L + + +P +L+ L K
Sbjct: 218 CSQLRSLDRTRFIPILLIADQGEEYLIVRALDLGVNDYIVRPVDTNELLARTLTQLRRK 276
>gi|170288268|ref|YP_001738506.1| response regulator receiver protein [Thermotoga sp. RQ2]
gi|170175771|gb|ACB08823.1| response regulator receiver protein [Thermotoga sp. RQ2]
Length = 122
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILL +D +R+ + L K GYEV+ NG A +++ E L++ DI+MP MD
Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALERLSEFTPDLIVLDIMMPVMD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+ +T + + KV+ KPF + EV LL
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|152986242|ref|YP_001347715.1| putative two-component response regulator [Pseudomonas aeruginosa
PA7]
gi|150961400|gb|ABR83425.1| probable two-component response regulator [Pseudomonas aeruginosa
PA7]
Length = 228
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 57/122 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ ED+ + ++L + L ++GY V ++G + LL+ D+++P D
Sbjct: 1 MNMKLLIVEDEPRIGQYLRQGLAESGYAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+F+T AV L KPF +L+ V LL
Sbjct: 61 GWQILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRR 120
Query: 121 KN 122
N
Sbjct: 121 GN 122
>gi|90416240|ref|ZP_01224172.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [marine gamma proteobacterium HTCC2207]
gi|90331965|gb|EAS47179.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [marine gamma proteobacterium HTCC2207]
Length = 219
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD + L KAL + Y V + G A +R E + + D+ +P+MDGIE
Sbjct: 2 HILLVEDDTSLAAALCKALRQKNYAVNTVATGREALHVIRTEKPDMTILDLGLPDMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++A P+++++ +T + L+KPF + +L+ + +L +
Sbjct: 62 VLKKARHSQPEIQILILTARSGTEEKITGLDSGADDYLAKPFEVDELLARLR-VLERR 118
>gi|71279117|ref|YP_269981.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
gi|71144857|gb|AAZ25330.1| DNA-binding response regulator BaeR [Colwellia psychrerythraea 34H]
Length = 232
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ ED++ + L L KAGY+ + G V+ + F L+L D+++P D
Sbjct: 1 MS-HILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R E ++ ++ +T + KPF R++V V +L
Sbjct: 60 GLTICREIQE-FSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRR 118
>gi|15642687|ref|NP_232320.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121726722|ref|ZP_01679947.1| transcriptional regulator CpxR [Vibrio cholerae V52]
gi|147675245|ref|YP_001218180.1| transcriptional regulator CpxR [Vibrio cholerae O395]
gi|227082808|ref|YP_002811359.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
gi|229507260|ref|ZP_04396765.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae BX 330286]
gi|229509818|ref|ZP_04399299.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae B33]
gi|229516940|ref|ZP_04406386.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae RC9]
gi|229527383|ref|ZP_04416775.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae 12129(1)]
gi|229606767|ref|YP_002877415.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae MJ-1236]
gi|254851228|ref|ZP_05240578.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
gi|255744348|ref|ZP_05418300.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholera CIRS 101]
gi|262158542|ref|ZP_06029657.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae INDRE 91/1]
gi|262170064|ref|ZP_06037753.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae RC27]
gi|298500492|ref|ZP_07010296.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
gi|9657287|gb|AAF95833.1| transcriptional regulator CpxR [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121630883|gb|EAX63265.1| transcriptional regulator CpxR [Vibrio cholerae V52]
gi|146317128|gb|ABQ21667.1| transcriptional regulator CpxR [Vibrio cholerae O395]
gi|227010696|gb|ACP06908.1| transcriptional regulator CpxR [Vibrio cholerae M66-2]
gi|227014580|gb|ACP10790.1| transcriptional regulator CpxR [Vibrio cholerae O395]
gi|229335015|gb|EEO00500.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae 12129(1)]
gi|229346003|gb|EEO10975.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae RC9]
gi|229353292|gb|EEO18231.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae B33]
gi|229354765|gb|EEO19686.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae BX 330286]
gi|229369422|gb|ACQ59845.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae MJ-1236]
gi|254846933|gb|EET25347.1| transcriptional regulator CpxR [Vibrio cholerae MO10]
gi|255737873|gb|EET93266.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholera CIRS 101]
gi|262021472|gb|EEY40184.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae RC27]
gi|262029703|gb|EEY48352.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae INDRE 91/1]
gi|297540661|gb|EFH76718.1| transcriptional regulator CpxR [Vibrio cholerae MAK 757]
gi|327485164|gb|AEA79571.1| Copper-sensing two-component system response regulator CpxR [Vibrio
cholerae LMA3894-4]
Length = 228
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|330810400|ref|YP_004354862.1| Response regulator, OmpR family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327378508|gb|AEA69858.1| putative Response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 236
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +LL +DD ++ L K L + GY V +G + + V L++ D+++P +
Sbjct: 1 MS-HLLLVDDDLEVLALLRKFLEQHGYSVDVAADGTALWQAVERRVPDLIILDVMLPGDN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L +R + ++ +T ++ L+KPF R+L+ V +L
Sbjct: 60 GLVLCQRLRAEH-TVGIIMLTAMGELSDRVVGLELGADDYLTKPFDARELLARVRAVLRR 118
>gi|300714596|ref|YP_003739399.1| two-component system response regulator [Erwinia billingiae Eb661]
gi|299060432|emb|CAX57539.1| Two-component system response regulator [Erwinia billingiae Eb661]
Length = 220
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + + L K G+ V G + P+ ++ D+ +P MDG++
Sbjct: 2 RILVIEDDRLIGDGIKAGLIKMGFSVDWFTEGKEGLAALSAAPYDAVVLDLSLPGMDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + D V+ +T A+ L KPF L ++ + L+ ++
Sbjct: 62 ILRQWRQQGQDEPVLILTARDALEQRVTGLQQGADDYLCKPFALSEVAARLQALIRRRH 120
>gi|288957299|ref|YP_003447640.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288909607|dbj|BAI71096.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 237
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL +DD+ +R L L GY V + + ASA + EP L++ D+ +P+ DG+
Sbjct: 2 HILAVDDDEPIRELLASYLAGEGYRVTTAPDTASARQALDGEPVDLVVCDLRLPDGDGLG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + + V+ ++ L+KPF+ R+L+ + +L
Sbjct: 62 LVRQIR-TESQIPVIILSSKDQDVDRIVGLELGADDYLTKPFNPRELLARIKAVLRR 117
>gi|260172959|ref|ZP_05759371.1| two-component system sensor histidine kinase/response regulator,
hybrid ('one-component system') [Bacteroides sp. D2]
gi|315921239|ref|ZP_07917479.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
gi|313695114|gb|EFS31949.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D2]
Length = 1372
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+++++++++++ + +EV++ NNG + ++++DI+MP MDGI L
Sbjct: 1114 LIVEDNEEIQKYIVESFTDS-FEVITANNGEEGKQQALSRIPDIVVSDIMMPVMDGITLC 1172
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + + ++ +T ++ + L+KPF L + +N LL +
Sbjct: 1173 KQLKDDVRTSHIPIILLTAKDSLQDKEEGYEVGADSYLTKPFSASLLRSRINNLLDSR 1230
>gi|255525634|ref|ZP_05392568.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296185521|ref|ZP_06853931.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
gi|255510724|gb|EET87030.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296050355|gb|EFG89779.1| putative regulatory protein VanR [Clostridium carboxidivorans P7]
Length = 224
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + IL+ +DD D+R + L V + NG A D + L++ D++MP+M
Sbjct: 1 MEKSTILVVDDDKDIRDMINIYLVNQDMNVHTAANGIEALDILENTKVDLIVLDVMMPKM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG++ + E ++ ++ ++ A + KPF+ +L+ + L
Sbjct: 61 DGMKACMKIREKL-NVPIIILSAKIDDADKILGLTIGADDYVGKPFNPLELLARIKSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254973991|ref|ZP_05270463.1| two-component response regulator [Clostridium difficile QCD-66c26]
gi|255091378|ref|ZP_05320856.1| two-component response regulator [Clostridium difficile CIP 107932]
gi|255313038|ref|ZP_05354621.1| two-component response regulator [Clostridium difficile QCD-76w55]
gi|255515794|ref|ZP_05383470.1| two-component response regulator [Clostridium difficile QCD-97b34]
gi|255648887|ref|ZP_05395789.1| two-component response regulator [Clostridium difficile QCD-37x79]
gi|306519002|ref|ZP_07405349.1| two-component response regulator [Clostridium difficile QCD-32g58]
Length = 233
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
MN +L+ +DD ++ + K + + ++ + GA + + SL++ DI+MP+
Sbjct: 1 MNS-VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPD 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG ++ ++ E ++ V+ +T L+KPF + +L+ VN L+
Sbjct: 60 IDGFQVLKKIRE-TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLI 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|27367386|ref|NP_762913.1| response regulator [Vibrio vulnificus CMCP6]
gi|320159231|ref|YP_004191609.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
MO6-24/O]
gi|27358955|gb|AAO07903.1|AE016811_144 Response regulator [Vibrio vulnificus CMCP6]
gi|319934543|gb|ADV89406.1| DNA-binding heavy metal response regulator [Vibrio vulnificus
MO6-24/O]
Length = 231
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L K L +AGY V +G + + + L++ D+++P ++G +
Sbjct: 2 KLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D V+ +T V + KPF +L+ + +L +
Sbjct: 62 VLRALRSNQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQ 119
>gi|118579149|ref|YP_900399.1| two component sigma54 specific Fis family transcriptional regulator
[Pelobacter propionicus DSM 2379]
gi|118501859|gb|ABK98341.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pelobacter propionicus DSM 2379]
Length = 456
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ IL+ +D++D+R L L G+ V +G A + V E ++L DI MP +D
Sbjct: 1 MSKLILVVDDENDIRTSLTGILEDEGFLVSCAASGVEALENVCHEIPDIVLLDIWMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E + +L P L V+ I+G + + + KP L ++ VN L +
Sbjct: 61 GLETLEKLKQLFPHLTVIMISGHGTIETAVRATKLGAFDFIEKPLSLDKVLITVNNALRM 120
>gi|326562467|gb|EGE12785.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis 46P47B1]
gi|326564282|gb|EGE14512.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis 103P14B1]
gi|326567216|gb|EGE17336.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis 12P80B1]
gi|326568279|gb|EGE18361.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis BC8]
gi|326569979|gb|EGE20026.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis BC1]
gi|326570061|gb|EGE20107.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis BC7]
gi|326572915|gb|EGE22900.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis CO72]
gi|326573839|gb|EGE23792.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis O35E]
gi|326574741|gb|EGE24677.1| two-component system phosphate regulon response regulator PhoB
[Moraxella catarrhalis 101P30B1]
Length = 230
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EM 59
MN KIL+ ED+ + + L + ++VV + AY V +E L+L D +MP
Sbjct: 1 MNAKILVVEDEPAINELIAGTLDLSDFDVVQAYDTQGAYVAVVDEKPDLILLDWMMPHGE 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI+ ARR + D+ ++ +T ++KPF R+L++ V +
Sbjct: 61 SGIDFARRLKKNPATADIPIIMLTAKGEEDNKVYGLDAGVDDYITKPFSTRELISRVKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|290352109|dbj|BAI78765.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 134
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|159028847|emb|CAO90652.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 230
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + L +AL + Y V +G ++ + + LL+ D+ +P++ G
Sbjct: 2 RILVVEDDMQLAEILREALSERQYVVDVARDGEEGWNWLELGKYDLLVLDVTLPKLSGTL 61
Query: 64 LARRATELDPD--------LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
L +R + + V+ +T V D ++KPF L +L+ +
Sbjct: 62 LCQRLRRAESHHPVSANATVPVLLLTARDTVIDKIDGLDAGADDYVTKPFDLGELMARIR 121
Query: 116 RLLTI 120
L+
Sbjct: 122 ALIRR 126
>gi|90418941|ref|ZP_01226852.1| two-component phosphate transcriptional regulator, PhoB
[Aurantimonas manganoxydans SI85-9A1]
gi|90337021|gb|EAS50726.1| two-component phosphate transcriptional regulator, PhoB
[Aurantimonas manganoxydans SI85-9A1]
Length = 247
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I++ ED++ + L L GY V + G A +++EE LL+ D ++P +
Sbjct: 1 MSARIVVVEDEEALGILLRYNLEAEGYVVDVIDRGDEADIRLKEEVPDLLILDWMLPGLS 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL RR + L ++ +T + + + KPF +L+ V +L
Sbjct: 61 GVELCRRLRQREETERLPILMLTARGEESERVRGLSVGADDYVVKPFSTPELIARVRAML 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|88811433|ref|ZP_01126688.1| Two component transpcriptional regulator, fis family protein
[Nitrococcus mobilis Nb-231]
gi|88791322|gb|EAR22434.1| Two component transpcriptional regulator, fis family protein
[Nitrococcus mobilis Nb-231]
Length = 452
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + +IL+ +DD + R L L GYEV + +G A L++TD+ M
Sbjct: 1 MAKGYRILVVDDDPGVLRLLSIRLKSNGYEVATAQSGEEALSNFAGIRPHLVITDLRMDG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ L + + P L V+ +T ++ ++ ++KPF L+ +V L
Sbjct: 61 MDGMTLFQNLHKQHPTLPVIILTAHGSIPDAVEATQKGVFGFITKPFEAPALLQQVESAL 120
Query: 119 TI 120
+
Sbjct: 121 RL 122
>gi|330996468|ref|ZP_08320350.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
gi|329573024|gb|EGG54643.1| response regulator receiver domain protein [Paraprevotella
xylaniphila YIT 11841]
Length = 1328
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+D +R F+ + L + V + +NG A D +R+E L+++D++MPEM+G EL
Sbjct: 1056 ILIVEDEDSIRNFMKERLSPL-FIVETASNGKDALDTIRKEHIDLVISDVMMPEMNGYEL 1114
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++F+T + + KPF L ++ LL +
Sbjct: 1115 CTAIKSDINLCHIPIIFLTAKNDIDSKVKGLKVGAEAYIEKPFSYDYLKAQILSLLNNR 1173
>gi|326388569|ref|ZP_08210162.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326206820|gb|EGD57644.1| two component transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 260
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +D+ +R L L + G+ V + A A ++ + L+L DI+MP DG+ L
Sbjct: 26 ILLVDDEAALREPLADYLARQGFVVTQAASAAEARGRIASAHYDLVLLDIMMPGEDGLSL 85
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+FIT + KPF R+LV + +L
Sbjct: 86 CRHL-AETRRMPVIFITAKGESTDRIVGLEIGGDDYVVKPFDPRELVARIRSVLRR 140
>gi|323939088|gb|EGB35304.1| nitrogen regulation protein NR(I) [Escherichia coli E482]
Length = 469
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL G + NGA + + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGVGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|323493471|ref|ZP_08098593.1| response regulator [Vibrio brasiliensis LMG 20546]
gi|323312294|gb|EGA65436.1| response regulator [Vibrio brasiliensis LMG 20546]
Length = 376
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + R L L Y+V+ NG A + ++L DI+MPEMDG E+
Sbjct: 8 VLVVDDNAENRVLLSGLLKPH-YKVLVATNGKQALSLAESKLPDIILLDIMMPEMDGYEV 66
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + V+F+T + + KP L+ + L ++
Sbjct: 67 CLRLKDNSDTAFIPVIFLTAKTQIEDEQRGFEVGAVDYILKPISPPILLARIATHLKLR 125
>gi|298241030|ref|ZP_06964837.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297554084|gb|EFH87948.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 226
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ +R F + L AGY + +G +A + E L + DI +P+M G+ +
Sbjct: 3 VLVIEDEAPIREFEVTYLRDAGYGTIEAADGQAAVELFVEHKPDLAIIDINLPKMSGLNV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + ++ +T + + + KPF+ LV V LL
Sbjct: 63 CKAIR-TTSTMPILIVTARDSDEDEVKGLSMGADDYIKKPFNPNVLVARVQALL 115
>gi|297531093|ref|YP_003672368.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
gi|297254345|gb|ADI27791.1| two component transcriptional regulator, winged helix family
[Geobacillus sp. C56-T3]
Length = 225
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED D+R +I+ L +EV +G ++ + ++ D+++P +DG
Sbjct: 2 KLLVVEDHHDLREAMIEMLADE-FEVDGACDGDEGLFLAQQNIYDAIILDVMLPGIDGFS 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + V+F+T ++ L KPF +L + LL
Sbjct: 61 IVRRLREDGIETPVLFLTARDSLEDRVKGLDFGGDDYLVKPFQSPELKARLRALLRR 117
>gi|16331910|ref|NP_442638.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1001828|dbj|BAA10709.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 232
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ L KAL + Y V +G A+ + + ++L + D ++P + G
Sbjct: 2 RLLLVEDEPDLGMALEKALRRENYVVDWVQDGNLAWSYLDQGWVNYTLAIFDWMVPGLSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL ++ L ++ +T +A + L KPF + +L+ + L +
Sbjct: 62 LELCQKLRGQRSSLPILMLTAKDQIADRVEGLDAGADDYLIKPFGMAELLARLRS-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|28896527|ref|NP_802877.1| two-component response regulator (CsrR/CovR) [Streptococcus
pyogenes SSI-1]
gi|28811781|dbj|BAC64710.1| putative two-component response regulator (CsrR/CovR)
[Streptococcus pyogenes SSI-1]
Length = 228
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAI 116
>gi|220906498|ref|YP_002481809.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
gi|219863109|gb|ACL43448.1| response regulator receiver protein [Cyanothece sp. PCC 7425]
Length = 120
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED + L +GY V+S NG A D+ + +++TD+VMPEM
Sbjct: 1 MS-TVLVVEDTPSELELISSYLRDSGYRVLSAANGKEALDQAMKHHPDVVVTDVVMPEMS 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL R + ++ ++ + + ++KPF+ DLV V LL
Sbjct: 60 GFELCRNLKKNPATQNVPIVICSSKNQELDRLWALKQGADGYITKPFNREDLVRAVRSLL 119
>gi|150397445|ref|YP_001327912.1| two component transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150028960|gb|ABR61077.1| two component transcriptional regulator, winged helix family
[Sinorhizobium medicae WSM419]
Length = 233
Score = 139 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V + + A K+ F LL+ D++MP GI
Sbjct: 13 HLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIA 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ + ++ +T A + L KPF R+LV +N +L
Sbjct: 73 LTQSLRQIKS-VPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRR 128
>gi|326390090|ref|ZP_08211652.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
gi|325993955|gb|EGD52385.1| two component transcriptional regulator, winged helix family
[Thermoanaerobacter ethanolicus JW 200]
Length = 229
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ EDD ++ +F+ L K YE + G + E FS+++ DI++P++ G
Sbjct: 2 HKILVIEDDVNIAKFVKINLDKY-YETEIVHEGEKTLYLLERERFSVIVLDIMLPDISGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + + V+ +T + ++KPF+ R+LV V ++
Sbjct: 61 ELLKKIRAMKVNTPVIILTAKSQDVDKILGLELGADDYITKPFNPRELVARVRAVIRR 118
>gi|229114656|ref|ZP_04244070.1| Response regulator [Bacillus cereus Rock1-3]
gi|228668721|gb|EEL24149.1| Response regulator [Bacillus cereus Rock1-3]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ + + L L K G+ + + + A + + + L++ D+++P G +
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAELALSLIEQNNYDLIILDVMLPGQSGFD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D + F++ A+ + ++KPF+ ++V + L
Sbjct: 66 ICPIIRQQT-DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|187934770|ref|YP_001885970.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
gi|187722923|gb|ACD24144.1| regulatory protein VanR [Clostridium botulinum B str. Eklund 17B]
Length = 237
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KIL+ +D+ ++ + L L K G+ V + + L++ DI++P+
Sbjct: 1 MNNKILIVDDEIEILKLLETVLKKEGFNNVYTAKTLKEGLAEFNRVKPELVILDIMLPDG 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG E+ + ++ ++F++ A ++KPF +++ V L
Sbjct: 61 DGYEICKDIRSK-SNVPILFLSAKTEELDKILGFAIGGDDYITKPFSPKEVAFRVKAHLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|223935938|ref|ZP_03627853.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
gi|223895539|gb|EEF61985.1| two component transcriptional regulator, winged helix family
[bacterium Ellin514]
Length = 224
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 51/119 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ F+ KAL + V ++G A PF ++ DI++P DG+
Sbjct: 2 RILVVEDEKKTASFIRKALQAESFAVDVSHDGTEALLLASNTPFDAIVLDIMLPGRDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + V+ ++ V + L KPF L +L+ V + N
Sbjct: 62 VLRQLRQQKNQTPVLLLSARGEVNERVEGLNAGADDYLPKPFALAELIARVRSIGRRSN 120
>gi|120405382|ref|YP_955211.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119958200|gb|ABM15205.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 250
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/108 (24%), Positives = 57/108 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + + AL G+E+ + +GA+A R+ P +++ D+++P+M G+E
Sbjct: 26 HVLVVDDEPVLAELVSMALRYEGWEISTAGDGATAIAIARDNPPDVVVLDVMLPDMSGLE 85
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
+ R+ E P L ++ +T +V ++KPF + ++V
Sbjct: 86 VLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSIEEVV 133
>gi|111019061|ref|YP_702033.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|226361154|ref|YP_002778932.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
gi|110818591|gb|ABG93875.1| response regulator, two-component system [Rhodococcus jostii RHA1]
gi|226239639|dbj|BAH49987.1| two-component response regulator RegX3 [Rhodococcus opacus B4]
Length = 229
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 23/116 (19%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 4 VLIVEDEESLADPLAFLLRKEGFETTIVGDGPSALAEFDRAGADIVLLDLMLPGMSGTDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 64 CKQLRSR-SGVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 118
>gi|42782234|ref|NP_979481.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
gi|42738159|gb|AAS42089.1| DNA-binding response regulator VicR [Bacillus cereus ATCC 10987]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
+K+L+ ED+ +R + GY+V++ +G + SL++ DI++P MD
Sbjct: 2 KKVLIIEDEKIIRETVAHYFSHDGYDVITAEDGQIGLELFAAHDHEVSLIILDIMLPVMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G + RR + ++ ++ +T + ++KPF L+ RL
Sbjct: 62 GWSICRRIRK-SSNVPIILLTARSDEDDTLLGFELGADDYVTKPFKPAILLARAKRL 117
>gi|331001460|ref|ZP_08325078.1| transcriptional regulatory protein QseB [Parasutterella
excrementihominis YIT 11859]
gi|329568189|gb|EGG50006.1| transcriptional regulatory protein QseB [Parasutterella
excrementihominis YIT 11859]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L GY V +G SA + PFSL++ D+ +P DG+
Sbjct: 11 RILLVEDDEMIGEAVADGLKGEGYAVDWVKDGNSAIIALDTTPFSLVILDLGLPGKDGLA 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ T V + L KP+ L +L + LL
Sbjct: 71 VLKEIRFRKNHTPVLVTTARDTVNDRIEGLDAGADDYLIKPYDLDELSARIRALLRR 127
>gi|332715676|ref|YP_004443142.1| putative two-component response regulator protein [Agrobacterium
sp. H13-3]
gi|325062361|gb|ADY66051.1| probable two-component response regulator protein [Agrobacterium
sp. H13-3]
Length = 246
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ IL+ +DD ++R + L K G +G + L++ D++MP
Sbjct: 1 MDHIDHILVVDDDREIRELVSSYLKKNGLRTSVAADGRQMRSFLDGNTVDLIVLDVMMPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R V+ +T LSKPF R+L+ + +
Sbjct: 61 DDGLVLCRELRAGKHKTTPVLMLTARDDEMDRIIGLEMGADDYLSKPFAARELLARIKAI 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|295089945|emb|CBK76052.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Clostridium cf.
saccharolyticum K10]
Length = 231
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD + + L G+EV+ +G A + ++ +L++ D++MP +DGI
Sbjct: 2 QKILVCDDDRQIVEAIDIYLTGEGFEVIKAYDGLEALELLKTHEVNLMIVDVMMPGLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ + + ++KPF+ +LV V L
Sbjct: 62 RTTLKVRE-TSSIPIIILSAKSEDSDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118
>gi|239629091|ref|ZP_04672122.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239519237|gb|EEQ59103.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 240
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD + + L G++V+ +G A + + LL+ D++MP +DGI
Sbjct: 11 QTILVCDDDKQIVEAIDIYLTGEGFQVIKAYDGYEALEYLEGNQVDLLIVDVMMPGLDGI 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + A ++KPF+ +LV V L
Sbjct: 71 RTTLKVRE-NSSIPIIILSAKSEDADKILGLNIGADDYITKPFNPLELVARVKSQLRR 127
>gi|256833090|ref|YP_003161817.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
gi|256686621|gb|ACV09514.1| two component transcriptional regulator, winged helix family
[Jonesia denitrificans DSM 20603]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD + L +ALG+ GY VV G A D L++ D+ +P+MD
Sbjct: 1 MT-HVLLAEDDPAISEPLARALGREGYNVVVQGTGQGAIDHA--GAADLVVLDLGLPDMD 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR + V+ +T A ++KPF L +L+ V LL
Sbjct: 58 GLEVARAIRQKGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRR 117
Query: 121 KN 122
+
Sbjct: 118 TH 119
>gi|254520350|ref|ZP_05132406.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
gi|226914099|gb|EEH99300.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KILL ED++ +R FL L + +V+ + G E + + D+++P +D
Sbjct: 1 MN-KILLVEDEESIRAFLKINLQRNNLQVIEASTGEEGLKLANIENPKIAVLDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + P + ++ +T + KPF+ ++V + LL
Sbjct: 60 GFKVCNKLRSEFPGMGIIMLTAKGQDMDKIMGLEYGADDYIVKPFNPLEVVLRIKALLRR 119
>gi|256376335|ref|YP_003099995.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
gi|255920638|gb|ACU36149.1| two component transcriptional regulator, winged helix family
[Actinosynnema mirum DSM 43827]
Length = 244
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED ++R + AL A ++V S +G +A + VR+ ++L D+ +P DG+E
Sbjct: 19 KVLVVEDTQEIRTVIEMALTDARFDVRSAGDGDTALELVRQWDPEVVLLDLNIPGPDGLE 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T A + L+KPF R+LV V+ +L
Sbjct: 79 VCRRLRQ-FSTAYVLMLTARADEVDKLVGLSAGADDYLTKPFSPRELVARVHTVLRR 134
>gi|225548096|ref|ZP_03769381.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
10507]
gi|225040772|gb|EEG51018.1| hypothetical protein RUMHYD_00075 [Blautia hydrogenotrophica DSM
10507]
Length = 225
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+++ L L + G+ V +C +G A +RE L+L D ++P MDGI
Sbjct: 2 RILLVEDDENLCYTLQYQLEQEGFLVDTCMDGEDALFFIRERVHDLILLDRMLPSMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+F+T +++ + KPF +L+ + L+ +
Sbjct: 62 VLKALRREKIFTPVIFLTALSSLQDKITGLDCGADDYMVKPFAFEELMARIR-CLSRR 118
>gi|218674659|ref|ZP_03524328.1| two-component response regulator protein [Rhizobium etli GR56]
Length = 185
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-D 60
+ +L+ +DD +R+ L + GY V S +GA ++R++ F +L D+V+P D
Sbjct: 7 DAHLLVVDDDPRIRQMLTRYFEDEGYTVSSAADGAEMRVRLRQQNFDAVLLDLVLPGGAD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++LAR D+ +M +TG V ++KPFHLR++ + +L
Sbjct: 67 GLDLAREIRAQ-SDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRR 125
Query: 121 K 121
+
Sbjct: 126 R 126
>gi|107023589|ref|YP_621916.1| two component transcriptional regulator [Burkholderia cenocepacia
AU 1054]
gi|105893778|gb|ABF76943.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia AU 1054]
Length = 282
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 59/119 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+AEDD + L ++L ++GY V +G A + + F LL+ D+ +P+M G
Sbjct: 40 NMRILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSG 99
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ +R + +L V+ +T +V ++KPF L +L V L
Sbjct: 100 LDVLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 158
>gi|148543356|ref|YP_001270726.1| two component transcriptional regulator [Lactobacillus reuteri DSM
20016]
gi|184152766|ref|YP_001841107.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
gi|194467516|ref|ZP_03073503.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|227364430|ref|ZP_03848520.1| response regulator [Lactobacillus reuteri MM2-3]
gi|325683629|ref|ZP_08163145.1| response regulator [Lactobacillus reuteri MM4-1A]
gi|148530390|gb|ABQ82389.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri DSM 20016]
gi|183224110|dbj|BAG24627.1| two-component response regulator [Lactobacillus reuteri JCM 1112]
gi|194454552|gb|EDX43449.1| two component transcriptional regulator, winged helix family
[Lactobacillus reuteri 100-23]
gi|227070523|gb|EEI08856.1| response regulator [Lactobacillus reuteri MM2-3]
gi|324977979|gb|EGC14930.1| response regulator [Lactobacillus reuteri MM4-1A]
Length = 229
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE +S +G A K+ P L++ D++MPE+DG+
Sbjct: 2 KILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +R + D D+ ++ ++ A ++KPF+ +++ V LL
Sbjct: 62 DVIKRVRK-DSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|86158431|ref|YP_465216.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85774942|gb|ABC81779.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 463
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 66/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++
Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAVDGFAALEKLKAERWSILIVDLKMPGMDGLQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ A +L P+L V+ +T +A V + L KPF +L + ++++ +
Sbjct: 67 VLEEAKKLQPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124
>gi|332886069|gb|EGK06313.1| hypothetical protein HMPREF9456_00187 [Dysgonomonas mossii DSM
22836]
Length = 228
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ D+ L L G++V + A K+ FSL+L D++M M
Sbjct: 1 MGNKILIVDDEKDICEILEFNLSNEGFDVELAYSAEEALKKLNP-DFSLILLDVMMGGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++A + + ++ ++F+T + +SKPF +++++ + ++
Sbjct: 60 GYKMAEKLRKEGNNIPIVFLTAKDTENDMLTGFSVGGDDYISKPFSIKEVIARIKAVVKR 119
>gi|310827934|ref|YP_003960291.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
gi|308739668|gb|ADO37328.1| two component transcriptional regulator [Eubacterium limosum
KIST612]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ L+ L +GY + +G A + ++ ++L+L D+++P M G E+
Sbjct: 6 ILIVEDDVNISNMLVDLLTHSGYTADTAYSGTEALFCLEKKSYALILLDLMLPGMSGEEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D V+ ++ ++KPF+ +L+ + LL
Sbjct: 66 LKSLRQ-TSDTLVIAVSAKDDSPTKISLLKNGADDYITKPFNNEELLARIEALLRR 120
>gi|296394042|ref|YP_003658926.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
gi|296181189|gb|ADG98095.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length = 228
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ + L L K G+E V +G +A + ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPAALTEFDRSGADIVLLDLMLPGMG 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L + +L
Sbjct: 60 GNDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRR 118
>gi|288959103|ref|YP_003449444.1| two-component response regulator [Azospirillum sp. B510]
gi|288911411|dbj|BAI72900.1| two-component response regulator [Azospirillum sp. B510]
Length = 134
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L + +AG++V +G A V L+L D +MP+ D
Sbjct: 1 MKPTILVVDDEPSIVLSLQVLMQRAGFDVRIARDGDEALRSVETFTPDLILLDAMMPKRD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G ++ + L ++ +T + A ++KPF RDL+ V R L
Sbjct: 61 GFDVCQTLRTNPAWKTLPIIMLTARSRDVERQKGLALGATDYITKPFSTRDLLATVRRHL 120
>gi|228938339|ref|ZP_04100951.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228971217|ref|ZP_04131847.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228977826|ref|ZP_04138209.1| Response regulator [Bacillus thuringiensis Bt407]
gi|228781888|gb|EEM30083.1| Response regulator [Bacillus thuringiensis Bt407]
gi|228788496|gb|EEM36445.1| Response regulator [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228821328|gb|EEM67341.1| Response regulator [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326938847|gb|AEA14743.1| two-component response regulator yvrH [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ + + L L K G+ + + + A +++ + L++ D+++P G +
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLIKQNNYDLIILDVMLPGQSGFD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D + F++ A+ + ++KPF+ ++V + L
Sbjct: 66 ICPIIRQQT-DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|218281202|ref|ZP_03487726.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989]
gi|218217590|gb|EEC91128.1| hypothetical protein EUBIFOR_00289 [Eubacterium biforme DSM 3989]
Length = 225
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ ++ + + L + ++V +G D + + + DI++P M+
Sbjct: 1 MN--ILVVDDEKNIAYAIAQILEEQKWQVTMAYDGQEGLDLALSGYYDVAILDIMLPGMN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ + + ++ + ++KPF +LV +N L
Sbjct: 59 GFEIVQKMRANKIETPTLLLSALDEIPDKVKGLNVGADDYMTKPFSAAELVARINALTRR 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|153814418|ref|ZP_01967086.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
gi|317500137|ref|ZP_07958370.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087636|ref|ZP_08336564.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848814|gb|EDK25732.1| hypothetical protein RUMTOR_00628 [Ruminococcus torques ATCC 27756]
gi|316898426|gb|EFV20464.1| DNA-binding response regulator ResD [Lachnospiraceae bacterium
8_1_57FAA]
gi|330399815|gb|EGG79475.1| hypothetical protein HMPREF1025_00147 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 235
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+AEDD D+ L K L ++ + +G A L+L D+++P +
Sbjct: 1 MGEQILIAEDDADINNLLAKILRTEHFKPIQAFSGTEAKLLFMHNTPDLILLDLMLPGLS 60
Query: 61 GIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G EL E L D+ V+ ++ A+A ++KPF +++ + L
Sbjct: 61 GEELLSELRENLSSDVPVIILSAKIALADKVSLLKMGADDYITKPFEPEEVIARIQAALR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|21241604|ref|NP_641186.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|84625209|ref|YP_452581.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|294626081|ref|ZP_06704689.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665691|ref|ZP_06730966.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325915004|ref|ZP_08177335.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325922400|ref|ZP_08184169.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
gi|21106962|gb|AAM35722.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|84369149|dbj|BAE70307.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|292599617|gb|EFF43746.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604533|gb|EFF47909.1| two-component system regulatory protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|325538792|gb|EGD10457.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325547097|gb|EGD18182.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
Length = 248
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 139
>gi|326797386|ref|YP_004315206.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
MMB-1]
gi|326548150|gb|ADZ93370.1| ATP-binding region ATPase domain protein [Marinomonas mediterranea
MMB-1]
Length = 2241
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LL ED++ R ++ L ++G + NG A +KV+E + ++L D+ MP MDGI
Sbjct: 1905 KRVLLVEDNELNSRVVLGYLEESGVMLDMAENGQQALEKVQEVHYDVVLMDLQMPIMDGI 1964
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ + L ++ +T A+V ++KP + +L + R ++
Sbjct: 1965 TATRKIRAVFDEKTLPIVAMTAHASVEDKQRCLEAGMNDYITKPVDIDELYGVMKRHMS 2023
Score = 70.5 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMPE 58
++L+ +D + RR ++ L + G + A + +RE + +LL + +
Sbjct: 1760 RVLVVDDSNIARRAIVYMLKEIGVQCDDVGAPIEALECIREGNGASTNYDVLLMERYLAG 1819
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+D ++ R+ + + +L + ++ F+ S VL KP L L +
Sbjct: 1820 VDCLDTIRKIKKESSNKNLTSIIVSSFSDEEKQLLSVDRDIDDVLDKPVDLSSLRQAL 1877
>gi|302870967|ref|YP_003839603.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
gi|302573826|gb|ADL41617.1| two component transcriptional regulator, winged helix family
[Caldicellulosiruptor obsidiansis OB47]
Length = 224
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED + + + + L + GY +G + L++ DI++P++DGI
Sbjct: 2 RILIVEDQESLAHTIARRLQEVGYSTDITFDGQEGLHFATSTSYDLIILDIMLPKIDGIN 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ +T ++ L KPF +L+ + LL
Sbjct: 62 LLKLIRLKGIQTPVLCLTAKDSIEDRVIGLDAGADDYLVKPFSFDELLARIRALLRR 118
>gi|294101700|ref|YP_003553558.1| two component transcriptional regulator, winged helix family
[Aminobacterium colombiense DSM 12261]
gi|293616680|gb|ADE56834.1| two component transcriptional regulator, winged helix family
[Aminobacterium colombiense DSM 12261]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+ + L + + G+ V G +K + ++ D+++P +
Sbjct: 1 MS--LLIIEDNKDLVQVLAEGFAENGFSVERAYTGEEGLEKAKNPECECIVLDLMLPGIS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R L ++ +T +V + L KPF R+L+ V LL
Sbjct: 59 GLEVLERLRSNGATLPIIILTAKDSVDEKVEGLNKGADDFLVKPFDFRELLARVRTLLRR 118
>gi|302383482|ref|YP_003819305.1| response regulator receiver modulated diguanylate cyclase
[Brevundimonas subvibrioides ATCC 15264]
gi|302194110|gb|ADL01682.1| response regulator receiver modulated diguanylate cyclase
[Brevundimonas subvibrioides ATCC 15264]
Length = 454
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + R L L Y+V++C++GA+A E ++L D++MP MD
Sbjct: 1 MTARILVVDDVEANVRLLEAKLTLEYYDVLTCSDGATAVRLAASEKPDIILLDVMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E RR + ++ +T ++KP L V L
Sbjct: 61 GFETCRRIKADPATNHIPIVLVTALDGREDRIKGLEAGADDFVTKPLDDVVLFARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 69.8 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 4/120 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + L + + V + A+ + P L++ ++ DG+
Sbjct: 155 RVLIVDDNARQAAGIAEELTRE-HRPVIETDAAAGL-ISSKTPVDLMIVNVTAASFDGLR 212
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + DP L ++ + A + +L +P +L + K
Sbjct: 213 LIAQVRSADPTRHLPILAVVDPADRPRLVKALELGVNDILMRPVDPEELAARARTQVRRK 272
>gi|228996291|ref|ZP_04155936.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229003958|ref|ZP_04161764.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757327|gb|EEM06566.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228763483|gb|EEM12385.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
N +LL +D+ + + L L K G+ + + + A V + + L++ D+++P
Sbjct: 3 NANVLLVDDETAILQLLTTILQKEGFSHITTATSAEEALQFVEQNRYDLMILDVMLPGQS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D + F+T ++ ++KPF+ ++V + L
Sbjct: 63 GFDICPIIRQKT-DCPIFFLTAKSSDLDKVSGFLYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|255533554|ref|YP_003093926.1| response regulator receiver [Pedobacter heparinus DSM 2366]
gi|255346538|gb|ACU05864.1| response regulator receiver [Pedobacter heparinus DSM 2366]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED D+ +++ L + G E+ +G + + + F L++ DI++P M+GI+
Sbjct: 5 KVLLIEDTPDLVSVILRGLSEEGIEISVAADGVTGLEMAFKYDFDLIVLDIMLPVMNGIQ 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + + D+ ++ +T + L KPF L +LV + L+ +
Sbjct: 65 VCKEIRKRNTDVAILMLTALGSTENIVTGLESGADDYLVKPFKLEELVARMRTLIRRSS 123
>gi|227485677|ref|ZP_03915993.1| two component response regulator [Anaerococcus lactolyticus ATCC
51172]
gi|227236349|gb|EEI86364.1| two component response regulator [Anaerococcus lactolyticus ATCC
51172]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ D+ + + L GY +NG A D E + L++ D+ +P DG E
Sbjct: 2 KVLIVEDELDLLDSIAEGLTLMGYVTDKASNGDDAIDMAFVESYDLIILDVNLPGKDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + ++ ++ +T + + + + KPF L++L + L K
Sbjct: 62 VLRSIRQFNKEIAIIMLTARSDIEDRVKGLDLGASDYMVKPFALKELDARMRSHLRGK 119
>gi|261340650|ref|ZP_05968508.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC
35316]
gi|288317064|gb|EFC56002.1| DNA-binding response regulator TctD [Enterobacter cancerogenus ATCC
35316]
Length = 224
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V N+G +A ++ E +++ + DI MP DG+E
Sbjct: 2 RLLLAEDNRELAHWLKKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L V+F+T + VA L KPF L +L + LL
Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRR 118
>gi|148273675|ref|YP_001223236.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
gi|147831605|emb|CAN02573.1| putative two-component system response regulator [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I+L ED+ + L L + GYEV +G +A ++ L+L D+++P + G E
Sbjct: 3 RIMLVEDEASLSEPLAFLLQREGYEVDVVEDGPAAVASFDKDGADLILLDLMLPGLPGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T + ++KP+ R+L+ + +L +
Sbjct: 63 VCREIR-TRSAVPIIMLTAKDSEVDIVVGLELGADDYVTKPYSTRELLARIRAVLRRR 119
>gi|113867801|ref|YP_726290.1| response regulator [Ralstonia eutropha H16]
gi|113526577|emb|CAJ92922.1| response regulator, OmpR-family [Ralstonia eutropha H16]
Length = 232
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++++L+ EDD D+ + + +V N+G + ++ P+ L++ D+++P D
Sbjct: 1 MSRQVLVIEDDADIAELVRLQVSGLSCDVKVINHGRAGLEEALSRPYDLVILDLMLPGAD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR ++ +T + L+KPF + +L V + +
Sbjct: 61 GLEICRRLRAEPRYTPILMLTARSTELDRVLGLEMGADDYLTKPFSVLELTARVKAIFRL 120
>gi|332185911|ref|ZP_08387658.1| response regulator [Sphingomonas sp. S17]
gi|332014269|gb|EGI56327.1| response regulator [Sphingomonas sp. S17]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D+ +R L L K G+ V + ASA ++ L++ DI+MP DG+
Sbjct: 6 HLLLVDDERSIREPLAVYLTKQGFRVTQAGDAASARTRLAAYAIDLVILDIMMPGEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ V+ +T A + KPF R+L +L
Sbjct: 66 LCRHI-AATSEVPVILLTARAEETDRIVGLEMGADDYVVKPFSPRELATRAKVVLRR 121
>gi|304313326|ref|YP_003812924.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
gi|301799059|emb|CBL47302.1| Signal transduction histidine kinase [gamma proteobacterium HdN1]
Length = 1224
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDG 61
Q++LL +DD L L +G+EV + NG A D + E F L+L DI+MPEMDG
Sbjct: 1103 QRVLLVDDDIRNLYSLSAVLEDSGWEVRTAANGREALDILSSEGAFDLVLMDIMMPEMDG 1162
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
E RR + ++ +T A A LSKP L V L
Sbjct: 1163 FEAMRRIRGQAAFEKMPIIALTAKAMRDDRAQCVAAGANDYLSKPVDPSKLKAIVKMWL 1221
Score = 61.3 bits (149), Expect = 4e-08, Method: Composition-based stats.
Identities = 13/106 (12%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR------EEPFSLLLTDIVMPE 58
+L+ EDD+ R + + + ++ A + + + ++ D+ +P+
Sbjct: 954 VLIIEDDEVQRDLIEVSFREQEIACDLASSAVEAREYLAAMEQTPARHYGAMVVDLDLPD 1013
Query: 59 MDGIELARRATELDP-DLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
DG +L + + ++ T +++ K
Sbjct: 1014 CDGFQLVDELHQSTNGSIPIIVYTARDLTRQQDADLRRFATRIVLK 1059
Score = 56.3 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED + L + G+E ++ A+A+ + + ++ D+ +P+ G EL
Sbjct: 832 LIIEDHPEFSTVLKDLATEFGFEAACVHSAAAAHRYLERWTPASIVLDLGLPDSPGEELL 891
Query: 66 RRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ V I+G ++ ++KPF +
Sbjct: 892 SWLKAQPHTAQIPVHVISGK---ENVVMDELAGASEFIAKPFGRDRM 935
>gi|292900777|ref|YP_003540146.1| two-component response regulator [Erwinia amylovora ATCC 49946]
gi|291200625|emb|CBJ47757.1| two-component response regulator [Erwinia amylovora ATCC 49946]
Length = 219
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD +++ L AL GY V N A ++ +SL++ D+ +P+ DG +
Sbjct: 2 KILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGAD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ + DL V+ ++ A++ D L KPF L +L V L+
Sbjct: 62 LLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRR 118
>gi|257469232|ref|ZP_05633326.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
gi|317063479|ref|ZP_07927964.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
gi|313689155|gb|EFS25990.1| two component transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
Length = 220
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ ++R L L K GY+V +G A E+PF L++ DI++P+ DG
Sbjct: 2 KKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + + VM ++ + ++KPF+ + L+ + L+
Sbjct: 62 SVLREIKK-YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKALIK 117
>gi|150018389|ref|YP_001310643.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149904854|gb|ABR35687.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ + RF+ L GYE++ +NG + + L+L DI++P+++G+E
Sbjct: 3 KILIVEDDEKLARFVELELLHEGYEILKADNGRLGLEIAEKGEVDLVLLDIMIPQINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR + DL V+ +T AV ++KPF + +L+ + L +
Sbjct: 63 VLRRIRK-TSDLPVIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTALKRR 119
>gi|333031401|ref|ZP_08459462.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
gi|332741998|gb|EGJ72480.1| two component transcriptional regulator, winged helix family
[Bacteroides coprosuis DSM 18011]
Length = 228
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +D+ D+ L L G V + A K+ E SL+L DI+M M
Sbjct: 1 MKPKILIVDDEPDICEILTFNLVNEGLIVDYAYSAEEALQKLSPEH-SLILLDIMMDGMS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++A + ++ ++F+T + + +SKPF +++++ V +L
Sbjct: 60 GYKMAEKLRSEGNEIPIIFLTAKRSENDMLTGFSVGADDYISKPFSIKEVIARVKAILKR 119
>gi|329938744|ref|ZP_08288140.1| two component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329302235|gb|EGG46127.1| two component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 249
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L AL G+ + S +G A RE ++ D+++P+MDG+
Sbjct: 24 RVLVVDDELSITELLSMALRYEGWRIRSAGDGQGAVRAAREFRPDAVVLDLMLPDMDGLS 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R PD+ V+F+T A ++KPF + D+V + L+
Sbjct: 84 ALGRLRRELPDVPVLFLTAKDAAEDRIAGLTAGGDDYVTKPFGVEDVVARLRGLIRR 140
>gi|326692618|ref|ZP_08229623.1| DNA-binding response regulator [Leuconostoc argentinum KCTC 3773]
Length = 210
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 51/118 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ ED+ ++ +L L GY V+ +G + E +L D ++P+ G+
Sbjct: 3 TVLIIEDEMSLQFYLKNELTFEGYTVLQAFDGQQGLALLASETGDAVLLDWMLPKKSGMA 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + + L V+ +T + + L+KPF +L+ + +L +
Sbjct: 63 VLRHVRQTNQTLPVILMTAKSELDDKVMGLDNGADDYLTKPFETEELLARLRVVLRRQ 120
>gi|323483016|ref|ZP_08088410.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
WAL-14163]
gi|323691539|ref|ZP_08105808.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
WAL-14673]
gi|323403645|gb|EGA95949.1| hypothetical protein HMPREF9474_00159 [Clostridium symbiosum
WAL-14163]
gi|323504433|gb|EGB20226.1| hypothetical protein HMPREF9475_00670 [Clostridium symbiosum
WAL-14673]
Length = 242
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD + R L + + ++ + NG A +E L++ DI M MDG+
Sbjct: 18 KKILIVDDDKRVVRMLEEYMKLYNFQTLCAGNGKDALALY-DETVDLIILDINMQGMDGV 76
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + ++ ++ ++ AA ++ + KPF +L+ V +
Sbjct: 77 EVCRRIRKQG-NVPIIMLSANAASFDKVEALGAGADDYIVKPFDPVELLARVRAHIGR 133
>gi|198274559|ref|ZP_03207091.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135]
gi|198272613|gb|EDY96882.1| hypothetical protein BACPLE_00711 [Bacteroides plebeius DSM 17135]
Length = 1346
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+D +R+ L + G YEV + +G A +KV E ++L+D++MP M GIE
Sbjct: 1097 HILIVEDNDSIRQMLAELFGGM-YEVTTAVDGQDALEKVEESSPHIILSDVLMPRMSGIE 1155
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ + V+ +T + N + ++KPF R LV N L+ +
Sbjct: 1156 LVKQLKGNLDTCHIPVVLLTARTEIEQNLEGLKIGADDYITKPFDSRLLVFRCNNLVNNR 1215
>gi|159184131|ref|NP_353073.2| two component response regulator [Agrobacterium tumefaciens str.
C58]
gi|159139468|gb|AAK85858.2| two component response regulator [Agrobacterium tumefaciens str.
C58]
Length = 241
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I L +DD ++ + AL GY V + +GASA D + P L + DI MP MDG+
Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYRVETYTDGASALDGLIARPPQLAIFDIKMPRMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + D+ V+F+T ++KPF R LV V +L
Sbjct: 62 ELLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118
>gi|29347575|ref|NP_811078.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|153808727|ref|ZP_01961395.1| hypothetical protein BACCAC_03026 [Bacteroides caccae ATCC 43185]
gi|253572035|ref|ZP_04849439.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|298383731|ref|ZP_06993292.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
gi|29339476|gb|AAO77272.1| two-component system response regulator [Bacteroides
thetaiotaomicron VPI-5482]
gi|149128553|gb|EDM19771.1| hypothetical protein BACCAC_03026 [Bacteroides caccae ATCC 43185]
gi|251838215|gb|EES66302.1| two-component system response regulator [Bacteroides sp. 1_1_6]
gi|298263335|gb|EFI06198.1| DNA-binding response regulator RprY [Bacteroides sp. 1_1_14]
Length = 233
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ +ILL EDD+++ L + L GY +G + Y + + L + D++MP+
Sbjct: 1 MDEKLRILLCEDDENLGMLLREYLQAKGYSAELYPDGEAGYKAFLKNKYDLCVFDVMMPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG LA+ + ++ ++F+T + ++KPF + +L + +L
Sbjct: 61 KDGFTLAQDVRAANAEIPIIFLTAKTLKEDILEGFKIGADDYITKPFSMEELTFRIEAIL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|16329722|ref|NP_440450.1| NarL subfamily protein [Synechocystis sp. PCC 6803]
gi|1652206|dbj|BAA17130.1| NarL subfamily [Synechocystis sp. PCC 6803]
Length = 213
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +LL +DD ++ + L GY+V + NG A D + +++ DI+MPEMDG
Sbjct: 7 NYHLLLVDDDPNLLLLVKDYLEYQGYQVTTAGNGREALDLLTTTVPDMIVCDIMMPEMDG 66
Query: 62 IELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ + +PD + VMF++ ++KPF +L +V L
Sbjct: 67 YAFIEQVRQ-NPDISWIPVMFLSAKGQSHNRVKGLNVGADIYMAKPFEPEELAAQVQSCL 125
Query: 119 T 119
Sbjct: 126 R 126
>gi|108803040|ref|YP_642977.1| two component transcriptional regulator [Rubrobacter xylanophilus
DSM 9941]
gi|108764283|gb|ABG03165.1| two component transcriptional regulator, winged helix family
[Rubrobacter xylanophilus DSM 9941]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + R L + L GY +S +G + EE ++L DI++P +DG E
Sbjct: 2 RVLIVEDEPGIVRMLERGLSAQGYSCLSAEDGETGLRMALEEDVDVVLLDIMLPGLDGRE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR P L V+ +T V S L+KPF +L+ + L+
Sbjct: 62 VLRRLRLRRPGLPVLMLTARDEVETKVGSLDAGADDYLTKPFAFEELLARIRALVRR 118
>gi|331270596|ref|YP_004397088.1| two-component response regulator [Clostridium botulinum BKT015925]
gi|329127146|gb|AEB77091.1| two-component response regulator [Clostridium botulinum BKT015925]
Length = 231
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 53/121 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ ED+ + +F+ L K +EV+ +G KV E +++ DI++P ++G
Sbjct: 4 KHKVLVIEDEQSISKFIKLVLQKQDFEVIQAFSGEDGIKKVTTENPVVVILDIMLPGING 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + P + ++ +T + KPF+ +L + L+
Sbjct: 64 FKVCEILRKNHPKVGIIMLTALGQDVDKIKGLEHGADDYMIKPFNPLELAARIISLIRRM 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|296102332|ref|YP_003612478.1| OmpR family transcriptional regulatory protein [Enterobacter
cloacae subsp. cloacae ATCC 13047]
gi|295056791|gb|ADF61529.1| OmpR family transcriptional regulatory protein [Enterobacter
cloacae subsp. cloacae ATCC 13047]
Length = 246
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD D+R ++ L K+GY NG + ++ L++ D++MP DG+
Sbjct: 6 HILVVDDDRDIRELIVDYLVKSGYRASDAANGKEMRAVLDKQHVDLVVLDVMMPGDDGLT 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R DL ++ +T + KPF R+L+ + +L
Sbjct: 66 LCRGLRSGKHKDLPILMLTARNEETDRILGLEMGADDYVVKPFVARELLARIKAILRR 123
>gi|293402081|ref|ZP_06646220.1| KDP operon transcriptional regulatory protein KdpE
[Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304473|gb|EFE45723.1| KDP operon transcriptional regulatory protein KdpE
[Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL EDD ++RFL +L Y+V+S G + L+L D+ +P++D
Sbjct: 1 MKEKILLIEDDKSIQRFLRISLETKDYKVISAETGIEGISLYMTDNPDLILLDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + ++ ++ ++ ++ ++KPFH+ +L+ V L
Sbjct: 61 GMEVLSQIRAQ-SEVAILVVSARGQEQEKVEALDHGADDYITKPFHINELLARVRVALRK 119
Query: 121 K 121
K
Sbjct: 120 K 120
>gi|258654528|ref|YP_003203684.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258557753|gb|ACV80695.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 230
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 54/119 (45%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L+ +D+ ++ + ++ GY+V G A + L++ D+++P+ DG
Sbjct: 4 SARLLVVDDEPSLQDIVATSMRFLGYQVAVAGTGREAVRIATDSHPDLIILDVMLPDFDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ +R D V+F++ A ++KPF L +L V +L
Sbjct: 64 LEVMKRVRAAGVDSGVVFLSARDTPADKIAGLTAGGDDYVTKPFGLEELAARVAAVLRR 122
>gi|254713505|ref|ZP_05175316.1| Transcriptional regulatory protein chvI [Brucella ceti M644/93/1]
gi|254716139|ref|ZP_05177950.1| Transcriptional regulatory protein chvI [Brucella ceti M13/05/1]
gi|261217910|ref|ZP_05932191.1| regulatory protein BvrR [Brucella ceti M13/05/1]
gi|261321240|ref|ZP_05960437.1| regulatory protein BvrR [Brucella ceti M644/93/1]
gi|260922999|gb|EEX89567.1| regulatory protein BvrR [Brucella ceti M13/05/1]
gi|261293930|gb|EEX97426.1| regulatory protein BvrR [Brucella ceti M644/93/1]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
Q I L +DD ++ + AL GY V + +GASA D + P +L + DI MP MDG
Sbjct: 7 TQTIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLMARPPNLAIFDIKMPRMDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL R + DL V+F+T ++KPF R LV V +L
Sbjct: 67 MELLRHLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 124
>gi|227885266|ref|ZP_04003071.1| response regulator [Escherichia coli 83972]
gi|227837792|gb|EEJ48258.1| response regulator [Escherichia coli 83972]
gi|307556495|gb|ADN49270.1| putative response regulator [Escherichia coli ABU 83972]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|218782281|ref|YP_002433599.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
gi|218763665|gb|ACL06131.1| multi-sensor hybrid histidine kinase [Desulfatibacillum alkenivorans
AK-01]
Length = 1152
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 5/120 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL ED+ + L K GY+ + NG A + + E+ ++L DI MP MDG+E
Sbjct: 905 TVLLVEDNQVNQMVAKGILRKLGYKTLVVENGQEALEFLAEKQVDIILMDIQMPVMDGLE 964
Query: 64 LARRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR + LDP ++ +T A ++KP L + L
Sbjct: 965 ATRRIRDGRHKVLDPGAPIIAMTARAMKGDREKCLDAGMDDYITKPIDPAALAAVMASRL 1024
Score = 71.3 bits (175), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVM 56
++KIL+ +D R + L + G + G SA ++++ PF+ +L D M
Sbjct: 757 DKKILIVDDCPATRTSISLILQQWGCLCREASGGRSALEQLQRAVDKHAPFNAVLVDQAM 816
Query: 57 PEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
P+MDG L + E ++ + A L + A VL+KP + L
Sbjct: 817 PDMDGSALIQSIKENPAYEGARLALMAPLGAPGLKAAKSNQDAAAVLTKPVRKKQL 872
>gi|148977340|ref|ZP_01813954.1| putative two-component response regulator [Vibrionales bacterium
SWAT-3]
gi|145963453|gb|EDK28717.1| putative two-component response regulator [Vibrionales bacterium
SWAT-3]
Length = 220
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ L L G+++ NG +A + E F L++ DI+MP M+G+
Sbjct: 2 RILVAEDNHATAANLGDYLELFGHDIDFAYNGQAAIQLLGEARFDLIILDIMMPVMNGLT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
D+ ++F+T + L KPF L++L V L +N
Sbjct: 62 ACSAIRAGRHADIPIIFLTARDTLGDKLAGFKAGADDYLVKPFELQELHARVEA-LEARN 120
>gi|86739863|ref|YP_480263.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86566725|gb|ABD10534.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 235
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/103 (31%), Positives = 51/103 (49%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+DD +R L ++L GYEV + +GA A D + E +++ D++MP +DG+E RR
Sbjct: 2 VDDDAAVRESLERSLRFEGYEVATAVDGADALDVIGRERPDIVVLDVMMPRVDGLETCRR 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
D+ V+ +T +A L KPF L +L
Sbjct: 62 LRAQGDDVPVLMLTARDGLADRVSGLDVGADDYLVKPFALEEL 104
>gi|91775009|ref|YP_544765.1| two component transcriptional regulator [Methylobacillus
flagellatus KT]
gi|91708996|gb|ABE48924.1| two component transcriptional regulator, winged helix family
[Methylobacillus flagellatus KT]
Length = 244
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ +DD MR L + LG+ G+ V + ++ + E LL+ D+++P DG
Sbjct: 7 SKKILMVDDDLRMRELLQRYLGEQGFSVKAVSDAGEMDQVLAHEHVDLLVLDLMLPGEDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + RR + V+ +T L KPF+ R+L+ +N +L
Sbjct: 67 LAICRRLRANGSTIPVIMLTARGDEIDRIIGLEMGADDYLPKPFNPRELLARINAVLRRH 126
Query: 122 N 122
+
Sbjct: 127 S 127
>gi|330973419|gb|EGH73485.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aceris str. M302273PT]
Length = 230
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ +GA + LL+ D+ +P+
Sbjct: 1 MSQATTILVIDDEPQIRKFLRISLASQGYKVLEAASGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + V LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|306819875|ref|ZP_07453529.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304552122|gb|EFM40059.1| response regulator [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 236
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ ++ L L K Y++ +G + L+L DI++P MDG E
Sbjct: 6 HILIVEDEKNISDILKFNLEKESYDISQRFDGKEGLEFALSNEIDLILLDIMLPSMDGFE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + + ++ +T ++KPF +R++V V +
Sbjct: 66 ICKQIRK-TKNTPIIMLTAKEEEVDKVLGLELGADDYITKPFSVREVVARVKANVRR 121
>gi|294650744|ref|ZP_06728095.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
19194]
gi|292823390|gb|EFF82242.1| DNA-binding response regulator [Acinetobacter haemolyticus ATCC
19194]
Length = 243
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDEYDIGDIIEHYLKREGMRVIRAMNGKQAIEMHASQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ ++V V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVVARVQAVLRR 129
>gi|229029684|ref|ZP_04185759.1| DNA-binding response regulator [Bacillus cereus AH1271]
gi|228731626|gb|EEL82533.1| DNA-binding response regulator [Bacillus cereus AH1271]
Length = 218
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALQKIDEVKVDMVILDIMMPNMDGFDVCFEL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 62 RKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 112
>gi|237727976|ref|ZP_04558457.1| nitrogen regulation protein NR(I) [Citrobacter sp. 30_2]
gi|226910233|gb|EEH96151.1| nitrogen regulation protein NR(I) [Citrobacter sp. 30_2]
Length = 472
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L
Sbjct: 9 VWVVDDDSSIRWVLERALAGAGLSCTTFESGKEVLDALASKTPDVLLSDIRMPGMDGLTL 68
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 69 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 123
>gi|160942544|ref|ZP_02089792.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
M21/2]
gi|158446160|gb|EDP23163.1| hypothetical protein FAEPRAM212_00020 [Faecalibacterium prausnitzii
M21/2]
Length = 236
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|126736726|ref|ZP_01752465.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
gi|126713841|gb|EBA10713.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
Length = 249
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LL EDD + + LG G+ V + G + + PF ++ DI +P +D
Sbjct: 11 MTDAVLLVEDDTRLAEMVASYLGANGFGVTTAKTGEDGLGVLDDTPFKAVILDINLPGID 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + ++ +T L KPF R+L+ + ++
Sbjct: 71 GLEVCRRMKAR-SETPIIMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARLRAIMRR 129
>gi|159040471|ref|YP_001539724.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157919306|gb|ABW00734.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 228
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 46/116 (39%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ + + L + G+ V +G + R + DI +P + G E+
Sbjct: 11 VLLVEDEATIADLVRLYLNRDGFGVHLERDGDAGLAAARRLRPVACVLDIALPGLPGTEI 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E V+F+T ++KPF R+LV + +L
Sbjct: 71 CRRLREAGDWTPVIFLTARDDEVDRVVGLELGADDYVTKPFSPRELVARLRAVLRR 126
>gi|118470709|ref|YP_885340.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
MC2 155]
gi|118171996|gb|ABK72892.1| DNA-binding response regulator RegX3 [Mycobacterium smegmatis str.
MC2 155]
Length = 225
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ + L L K G+E +G SA + ++L D+++P M G ++
Sbjct: 2 LIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSGTDVC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 62 KQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 115
>gi|94480746|emb|CAK02710.1| putative response regulator [Escherichia coli]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|58039285|ref|YP_191249.1| two component response regulator ChvI [Gluconobacter oxydans 621H]
gi|58001699|gb|AAW60593.1| Two component response regulator ChvI [Gluconobacter oxydans 621H]
Length = 256
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I L +DD ++ + L G+ V + +G SA + P SL + D+ MP MDG+EL
Sbjct: 27 IALVDDDRNILASVQMTLEAEGFTVHTYTDGESALQGITSRPVSLAVLDVKMPRMDGMEL 86
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+R +L V+F+T ++KPF R L+ + LL ++
Sbjct: 87 LQRLRAR-SNLPVIFLTSKDEELDQLMGLRLGADDYITKPFSQRLLIERIRALLRRQD 143
>gi|90426125|ref|YP_534495.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90108139|gb|ABD90176.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 249
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + R + K L G V + +G + + + L++ D+++P+ DG+ L
Sbjct: 7 ILVVEDDRETRALIAKYLRANGCHVTAAADGHEMHKVMADRRVDLMIMDVMLPDEDGLSL 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ L ++ +T + KPF+ R+L+ +N +L +
Sbjct: 67 CRKVRAK-SQLPIIMLTARGEDVDRIVGLEMGADDYMVKPFNPRELLARINAVLRRQ 122
>gi|114564225|ref|YP_751739.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
gi|114335518|gb|ABI72900.1| two component transcriptional regulator, winged helix family
protein [Shewanella frigidimarina NCIMB 400]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ EDD + ++ L YEV + G A D + EE L+L D+++P +G
Sbjct: 4 KKHILVVEDDTSLAEWISDYLLDHDYEVTVASQGDYALDMIAEELPDLVLLDVMIPVKNG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + A ++F+T L+KP + L+ + LL
Sbjct: 64 FDVCKEARGFYSG-PILFMTACVEDGDEIQGLEMGADDYLTKPIRPQVLLARIKALLRRA 122
Query: 122 N 122
N
Sbjct: 123 N 123
>gi|116629368|ref|YP_814540.1| DNA-binding response regulator [Lactobacillus gasseri ATCC 33323]
gi|282850958|ref|ZP_06260332.1| response regulator receiver domain protein [Lactobacillus gasseri
224-1]
gi|311110978|ref|ZP_07712375.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
gi|116094950|gb|ABJ60102.1| DNA-binding response regulator, OmpR family (Rec-wHTH domains)
[Lactobacillus gasseri ATCC 33323]
gi|282557910|gb|EFB63498.1| response regulator receiver domain protein [Lactobacillus gasseri
224-1]
gi|311066132|gb|EFQ46472.1| DNA-binding response regulator DltR [Lactobacillus gasseri MV-22]
Length = 221
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI
Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ + V+ +T A + L+KPF L++L+ +
Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|332829438|gb|EGK02087.1| hypothetical protein HMPREF9455_01721 [Dysgonomonas gadei ATCC
BAA-286]
Length = 229
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ + L K L + G+EV +G + + + L++TDI++P +G
Sbjct: 2 KKILVIEDEKRIAELLGKGLSEFGFEVTLAFDGDTGKRLISSNLYDLIITDIILPHHNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R E + ++ +T A D + KPF LR+L +N LL
Sbjct: 62 EITRFVKEKYLHVPIIMLTALGATDDKLDGFDAGADDYMVKPFDLRELNARINVLLKR 119
>gi|312959784|ref|ZP_07774300.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
WH6]
gi|311285950|gb|EFQ64515.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
WH6]
Length = 774
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + LGK G EV+ +G A + E+PF ++L D MP MDG E
Sbjct: 652 RILLVEDNPVNQLVAKGMLGKLGCEVIVAAHGGEALKLLEEQPFDMVLMDCNMPVMDGYE 711
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+R+ PDL ++ +T A A L+KPF +L
Sbjct: 712 ASRQIRRSGRWPDLPIVALTANAMAEERERCRAAGMNDYLAKPFRREEL 760
>gi|291540403|emb|CBL13514.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Roseburia intestinalis
XB6B4]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ + L + GY ++ +G A + ++E LL+ D++MP +DGI
Sbjct: 6 QTILVCDDDKEIVEAIEIYLQQEGYHILKAYDGEEALEVLKENEVHLLIMDVMMPRLDGI 65
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ A + KPF+ +LV V L
Sbjct: 66 RATLKIREE-SSIPIIILSAKTEDADKILGLNIGADDYVEKPFNPLELVARVKSQLRR 122
>gi|227550019|ref|ZP_03980068.1| two component system response regulator [Corynebacterium
lipophiloflavum DSM 44291]
gi|227077928|gb|EEI15891.1| two component system response regulator [Corynebacterium
lipophiloflavum DSM 44291]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD + L L G+E S +GA A + ++L D+++P M+
Sbjct: 1 MPHRILVVEDDPAINEMLTIVLESEGFETQSVTDGAEAVPVFNDYDPDIVLLDLMLPGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R ++ + ++ +T ++KPF ++
Sbjct: 61 GVDICREIRKV-SAVPIVMLTAKTDTVDVVLGLESGADDYITKPFKPKE 108
>gi|239817851|ref|YP_002946761.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
gi|239804428|gb|ACS21495.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
Length = 249
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +DD+ + L + GY + S + K+R PF + D+++PEMDG
Sbjct: 20 RILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAKLRAGPFDAAILDVMLPEMDGFA 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + D+ ++ +T V + KPF R+LV V +L +
Sbjct: 80 LCREIRKE-SDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILRRQ 136
>gi|170691706|ref|ZP_02882870.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170142990|gb|EDT11154.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 232
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L ED+ +RRF+ AL G V G + L++ D+ +P+ DG
Sbjct: 5 SITVVLIEDEKQIRRFVRTALEDEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ R +L V+ ++ + + L+KPF + +L+ + L +
Sbjct: 65 LDVIRELRG-WSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRR 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|42526008|ref|NP_971106.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
gi|41816058|gb|AAS10987.1| sensor histidine kinase/response regulator [Treponema denticola
ATCC 35405]
Length = 369
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 20/138 (14%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ EDD+ + FL L GY V+ +G +A + + +LL DI++P+++
Sbjct: 1 MN-KVLIVEDDEGIADFLRFELEHEGYSVLHAGDGRTALELFESDTPDILLLDIMLPQLN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF--------------- 105
G+E+ RR + + V+ +T L+KPF
Sbjct: 60 GLEVLRRIRK-TSSVPVIMLTARGETFDKVSGLDSGADDYLAKPFEIGASNLDERLPVTD 118
Query: 106 ---HLRDLVNEVNRLLTI 120
+L N LL+
Sbjct: 119 KGDDFDELAKTFNNLLSR 136
>gi|15839882|ref|NP_334919.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
CDC1551]
gi|308231563|ref|ZP_07412927.2| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu001]
gi|308370423|ref|ZP_07421449.2| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu003]
gi|308371683|ref|ZP_07425819.2| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu004]
gi|308372906|ref|ZP_07430350.2| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu005]
gi|308374017|ref|ZP_07667694.1| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu006]
gi|308379790|ref|ZP_07487588.2| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu011]
gi|308395531|ref|ZP_07669341.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu012]
gi|13880018|gb|AAK44733.1| DNA-binding response regulator RegX3 [Mycobacterium tuberculosis
CDC1551]
gi|308216807|gb|EFO76206.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu001]
gi|308332020|gb|EFP20871.1| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu003]
gi|308335807|gb|EFP24658.1| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu004]
gi|308339412|gb|EFP28263.1| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu005]
gi|308343288|gb|EFP32139.1| putative response regulator receiver domain protein [Mycobacterium
tuberculosis SUMu006]
gi|308363617|gb|EFP52468.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu011]
gi|308367307|gb|EFP56158.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis SUMu012]
gi|323721166|gb|EGB30228.1| two component system sensor protein regX3 [Mycobacterium
tuberculosis CDC1551A]
Length = 230
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED++ + L L K G+E +G +A + ++L D+++P M G ++
Sbjct: 7 VLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDV 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T + ++KP+ R+L+ + +L
Sbjct: 67 CKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121
>gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator
protein [Herbaspirillum seropedicae SmR1]
gi|300075141|gb|ADJ64540.1| cobalt/zinc/cadmium resistance two component response regulator
protein [Herbaspirillum seropedicae SmR1]
Length = 223
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD +L K L ++GY V NGA E+ + L++ D+++P +DG ++
Sbjct: 3 ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGWQV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
DL V+F+T V L KPF +LV + LL
Sbjct: 63 MSALRSKR-DLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRR 117
>gi|295107699|emb|CBL05242.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Gordonibacter pamelaeae
7-10-1-b]
Length = 230
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + + ++L Y V C++G A D + E F L++ D+ +P +DG+
Sbjct: 8 RILIVEDERALCDAIARSLRNLAYSVDCCHDGQEALDLLGVEVFDLVVLDLNLPRIDGMT 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-LTI 120
+ + + D + KV+ ++ V L+KPFHL +L + L L
Sbjct: 68 VLKALRKTDRETKVLILSARGKVFDKVTGLDAGANDYLTKPFHLDELAARIRSLTLRR 125
>gi|239918315|ref|YP_002957873.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|281415488|ref|ZP_06247230.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
gi|239839522|gb|ACS31319.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Micrococcus luteus NCTC 2665]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + R + L +AGYEV + G +A R +++ D+ +P +DGIE
Sbjct: 17 RVLVVDDEKPLARMVATYLERAGYEVALTHTGPAAVQAARVHEPDVMVLDLGLPGLDGIE 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + V+ +T + A ++KPF +R+LV V ++
Sbjct: 77 VCRRVRA-FSECYVLMLTARGDEHHRLEGLAVGADDYITKPFSVRELVARVGAVMRR 132
>gi|291087261|ref|ZP_06345880.2| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|313115944|ref|ZP_07801371.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|291075611|gb|EFE12975.1| DNA-binding response regulator ResD [Clostridium sp. M62/1]
gi|310621708|gb|EFQ05236.1| response regulator receiver domain protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 236
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 17 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLVKEYIDLIISDIMMPVMDGYEL 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 77 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 132
>gi|222107038|ref|YP_002547829.1| two component response regulator [Agrobacterium vitis S4]
gi|221738217|gb|ACM39113.1| two component response regulator [Agrobacterium vitis S4]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L L GY V + ++GASA + E F L++ D+ +PEMDGIE
Sbjct: 2 RILLVEDNKALADGLSAILRGTGYAVDTVSDGASADAAIATENFDLVILDLNLPEMDGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ +T + KPF + + V LL +
Sbjct: 62 VLRCVRARHDKVAILILTARGTPEDKVKGLDLGADDYMIKPFDIGEFEARVRMLLRRQ 119
>gi|104782628|ref|YP_609126.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
L48]
gi|95111615|emb|CAK16336.1| transcriptional regulator of kdp operon [Pseudomonas entomophila
L48]
Length = 231
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ G + L++ D+ +P+
Sbjct: 1 MSQAATLLVIDDEPQIRKFLRISLASQGYKVIEAATGGEGLTQAALNKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A+ D+ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRASEVQKVDALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|67924577|ref|ZP_00517993.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
watsonii WH 8501]
gi|67853576|gb|EAM48919.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera
watsonii WH 8501]
Length = 233
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ ILL +D+ +R + L +G V +N +A++ ++ ++++DI+MPE+D
Sbjct: 5 SATILLVDDEPSVRESVQAYLEYSGNLTVKVASNATNAWEILQTIIPDVIISDIMMPEVD 64
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + + + + V+F+T + L KPF +L VN LL
Sbjct: 65 GYQFLEKLRDDPRFQSIPVVFLTARGMTSDRIKGYNAGCDAYLPKPFDPEELEAIVNNLL 124
Query: 119 TIK 121
+
Sbjct: 125 ERR 127
>gi|301017928|ref|ZP_07182553.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
gi|300399923|gb|EFJ83461.1| response regulator receiver domain protein [Escherichia coli MS
69-1]
Length = 239
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 1 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 61 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|298292594|ref|YP_003694533.1| two component transcriptional regulator [Starkeya novella DSM 506]
gi|296929105|gb|ADH89914.1| two component transcriptional regulator, winged helix family
[Starkeya novella DSM 506]
Length = 251
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+A+DD ++R+ L + + + G+ V ++ A +K+ L++ D+++P+ G++L
Sbjct: 18 ILVADDDSEIRKLLARYMREQGFRVQLASSCAEVNEKIVVHQLDLIILDVMLPDGSGLDL 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ ++ +T L KPF+ R+L V +L
Sbjct: 78 CRDLRAGRSNIPIILLTALQEDVDRIIGLEIGADDYLGKPFNPRELAARVRAVLRR 133
>gi|255523524|ref|ZP_05390492.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255512781|gb|EET89053.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 232
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+++L+ +D++ + + L + G EV G +A + L++ D+++P+M G
Sbjct: 4 NKRVLVIDDENKIVDVIRSYLERDGAEVFEAFEGKNALETFERVNPDLIILDLMLPDMTG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + + ++ +T ++KPF R+L+ + LL
Sbjct: 64 EEICKAIRKK-SRVPIIMLTAKIDEKSVISGLHIGADDYVTKPFSPRELMARIFALLRR 121
>gi|227537308|ref|ZP_03967357.1| two component response regulator [Sphingobacterium spiritivorum
ATCC 33300]
gi|227242811|gb|EEI92826.1| two component response regulator [Sphingobacterium spiritivorum
ATCC 33300]
Length = 234
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ ILL ED+ ++ +I+ L + GY+V+ +G A + VR + L++ DI++P+M+
Sbjct: 1 MNE-ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMN 59
Query: 61 GIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ + + DL V+ +T + +SKPF L +L + LL
Sbjct: 60 GLDVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119
Query: 120 IKN 122
K+
Sbjct: 120 RKS 122
>gi|227543824|ref|ZP_03973873.1| response regulator [Lactobacillus reuteri CF48-3A]
gi|300908892|ref|ZP_07126355.1| response regulator [Lactobacillus reuteri SD2112]
gi|227186201|gb|EEI66272.1| response regulator [Lactobacillus reuteri CF48-3A]
gi|300894299|gb|EFK87657.1| response regulator [Lactobacillus reuteri SD2112]
Length = 237
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ + L + GYE +S +G A K+ P L++ D++MPE+DG+
Sbjct: 10 KILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDGM 69
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +R + D D+ ++ ++ A ++KPF+ +++ V LL
Sbjct: 70 DVIKRVRK-DSDIPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRR 126
>gi|222107067|ref|YP_002547858.1| two component response regulator [Agrobacterium vitis S4]
gi|221738246|gb|ACM39142.1| two component response regulator [Agrobacterium vitis S4]
Length = 229
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL +DD + L + L G++V+S ++GA V +++ D++MP M+
Sbjct: 1 MT-RVLLIDDDLEFTGLLCEYLTDEGFDVLSTDDGAKGLAFVDSGATDIIVLDVMMPIMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + ++ ++ +T +SKP +LV + +L
Sbjct: 60 GVDVLQNIRK-SSEIPIVMLTARGDDKDRITGLDLGADDYVSKPCSPGELVARLRAILRR 118
>gi|170761841|ref|YP_001786289.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169408830|gb|ACA57241.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 223
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD +R+ L K GY+ + +G SA D + +E L+++DI+MP MDG
Sbjct: 3 KVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDVLYKEYIDLIISDIMMPNMDGYT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + ++ ++ IT + + + KP + +++ V LL
Sbjct: 63 LTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRR 119
>gi|166033308|ref|ZP_02236137.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
27755]
gi|166027665|gb|EDR46422.1| hypothetical protein DORFOR_03034 [Dorea formicigenerans ATCC
27755]
Length = 236
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD ++R+F+ L Y+V++ G AY + +++ D+ +P+MDG++
Sbjct: 6 RVLIVEDDKNIRKFIQTILEANDYDVIATETGKEAYSLITSRCPDVVILDLGLPDMDGMK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + ++ ++ ++ ++ ++KPF +L+ + +
Sbjct: 66 ILKEVRA-WSNMPIIVVSARDHEKDKVEALDMGADDYITKPFGTSELLARIRAAIR 120
>gi|104773931|ref|YP_618911.1| two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423012|emb|CAI97698.1| Two-component system, response regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 222
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 59/112 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ + R L A+ K+GY+V S NG A D V++ P+ +++ DI+MP +G++
Sbjct: 2 KILLAEDEAQLNRVLTVAMQKSGYDVDSVFNGQEAVDAVKKHPYDVIIMDIMMPVKNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ +M +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRSTGDKTYIMMLTAKSEIDDKVTGLDVGADDYLTKPFSLKELLVRLR 113
>gi|146299834|ref|YP_001194425.1| histidine kinase [Flavobacterium johnsoniae UW101]
gi|146154252|gb|ABQ05106.1| histidine kinase [Flavobacterium johnsoniae UW101]
Length = 1373
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED++++ F+ L Y V+ +G A + + +E L++TD++MPEMDG
Sbjct: 1123 KKTVLVIEDNEEVLSFVYDIL-YHDYRVLKFTDGIHALEYMEKEIPDLIVTDVMMPEMDG 1181
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + + V+ +T ++ + + +SKPF + +L + LL+
Sbjct: 1182 FELCTILKTNQNTNHIPVILLTAKSSTLNRIEGLSTGADAYISKPFSIEELKLTIANLLS 1241
Query: 120 IK 121
K
Sbjct: 1242 AK 1243
>gi|238799012|ref|ZP_04642473.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
43969]
gi|238717153|gb|EEQ09008.1| Transcriptional regulatory protein baeR [Yersinia mollaretii ATCC
43969]
Length = 241
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ + + L+ L AGY NG VR+ P +++L D+++P DG
Sbjct: 13 SGTVLIVEDEPKLGQLLVDYLQAAGYRTQWITNGVEVVAAVRQAPPAIILLDLMLPGSDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R D+ +M +T + KP+ R++V V +L
Sbjct: 73 ITICREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 130
>gi|320194319|gb|EFW68950.1| Putative two-component system response regulator YedW [Escherichia
coli WV_060327]
Length = 260
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|309791481|ref|ZP_07685985.1| signal transduction histidine kinase [Oscillochloris trichoides
DG6]
gi|308226478|gb|EFO80202.1| signal transduction histidine kinase [Oscillochloris trichoides
DG6]
Length = 495
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 2/115 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L L GY + ++G A ++R L+L D++MP+MDG E+
Sbjct: 7 ILVVDDQPRSQMALSSLLEPEGYRLAFASSGPEALAQMRLIAPDLILLDVMMPDMDGFEV 66
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R + V+ +T ++KPF+ +L + +
Sbjct: 67 CERIRADPAFATIPVVMVTALDDQESLLRGIRSGADDFVTKPFNRTELRARIRTI 121
>gi|298385042|ref|ZP_06994601.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298262186|gb|EFI05051.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1312
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ +D+ D+ F KAL + +V+ ++G A V+ ++++D++MP M+G
Sbjct: 1057 SYTILVVDDNSDLTDFFSKALSEYFKKVLIASDGVEALQLVKSYTPDIIVSDVMMPRMNG 1116
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL + E + ++ +T L+KPF + L+ + L
Sbjct: 1117 YELCKGIKEDLAVSHIPIILLTARDDKESQISGYKNGADGYLTKPFEIEMLMELIRNRLK 1176
Query: 120 IK 121
+
Sbjct: 1177 NR 1178
>gi|315499028|ref|YP_004087832.1| two component transcriptional regulator, winged helix family
[Asticcacaulis excentricus CB 48]
gi|315417040|gb|ADU13681.1| two component transcriptional regulator, winged helix family
[Asticcacaulis excentricus CB 48]
Length = 226
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAEDD D+ R L +L AGY V +G A+ EP+ ++ D+ +P++DG+
Sbjct: 2 RILLAEDDPDLSRQLKASLQDAGYVVDHAPDGEEAHFLGDTEPYDCVILDLGLPKIDGVS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T A + L+KPFH +L+ + L+
Sbjct: 62 VLERWRRDGKATPVLILTARGAWSDKVSGFDAGADDYLTKPFHTEELLARLRALVRR 118
>gi|209573944|gb|ACI62910.1| two component response regulator CusR2 [Acidithiobacillus
thiooxidans]
Length = 227
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 57/120 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ILL EDD + + AL A Y V +G +A + + + +L D+ +P++DG
Sbjct: 7 KMRILLVEDDRMIGEAISVALRDAAYAVDWTRDGETALQAITNQEYQAILLDLGLPKLDG 66
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R + DL ++ I+ A++ + L KPF + +L+ + ++ +
Sbjct: 67 CTVLQRVRAMGSDLPIIIISARDALSDRIEGLDLGADDYLVKPFAMDELLARLRAIIRRQ 126
>gi|37677144|ref|NP_937540.1| putative two component response regulator transcription regulator
protein [Vibrio vulnificus YJ016]
gi|37201689|dbj|BAC97510.1| putative two component response regulator transcription regulator
protein [Vibrio vulnificus YJ016]
Length = 231
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +L K L +AGY V +G + + + L++ D+++P ++G +
Sbjct: 2 KLLIIEDEKKTGTYLRKGLSEAGYLVNLACDGVDGLYQATSQRYDLIVLDVMLPHLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D V+ +T V + KPF +L+ + +L +
Sbjct: 62 VLRALRSSQVDTPVILLTARDQVEDRVKGLELGADDYIVKPFAFVELLARIRTVLKRQ 119
>gi|88802668|ref|ZP_01118195.1| putative two component system response regulator [Polaribacter
irgensii 23-P]
gi|88781526|gb|EAR12704.1| putative two component system response regulator [Polaribacter
irgensii 23-P]
Length = 225
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+LLAED+ + + ++L + V NG A ++E ++L+ DI+MP DG
Sbjct: 3 NIKVLLAEDEASLGMIVKESLESRNFVVFLAKNGQEALAIYQKEKPNILVLDIMMPIKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA+ E + + ++F+T + + L KPF + +L+ +N LL
Sbjct: 63 FTLAKEIREENKSIPIIFLTAKSQTKDVLEGFKFGGNDYLKKPFSIEELIVRMNALLDR 121
>gi|296125343|ref|YP_003632595.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Brachyspira murdochii DSM 12563]
gi|296017159|gb|ADG70396.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Brachyspira murdochii DSM 12563]
Length = 444
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E
Sbjct: 3 KILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIETVYKGGIDLVITDLKMPEKTGEE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ E D + V+ +TG V + ++KPF+L ++ + R L KN
Sbjct: 63 FLKDILEFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARALESKN 121
>gi|127514347|ref|YP_001095544.1| two component transcriptional regulator [Shewanella loihica PV-4]
gi|126639642|gb|ABO25285.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 242
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ D+ R + L +EV N A ++R + F LLL D ++ + DG+
Sbjct: 14 RRILLVEDEPDLARLIRLNLESLQHEVTQVNTLNQARQQLRSKCFDLLLLDRMLSDGDGL 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ + L M IT + A L KPF + +L V LL
Sbjct: 74 TLCQQLRQEGKSLPCMMITARDSEADIVLGLESGADDYLVKPFSVLELRARVKALLRR 131
>gi|119718004|ref|YP_924969.1| response regulator receiver [Nocardioides sp. JS614]
gi|119538665|gb|ABL83282.1| response regulator receiver [Nocardioides sp. JS614]
Length = 297
Score = 139 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
++ ED+ ++ + L +AGYEV ++G A D RE +++ D+ +P +DGIE+
Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D V+ +T + + ++KPF R+L+ + +L
Sbjct: 127 RRLR-TFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRR 180
>gi|329961374|ref|ZP_08299497.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057]
gi|328531851|gb|EGF58674.1| putative response regulator ArlR [Bacteroides fluxus YIT 12057]
Length = 225
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + +L K + V + + +A DK+ + + +L DI++P G++
Sbjct: 2 KILIVEDEQGLRETIRTSLLKEKFVVETAADYFAALDKINDYDYDCILLDIMLPGGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R L V+ I+ ++ D L+KPFHL +L V L+ +
Sbjct: 62 LLRELKRLHRSDSVLIISAKDSLDDKVDGLELGADDYLTKPFHLAELNARVKSLIRRR 119
>gi|323692686|ref|ZP_08106915.1| two-component system response regulator [Clostridium symbiosum
WAL-14673]
gi|323503240|gb|EGB19073.1| two-component system response regulator [Clostridium symbiosum
WAL-14673]
Length = 236
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN ++IL A+DD ++R + L G+EV+ +NG A +K L++ D++MP
Sbjct: 3 MNTERKRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMP 61
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI + + ++F+T + L+KPF +LV V +
Sbjct: 62 GKSGILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|282899741|ref|ZP_06307704.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Cylindrospermopsis raciborskii CS-505]
gi|281195356|gb|EFA70290.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Cylindrospermopsis raciborskii CS-505]
Length = 368
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D D + L GY + S ++GA+A K + P L+L D++MPEMDG E
Sbjct: 11 RILVVDDRRDNLILVQTLLESEGYAIDSVSDGATALQKTVQSPPDLILLDVMMPEMDGYE 70
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + ++ IT F + + + KPF +L+ V LL +K
Sbjct: 71 VTRTIRSYTNIDYIPILLITAF-DESSVVEGLDAGADDFIRKPFDTNELLARVRCLLRLK 129
>gi|269794287|ref|YP_003313742.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269096472|gb|ACZ20908.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 244
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + + LG G+ +G S + ++ D+++P +DG+E+
Sbjct: 17 ILIVEDEPAIATAIAQRLGAEGWRTEVARDGLSGVEAAARMLPDAVVLDVMLPGIDGLEV 76
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR P + ++ +T ++KPF +R+LV + LL
Sbjct: 77 CRRIQAERP-VPILMLTARDDETDMLIGLGVGADDYMTKPFSMRELVARLKALLRR 131
>gi|210610878|ref|ZP_03288631.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
gi|210152273|gb|EEA83280.1| hypothetical protein CLONEX_00821 [Clostridium nexile DSM 1787]
Length = 224
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 56/114 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L L + Y V + +G A + + + + ++ DI+MP++DGI
Sbjct: 2 RLLLAEDEKPLSKALTAILERNNYSVDAVYDGEEALEYLDADNYDGVILDIMMPKVDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ + + V+ +T + V L+KPFH ++L+ + +
Sbjct: 62 VLKTIRNRGNLIPVLLLTAKSEVDDKVAGLDAGANDYLAKPFHSKELLARIRAM 115
>gi|218247529|ref|YP_002372900.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8801]
gi|257061135|ref|YP_003139023.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8802]
gi|218168007|gb|ACK66744.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8801]
gi|256591301|gb|ACV02188.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8802]
Length = 395
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +L+ +D D R L L + GY+V NG A + V + P ++L DI M
Sbjct: 5 MTKDKGNLLVVDDTPDNLRLLSAMLSEQGYKVRKALNGQIALNTVSQVPPDVILLDINMA 64
Query: 58 EMDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
M+G E+ + + D+ V+FI+ V + ++KPF +++ +
Sbjct: 65 GMNGYEVCKILKSDQETQDIPVIFISALDDVLDKVKAFEVGGVDYITKPFQCEEVIARIE 124
Query: 116 RLLTIK 121
LTI+
Sbjct: 125 NQLTIQ 130
>gi|182419626|ref|ZP_02950871.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237665786|ref|ZP_04525774.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376516|gb|EDT74093.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237658733|gb|EEP56285.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 249
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ ++ + L GY+V NG + V +E L++ DI+MP +DG ++
Sbjct: 23 VLIIDDEVEIVELMEVYLVNEGYKVFKAYNGNDGINIVDKEKIDLIVLDIMMPGIDGFQI 82
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ I+ + + + KPF+ + + V +
Sbjct: 83 CMKIRKDY-NIPIIMISAKSQDMDKIQGLSVGADDYMVKPFNPMEFIARVKSQIRR 137
>gi|78063373|ref|YP_373281.1| two component transcriptional regulator [Burkholderia sp. 383]
gi|77971258|gb|ABB12637.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. 383]
Length = 221
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A +R E F L++ D +P MDG
Sbjct: 2 RILVVEDDAEIGAAIRNRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|308271995|emb|CBX28603.1| hypothetical protein N47_G39270 [uncultured Desulfobacterium sp.]
Length = 491
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 55/114 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R L GY V GA + +R+ F ++L D++MPEM G ++
Sbjct: 15 ILVVDDEVRIRDACRLVLEDCGYGVCVAATGAEGLELIRDRHFDIILLDLMMPEMSGFDV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ L PD ++ ITG+A + + D+ + KPF L + + +
Sbjct: 75 LAKVKALHPDTVIIVITGYATLEHSLDAMKKGAFDFIPKPFTPEHLRATIAKAI 128
>gi|291567579|dbj|BAI89851.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
Length = 1778
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AED++ L LG GY ++ +G A D + E +L+L DI MP +DG+E
Sbjct: 1661 ILIAEDNEANIMSLSSYLGAKGYRLIIAKDGQQAIDLAQSESPNLILMDIQMPGIDGLEA 1720
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R ++ + ++ +T A ++KP L+ L ++ +L +
Sbjct: 1721 INRIRQITTMSQVPIIALTALAMTGDREKCLEAGANDYVAKPVKLKQLNAKIQEILDL 1778
>gi|291618073|ref|YP_003520815.1| BaeR [Pantoea ananatis LMG 20103]
gi|291153103|gb|ADD77687.1| BaeR [Pantoea ananatis LMG 20103]
gi|327394471|dbj|BAK11893.1| transcriptional regulatory protein BaeR [Pantoea ananatis AJ13355]
Length = 235
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + +I L + Y +G D V + P L+L D+++P DG+ L
Sbjct: 10 ILVVEDEPKLAQLMIDYLQASNYRTHHLAHGNEVLDYVNQTPPDLILLDLMLPGKDGLTL 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D +L ++ +T + KPF R++V V +L
Sbjct: 70 CREIR-RDSELPIIMVTARTEEIDRLLGLEIGADDYVCKPFSPREVVARVKTILRR 124
>gi|224538526|ref|ZP_03679065.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
14838]
gi|224519864|gb|EEF88969.1| hypothetical protein BACCELL_03420 [Bacteroides cellulosilyticus DSM
14838]
Length = 1370
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++L+ EDD+++R+++ + L + + C NG A + ++ L+++DI+MPEMDG
Sbjct: 1104 KNRVLVVEDDEEIRKYICRELAS-DFHMSECTNGKEALAMILKKEPDLIISDIMMPEMDG 1162
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L ++ + + ++ +T + N + + KPF + L L+
Sbjct: 1163 LTLCKKIKQNVTINHIPIILLTAKSREEDNLEGLNMGADAYIVKPFSIEILRKTAINLIK 1222
Query: 120 IK 121
+
Sbjct: 1223 SR 1224
>gi|242280762|ref|YP_002992891.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
gi|242123656|gb|ACS81352.1| multi-sensor hybrid histidine kinase [Desulfovibrio salexigens DSM
2638]
Length = 1670
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KILL ED++ ++ + L G +V +NG A + + EP+SL++ DI MPEMDG
Sbjct: 1331 SPKILLVEDNELNQQVARRMLEGMGLDVDVADNGRKALEALESEPYSLVIMDIQMPEMDG 1390
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ +R E +L ++ +T A S + L+KP +L + + L
Sbjct: 1391 LTASRIIRSDERYRNLPILAMTAHAMPGDREKSFEAGMNEHLTKPIDPEELKRALVKYLN 1450
Query: 120 IKN 122
++
Sbjct: 1451 AED 1453
Score = 57.5 bits (139), Expect = 6e-07, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE----EPFSLLLTDIVMPEMDG 61
L+ E + R F+ + K+G V+ + +SA +++ E + L+L + +M
Sbjct: 1187 LVIEGNMMAREFIRSTMEKSGITVMVDSTASSALERLAESIDVDGLGLILVSGKIQDMHV 1246
Query: 62 IELARRATELDP--DLKVMFIT-GFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+E+ R + + ++ ++ + ++ +++P L +
Sbjct: 1247 LEVVERIRNMPKLMHVPIILMSPVNMDESFRKEAALVGVDGFVTRPVSRLSLYAALQ 1303
>gi|167757753|ref|ZP_02429880.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
gi|167664635|gb|EDS08765.1| hypothetical protein CLOSCI_00084 [Clostridium scindens ATCC 35704]
Length = 221
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ DM+ +++ + G+ ++ ++G A ++ P L + DI+MP +DG +
Sbjct: 4 VLVAEDEKDMQDIIVEYMKGGGHSCITADDGIDAVTILKNTPVDLAILDIMMPHLDGFSV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ A E+ ++ ++F+T ++KPF + L+ +VN LL +
Sbjct: 64 CKIAREMY-NIPIIFLTAKEGEDDKLKGYDIGADDYMTKPFSPKVLLAKVNALLRRSS 120
>gi|220918235|ref|YP_002493539.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956089|gb|ACL66473.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 238
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDD+ + + L G+ V +G + + +++ D+++P G+E
Sbjct: 10 RVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R P + ++ +T A L+KPF R+L+ + L+
Sbjct: 70 VCRELRARLP-VPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRR 125
>gi|166032567|ref|ZP_02235396.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
27755]
gi|166026924|gb|EDR45681.1| hypothetical protein DORFOR_02282 [Dorea formicigenerans ATCC
27755]
Length = 231
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 53/118 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + + + L + V +NGA A D ++ F L+L DI+MP+ DG +
Sbjct: 6 VLIIDDEPSILKAVSMTLKQEHIAVTCADNGALALDILKANTFDLILLDIIMPDQDGFSI 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ V+ ++G + ++KPF LV+++ ++ N
Sbjct: 66 LKVIRSSQNYTPVILLSGRGEDSAQVKGLELGADDYITKPFSKTVLVSKIRAMVRRTN 123
>gi|164686210|ref|ZP_02210240.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
16795]
gi|164601812|gb|EDQ95277.1| hypothetical protein CLOBAR_02648 [Clostridium bartlettii DSM
16795]
Length = 231
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L GY+V +G A D + E L+L DI+MP++DGI+
Sbjct: 4 ILVVDDDKEIVESIEIYLRNEGYKVFKAYDGLEALDILTNEEIHLILMDIMMPKLDGIKA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ ++ ++ ++KPF+L +L+ V L
Sbjct: 64 TIKIRQE-KNIPIILVSAKGEDTDKILGLNIGADDYITKPFNLLELIARVKSNLRR 118
>gi|163742633|ref|ZP_02150019.1| response regulator [Phaeobacter gallaeciensis 2.10]
gi|161384218|gb|EDQ08601.1| response regulator [Phaeobacter gallaeciensis 2.10]
Length = 422
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+
Sbjct: 18 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 77
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRL 117
E R D + +T + L+KP +L + R+
Sbjct: 78 EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 137
Query: 118 LTIK 121
L ++
Sbjct: 138 LRMQ 141
>gi|150005501|ref|YP_001300245.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
gi|254884052|ref|ZP_05256762.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|294778703|ref|ZP_06744122.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|319640726|ref|ZP_07995439.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
gi|149933925|gb|ABR40623.1| two-component system response regulator [Bacteroides vulgatus ATCC
8482]
gi|254836845|gb|EET17154.1| two-component system response regulator [Bacteroides sp. 4_3_47FAA]
gi|294447359|gb|EFG15940.1| response regulator receiver domain protein [Bacteroides vulgatus
PC510]
gi|317387538|gb|EFV68404.1| two-component system response regulator [Bacteroides sp. 3_1_40A]
Length = 225
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD ++R ++L K Y V + +A K+ + + +L DI++P+ G++
Sbjct: 2 KILLVEDDANLREVTQRSLEKERYVVEIAADYRTALQKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E+ V+ ++ ++ L KPFHL +L + ++
Sbjct: 62 LLEKLKEMHKRENVIILSAKDSIEDKVLGLELGADDYLPKPFHLVELNARIKSVIRR 118
>gi|91213879|ref|YP_543865.1| putative response regulator [Escherichia coli UTI89]
gi|91075453|gb|ABE10334.1| putative response regulator [Escherichia coli UTI89]
Length = 240
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 2 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 61
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 62 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 121
Query: 119 TIK 121
+
Sbjct: 122 RRQ 124
>gi|89055622|ref|YP_511073.1| response regulator receiver modulated diguanylate cyclase
[Jannaschia sp. CCS1]
gi|88865171|gb|ABD56048.1| response regulator receiver modulated diguanylate cyclase
[Jannaschia sp. CCS1]
Length = 464
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D R + L A Y V NGA+A RE L+L D++MP+M
Sbjct: 1 MVGRILVVDDVATNRIVMKVKLTAACYSVDQAENGAAALKAARETKPDLILLDVMMPDMS 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R D+ V+ IT A D L+KP L+ V LL
Sbjct: 61 GLDVCRALKADPETADIPVVLITALFDQAAKMDGLEAGADDFLTKPVEEVTLLARVRSLL 120
Query: 119 TIKN 122
+ +
Sbjct: 121 RVSD 124
Score = 45.1 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 45 EPFSLLLTDIVMPEMD-GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVL 101
+ + + + + + G+ L ++ I + VL
Sbjct: 199 NDPDVFVISVDLAQRNEGLRLLSDLRSRPGTRHSAIVMILPEGDSERAAIALDLGANDVL 258
Query: 102 SKPFHLRDLVNEVNRLLTIK 121
PF ++L ++ L K
Sbjct: 259 HDPFDAQELAIRISAQLDRK 278
>gi|78357398|ref|YP_388847.1| two component Fis family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78219803|gb|ABB39152.1| two component transcriptional regulator, Fis family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 465
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ ILL EDD+ + L +AL GY V S + R+ F L+LTD+++P M
Sbjct: 1 MSEHILLIEDDNAFQEMLSEALRSRGYAVSSASRAEEGISMARQHDFDLILTDVMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E + E P ++ +T ++ L ++ SKPF L++L V R L
Sbjct: 61 GVEAIPQLREAAPGSDIIVMTAYSTRELALEAIRLGAYDFFSKPFSLKELDIVVRRALEK 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|319934752|ref|ZP_08009197.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
gi|319810129|gb|EFW06491.1| DNA-binding response regulator [Coprobacillus sp. 29_1]
Length = 231
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ ED+ ++ + L GY V NNG + + + L + DI+MP MD
Sbjct: 1 MEYNVLVVEDEIEICDAIEIYLKTQGYHVYKANNGQEGLNIISNQTIHLAIVDIMMPIMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ + E D ++ ++ + ++KPF +L+ V+ L
Sbjct: 61 GIQMTMKVRENY-DFPIIMLSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVSSQLRR 119
>gi|293371358|ref|ZP_06617795.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|294810799|ref|ZP_06769445.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|315919426|ref|ZP_07915666.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|292633718|gb|EFF52273.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides ovatus SD CMC 3f]
gi|294441987|gb|EFG10808.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Bacteroides xylanisolvens SD CC 1b]
gi|313693301|gb|EFS30136.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 1358
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224
Query: 121 K 121
+
Sbjct: 1225 Q 1225
>gi|159038478|ref|YP_001537731.1| two component transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917313|gb|ABV98740.1| two component transcriptional regulator, winged helix family
[Salinispora arenicola CNS-205]
Length = 238
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/106 (30%), Positives = 50/106 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILLAEDD +RR + ++L GY VV+ +G A VR + LL+ D++MP +DG+
Sbjct: 11 TILLAEDDPAIRRAVEQSLLLEGYHVVATGDGLEAIAAVRRDNPDLLVLDVMMPGLDGLT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ R ++ +T V+ L KPF +
Sbjct: 71 VCRVLRAQGDWTPILVLTARTQVSDRVAGLDAGADDYLVKPFEPEE 116
>gi|197116776|ref|YP_002137203.1| response regulator [Geobacter bemidjiensis Bem]
gi|197086136|gb|ACH37407.1| response regulator [Geobacter bemidjiensis Bem]
Length = 204
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D + L K L K YEV+ N+G A + E L+L D++MPEMDG
Sbjct: 3 KKKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENRPDLILLDVMMPEMDG 61
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R D+ V+F+T + LSKP + L + V L
Sbjct: 62 LEVCRILKDDSRYRDIPVIFVTALSDEVDESRGFKAGAVDFLSKPVNPVILSHRVAVHLE 121
Query: 120 IKN 122
+++
Sbjct: 122 LQS 124
>gi|123440486|ref|YP_001004480.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332159711|ref|YP_004296288.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|122087447|emb|CAL10228.1| two component system response regulatory protein [Yersinia
enterocolitica subsp. enterocolitica 8081]
gi|318603811|emb|CBY25309.1| copper-sensing two-component system response regulator CpxR
[Yersinia enterocolitica subsp. palearctica Y11]
gi|325663941|gb|ADZ40585.1| DNA-binding transcriptional regulator CpxR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330858935|emb|CBX69297.1| transcriptional regulatory protein cpxR [Yersinia enterocolitica
W22703]
Length = 232
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + + LLL +MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDI-MMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSDLDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|218682484|ref|ZP_03530085.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium etli CIAT 894]
Length = 430
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 1/122 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN KILL +D++++RR +AL +G+ V + +NG + + ++++DI MP M
Sbjct: 1 MNDAKILLVDDEEELRRSTAQALELSGFSVETFSNGDHVLELIGYSFPGVVVSDIRMPGM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L ++ E+DP++ V+ +TG V L + + KPF L + R +
Sbjct: 61 DGMTLMQKIREIDPEVPVILVTGHGDVQLAVKAMREGAYDFIEKPFTPEMLAGVIRRAME 120
Query: 120 IK 121
+
Sbjct: 121 RR 122
>gi|148241662|ref|YP_001226819.1| two-component system response regulator [Synechococcus sp. RCC307]
gi|147849972|emb|CAK27466.1| Two-component system response regulator [Synechococcus sp. RCC307]
Length = 240
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
++LL +D+ + FL L GY V N+GAS +R EP L+L D +P+ G+
Sbjct: 9 RLLLVDDEPKLTEFLRMELEVEGYAVQIANDGASGLIALRGEPAPDLVLLDWNLPDFTGL 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ RR + V+ +TG+ V ++ L KPF + +L+ + L N
Sbjct: 69 DICRRIRSTGMSVPVLMLTGYDEVKDKVEALDAGVDDYLVKPFSIEELLARLRALQRRSN 128
>gi|56695168|ref|YP_165515.1| DNA-binding response regulator PetR [Ruegeria pomeroyi DSS-3]
gi|56676905|gb|AAV93571.1| DNA-binding response regulator PetR [Ruegeria pomeroyi DSS-3]
Length = 233
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +DD+ +R L K L + G+ V + + A + F L++ D++MP DG
Sbjct: 5 DAHLLIVDDDERIRDLLKKFLMRHGFLVTAARDAEHARRILSGLDFDLIVMDVMMPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L R + ++ +T L+KPF R+L+ +N +L
Sbjct: 65 VSLTRALRQTLS-TPILLLTARGETEHRIAGLEAGADDYLAKPFEPRELLLRINAILRR 122
>gi|238783966|ref|ZP_04627982.1| Transcriptional regulator in 2-component system [Yersinia
bercovieri ATCC 43970]
gi|238798834|ref|ZP_04642303.1| Transcriptional regulator in 2-component system [Yersinia
mollaretii ATCC 43969]
gi|238715074|gb|EEQ07070.1| Transcriptional regulator in 2-component system [Yersinia
bercovieri ATCC 43970]
gi|238717342|gb|EEQ09189.1| Transcriptional regulator in 2-component system [Yersinia
mollaretii ATCC 43969]
Length = 232
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A + + LLL +MP +GI
Sbjct: 2 HKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDI-MMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|311897138|dbj|BAJ29546.1| putative two-component system response regulator [Kitasatospora
setae KM-6054]
Length = 225
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + L + L G+ V ++G E + +++ DI++P ++G
Sbjct: 2 RVLVVEDERRLAATLQRGLRAEGFAVDLAHDGEEGLWLATEHDYDVIVLDIMLPRLNGYR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D ++ +T ++ LSKPF LV + L+
Sbjct: 62 VCSRLRAAGDDTPILMLTAKDGELDEAEALDTGADDFLSKPFSYVVLVARLRALVRR 118
>gi|254787196|ref|YP_003074625.1| BaeR family transcriptional regulator [Teredinibacter turnerae
T7901]
gi|237684514|gb|ACR11778.1| transcriptional regulatory protein BaeR [Teredinibacter turnerae
T7901]
Length = 232
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ ++ + L AG+ NG + ++L D+++P +
Sbjct: 1 MSATVLIVEDEAELALLMRDYLLAAGFHCEIIGNGLEVERWLSTNTADIILLDLMLPGKN 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+++ R L ++ +T + KPF R++V V +L
Sbjct: 61 GLDICRELRTQAQFKTLPIIMVTAKVEEIDRLLGLELGADDYVCKPFSPREIVARVKAVL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|296121739|ref|YP_003629517.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
gi|296014079|gb|ADG67318.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
Length = 235
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + K+LL ED+ + L L K G+EV S ++G + + L++ D+++P +
Sbjct: 1 MAKPKVLLIEDERSLIDILTYNLEKEGFEVTSASDGQDGLRRAQAMTPDLVILDLMLPVI 60
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E+ R+ P+ +++ +T A ++KPF ++ L++ + L
Sbjct: 61 DGLEVCRQLRSDPKLPNCRILMLTARAEEVDEIVGFNMGADDYVAKPFKVKPLIHRIKAL 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|229172679|ref|ZP_04300237.1| DNA-binding response regulator [Bacillus cereus MM3]
gi|228610811|gb|EEK68075.1| DNA-binding response regulator [Bacillus cereus MM3]
Length = 218
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+DD +R + L + G++ +G A K+ E +++ DI+MP MDG ++
Sbjct: 2 DDDPHIRELVSVFLEREGFQTYEAIDGLDALKKIDEVKVDMVILDIMMPNMDGFDVCFEL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D+ ++ +T + L KPF +LV V LL
Sbjct: 62 RKYY-DIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKR 112
>gi|289810865|ref|ZP_06541494.1| transcriptional regulator [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 147
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 62/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L++ DI MP MDG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEMYALMVLDINMPGMDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|210617024|ref|ZP_03291359.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
gi|210149547|gb|EEA80556.1| hypothetical protein CLONEX_03581 [Clostridium nexile DSM 1787]
Length = 233
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L + GYEV+ +G A +++E LL+ D++MP +DGI
Sbjct: 5 KILVCDDDKEIVEAIEIYLTQEGYEVLKAYDGEEAIQTLKKEHVDLLIMDVMMPRLDGIR 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + L ++ ++ + A ++KPF+ +LV L
Sbjct: 65 ATLKIREENS-LPIIILSAKSEDADKILGLNIGADDYVTKPFNPLELVARAKSQLRR 120
>gi|254448684|ref|ZP_05062142.1| two-component system regulatory protein [gamma proteobacterium
HTCC5015]
gi|198261692|gb|EDY85979.1| two-component system regulatory protein [gamma proteobacterium
HTCC5015]
Length = 244
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED D+ + L G+ +G SA + E P+ ++ DI++P DG E+
Sbjct: 20 ILIVEDHQDLAANIGDYLEAGGFAPDFAADGPSAVNLAAENPYDAIVLDIMLPGFDGYEV 79
Query: 65 ARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + ++ +T + L KPF +++L + +
Sbjct: 80 CRRLRQQVGLSVPIIMLTARDQLDDKILGFEQGADDYLIKPFEMKELEARLKAHIRR 136
>gi|190572846|ref|YP_001970691.1| putative two-component system response regulator transcriptional
regulator [Stenotrophomonas maltophilia K279a]
gi|190010768|emb|CAQ44377.1| putative two-component system response regulator transcriptional
regulatory protein [Stenotrophomonas maltophilia K279a]
Length = 248
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 139
>gi|189183991|ref|YP_001937776.1| response regulator PleD [Orientia tsutsugamushi str. Ikeda]
gi|189180762|dbj|BAG40542.1| putative response regulator protein [Orientia tsutsugamushi str.
Ikeda]
Length = 489
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D + R+ L L Y V + NG A + ++L DIVMP MD
Sbjct: 1 MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL + + + V+ IT + + + L+KP L V L+
Sbjct: 61 GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RMK 123
>gi|167565733|ref|ZP_02358649.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
EO147]
gi|167572829|ref|ZP_02365703.1| DNA-binding response regulator IrlR [Burkholderia oklahomensis
C6786]
Length = 227
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AG+ +G + + E + L++ D+++P DG
Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFIADWVEDGVTGLHQAETEDYDLIILDVMLPGHDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + KPF +LV V +L
Sbjct: 62 VLERLRRERS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>gi|156740320|ref|YP_001430449.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus castenholzii DSM 13941]
gi|156231648|gb|ABU56431.1| response regulator receiver modulated metal dependent
phosphohydrolase [Roseiflexus castenholzii DSM 13941]
Length = 331
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+A+D+ MR +++ + GY ++ NG A + E L+L D+ MP+ D
Sbjct: 1 MAAKILVADDNPAMREAIVRFVEAEGYVALAARNGREALNLALAELPDLVLLDVTMPDYD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V +T A L+KPF R L + L
Sbjct: 61 GYEVCRRLKADPRTALIPVTMLTVLDAPEHRWRGIEAGADDFLTKPFDERLLRARIQSQL 120
Query: 119 TIK 121
K
Sbjct: 121 RTK 123
>gi|300769838|ref|ZP_07079718.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
gi|300763289|gb|EFK60105.1| response regulator [Sphingobacterium spiritivorum ATCC 33861]
Length = 234
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ ILL ED+ ++ +I+ L + GY+V+ +G A + VR + L++ DI++P+M+
Sbjct: 1 MNE-ILLVEDEQNVAELVIQGLEEDGYKVIHAMDGLKALEIVRTKAVDLVILDILLPQMN 59
Query: 61 GIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ + + DL V+ +T + +SKPF L +L + LL
Sbjct: 60 GLDVCKAIRDSGYTDLPVLMLTALGSPENVVLGLDNGADDYMSKPFKLIELKARIRTLLR 119
Query: 120 IKN 122
K+
Sbjct: 120 RKS 122
>gi|257059714|ref|YP_003137602.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 8802]
gi|256589880|gb|ACV00767.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 8802]
Length = 379
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + L + L ++GYEV+ NNG K +E L++ D VMP ++
Sbjct: 1 MAQ-ILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLN 59
Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ + P+L + +T +V L KP + +L+ V
Sbjct: 60 GLEVCSQVK-TFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSG 118
Query: 118 LTI 120
L +
Sbjct: 119 LRL 121
>gi|254425350|ref|ZP_05039068.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196192839|gb|EDX87803.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 243
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEM 59
Q IL+AEDD+ R L+K+L A Y V++ +G +A + + L++ D++MP++
Sbjct: 7 KQTILIAEDDERTRTALVKSLEAADYIVIAAADGQAALQCFQTASDIIDLVVLDVMMPKL 66
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ +R ++ ++ T + + + KPF ++L+ + +L
Sbjct: 67 DGFQVCQRLRA-TSNVPIIMATVLGSSSDRVTGLEIGANDYIVKPFSTKELIARIRSILR 125
Query: 120 I 120
Sbjct: 126 R 126
>gi|153011101|ref|YP_001372315.1| two component transcriptional regulator [Ochrobactrum anthropi ATCC
49188]
gi|151562989|gb|ABS16486.1| two component transcriptional regulator, winged helix family
[Ochrobactrum anthropi ATCC 49188]
Length = 233
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R+ L L GY VV NG A +++ E +++ D+ +P+ DG
Sbjct: 7 KILVVDDEPAIRKLLRVGLTTEGYTVVEAVNGGEADERITTEKPDIVVLDLGLPDTDGHA 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L +R E L ++ ++ A + + KPF +++L + L +
Sbjct: 67 LLQRWRETGVTLPILVLSSRTDEAGIVRALEEGADDYVPKPFGMKELAARLRVALRHR 124
>gi|159898887|ref|YP_001545134.1| two component, sigma54 specific, Fis family transcriptional
regulator [Herpetosiphon aurantiacus ATCC 23779]
gi|159891926|gb|ABX05006.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Herpetosiphon aurantiacus ATCC 23779]
Length = 385
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 61/120 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +++L+ +D+ ++R L +AL GY+VV N + +P +++ D+ + MD
Sbjct: 1 MTKRLLVIDDEANLRWVLSEALSDQGYDVVVAANANDGLAAMSRQPADVVILDLKLKGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ R E P++ V+ +T + VA ++ A L KPF L ++ ++ R L
Sbjct: 61 GLATLARLRERWPEVVVLILTAYGTVASAVEAMQLGAADYLRKPFDLEEIGFKLQRALER 120
>gi|46190306|ref|ZP_00206421.1| COG0745: Response regulators consisting of a CheY-like receiver
domain and a winged-helix DNA-binding domain
[Bifidobacterium longum DJO10A]
Length = 248
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I + +DD + L L G++ V+C +G A + L+L D+++P +DG E
Sbjct: 11 TIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ARR ++ ++ +T + + KPF + +L+ +
Sbjct: 71 VARRIRA-TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 122
>gi|310642055|ref|YP_003946813.1| response regulators consisting of a chey-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
gi|309247005|gb|ADO56572.1| Response regulators consisting of a CheY-like receiver domain
protein and a winged-helix DNA-binding domain protein
[Paenibacillus polymyxa SC2]
Length = 235
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R+ + L GY+ + G ++ + L++ D+ +P+M
Sbjct: 1 MNKPFILVVEDDKPIRKLITTTLETQGYKYHTAETGEASILEAVSRQPDLMILDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+++ ++ E ++ ++ ++ + D+ L+KPF + +L+ + L
Sbjct: 61 DGVDIIKKLRE-WSNMPIIVVSARSEDRDKIDALDAGADDYLTKPFSVEELLARLRVSLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|299143947|ref|ZP_07037027.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518432|gb|EFI42171.1| DNA-binding response regulator ResD [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 223
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ +R + G+ VV +G A +K +E+ F +++ DI+MP +DG
Sbjct: 3 KILVVDDEEKIREVIKTYAEFEGHNVVEACDGLEAIEKCKEQEFDVIVMDIMMPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +++ D+ V+ ++ + KPF ++L+ +N ++ +
Sbjct: 63 SYKEIKKIN-DIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVKRR 119
>gi|299146431|ref|ZP_07039499.1| putative two-component system sensor histidine kinase/response
regulator, hybrid (one-component system) [Bacteroides sp.
3_1_23]
gi|298516922|gb|EFI40803.1| putative two-component system sensor histidine kinase/response
regulator, hybrid (one-component system) [Bacteroides sp.
3_1_23]
Length = 1360
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226
Query: 121 K 121
+
Sbjct: 1227 Q 1227
>gi|160932717|ref|ZP_02080106.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
gi|156867791|gb|EDO61163.1| hypothetical protein CLOLEP_01558 [Clostridium leptum DSM 753]
Length = 219
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + + +L +GYE V C +G A VR E F L+L DI++P +DG +
Sbjct: 3 KILIVEDDQTISKLIAASLSISGYESVPCFDGNEAVHMVRNEEFDLILLDIMLPGLDGFQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + E V+F+T V+ + KPF +L+ + +L
Sbjct: 63 VMEKIRETG--TPVIFLTAMGDVSDRVKGLKSGAEDYIVKPFEPLELLARIEIVLRR 117
>gi|15966090|ref|NP_386443.1| putative transcription regulator protein [Sinorhizobium meliloti
1021]
gi|15075360|emb|CAC46916.1| Two-component response regulator [Sinorhizobium meliloti 1021]
Length = 234
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L + G+ V + + A K+ F LL+ D++MP GI
Sbjct: 14 HLLVVDDDRRIRDLLNRYLVEQGFRVTTAADADEARRKLIGIDFDLLVVDVMMPGESGIA 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ + ++ +T A + L KPF R+LV +N +L
Sbjct: 74 LTQSLRQIKS-VPIIMLTALAEANSRIEGLEAGADDYLPKPFEPRELVLRINNILRR 129
>gi|331658014|ref|ZP_08358976.1| transcriptional activator protein CopR [Escherichia coli TA206]
gi|331056262|gb|EGI28271.1| transcriptional activator protein CopR [Escherichia coli TA206]
Length = 260
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|330900644|gb|EGH32063.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. japonica str. M301072PT]
Length = 127
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVHQGASEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQHWCSKGRATPVLILTARGSWSERIEGLKAGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|326381575|ref|ZP_08203269.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
gi|326199822|gb|EGD57002.1| putative OmpR family two-component response regulator [Gordonia
neofelifaecis NRRL B-59395]
Length = 238
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ + ++ ED+ + + L + G+EV +GA A R+ +++ D+ +P +D
Sbjct: 4 MSGRAMVVEDEAALASLVASYLERDGFEVTVTGDGADAVALARKVDPDVVVLDLGLPGLD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR D V+ +T A + ++KPF R+L + +
Sbjct: 64 GVEVCRRLR-TFSDAYVVMLTARADEVDTLVGLSVGADDYITKPFSPRELSARIQARMRR 122
>gi|323483719|ref|ZP_08089099.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
gi|323402910|gb|EGA95228.1| regulatory protein VanR [Clostridium symbiosum WAL-14163]
Length = 236
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 1 MN---QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN ++IL A+DD ++R + L G+EV+ +NG A +K L++ D++MP
Sbjct: 3 MNTERKRILFADDDPEIREVVRILLEHEGFEVIEASNGKEAVEK-SGGSVDLIILDVMMP 61
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GI + + ++F+T + L+KPF +LV V +
Sbjct: 62 GKSGILACLEIRKKL-TVPILFLTARTQDSDKALGFCAGGDDYLAKPFSYTELVARVKAM 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|239982791|ref|ZP_04705315.1| turgor pressure regulator [Streptomyces albus J1074]
gi|291454638|ref|ZP_06594028.1| response regulator [Streptomyces albus J1074]
gi|291357587|gb|EFE84489.1| response regulator [Streptomyces albus J1074]
Length = 231
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + R L L YEV S +G +A E +++ D+ +P+MD
Sbjct: 1 MT-RVLVVDDEPQIVRALELNLRARQYEVDSAGDGTTALRLAAERHPDVIVLDLGLPDMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + V+ ++ + + ++KPF + +L+ + +
Sbjct: 60 GVDVLRGLRS-WSRVPVLVLSARQSSDEKVQALDAGADDYVTKPFGMDELLARLRAAVRR 118
>gi|238758863|ref|ZP_04620036.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
35236]
gi|238702971|gb|EEP95515.1| Transcriptional regulatory protein baeR [Yersinia aldovae ATCC
35236]
Length = 239
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L AGY NG A VR P +++L D+++P DGI +
Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYRTQWLTNGLEAVATVRHTPPAIILLDLMLPGSDGITI 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ +M +T + KP+ R++V V +L
Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|229182985|ref|ZP_04310217.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
gi|228600442|gb|EEK58030.1| Two-component response regulator [Bacillus cereus BGSC 6E1]
Length = 213
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 1/109 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
M L L GY + +G A + + F +L DI+MP+MDG E ++
Sbjct: 1 MLELLTLYLTPIGYNCICARSGEEAISHIENQNFKFILLDIMMPKMDGWETCKKIRS-FS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ ++ +T ++KPFH +L + +L N
Sbjct: 60 NVPIIMVTARDQTVDVVQGLKIGADDYVTKPFHEEELFARIEAVLRRTN 108
>gi|217419703|ref|ZP_03451209.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|237811008|ref|YP_002895459.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
gi|242314295|ref|ZP_04813311.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
gi|217397007|gb|EEC37023.1| DNA-binding response regulator [Burkholderia pseudomallei 576]
gi|237506421|gb|ACQ98739.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346]
gi|242137534|gb|EES23936.1| DNA-binding response regulator [Burkholderia pseudomallei 1106b]
Length = 273
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E
Sbjct: 28 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 88 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 144
>gi|254453687|ref|ZP_05067124.1| DNA-binding response regulator ChvI [Octadecabacter antarcticus
238]
gi|198268093|gb|EDY92363.1| DNA-binding response regulator ChvI [Octadecabacter antarcticus
238]
Length = 233
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I L +DD ++ + L G+EV +C +G A D + L + DI MP MD
Sbjct: 1 MS-RIALVDDDRNILTSVQITLEAEGFEVETCADGQQALDAFTKRMPELAVLDIKMPRMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L +R + + V+F+T + KPF R LV + LL
Sbjct: 60 GMDLLQRLRQKTS-MPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRR 118
Query: 121 KN 122
++
Sbjct: 119 QD 120
>gi|253699010|ref|YP_003020199.1| response regulator receiver protein [Geobacter sp. M21]
gi|251773860|gb|ACT16441.1| response regulator receiver protein [Geobacter sp. M21]
Length = 204
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D + L K L K YEV+ N+G A + E L+L D++MPEMDG
Sbjct: 3 KKKLLVVDDTPENLIILYKILRKE-YEVLGANSGKEALLALAENLPDLILLDVMMPEMDG 61
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ R D+ V+FIT + LSKP + L + V L
Sbjct: 62 LEVCRILKDDSRYRDIPVIFITALSDEVDESRGFEAGAVDYLSKPVNPVILSHRVAVHLE 121
Query: 120 IKN 122
+++
Sbjct: 122 LQS 124
>gi|188493946|ref|ZP_03001216.1| heavy metal response regulator [Escherichia coli 53638]
gi|193071320|ref|ZP_03052238.1| heavy metal response regulator [Escherichia coli E110019]
gi|300899234|ref|ZP_07117505.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
gi|300901970|ref|ZP_07119998.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
gi|301304238|ref|ZP_07210353.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
gi|331683515|ref|ZP_08384116.1| transcriptional activator protein CopR [Escherichia coli H299]
gi|188489145|gb|EDU64248.1| heavy metal response regulator [Escherichia coli 53638]
gi|192955362|gb|EDV85847.1| heavy metal response regulator [Escherichia coli E110019]
gi|300357145|gb|EFJ73015.1| transcriptional activator protein Irlr [Escherichia coli MS 198-1]
gi|300405938|gb|EFJ89476.1| transcriptional activator protein Irlr [Escherichia coli MS 84-1]
gi|300840495|gb|EFK68255.1| transcriptional activator protein Irlr [Escherichia coli MS 124-1]
gi|315253295|gb|EFU33263.1| transcriptional activator protein Irlr [Escherichia coli MS 85-1]
gi|331079730|gb|EGI50927.1| transcriptional activator protein CopR [Escherichia coli H299]
Length = 260
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|220917497|ref|YP_002492801.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219955351|gb|ACL65735.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 434
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ D R L + L YEV S ++G A D R E L+L DI MP +DG E+
Sbjct: 133 LVADDEPDAREVLSQVLAPE-YEVASASDGQEALDLARAEHPDLVLLDIGMPRLDGFEVL 191
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + D+ V+F++G A+ S L KPF R+L V R L +
Sbjct: 192 QRLRQDPATADIPVIFVSGRGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 248
>gi|118470471|ref|YP_889241.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
gi|118171758|gb|ABK72654.1| DNA-binding response regulator [Mycobacterium smegmatis str. MC2
155]
Length = 249
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 58/108 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + AL G+++ + +GASA RE P +++ D+++P+M G++
Sbjct: 25 RVLVVDDEPVLAELVSMALRYEGWDITTAGDGASAIAAARETPPDVVVLDVMLPDMSGLD 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
+ R+ E P L ++ +T +V ++KPF L ++V
Sbjct: 85 VLRKLREQIPGLPLLLLTAKDSVEDRIAGLTAGGDDYVTKPFSLEEVV 132
>gi|117624105|ref|YP_853018.1| transcriptional regulatory protein YedW [Escherichia coli APEC O1]
gi|301029610|ref|ZP_07192682.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
gi|91072760|gb|ABE07641.1| putative 2-component transcriptional regulator yedW [Escherichia
coli UTI89]
gi|115513229|gb|ABJ01304.1| putative 2-component transcriptional regulator [Escherichia coli
APEC O1]
gi|294492861|gb|ADE91617.1| heavy metal response regulator [Escherichia coli IHE3034]
gi|299877512|gb|EFI85723.1| transcriptional activator protein Irlr [Escherichia coli MS 196-1]
gi|307626558|gb|ADN70862.1| transcriptional regulatory protein YedW [Escherichia coli UM146]
gi|323952458|gb|EGB48331.1| heavy metal response regulator [Escherichia coli H252]
Length = 260
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|313107944|ref|ZP_07794113.1| putative two-component response regulator [Pseudomonas aeruginosa
39016]
gi|310880615|gb|EFQ39209.1| putative two-component response regulator [Pseudomonas aeruginosa
39016]
Length = 228
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ ED+ + ++L + L +AG+ V ++G + LL+ D+++P D
Sbjct: 1 MNMKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+F+T AV L KPF +L+ V LL
Sbjct: 61 GWQILRSVRDAGMTIPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRR 120
>gi|117922456|ref|YP_871648.1| two component transcriptional regulator [Shewanella sp. ANA-3]
gi|117614788|gb|ABK50242.1| two component transcriptional regulator, winged helix family
[Shewanella sp. ANA-3]
Length = 227
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L + L A Y + ++G + E + + D+ +P++DGI
Sbjct: 2 RLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLFQAIEYNYDAAIIDVGLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + ++ +T + + L+KPFH +LV + L+
Sbjct: 62 LIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>gi|299541871|ref|ZP_07052194.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
gi|298725609|gb|EFI66250.1| transcriptional regulator [Lysinibacillus fusiformis ZC1]
Length = 228
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L L K GY V C NG A RE L+L DI++PE +G +
Sbjct: 4 ILVIEDEYPISQVLKVYLQKVGYSVTQCFNGGQALVMFRETQPDLVLLDIMLPEKNGWTI 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E V+ +T V + + KPF ++V V +L
Sbjct: 64 LKEIRER-STCPVIMLTALGEVNYRLEGFDHGADDYIGKPFIADEVVARVRAVLRR 118
>gi|237722419|ref|ZP_04552900.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
gi|260171106|ref|ZP_05757518.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides sp. D2]
gi|229448229|gb|EEO54020.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 2_2_4]
Length = 1360
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226
Query: 121 K 121
+
Sbjct: 1227 Q 1227
>gi|160887592|ref|ZP_02068595.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
gi|156108003|gb|EDO09748.1| hypothetical protein BACOVA_05614 [Bacteroides ovatus ATCC 8483]
Length = 1360
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1108 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1166
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1167 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1226
Query: 121 K 121
+
Sbjct: 1227 Q 1227
>gi|49081814|gb|AAT50307.1| PA3077 [synthetic construct]
Length = 224
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+ +I L AG +G + + R + ++L DI++P ++
Sbjct: 1 MHIHVLVVEDNFDLAGTVIDYLEAAGVVCDHARDGQAGLNLARANRYDVILLDIMLPRIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E V+ +T + D L KPF L +L+ + L
Sbjct: 61 GRQVCRQLREAGLQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRR 120
Query: 121 KN 122
++
Sbjct: 121 RS 122
>gi|2245588|gb|AAB92482.1| IrlR [Burkholderia pseudomallei 1026b]
Length = 229
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ ++ K L +AG+ +G + + E + L++ D+++P DG
Sbjct: 2 RILIVEDEPKTGMYVRKGLTEAGFIADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + KPF +LV V +L
Sbjct: 62 VLERLRRAHS-TPVLFLTARDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>gi|323139197|ref|ZP_08074253.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
gi|322395580|gb|EFX98125.1| two component transcriptional regulator, winged helix family
[Methylocystis sp. ATCC 49242]
Length = 239
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +I LL EDD ++ + + L G +V +GA+ + +E F +L+ D+ +P
Sbjct: 1 MNDRISVLLVEDDAEIGELVSRYLENNGMDVTLVADGAAMDARFSKESFDILILDLNLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR ++ ++ +T + KPF+ R+L+ V +L
Sbjct: 61 EDGLSICRRVRTTH-EIPIIILTANGEDVEKILGLEMGADDYIVKPFNSRELLARVRAVL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|239813046|ref|YP_002941956.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
gi|239799623|gb|ACS16690.1| two component transcriptional regulator, winged helix family
[Variovorax paradoxus S110]
Length = 260
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+AED+ + L L G+ V C A + +EP +L + D+ +P+++G
Sbjct: 4 KPRILIAEDESGIADTLQYVLKSDGFTPVWCATAEDAIAQFAQEPPALAILDVGLPDLNG 63
Query: 62 IELARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
EL +R L+ ++ ++F+T + ++KPF R+LV V
Sbjct: 64 FELFKRLRALNQSQGGAEVPMLFLTARSDEIDRVVGLELGADDYIAKPFSPRELVARVRT 123
Query: 117 LLTI 120
+L
Sbjct: 124 ILRR 127
>gi|254380439|ref|ZP_04995805.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
gi|194339350|gb|EDX20316.1| PAS/PAC sensor hybrid histidine kinase [Streptomyces sp. Mg1]
Length = 1378
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 61/119 (51%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+A+D+ DMR +LI+ L AGY+V + ++G A +R + F L+++D++MP +DG+
Sbjct: 630 HVLVADDNADMREYLIRLLLGAGYQVSAVDDGRQALGAIRTKAFDLVVSDVMMPHLDGLA 689
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ ++ A + + L KPF +L+ V + +
Sbjct: 690 LVAALRADPRTASVPVLLLSARAGQEASIEGLQAGADDYLVKPFAAAELLARVRANIEL 748
>gi|197124506|ref|YP_002136457.1| transcriptional regulator [Anaeromyxobacter sp. K]
gi|196174355|gb|ACG75328.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter sp. K]
Length = 230
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ D+ L L +G+E + G A +R L+L D+++P++ G E+
Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ +T ++KPF +R+LV + +L
Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRR 121
>gi|149918888|ref|ZP_01907374.1| two component transcriptional regulator, winged helix family
protein [Plesiocystis pacifica SIR-1]
gi|149820262|gb|EDM79679.1| two component transcriptional regulator, winged helix family
protein [Plesiocystis pacifica SIR-1]
Length = 239
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + + L V +G ++ L+L D+++P +DG+E
Sbjct: 5 RILLIEDDEKLAERTAEYLQSHKATVEIVPDGERGLERAASGEHELVLLDLMLPGIDGLE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ + + V+ ++ + KPF R+L+ + +L +
Sbjct: 65 LCRKLRQR-SKVPVIILSARGDEVDRIVGLEVGADDYMPKPFSPRELLARIRAVLRRHS 122
>gi|221065560|ref|ZP_03541665.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
gi|220710583|gb|EED65951.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
Length = 227
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L + L +AGY NG+ + +SL++ D+++P ++G +
Sbjct: 2 RILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|22123988|ref|NP_667411.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis KIM 10]
gi|45439938|ref|NP_991477.1| DNA-binding transcriptional regulator CpxR [Yersinia pestis biovar
Microtus str. 91001]
gi|21956728|gb|AAM83662.1|AE013607_11 transcriptional regulator in 2-component system [Yersinia pestis
KIM 10]
gi|45434793|gb|AAS60354.1| two component system response regulatory protein [Yersinia pestis
biovar Microtus str. 91001]
Length = 240
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A ++ LLL +MP +GI
Sbjct: 10 HKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALSQLDSSIDLLLLDI-MMPRKNGI 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 69 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 127
>gi|116621041|ref|YP_823197.1| two component sigma54-specific Fis family transcriptional regulator
[Candidatus Solibacter usitatus Ellin6076]
gi|116224203|gb|ABJ82912.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Candidatus Solibacter usitatus Ellin6076]
Length = 450
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++IL+ ED++ +RR + L AG++V + V + ++LTD+ +P MD
Sbjct: 1 MKKRILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIV--DRADMVLTDLKLPNMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + V+ +T F V ++ L KPF L L+ V++ L +
Sbjct: 59 GQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPFSLDHLMQVVDKALEV 118
Query: 121 K 121
+
Sbjct: 119 R 119
>gi|332529947|ref|ZP_08405898.1| two component transcriptional regulator [Hylemonella gracilis ATCC
19624]
gi|332040644|gb|EGI77019.1| two component transcriptional regulator [Hylemonella gracilis ATCC
19624]
Length = 250
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV------REEPFSLLLTD 53
M+ +L+ EDD + + L +G+ V GA+ K+ E+ L++ D
Sbjct: 1 MSPTPLLMIEDDARLAAMVRDYLAPSGFAVQHAGTGAAGLAKLGASPQGAEQAPQLIVLD 60
Query: 54 IVMPEMDGIELARRATEL---DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+++P+MDG+++ RR L ++ +T L+KPF R+L
Sbjct: 61 LMLPDMDGLDICRRIRSLPGATAHTPILMLTAKGDPMDRVIGLEIGADDYLAKPFEPREL 120
Query: 111 VNEVNRLLTI 120
+ V LL
Sbjct: 121 LARVRALLRR 130
>gi|269929174|ref|YP_003321495.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269788531|gb|ACZ40673.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 232
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 7/124 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L LG AGY+V + +GA+A V E L++ D+ MP MDG
Sbjct: 2 RILVVDDDPRIRETLAGPLGAAGYDVTAVGDGAAALAAVERERPDLIILDVAMPGMDGFA 61
Query: 64 LARRATELD-----PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ R + P V+F+T A ++KPF + L+ V L
Sbjct: 62 VCRELRAYEELSGLPRTPVIFLTVRDDFASEETGFQAGADDYVAKPFSIPALLARVR--L 119
Query: 119 TIKN 122
+ N
Sbjct: 120 RLPN 123
>gi|226305622|ref|YP_002765582.1| OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
gi|229489559|ref|ZP_04383422.1| response regulator, two-component system [Rhodococcus erythropolis
SK121]
gi|226184739|dbj|BAH32843.1| putative OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
gi|229323656|gb|EEN89414.1| response regulator, two-component system [Rhodococcus erythropolis
SK121]
Length = 226
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 56/116 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LLAEDD+ + L +ALG+ GY V G +A + E F LL+ D+ +P MDG+E+
Sbjct: 4 VLLAEDDEAIAAPLSRALGREGYSVTVEPTGPAALQQALEGDFDLLILDLGLPGMDGLEV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ L V+ +T +SKPF L +L+ V LL
Sbjct: 64 CRQIRAHRTSLAVLMLTARTDEVDFVVGLDAGADDYVSKPFRLAELMARVRALLRR 119
>gi|83643472|ref|YP_431907.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83631515|gb|ABC27482.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 226
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ +L K L ++GY V + +NG + E + LLL D ++PE+DG+
Sbjct: 2 RVLVIEDDKDVAAYLSKGLKESGYVVDATDNGKTGLHMATTESYDLLLVDRMLPELDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ ++ V L KPF +L+ + LL
Sbjct: 62 VVRMLRAGGSKTPVLVLSALGEVDDRVQGLRAGGDDYLVKPFSFSELLARIEALLRR 118
>gi|21243530|ref|NP_643112.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
gi|21109094|gb|AAM37648.1| two-component system regulatory protein [Xanthomonas axonopodis pv.
citri str. 306]
Length = 229
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M +K+LL EDD D L L + G++V +G A R+ L+L D+++P++
Sbjct: 1 MTGKKVLLVEDDSDSASILEAYLRRDGFDVAVAGDGERAIQLHRQWAPDLVLLDVMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ D V+ +T + + KP+ +++V V+ +L
Sbjct: 61 SGIEVLSTIRRAG-DTPVIMVTAIGDEPEKLGALRYGADDYVVKPYSPKEVVARVHAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|254250739|ref|ZP_04944058.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
gi|124879873|gb|EAY67229.1| Heavy metal response regulator [Burkholderia cenocepacia PC184]
Length = 225
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L ++G+ V +GA +EE + +++ D+++P +DG
Sbjct: 2 RILIVEDEPKTGAYLKKGLEESGFSVDLAKDGAEGLMLAQEERYDVIVLDVMLPVLDGWG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E V+F+T V L KPF +L+ + L
Sbjct: 62 VLKRLRETH-TTPVLFLTARDDVQDRVHGLELGADDYLVKPFAFVELLARIRTLARR 117
>gi|310827229|ref|YP_003959586.1| response regulator [Eubacterium limosum KIST612]
gi|308738963|gb|ADO36623.1| response regulator [Eubacterium limosum KIST612]
Length = 233
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ ++ + L G+EV + G A +K+ + L++ D+++P DG+
Sbjct: 2 KKILIIEDELNIFELIKFNLEAQGFEVAGVHEGTGAVEKIVDIRPDLIILDLMLPGKDGL 61
Query: 63 ELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + ++KPF +++L V +L
Sbjct: 62 TICREVRADKNLSYIPVIMLTAKSEEFDKVLGLEMGADDYMTKPFSVKELYARVKAVLRR 121
>gi|308173799|ref|YP_003920504.1| yvrH [Bacillus amyloliquefaciens DSM 7]
gi|307606663|emb|CBI43034.1| yvrH [Bacillus amyloliquefaciens DSM 7]
Length = 235
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 21/126 (16%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M+Q K+L+ +D+ ++ + L + G V++ + + +E L++ DI++
Sbjct: 1 MSQTQSKVLIIDDEREILELIKTVLIREGIDRVITASTARDGLAQFHQENPDLVILDIML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ A ++KPF + + V
Sbjct: 61 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKKVAYRVKA 119
Query: 117 LLTIKN 122
L +
Sbjct: 120 QLRRSS 125
>gi|262044958|ref|ZP_06018000.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037685|gb|EEW38914.1| DNA-binding response regulator [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 229
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I L E + + L+ L + G++V G A + + + + D+ +P++ G E
Sbjct: 5 RIWLVEYEQSIADTLVYMLQQEGFQVSVFGRGLPALEAAAHQAPDVAILDVGLPDISGFE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR P L V+F+T + ++KPF R++ V +L
Sbjct: 65 LCRRLLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRR 121
>gi|239945362|ref|ZP_04697299.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
gi|239991818|ref|ZP_04712482.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
Length = 220
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
AED+ D+R + L GYEV +G +A V L+ D++MP +DG+ + RR
Sbjct: 2 AEDEPDVRAAVEDGLSVEGYEVRGVGDGLAALSAVTAWEPDALVLDVMMPALDGLAVCRR 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ V+ +T ++V+ D L KPF L +LV V LL
Sbjct: 62 LRAMEDRTPVLVLTALSSVSERVDGLEAGADDYLVKPFALDELVARVRALLRR 114
>gi|119944737|ref|YP_942417.1| response regulator receiver modulated diguanylate cyclase
[Psychromonas ingrahamii 37]
gi|119863341|gb|ABM02818.1| response regulator receiver modulated diguanylate cyclase
[Psychromonas ingrahamii 37]
Length = 322
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
QK+L+ +D D + LI L Y+ NG A + + ++L DIVMPEMDG
Sbjct: 6 KQKVLIVDDIKDNIKVLIDLLKPE-YKTFFATNGEKALELAQNMSPDIILLDIVMPEMDG 64
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ ++ + D+ V+FI+ + + ++KP + V L
Sbjct: 65 FEVCQKLKSNPITCDIPVIFISAMSDIGDETKGLEVGAVDYITKPISPAIVKARVKNHLK 124
Query: 120 IK 121
++
Sbjct: 125 LQ 126
>gi|317126106|ref|YP_004100218.1| transcriptional regulator [Intrasporangium calvum DSM 43043]
gi|315590194|gb|ADU49491.1| two component transcriptional regulator, winged helix family
[Intrasporangium calvum DSM 43043]
Length = 244
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D+ + +G+AGY + G A RE +++ D+ +P DG+E
Sbjct: 14 RVLVVDDERDIAEMVSDYIGRAGYVTLEAYTGPDAVSAAREFDPDVIMLDLGLPGFDGVE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + D ++ +T A + ++KPF +++ + +L
Sbjct: 74 VCRQIR-MFSDCYILMLTARADEVARVVGLSVGADDYITKPFSTNEVLARIQAVLRR 129
>gi|290958392|ref|YP_003489574.1| two-component system response regulator [Streptomyces scabiei
87.22]
gi|260647918|emb|CBG71023.1| two-component system response regulator [Streptomyces scabiei
87.22]
Length = 235
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|197335474|ref|YP_002156937.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
gi|197316964|gb|ACH66411.1| two-component sensor histidine kinase [Vibrio fischeri MJ11]
Length = 1126
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ + L L GY V N+G EE LLL D++MP M G E+
Sbjct: 722 LVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELLLLDVMMPGMSGYEVC 781
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E L ++ +T LSKPF+ ++L + L
Sbjct: 782 QSLRETYSHSQLPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLK 837
>gi|197104776|ref|YP_002130153.1| stalked-cell differentiation controlling protein [Phenylobacterium
zucineum HLK1]
gi|196478196|gb|ACG77724.1| stalked-cell differentiation controlling protein [Phenylobacterium
zucineum HLK1]
Length = 454
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + R L L YEV++ ++G +A E ++L D++MP MD
Sbjct: 1 MSARILVVDDIEANVRLLEAKLTAEYYEVLTASDGPTALAMAAAERPDIVLLDVMMPGMD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + RR + + V+ +T A L+KP L+ V L
Sbjct: 61 GFSVCRRLKDDPETRHVPVVLVTALDGRADRVAGLEAGADDFLTKPIDDVMLLARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 59.8 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 4/120 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + L + V + A R P L + + DG+
Sbjct: 155 RILIIDDNVRQAQRVCTELAIE-HRPVIETDYDKALLSAR-GPVDLAIVNAGAKAFDGLR 212
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E L ++ + F + +L++P +L + K
Sbjct: 213 FCAQLRSDEATRGLPILAVVDFDERQRVVKALEIGVNDILARPIDPGELAARAKTQIRRK 272
>gi|170738018|ref|YP_001779278.1| two component LuxR family transcriptional regulator [Burkholderia
cenocepacia MC0-3]
gi|169820206|gb|ACA94788.1| two component transcriptional regulator, LuxR family [Burkholderia
cenocepacia MC0-3]
Length = 312
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + FL L GY V+ +G A ++ ++L D +MP+MDG E
Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+F+T ++KP +L + +
Sbjct: 62 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRR 119
>gi|89052908|ref|YP_508359.1| two component transcriptional regulator [Jannaschia sp. CCS1]
gi|88862457|gb|ABD53334.1| two component transcriptional regulator, winged helix family
[Jannaschia sp. CCS1]
Length = 228
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKAL-GKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KILL +D+DD+R L + L ++V NGA A ++ +E + L++ D+ +P+ DG
Sbjct: 5 KKILLVDDEDDLREALSEQLVMTEDFDVFEAANGAQAMERAKEGIYDLVILDVGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
EL R + V+ +TG + A ++KPF L+ + L
Sbjct: 65 RELCRLMRKQGVKCPVLMLTGHDSDADTILGLDAGANDYVTKPFRFPVLLARIRAQLR 122
>gi|189438905|ref|YP_001953986.1| response regulator [Bifidobacterium longum DJO10A]
gi|296454575|ref|YP_003661718.1| winged helix family two component transcriptional regulator
[Bifidobacterium longum subsp. longum JDM301]
gi|32700051|gb|AAP86676.1| response regulator [Bifidobacterium longum subsp. infantis]
gi|189427340|gb|ACD97488.1| Response regulator [Bifidobacterium longum DJO10A]
gi|296184006|gb|ADH00888.1| two component transcriptional regulator, winged helix family
[Bifidobacterium longum subsp. longum JDM301]
Length = 240
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I + +DD + L L G++ V+C +G A + L+L D+++P +DG E
Sbjct: 3 TIFIVDDDQAIGEMLSLVLENEGFQTVTCLDGLRAVEMFPIVKPDLILLDVMLPGLDGTE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ARR ++ ++ +T + + KPF + +L+ +
Sbjct: 63 VARRIRA-TSNVPIIMLTAKSDTLDVVAGLEAGADDYVPKPFKVAELLARIRA 114
>gi|58583493|ref|YP_202509.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
gi|58428087|gb|AAW77124.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 281
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 49/116 (42%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 50 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 109
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + +L+ V LL
Sbjct: 110 ARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRR 165
>gi|70731796|ref|YP_261538.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
gi|68346095|gb|AAY93701.1| DNA-binding response regulator [Pseudomonas fluorescens Pf-5]
Length = 240
Score = 139 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL EDD + ++ + L G+ V C NG R PF ++L DI++P MDG+E
Sbjct: 10 RILTIEDDPVLGAYVREQLEHCGFAVTWCQNGPEGLGIARRRPFDVVLLDILLPGMDGLE 69
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ ++ A A L KPF + +L + +L
Sbjct: 70 VLTHFRQSHS-TPVLLMSALGAEADRISGFRLGADDYLPKPFSMAELRVRIEAILRR 125
>gi|332307159|ref|YP_004435010.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
gi|332174488|gb|AEE23742.1| two component transcriptional regulator, winged helix family
[Glaciecola agarilytica 4H-3-7+YE-5]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 21/116 (18%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L G+ ++G A +++ ++ D+++P DG+ +
Sbjct: 7 VLVVEDEPKIAQILVDFLSLEGFLTHVVHDGDEAEAAIKQVNPDCVILDLMLPGKDGLSI 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T + KPF R++V V LL
Sbjct: 67 CKDVRK-FSHVPIIMLTARVDEIDRLMGLGFGADDYVCKPFSPREVVARVQALLRR 121
>gi|325922833|ref|ZP_08184560.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
gi|325546690|gb|EGD17817.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas gardneri ATCC 19865]
Length = 238
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLAVLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + ++ V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSNVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRALLR 126
>gi|325859665|ref|ZP_08172795.1| response regulator receiver domain protein [Prevotella denticola
CRIS 18C-A]
gi|325482591|gb|EGC85594.1| response regulator receiver domain protein [Prevotella denticola
CRIS 18C-A]
Length = 716
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ D+R +L L Y V+ ++G +E L+++D++MP MDG+E
Sbjct: 467 TVLVVDDNKDIRAYLQLTLQDT-YRVLLASDGRQGLQLAKENIPDLIVSDVMMPVMDGLE 525
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + L + V+ +T + + + A ++KPF + L + LL +
Sbjct: 526 LCRRIKDETLTAHIPVLLLTARSQESQRIEGYATGADAYITKPFSGKLLKVRIGNLLQNR 585
>gi|291521712|emb|CBK80005.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ ED+ + L +G++VV + G + E F+L++ D+++P +D
Sbjct: 1 MS-KILIVEDEVAIAELEKDYLELSGFDVVMQHTGDAGLKAALNEDFNLIILDLMLPNVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ ++ E + ++ ++ ++KPF +LV V L
Sbjct: 60 GFEICKKVREK-KNTPIIMVSAKKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|291446455|ref|ZP_06585845.1| two component transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|291349402|gb|EFE76306.1| two component transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + AL G+E G +A +V L++ D+++P+ GI+
Sbjct: 7 RVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGID 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+F+T A ++KPF L +L+ + +L
Sbjct: 67 ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRR 123
>gi|163737971|ref|ZP_02145387.1| response regulator receiver modulated serine phosphatase
[Phaeobacter gallaeciensis BS107]
gi|161388587|gb|EDQ12940.1| response regulator receiver modulated serine phosphatase
[Phaeobacter gallaeciensis BS107]
Length = 423
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +D RR L+ +L K G+EVV +G +A + +P L+L+D +MP M+G+
Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFEVVEAESGEAAMEICESDPPDLILSDWMMPGMNGL 78
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRL 117
E R D + +T + L+KP +L + R+
Sbjct: 79 EFCRAFRTKSQDNYSYFILLTSKSEKNEVAQGLDAGADDFLTKPVSSDELRARISAGERI 138
Query: 118 LTIK 121
L ++
Sbjct: 139 LRMQ 142
>gi|126736572|ref|ZP_01752312.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
gi|126713885|gb|EBA10756.1| two component transcriptional regulator, winged helix family
protein [Roseobacter sp. CCS2]
Length = 220
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ + L K L G V +GA A EP+ +++ D+ +P DG+
Sbjct: 2 RILIAEDEPVLASQLKKTLMSEGLTVDVAVDGAEAQYLGETEPYDVIILDLGLPIRDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D ++ +T D L+KPFH+ +L V L+ K
Sbjct: 62 VLKNLRSGGNDTSILILTARNDWTDRVDGLDAGADDYLTKPFHMAELSARVRALIRRK 119
>gi|156743077|ref|YP_001433206.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
gi|156234405|gb|ABU59188.1| response regulator receiver protein [Roseiflexus castenholzii DSM
13941]
Length = 200
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M+Q IL+ +D L L +AGY+V+ G A L++ D++MP
Sbjct: 1 MSQSPDTILVVDDTPANLALLFTGLRRAGYKVLINERGDVALQTAINVQPDLIVLDVMMP 60
Query: 58 EMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E RR D+ V+ +T ++KP ++ ++ +N
Sbjct: 61 GMDGFETCRRLKADPRTKDIPVILMTALTDAIEEVTGLRAGAVDYITKPINVDVVLARIN 120
Query: 116 RLLTIK 121
LT++
Sbjct: 121 THLTLR 126
>gi|91202538|emb|CAJ72177.1| hypothetical histidine kinase protein [Candidatus Kuenenia
stuttgartiensis]
Length = 511
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 65/119 (54%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KILL +D++ +R L L GY+V N+ A + ++ + L+++D+ MP M+
Sbjct: 1 MKKKILLVDDEETLRWALQNTLLDDGYDVEETNDSIEALELAKKRKYDLVISDLTMPFMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G++L + +P ++ + +TG+ + ++ + ++KPF L + + ++L+
Sbjct: 61 GVQLIAEIKKANPSIRAIIMTGYGSTEAVIEAMHTGVSDFITKPFKLEHMKKVIRKVLS 119
>gi|78046443|ref|YP_362618.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|166710712|ref|ZP_02241919.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|188575358|ref|YP_001912287.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|194364430|ref|YP_002027040.1| winged helix family two component transcriptional regulator
[Stenotrophomonas maltophilia R551-3]
gi|289663571|ref|ZP_06485152.1| two-component system regulatory protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289670959|ref|ZP_06492034.1| two-component system regulatory protein [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|325917339|ref|ZP_08179557.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325926570|ref|ZP_08187886.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
gi|78034873|emb|CAJ22518.1| two-component system regulatory protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|188519810|gb|ACD57755.1| two-component system regulatory protein [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|194347234|gb|ACF50357.1| two component transcriptional regulator, winged helix family
[Stenotrophomonas maltophilia R551-3]
gi|325536473|gb|EGD08251.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas vesicatoria ATCC 35937]
gi|325543078|gb|EGD14525.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Xanthomonas perforans 91-118]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 11 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 71 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 128
>gi|119855088|ref|YP_935693.1| two component transcriptional regulator [Mycobacterium sp. KMS]
gi|145225906|ref|YP_001136560.1| two component transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|119697806|gb|ABL94878.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. KMS]
gi|145218369|gb|ABP47772.1| two component transcriptional regulator, winged helix family
[Mycobacterium gilvum PYR-GCK]
Length = 246
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + ++V ++GA A + RE +++ D+ +P +DG+E+
Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVEVC 74
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T + ++KPF R+LV + +L
Sbjct: 75 RQLR-TFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRR 128
>gi|86143504|ref|ZP_01061889.1| two-component system, transcriptional regulatory protein
[Leeuwenhoekiella blandensis MED217]
gi|85829951|gb|EAQ48412.1| two-component system, transcriptional regulatory protein
[Leeuwenhoekiella blandensis MED217]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+LL EDD + L + L G+EVV GA + + + F L + D+ +P+MDG
Sbjct: 5 KKKLLLVEDDPTLGYLLSEYLQMNGFEVVWAKTGALGLETLDQHLFDLAILDVSLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A + E L +F+T A A L KP +LV + L+
Sbjct: 65 FRVASKIKENTAQLPFIFLTARALKVDVLKGFALGAVDYLKKPIDEEELVVRIKNLINR 123
>gi|313145398|ref|ZP_07807591.1| two-component system sensor histidine kinase/response regulator
[Bacteroides fragilis 3_1_12]
gi|313134165|gb|EFR51525.1| two-component system sensor histidine kinase/response regulator
[Bacteroides fragilis 3_1_12]
Length = 1361
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G +E L+++D++MP DG
Sbjct: 1112 KKTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDG 1170
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1171 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1229
>gi|291569797|dbj|BAI92069.1| two-component hybrid sensor and regulator [Arthrospira platensis
NIES-39]
Length = 372
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL +D + + L GY V +G SA + E+P L+L D++MP +DG E
Sbjct: 14 HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR P + ++ IT + + + KP + +L+ V LL +K
Sbjct: 74 VTRRIRNNPNLPFIPILLITAH-DQSSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132
>gi|254881198|ref|ZP_05253908.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
gi|254833991|gb|EET14300.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 4_3_47FAA]
Length = 1408
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|170739183|ref|YP_001767838.1| two component transcriptional regulator [Methylobacterium sp. 4-46]
gi|168193457|gb|ACA15404.1| two component transcriptional regulator, winged helix family
[Methylobacterium sp. 4-46]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD ++ + + + L V + + + L++ D+++P DG+
Sbjct: 8 HILLVEDDREISQLVARYLRGNDLRVSLAGDAREMDRLLADSRVDLIVLDLMLPGEDGLS 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T + L+KPF+ R+L+ + +L
Sbjct: 68 VCRRLRA-HSSVPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR 123
>gi|167562133|ref|ZP_02355049.1| DNA-binding response regulator KdpE [Burkholderia oklahomensis
EO147]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 1 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 61 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 119
Query: 118 LTIKN 122
L +N
Sbjct: 120 LRRRN 124
>gi|152995590|ref|YP_001340425.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150836514|gb|ABR70490.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++ L + L V + +G + + ++ L+L D++MP+++G E
Sbjct: 3 HILIIDDDVELSDLLKEVLSFENCAVSAAYDGEAGLAAM-DDSVDLILLDVMMPKLNGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E D+ V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKQLREKW-DVPVLMLTAKGEEIDRVVGLELGADDYLPKPFSERELLARIRAILRR 117
>gi|325662457|ref|ZP_08151063.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471291|gb|EGC74515.1| hypothetical protein HMPREF0490_01803 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ +DD ++ + L + Y +++ NG A +K+ ++L D+ MP +D
Sbjct: 1 MGYKILIVDDDRELLKMLHRYFTLKNYTIITAENGVEALEKI-SVNPDIILLDVNMPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR ++ ++F+T + KPF L++L + L
Sbjct: 60 GIEVCRRIRDIVS-CPIIFLTAKVEEQDRVIGLLSGGDDYVLKPFSLKELDARIFAHLKR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|310824183|ref|YP_003956541.1| sensor protein [Stigmatella aurantiaca DW4/3-1]
gi|309397255|gb|ADO74714.1| Sensor protein [Stigmatella aurantiaca DW4/3-1]
Length = 2028
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ D+R ++ LG+ V + NG A ++VR +P L+L D++MP +DG
Sbjct: 1657 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1716
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ ++ A + L KPF R+L+ V L +
Sbjct: 1717 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1775
Score = 127 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR +L + L + V + G+ A R P SL+++D++MP ++G+E
Sbjct: 642 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGLE 700
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ ++ A + L KPF ++L+ V LLT+
Sbjct: 701 LVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 759
>gi|300864661|ref|ZP_07109518.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
gi|300337322|emb|CBN54666.1| response regulator receiver protein [Oscillatoria sp. PCC 6506]
Length = 121
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +++ +D +R + L G V ++G A ++++ L++ DIVMP M+
Sbjct: 1 MS-TVMVVDDSVTLREMIADLLKGRGLNVTVASDGVEALEQIKANCPDLVVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR +L V+ + + ++KPFH ++LV + +LL
Sbjct: 60 GYEVCRRLKSDPKTQNLPVVMCSSKSEEFDRYWGMKQGADAYIAKPFHPQELVGTIKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|258591511|emb|CBE67812.1| Response regulator receiver protein [NC10 bacterium 'Dutch
sediment']
Length = 397
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD DMRR L+ L GY+VV +GA A+D ++ EPFS ++TD +MP +DG+E
Sbjct: 2 RILIVDDDVDMRRLLLHTLQSWGYDVVQAIDGAQAWDLLQNEPFSFVITDWIMPNLDGLE 61
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
L RR + ++ +T + L KPF+ +L +
Sbjct: 62 LCRRIRGARFTRYIYIILLTAKHSKEELIKGMEAGADDFLIKPFNAGELKVRIRA 116
>gi|289623891|ref|ZP_06456845.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648450|ref|ZP_06479793.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298486910|ref|ZP_07004964.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|298158575|gb|EFH99641.1| Response regulator BaeR [Pseudomonas savastanoi pv. savastanoi
NCPPB 3335]
gi|330868308|gb|EGH03017.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAKPPQLILLDIMLPGRDGMDI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ D+ ++ IT + KPF R++V V +L +
Sbjct: 70 CKELRS-FSDVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRRSS 126
>gi|285019533|ref|YP_003377244.1| two-component system regulatory protein [Xanthomonas albilineans
GPE PC73]
gi|283474751|emb|CBA17250.1| probable two-component system regulatory protein [Xanthomonas
albilineans]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 11 VLVVEDNRNISEMIGEYLEGRGFEVDYACDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 70
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 71 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 128
>gi|238750821|ref|ZP_04612319.1| Transcriptional regulator in 2-component system [Yersinia rohdei
ATCC 43380]
gi|238710965|gb|EEQ03185.1| Transcriptional regulator in 2-component system [Yersinia rohdei
ATCC 43380]
Length = 264
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + + LLL +MP +GI
Sbjct: 34 HKILLVDDDRELTSLLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDI-MMPRKNGI 92
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 93 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 151
>gi|242309377|ref|ZP_04808532.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
gi|239523948|gb|EEQ63814.1| DNA-binding response regulator [Helicobacter pullorum MIT 98-5489]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 62/122 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL EDD ++ + + L + GYEVV CN+G A +K EE F +LL D+++P +D
Sbjct: 1 MKAKILLLEDDMALQEIIAECLSEEGYEVVCCNDGIEASNKAYEENFDILLLDVMVPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + + + +FIT ++ L KPF L +L+ + LL
Sbjct: 61 GFETLKSIHQSGRRIPAIFITALNSIKDLEIGFKSGCDDYLRKPFELSELLLRIEALLKR 120
Query: 121 KN 122
N
Sbjct: 121 SN 122
>gi|170720670|ref|YP_001748358.1| histidine kinase [Pseudomonas putida W619]
gi|169758673|gb|ACA71989.1| histidine kinase [Pseudomonas putida W619]
Length = 785
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G V G A +++ +E F L+L D MP MDG E
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCVVQVATQGVEALERLEQEDFDLVLMDCNMPVMDGYE 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ ++
Sbjct: 725 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHW 780
>gi|56415851|ref|YP_152926.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364781|ref|YP_002144418.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56130108|gb|AAV79614.1| two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|197096258|emb|CAR61856.1| two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|329926298|ref|ZP_08280817.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
gi|328939333|gb|EGG35690.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
[Paenibacillus sp. HGF5]
Length = 1050
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +DD R L L Y + + A A + + +P+ LL+ D++MPEM G E
Sbjct: 720 RILAVDDDPVNLRILAGILSAEPYNLNVVASAAEALELLGSQPWDLLIADVMMPEMSGYE 779
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R E +L V+ +T A ++KP +L ++ L+T+K
Sbjct: 780 LTRTVRERFNASELPVLLLTARGESADVYAGFQSGANDYVTKPVDPVELRYRIHSLITLK 839
Query: 122 N 122
+
Sbjct: 840 H 840
>gi|309775020|ref|ZP_07670035.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
3_1_53]
gi|308917238|gb|EFP62963.1| DNA-binding response regulator ResD [Erysipelotrichaceae bacterium
3_1_53]
Length = 226
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D++ +R + K G+E+ +G A +K ++ + L++ DI+MP +D
Sbjct: 1 MS-RLLVVDDEERIRSMIRKYGEFEGHEIEEAVDGMDAIEKCKQAAYDLIIMDIMMPNLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + D V+ ++ + KPF ++L+ V+ +L
Sbjct: 60 GFSAVKEIRK-DASTPVIMLSARGEEYDRIHGFEIGIDDYVVKPFSPKELMMRVSAILKR 118
Query: 121 KN 122
+
Sbjct: 119 YH 120
>gi|264678635|ref|YP_003278542.1| two component heavy metal response transcriptional regulator
[Comamonas testosteroni CNB-2]
gi|299529727|ref|ZP_07043163.1| two component heavy metal response transcriptional regulator
[Comamonas testosteroni S44]
gi|262209148|gb|ACY33246.1| two component heavy metal response transcriptional regulator
[Comamonas testosteroni CNB-2]
gi|298722283|gb|EFI63204.1| two component heavy metal response transcriptional regulator
[Comamonas testosteroni S44]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L + L +AGY NG+ + +SL++ D+++P ++G +
Sbjct: 2 RILIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHLALQGEYSLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|239834699|ref|ZP_04683027.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301]
gi|239822762|gb|EEQ94331.1| Regulatory protein virG [Ochrobactrum intermedium LMG 3301]
Length = 248
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ D++MP DG+
Sbjct: 8 HILIVDDDREIRELVSSYLKKNGLRTSVAADGRQMRTFLEANAVDLIVLDVMMPGDDGLV 67
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + V+ +T + + KPF R+L+ + +L
Sbjct: 68 LCRELRSGKHRSVPVLLLTARSDEMDRIIGLEMGADDYIVKPFAARELLARIKAVLRR 125
>gi|259907809|ref|YP_002648165.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96]
gi|224963431|emb|CAX54919.1| Two-component system response regulator [Erwinia pyrifoliae Ep1/96]
Length = 288
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD ++ L + L G++ G + D ++ ++ DI++P+M GI+
Sbjct: 64 KILLVDDDPELGTMLSEYLIAEGFDASLALTGKAGVDGALSGDYNAMILDIMLPDMSGID 123
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + L V+ +T + KP + R+LV + +L
Sbjct: 124 VLRQVRQHGR-LPVIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRR 179
>gi|217969842|ref|YP_002355076.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
gi|217507169|gb|ACK54180.1| two component transcriptional regulator, winged helix family
[Thauera sp. MZ1T]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAEDD + + +AL + G V +G A + + + LL+ D+ +P M+GIE
Sbjct: 2 RILLAEDDPVIADGICRALRRGGCAVDHVADGMEADAALAGQGYDLLILDLGLPRMNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R V+ +T V L+KPF L +L V L
Sbjct: 62 VLKRLRARKSAQPVLILTAQDGVDDRVRGLDAGADDYLTKPFALPELEARVRALTRR 118
>gi|163761277|ref|ZP_02168352.1| phosphate regulon, two-component response regulator protein
[Hoeflea phototrophica DFL-43]
gi|162281434|gb|EDQ31730.1| phosphate regulon, two-component response regulator protein
[Hoeflea phototrophica DFL-43]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I + ED++ + L L GYEV + G A ++E LL+ D ++P +
Sbjct: 3 MSPRITVVEDEEALSVLLQYNLEAEGYEVDAVLRGDEAEIHLQERVPDLLILDWMLPGIS 62
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GIEL RR L ++ +T + A + KPF +L+ V +L
Sbjct: 63 GIELCRRLRARPETERLPIIMLTARGEESERVRGLATGADDYVVKPFSTPELLARVRAML 122
Query: 119 TI 120
Sbjct: 123 RR 124
>gi|117168620|gb|ABK32284.1| Jer4 [Sorangium cellulosum]
Length = 461
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 59/121 (48%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ + L L K G++ + A A + + E F +++TD+ M M+
Sbjct: 1 MTGRVLIVDDERGVCELLDAGLKKRGFQAAWRTSAAEALELLGAEDFDVVVTDMTMRGMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL R + PDL V+ IT F ++ + ++KPF L L V R L
Sbjct: 61 GLELCERIAQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRH 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|89899236|ref|YP_521707.1| two component heavy metal response transcriptional regulator
[Rhodoferax ferrireducens T118]
gi|89343973|gb|ABD68176.1| two component heavy metal response transcriptional regulator,
winged helix family [Rhodoferax ferrireducens T118]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + LG+AG+ V +G E + L + D+++P MDG
Sbjct: 2 KILIVEDEPKTGDYLKQGLGEAGFVVDLLRDGTDGLHHALTEDYDLAILDVMLPGMDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ V+F++ V L KPF +L+ V LL
Sbjct: 62 VLAGIRKAGKDMPVLFLSARDHVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|189499944|ref|YP_001959414.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides BS1]
gi|189495385|gb|ACE03933.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides BS1]
Length = 222
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + FL + L + + V +NG + LL+ D ++P + G+E
Sbjct: 2 RILIIEDESGIADFLREGLEEECFAVDVAHNGREGLSMALINEYDLLIVDWLLPGLSGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ + + V+F+T + + KPF +L+ + L +
Sbjct: 62 VCRQFRKEHAQVPVIFLTAKGDLDDVIFGLESGANDYMKKPFAFEELLARIRVQLRL 118
>gi|16273595|ref|NP_439850.1| transcriptional regulatory protein [Haemophilus influenzae Rd KW20]
gi|145629192|ref|ZP_01784991.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
gi|145633643|ref|ZP_01789370.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
gi|145639135|ref|ZP_01794742.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
gi|145641031|ref|ZP_01796612.1| transcriptional regulatory protein [Haemophilus influenzae R3021]
gi|148827131|ref|YP_001291884.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
gi|260581049|ref|ZP_05848871.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae RdAW]
gi|1176110|sp|P45337|QSEB_HAEIN RecName: Full=Transcriptional regulatory protein qseB
gi|1574562|gb|AAC23354.1| transcriptional regulatory protein (ygiX) [Haemophilus influenzae
Rd KW20]
gi|144978695|gb|EDJ88418.1| transcriptional regulatory protein [Haemophilus influenzae 22.1-21]
gi|144985520|gb|EDJ92336.1| transcriptional regulatory protein [Haemophilus influenzae 3655]
gi|145271697|gb|EDK11607.1| transcriptional regulatory protein [Haemophilus influenzae PittII]
gi|145274192|gb|EDK14057.1| transcriptional regulatory protein [Haemophilus influenzae 22.4-21]
gi|148718373|gb|ABQ99500.1| transcriptional regulatory protein [Haemophilus influenzae PittGG]
gi|260092289|gb|EEW76230.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae RdAW]
gi|309750716|gb|ADO80700.1| Probable two-component regulator,transcriptional regulatory
component QseB [Haemophilus influenzae R2866]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L L K G+ V +G + + P+ ++ D+ +P++DG+E
Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+ +T + L KPF L ++ + L+ +
Sbjct: 62 VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
>gi|330991829|ref|ZP_08315778.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
SXCC-1]
gi|329760850|gb|EGG77345.1| Transcriptional regulatory protein ompR [Gluconacetobacter sp.
SXCC-1]
Length = 239
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R L + L + V + +G A + E + L++ D+++P G++
Sbjct: 6 HILIIDDDREIRDLLARFLERNELRVTTARDGHEARRRWSEGHYQLVILDLMLPGESGLD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++R ++ ++ +T + KPF+ R+L+ + +L
Sbjct: 66 ISRWLRTQ-ANVPIVMLTAMGDDTDRIIGLELGADDYVPKPFNPRELLARIRAVLRR 121
>gi|298675227|ref|YP_003726977.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
gi|298288215|gb|ADI74181.1| response regulator receiver protein [Methanohalobium evestigatum
Z-7303]
Length = 352
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ D+ + +L Y+ + +G A D +E L+L DI+MP+MDG E
Sbjct: 228 KILIVDDEPDIPELIKLSLSNEPYDFIVAYSGEQAVDMTLQELPDLILLDIMMPDMDGYE 287
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ ++ V +SKPF R+L + ++
Sbjct: 288 VVEELNKDKSTRDIAIIMVSAKTRVEDKLKGMELGIDDYISKPFDERELNARIKMVMKR 346
>gi|241766028|ref|ZP_04763947.1| two component transcriptional regulator, winged helix family
[Acidovorax delafieldii 2AN]
gi|241363977|gb|EER59246.1| two component transcriptional regulator, winged helix family
[Acidovorax delafieldii 2AN]
Length = 247
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ M LI L AGY +G VR L+L DI++P DG E
Sbjct: 22 HILVVEDEPKMAALLIDYLHAAGYRADRLADGREVAAFVRGRQPDLVLLDIMLPGRDGFE 81
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK-PFHLRDLVNEVNRLLTI 120
+ R D+ ++ +T A A + K PF R++V V +L
Sbjct: 82 VCRELRG-FSDVPIIMLTARADEADRLAGLDLGADDYICKTPFSPREIVARVKAILRR 138
>gi|86160425|ref|YP_467210.1| two component transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776936|gb|ABC83773.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-C]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ D+ L L +G+E + G A +R L+L D+++P++ G E+
Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ +T ++KPF +R+LV + +L
Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRR 121
>gi|91791919|ref|YP_561570.1| response regulator receiver [Shewanella denitrificans OS217]
gi|91713921|gb|ABE53847.1| two component transcriptional regulator, winged helix family
[Shewanella denitrificans OS217]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD + ++ L GY V + G A + + +E L+L D+++P +G
Sbjct: 5 KHILVVEDDTSLAEWISDYLLDHGYGVTVASQGDYALEMIADELPDLVLLDVMIPVKNGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + A E ++F+T L+KP + L+ + LL
Sbjct: 65 DVCKEAREFYSG-PILFMTACVEDGDEIQGLEMGADDYLTKPIRPQVLLARIKALLRR 121
>gi|37523780|ref|NP_927157.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
gi|35214785|dbj|BAC92152.1| two-component response regulator [Gloeobacter violaceus PCC 7421]
Length = 611
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLAEDD+ + L + L + V +G +A++ + + L+L D+++P++DGI
Sbjct: 2 KVLLAEDDESVAEALREFLVHQRHLVDVAGDGETAWNLIELGNYDLILLDVLLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+ +TG A + KP L +L + LL
Sbjct: 62 LCRRLRSKGHRMPVLLLTGLDASTDKVAGLDAGADDYVVKPCDLSELAARIRALLRR 118
Score = 95.2 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+++ +DD + L L G ++++ + + ++ LL+ D+ MP + G
Sbjct: 487 TAKVMIVDDDAPLLAALRALLAPWGLQLLTLADPLQFWRQLESFRPDLLVLDVEMPHLSG 546
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IEL R L V+F++ + A ++KP +L + L
Sbjct: 547 IELCRIVRGDPQWQWLPVLFLSAHTDEETVERAWAGGADDFVAKPVSGPNLAMRILNRLE 606
Query: 120 IK 121
+
Sbjct: 607 RR 608
Score = 52.8 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 36 ASAYDKVREEPFSLLLTDI------VMPEMD---GIELARRATELDPDLKVMFITGFAAV 86
+A+ + L++ D+ +P D L P + + ++ +
Sbjct: 389 EAAHVWMEHHRPDLVVLDLHPALAERLPAADEAARWSLLGELAARRPPIPALVLSDRHSF 448
Query: 87 ALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + L KP +V V R+L
Sbjct: 449 EERIEATRLGSRAFLEKPVGPERVVGTVERVLER 482
>gi|330831329|ref|YP_004394281.1| winged helix family two component transcriptional regulator
[Aeromonas veronii B565]
gi|328806465|gb|AEB51664.1| Two component transcriptional regulator, winged helix family
[Aeromonas veronii B565]
Length = 222
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + ++ L AG+ + +G +A + E+ F +++ D++MP +DG
Sbjct: 2 KILVVEDNPQVAETIMDYLELAGHRLDCAYHGQAALQLLEEQRFDVIIMDVMMPRLDGFS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R E V+F+T ++ L KPF + +L + L
Sbjct: 62 TVARLREQGIATPVLFLTARDSLEDKLAGFKAGGDDYLVKPFAMEELEVRLQAL 115
>gi|320159178|ref|YP_004191556.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
gi|319934490|gb|ADV89353.1| DNA-binding response regulator GltR [Vibrio vulnificus MO6-24/O]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 1/112 (0%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+D D+R L LGKAG++V NG + K+ L++ DI+MP DG L ++
Sbjct: 2 DDHQDLREALSDYLGKAGFDVQCAENGQVMWKKLELCAPDLIILDIMMPGDDGFTLCQKI 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++ +T A A ++K F R+L+ + +L
Sbjct: 62 R-RYSDVPIIMLTAVAEEADRVAGLEMGADDYMTKSFSPRELLARIKTILRR 112
>gi|311029174|ref|ZP_07707264.1| two component transcriptional regulator, winged helix family
protein [Bacillus sp. m3-13]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ ++ RF+ L G+ V + +G D +E + ++L D+++P + G+E
Sbjct: 3 RVLIIEDEKNLARFIELELQYEGFNVATSYDGREGLDLALKEDWDIILLDLMLPGLSGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + ++ +T +V +SKPF + +L+ + L
Sbjct: 63 VCRRIRAA-KETPIIMLTARDSVMDKVSGLDSGADDYMSKPFAIEELLARIRALFRR 118
>gi|296169906|ref|ZP_06851518.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295895462|gb|EFG75164.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 257
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+ V +NG A + +L+ DI++P++DG+
Sbjct: 33 RVLLVDDEPALTNLVKMALHYEGWVVDIAHNGREAMATFDKVSPDVLVLDIMLPDVDGLR 92
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + D +F+T +V ++KPF L +LV + LL
Sbjct: 93 ILERVRQSDAYTPTLFLTARDSVMDRVTGLTAGADDYMTKPFSLEELVARLRGLLRR 149
>gi|269977562|ref|ZP_06184529.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
gi|307701335|ref|ZP_07638356.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
FB024-16]
gi|269934165|gb|EEZ90732.1| sensory transduction protein regX3 [Mobiluncus mulieris 28-1]
gi|307613496|gb|EFN92744.1| putative Sensory transduction protein regX3 [Mobiluncus mulieris
FB024-16]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+LL EDD + L +ALG+ GYEV + G +A +V +++ D+ +P+MD
Sbjct: 1 MT-KVLLVEDDPAIAEPLARALGREGYEVSAQTTGGAALQQV--GGCDIVILDLGLPDMD 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR + ++ +T ++KPF L +L+ V LL
Sbjct: 58 GLDVARTIRAQGITIPILILTARTGEVDMVVGLDSGADDYVTKPFRLGELLARVRALLRR 117
>gi|218259868|ref|ZP_03475413.1| hypothetical protein PRABACTJOHN_01072 [Parabacteroides johnsonii DSM
18315]
gi|218224872|gb|EEC97522.1| hypothetical protein PRABACTJOHN_01072 [Parabacteroides johnsonii DSM
18315]
Length = 1310
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ ++R +L L +V +G A++ + + ++++D++MP MDG EL
Sbjct: 1062 LVVEDEPELRSYLFSVLQAEFKDVYVAGDGEEAWEFLGQSQPDIIVSDVMMPRMDGYELC 1121
Query: 66 RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR + V+ +T A A + + L+KPF + L+ + +L +++
Sbjct: 1122 RRVKNNLKVSHIPVVLLTAKADPASSVEGYKSGADIYLAKPFDVDSLMVILRNVLRLRD 1180
>gi|193214323|ref|YP_001995522.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
gi|193087800|gb|ACF13075.1| multi-sensor hybrid histidine kinase [Chloroherpeton thalassium ATCC
35110]
Length = 1629
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AED+ ++ +++ L K GY NGA + ++ + + L+L D+ MPEMDG+
Sbjct: 1346 RILIAEDNVVNQKLVLRILEKVGYRADVAANGAEVIEALKSKTYDLILMDVQMPEMDGLT 1405
Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL--- 117
R + P L+ ++ +T A LSKP DL +++
Sbjct: 1406 ATRYICQNWPRLERPFIIAMTANAMKGDREACLEAGMDDYLSKPVRFDDLQKALDKWGHE 1465
Query: 118 LTIKN 122
L KN
Sbjct: 1466 LEHKN 1470
Score = 89.8 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPEMDG 61
+ L+ +D+ RR L G + +G +A + + F + + D MPEMDG
Sbjct: 1200 KHALIVDDNATNRRILSLQSATWGMSSHTVGSGKNALELIHSGMHFDVGILDFHMPEMDG 1259
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+ LA +L DL ++ +T ++ + L+KP L + +
Sbjct: 1260 LMLAMELRKLPQTQDLPLVMLTSAGNRETVSETVGVGFSAFLNKPIKQSQLYDVL 1314
>gi|78044512|ref|YP_360675.1| sigma-54 dependent transcriptional regulator/response regulator
[Carboxydothermus hydrogenoformans Z-2901]
gi|77996627|gb|ABB15526.1| sigma-54 dependent transcriptional regulator/response regulator
[Carboxydothermus hydrogenoformans Z-2901]
Length = 443
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/119 (33%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 1 MNQKI--LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + I L+ +D+++ R LI+ L + GYEV G A ++EE F L + DI MP
Sbjct: 1 MKETIKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFLKEETFHLAIFDIKMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DGIEL +RA +LD +L+V+ +TG + + L+KP +L +L + +
Sbjct: 61 IDGIELLQRARQLDENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNLAELEITLQKA 119
>gi|127513623|ref|YP_001094820.1| two component transcriptional regulator [Shewanella loihica PV-4]
gi|126638918|gb|ABO24561.1| two component transcriptional regulator, winged helix family
[Shewanella loihica PV-4]
Length = 226
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L + L A Y + ++G + RE P+ + D+ +P++DGI
Sbjct: 2 RLLLVEDDLALQENLRQHLLDANYTLDIASDGEEGLFQGREYPYDAAIIDVGLPKLDGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E D ++ +T + L+KPFH +LV + L+
Sbjct: 62 LIARLREEGIDYPILILTARDNWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>gi|326801362|ref|YP_004319181.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
gi|326552126|gb|ADZ80511.1| two component transcriptional regulator, winged helix family
[Sphingobacterium sp. 21]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED + + + L GY+V ++G D + F L++ D+++P +
Sbjct: 1 MANKILVIEDQSKLASLIQRGLSADGYDVRIASDGELGLDMIYHNAFDLIVLDVMLPGIS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ + + + + ++ +T +A + KPF +L + L+
Sbjct: 61 GIEVCQLLRKENNPVPILMLTALSATNNVVTGLDSGADDYMVKPFKFEELKARIRTLVRR 120
Query: 121 KN 122
N
Sbjct: 121 AN 122
>gi|319745720|gb|EFV98017.1| DNA-binding response regulator [Streptococcus agalactiae ATCC
13813]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + L GY V +G + + + L+L DI++P+ G+
Sbjct: 2 RLLVVEDEKSIAEAIQALLADKGYSVDLVFDGDDGLEYILTGLYDLVLLDIMLPKRSGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ +R E + ++F+T + + ++KPF +L+ + L +
Sbjct: 62 VLKRVREAGLETPIIFLTAKSQTYDKVNGLDLGADDYITKPFEADELLARIR--LRTR 117
>gi|317507256|ref|ZP_07965002.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
gi|316254450|gb|EFV13774.1| response regulator receiver domain-containing protein [Segniliparus
rugosus ATCC BAA-974]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ ED++ + L L K G+E V +G +A + ++L D+++P M
Sbjct: 1 MT-RVLIVEDEESLADPLAFLLRKEGFETVIAGDGPTALTEFDRTGADIVLLDLMLPGMG 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + V+ +T + ++KP+ R+L + +L
Sbjct: 60 GNDVCKQLRAR-SSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELTARIRAVLRR 118
>gi|315283525|ref|ZP_07871693.1| regulatory protein VanR [Listeria marthii FSL S4-120]
gi|313612832|gb|EFR86806.1| regulatory protein VanR [Listeria marthii FSL S4-120]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+A+DD + L GY + +GA + V+E+ +L++ DI+MPEM+
Sbjct: 3 MTTSILIADDDXXXXDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILDIMMPEMN 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ R + ++ ++ A + KPF+ +L V +L
Sbjct: 63 GLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELSVRVKAILRR 122
>gi|227873308|ref|ZP_03991572.1| response regulator [Oribacterium sinus F0268]
gi|227840845|gb|EEJ51211.1| response regulator [Oribacterium sinus F0268]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ +DD + + L GY+V+ +G + +E L++ D++MP +DGI
Sbjct: 2 QKILVCDDDKQIVEAISIYLTGEGYQVIKAFDGYDVLKILEKENVDLIILDVMMPGLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++KPF+ ++V V L
Sbjct: 62 RTTLKIREK-SSIPIIILSAKGEDTDKILGLNIGADDYITKPFNPLEMVARVKSQLRR 118
>gi|220919230|ref|YP_002494534.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219957084|gb|ACL67468.1| two component transcriptional regulator, winged helix family
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ D+ L L +G+E + G A +R L+L D+++P++ G E+
Sbjct: 4 VLLVDDERDLLSLLDFNLRASGFETLLATTGEQALSHLRRRVPDLVLLDVMLPDVSGTEV 63
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + V+ +T ++KPF +R+LV + +L
Sbjct: 64 CRQIKSDPRTRHVPVVMLTAKGDEVDRVVGFELGADDYVTKPFSVRELVLRLKAVLRR 121
>gi|215433483|gb|ACJ66707.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
fulvus HW-1]
Length = 474
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 58/114 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+ ++R+ L L + G++V NG + + +++TD+VMP++ G+E
Sbjct: 3 KVLVIDDEANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ +PD+ V+ IT V D+ ++KPF +L + V +
Sbjct: 63 VLGTIRAANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKA 116
>gi|187776697|ref|ZP_02993170.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
15579]
gi|187775356|gb|EDU39158.1| hypothetical protein CLOSPO_00212 [Clostridium sporogenes ATCC
15579]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++I L EDD + + LI L G+ V + A + F L L DI +P+ +G
Sbjct: 2 KRIFLVEDDKAIGKNLILLLRSEGFTVTHAPTRSEALAALAGNKFDLALIDISLPDGNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E DL V+F+T + A ++KPF R+L+ + L
Sbjct: 62 TVCTEIKE-TQDLPVIFLTASSDEASVVTGLNMGADDYITKPFRPRELIARIRTALR 117
>gi|59712745|ref|YP_205521.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
gi|59480846|gb|AAW86633.1| chitin sensor histidine kinase ChiS [Vibrio fischeri ES114]
Length = 1126
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+A+D+ + L L GY V N+G EE LLL D++MP M G E+
Sbjct: 722 LVADDEPVNLQVLTSFLKLEGYRVKVANDGPETLKVFEEEKPELLLLDVMMPGMSGYEVC 781
Query: 66 RRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E L ++ +T LSKPF+ ++L + L
Sbjct: 782 QSLRETYSHSELPIIMLTALNQTQDRIRGFESGANDYLSKPFNKQELAARIKAHLK 837
>gi|12484568|gb|AAG09631.1| CztR [Pseudomonas fluorescens]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L + L ++GY V +NG + + L++ D+ +P DG E
Sbjct: 2 RILVVEDEQKTADYLQQGLSESGYVVDCASNGIDGLHLAGQHAYELVILDVNLPGKDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +VM +T +A L KPF +L+ V LL
Sbjct: 62 VLEQLRRNGTQ-RVMMLTARGRLADKIKGLDMGADDYLVKPFEFPELLARVRTLLRR 117
>gi|332829768|gb|EGK02414.1| hypothetical protein HMPREF9455_01684 [Dysgonomonas gadei ATCC
BAA-286]
Length = 1268
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 2 NQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
++K IL+ ED+++++ FL +L + Y + N+G A++ + + L+++DI+MP M
Sbjct: 1019 SKKMQILVVEDNNELQDFLKNSLQEL-YNISVANDGEVAWNLINRKMPDLIISDIMMPNM 1077
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG L + + V+ +T + + ++KPF + L + +
Sbjct: 1078 DGFGLCQLIKSTFQTSHIPVILLTALSDKTKQLEGLGLGADDYITKPFDITVLTKRIESI 1137
Query: 118 LTIK 121
L +
Sbjct: 1138 LKNR 1141
>gi|330816594|ref|YP_004360299.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia gladioli BSR3]
gi|327368987|gb|AEA60343.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia gladioli BSR3]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A + E F L++ D+++P MDG
Sbjct: 2 RILVVEDDAEIGEAIGSRLTRLGHAVDLECDGAAASSLLGVESFDLVVLDVMLPSMDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T +A+ L KPF R+L V LL
Sbjct: 62 ILRRLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|325954800|ref|YP_004238460.1| two component transcriptional regulator, winged helix family
[Weeksella virosa DSM 16922]
gi|323437418|gb|ADX67882.1| two component transcriptional regulator, winged helix family
[Weeksella virosa DSM 16922]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M KILL +D+ D+ F+ L K G+EV + NG K + L+L D++MP+M
Sbjct: 1 MKHYKILLVDDEPDILEFVTYNLEKEGFEVETATNGLEGIKKAKVFKPHLILMDVMMPQM 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+E +LD D ++F++ + + KP + LV+++ L
Sbjct: 61 DGVEACGELRKLDAFKDTLIVFLSARGEDFSQLAAYDAGANDYIVKPIKPKILVSKLKAL 120
Query: 118 LTIK 121
L IK
Sbjct: 121 LKIK 124
>gi|302842110|ref|XP_002952599.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
nagariensis]
gi|300262238|gb|EFJ46446.1| hypothetical protein VOLCADRAFT_93268 [Volvox carteri f.
nagariensis]
Length = 1021
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 53/121 (43%), Gaps = 4/121 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMDGI 62
+L +DD + + L GY+V +G+ A D +++ ++L DI+MP+M G
Sbjct: 539 VLSVDDDPINQMVVENLLSPEGYKVEQAMSGSEALDFLKKTATLPDVILLDIMMPDMSGY 598
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + ++ ++ + + KPFH ++L++ + +
Sbjct: 599 EVCQEIRRRYSAVSIPIIMVSAKGHPEHVMKGLEAGSVDYVKKPFHRQELLSRIRAQVRN 658
Query: 121 K 121
+
Sbjct: 659 R 659
>gi|295704707|ref|YP_003597782.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294802366|gb|ADF39432.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + L +E+ +G +K E F L++ DI++P++ G
Sbjct: 2 KKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ D+ ++ ++ ++KPF +LV V L
Sbjct: 62 EVCKQIRAA-KDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLAR 118
>gi|257469073|ref|ZP_05633167.1| DNA-binding response regulator [Fusobacterium ulcerans ATCC 49185]
gi|317063319|ref|ZP_07927804.1| two-component system response regulator [Fusobacterium ulcerans
ATCC 49185]
gi|313688995|gb|EFS25830.1| two-component system response regulator [Fusobacterium ulcerans
ATCC 49185]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ + + L + + +G +A + E L+L DI +P+M+
Sbjct: 1 MTKKILIVEDEKNLIKVIEDTLLEESFLTYKALDGETALEMFYEHNPDLILLDINLPKMN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + ++ ++ +T + + ++KPF L+ L ++ ++L I
Sbjct: 61 GWEVCQNIRKE-SNIPIIMMTARDSEIDELKGLSIGADDYITKPFSLKVLNIKIKKMLKI 119
>gi|239942982|ref|ZP_04694919.1| two component transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|239989442|ref|ZP_04710106.1| two component transcriptional regulator [Streptomyces roseosporus
NRRL 11379]
Length = 236
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + AL G+E G +A +V L++ D+++P+ GI+
Sbjct: 3 RVLVVDDESYLADLVATALRYEGFETAVAGTGGAAVAQVETFRPHLIVMDVMLPDGSGID 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+F+T A ++KPF L +L+ + +L
Sbjct: 63 ATRRLRGSGCLAPVVFLTARDATEDKIAGLTVGGDDYVTKPFSLEELIARIRAVLRR 119
>gi|210620624|ref|ZP_03292148.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
gi|210155233|gb|EEA86239.1| hypothetical protein CLOHIR_00091 [Clostridium hiranonis DSM 13275]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + K+LLAED+ ++ + L L Y V + +G A + + ++ DI+MP++
Sbjct: 1 MKKMKLLLAEDEKELSKALKAILESNRYSVDAVYDGEDAIYYMENSEYDAVILDIMMPKV 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI + E D+ ++ +T + V L+KPF ++L+ + +LT
Sbjct: 61 DGITALKTVREKGIDVPIIMLTAKSEVDDKVLGLDSGANDYLTKPFSAKELLARLR-VLT 119
Query: 120 IK 121
+
Sbjct: 120 RE 121
>gi|209519930|ref|ZP_03268711.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209499632|gb|EDZ99706.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 52/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + AL A Y +G +A + + + L+L D+ +P DG+E
Sbjct: 2 RVLLVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D + ++ IT + + KPF + +L+ + +L K
Sbjct: 62 VLVRIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRK 119
>gi|170761007|ref|YP_001787015.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
gi|169407996|gb|ACA56407.1| DNA-binding response regulator [Clostridium botulinum A3 str. Loch
Maree]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D+D++R + L G V +G A + + L++ DI+MP+MDGI+
Sbjct: 5 KVLIVDDEDEIREAVEIYLKNEGIAVFKAKDGIDALMLLEDHDIHLIIMDIMMPKMDGIK 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + ++KPF++ +LV V L
Sbjct: 65 ATFKIRE-NKNIPIIMLSAKSEDTDKILGLNIGADDYVTKPFNMLELVARVKSQLRR 120
>gi|167032462|ref|YP_001667693.1| histidine kinase [Pseudomonas putida GB-1]
gi|166858950|gb|ABY97357.1| histidine kinase [Pseudomonas putida GB-1]
Length = 785
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ + L K G +V GA A + ++ + F L+L D MP MDG E
Sbjct: 665 RILLVEDNPVNQLVAKGMLAKLGCQVQLATQGAEALELLQHDDFDLVLMDCNMPVMDGYE 724
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+RR + P+L ++ +T A A L+KPF +L+ ++
Sbjct: 725 ASRRIRQSGRWPELPIVALTANAMPEERERCRAAGMNDYLAKPFRREELLALIDHW 780
>gi|110798945|ref|YP_695660.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC
13124]
gi|168209564|ref|ZP_02635189.1| DNA-binding response regulator KdpE [Clostridium perfringens B str.
ATCC 3626]
gi|168213944|ref|ZP_02639569.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE
str. F4969]
gi|182626561|ref|ZP_02954308.1| DNA-binding response regulator KdpE [Clostridium perfringens D str.
JGS1721]
gi|110673592|gb|ABG82579.1| DNA-binding response regulator KdpE [Clostridium perfringens ATCC
13124]
gi|170712322|gb|EDT24504.1| DNA-binding response regulator KdpE [Clostridium perfringens B str.
ATCC 3626]
gi|170714541|gb|EDT26723.1| DNA-binding response regulator KdpE [Clostridium perfringens CPE
str. F4969]
gi|177908095|gb|EDT70665.1| DNA-binding response regulator KdpE [Clostridium perfringens D str.
JGS1721]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ +R F+ L Y+ + NG+ + +++ D+ +P+MD
Sbjct: 1 MKPAILVIEDEKAIRNFVTATLEINSYKCHTAFNGSQGMILAISKRPDIIILDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ ++ E + ++ ++ + ++ L+KPF + +L+ + +
Sbjct: 61 GIEIIKKVRE-WSNCPIIVVSARSEDRDKIEALDLGADDYLTKPFSVDELMARIRVAIRK 119
Query: 121 KN 122
N
Sbjct: 120 MN 121
>gi|301160512|emb|CBW20042.1| Two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|323132346|gb|ADX19776.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|256425390|ref|YP_003126043.1| Fis family transcriptional regulator [Chitinophaga pinensis DSM
2588]
gi|256040298|gb|ACU63842.1| putative two component, sigma54 specific, transcriptional
regulator, Fis family [Chitinophaga pinensis DSM 2588]
Length = 394
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 61/118 (51%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ +R+ L + L GY+V +GA + +++ + +L DI MP+MDG+E
Sbjct: 4 ILIIDDEKSIRKTLSEILSYEGYKVEEAADGAEGFKLFKDKQYDAVLCDIKMPKMDGLEF 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+A E++ D+ ++ ++G + ++ +SKP L L+ + + N
Sbjct: 64 LEKAREINTDVPIIMVSGHGNIDTAVEAVKKGAYDYISKPPDLNRLLITLRNAMDKTN 121
>gi|262203938|ref|YP_003275146.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262087285|gb|ACY23253.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + R L L G+ V + +G A +++ D+ +P+MDG+
Sbjct: 6 RVLVVDDEPQLLRALRINLNARGFAVTTAADGREALTAASRMDPHVVVLDLGLPDMDGLT 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ ++ + A + ++KPF + + + + +
Sbjct: 66 VLEGLRG-WTTVPVIVLSARSDAADKVSALDAGADDYVTKPFGMEEFLARLRAAVRR 121
>gi|255099493|ref|ZP_05328470.1| two-component response regulator [Clostridium difficile QCD-63q42]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
MN +L+ +DD ++ + K + + ++ + GA V + SL++ DI+MP+
Sbjct: 1 MNS-VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPD 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG ++ ++ E ++ V+ +T L+KPF + +L+ VN L+
Sbjct: 60 IDGFQVLKKIRE-TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLI 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|323343830|ref|ZP_08084057.1| DNA-binding response regulator [Prevotella oralis ATCC 33269]
gi|323095649|gb|EFZ38223.1| DNA-binding response regulator [Prevotella oralis ATCC 33269]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 51/114 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ + + L +++ +G + E +++ D++MP MDG E+
Sbjct: 6 VLLVEDEQTLAMIIRDTLDAQDFDIAVACDGQEGLRLLAEVHPDVVVADVMMPRMDGFEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R D V+F+T +AV L KPF +++L+ + LL
Sbjct: 66 VHRLRRTDKHTPVLFLTARSAVNDVVHGFELGANDYLKKPFGMQELIVRIRALL 119
>gi|304312785|ref|YP_003812383.1| Transcriptional activator [gamma proteobacterium HdN1]
gi|301798518|emb|CBL46748.1| Transcriptional activator [gamma proteobacterium HdN1]
Length = 449
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 58/113 (51%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD D+R + + L GY+V NG +A + +PFS++++D+ MP MDG +L
Sbjct: 6 ILLVEDDADLRDAVSETLSLKGYDVEEAENGEAALTAMSAQPFSMVISDVNMPRMDGFQL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R+ P + V+ +T + V + L KPF + L+ V R
Sbjct: 66 LRKIASEWPQIPVVIVTAYGNVENAVQAIRNGAVDFLEKPFSIEKLLETVARH 118
>gi|298483802|ref|ZP_07001975.1| one-component system sensor histidine kinase/response regulator
[Bacteroides sp. D22]
gi|298270096|gb|EFI11684.1| one-component system sensor histidine kinase/response regulator
[Bacteroides sp. D22]
Length = 1358
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL ED+ + R FL + L Y+++ +G K EE +L+++DI+MP++DGI
Sbjct: 1106 KKLLLVEDNQEFRTFLKEQLEDF-YQIIEAADGEEGERKAIEENPNLIISDIMMPKVDGI 1164
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + V+ +T A + +S +SKPF+ L+ + +L+
Sbjct: 1165 ELCRRIKTNVQTSHIPVILLTARTADDIKINSYEVGADSYMSKPFNFDMLMVRIEKLIEQ 1224
Query: 121 K 121
+
Sbjct: 1225 Q 1225
>gi|291568215|dbj|BAI90487.1| two-component hybrid histidine kinase [Arthrospira platensis
NIES-39]
Length = 394
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + R L + L + GY+V NG A V E L+L DI+MPE+DG ++
Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ + ++ ++F++ + + ++KPFH+++++ V LTI
Sbjct: 73 AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDLGGVDYITKPFHVQEVLARVRTQLTI 130
>gi|219666561|ref|YP_002456996.1| signal transduction histidine kinase, LytS [Desulfitobacterium
hafniense DCB-2]
gi|219536821|gb|ACL18560.1| signal transduction histidine kinase, LytS [Desulfitobacterium
hafniense DCB-2]
Length = 1022
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ R L L Y+V + +G A + ++ E F LLLTD++MP M GI
Sbjct: 694 KKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSGI 752
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + +L ++ T + ++KPF ++ V LL +
Sbjct: 753 ELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLLKL 812
>gi|110642074|ref|YP_669804.1| transcriptional regulatory protein YedW [Escherichia coli 536]
gi|110805939|ref|YP_689459.1| transcriptional regulatory protein YedW [Shigella flexneri 5 str.
8401]
gi|227885603|ref|ZP_04003408.1| response regulator [Escherichia coli 83972]
gi|237705927|ref|ZP_04536408.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
gi|300940426|ref|ZP_07155010.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
gi|300975470|ref|ZP_07173018.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
gi|300994173|ref|ZP_07180744.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
gi|301050665|ref|ZP_07197529.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
gi|306814209|ref|ZP_07448375.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
gi|331647562|ref|ZP_08348654.1| transcriptional activator protein CopR [Escherichia coli M605]
gi|26108643|gb|AAN80846.1|AE016762_99 Probable transcriptional Regulatory protein yedW [Escherichia coli
CFT073]
gi|110343666|gb|ABG69903.1| probable transcriptional regulatory protein YedW [Escherichia coli
536]
gi|110615487|gb|ABF04154.1| putative 2-component transcriptional regulator [Shigella flexneri 5
str. 8401]
gi|226900684|gb|EEH86943.1| transcriptional regulatory protein YedW [Escherichia sp. 3_2_53FAA]
gi|227837176|gb|EEJ47642.1| response regulator [Escherichia coli 83972]
gi|281601411|gb|ADA74395.1| Two component heavy metal response transcriptional regulator,
winged helix family precursor [Shigella flexneri
2002017]
gi|300297662|gb|EFJ54047.1| transcriptional activator protein Irlr [Escherichia coli MS 185-1]
gi|300304997|gb|EFJ59517.1| transcriptional activator protein Irlr [Escherichia coli MS 200-1]
gi|300410360|gb|EFJ93898.1| transcriptional activator protein Irlr [Escherichia coli MS 45-1]
gi|300454767|gb|EFK18260.1| transcriptional activator protein Irlr [Escherichia coli MS 21-1]
gi|305852368|gb|EFM52819.1| transcriptional regulatory protein YedW [Escherichia coli NC101]
gi|307553979|gb|ADN46754.1| heavy metal response regulator [Escherichia coli ABU 83972]
gi|312946560|gb|ADR27387.1| transcriptional regulatory protein YedW [Escherichia coli O83:H1
str. NRG 857C]
gi|315286723|gb|EFU46148.1| transcriptional activator protein Irlr [Escherichia coli MS 110-3]
gi|315290199|gb|EFU49579.1| transcriptional activator protein Irlr [Escherichia coli MS 153-1]
gi|315296452|gb|EFU55752.1| transcriptional activator protein Irlr [Escherichia coli MS 16-3]
gi|323956362|gb|EGB52105.1| heavy metal response regulator [Escherichia coli H263]
gi|324005926|gb|EGB75145.1| transcriptional activator protein Irlr [Escherichia coli MS 57-2]
gi|324013430|gb|EGB82649.1| transcriptional activator protein Irlr [Escherichia coli MS 60-1]
gi|331043286|gb|EGI15424.1| transcriptional activator protein CopR [Escherichia coli M605]
Length = 260
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|15896015|ref|NP_349364.1| response regulator [Clostridium acetobutylicum ATCC 824]
gi|15025797|gb|AAK80704.1|AE007774_1 Response regulator (CheY receiver domain and HTH-type DNA-binding
domain) [Clostridium acetobutylicum ATCC 824]
gi|325510169|gb|ADZ21805.1| Response regulator (CheY receiver domain and HTH-type DNA-binding
domain) [Clostridium acetobutylicum EA 2018]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D++ + FL L G+ V + NG A R+ +L++ D+++P M+G E+
Sbjct: 11 IMVVDDEEHIVEFLKMGLEAEGFTVYTAFNGNDAVIYSRKLNPNLIILDVMLPYMNGYEV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ ++ +T + + KPF ++L+ +N L
Sbjct: 71 CSLIKKA-SNIPIIMLTAKDEIDDKVLGLNLGADDYMIKPFSFKELLARINARLR 124
>gi|300726093|ref|ZP_07059550.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
gi|299776563|gb|EFI73116.1| transcriptional regulatory protein ResD [Prevotella bryantii B14]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +IL+ +D++D+ L L GY V + N+ A + + LLL D++M M G
Sbjct: 5 SYRILVVDDEEDLCEILKFNLEMEGYIVNTANSAEEALT-LDIASYHLLLLDVMMGGMSG 63
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
LA++ + ++F+T ++KPF +R+++ + +L
Sbjct: 64 FALAKQLKSNATTASIPIVFLTAKDTENDTVTGFTLGADDYIAKPFSIREVILRIKAVLR 123
Query: 120 I 120
Sbjct: 124 R 124
>gi|293602287|ref|ZP_06684734.1| two component response regulator IrlR [Achromobacter piechaudii
ATCC 43553]
gi|292819316|gb|EFF78350.1| two component response regulator IrlR [Achromobacter piechaudii
ATCC 43553]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + +L +AL + Y V ++G S RE + L+L D+++P MDG +
Sbjct: 2 KILVVEDERKLAEYLKRALSEHNYVVDVASDGVSGLHLARETQYDLILLDVMLPGMDGFD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D + V+ +T V L KPF L +L+ V L +
Sbjct: 62 VLHELRKSDR-VPVLMLTARDKVEDRVRGLQDGADDYLVKPFALSELLARVLALGRRR 118
>gi|291458362|ref|ZP_06597752.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
oral taxon 078 str. F0262]
gi|291418895|gb|EFE92614.1| subtilin biosynthesis regulatory protein SpaR [Oribacterium sp.
oral taxon 078 str. F0262]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ ++ L L G++V++ NGA +++ L++ DI+MPEMD
Sbjct: 1 MS-KILIIDDEKELVTLLQDELEARGHQVLAAYNGADGVSLAKKQ-PELIVLDIMMPEMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ R+ + ++F++ A + + +SKPF LR+L+ ++ L
Sbjct: 59 GFEVCRKIRDELL-CPILFLSAKQAESDKIRALTLGGDDYISKPFGLRELLARIDANLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|260221594|emb|CBA30315.1| hypothetical protein Csp_C22930 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 433
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
+L+ +D + + L Y+V NNG A V E P L+L DI+MP MDG
Sbjct: 59 TVLVVDDTPENLLLMQSLLRD-DYKVKGANNGERALKIVAGEAPPDLILLDIMMPGMDGY 117
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + V+F+T + + A ++KP ++ V L +
Sbjct: 118 EVCRRIKADPKARHIPVIFLTAKSQTEDEAFGLSLGAADYITKPISPPIVLARVRNQLAV 177
Query: 121 K 121
K
Sbjct: 178 K 178
>gi|209522750|ref|ZP_03271308.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira maxima CS-328]
gi|209496799|gb|EDZ97096.1| response regulator receiver modulated diguanylate cyclase
[Arthrospira maxima CS-328]
Length = 259
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD D + L Y + +G A + L+L D++MP MDGIE+
Sbjct: 4 ILIVDDDPDNFDVVETCLIDENYHLHYAYSGQDALSVINVIKPDLILLDVMMPVMDGIEV 63
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + ++ +T ++ + ++KP + +L+ + +L IK
Sbjct: 64 CRRIKAMGEWKGTPIIMVTALSSTESLAECLGAGADDFIAKPVNGLELLARIRSMLRIK 122
>gi|119486748|ref|ZP_01620723.1| regulatory component of sensory transduction system [Lyngbya sp.
PCC 8106]
gi|119456041|gb|EAW37174.1| regulatory component of sensory transduction system [Lyngbya sp.
PCC 8106]
Length = 456
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D L L GY+V ++G +A V E+ L+L DI MPEMDG
Sbjct: 12 ILVVDDYLDNLTLLTIILNNLGYQVRQADSGKTALKAVEEKLPDLILLDIQMPEMDGYSC 71
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ D+ ++F++ F ++KPF L +++ V + L
Sbjct: 72 CQQLKANPKTKDIPIIFLSAFNNAVDKVKGFEVGGEDYITKPFLLEEVIARVEKQL 127
>gi|50122111|ref|YP_051278.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
atrosepticum SCRI1043]
gi|49612637|emb|CAG76087.1| two-component system response regulator [Pectobacterium
atrosepticum SCRI1043]
Length = 242
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L+ L A Y NG + VR+ SL+L D+++P D
Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATQWLPNGNDVVEWVRQHSPSLILLDLMLPGCD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +T + KPF R++V V LL
Sbjct: 69 GLTLCRTIRQ-FSNVPIIMVTARIEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRR 127
>gi|50086511|ref|YP_048021.1| positive response regulator for the pho regulon,autophosphorylates
and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
gi|49532487|emb|CAG70199.1| positive response regulator for the pho regulon, autophosphorylates
and phosphorylates sensor PhoR [Acinetobacter sp. ADP1]
Length = 236
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DGIE 63
IL+ +D+ +R + +L AG++ + + A+ + ++ +L+L D ++P G++
Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQMIVDQRPALILLDWMLPGGVSGVD 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR E ++ V+ +T ++KPF R+LV+ + +L
Sbjct: 66 LCRRLKRDENLSEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|116620764|ref|YP_822920.1| two component sigma54-specific Fis family transcriptional regulator
[Candidatus Solibacter usitatus Ellin6076]
gi|116223926|gb|ABJ82635.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Candidatus Solibacter usitatus Ellin6076]
Length = 482
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ D+R L L G Y V +NG K+ + L+L D++MP+M G+
Sbjct: 14 KILVIDDELDIREGLHDLLTLEGGYIVELAHNGGEGLQKLEGASYDLVLLDLMMPDMSGM 73
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ ++ D + + IT + +V D+ SKP+ L+ E++R++ +
Sbjct: 74 DVLQQVRTRDRETPIFMITAYGSVEAAVDALKLGANDYFSKPWDNEKLLIEIDRMIARR 132
>gi|289626740|ref|ZP_06459694.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
str. NCPPB3681]
gi|289648659|ref|ZP_06480002.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
str. 2250]
gi|298487563|ref|ZP_07005605.1| Two-component system response regulator QseB [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|298157947|gb|EFH99025.1| Two-component system response regulator QseB [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
gi|330870522|gb|EGH05231.1| DNA-binding response regulator [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 222
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED + L+ ALG+ GY V +G A + EP+ L++ D+ +P M G+E
Sbjct: 2 RLLLVEDHVPLADELLAALGRQGYAVDWLADGRDAVYQGATEPYDLIVLDLGLPGMPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ V+ +T + + + L+KPFH +L + LL +
Sbjct: 62 VLQQWRGKGLATPVLILTARGSWSERIEGLKSGADDYLTKPFHPEELQLRIQALLRRSH 120
>gi|261252544|ref|ZP_05945117.1| DNA-binding response regulator [Vibrio orientalis CIP 102891]
gi|260935935|gb|EEX91924.1| DNA-binding response regulator [Vibrio orientalis CIP 102891]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+LL ED+ ++ L G E+ +NG E F L+L D+++P MD
Sbjct: 1 MN-KVLLVEDNREVAGILFDYFECEGMELDYADNGELGLQLALEGTFDLILLDLMLPRMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + E + V+ +T L+KPF L L + L+
Sbjct: 60 GLTVCNKLREAGVNTPVLMLTALDNREDMLKGFKHGADDYLTKPFDLEILEARIQALIKR 119
>gi|255007701|ref|ZP_05279827.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis 3_1_12]
Length = 1362
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G +E L+++D++MP DG
Sbjct: 1113 KKTLLIIEDNVDVRQYIRSLFVAK-YTVLEAADGEEGIQVATKEIPDLIISDVMMPVKDG 1171
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1172 FACCREIRERQETAHIPILMLTARAEDADVLQGSRSGADDYMMKPFNPEVLKAKVENLI 1230
>gi|238764462|ref|ZP_04625410.1| Transcriptional regulator in 2-component system [Yersinia
kristensenii ATCC 33638]
gi|238697274|gb|EEP90043.1| Transcriptional regulator in 2-component system [Yersinia
kristensenii ATCC 33638]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV ++G A + + LLL +MP +GI
Sbjct: 2 HKILLVDDDRELTALLKELLEMEGFNVVVAHDGEQALNLLDSSIDLLLLDI-MMPRKNGI 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 61 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 119
>gi|227498372|ref|ZP_03928522.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
gi|226903834|gb|EEH89752.1| two-component system transcriptional regulator [Acidaminococcus sp.
D21]
Length = 274
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I EDD+++R + AL +E + +G S Y + ++ L+L DI++P GIE+
Sbjct: 50 IYCVEDDENIRELVAYALESQQFETQTFADGESFYKVLEKKIPDLVLLDIMLPGESGIEI 109
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ E DL V+ +T + ++KPF + +L++ + +L +
Sbjct: 110 LKKIRHKERTADLPVIMLTARTSEYDVVKGLTIGADDYVTKPFGILELISRIRAVLRRSH 169
>gi|226948065|ref|YP_002803156.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
gi|226842279|gb|ACO84945.1| DNA-binding response regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN+ KIL+ ED++D+ + L L ++ Y S +G A ++E + ++L D+++P
Sbjct: 1 MNKDIKILVVEDNNDINKLLCDMLRQSEYITKSAYSGTEALIYLKEYDWDMVLLDLMLPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG EL + P + V+ I+ + ++ ++KPF + ++ ++ L
Sbjct: 61 MDGKELLSNIRKSKP-MPVIIISAKEEKDIKIETLRMGADDYITKPFDIDEVSARIDSHL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|161617128|ref|YP_001591093.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161366492|gb|ABX70260.1| hypothetical protein SPAB_04968 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|150003574|ref|YP_001298318.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
gi|149931998|gb|ABR38696.1| two-component system sensor histidine kinase/response regulator,
hybrid [Bacteroides vulgatus ATCC 8482]
Length = 1408
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ DMR ++ L + Y V+ + G A ++ + +++D++MP MDG+E
Sbjct: 1155 TILVVEDNKDMRAYIRSILAEY-YNVLEASQGEEALTVLQSQNVDFIVSDLMMPVMDGME 1213
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+RR + + +T + +S + L KPF L+ ++ +L +
Sbjct: 1214 LSRRVKSNFAISHIPFLMLTAKTSNESRIESFRIGVDEYLLKPFDDTLLLARISNILENR 1273
>gi|42781734|ref|NP_978981.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
gi|42737657|gb|AAS41589.1| DNA-binding response regulator [Bacillus cereus ATCC 10987]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ ED++++ FL L GY+V +G + E + L+L D+++P ++GI
Sbjct: 2 QHILIIEDEENLADFLELELKYEGYKVDIQFDGRKGLEAALETNYDLILLDLMLPGLNGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR + ++ +T ++ L KPF + +L+ + + +
Sbjct: 62 EVCRRLRA-TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRRE 119
>gi|13633959|sp|Q9ZHD3|SILR_SALTY RecName: Full=Probable transcriptional regulatory protein silR
gi|4206626|gb|AAD11745.1| putative transcriptional regulator responder SilR [Salmonella
enterica subsp. enterica serovar Typhimurium]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD +L K L +AG+ V +NG + Y + L++ DI++P+++G +
Sbjct: 2 KILIVEDDIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T + L KPF +L+ V LL N
Sbjct: 62 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120
>gi|87303319|ref|ZP_01086112.1| two-component response regulator [Synechococcus sp. WH 5701]
gi|87282214|gb|EAQ74175.1| two-component response regulator [Synechococcus sp. WH 5701]
Length = 400
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L L G +V++ +G++ + R L+L D M MDG+E
Sbjct: 14 TILLIDDDRILQHILSGLLKAQGCQVLTATDGSTGLELARRHRPQLVLCDWSMAGMDGLE 73
Query: 64 LARRATELDPDLKV--MFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + + + +T +++ + LSKP DL+ V L +
Sbjct: 74 VCRRFKQDTHLAPIYFILLTSRSSLVERVEGLDAGADDFLSKPVEPSDLLARVRSGLRL 132
>gi|329120744|ref|ZP_08249406.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
ATCC BAA-1200]
gi|327460541|gb|EGF06877.1| transcriptional regulatory protein OmpR [Neisseria bacilliformis
ATCC BAA-1200]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +DD + L + L G EV S +G + ++ + +++ D +MP+M+
Sbjct: 1 MS-RVLLVDDDAVLTELLTEYLTAEGLEVRSVPDGEAGVHEILSGQYDVVVLDSMMPKMN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ + + ++ +T + KP R+L+ +N +L
Sbjct: 60 GLDVLKTVRTQ-SSIPIIMLTAKGDDIDRIIGLEMGADDYVPKPSTPRELLARINAILRR 118
>gi|291299360|ref|YP_003510638.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290568580|gb|ADD41545.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 22/109 (20%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L G+ V +G A + E ++L D+++P M
Sbjct: 1 MRARVLVVDDDPALAEMLGIVLRTEGFTPVFVTDGEQALEAFHEHRPDVVLLDLMLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
GI++ ++ L+ + ++ +T + + KPF ++
Sbjct: 61 GIDVCKQIR-LESGVPIVMLTAKSDTVDVVLGLESGADDYVIKPFKPKE 108
>gi|260600073|ref|YP_003212811.1| DNA-binding transcriptional activator CusR [Cronobacter turicensis
z3032]
gi|260219420|emb|CBA34772.1| Probable transcriptional regulatory protein silR [Cronobacter
turicensis z3032]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 54/121 (44%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G
Sbjct: 8 KMKILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNG 67
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ R + V+ +T + L KPF +L+ V LL
Sbjct: 68 WDIIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 127
Query: 122 N 122
N
Sbjct: 128 N 128
>gi|241763479|ref|ZP_04761532.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
gi|241367320|gb|EER61651.1| multi-sensor hybrid histidine kinase [Acidovorax delafieldii 2AN]
Length = 1618
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED++ + ++ L AG+ V NG A + + + ++L D+ MP MDG
Sbjct: 1267 VLLVEDNELNQMVAVELLRDAGFAVDVAGNGERALQLLDGKNYDVVLMDMQMPVMDGETA 1326
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR DL V+ +T A A A ++KP L + R + ++
Sbjct: 1327 TRRLRADPRHADLPVIAMTANAMEADRQRCFAAGMNDHVAKPIEPSVLWAALARWIRLR 1385
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-----EEPFSLLLTDIVMP 57
+++L+ +D+ L + L G+ V +G A + +R ++P+ LLL D MP
Sbjct: 1116 RRVLVVDDNHTAATVLSEMLQSMGFHVDQAYSGLEALETLRQATQQQKPYGLLLLDWHMP 1175
Query: 58 EMDGIELARRATELD-PDLK-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
MDG+ELA + ++ ++ +T + + + A VL KP + L + +
Sbjct: 1176 GMDGVELAGHIRSMGLAEIPQMLMVTAYGREDVMRAARAQGIEAVLIKPVNASVLFDTL 1234
>gi|209548520|ref|YP_002280437.1| transcriptional regulator [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534276|gb|ACI54211.1| two component transcriptional regulator, winged helix family
[Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L +AGY V +G + EP+ ++ DI +P++DG+
Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPDLDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|158338166|ref|YP_001519343.1| two-component hybrid histidine kinase sensor and regulator
[Acaryochloris marina MBIC11017]
gi|158308407|gb|ABW30024.1| two-component hybrid histidine kinase sensor and regulator
[Acaryochloris marina MBIC11017]
Length = 355
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+ IL +D D L L AGY + ++G +A ++++ L++ D++MP M G
Sbjct: 8 NRYILAVDDLPDNLMLLKMMLESAGYRIELVDSGPAALAQIQKAQPDLVILDVMMPGMSG 67
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ ++ P + ++ I+ + + KP L +L V LL
Sbjct: 68 YEVTQKIRNDPQLPYIPILLISAH-ERSSVVKGLDAGADDFIRKPVELEELQARVRSLLR 126
Query: 120 IK 121
+K
Sbjct: 127 LK 128
>gi|160882790|ref|ZP_02063793.1| hypothetical protein BACOVA_00751 [Bacteroides ovatus ATCC 8483]
gi|237720696|ref|ZP_04551177.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|260170259|ref|ZP_05756671.1| two-component system response regulator [Bacteroides sp. D2]
gi|293373970|ref|ZP_06620311.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|298484159|ref|ZP_07002325.1| DNA-binding response regulator [Bacteroides sp. D22]
gi|299145588|ref|ZP_07038656.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
gi|315918622|ref|ZP_07914862.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|156111814|gb|EDO13559.1| hypothetical protein BACOVA_00751 [Bacteroides ovatus ATCC 8483]
gi|229449531|gb|EEO55322.1| two-component system response regulator [Bacteroides sp. 2_2_4]
gi|292631046|gb|EFF49683.1| response regulator receiver domain protein [Bacteroides ovatus SD
CMC 3f]
gi|298269663|gb|EFI11258.1| DNA-binding response regulator [Bacteroides sp. D22]
gi|298516079|gb|EFI39960.1| DNA-binding response regulator [Bacteroides sp. 3_1_23]
gi|313692497|gb|EFS29332.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + +L K Y V + ++ SA K+ + + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLRELIQCSLEKERYVVETASDFNSALRKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ I+ ++ L KPFHL +L + ++
Sbjct: 62 LLERLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLVELNARIKSVIRR 118
>gi|126738480|ref|ZP_01754185.1| response regulator [Roseobacter sp. SK209-2-6]
gi|126720279|gb|EBA16985.1| response regulator [Roseobacter sp. SK209-2-6]
Length = 423
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D RR L+ +L K G+EV+ ++G +A + +E L+L+D +MP M GIE
Sbjct: 20 RVLVVDDSRLQRRILVASLKKWGFEVIEADSGEAAMEICLQESPDLILSDWMMPGMSGIE 79
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRLL 118
+ + D + +T + + L+KP +L + R+L
Sbjct: 80 FCQAFRQRSKDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERIL 139
Query: 119 TIK 121
++
Sbjct: 140 RMQ 142
>gi|221067068|ref|ZP_03543173.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
gi|220712091|gb|EED67459.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L + L +AGY NG+ + +SL++ D+++P ++G +
Sbjct: 2 RVLIVEDEPKTGEYLRQGLTEAGYIADLVPNGSDGLHMALQGEYSLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQALRDRGLHMPVLFLTARDHVEDRVKGLELGADDYLVKPFSFAELLARVRIILRR 118
>gi|113972144|ref|YP_735937.1| two component transcriptional regulator [Shewanella sp. MR-4]
gi|113886828|gb|ABI40880.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-4]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L + L A Y + ++G + E + + D+ +P++DGI
Sbjct: 2 RLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E + ++ +T + + L+KPFH +LV + L+
Sbjct: 62 LIRRVREKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>gi|89893285|ref|YP_516772.1| hypothetical protein DSY0539 [Desulfitobacterium hafniense Y51]
gi|89332733|dbj|BAE82328.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 1022
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ R L L Y+V + +G A + ++ E F LLLTD++MP M GI
Sbjct: 694 KKILIVDDEPTNIRVLSLMLEGE-YQVSAAYSGEKALESLKNEKFHLLLTDLMMPGMSGI 752
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + +L ++ T + ++KPF ++ V LL +
Sbjct: 753 ELTQQIRQNYSLIELPIIIATARNREREIELAYQNGANDYITKPFTAEEVQWRVRSLLKL 812
>gi|1705849|sp|Q07783|CHVI_RHIRD RecName: Full=Transcriptional regulatory protein ChvI
gi|304125|gb|AAA03553.1| putative [Agrobacterium tumefaciens]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I L +DD ++ + AL + GY V + +GASA D + P L + DI MP MDG+
Sbjct: 2 QTIALVDDDRNILTSVSIALEREGYRVETYTDGASAVDGLIARPPQLAIFDIKMPRMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + D+ V+F+T ++KPF R LV V +L
Sbjct: 62 ELLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118
>gi|290352167|dbj|BAI78794.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEM
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMY 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRGADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|289643275|ref|ZP_06475400.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
gi|289506915|gb|EFD27889.1| two component transcriptional regulator, winged helix family
[Frankia symbiont of Datisca glomerata]
Length = 253
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 59/117 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ ++ + +L G++VV+ G A V E L++ D+++ ++DG E
Sbjct: 13 RVLVVDDEANITDLVRMSLRFHGFDVVTATCGQEAVAAVAEAKPDLMVLDVLLSDIDGFE 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR ++ D+ V+F+T A ++KPF + +LV V +L
Sbjct: 73 VCRRLRDVGTDVPVIFLTARDRHADKIAGLTCGGDDYVTKPFSVDELVARVRAVLRR 129
>gi|260435869|ref|ZP_05789839.1| two component transcriptional regulator, LuxR family [Synechococcus
sp. WH 8109]
gi|260413743|gb|EEX07039.1| two component transcriptional regulator, LuxR family [Synechococcus
sp. WH 8109]
Length = 245
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
+D+ +R + L G+EV + +G + K ++ ++++D++MP +DG L ++
Sbjct: 24 VDDEPGLRTAVQAYLEDEGFEVTTAVDGEEGFAKAQQMLPDVVISDVMMPRLDGYGLLQK 83
Query: 68 ATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ V+F+T A + KPF +LV V + +
Sbjct: 84 LRADERLGGTPVIFLTAKGMTADRTQGYLAGVDDYIPKPFDPDELVARVRNVAQRQ 139
>gi|228989703|ref|ZP_04149685.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228770037|gb|EEM18619.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + + L +EV + NG + + ++L D+++P +DG E
Sbjct: 2 RLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+F+T ++ L KPF +L + LL
Sbjct: 61 VIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRR 117
>gi|242280792|ref|YP_002992921.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
gi|242123686|gb|ACS81382.1| PAS/PAC sensor hybrid histidine kinase [Desulfovibrio salexigens
DSM 2638]
Length = 719
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
+ILLAED+ + ++ L + G+EV + NG A D + PF ++L D+ MPEMDG+
Sbjct: 599 RILLAEDNATNQLYIAHFLTEQGFEVETAENGLEALDLLDNSGPFDVILMDVQMPEMDGL 658
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E ++ E ++ ++ +T +A + SKP ++ +LV + +L
Sbjct: 659 EATKKIREQGNEIPIIALTAYAMEGDREKFLSNGMDAYSSKPVNIDELVQIIGKL 713
>gi|15843385|ref|NP_338422.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|148824970|ref|YP_001289724.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|253800812|ref|YP_003033813.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 1435]
gi|254233257|ref|ZP_04926583.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
gi|289747605|ref|ZP_06506983.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis 02_1987]
gi|13883750|gb|AAK48236.1| DNA-binding response regulator [Mycobacterium tuberculosis CDC1551]
gi|124603050|gb|EAY61325.1| hypothetical protein TBCG_03690 [Mycobacterium tuberculosis C]
gi|148723497|gb|ABR08122.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis F11]
gi|253322315|gb|ACT26918.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 1435]
gi|289688133|gb|EFD55621.1| two component transcriptional regulatory protein [Mycobacterium
tuberculosis 02_1987]
gi|328460539|gb|AEB05962.1| two component system transcriptional regulator [Mycobacterium
tuberculosis KZN 4207]
Length = 286
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 54/108 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + + AL G+ + + +G+SA R + +++ D+++P+M G++
Sbjct: 62 TVLVVDDEPVLAEMVSMALRYEGWNITTAGDGSSAIAAARRQRPDVVVLDVMLPDMSGLD 121
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLV 111
+ + +P L V+ +T AV ++KPF + ++V
Sbjct: 122 VLHKLRSENPGLPVLLLTAKDAVEDRIAGLTAGGDDYVTKPFSIEEVV 169
>gi|121602622|ref|YP_989267.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
gi|120614799|gb|ABM45400.1| DNA-binding response regulator [Bartonella bacilliformis KC583]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L K G+ V N A + F LL+ D++MP +GI+
Sbjct: 14 HLLVIDDDTRIRSLLSQFLIKNGFRVSVSANADEARRLLTSLDFDLLIVDVMMPGENGID 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ ++ +T + + L+KPF R+L+ VN +L
Sbjct: 74 LTHSLRQ-TKNVPILMLTALSEIDHRIHGLEAGADDYLAKPFDPRELLLRVNAILRR 129
>gi|325521874|gb|EGD00591.1| two component transcriptional regulator [Burkholderia sp. TJI49]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + AL A Y V G SA + + + L++ D+ +P DG++
Sbjct: 2 RVLLIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T A+ + KPF + +L+ + +L KN
Sbjct: 62 VLTSIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKN 120
>gi|325578292|ref|ZP_08148427.1| two component response regulator [Haemophilus parainfluenzae ATCC
33392]
gi|325160028|gb|EGC72157.1| two component response regulator [Haemophilus parainfluenzae ATCC
33392]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L L K+G+ V +G S + + P+ ++ D+ +P++DG+E
Sbjct: 20 RVLLVEDDPLIGNGLQIGLTKSGFIVDWFTDGQSGLNALIGAPYDAVVLDLTLPKLDGLE 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ + D+ V+ +T + L KPF L ++V + L+ +
Sbjct: 80 VLKQWRSNNQDVPVLILTARDTLDERIKGIQQGADDYLCKPFALAEVVVRLQALIRRR 137
>gi|300790732|ref|YP_003771023.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299800246|gb|ADJ50621.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 249
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 52/107 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + AL G+EV S +G A RE ++ D+++P+ G+E
Sbjct: 25 RVLVVDDEATLAELVSMALRMEGWEVRSAGDGTEAVRIAREFRPDAVVLDVMLPDFSGLE 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ RR P L V+F+T AV ++KPF L ++
Sbjct: 85 VLRRMRSEAPQLPVLFLTAKDAVEDRIAGLTAGGDDYVTKPFSLEEV 131
>gi|295837253|ref|ZP_06824186.1| DNA-binding response regulator [Streptomyces sp. SPB74]
gi|295826427|gb|EFG64844.1| DNA-binding response regulator [Streptomyces sp. SPB74]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDDD +R AL + G+ V + +G + R + L D+++P MDG+
Sbjct: 12 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRVAAPDIALLDVMVPGMDGVS 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF + LV + ++
Sbjct: 72 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 127
>gi|238854218|ref|ZP_04644563.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
202-4]
gi|238833154|gb|EEQ25446.1| DNA-binding response regulator, OmpR family [Lactobacillus gasseri
202-4]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED++ + R L+ A+ Y+V + NG A + ++ + +++ DI+MP MDGI
Sbjct: 2 KILLAEDEEQLSRVLVAAMQSVNYDVDAVFNGRDAVELAKKNSYDVIILDIMMPIMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
++ + V+ +T A + L+KPF L++L+ +
Sbjct: 62 ALKQIRKSGDKTYVLMLTAKAEIDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|311739338|ref|ZP_07713174.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
gi|311305636|gb|EFQ81703.1| response regulator [Corynebacterium pseudogenitalium ATCC 33035]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
I++ +DD + L GYEV S + GA V + +++ D+ +P+MDG
Sbjct: 5 KATIVIVDDDPRLLTTLSINFKARGYEVYSASTGAEGLQVVSQHQPDVVILDMGLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + V+ +T + + + ++KPF + +L+ V L
Sbjct: 65 REVLDGIRG-WSAIPVLILTARSDPLFSASALDRGADDYVTKPFSMEELLARVRVALR 121
>gi|54026938|ref|YP_121180.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
gi|54018446|dbj|BAD59816.1| putative two-component system response regulator [Nocardia
farcinica IFM 10152]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V +G A +K + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYTVDLAVDGVDALEKATAQRPDALVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ RR DL ++ +T +V+ L KPF
Sbjct: 62 VCRRLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPF 103
>gi|117928403|ref|YP_872954.1| two component transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117648866|gb|ABK52968.1| two component transcriptional regulator, winged helix family
[Acidothermus cellulolyticus 11B]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + R L L GYEV + +G +A V L++ D+ +P+MDGI++
Sbjct: 4 VLVVDDEPAIVRALRINLTARGYEVYTAFDGRTALQLVTAHKPDLMILDLGLPDMDGIDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ A + ++KPF + +L+ + +
Sbjct: 64 IGGVRG-WSTMPILVLSARDQEAQKVKALDAGADDYVTKPFGMDELLARLRASIRR 118
>gi|53718811|ref|YP_107797.1| two-component system, regulatory protein KdpE [Burkholderia
pseudomallei K96243]
gi|76811337|ref|YP_332807.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
1710b]
gi|167718797|ref|ZP_02402033.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei DM98]
gi|167814991|ref|ZP_02446671.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 91]
gi|167823404|ref|ZP_02454875.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 9]
gi|167844953|ref|ZP_02470461.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei B7210]
gi|167893496|ref|ZP_02480898.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 7894]
gi|167901949|ref|ZP_02489154.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei NCTC 13177]
gi|167910181|ref|ZP_02497272.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 112]
gi|167918213|ref|ZP_02505304.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei BCC215]
gi|254175503|ref|ZP_04882163.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
10399]
gi|254207477|ref|ZP_04913827.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
gi|284159939|ref|YP_001058295.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 668]
gi|288553010|ref|ZP_03450883.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 576]
gi|52209225|emb|CAH35170.1| two-component system, regulatory protein KdpE [Burkholderia
pseudomallei K96243]
gi|76580790|gb|ABA50265.1| DNA-binding response regulator KdpE [Burkholderia pseudomallei
1710b]
gi|147751371|gb|EDK58438.1| DNA-binding response regulator KdpE [Burkholderia mallei JHU]
gi|160696547|gb|EDP86517.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
10399]
gi|283775091|gb|ABN83417.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 668]
gi|288279717|gb|EEC36697.2| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 576]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 1 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 61 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 119
Query: 118 LTIKN 122
L +N
Sbjct: 120 LRRRN 124
>gi|300822262|ref|ZP_07102403.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
gi|300525145|gb|EFK46214.1| transcriptional activator protein Irlr [Escherichia coli MS 119-7]
gi|323936954|gb|EGB33235.1| heavy metal response regulator [Escherichia coli E1520]
Length = 260
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|291561962|emb|CBL40771.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++ I + +D+ ++R + L G+ V + +G A + +L+ DI+MP +D
Sbjct: 1 MSKLIYVVDDESNIRTMMQLFLENEGFTVETFKDGQEACQAFSAKEPDMLILDIMMPGID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L + ++F++ + ++KPF + V V L
Sbjct: 61 GLSLCTYFRRQ-SHVPIIFVSAKDTPLDRVMGITLGSDDYITKPFLPLEFVARVKALFRR 119
Query: 121 KN 122
+
Sbjct: 120 SD 121
>gi|290352199|dbj|BAI78810.1| putative two-component response regulator [Streptococcus pyogenes]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ ED+ ++ RF+ L GYEV+ NG + E+ F L+L D+++PEMD
Sbjct: 1 MTKKILIIEDEKNLARFVSLELQHEGYEVIVEVNGREGLETALEKEFDLILLDLMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ RR + + +M +T ++ + KPF + +L+ + +
Sbjct: 61 GFEVTRRL-QTEKTTYIMMMTARDSIMDVVAGLDRSADDYIVKPFAIEELLARIRAIFRR 119
Query: 121 KN 122
++
Sbjct: 120 QD 121
>gi|238759870|ref|ZP_04621026.1| Nitrogen regulation protein NR(I) [Yersinia aldovae ATCC 35236]
gi|238701931|gb|EEP94492.1| Nitrogen regulation protein NR(I) [Yersinia aldovae ATCC 35236]
Length = 470
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCTTFESGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|239627972|ref|ZP_04671003.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47_FAA]
gi|239518118|gb|EEQ57984.1| two component transcriptional regulator [Clostridiales bacterium
1_7_47FAA]
Length = 219
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + + L +GY+ + +G +A + EE F L+L DI++P DG +
Sbjct: 3 RILIVDDEKPICDLIDMNLSASGYQCAAVQDGIAALKMIEEEAFDLILLDIMLPGADGYD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ L + V+FIT V L KPF + +L V +L N
Sbjct: 63 IMEYIRPLG--IPVIFITAKHEVKDRVKGLRLGADDYLVKPFDVVELTARVEAVLRRYN 119
>gi|182437916|ref|YP_001825635.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326778552|ref|ZP_08237817.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
gi|178466432|dbj|BAG20952.1| putative two-component system response regulator [Streptomyces
griseus subsp. griseus NBRC 13350]
gi|326658885|gb|EGE43731.1| two component transcriptional regulator, winged helix family
[Streptomyces cf. griseus XylebKG-1]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G S + R + + L D+++P +
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERVGFTVTAMPDGLSGLEAFRADRPDIALLDVMVPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|15598273|ref|NP_251767.1| two-component response regulator [Pseudomonas aeruginosa PAO1]
gi|107102626|ref|ZP_01366544.1| hypothetical protein PaerPA_01003690 [Pseudomonas aeruginosa PACS2]
gi|116051074|ref|YP_790096.1| putative two-component response regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218890723|ref|YP_002439587.1| putative two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|254236049|ref|ZP_04929372.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719]
gi|254241777|ref|ZP_04935099.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192]
gi|296388425|ref|ZP_06877900.1| putative two-component response regulator [Pseudomonas aeruginosa
PAb1]
gi|313108385|ref|ZP_07794401.1| putative two-component system regulatory protein [Pseudomonas
aeruginosa 39016]
gi|9949184|gb|AAG06465.1|AE004731_13 probable two-component response regulator [Pseudomonas aeruginosa
PAO1]
gi|115586295|gb|ABJ12310.1| putative two-component system regulatory protein [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126167980|gb|EAZ53491.1| hypothetical protein PACG_02006 [Pseudomonas aeruginosa C3719]
gi|126195155|gb|EAZ59218.1| hypothetical protein PA2G_02488 [Pseudomonas aeruginosa 2192]
gi|218770946|emb|CAW26711.1| probable two-component response regulator [Pseudomonas aeruginosa
LESB58]
gi|310880903|gb|EFQ39497.1| putative two-component system regulatory protein [Pseudomonas
aeruginosa 39016]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED+ D+ +I L AG +G + + R + ++L DI++P ++
Sbjct: 1 MHIHVLVVEDNFDLAGTVIDYLEAAGVVCDHARDGQAGLNLARANRYDVILLDIMLPRIN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E V+ +T + D L KPF L +L+ + L
Sbjct: 61 GRQVCRQLREAGLQTPVLMLTALDTLQDKLDGFDAGADDYLLKPFELPELLVRLQALSRR 120
Query: 121 KN 122
++
Sbjct: 121 RS 122
>gi|329963487|ref|ZP_08301016.1| putative transcriptional regulatory protein RprY [Bacteroides
fluxus YIT 12057]
gi|328528658|gb|EGF55622.1| putative transcriptional regulatory protein RprY [Bacteroides
fluxus YIT 12057]
Length = 239
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ + + L + + + ++G + +L+TD++MP MDG E+
Sbjct: 6 VLLVEDEQTLSMIIKDTLEGQNFTIHTASDGEEGLRSFFDLRPDVLVTDVMMPRMDGFEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR + D V+F+T +A + L KPF +++L+ + L
Sbjct: 66 VRRIRQTDKRTPVLFLTARSATHDVVEGFELGANDYLKKPFGMQELIIRIKAL 118
>gi|330808333|ref|YP_004352795.1| two-component response regulator [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376441|gb|AEA67791.1| two-component response regulator [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQTATLLVIDDEPQIRKFLRISLSSQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R + + V+ ++ A+ A ++ ++KPF +++ + V LL
Sbjct: 61 MDGQQVLREFRQ-WSTVPVLVLSVRASEAQKVEALDNGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|326802679|ref|YP_004320497.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
gi|326650499|gb|AEA00682.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Aerococcus urinae ACS-120-V-Col10a]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
K+L+ +DD ++ L GY+V+ +G A ++ E P +L++ DI+MP DG+
Sbjct: 2 KLLIVDDDKEIVELLTIYSSNEGYDVIQAYDGDEALKRISENPDIALIILDIMMPGKDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D+ ++ ++ +A ++KPF+ +++ V LL
Sbjct: 62 TVVKELRSREVDVPILLLSAKSADMDKISGLTTGADDYVTKPFNPLEVMARVKSLLRR 119
>gi|320526762|ref|ZP_08027952.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
gi|320132730|gb|EFW25270.1| response regulator receiver domain protein [Solobacterium moorei
F0204]
Length = 226
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K L GYEV C +G +A++ +E + L++ D+ +P MDG+E
Sbjct: 2 RLLVVEDEITLCETIAKGLRLDGYEVDICYDGGTAWNMAMDESYDLIILDLNLPVMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + D + V+ ++ + D L KPFH +L V L +
Sbjct: 62 VLHNIRKEDSETAVLILSARGHLQDKIDGLDSGANDYLCKPFHFEELEARVRSLTRRR 119
>gi|302334934|ref|YP_003800141.1| response regulator receiver protein [Olsenella uli DSM 7084]
gi|301318774|gb|ADK67261.1| response regulator receiver protein [Olsenella uli DSM 7084]
Length = 303
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + + L Y VVS +G SA D + E L++ D+++P ++G
Sbjct: 2 KKILVVEDDPASLTLITEILKGYDYTVVSALDGRSALDVSKRENPDLIILDVMLPALNGY 61
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + ++ +T + + LSKPF +L+ + LL+
Sbjct: 62 QVCERLRSMSQFRNTPIIMLTVLNEDSQRIRALEAGANGFLSKPFKRVELLTRIKALLSA 121
Query: 121 K 121
+
Sbjct: 122 Q 122
>gi|291005149|ref|ZP_06563122.1| two-component system response regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD +R AL + GY+V + +G + +++ + + + + D+++P +DGIE
Sbjct: 6 RLLLVEDDAVLREATQLALERYGYDVRTAVDGLAGWEEFQADAPQVAVLDVMLPNLDGIE 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + V+ ++ + KPF LV + ++
Sbjct: 66 LCRRIRG-CSHVPVLMLSARTDPLDVVQGLEAGADDYVVKPFDTSVLVARIRSVVRR 121
>gi|262201364|ref|YP_003272572.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262084711|gb|ACY20679.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V + +G A +K+ + + + D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLTFNGYAVDTAGDGIEALEKIVSDRPDVAIMDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ RR DL ++ +T V+ L KPF
Sbjct: 62 VCRRLRSAGDDLPILVLTARDTVSERVSGLDAGADDYLPKPF 103
>gi|218513473|ref|ZP_03510313.1| two-component response regulator protein [Rhizobium etli 8C-3]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-D 60
+ +L+ +DD +R+ L + GY V S +G ++R++ F +L D+V+P D
Sbjct: 7 DAHLLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPGGTD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++LAR D+ +M +TG V ++KPFHLR++ + +L
Sbjct: 67 GLDLAREIRAQ-SDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRR 125
Query: 121 K 121
+
Sbjct: 126 R 126
>gi|220908072|ref|YP_002483383.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7425]
gi|219864683|gb|ACL45022.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 7425]
Length = 392
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++R L K L + GY+V ++G + + V+ L++ D +M MDG+E+
Sbjct: 11 ILLIDDDRILQRILQKTLQEQGYDVSLASSGEAGLELVKHTHPQLIICDWLMEGMDGLEV 70
Query: 65 ARRATELDPDL--K-VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R DPDL + +T +AV LSKP +L+ V L +
Sbjct: 71 CQRIK-TDPDLDHPFFILLTSRSAVEDRVQGLNTGADDFLSKPIDPSELIARVRAGLRL 128
>gi|218438697|ref|YP_002377026.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
gi|218171425|gb|ACK70158.1| multi-component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7424]
Length = 597
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD + + + L Y V +G + +SL+L D+++P +DG+
Sbjct: 2 KILLIEDDPFISQLISTKLIANRYTVDLVTDGELGLEFALMGKYSLILLDVIIPILDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + + ++ +T + ++KPF + L+ + L+ ++
Sbjct: 62 LCHQLRDSGCETPIIMLTAKNSDEDVITGLDAGADDYVTKPFDVEQLLARIRALIRRQD 120
Score = 104 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 47/121 (38%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+++ +DD + L+ L +V + + + + +LL D+ MP +G
Sbjct: 475 NSKVMIVDDDPIFLKTLMALLQPWELQVTTLSKSDRFWQVLTTTNPDVLLLDLEMPTFNG 534
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL R + L ++ +T A +SKP +++ V +
Sbjct: 535 LELCRVVRQDSKYNHLPIVVVTAHTDDNSIQQVFAAGADDFISKPITDSEVLARVINQIE 594
Query: 120 I 120
Sbjct: 595 R 595
Score = 42.0 bits (99), Expect = 0.026, Method: Composition-based stats.
Identities = 6/83 (7%), Positives = 30/83 (36%), Gaps = 2/83 (2%)
Query: 39 YDKVREEPFSLLLTDIV--MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPK 96
+ +++ +++ + + + G+ L ++ + P + V+ T +
Sbjct: 387 WQWLKQNTPDVIMLSLHRSLTQDSGLMLLQQLKKQFPSIPVLVTTEKDNLYERVAVVRSG 446
Query: 97 NAKVLSKPFHLRDLVNEVNRLLT 119
+ + ++ + +L+
Sbjct: 447 GEGYILQTATTEEVFGAITEVLS 469
>gi|330837299|ref|YP_004411940.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Spirochaeta coccoides DSM 17374]
gi|329749202|gb|AEC02558.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Spirochaeta coccoides DSM 17374]
Length = 457
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R + + L G E NG SA ++E P+ L D+ MP MDG++
Sbjct: 2 KILIVDDETNIRELMRRYLKLEGIESDGAENGLSAQRLIQETPYDACLLDVRMPGMDGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + V+ I+ V + + KPF +L + +L+ +
Sbjct: 62 LLGWMRQEGYRFPVIMISAHGDVRDAVTALKTGAQDYILKPFDPDELSLRLKKLVEAQ 119
>gi|302521034|ref|ZP_07273376.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
gi|302429929|gb|EFL01745.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sp. SPB78]
Length = 264
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L EDDD +R AL + G+ V + +G + R + L D+++P MDG+
Sbjct: 38 RVLFVEDDDVIREATQLALERVGFRVTAVPDGLQGLESFRAGAPDIALLDVMVPGMDGVS 97
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF + LV + ++
Sbjct: 98 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDVSVLVARLRAVMRR 153
>gi|298383847|ref|ZP_06993408.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
gi|298263451|gb|EFI06314.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. 1_1_14]
Length = 1433
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
+K+L+ EDD+D+R FL + G +EV +G S ++K R L++ D++MP M
Sbjct: 1171 KRKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGM 1227
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ ++ + ++ +T + + + ++KPF ++ L+ V RL
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287
Query: 118 LTIKN 122
+ ++
Sbjct: 1288 IEQRD 1292
>gi|291618228|ref|YP_003520970.1| TctD [Pantoea ananatis LMG 20103]
gi|291153258|gb|ADD77842.1| TctD [Pantoea ananatis LMG 20103]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED ++ R+L KAL + G+ V +G + ++ E ++L++ D+ +P +DGIE
Sbjct: 7 RLLLVEDTAELARWLQKALTQKGFAVDWVADGLAVDHSLQSEDYALVVLDVSLPRLDGIE 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + L+KPF L +L + LL
Sbjct: 67 VLTRLRRRGQTVPVLMLTARTTLDDRVRGLNTGADDYLTKPFELDELDARLRALLRR 123
>gi|269836215|ref|YP_003318443.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
gi|269785478|gb|ACZ37621.1| two component transcriptional regulator, winged helix family
[Sphaerobacter thermophilus DSM 20745]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D++D+ + L GY V++ +G +A + EP +L D++MP G +
Sbjct: 6 TVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGYD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR E + D+ V+F+T + K ++V + +L
Sbjct: 66 VLRRIRE-NRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRR 121
>gi|260682102|ref|YP_003213387.1| two-component response regulator [Clostridium difficile CD196]
gi|260685700|ref|YP_003216833.1| two-component response regulator [Clostridium difficile R20291]
gi|260208265|emb|CBA60671.1| two-component response regulator [Clostridium difficile CD196]
gi|260211716|emb|CBE02025.1| two-component response regulator [Clostridium difficile R20291]
Length = 244
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
MN +L+ +DD ++ + K + + ++ + GA + + SL++ DI+MP+
Sbjct: 12 MNS-VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLLDKNRHTLSLVILDIMMPD 70
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG ++ ++ E ++ V+ +T L+KPF + +L+ VN L+
Sbjct: 71 IDGFQVLKKIRE-TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLI 129
Query: 119 TI 120
Sbjct: 130 RR 131
>gi|253570047|ref|ZP_04847456.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251840428|gb|EES68510.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1433
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
+K+L+ EDD+D+R FL + G +EV +G S ++K R L++ D++MP M
Sbjct: 1171 KRKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGM 1227
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ ++ + ++ +T + + + ++KPF ++ L+ V RL
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287
Query: 118 LTIKN 122
+ ++
Sbjct: 1288 IEQRD 1292
>gi|218246672|ref|YP_002372043.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 8801]
gi|218167150|gb|ACK65887.1| response regulator receiver modulated serine phosphatase
[Cyanothece sp. PCC 8801]
Length = 379
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ +DD + L + L ++GYEV+ NNG K +E L++ D VMP ++
Sbjct: 1 MAQ-ILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLN 59
Query: 61 GIELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ + P+L + +T +V L KP + +L+ V
Sbjct: 60 GLEVCSQVK-TFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIEMNELIARVRSG 118
Query: 118 LTI 120
L +
Sbjct: 119 LRL 121
>gi|220920847|ref|YP_002496148.1| winged helix family two component transcriptional regulator
[Methylobacterium nodulans ORS 2060]
gi|219945453|gb|ACL55845.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 246
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 3/123 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ +L+ +DD ++R + L K G V +G + + +++ DI++P
Sbjct: 1 MDHVDHVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPG 60
Query: 59 MDGIELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R ++ +T + L KPF R+L+ + +
Sbjct: 61 DDGLVLCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|107026084|ref|YP_623595.1| two component LuxR family transcriptional regulator [Burkholderia
cenocepacia AU 1054]
gi|116692732|ref|YP_838265.1| two component LuxR family transcriptional regulator [Burkholderia
cenocepacia HI2424]
gi|105895458|gb|ABF78622.1| two component transcriptional regulator, LuxR family [Burkholderia
cenocepacia AU 1054]
gi|116650732|gb|ABK11372.1| two component transcriptional regulator, LuxR family [Burkholderia
cenocepacia HI2424]
Length = 312
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + FL L GY V+ +G A ++ ++L D +MP+MDG E
Sbjct: 2 ILIVDDTPENLAFLSDTLQAHGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 61
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+F+T ++KP +L + +
Sbjct: 62 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRR 119
>gi|86361259|ref|YP_473146.1| two-component response regulator protein [Rhizobium etli CFN 42]
gi|86285361|gb|ABC94419.1| probable two-component response regulator protein [Rhizobium etli
CFN 42]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-D 60
+ +L+ +DD +R+ L + GY V S +G ++R++ F +L D+V+P D
Sbjct: 7 DAHLLVVDDDPRIRQMLTRYFEDEGYTVSSAADGTEMRVRLRQQNFDAVLLDLVLPGGTD 66
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++LAR D+ +M +TG V ++KPFHLR++ + +L
Sbjct: 67 GLDLAREIRAQ-SDVPIMMLTGRDDVVDRIVGLEVGADDYIAKPFHLREVHARLKSILRR 125
Query: 121 K 121
+
Sbjct: 126 R 126
>gi|29349586|ref|NP_813089.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29341496|gb|AAO79283.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1433
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
+K+L+ EDD+D+R FL + G +EV +G S ++K R L++ D++MP M
Sbjct: 1171 KRKVLIIEDDNDIREFLK---EEVGVYFEVEVAADGTSGFEKARTYDADLIICDVLMPGM 1227
Query: 60 DGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ ++ + ++ +T + + + ++KPF ++ L+ V RL
Sbjct: 1228 TGFEVTKKLKSDFATSHIPIILLTALNSPEKHLEGIEAGADAYIAKPFSIKLLLARVFRL 1287
Query: 118 LTIKN 122
+ ++
Sbjct: 1288 IEQRD 1292
>gi|16767270|ref|NP_462885.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167551516|ref|ZP_02345271.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|167995111|ref|ZP_02576201.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|198243758|ref|YP_002217926.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205354412|ref|YP_002228213.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207859197|ref|YP_002245848.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|238913945|ref|ZP_04657782.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|20141558|sp|P41789|NTRC_SALTY RecName: Full=Nitrogen regulation protein NR(I)
gi|16422567|gb|AAL22844.1| EBP family response regulator in two-component regulatory system
with GlnL [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|197938274|gb|ACH75607.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|205274193|emb|CAR39210.1| Two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205323707|gb|EDZ11546.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205327143|gb|EDZ13907.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|206711000|emb|CAR35368.1| Two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261249121|emb|CBG26982.1| two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267996289|gb|ACY91174.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|312915118|dbj|BAJ39092.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321225289|gb|EFX50347.1| Nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|326625716|gb|EGE32061.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629543|gb|EGE35886.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332990833|gb|AEF09816.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|313682761|ref|YP_004060499.1| response regulator receiver modulated diguanylate cyclase
[Sulfuricurvum kujiense DSM 16994]
gi|313155621|gb|ADR34299.1| response regulator receiver modulated diguanylate cyclase
[Sulfuricurvum kujiense DSM 16994]
Length = 428
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 4/121 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
QKIL+ +D+ + + L Y+++ NG A V +P L+L DI+MP M+G
Sbjct: 7 QKILIVDDEPLNISIVAEILNHE-YDLLVATNGEKALQIVSLDPKPDLILLDIMMPGMNG 65
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+A+R E+ + ++F+T +SKPF +L+ + L
Sbjct: 66 FEVAKRLKEIPETFQIPIIFLTAKHDSESIIKGFEAGAVDFVSKPFQKEELLARIKNTLQ 125
Query: 120 I 120
+
Sbjct: 126 M 126
>gi|238760430|ref|ZP_04621568.1| Transcriptional regulator in 2-component system [Yersinia aldovae
ATCC 35236]
gi|238701325|gb|EEP93904.1| Transcriptional regulator in 2-component system [Yersinia aldovae
ATCC 35236]
Length = 264
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL +DD ++ L + L G+ VV +G A + + LLL +MP +GI
Sbjct: 34 HKILLVDDDRELTSLLKELLEMEGFNVVVAYDGEQALNLLDSSIDLLLLDI-MMPRKNGI 92
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E + + V+ +T + L+KPF+ R+LV + +L N
Sbjct: 93 ETLKELRQHH-QTPVIMLTARGSELDRVLGLELGADDYLAKPFNDRELVARIRAILRRSN 151
>gi|145635435|ref|ZP_01791136.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
gi|260582810|ref|ZP_05850596.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae NT127]
gi|145267309|gb|EDK07312.1| transcriptional regulatory protein [Haemophilus influenzae PittAA]
gi|260094136|gb|EEW78038.1| phosphate regulon transcriptional regulatory protein PhoB
[Haemophilus influenzae NT127]
gi|301170463|emb|CBW30070.1| DNA-binding response regulator in two-component regulatory system
with QseC [Haemophilus influenzae 10810]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L L K G+ V +G + + P+ ++ D+ +P++DG+E
Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+ +T + L KPF L ++ + L+ +
Sbjct: 62 VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
>gi|114049392|ref|YP_739942.1| two component transcriptional regulator [Shewanella sp. MR-7]
gi|113890834|gb|ABI44885.1| two component transcriptional regulator, winged helix family
[Shewanella sp. MR-7]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD ++ L + L A Y + ++G + E + + D+ +P++DGI
Sbjct: 2 RLLLVEDDLALQANLKQHLLDAHYSIDVASDGEEGLYQAIEYNYDAAIIDVGLPKLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + ++ +T + + L+KPFH +LV + L+
Sbjct: 62 LIRRVRQKERAFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELVARLKALIRR 118
>gi|148547255|ref|YP_001267357.1| two component transcriptional regulator [Pseudomonas putida F1]
gi|148511313|gb|ABQ78173.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida F1]
Length = 238
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R L L + GY+V + A + + L+L DI +P D
Sbjct: 1 MTPRVLIVDDDPLIRDLLQAYLSQEGYDVHCADTAERAEALLASQDVDLVLLDIRLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +TG + KP + R+LV+ L+
Sbjct: 61 GLTLTRELR-VRSEVGIILVTGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRR 119
>gi|47569605|ref|ZP_00240282.1| DNA-binding response regulator [Bacillus cereus G9241]
gi|47553720|gb|EAL12094.1| DNA-binding response regulator [Bacillus cereus G9241]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ ED++ + FL L GY+V +G + E + L+L D+++P ++G+
Sbjct: 2 QHILIIEDEESLADFLELELKYEGYKVDIQFDGRKGLEVALETNYDLILLDLMLPGLNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ RR + ++ +T ++ L KPF + +L+ + + +
Sbjct: 62 EVCRRLRA-TKNTPIIMLTARDSIMDRVTGLDSGADDYLPKPFAIEELLARMRVIFRRE 119
>gi|313898822|ref|ZP_07832356.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312956404|gb|EFR38038.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ EDD + L YEV C +G S + +E F+L+L D+++P+ DG
Sbjct: 2 KRILIVEDDRAIAELERDYLEANDYEVEICEDGESGLKRALQEDFALILLDVMLPKEDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ R ++ ++ ++ + KPF+ +L+ V +
Sbjct: 62 QVCRNLRA-SKNVPIILVSAKREDMDKIRGLGLGANDYIVKPFNPSELIARVKSQI 116
>gi|293410323|ref|ZP_06653899.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
gi|291470791|gb|EFF13275.1| hypothetical protein ECEG_01281 [Escherichia coli B354]
Length = 260
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|225408012|ref|ZP_03761201.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
DSM 15981]
gi|225042445|gb|EEG52691.1| hypothetical protein CLOSTASPAR_05233 [Clostridium asparagiforme
DSM 15981]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ +ILL +D+ D+ L + L + G+ E+ +GA A RE ++ DI++P+M
Sbjct: 1 MDGRILLVDDEKDILDLLEEVLRRDGFREIRRAKDGAGAIRACREFLPDAVVLDIMLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ ++ E ++F++ + ++KPF R++V V L
Sbjct: 61 DGLEVCKQIRE-FSYCSILFLSSKNDDIDKILGLSCGGDDYITKPFSPREVVFRVKAQLR 119
Query: 120 IK 121
+
Sbjct: 120 RQ 121
>gi|209522684|ref|ZP_03271242.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
gi|209496733|gb|EDZ97030.1| response regulator receiver sensor signal transduction histidine
kinase [Arthrospira maxima CS-328]
Length = 398
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + R L + L + GY+V NG A V E L+L DI+MPE+DG ++
Sbjct: 13 ILIVDDIPENLRLLSQMLLEQGYKVRKAINGQRALQAVEAETPDLILLDIMMPELDGYQV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A+ + ++ ++F++ + + ++KPFH+++++ V LTI
Sbjct: 73 AKYLKDDPTTREIPIIFLSALSDTMDKVLAFDVGGVDYITKPFHVQEVLARVRTQLTI 130
>gi|218246324|ref|YP_002371695.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8801]
gi|257059371|ref|YP_003137259.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8802]
gi|218166802|gb|ACK65539.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8801]
gi|256589537|gb|ACV00424.1| response regulator receiver sensor signal transduction histidine
kinase [Cyanothece sp. PCC 8802]
Length = 374
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + + L L + GYEV NG A + + EP ++L DI MP++DG ++
Sbjct: 11 ILIVDDIPENLQLLFTMLTEQGYEVRRVLNGKQALNAAKIEPPDIILLDIKMPDLDGYQV 70
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D+ V+F++ + ++KPF L++++ V L +
Sbjct: 71 CEKLKSTETTRDIPVIFLSALNDAFDKVKAFEVGGVDYITKPFQLQEVIIRVENQLKL 128
>gi|145297354|ref|YP_001140195.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142850126|gb|ABO88447.1| two-component system response regulator [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 426
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +DD + + + L GYEV + ++ A D++R++ L+L+D+ M MD
Sbjct: 1 MS-RILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R L V+ +T + + L+KP +L + L++
Sbjct: 60 GLALFERIQSQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPIDKDELFATIEHALSL 119
>gi|91789988|ref|YP_550940.1| response regulator receiver protein [Polaromonas sp. JS666]
gi|91699213|gb|ABE46042.1| response regulator receiver protein [Polaromonas sp. JS666]
Length = 125
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+++IL+A+D+ ++ L + + G++V +G +A + + L+L DI++P D
Sbjct: 1 MSKRILIADDEPNIVVSLEFLMKREGFDVQVAVDGEAALQAIAAQVPDLILLDIMLPRKD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ ++ +KV+ +T A ++KPF +DLV +V +LL
Sbjct: 61 GFEVCQQIRANPQWQSVKVVMLTAKGRDTEVSKGLALGADAYMTKPFSTKDLVAQVRQLL 120
>gi|78046340|ref|YP_362515.1| OmpR family two-component response regulator [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|78034770|emb|CAJ22415.1| two-component system regulatory protein, OmpR family [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 259
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 87
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 88 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 143
>gi|254254972|ref|ZP_04948289.1| Response regulator [Burkholderia dolosa AUO158]
gi|124899617|gb|EAY71460.1| Response regulator [Burkholderia dolosa AUO158]
Length = 221
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A+ +R E F L++ D +P MDG
Sbjct: 2 RILVVEDDAEIGAAIRSRLARLGHAVDLEADGATAHGLLRVERFDLVVLDANLPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|284008799|emb|CBA75548.1| two-component system, OmpR family, phosphate regulon response
regulator [Arsenophonus nasoniae]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
+DD +R L + L + G++V S N + E L++ D+++P DG+ + RR
Sbjct: 2 DDDMRLRSLLERYLTEQGFQVRSTANAEQMDRILTRESIHLIVLDLMLPGEDGLSICRRL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T + KPF+ R+L+ + +L +
Sbjct: 62 RSQNNPIPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQ 114
>gi|282882917|ref|ZP_06291522.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
315-B]
gi|300813311|ref|ZP_07093666.1| response regulator receiver domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|281297328|gb|EFA89819.1| transcriptional regulatory protein ResD [Peptoniphilus lacrimalis
315-B]
gi|300512582|gb|EFK39727.1| response regulator receiver domain protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ +R + G+EVV +G A +KV+E F +++ DI+MP +DG
Sbjct: 3 RILVVDDEKKIREVIKTYAEFEGHEVVEAVDGIDAIEKVKENDFDVIVMDIMMPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ D+ V+ ++ ++KPF ++L+ +N ++ N
Sbjct: 63 SYKEIKKI-KDIPVLMLSARGEEYDKLFGFEIGIDDYVTKPFSPKELMARLNVIVNRNN 120
>gi|260888931|ref|ZP_05900194.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
F0254]
gi|260861378|gb|EEX75878.1| transcriptional activator protein Irlr [Leptotrichia hofstadii
F0254]
Length = 227
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K L K Y V SC +G A V + ++ DI++P++DG E
Sbjct: 2 RLLVVEDEKKLNELITKKLKKEYYGVDSCFDGEEAVRYVEGTEYDAIILDIMLPKLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + ++ +T + L KPF +L+ + LL
Sbjct: 62 VIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRR 118
>gi|260910360|ref|ZP_05917033.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260635543|gb|EEX53560.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 858
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL A+D+DD+ + + L Y V++ NG A L+++D++MP+MDG+E
Sbjct: 611 TILFADDNDDVCQMVRTLLATR-YRVLTAPNGEVALQLAELNIPDLVVSDVMMPQMDGLE 669
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR + + V+ +T ++KPF L+ ++ LL +
Sbjct: 670 LCRRLKQTTATSHIPVILLTARTLDEQRIAGYEHGADAYITKPFSAPLLLARIHNLLQSR 729
>gi|317054508|ref|YP_004118533.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
gi|316952503|gb|ADU71977.1| two component transcriptional regulator, winged helix family
[Pantoea sp. At-9b]
Length = 261
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD ++ R L L GY + ++ + ++ L+L D+++P G++
Sbjct: 28 HILIVEDDAEISRSLATFLQAKGYTATTSDSAEAGLLFLKTHAPDLILLDLMLPGESGLD 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D ++ +T N + KPF L L+ + +L
Sbjct: 88 FCRKIRSPDS-PPIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLRR 143
>gi|153807471|ref|ZP_01960139.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
gi|149129833|gb|EDM21045.1| hypothetical protein BACCAC_01751 [Bacteroides caccae ATCC 43185]
Length = 1516
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL ED+ ++R FL Y VV +G + K + ++++D++MPE DGIE+
Sbjct: 1239 LLVEDNQELREFLRSIFTPV-YRVVEAADGMEGWSKALKYLPDIIISDVMMPEKDGIEMT 1297
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + + ++ +T + + ++KPF L V LL
Sbjct: 1298 RELRADMMTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1352
>gi|115371838|ref|ZP_01459151.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
gi|115371073|gb|EAU69995.1| multi-sensor Hybrid Histidine Kinase [Stigmatella aurantiaca DW4/3-1]
Length = 1991
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL +D+ D+R ++ LG+ V + NG A ++VR +P L+L D++MP +DG
Sbjct: 1620 RILLVDDNADLRTYVAGLLGRIFPHVETATNGQDALERVRVQPPDLVLADVMMPGLDGFG 1679
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + ++ ++ A + L KPF R+L+ V L +
Sbjct: 1680 LVRALRADKDTRAIPIILLSARAGDESTVEGLQSGADDYLVKPFSARELLVRVRTHLDM 1738
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLA+D+ DMR +L + L + V + G+ A R P SL+++D++MP ++G+E
Sbjct: 605 RILLADDNADMRIYLSRLLSPH-WSVEPVSEGSLALAAARANPPSLIISDVMMPGVNGLE 663
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + ++ ++ A + L KPF ++L+ V LLT+
Sbjct: 664 LVQSLRADNRTRTIPILLLSARAGEEATIQGLNSGADEYLVKPFSAKELLARVTALLTV 722
>gi|103487528|ref|YP_617089.1| two component transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98977605|gb|ABF53756.1| two component transcriptional regulator, winged helix family
[Sphingopyxis alaskensis RB2256]
Length = 236
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + L AL G+ ++G +A + + P L + DI MP MD
Sbjct: 1 MTATIALVDDDRNILQSLSIALQAEGFVTRVYSDGEAALKPLIDNPPDLAVFDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL RR E L V+F+T A ++KPF R ++ + +L
Sbjct: 61 GLELLRRLREK-SQLPVIFLTSKDDEIDEALGLAMGADDYIAKPFSQRLVIARIRAILRR 119
>gi|331653384|ref|ZP_08354389.1| putative 2-component transcriptional regulator YedW [Escherichia
coli M718]
gi|331049482|gb|EGI21554.1| putative 2-component transcriptional regulator YedW [Escherichia
coli M718]
Length = 260
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|322434235|ref|YP_004216447.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX9]
gi|321161962|gb|ADW67667.1| two component transcriptional regulator, winged helix family
[Acidobacterium sp. MP5ACTX9]
Length = 243
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ EDD +++ L + GY V + G A RE ++ D+++P +
Sbjct: 1 MN-TILVVEDDVRIQKALQRQFSSEGYAVRVVSEGTEAARVCREIKPVAVVLDLMLPGIS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ D V+ ++ + VA ++KPF R+L+ V +
Sbjct: 60 GRDICRQIKTDSVDTPVIILSAISEVADKVLLLEIGADDYVTKPFSPRELLARVQAAIRR 119
>gi|253581579|ref|ZP_04858804.1| two component transcriptional regulator [Fusobacterium varium ATCC
27725]
gi|251836649|gb|EES65184.1| two component transcriptional regulator [Fusobacterium varium ATCC
27725]
Length = 220
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ ++R L L K GY+V +G A E+PF L++ DI++P+ DG
Sbjct: 2 KKILIVEDEMEIRNILKLYLLKEGYDVTEAEDGEVAIKLFYEKPFDLVILDIMLPKKDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + + VM ++ + ++KPF+ + L+ + L+
Sbjct: 62 SVLREIKK-YSSVPVMILSARDDDEDELFGFEIGTDEYITKPFNNKILLARIKTLIK 117
>gi|257792780|ref|YP_003183386.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|317489064|ref|ZP_07947589.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325831130|ref|ZP_08164454.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Eggerthella sp. HGA1]
gi|257476677|gb|ACV56997.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|316911796|gb|EFV33380.1| response regulator receiver domain-containing protein [Eggerthella
sp. 1_3_56FAA]
gi|325487051|gb|EGC89497.1| putative alkaline phosphatase synthesis transcriptional regulatory
protein PhoP [Eggerthella sp. HGA1]
Length = 237
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+++ +D+D++R+ L + L GY + S + + E LLL D+++P +G +
Sbjct: 3 KVMVIDDEDNLRQALEQLLVSNGYAFCGARDAESGLELLASEHPDLLLLDVMLPGTNGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+F++ + ++KPF +L+ + +
Sbjct: 63 LCARIREQGRRIPVIFLSAKCDIVDKSIGFRAGGDDYVTKPFDSTELLLRIEANIRR 119
>gi|226311091|ref|YP_002770985.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226094039|dbj|BAH42481.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 255
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ ED+ + R L L K + V NG A K +L+L D+++P G
Sbjct: 29 THNILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVMLPGRSG 88
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T + ++KPF ++V V+ +L
Sbjct: 89 WSILEYIRAK-SSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRR 146
>gi|170680782|ref|YP_001743277.1| transcriptional regulatory protein YedW [Escherichia coli SMS-3-5]
gi|194433665|ref|ZP_03065941.1| heavy metal response regulator [Shigella dysenteriae 1012]
gi|293405449|ref|ZP_06649441.1| two-component system response regulator YedW [Escherichia coli
FVEC1412]
gi|301018162|ref|ZP_07182681.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
gi|331673476|ref|ZP_08374244.1| transcriptional activator protein CopR [Escherichia coli TA280]
gi|332278865|ref|ZP_08391278.1| transcriptional regulatory protein YedW [Shigella sp. D9]
gi|170518500|gb|ACB16678.1| heavy metal response regulator [Escherichia coli SMS-3-5]
gi|194418094|gb|EDX34187.1| heavy metal response regulator [Shigella dysenteriae 1012]
gi|291427657|gb|EFF00684.1| two-component system response regulator YedW [Escherichia coli
FVEC1412]
gi|300399854|gb|EFJ83392.1| transcriptional activator protein Irlr [Escherichia coli MS 69-1]
gi|320180635|gb|EFW55563.1| Putative two-component system response regulator YedW [Shigella
boydii ATCC 9905]
gi|324119015|gb|EGC12904.1| heavy metal response regulator [Escherichia coli E1167]
gi|331069674|gb|EGI41061.1| transcriptional activator protein CopR [Escherichia coli TA280]
gi|332101217|gb|EGJ04563.1| transcriptional regulatory protein YedW [Shigella sp. D9]
Length = 260
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|149279033|ref|ZP_01885167.1| two-component system response regulator [Pedobacter sp. BAL39]
gi|149230312|gb|EDM35697.1| two-component system response regulator [Pedobacter sp. BAL39]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + +I+ L + G ++ +G + + F L++ DI++ M+GI+
Sbjct: 2 KILLIEDEPGLVSVIIRGLTEVGMQISVAGDGLVGLEMAMKHDFDLIILDIMLSGMNGIQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + + ++ V+ +T ++ L KPF +L + L+
Sbjct: 62 VCREIRKGNNNVPVLMLTALSSTENIITGLDSGADDYLVKPFKFAELEARIRSLVRR 118
>gi|126697892|ref|YP_001086789.1| two-component response regulator [Clostridium difficile 630]
gi|115249329|emb|CAJ67142.1| Two-component response regulator [Clostridium difficile]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPF--SLLLTDIVMPE 58
MN +L+ +DD ++ + K + + ++ + GA V + SL++ DI+MP+
Sbjct: 1 MNS-VLIIDDDKELCALMKKCVEQENLSAITAHCGAEGLHLVDKNRHTLSLVILDIMMPD 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG ++ ++ E ++ V+ +T L+KPF + +L+ VN L+
Sbjct: 60 IDGFQVLKKIRE-TSNIPVIMLTAKNDEDDKVSGLRLGADDYLTKPFSINELMARVNSLI 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|26990437|ref|NP_745862.1| winged helix family two component transcriptional regulator
[Pseudomonas putida KT2440]
gi|24985407|gb|AAN69326.1|AE016570_3 DNA-binding response regulator [Pseudomonas putida KT2440]
Length = 238
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD +R L L + GY+V + A + + L+L DI +P D
Sbjct: 1 MTPRVLIVDDDPLVRDLLQAYLSREGYDVHCADTAERAEALLGSQDVDLVLLDIRLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ ITG + KP + R+LV+ L+
Sbjct: 61 GLTLTRELR-VRSEVGIILITGRNDDIDRIVGLECGADDYVIKPLNPRELVSRAKNLIRR 119
>gi|28211166|ref|NP_782110.1| transcriptional regulatory protein [Clostridium tetani E88]
gi|28203606|gb|AAO36047.1| transcriptional regulatory protein [Clostridium tetani E88]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 5/124 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD + L + +EV C +G S ++++E + L++ D+++P+MDG
Sbjct: 2 KKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL---- 118
++ R + D+ V+ ++ + ++KPF +LV V +
Sbjct: 62 DILRIIHD-TKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120
Query: 119 TIKN 122
+KN
Sbjct: 121 RLKN 124
>gi|17228672|ref|NP_485220.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
gi|17130524|dbj|BAB73134.1| two-component hybrid sensor and regulator [Nostoc sp. PCC 7120]
Length = 440
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +D+ + L A+ G+E++ +G SA ++ ++L D++MPEMDG
Sbjct: 9 KATVLIVDDNPTNLKVLSDAISSLGWEILIATDGESAIEEAEYAQPDIILLDVMMPEMDG 68
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ D+ V+F+T + ++KPF+L +++ + L
Sbjct: 69 FQTCAELKSKTSTKDIPVIFLTALTDQFDKVLALVTGGVDYITKPFNLDEVLVRIQVHLK 128
Query: 120 I 120
+
Sbjct: 129 L 129
>gi|94310569|ref|YP_583779.1| two component transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93354421|gb|ABF08510.1| DNA-binding response regulator in two-component regulatory system
[Cupriavidus metallidurans CH34]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + L+ +L ++G+ V ++GASA + + ++L + DI MP +DG+E
Sbjct: 2 RILLAEDNLKLAESLVDSLSQSGFAVDCMHDGASADHLLTTQDYALAILDIGMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + + V+ +T +V L+KPF L +L L+ +
Sbjct: 62 VLRRLRQRRNPVPVLILTAHGSVEDRVRGLDLGADDYLAKPFALNELEARARALIRRSH 120
>gi|304392753|ref|ZP_07374693.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
gi|303295383|gb|EFL89743.1| transcriptional regulatory protein ChvI [Ahrensia sp. R2A130]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
I L +DD ++ + AL GY V + +GASA D + + L + DI MP MDG+E
Sbjct: 3 TIALVDDDRNILTSVSIALESEGYRVETYTDGASALDGLTAKRPDLAVFDIKMPRMDGME 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + DL V+F+T ++KPF R LV V +L
Sbjct: 63 LLRRLRQK-SDLPVIFLTSKDDEIDELFGLKMGADDFITKPFSQRLLVERVKAVLRR 118
>gi|171319841|ref|ZP_02908923.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia ambifaria MEX-5]
gi|171094903|gb|EDT39933.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia ambifaria MEX-5]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M +L K L +A Y V NG E F L++ D+++PE+DG E
Sbjct: 2 RILIVEDEPKMASYLRKGLTEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T A+ L KPF + + + LL
Sbjct: 62 VLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRR 117
>gi|149917612|ref|ZP_01906109.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis
pacifica SIR-1]
gi|149821675|gb|EDM81073.1| sigma-54 dependent DNA-binding response regulator [Plesiocystis
pacifica SIR-1]
Length = 475
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 64/120 (53%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+Q +L+ +D+ ++ L K L K G+ V++ G A + +R++P +++TD+ MP M G
Sbjct: 6 SQTVLVVDDEANILEALRKVLTKEGFRVLTAGTGRQALEVLRKQPVRVMITDLRMPGMTG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+L + A + P+++V+ +T + V ++ +SKP +V V + L +
Sbjct: 66 DDLLKAAKAITPEVEVIVMTAYGTVENAVEAMKLGAYDFVSKPLKRATVVAAVRKALDKQ 125
>gi|153005118|ref|YP_001379443.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. Fw109-5]
gi|152028691|gb|ABS26459.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. Fw109-5]
Length = 509
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ D R L + L YEV+ +G +A D REE ++L D+ MP +DG++
Sbjct: 195 RLLVVDDEADAREVLTEVLEPE-YEVMLAEDGEAAVDLAREEHPDVVLMDLFMPRLDGLQ 253
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+F++G A+ S L KPF R+L V R L +
Sbjct: 254 ALERLRSDASTSDIPVIFVSGHGDDAVKVRSLDLGAVDYLQKPFSERELRARVERTLRL 312
>gi|299770126|ref|YP_003732152.1| AdeR [Acinetobacter sp. DR1]
gi|298700214|gb|ADI90779.1| AdeR [Acinetobacter sp. DR1]
Length = 247
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD D+ + L + G V+ NG A + +P L+L DI +PE++G E+
Sbjct: 15 ILVVEDDYDIGDIIENYLKREGMVVIRAMNGKQAIELHSSQPIDLILLDIKLPELNGWEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + + KPF+ +++ V +L
Sbjct: 75 LNKIRQK-AQTPVIMLTALDQDIDKVMALRVGADDFVVKPFNPNEVIARVQAVLRR 129
>gi|271499431|ref|YP_003332456.1| winged helix family two component transcriptional regulator
[Dickeya dadantii Ech586]
gi|270342986|gb|ACZ75751.1| two component transcriptional regulator, winged helix family
[Dickeya dadantii Ech586]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ ++IL+ EDD D L L + ++V+ +G + L+L D+++P +
Sbjct: 1 MSLKRILIIEDDTDAASVLEAYLKRDNFQVLLAGDGVGGLEMALRVKPDLILLDVMLPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G E+ D+ V+ +T + ++KP+H ++V V +L
Sbjct: 61 NGTEVLAALRRK-SDVPVIMVTAMGDDTDKIGALRYGADDYVTKPYHPGEVVARVQAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|298346157|ref|YP_003718844.1| response regulator [Mobiluncus curtisii ATCC 43063]
gi|304390083|ref|ZP_07372037.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315654737|ref|ZP_07907643.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
gi|315657339|ref|ZP_07910221.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236218|gb|ADI67350.1| response regulator [Mobiluncus curtisii ATCC 43063]
gi|304326565|gb|EFL93809.1| response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241]
gi|315491201|gb|EFU80820.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
gi|315491811|gb|EFU81420.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LL EDD + L +AL + GYEV + G SA +V + +++ D+ +P+MD
Sbjct: 1 MT-RVLLVEDDPAIAEPLTRALQREGYEVGAHVTGGSALKQVNDS--DMVILDLGLPDMD 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR + ++ +T ++KPF L +L+ V LL
Sbjct: 58 GLDVARTIRAQGITIPILILTARTGEVDMVVGLDAGADDYVTKPFRLGELLARVRALLRR 117
>gi|254460890|ref|ZP_05074306.1| DNA-binding response regulator ChvI [Rhodobacterales bacterium
HTCC2083]
gi|206677479|gb|EDZ41966.1| DNA-binding response regulator ChvI [Rhodobacteraceae bacterium
HTCC2083]
Length = 258
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KI L +DD ++ + L G+EV + N+G SA D + + + DI MP MD
Sbjct: 26 MS-KIALVDDDRNILTSVSMTLEAEGFEVETYNDGQSALDAFNRKLPDMAVLDIKMPRMD 84
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L +R + + V+F+T + KPF R LV + LL
Sbjct: 85 GMDLLQRLRQKTS-MPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRR 143
Query: 121 KN 122
++
Sbjct: 144 QD 145
>gi|156936147|ref|YP_001440063.1| nitrogen regulation protein NR(I) [Cronobacter sakazakii ATCC
BAA-894]
gi|156534401|gb|ABU79227.1| hypothetical protein ESA_04046 [Cronobacter sakazakii ATCC BAA-894]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALSTKTPDVLLSDIRMPGMDGLTL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|197117067|ref|YP_002137494.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
gi|197086427|gb|ACH37698.1| sigma-54-dependent transcriptional response regulator [Geobacter
bemidjiensis Bem]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ +R L + L + V + +G A + ++++ F L++TD+ MP +
Sbjct: 1 MN--ILVVDDESVIRDGLARILEGDSFTVDTAKSGHVAIEHLQQKEFDLIITDLKMPGVS 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ L PD V+ ITGFA V D+ + KPF ++ +V+ L
Sbjct: 59 GFEVLAAVKTLQPDTPVIMITGFATVETAVDAMKNGTVDYIVKPFTPEQILEKVHLALEQ 118
Query: 121 K 121
K
Sbjct: 119 K 119
>gi|189424183|ref|YP_001951360.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter lovleyi SZ]
gi|189420442|gb|ACD94840.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter lovleyi SZ]
Length = 452
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + + L Y ++ +G SA + L+L D++MP +DG E
Sbjct: 18 ILVVDDDANNLAVVRDCLVAFNYTILVAEDGESAVKRADYARPDLILLDVMMPGIDGYET 77
Query: 65 ARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR L + V+F+T A ++KPF +L+ + L +
Sbjct: 78 CRRLKALKSTHAIPVLFMTALAETGNKVKGLEAGAVDYITKPFQREELLARIAVHLHNR 136
>gi|159897134|ref|YP_001543381.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
gi|159890173|gb|ABX03253.1| adenylate/guanylate cyclase [Herpetosiphon aurantiacus ATCC 23779]
Length = 355
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D +D R L + L + Y VV NG A D V+ L+L DI+MP M+G E
Sbjct: 7 RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIMMPVMNGFE 66
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + E + V+ ++ + L+KPF+ L + L K
Sbjct: 67 VLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNTTLLRARIEASLEKK 126
>gi|71066368|ref|YP_265095.1| putative hybrid two-component sensor and regulatory protein
[Psychrobacter arcticus 273-4]
gi|71039353|gb|AAZ19661.1| putative hybrid two-component sensor and regulatory protein
[Psychrobacter arcticus 273-4]
Length = 2284
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +D +R+ + L + G+ VV +G A + ++E L+L DI MP MDG
Sbjct: 2158 NTTILVVDDSVTVRKVTSRFLERHGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDG 2217
Query: 62 IELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+A + L ++ IT + + KPF L++++ LL
Sbjct: 2218 FEVATQVRLNGCLQHLPIIMITSRTGERHRERALKIGVNDYIGKPFQENQLLDKIQSLLD 2277
Query: 120 IK 121
K
Sbjct: 2278 EK 2279
>gi|325275439|ref|ZP_08141370.1| two component heavy metal response transcriptional regulator
[Pseudomonas sp. TJI-51]
gi|324099415|gb|EGB97330.1| two component heavy metal response transcriptional regulator
[Pseudomonas sp. TJI-51]
Length = 224
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L + L + GY V + G R+ P+ L++ D+ +PE+DG
Sbjct: 2 RLLIIEDELRTADYLQQGLRENGYVVDCAHTGTDGLHLARQHPYDLVILDVNLPELDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R ++M +T +A L KPF +L+ + LL
Sbjct: 62 VLQRLRAE-SATRIMMLTAHGRLADRVKGLDLGADDYLLKPFEFPELLARIRSLLRR 117
>gi|315635865|ref|ZP_07891127.1| two component response regulator [Arcobacter butzleri JV22]
gi|315479844|gb|EFU70515.1| two component response regulator [Arcobacter butzleri JV22]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + FL K L + Y V NG + L+L DI++P DGIE
Sbjct: 5 KILIIEDDLKIINFLKKGLEEECYIVDFSTNGDEGLYLASINTYDLILLDIMLPIKDGIE 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T ++ L+KPF +L+ + L I
Sbjct: 65 VCKSLRSSNIQTPIIMLTAKDSIEDKIKGLDIGANDYLAKPFSFAELLARIRVQLRI 121
>gi|307730372|ref|YP_003907596.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1003]
gi|307584907|gb|ADN58305.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1003]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L ED+ +RRF+ AL G V G + L++ D+ +P+ DG
Sbjct: 5 STTVVLIEDEKQIRRFVRAALEGEGMVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ R +L V+ ++ + + L+KPF + +L+ + L +
Sbjct: 65 LDVIRELRG-WSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRR 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|253681316|ref|ZP_04862114.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
gi|253562554|gb|EES92005.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
Length = 235
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+A+D++++ L L K + NG A++ + L + DI+MP++DG
Sbjct: 3 KILIADDEEEIIELLSLYLEKDNNIIYGAKNGLDAFNIIENNNVDLAIIDIMMPKIDGYH 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L ++ E + V+ ++ + + ++KPF+ ++V V L
Sbjct: 63 LVKKIREKYK-IPVIMLSAKSEYSHKILGLELGADDYITKPFNAMEVVARVKAQLRR 118
>gi|170078061|ref|YP_001734699.1| two-component response regulator [Synechococcus sp. PCC 7002]
gi|169885730|gb|ACA99443.1| two-component response regulator [Synechococcus sp. PCC 7002]
Length = 222
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ + FL K G+ V + A D + PF+LL+ D+ +P+ D
Sbjct: 1 MTQ-ILIIEDEPRIASFLEKGFKSEGFTVTIASTAKEALDWALQYPFALLILDLGLPDAD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+E+ ++ +T + L KPF ++L+ V L
Sbjct: 60 GLEVLHDLRGQGVTAPIIILTARDDLDDKVTGLNLGADDYLGKPFSFKELLARVQARLR 118
>gi|153868883|ref|ZP_01998615.1| two-component system response regulator [Beggiatoa sp. PS]
gi|152074551|gb|EDN71394.1| two-component system response regulator [Beggiatoa sp. PS]
Length = 163
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
NQ IL+ ED+ + + L L K+ Y V G V++ +L+L DI++PEMDG
Sbjct: 3 NQHILIVEDEIKIAQLLRDYLEKSDYTVSCLEQGDKVVPYVKQTIPTLILLDIMLPEMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I + R + ++ IT + KPF R++V V +L
Sbjct: 63 IAVCREIR-TFSSVPIIMITAKVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 120
>gi|108763375|ref|YP_634852.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
gi|108467255|gb|ABF92440.1| sensor histidine kinase/response regulator [Myxococcus xanthus DK
1622]
Length = 2478
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+K+L+ +DD L L G +VV NG +A + + + ++L D++MPEMDG
Sbjct: 2358 KKVLVVDDDMRNIFALTSVLENHGMQVVFAENGRAAIEMLEQHRDVDIVLMDVMMPEMDG 2417
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
E R + L ++ +T A A + L KP L+ +
Sbjct: 2418 YETMRAIRKDLKYSSLPIIAVTAKALKDDREKCMAAGASDYLPKPVDTDKLLELIR 2473
Score = 87.1 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 45/121 (37%), Gaps = 9/121 (7%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD R +++ + G++ + G + E + DI +P +DG +
Sbjct: 2092 LLIEDDVKFARIMVQMAREKGFKALVATRGDTGLSMANEFQPHAITLDIQLPVVDGWSVL 2151
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFH---LRDLVNEVNRLLTI 120
R + V I+ V N+ L+KP L + N++ L
Sbjct: 2152 DRLKRNPRTRHIPVHVIS----VMDKNQGNSQGAFGYLTKPVSKEGLERVFNQLASFLER 2207
Query: 121 K 121
K
Sbjct: 2208 K 2208
Score = 75.6 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++LL EDDD R L+K L + G EV + G + F ++ D+++P+ DG
Sbjct: 2210 RRLLLVEDDDVQRDSLVKLLSEGGDVEVTAVATGEEVLHHLETGEFDCVVIDLMLPDTDG 2269
Query: 62 IELARRAT--ELDPDLKVMFITGF 83
I L DL ++ TG
Sbjct: 2270 IRLVEEVKTQNRFRDLPIVIYTGK 2293
>gi|728724|emb|CAA59425.1| nitrogen regulatory protein C [Salmonella enterica subsp. enterica
serovar Typhimurium]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|26249400|ref|NP_755440.1| putative response regulator [Escherichia coli CFT073]
gi|26109808|gb|AAN82013.1|AE016766_101 Putative response regulator [Escherichia coli CFT073]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN +KILL EDD D+ L L GY++V +GA A + ++ + ++ D+++P
Sbjct: 2 MNNVKKILLMEDDYDIAALLRLNLQDEGYQIVHEADGARARLLLDKQTWDAVILDLMLPN 61
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++G+E+ R ++ L V+ I+ + L KPF + +L+ + L
Sbjct: 62 VNGLEICRYIRQMTRYLPVIIISARTSETHRVLGLEMGADDYLPKPFSIPELIARIKALF 121
Query: 119 TIK 121
+
Sbjct: 122 RRQ 124
>gi|298208224|ref|YP_003716403.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Croceibacter atlanticus HTCC2559]
gi|83848145|gb|EAP86015.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Croceibacter atlanticus HTCC2559]
Length = 388
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KIL+ ED+ +RR L K L + YEV +G S + +++ F L+L DI MP+MDG
Sbjct: 3 KILIIEDEAAIRRVLTKILSEENDTYEVQEAEDGLSGIELIKDNDFDLVLCDIKMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ A ++ P+ ++ I+G + ++ +SKP L L+N V L K
Sbjct: 63 VEVLEAAKKIKPETPIVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRIALDRK 122
>gi|110639416|ref|YP_679625.1| two-component response regulator [Cytophaga hutchinsonii ATCC
33406]
gi|110282097|gb|ABG60283.1| two-component response regulator [Cytophaga hutchinsonii ATCC
33406]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ +D+ D+ L L K GY+V + NNG A ++ ++ L+L DI+MP+MDG
Sbjct: 4 NSRILIVDDEQDIIELLEYNLTKEGYDVRTANNGLKAIEEAKDFLPQLILMDIMMPKMDG 63
Query: 62 IELARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+E R+ E+ P LK ++F+T + + ++KP R L++ V+
Sbjct: 64 VESCRKIREI-PKLKESYIIFLTARSEEFSEIAAFEAGADDFITKPIKPRALISRVSAFF 122
Query: 119 TI 120
Sbjct: 123 RR 124
>gi|330951730|gb|EGH51990.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae Cit 7]
Length = 230
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQATTILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + + LL
Sbjct: 61 MDGQQVLSEFRE-WSGVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|281411689|ref|YP_003345768.1| response regulator receiver protein [Thermotoga naphthophila
RKU-10]
gi|281372792|gb|ADA66354.1| response regulator receiver protein [Thermotoga naphthophila
RKU-10]
Length = 122
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M++KILL +D +R+ + L K GYEV+ NG A +K+ E L++ DI+MP MD
Sbjct: 1 MSKKILLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLLEFAPDLIVLDIMMPVMD 60
Query: 61 GIELARRA--TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G + ++ E + V+ +T + + KV+ KPF + EV LL
Sbjct: 61 GFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGAKKVMRKPFSPSQFIEEVKHLL 120
Query: 119 T 119
Sbjct: 121 N 121
>gi|225414512|ref|ZP_03761701.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
DSM 15981]
gi|225041976|gb|EEG52222.1| hypothetical protein CLOSTASPAR_05735 [Clostridium asparagiforme
DSM 15981]
Length = 243
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD- 60
++K+L+ +DD +R+ L K + G++ ++ +G A + F L+L DI+M +D
Sbjct: 13 DEKVLIVDDDPAIRKLLTKVVEGNGFKSMTAASGQEAVALAQNRKFDLILLDIMMNGVDD 72
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R D+ ++ ++G ++KPF+ L ++ L+
Sbjct: 73 GFDAIRSLRATGNDIPIVILSGRTEDFDTLYGLDIGADDYITKPFNPVVLGAKIKALIRR 132
>gi|210622664|ref|ZP_03293304.1| hypothetical protein CLOHIR_01252 [Clostridium hiranonis DSM 13275]
gi|210154102|gb|EEA85108.1| hypothetical protein CLOHIR_01252 [Clostridium hiranonis DSM 13275]
Length = 162
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M +KIL+ ED+ +R F+ L + GY+++ G A +K+ E ++ L D+++P+M
Sbjct: 1 MKEKILILEDEIGIRSFVSINLKREGYDIIEAGTGREAIEKIDSEDGIAIALLDVMLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ + + ++ +T + + + KPF +++L+ V+ L+
Sbjct: 61 SGIEVCKYIRAKYDQVGIIMLTAKSQEEDKIEGFMSGADDYMVKPFSIKELMVRVSALIR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|119509005|ref|ZP_01628156.1| Response regulator receiver domain protein (CheY) [Nodularia
spumigena CCY9414]
gi|119466171|gb|EAW47057.1| Response regulator receiver domain protein (CheY) [Nodularia
spumigena CCY9414]
Length = 121
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +L+ ED R + L +G V ++G A + ++ P L++ DIVMP M+
Sbjct: 1 MS-TVLIVEDSIAQREMITDLLKASGLIVTHAHDGVEALEAIQTAPPDLVVLDIVMPRMN 59
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR ++ V+ + ++KPF +LV V +LL
Sbjct: 60 GYEVCRRLKSNPKTQNVPVVMCSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|94500423|ref|ZP_01306955.1| two-component response regulator NtrC [Oceanobacter sp. RED65]
gi|94427458|gb|EAT12436.1| two-component response regulator NtrC [Oceanobacter sp. RED65]
Length = 474
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+ + +DD +R L KAL + E S +G + + E +++D+ MP MD
Sbjct: 1 MN-KVWIIDDDRSIRWVLEKALEQENIESHSFESGEKVLNALNRETPDAIVSDVRMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ E+ PD+ V+ +T + + +S + L KPF + + V + R +
Sbjct: 60 GLELLKQVHEIQPDIPVIIMTAHSDLDSAVNSYQQGAFEYLPKPFDVDEAVALIKRAINH 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|17549382|ref|NP_522722.1| two-component response regulator transcription regulator protein
[Ralstonia solanacearum GMI1000]
gi|17431635|emb|CAD18312.1| probable two-component response regulator transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 219
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L A YE ++G A +VRE L+L D+++P DG+E+
Sbjct: 2 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 61
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DL ++ +T + KPF R+LV + +L
Sbjct: 62 CREVRA-FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 116
>gi|289663657|ref|ZP_06485238.1| two-component system regulatory protein [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 238
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ +RRFL +L GY V+ + + L++ DI +P+ DG E
Sbjct: 12 RVLIVDDEPQIRRFLDISLRAQGYRVLQAGTAEEGLALLAGQGAELVVLDIGLPDRDGHE 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + + V+ +T A + ++KPF +++L+ + LL
Sbjct: 72 VLREIRQ-WSSVPVIMLTVRAGETEKVAALDAGANDYVTKPFGVQELMARIRSLLR 126
>gi|288959997|ref|YP_003450337.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
gi|288912305|dbj|BAI73793.1| two-component hybrid sensor and regulator [Azospirillum sp. B510]
Length = 1522
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LLA+D+ DMR ++ + L AGY VV+ +G SA VR L+L+D++MP +DG
Sbjct: 741 ETVLLADDNADMRGYVERLLAGAGYRVVAVEDGRSAVTAVRAIRPDLVLSDVMMPHLDGF 800
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +L ++ ++ A D ++KPF R+L+ V L +
Sbjct: 801 GVIDALRRNPDTRELPIILLSARAGEESAIDGFQAGADDYVAKPFSARELIARVEGTLRL 860
Score = 100 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-PFSLLLTDIVMPE-M 59
++ +L+ EDD+++R ++ L Y V+ + SA + P LL TD+VMP +
Sbjct: 1264 SETVLVVEDDEEVRHTVVAMLTDLDYRVLQARDAQSALAILESGVPIDLLFTDVVMPGPL 1323
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+LAR+A E P+L V+F +G+ A+ ++LSKP+ L ++ ++L+
Sbjct: 1324 RSPDLARKAQERFPNLAVLFTSGYTQNAIVHGGRLDPGVELLSKPYSREILARKIRQVLS 1383
Query: 120 IK 121
+
Sbjct: 1384 GR 1385
Score = 87.1 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-REEPFSLLLTDIVMPEMDGI 62
ILL EDD +R + + + G+ V+ + A E LL TD+ +P+ G
Sbjct: 1405 TILLVEDDALIRMAVADMVAELGHRVLEAGSVREALHIAGSEHAIDLLFTDLTLPDGRGE 1464
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+LA P L V+F +G ++ L KP+ L L + L
Sbjct: 1465 DLAAELVRRMPGLPVVFASGRMGPDELDAASFGGKTVHLRKPYDLAGLERAILAAL 1520
>gi|284054063|ref|ZP_06384273.1| adenylate/guanylate cyclase [Arthrospira platensis str. Paraca]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++ R L + L K GY+V+ +NG A +R P L+L DI+MP+M+G ++
Sbjct: 8 VLIVDDNEINRDLLARRLQKQGYDVLVASNGFEALKIMRSTPLDLVLLDIMMPQMNGYQV 67
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ V+ I+ + LSKPF+ L +N L K
Sbjct: 68 LESLKADLQLRHIPVIMISAVNDIDSIVRCIELGAEDYLSKPFNHVLLRARINACLEKK 126
>gi|317152822|ref|YP_004120870.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
gi|316943073|gb|ADU62124.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
Length = 236
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+LL +DD ++ L + L G+ + + NG S + R + L++ D+++P+
Sbjct: 1 MN-KVLLIDDDPELAELLGRYLEGEGFALDATYNGESGLAQARSNEYCLIILDVMLPDTS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R D + V+ +TG +SKPF LR+L+ + +L
Sbjct: 60 GFNVLSRLRG-DSAVPVIMLTGRGEEIDRVVGLEMGADDYVSKPFPLRELLARMRAVLRR 118
>gi|259047260|ref|ZP_05737661.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
gi|259036036|gb|EEW37291.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
Length = 235
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+AEDD +R + L + Y + NG A + + LL++DI+MP MDG L
Sbjct: 12 ILVAEDDHAIRTLITTKLKQENYTIYVAENGEEALSLMEKHQVDLLISDIMMPVMDGYAL 71
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E L ++ IT + + ++ + KP L +LV V LL
Sbjct: 72 VKALRETKHTLPILMITAKSQLESLEEAFKLGVDDYMVKPIRLTELVLRVQALLRR 127
>gi|239942886|ref|ZP_04694823.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 15998]
Length = 256
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +RR + AL + GY V +G S + R LL+ D+++P +DGI L
Sbjct: 27 VLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPALDGIGL 86
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E P + V+ ++ + KP +V + LL
Sbjct: 87 CHRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141
>gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
Length = 1161
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R L L G+ V + +G A +++ PF+++ DI MP MDG E
Sbjct: 191 KILVVDDEQIVRESLKDWLEFEGFVVETATSGQGALERLEATPFAMMFLDIKMPGMDGTE 250
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL-LTIK 121
+ RA E PDL + +T +A V + + + KPF +V+ V ++ L +
Sbjct: 251 VLSRAKEQFPDLVAVMMTAYATVETAVSTMRSGALEYVIKPFDPEKVVSLVKKVFLEQR 309
>gi|90422897|ref|YP_531267.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisB18]
gi|90104911|gb|ABD86948.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisB18]
Length = 241
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +DD +R L + L GY V + + A A K+ F LL+ D++MP G +
Sbjct: 20 HLLLVDDDRRIRDLLSRFLASEGYRVTTAKSAADARSKLNGLYFDLLILDVMMPGETGFD 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LAR + ++ +T + ++KPF R+L+ + +L
Sbjct: 80 LARFIR-TTSSVPIVMLTARHEAESRIEGLQLGADDYVAKPFEPRELLLRIGNILKR 135
>gi|325002312|ref|ZP_08123424.1| two component response transcriptional regulatory protein MprA
[Pseudonocardia sp. P1]
Length = 232
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 53/102 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY+V +G +A D++ + L+ D++MP +DG+E
Sbjct: 2 RILVVDDDKAVRDSLRRSLAFNGYQVDLAEDGQAALDRMLTDRPDALVLDVMMPRVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ RR DL ++ +T AV+ L KPF
Sbjct: 62 VCRRLRSAGDDLPILVLTARDAVSDRVAGLDAGADDYLPKPF 103
>gi|227510397|ref|ZP_03940446.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227190049|gb|EEI70116.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 242
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58
M ILL ED++ + +L L Y ++ +G A D +L++ D ++P+
Sbjct: 12 MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 71
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR + D D+ ++ +T V ++KPF + +L+ + +L
Sbjct: 72 LDGLEVLRRIRQND-DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVML 130
Query: 119 T 119
Sbjct: 131 R 131
>gi|221124430|ref|XP_002164506.1| PREDICTED: similar to sensory histidine protein kinase [Hydra
magnipapillata]
Length = 566
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED ++ + L + G+ V NG A D + + P+ L+L D++MP MDG+E
Sbjct: 312 ILLVEDHAINQKLAVTLLQRWGHHVDVAGNGQIALDMLPKRPYDLILMDMMMPVMDGLEA 371
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
R E + ++ +T A + ++KP +L ++
Sbjct: 372 TRHIRANERGRRIPIIAMTANAMESDRNLCLEAGMDDYIAKPIKSEELQQKI 423
>gi|218281203|ref|ZP_03487727.1| hypothetical protein EUBIFOR_00290 [Eubacterium biforme DSM 3989]
gi|218217591|gb|EEC91129.1| hypothetical protein EUBIFOR_00290 [Eubacterium biforme DSM 3989]
Length = 222
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 58/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+A+D++++ + L L AGY C +G SA + +E + L+ DI+MPE +G E
Sbjct: 2 RLLIADDEENLAQALKAVLEDAGYNCDVCFDGKSAIRLISQEIYDGLILDIMMPEKNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + D+ V+ ++ V LSKPF ++L+ + +L
Sbjct: 62 VLSIIRKKKIDIPVLLLSALNEVDDKVQGFDLGANDYLSKPFSTKELIARIKVMLK 117
>gi|190892100|ref|YP_001978642.1| two-component response regulator protein [Rhizobium etli CIAT 652]
gi|190697379|gb|ACE91464.1| probable two-component response regulator protein [Rhizobium etli
CIAT 652]
Length = 246
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ D++MP DG+
Sbjct: 6 HILIVDDDREIRELVSGYLQKNGLRTSVAADGRQMRSFLDANAVDLIVLDVMMPGDDGLV 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T L+KPF R+L+ + +L
Sbjct: 66 LCRELRSGRHKAIPILMLTARTDEMDRILGLEMGADDYLAKPFAARELLARIKAVLRR 123
>gi|330502123|ref|YP_004378992.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328916409|gb|AEB57240.1| two component transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 244
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AED+ ++ LI L ++G ++G A + LLL D+ MP +DG ++
Sbjct: 18 VLIAEDEAEIADILIAYLQRSGLRTQHASDGQQALAMHQSLKPDLLLLDVQMPVLDGWKV 77
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D V+ +T + KPF+ ++V V +L
Sbjct: 78 LSEIRSRG-DTPVIMLTALDQDIDKLMGLRLGADDYVVKPFNPAEVVARVQAVLRR 132
>gi|328958774|ref|YP_004376160.1| regulatory protein VanR [Carnobacterium sp. 17-4]
gi|328675098|gb|AEB31144.1| regulatory protein VanR [Carnobacterium sp. 17-4]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYEV NG A K++ + L++ D++MP MDG
Sbjct: 2 KILVVDDDKEIVELLSIYIQNEGYEVEKAYNGKEALTKIKTIKNIDLMVLDVMMPNMDGN 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ + + L ++ ++ ++KPF+ +++ + LL N
Sbjct: 62 QVVKEVRKEM-QLPILMLSAKTTDIDKIKGLVTGADDYVAKPFNPLEVMARIKSLLRRSN 120
>gi|257092042|ref|YP_003165683.1| winged helix family two component transcriptional regulator
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257044566|gb|ACV33754.1| two component transcriptional regulator, winged helix family
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 226
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAEDD + L ++L +AGY + NG A + + L++ D+ +P++ G++
Sbjct: 2 RILLAEDDRIIADGLCRSLRQAGYAIDCAYNGLDADTALMTNTYDLVILDLGLPKLPGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ RR + ++ +T ++KPF L +L V L+ ++
Sbjct: 62 VLRRLRARNSSTPILILTALDGTDDRVKGLDLGADDYMAKPFELAELEARVRA-LSRRS 119
>gi|255532713|ref|YP_003093085.1| ATPase [Pedobacter heparinus DSM 2366]
gi|255345697|gb|ACU05023.1| ATP-binding region ATPase domain protein [Pedobacter heparinus DSM
2366]
Length = 1374
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L+ +D+ ++ +L Y+V +G A + EE L++ D++MPE+DG
Sbjct: 1120 KEKLLVVDDNPEIVDYLKNYFSNI-YQVSVAYDGKEALGLLDEEQVDLIICDVMMPELDG 1178
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
I ++ + + V+ +T ++KPF + L ++ +
Sbjct: 1179 IHFCKKIKQNIRTCHIPVVLLTAKNETNHQIKGLEVGADDYVTKPFSIALLEAKLQNI 1236
>gi|253701123|ref|YP_003022312.1| transcriptional regulator [Geobacter sp. M21]
gi|251775973|gb|ACT18554.1| two component transcriptional regulator, winged helix family
[Geobacter sp. M21]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 51/120 (42%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ ED+ D+ + L + G++ + +G ++ L+L D+++P M G
Sbjct: 2 QTVLIIEDEKDLAELIAFNLEREGFQAIVATDGFDGLEQAVRTLPDLILLDLMLPGMLGT 61
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + V+ +T + KPF R+L+ + +L
Sbjct: 62 EVCKNIRKSDRTAGIPVIMLTAKGEEIDKVVGFEVGADDYVVKPFSSRELMLRMKAVLRR 121
>gi|89069932|ref|ZP_01157265.1| DNA-binding response regulator PetR [Oceanicola granulosus
HTCC2516]
gi|89044486|gb|EAR50614.1| DNA-binding response regulator PetR [Oceanicola granulosus
HTCC2516]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ IL+ +DD+ +R L K L + G+ V +GA A + F L++ D++MP
Sbjct: 1 MDEAHILIVDDDERIRGLLQKFLLRNGFLVSVARDGAHARRLLDGLEFDLIVLDVMMPGE 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L R ++ +T L+KPF ++L+ +N +L
Sbjct: 61 DGVSLCRDLRGRLK-TPILLLTAKGETTDRIAGLEAGADDYLAKPFEPKELLLRINAILR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|330831457|ref|YP_004394409.1| two-component system response regulator [Aeromonas veronii B565]
gi|328806593|gb|AEB51792.1| Two-component system response regulator [Aeromonas veronii B565]
Length = 426
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL +DD + + + L GYEV + ++ A D++R++ L+L+D+ M MD
Sbjct: 1 MS-RILLVDDDVSLLKLMSMRLRSQGYEVDTADSAEGALDRLRQQRADLVLSDLRMAGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R L V+ +T + + L+KP + +L + L++
Sbjct: 60 GLALFERIQAQWLGLPVIIMTAHGTIPDAIQATRSGVFSFLTKPINKDELFATIEHALSL 119
>gi|331694656|ref|YP_004330895.1| winged helix family two component transcriptional regulator
[Pseudonocardia dioxanivorans CB1190]
gi|326949345|gb|AEA23042.1| two component transcriptional regulator, winged helix family
[Pseudonocardia dioxanivorans CB1190]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 51/102 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD +R L ++L GY V +G +A D ++ ++ D++MP +DG+E
Sbjct: 2 RILVVDDDRAVRESLRRSLAFNGYTVELAGDGQAALDALQASRPDAMVLDVMMPRLDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF 105
+ RR +L ++ +T AV+ L KPF
Sbjct: 62 VCRRMRAAGDELPILVLTARDAVSDRVAGLDAGADDYLPKPF 103
>gi|315224472|ref|ZP_07866299.1| DNA-binding response regulator/sensor histidine kinase
[Capnocytophaga ochracea F0287]
gi|314945493|gb|EFS97515.1| DNA-binding response regulator/sensor histidine kinase
[Capnocytophaga ochracea F0287]
Length = 934
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED++DMR+F+ L Y ++ NG ++ ++ ++++D++MP+ DG
Sbjct: 684 KPTVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDG 742
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L + + V+ +T +A ++KPF+++ L V +L+
Sbjct: 743 FDLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIE 802
Query: 120 IK 121
+
Sbjct: 803 NR 804
>gi|310818000|ref|YP_003950358.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
DW4/3-1]
gi|309391072|gb|ADO68531.1| DNA-binding response regulator PhoP [Stigmatella aurantiaca
DW4/3-1]
Length = 235
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++R L+ L + GY V + + A A KVR F +++ D+++P+ DG
Sbjct: 9 RILVVEDDLNLRLTLVDNLEEEGYAVEAASTLAEARAKVRGTAFDVVVLDLMLPDGDGYT 68
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +V+ +T + + KP+ LR+L+ + L
Sbjct: 69 LCRELRQAATSSRVLMLTARSLEDDVVKGFEVGADDYVPKPYRLRELLARIRALARR 125
>gi|227112647|ref|ZP_03826303.1| DNA-binding transcriptional regulator BaeR [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 242
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ + + L+ L A Y NG + VR SL+L D+++P D
Sbjct: 9 MASPILIVEDEPKLGQLLVDYLQAADYATHWLPNGNDVVEWVRLHSPSLILLDLMLPGCD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R + ++ ++ +T + + KPF R++V V LL
Sbjct: 69 GLTLCRTIRQ-FSNVPIIMVTARSEEIDRLLGLEIGADDYICKPFSPREVVVRVRTLLRR 127
>gi|226311053|ref|YP_002770947.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226094001|dbj|BAH42443.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ +D+ +R L L G+ NG A L++ DI+MP MDG
Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL ++ + ++ +F++ + + KPF+ ++V+ V L
Sbjct: 72 ELLKKIRHI-SEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRR 128
>gi|15602297|ref|NP_245369.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
gi|12720685|gb|AAK02516.1| PhoB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 231
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KIL+ ED+ +R + L + GY+++ + SA K+ E L+L D ++P
Sbjct: 1 MT-KILVVEDESAIREMISLFLTQQGYDIIEAADYQSAVKKLVE-KPQLILLDWMLPGRS 58
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
GI+ + + ++ V+ +T + ++KPF + L+ + +L
Sbjct: 59 GIQFIQFLKKHEDTENIPVIMLTARSEEEDCITGLNTGADDYITKPFSPKILLARIEAML 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|308270510|emb|CBX27122.1| hypothetical protein N47_A11510 [uncultured Desulfobacterium sp.]
Length = 244
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N++IL+ EDD + L L GY+V +G S +E +L++ DI++P +DG
Sbjct: 6 NKRILIVEDDTHIAEGLKLNLCLQGYDVAIAKDGVSGLHIWKEWRPNLVVLDIMLPGIDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + D + ++ ++ + + LSKPF+L + + V RLL
Sbjct: 66 LSVLQNIRLEDERVPILIVSAKSEANDKIKGLSCGVDDYLSKPFNLEEFLLRVERLLVR 124
>gi|295102996|emb|CBL00540.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Faecalibacterium
prausnitzii SL3/3]
Length = 233
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPE 58
MN +L+ +DD ++ + K + + V + G + + +SL++ D++MP+
Sbjct: 1 MNS-VLIIDDDKELCTLMKKCVEQENLSAVVAHGGLEGLRLLEKNKDTYSLIILDVMMPD 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
M+G ++ ++ E + ++ V+ +T + L+KPF + +L+ VN L+
Sbjct: 60 MNGFQVLQKIREKN-NVPVLMLTAKSDEEDKVSGLRLGADDYLTKPFGINELIARVNSLI 118
Query: 119 TI 120
Sbjct: 119 RR 120
>gi|256819065|ref|YP_003140344.1| two component transcriptional regulator, AraC family
[Capnocytophaga ochracea DSM 7271]
gi|256580648|gb|ACU91783.1| two component transcriptional regulator, AraC family
[Capnocytophaga ochracea DSM 7271]
Length = 934
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED++DMR+F+ L Y ++ NG ++ ++ ++++D++MP+ DG
Sbjct: 684 KPTVLIVEDNEDMRQFIRYILSD-DYNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDG 742
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L + + V+ +T +A ++KPF+++ L V +L+
Sbjct: 743 FDLCQLIKTNVATNHIPVILLTAYALDEQKQVGFESGADAYIAKPFNIKLLKTRVRKLIE 802
Query: 120 IK 121
+
Sbjct: 803 NR 804
>gi|210622429|ref|ZP_03293161.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
gi|210154245|gb|EEA85251.1| hypothetical protein CLOHIR_01109 [Clostridium hiranonis DSM 13275]
Length = 239
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN IL+ ED+ ++ + L GY V NG + E L + DI+MP M
Sbjct: 1 MNAYNILVVEDEKEIAEAVEIYLLNQGYNVFKAFNGMEGLKVLENEEIHLAIVDIMMPVM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DGI +A E + ++ ++ + ++KPF +L+ VN L
Sbjct: 61 DGITFTMKARENH-NFPIIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|307154499|ref|YP_003889883.1| response regulator receiver modulated GAF sensor protein
[Cyanothece sp. PCC 7822]
gi|306984727|gb|ADN16608.1| response regulator receiver modulated GAF sensor protein
[Cyanothece sp. PCC 7822]
Length = 315
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD R L A+ + GY VV+ +G ++ ++L D VMPEMDG
Sbjct: 15 ILVVDDDRSTRTLLKVAMEEEGYRVVTAKDGEECLNEYNRCQPDMVLLDAVMPEMDGFSC 74
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+R TE ++ ++ IT + A ++KP H L V RLLT
Sbjct: 75 CKRLTEISQGHNIPILMITALDDQDSIDQAFACGAVDYITKPIHWAVLAQRVKRLLT 131
>gi|162139518|ref|YP_218884.2| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|168232929|ref|ZP_02657987.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168237620|ref|ZP_02662678.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168244249|ref|ZP_02669181.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263103|ref|ZP_02685076.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|168821659|ref|ZP_02833659.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|194445307|ref|YP_002043227.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449067|ref|YP_002048008.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471706|ref|ZP_03077690.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194734261|ref|YP_002116925.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249100|ref|YP_002148924.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262859|ref|ZP_03162933.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|200388176|ref|ZP_03214788.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204930228|ref|ZP_03221205.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|194403970|gb|ACF64192.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194407371|gb|ACF67590.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194458070|gb|EDX46909.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194709763|gb|ACF88984.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197212803|gb|ACH50200.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197241114|gb|EDY23734.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197289334|gb|EDY28699.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|199605274|gb|EDZ03819.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204320632|gb|EDZ05834.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205332797|gb|EDZ19561.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336843|gb|EDZ23607.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205341828|gb|EDZ28592.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205348067|gb|EDZ34698.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|320088411|emb|CBY98170.1| Acetoacetate metabolism regulatory protein atoC Ornithine/arginine
decarboxylase inhibitor; Ornithine decarboxylase
antizyme [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322613075|gb|EFY10025.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322619146|gb|EFY16029.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322626012|gb|EFY22824.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626530|gb|EFY23336.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632359|gb|EFY29107.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635161|gb|EFY31882.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322642762|gb|EFY39351.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647927|gb|EFY44399.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322650677|gb|EFY47078.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322652860|gb|EFY49197.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657175|gb|EFY53455.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322662339|gb|EFY58554.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322666874|gb|EFY63050.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322672144|gb|EFY68259.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675866|gb|EFY71938.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681720|gb|EFY77746.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684087|gb|EFY80096.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716961|gb|EFZ08532.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323193359|gb|EFZ78574.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197716|gb|EFZ82849.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323200712|gb|EFZ85783.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207285|gb|EFZ92237.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211487|gb|EFZ96328.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323218469|gb|EGA03177.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221051|gb|EGA05483.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226026|gb|EGA10245.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231706|gb|EGA15818.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323236047|gb|EGA20125.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239533|gb|EGA23582.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243875|gb|EGA27886.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323249237|gb|EGA33154.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250521|gb|EGA34404.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258975|gb|EGA42627.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323260220|gb|EGA43843.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323265339|gb|EGA48836.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323270561|gb|EGA54007.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
Length = 469
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|221064867|ref|ZP_03540972.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
gi|220709890|gb|EED65258.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + +L K LG+ G+ V + +NG E+P+ L++ D ++P +DG+
Sbjct: 2 KLLVIEDETKLAEYLQKGLGEEGFVVDAAHNGIDGLHLATEQPYDLIILDGMLPGIDGLA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T A V L KPF +LV ++ LL
Sbjct: 62 VLAALRQSR-QTPVLMLTARAQVEDRVRGLQAGADDYLVKPFAFSELVARIHALLRR 117
>gi|85858813|ref|YP_461015.1| sigma-54 dependent transcriptional regulator [Syntrophus
aciditrophicus SB]
gi|85721904|gb|ABC76847.1| sigma-54 dependent transcriptional regulator [Syntrophus
aciditrophicus SB]
Length = 473
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +IL+ +DD MR L + L GY + + +NG A K R+ F ++TD+ MP M
Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ + ++ P+ V+ IT + V ++ + + KPF L D+ V ++
Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVM 121
>gi|17228665|ref|NP_485213.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17130516|dbj|BAB73127.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 234
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/121 (19%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ + + L + Y V +G A+ + +++++ D ++P + G
Sbjct: 2 RVLLVEDEPDLGAAIKRTLNQQKYLVDWVMDGNDAWTYLENSSAQYTVVILDWMLPGISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL +R L ++ +T + L KPF + +L+ + L +
Sbjct: 62 LELCKRLRYQGNPLPILMLTAKDRMEDKVAGLDAGADDYLVKPFGMVELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|83745654|ref|ZP_00942712.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
gi|83727731|gb|EAP74851.1| Hypothetical Protein RRSL_04718 [Ralstonia solanacearum UW551]
Length = 245
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L A YE ++G A +VRE L+L D+++P DG+E+
Sbjct: 28 ILIVEDEPKLAALMGDYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 87
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DL ++ +T + KPF R+LV + +L
Sbjct: 88 CREVRA-FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 142
>gi|332704290|ref|ZP_08424378.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
gi|332554439|gb|EGJ51483.1| response regulator receiver protein [Desulfovibrio africanus str.
Walvis Bay]
Length = 228
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ ++R L +AL EV + NG A +K+ + + ++L D+ MP +DG+E
Sbjct: 7 RILVVDDEKNIRITLSQALEDL-AEVDTAVNGEEALEKIGRQAYQVVLLDLRMPGIDGME 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR E P++K + IT V ++ L KPF ++ V R+L +
Sbjct: 66 VLRRIAEQRPEIKFVIITAHGTVDNAVEAMKLGALDYLQKPFTPSEVREVVTRILNRE 123
>gi|290769853|gb|ADD61625.1| putative protein [uncultured organism]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 64/118 (54%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ +R + K L ++GYE+ C +G +A + + E + L+L D+ +P+++G+
Sbjct: 2 RLLLIEDEPTLRESVAKKLRRSGYEMDDCGDGETALELLAAERYDLVLLDLNLPKVNGMT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R + D + V+ ++ + ++ + L+KPFHL +L V L +
Sbjct: 62 VLRTLRKTDLETPVLILSARSEISDKVEGLDAGANDYLAKPFHLAELEARVRSLTRRQ 119
>gi|269218605|ref|ZP_06162459.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces sp. oral taxon 848 str. F0332]
gi|269211716|gb|EEZ78056.1| phosphate regulon transcriptional regulatory protein PhoB
[Actinomyces sp. oral taxon 848 str. F0332]
Length = 240
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +LL +D+ + L L ++G+ VV ++GA D + +++TD++MP++DG
Sbjct: 9 QTVLLVDDESAITDALAPYLERSGFSVVVAHDGAEGLDVHEKIKPDIVVTDVMMPQLDGR 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+L R ++ +T + LSKPF ++LV+ + +L
Sbjct: 69 QLVREIRARGGWTPIILLTQIDQSYERSAALDEGADDYLSKPFDPQELVSRIRAVLRR 126
>gi|266620348|ref|ZP_06113283.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
13479]
gi|288868060|gb|EFD00359.1| DNA-binding response regulator DltR [Clostridium hathewayi DSM
13479]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L +AGY+V C G A E P+ +++ D ++P +DG+
Sbjct: 2 RILLVEDDKVLCSTVAMQLEQAGYQVDQCCRGDDALYYATEYPYDVIILDRMLPSLDGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + V+ T + D L KPF + +L+ + +
Sbjct: 62 LLQAIRQKSIMTPVIITTALDGLGDRIDGLDAGADDYLVKPFAVEELLARIRAVTRR 118
>gi|255691704|ref|ZP_05415379.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacteroides finegoldii DSM 17565]
gi|260622643|gb|EEX45514.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Bacteroides finegoldii DSM 17565]
Length = 225
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +R + +L K Y V + ++ SA KV + + +L DI++P+ G++
Sbjct: 2 KILIVEDEPSLRELIQCSLEKERYVVETASDFNSALRKVEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R L V+ I+ ++ L KPFHL +L + ++
Sbjct: 62 LLERLKALHKRENVIIISAKDSLEDKVLGLELGADDYLPKPFHLVELNARIKSVIRR 118
>gi|218258768|ref|ZP_03475054.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM
18315]
gi|218225233|gb|EEC97883.1| hypothetical protein PRABACTJOHN_00710 [Parabacteroides johnsonii DSM
18315]
Length = 1333
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K+L+ ED++++ + L Y+V+ NG K EE L+++D++MP M G
Sbjct: 1082 SYKVLIVEDNEELLQILNALFAPF-YQVILARNGEEGLRKANEEKPDLVVSDVMMPLMSG 1140
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+E+ + + V+ +T +V N + +SKPFH + L+ N L+
Sbjct: 1141 MEMCMKIKNNIDLCHIPVVLLTALDSVEYNIEGLQQGADDYISKPFHAKVLLMRCNNLIR 1200
Query: 120 IK 121
+
Sbjct: 1201 NR 1202
>gi|167839646|ref|ZP_02466330.1| DNA-binding response regulator IrlR [Burkholderia thailandensis
MSMB43]
Length = 229
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AG+ +G + + E + L++ D+++P DG
Sbjct: 2 RILIVEDEPKTGMYLRKGLTEAGFVADWVEDGVTGLHQAETEEYDLIILDVMLPGHDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+F+T V + KPF +LV V +L
Sbjct: 62 VLERLRRERS-TPVLFLTASDDVGDRVKGLELGADDYVVKPFDFVELVARVRSILRR 117
>gi|163814357|ref|ZP_02205746.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
gi|158449992|gb|EDP26987.1| hypothetical protein COPEUT_00508 [Coprococcus eutactus ATCC 27759]
Length = 223
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 119
>gi|320658631|gb|EFX26325.1| transcriptional regulatory protein YedW [Escherichia coli O55:H7
str. USDA 5905]
Length = 260
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|304408338|ref|ZP_07389985.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304342627|gb|EFM08474.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ I++ ED+ + R L + KAGYE G A +++ +L+L D+++P +DG
Sbjct: 2 RTIMVVEDEPAISRVLAAYIKKAGYECAVFTQGELAVEQLTTVQPALILLDVMLPGLDGW 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R V+ +T + + KPF +++ + +L
Sbjct: 62 EVLREVRNR-STCPVIMLTAKGEIGDRLLGLNSGADDYIIKPFEPVEVIARIQAILRR 118
>gi|294499355|ref|YP_003563055.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294349292|gb|ADE69621.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL ED+ + L +E+ +G +K E F L++ DI++P++ G
Sbjct: 2 KKILLIEDEVSIAELQRDYLEINDFEIDVQYSGDKGLEKALNEHFDLVILDIMLPKVSGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ D+ ++ ++ ++KPF +LV V L
Sbjct: 62 EVCKQIRAA-KDIPIILVSAKKEEIDKIRGLGLGADDYITKPFSPGELVARVKAHLAR 118
>gi|293572383|ref|ZP_06683365.1| regulatory protein VanR [Enterococcus faecium E980]
gi|291607543|gb|EFF36883.1| regulatory protein VanR [Enterococcus faecium E980]
Length = 229
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+A+DD ++ L + GYE V +G A K+R P LL+ DI+MPEMDG+
Sbjct: 2 KILIADDDKEIVELLSIYVHNEGYEAVKAYDGKEALSKIRTIPDIDLLILDIMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + + ++ +T ++KPF+ +++ V LL
Sbjct: 62 QVVKELRKE-SQIPIIMLTAKTTDMDKIKGLVAGADDYVTKPFNPLEVMARVKSLLRR 118
>gi|229100480|ref|ZP_04231337.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
gi|228682935|gb|EEL36956.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock3-29]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ EDD +R F+ + +AG+ V+ + G A + + + +++ D+++P +D
Sbjct: 1 MT-TILVLEDDITIRSFITLNMKRAGFNVLETDTGEKALELLEQHNVDIVILDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + D+ ++ +T + KPF + +LV V LL
Sbjct: 60 GFRVCKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRR 119
>gi|256831239|ref|YP_003159967.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
4028]
gi|256580415|gb|ACU91551.1| multi-sensor hybrid histidine kinase [Desulfomicrobium baculatum DSM
4028]
Length = 1078
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 54/119 (45%), Gaps = 5/119 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + L KAG+ V NG D +REE F +L D+ MP M GIE
Sbjct: 954 RLLLAEDEAINQLAMRTLLEKAGHRVSIAQNGQEVLDLLREEDFDCVLMDVQMPVMSGIE 1013
Query: 64 LARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR D+ ++ +T A LSKP L DLV + +L
Sbjct: 1014 ATRRIRTSPELAARKDVPIIALTAHAMSGDRESFLQAGMDDYLSKPVGLDDLVKAIAKL 1072
>gi|261366315|ref|ZP_05979198.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
15176]
gi|282571914|gb|EFB77449.1| DNA-binding response regulator RegX3 [Subdoligranulum variabile DSM
15176]
Length = 218
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q +L+ ED+ + R + +L +AGY +G +A D + + L L DI++P +D
Sbjct: 1 MTQ-VLIVEDEHLIARLIEMSLTRAGYACTVAGDGRTAADLIEANDYDLALLDIMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + V+FIT V + + KPF + +L+ V +L
Sbjct: 60 GYELLDYLRPQG--VPVIFITAKGTVKERVEGLRRGADDYIVKPFVVEELLARVESVLRR 117
>gi|99078349|ref|YP_611607.1| two component transcriptional regulator [Ruegeria sp. TM1040]
gi|99035487|gb|ABF62345.1| two component transcriptional regulator, winged helix family
[Ruegeria sp. TM1040]
Length = 238
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +R L + L + GYEV+ N + ++ +++ DI MP DG+
Sbjct: 8 KRILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTDGL 67
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R ++ + V+ ++ V L+KP LR+L + L +
Sbjct: 68 TALRTLR-VNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQ 125
>gi|332663454|ref|YP_004446242.1| putative two component sigma-54 specific transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
gi|332332268|gb|AEE49369.1| putative two component, sigma54 specific, transcriptional regulator
[Haliscomenobacter hydrossis DSM 1100]
Length = 399
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ +RR L + L ++V +G K++E+ F +L DI MP +D
Sbjct: 1 MTTQILIVDDEASIRRALREILEFEKFKVSEAADGLDCLAKLKEQTFDAILMDIKMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G++ R E+ PD V+ I+G A + ++ +SKP L L+ + L
Sbjct: 61 GMDTLERLQEVAPDTPVIMISGHATIDTAVEAVKRGAFDFISKPPDLNRLLITLRNAL 118
>gi|313679455|ref|YP_004057194.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
gi|313152170|gb|ADR36021.1| two component transcriptional regulator, winged helix family
[Oceanithermus profundus DSM 14977]
Length = 220
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP-EMD-G 61
+ILL ED+ +R + + GY+V ++ +A + + + L++ D+++P +D G
Sbjct: 2 RILLVEDEASLREPMAAYVRSMGYDVDEADSIEAAREALYDAEPDLVILDVMLPEGVDAG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E A E D V+FIT AV L+KPF L +L V LL +
Sbjct: 62 FEFASELREAGFDGPVLFITARDAVEDRVRGLDLGGDDYLTKPFSLEELAARVRALLRRQ 121
>gi|313899159|ref|ZP_07832682.1| response regulator receiver domain protein [Clostridium sp. HGF2]
gi|312956052|gb|EFR37697.1| response regulator receiver domain protein [Clostridium sp. HGF2]
Length = 233
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+AED+ + + L GY+ + NGA A+++++ L + D++MP MD
Sbjct: 1 MSSVILIAEDEASIADAIEIYLKSQGYQTLKAANGAIAWEQLQNNTVDLAIIDVMMPVMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI L + EL + ++ ++ + ++KPF +L+ V+ L
Sbjct: 61 GIALTMKIRELY-EFPIIILSAKSEDIDKITGLNIGADDYVTKPFVPMELLARVHAQLRR 119
>gi|298242873|ref|ZP_06966680.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
gi|297555927|gb|EFH89791.1| two component transcriptional regulator, winged helix family
[Ktedonobacter racemifer DSM 44963]
Length = 235
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +DD + + L K Y+V+ ++G A R++ SL++ D ++P +D
Sbjct: 1 MQHTILVVDDDRKIVDLIRIYLEKERYQVIIASDGPQALKLARQKQPSLIILDWMLPSID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+++ R D+ ++ +T + L+KPF R+
Sbjct: 61 GLDVCRILRAEC-DIPIIMLTARSTEDDKLLGLNLGADDYLTKPFSPRE 108
>gi|255526422|ref|ZP_05393334.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296186394|ref|ZP_06854797.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
gi|255509866|gb|EET86194.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|296048841|gb|EFG88272.1| response regulator receiver domain protein [Clostridium
carboxidivorans P7]
Length = 223
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ ED+ D++ + L A YEV + N+G ++K + + L++ DI++P++ G
Sbjct: 2 KKILVVEDEIDIQNIIKAFLEDACYEVDTSNDGIEGFEKFKLSTYDLIILDIMLPKISGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ +T +SKPF + L+ V +L
Sbjct: 62 AVCEMIRKE-SHVPIIILTALDDDQNQIKGFDLMADDYISKPFSPQILLKRVEAVLRR 118
>gi|227513408|ref|ZP_03943457.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227524551|ref|ZP_03954600.1| response regulator [Lactobacillus hilgardii ATCC 8290]
gi|227083281|gb|EEI18593.1| response regulator [Lactobacillus buchneri ATCC 11577]
gi|227088226|gb|EEI23538.1| response regulator [Lactobacillus hilgardii ATCC 8290]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPE 58
M ILL ED++ + +L L Y ++ +G A D +L++ D ++P+
Sbjct: 1 MANTILLVEDEEGLSSYLTTELQFENYTIILATDGKQALDTYESMRGQLNLIILDWMLPK 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+E+ RR + D D+ ++ +T V ++KPF + +L+ + +L
Sbjct: 61 LDGLEVLRRIRQND-DIPILMMTARDYVGDKVAGLDAGADDYITKPFEIEELLARIRVML 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|254412249|ref|ZP_05026024.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196181215|gb|EDX76204.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 414
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ L L ++V NNG A +V+ L++ D +MP +DG+E
Sbjct: 3 KILVVDDDLTVQLVLKNLLTSQNHDVAIANNGEEALRQVKLFHPDLIICDWIMPRLDGLE 62
Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ DP+L ++ +T + + +SKP + +L+ V L
Sbjct: 63 VCRQVKA-DPELATTFIILLTMRDQITDRVQGLDAGADEFISKPIDMEELLARVRAGLRS 121
Query: 121 K 121
+
Sbjct: 122 R 122
>gi|217978651|ref|YP_002362798.1| two component transcriptional regulator, winged helix family
[Methylocella silvestris BL2]
gi|217504027|gb|ACK51436.1| two component transcriptional regulator, winged helix family
[Methylocella silvestris BL2]
Length = 244
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L GY + + A A ++ F L++ D++MP +G +
Sbjct: 18 HLLVVDDDRRIRALLSRFLTDQGYRITTAGTAAEAMACLKSLTFDLIVLDVMMPGENGFD 77
Query: 64 LARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
A R + D + ++ +T L KP+ R+L + +L
Sbjct: 78 FATRLRQDASDLGHVPILMLTARTETDDRVRGFETGVDDYLGKPYEPRELALRIASILRR 137
>gi|148728193|gb|ABL96292.2| histidine kinase [Pseudomonas fluorescens]
Length = 778
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + LGK G +VV +GA A D++ + F L+L D MP MDG E
Sbjct: 656 RVLLVEDNPVNQLVAKGMLGKLGCDVVVAAHGAEALDQLEHDEFDLVLMDCNMPVMDGYE 715
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R+ + P L ++ +T A A + L+KPF +L +++ +
Sbjct: 716 ASRQIRQSGRWPHLPIVALTANAMSEERERCRAAGMSDYLAKPFRREELATLLDQWI 772
>gi|238563602|ref|ZP_00438600.2| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
gi|251766703|ref|ZP_02264739.2| DNA-binding response regulator [Burkholderia mallei PRL-20]
gi|254208757|ref|ZP_04915105.1| DNA-binding response regulator [Burkholderia mallei JHU]
gi|147750633|gb|EDK57702.1| DNA-binding response regulator [Burkholderia mallei JHU]
gi|238520363|gb|EEP83824.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4]
gi|243064967|gb|EES47153.1| DNA-binding response regulator [Burkholderia mallei PRL-20]
Length = 273
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E
Sbjct: 28 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 87
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 88 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 144
>gi|197119995|ref|YP_002140422.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
gi|197089355|gb|ACH40626.1| response receiver histidine kinase [Geobacter bemidjiensis Bem]
Length = 379
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D+ +R + L Y+V+ +GA A + + ++LTD++MPEMDG
Sbjct: 18 KKTVLIVDDEAVIRDLCKRVL--HDYDVIEAGDGAEALEIFHKGGVDVILTDVMMPEMDG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+EL + E +P + V+ +TGFA L + ++KP +L L + V++ L
Sbjct: 76 LELLKNLKEREPTVVVIIMTGFADKELILKALKADADDFITKPLNLLQLKSAVDKAL 132
>gi|152995826|ref|YP_001340661.1| two component transcriptional regulator [Marinomonas sp. MWYL1]
gi|150836750|gb|ABR70726.1| two component transcriptional regulator, winged helix family
[Marinomonas sp. MWYL1]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 53/118 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED + + + + L G+ V +G A + ++ + L+L D+ +P + G++
Sbjct: 2 RILVVEDTQVLGQAICERLTSLGHGVDLIGDGKRADELLKYQSVDLILLDLNLPGLSGLQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L ++ + D D V+ +T + L+KPF +L LL K
Sbjct: 62 LLQKLRQRDDDTPVLILTARDQIEDRIRLLDAGADDYLTKPFDFGELEARCRALLRRK 119
>gi|156742564|ref|YP_001432693.1| two component transcriptional regulator [Roseiflexus castenholzii
DSM 13941]
gi|219850344|ref|YP_002464777.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|156233892|gb|ABU58675.1| two component transcriptional regulator, winged helix family
[Roseiflexus castenholzii DSM 13941]
gi|219544603|gb|ACL26341.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 232
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 52/106 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + ++ + L + GY V +G A D + PF L++ D+++P++DG+
Sbjct: 2 RVLIVEDERAIAGYIKRGLEEQGYAVDVAYDGREALDWLDAAPFDLVILDLMLPQIDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ R + V+ +T ++ L KPF +++
Sbjct: 62 VCRELRARGFRMPVLMLTARDSIDDRVRGLDSGADDYLVKPFAIQE 107
>gi|29828737|ref|NP_823371.1| two-component system response regulator [Streptomyces avermitilis
MA-4680]
gi|29605841|dbj|BAC69906.1| putative two-component system response regulator [Streptomyces
avermitilis MA-4680]
Length = 262
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + G++ V+ +G A E P +++ D+++P++DG
Sbjct: 20 RLLVVDDDPPIADLVATVARYEGWDAVTAYSGEEALRLAAEFPPDIVVLDLMLPDIDGFG 79
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+F+T VA L KPF + +L+ + +L
Sbjct: 80 VLDRLRRSGTMVPVVFLTARDTVADRVAGLTRGGDDYLVKPFAVEELMARLRTVLRR 136
>gi|159185100|ref|NP_355164.2| two component response regulator [Agrobacterium tumefaciens str.
C58]
gi|159140371|gb|AAK87949.2| two component response regulator [Agrobacterium tumefaciens str.
C58]
Length = 237
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + LG GY V + A A K+ F LL+ D++MP +G+
Sbjct: 17 HLLIVDDDARIRNLLQRFLGDKGYRVSVAGDAAEARRKMVGIRFDLLILDVMMPGENGLS 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + + V+ +T + L+KPF R+LV +N +L
Sbjct: 77 LTRSLNE-NKSVPVILLTARSEADSRIAGLEAGADDYLAKPFDPRELVLRINNILRR 132
>gi|53725411|ref|YP_103471.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
23344]
gi|121601439|ref|YP_992428.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
gi|124384159|ref|YP_001026769.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
10229]
gi|126451092|ref|YP_001079946.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
10247]
gi|126455264|ref|YP_001065533.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1106a]
gi|134283888|ref|ZP_01770584.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 305]
gi|226195325|ref|ZP_03790914.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei Pakistan 9]
gi|237811540|ref|YP_002895991.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei MSHR346]
gi|238562097|ref|ZP_04609887.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
mallei GB8 horse 4]
gi|242317232|ref|ZP_04816248.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1106b]
gi|251767304|ref|ZP_02266740.2| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
gi|254181223|ref|ZP_04887820.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1655]
gi|254195197|ref|ZP_04901626.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei S13]
gi|254260507|ref|ZP_04951561.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1710a]
gi|254359896|ref|ZP_04976166.1| DNA-binding response regulator KdpE [Burkholderia mallei
2002721280]
gi|52428834|gb|AAU49427.1| DNA-binding response regulator KdpE [Burkholderia mallei ATCC
23344]
gi|121230249|gb|ABM52767.1| DNA-binding response regulator KdpE [Burkholderia mallei SAVP1]
gi|124292179|gb|ABN01448.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
10229]
gi|126228906|gb|ABN92446.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1106a]
gi|126243962|gb|ABO07055.1| DNA-binding response regulator KdpE [Burkholderia mallei NCTC
10247]
gi|134244677|gb|EBA44775.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 305]
gi|148029136|gb|EDK87041.1| DNA-binding response regulator KdpE [Burkholderia mallei
2002721280]
gi|169651945|gb|EDS84638.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei S13]
gi|184211761|gb|EDU08804.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1655]
gi|225932527|gb|EEH28525.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei Pakistan 9]
gi|237503786|gb|ACQ96104.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei MSHR346]
gi|238523332|gb|EEP86771.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
mallei GB8 horse 4]
gi|242140471|gb|EES26873.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1106b]
gi|243063242|gb|EES45428.1| DNA-binding response regulator KdpE [Burkholderia mallei PRL-20]
gi|254219196|gb|EET08580.1| KDP operon transcriptional regulatory protein KdpE [Burkholderia
pseudomallei 1710a]
Length = 234
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 3 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 62
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 63 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 121
Query: 118 LTIKN 122
L +N
Sbjct: 122 LRRRN 126
>gi|34556531|ref|NP_906346.1| putative two-component regulator [Wolinella succinogenes DSM 1740]
gi|34482245|emb|CAE09246.1| PUTATIVE TWO-COMPONENT REGULATOR [Wolinella succinogenes]
Length = 222
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 51/121 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ EDD + + + L + +E+ +N A D E PF L + D+ +P D
Sbjct: 1 MAVRILVVEDDPLLGEMMEEFLSEQEFEITLASNAKEALDLAYERPFDLWILDVKLPGGD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + E ++ T + L KPF L++L+ + LL
Sbjct: 61 GFSLLKSLREAGKTTPAIYTTSLHTLQDLESGYESGCDDYLKKPFELKELLVRIKALLKR 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|16762427|ref|NP_458044.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29143915|ref|NP_807257.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|213162857|ref|ZP_03348567.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213425465|ref|ZP_03358215.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213580536|ref|ZP_03362362.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213647957|ref|ZP_03378010.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|25301131|pir||AC0950 Two-component system, response regulator STY3876 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16504732|emb|CAD03095.1| Two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29139551|gb|AAO71117.1| two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
Length = 469
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG ++ NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCITFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|107102351|ref|ZP_01366269.1| hypothetical protein PaerPA_01003413 [Pseudomonas aeruginosa PACS2]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN K+L+ ED+ + ++L + L +AG+ V ++G + LL+ D+++P D
Sbjct: 1 MNMKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R + + V+F+T AV L KPF +L+ V LL
Sbjct: 61 GWQILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRR 120
>gi|329902856|ref|ZP_08273276.1| two component heavy metal response transcriptional regulator,
winged helix family [Oxalobacteraceae bacterium
IMCC9480]
gi|327548595|gb|EGF33254.1| two component heavy metal response transcriptional regulator,
winged helix family [Oxalobacteraceae bacterium
IMCC9480]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ + +L + L + G+ V NG + P+ L++ D+++P++DG
Sbjct: 2 KLLVVEDETKIADYLRQGLTEEGFAVDLARNGLDGHHLAMTAPYDLIILDVMLPDVDGWR 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+F+T +VA L KPF +L+ V L
Sbjct: 62 ILQSLRDAGKNVPVLFLTARDSVADRVKGLELGADDYLVKPFAFSELLARVRTQLRR 118
>gi|309811181|ref|ZP_07704976.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
gi|308434867|gb|EFP58704.1| DNA-binding response regulator MtrA [Dermacoccus sp. Ellin185]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +DD + L L GY V C +G SA R+ L+L D+++P +
Sbjct: 1 MMNRVLIVDDDPALAEMLGIVLRGEGYHVTHCGDGTSALATFRDAKPDLVLLDVMLPGKN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+E+ R D+ ++ +T ++KPF +
Sbjct: 61 GVEVCRAIRAE-SDVPIVMLTARTDTLDVVAGLEAGADDYVNKPFKPAE 108
>gi|288960589|ref|YP_003450929.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288912897|dbj|BAI74385.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED +D+ +I+ L K GY + +G A + + E + L++ D+++P DG
Sbjct: 2 RILVVEDTEDLADAIIQRLRKHGYAIDWAADGYQAEELLAGEEYQLVILDLMLPGPDGQT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ V+ +T + V D+ + KPF R+L LL +
Sbjct: 62 LLRQLRRKGDQTPVLVVTARSRVDTKVDALDLGADDYVVKPFDFRELEARCRALLRRHH 120
>gi|253682442|ref|ZP_04863239.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
gi|253562154|gb|EES91606.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Clostridium botulinum D str. 1873]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ + + L ++VV+ G A + E L++ D+++P+MDG +
Sbjct: 2 KILLVDDEESILNLVRMNLMFENFDVVTAECGKDAIKLFQSELPDLIVLDLMLPDMDGFQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ ++ ++ + ++KPF R+L+ + +
Sbjct: 62 VIHEIQNINSEIPIIVLSAKNQINDKLLGLQLGADDYITKPFDSRELILRIRAISRR 118
>gi|238064443|ref|ZP_04609152.1| LOW QUALITY PROTEIN: two-component system response regulator
[Micromonospora sp. ATCC 39149]
gi|237886254|gb|EEP75082.1| LOW QUALITY PROTEIN: two-component system response regulator
[Micromonospora sp. ATCC 39149]
Length = 111
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 53/110 (48%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + L AL G++V + NG +A R ++ D+++P+ DG ++
Sbjct: 2 LVVDDEPTLADLLSMALRYEGWQVRTAGNGMAALSTARRFQPDAVVLDVMLPDFDGFQVL 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
RR E P + V+F+T AV ++KPF L +++ +
Sbjct: 62 RRLREHTPTVPVLFLTARDAVEERIAGLTVGGDDYVTKPFSLEEVIARLR 111
>gi|166032995|ref|ZP_02235824.1| hypothetical protein DORFOR_02716 [Dorea formicigenerans ATCC
27755]
gi|166027352|gb|EDR46109.1| hypothetical protein DORFOR_02716 [Dorea formicigenerans ATCC
27755]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ +DD ++ + L + Y V+ NG A +K+ ++L D+ MP MD
Sbjct: 1 MNYKILMVDDDRELLKMLNQYFTLKNYTVIIAENGIEAMEKI-SVNPDIILLDVNMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GIE+ RR ++ ++F+T + KPF L++L + L
Sbjct: 60 GIEVCRRIRDMVS-CPIIFLTAKVEEQDRVMGLLSGGDDYVLKPFSLKELDARIIAHLKR 118
Query: 121 K 121
+
Sbjct: 119 E 119
>gi|148655241|ref|YP_001275446.1| two component transcriptional regulator [Roseiflexus sp. RS-1]
gi|148567351|gb|ABQ89496.1| two component transcriptional regulator, winged helix family
[Roseiflexus sp. RS-1]
Length = 264
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 60/117 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+++ILL +D+ ++R L L +AGY+V + + GA A + E+ F LL+ D+ MP +DG
Sbjct: 4 SERILLVDDEANIRLTLGAMLTRAGYDVTTASGGAEAIALLEEQAFDLLIIDLKMPGVDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+++ A PD+ ++ +TG ++ + L K ++ V L
Sbjct: 64 MQVVTAARARHPDVPIIILTGHGSLETAVEGLRQGIFDYLLKNTEPAKVIERVQAAL 120
>gi|83643824|ref|YP_432259.1| response regulator [Hahella chejuensis KCTC 2396]
gi|83631867|gb|ABC27834.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Hahella chejuensis KCTC
2396]
Length = 244
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 52/119 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+IL+ ED+ +R L+ GY+V +G +K + L+L D+++P +G
Sbjct: 14 KARILIVEDETAIRTGLVDVFVYHGYDVDFAVDGDDGLNKSLNGAYDLILLDVMLPGKNG 73
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ D D ++ +T ++ + ++KPF + LV V +L
Sbjct: 74 YEICEAVRLKDRDQPIIMLTAKSSDEDVIHGLSLGADDYVAKPFSVAQLVLRVQAVLRR 132
>gi|21232823|ref|NP_638740.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767106|ref|YP_241868.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|21114648|gb|AAM42664.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572438|gb|AAY47848.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 239
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 51/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A ++ + L++ D++MP DG+
Sbjct: 8 VLVVDDDPDLRKLIGEFLSAHGYQVDVAENVAEMRKRITQRRPDLIVLDVMMPGEDGLSA 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 68 ARSLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 123
>gi|21230253|ref|NP_636170.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|21111797|gb|AAM40094.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 248
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 139
>gi|315223450|ref|ZP_07865307.1| two component system sensor histidine kinase regulator
[Capnocytophaga ochracea F0287]
gi|314946623|gb|EFS98614.1| two component system sensor histidine kinase regulator
[Capnocytophaga ochracea F0287]
Length = 1296
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL +D+ D +L L V+ NG A ++ ++++D++MP M+G +L
Sbjct: 1047 VLLVDDNPDFLNYLYDELRPLFKSVLKAVNGEEALLLLKTHQPDIIISDVMMPVMNGYQL 1106
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ +T + LSKPF + L++ + LL K
Sbjct: 1107 CKEVKEHLQISHIPVILLTAKSDTESQKIGYKLGADAYLSKPFDIDLLLSVIGNLLKQK 1165
>gi|259046372|ref|ZP_05736773.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
gi|259037009|gb|EEW38264.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175]
Length = 220
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED++ +R + + L + G+ V +G A + E L+L DI+MP +G E+
Sbjct: 6 LIVEDEEAIREGVREFLSEQGFTVFEACDGVEALEVFNRESVDLILLDIMMPRKNGFEVL 65
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ ++ +T S + KPF L L + LL
Sbjct: 66 EEVRQK-SNVPILMLTALQDEETQVKSFELLVDGYIQKPFSLMVLYKRIEALLKR 119
>gi|291301374|ref|YP_003512652.1| winged helix family two component transcriptional regulator
[Stackebrandtia nassauensis DSM 44728]
gi|290570594|gb|ADD43559.1| two component transcriptional regulator, winged helix family
[Stackebrandtia nassauensis DSM 44728]
Length = 230
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 45/116 (38%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+AEDD + + L + G+ V +G A +R + DI +P DGIEL
Sbjct: 11 VLIAEDDAAIADLVSMYLRRDGFGVRVETDGVGALTAIRSVRPVAVALDIGLPGKDGIEL 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
V+F+T ++KPF R+L V +L
Sbjct: 71 CTELRAAGDWTPVLFMTARDDEVDRLLGLEIGADDYITKPFSPRELTARVRTVLRR 126
>gi|227873737|ref|ZP_03991967.1| response regulator [Oribacterium sinus F0268]
gi|227840417|gb|EEJ50817.1| response regulator [Oribacterium sinus F0268]
Length = 233
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 49/119 (41%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ ED+ + L +G++V + +G K E + LL+ D+++P DG
Sbjct: 4 KKKILIVEDEASIAELEKDYLELSGFQVETEGDGEKGLKKALEGNYDLLILDLMLPGRDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D+ ++ ++ ++KPF +LV V L
Sbjct: 64 FSITQEVRSK-KDIPILLVSARRDDIDKIRGLGLGADDYMTKPFSASELVARVKAHLAR 121
>gi|160898155|ref|YP_001563737.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160363739|gb|ABX35352.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 221
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + L ++L GY + +G SA + + ++ D+++P +DG
Sbjct: 2 RVLIVEDSQTLAEALSQSLQSEGYACDTAADGVSALKFLASYRYDAIILDLMLPRLDGFG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ ++ + + L+KPF L +L+ + L+
Sbjct: 62 VLRALSREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVRR 118
>gi|120404638|ref|YP_954467.1| two component transcriptional regulator [Mycobacterium vanbaalenii
PYR-1]
gi|119957456|gb|ABM14461.1| two component transcriptional regulator, winged helix family
[Mycobacterium vanbaalenii PYR-1]
Length = 246
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + ++V ++GA A + RE +++ D+ +P +DG+E+
Sbjct: 15 LVVDDEVPLAEVVASYLRREQFDVSLAHSGADALAQAREIDPDVVILDLALPGIDGVEVC 74
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T + ++KPF R+LV + +L
Sbjct: 75 RQLR-TFSDAYVVMLTARDTEMDTIVGLSVGADDYVTKPFSPRELVARIRAMLRR 128
>gi|62130100|gb|AAX67803.1| response regulator in two-component regulatory system with GlnL
(EBP family) [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 488
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 25 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 84
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 85 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 139
>gi|71908559|ref|YP_286146.1| response regulator receiver:ATP-binding region,
ATPase-like:histidine kinase, HAMP region:histidine
kinase A, N-terminal [Dechloromonas aromatica RCB]
gi|71848180|gb|AAZ47676.1| Response regulator receiver:ATP-binding region,
ATPase-like:Histidine kinase, HAMP region:Histidine
kinase A, N-terminal [Dechloromonas aromatica RCB]
Length = 777
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ R L + + S NG A P+ L+L D+ MP MDG+E
Sbjct: 643 RVLLVDDEPINREITQILLEDLHFRIDSAENGEEALALACIYPYDLILMDMQMPVMDGLE 702
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR L ++ +T A A +KP + ++R L+++
Sbjct: 703 ATRRIRALPDGHRFLIIAMTANAFSEDRERCLAAGMDDFTTKPIDPEAFFSLIHRQLSVR 762
Query: 122 N 122
N
Sbjct: 763 N 763
>gi|110633248|ref|YP_673456.1| two component transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110284232|gb|ABG62291.1| two component transcriptional regulator, winged helix family
[Chelativorans sp. BNC1]
Length = 222
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+ R + AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RILVVEDDKDLNRQISVALEDAGYVVDRAFDGEEGHFLGDTEPYDAIVLDIGLPQMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ +T + ++KPFH+ +++ V L+
Sbjct: 62 VLERWRRDGRKMPVLILTARDRWSDKVAGIDAGADDYVTKPFHMEEVLARVRALIRR 118
>gi|322806654|emb|CBZ04223.1| DNA-binding response regulator [Clostridium botulinum H04402 065]
Length = 226
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED++ + RF+ L GYE+V NNG + + + L+L DI++PE++G+E
Sbjct: 3 KILIVEDEEKLSRFIELELKHEGYEIVKANNGRTGLEIAEKGEADLVLLDIMLPEINGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR D+ ++ +T AV ++KPF + +L+ + +
Sbjct: 63 VLRRLR-RTSDIPIIMLTARDAVMDKVSGLDAGADDYITKPFAIEELLARIRTAFKKR 119
>gi|300785585|ref|YP_003765876.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
gi|299795099|gb|ADJ45474.1| two-component system response regulator [Amycolatopsis mediterranei
U32]
Length = 230
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 50/109 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++LLA+DD +R L++AL GY V +G SA R PF +L+ D++MP +D
Sbjct: 4 MPHRVLLADDDRAIRESLVRALDLEGYHVTEVPDGVSALATARRGPFDVLILDVMMPGVD 63
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
G+ + R ++ +T L KPF L +
Sbjct: 64 GLGVCRVLRAEGDPTPILMLTARVETPDRVAGLDAGADDYLPKPFELDE 112
>gi|295425292|ref|ZP_06817995.1| response regulator [Lactobacillus amylolyticus DSM 11664]
gi|295065068|gb|EFG55973.1| response regulator [Lactobacillus amylolyticus DSM 11664]
Length = 259
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ RF+ L YE V NNG D+ E F +L D+++P+++G+E
Sbjct: 24 KILIIEDEKNLARFVQLELQHENYETVVENNGRKGLDRALNENFDAILLDLMLPDLNGLE 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ARR + ++ +T +V + KPF + +L+ + +L
Sbjct: 84 IARRVRQ-SKTTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 139
>gi|291522104|emb|CBK80397.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Coprococcus catus GD/7]
Length = 237
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD ++ R + K L GY + +G A D + L++ DI+MP+M+G+
Sbjct: 4 QTILIVDDDREIVRVIAKILELEGYRTLKAYDGLEALDMLVGNVVHLIMIDIMMPKMNGL 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ ++ + +SKPF+ ++++ V L
Sbjct: 64 AAVMKIRETN-NIPIIILSAKTEETDKVLGLSMGADDYISKPFNTQEMIARVKAQLRR 120
>gi|218283462|ref|ZP_03489462.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
gi|218215844|gb|EEC89382.1| hypothetical protein EUBIFOR_02052 [Eubacterium biforme DSM 3989]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ EDD+++R+ L L YE+V NG AYD +++ L + D+++P M+G
Sbjct: 2 ERVLIVEDDENIRQLLKLTLASFNYELVDFENGKDAYDYLQDNKVDLAILDLMLPGMNGY 61
Query: 63 ELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + DL V+ ++ L+KPF + +L + LL
Sbjct: 62 DILKFIRSKASLKDLPVIILSAKDKELDKIMGLDLGADDYLTKPFSVLELAARIRSLLRR 121
>gi|210616623|ref|ZP_03291153.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
gi|210149733|gb|EEA80742.1| hypothetical protein CLONEX_03374 [Clostridium nexile DSM 1787]
Length = 220
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD ++ L + L +GY+V NG +K ++ L+L DI+MPE DG
Sbjct: 2 KTILIIEDDIMIQNALGELLRVSGYQVFQAYNGIDGVEKFKKNKVDLILLDIMMPEKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ R E+ + ++ +T K + KP+ +R ++ + + N
Sbjct: 62 DVCREVREM-SQVPIIILTALDEEDAEVKCFDLKADDYIVKPYSVRVVLKRIEAIFRRAN 120
>gi|160879763|ref|YP_001558731.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428429|gb|ABX41992.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED+ M + + L K Y V ++G D + +++ DI++P+M+G++
Sbjct: 2 RILLIEDEKYMAEAVAQVLRKNNYTVDLAHDGEYGLDCALSAIYDIIILDIMLPKMNGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ ++ L KPF +L+ + L K
Sbjct: 62 VLKSLRREKIATPVILLSAKGETEDKVRGLDTGADDYLPKPFKTEELLARLRALGRRK 119
>gi|88807565|ref|ZP_01123077.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
gi|88788779|gb|EAR19934.1| two component transcriptional regulator, winged helix family
protein [Synechococcus sp. WH 7805]
Length = 246
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
+ +ILL +D+ + L L GY+V+ +GAS RE P L++ D +P+
Sbjct: 8 SIRILLVDDEARLTDLLKMELEVEGYDVIVAADGASGLFHARETPGPDLIVLDWNLPDFS 67
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ +R ++ +TG ++ + L KPF + +L+ + +
Sbjct: 68 GIDICQRIRSSGVTTPILMLTGHDDISDRVTALDAGVDDYLIKPFSIEELMARLRA-MQR 126
Query: 121 K 121
+
Sbjct: 127 R 127
>gi|323968255|gb|EGB63663.1| heavy metal response regulator [Escherichia coli M863]
gi|323977850|gb|EGB72936.1| heavy metal response regulator [Escherichia coli TW10509]
Length = 260
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|239995340|ref|ZP_04715864.1| two component transcriptional regulator [Alteromonas macleodii ATCC
27126]
Length = 246
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + +I L NG +A +++ PF +++ DI +P +DG+
Sbjct: 3 RVLLVEDDMGLAGNIIDYLELEDMVCDHAANGVAALSLIQKHPFDVVVLDINLPRLDGLS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R E D ++ +T + + L KPF + +LV V L ++
Sbjct: 63 VCERVREDGNDTPIIMLTARDQLENKLEGFQKGADDYLVKPFDMPELVARVFALAHRRS 121
>gi|209523776|ref|ZP_03272329.1| response regulator receiver protein [Arthrospira maxima CS-328]
gi|209495808|gb|EDZ96110.1| response regulator receiver protein [Arthrospira maxima CS-328]
Length = 141
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L LG Y+V NG A V +P L+L DI MPEMDG ++
Sbjct: 11 ILIVDDTPDNLRVLSATLGDRDYDVQCAINGKLALMAVANQPPDLVLLDIKMPEMDGYQV 70
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ V+F++ V + A ++KPF + +++ V LTI+
Sbjct: 71 CEALKSQQKTAEIPVIFLSALDDVIDKVKAFAVGGVDYITKPFQVEEVLARVEHQLTIR 129
>gi|190890997|ref|YP_001977539.1| two-component response regulator protein [Rhizobium etli CIAT 652]
gi|190696276|gb|ACE90361.1| two-component response regulator protein [Rhizobium etli CIAT 652]
Length = 223
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L +AGY V +G + EP+ ++ DI +PEMDG+
Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRAVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|189460890|ref|ZP_03009675.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
gi|189432464|gb|EDV01449.1| hypothetical protein BACCOP_01537 [Bacteroides coprocola DSM 17136]
Length = 1318
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR--EEPFSLLLTDIVMPEMDGIE 63
L+ +D+DD R F+ +LG Y V +NG A+D ++ EE L+++DI+MPEMDG E
Sbjct: 1071 LIVDDNDDFRLFMEYSLGLQ-YRVKLASNGKEAWDILQNSEEMPDLVVSDIMMPEMDGNE 1129
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E + V+ ++ + ++KPF++ LV + +L+ +
Sbjct: 1130 LCRLIKEDKRTAHIPVILLSAKQNTESKVEGLTMGADDYVTKPFNMTILVLRIRKLIEL 1188
>gi|251797251|ref|YP_003011982.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
gi|247544877|gb|ACT01896.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. JDR-2]
Length = 232
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD + + AL + GY V + +G A +K +++ DI+MP+M+G E
Sbjct: 2 KVLVVEDDFSISSAITYALEREGYTVRTAADGEKALEKAEVFKPDVIILDIMMPKMNGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R+ + + V+ +T + ++KPF +R+++ V L +
Sbjct: 62 VFRKLNQKER-PGVLLLTVKNDIVDKVLGLELGADDYMTKPFDIREVLARVKVLYRRSH 119
>gi|29375184|ref|NP_814337.1| DNA-binding response regulator [Enterococcus faecalis V583]
gi|227517526|ref|ZP_03947575.1| response regulator [Enterococcus faecalis TX0104]
gi|255973653|ref|ZP_05424239.1| response regulator [Enterococcus faecalis T2]
gi|257085933|ref|ZP_05580294.1| response regulator [Enterococcus faecalis D6]
gi|307278346|ref|ZP_07559424.1| putative KDP operon transcriptional regulatory protein KdpE
[Enterococcus faecalis TX0860]
gi|21693347|gb|AAM75294.1|AF454824_91 EF0091 [Enterococcus faecalis]
gi|29342643|gb|AAO80408.1| DNA-binding response regulator [Enterococcus faecalis V583]
gi|44933340|gb|AAS49390.1| response regulator [Enterococcus faecalis]
gi|227075046|gb|EEI13009.1| response regulator [Enterococcus faecalis TX0104]
gi|255966525|gb|EET97147.1| response regulator [Enterococcus faecalis T2]
gi|256993963|gb|EEU81265.1| response regulator [Enterococcus faecalis D6]
gi|306504986|gb|EFM74178.1| putative KDP operon transcriptional regulatory protein KdpE
[Enterococcus faecalis TX0860]
gi|315027615|gb|EFT39547.1| putative KDP operon transcriptional regulatory protein KdpE
[Enterococcus faecalis TX2137]
Length = 229
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q ILL EDD ++ F+ LG+ Y++ + G A + F L+L D+ +P++D
Sbjct: 1 MKQSILLIEDDPNITDFMEVVLGQERYQLTIASTGMEALTAFQTTSFDLVLLDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+L + + L ++ I+ + ++KPF +L+ + L
Sbjct: 61 GIDLLKILRKRM-HLPIIIISARNNEEEKVKALDLGADDYVTKPFGTNELLARIRTALRH 119
Query: 121 KN 122
+N
Sbjct: 120 QN 121
>gi|34557245|ref|NP_907060.1| two-component hybrid sensor and regulator [Wolinella succinogenes
DSM 1740]
gi|34482961|emb|CAE09960.1| TWO-COMPONENT HYBRID SENSOR AND REGULATOR [Wolinella succinogenes]
Length = 379
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ K IL+ +D + L+ L Y+V+ +G A + V+ E L+L DI+MPE
Sbjct: 1 MSHKPTILVIDDTESNLDMLMAILKN--YDVIPALSGKEALEIVKNEKIDLILLDIMMPE 58
Query: 59 MDGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ RR E + ++FIT + ++KPF R+L+
Sbjct: 59 MDGYEVCRRLKSEEATRSIPIIFITAKTDEESIELGYSIGGIDYVTKPFKPRELLARAKT 118
Query: 117 LLTIK 121
L +K
Sbjct: 119 QLDLK 123
>gi|33863077|ref|NP_894637.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
gi|124023109|ref|YP_001017416.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
gi|33634994|emb|CAE20980.1| two-component response regulator [Prochlorococcus marinus str. MIT
9313]
gi|123963395|gb|ABM78151.1| two-component response regulator [Prochlorococcus marinus str. MIT
9303]
Length = 241
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 51/117 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I + +DD ++R+ + L GY+V ++ ++ + L++ D+++P DG+
Sbjct: 7 IWVVDDDPELRQMVGTYLIDQGYDVRCLSDVKQLEARLEFQRPDLVVLDLMLPGDDGLSA 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + DL V+ +T L KPF R+L + +L +
Sbjct: 67 LRRLRDAGDDLPVVMLTARGEAVDRIIGLEQGADDYLGKPFLPRELSARIEAVLRRR 123
>gi|117925634|ref|YP_866251.1| two component transcriptional regulator [Magnetococcus sp. MC-1]
gi|117609390|gb|ABK44845.1| two component transcriptional regulator, winged helix family
[Magnetococcus sp. MC-1]
Length = 252
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ EDD+ +R L L + G+ + +G+ + + L++ D+++P DG+
Sbjct: 13 HILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLT 72
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + ++ +T L KPF+ R+L+ +N ++
Sbjct: 73 LTRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRR 131
>gi|330988874|gb|EGH86977.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ IT + KPF R++V V +L
Sbjct: 70 CRELRS-FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 124
>gi|301064957|ref|ZP_07205311.1| PAS domain S-box protein [delta proteobacterium NaphS2]
gi|300440940|gb|EFK05351.1| PAS domain S-box protein [delta proteobacterium NaphS2]
Length = 914
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++LL ED+ +R ++ L KAG+ V +G A + V+++ + ++ DI MP MDG
Sbjct: 662 KARVLLVEDNLVNQRVAVRILEKAGHTVHVAGDGLVALEAVKKDNYDVVFMDIQMPGMDG 721
Query: 62 IELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
++ P +L ++ +T A A +SKP + L+ V R
Sbjct: 722 YAATATIRKMAPRFSELPIIAMTAHAMKGDREKCIASGMDDYISKPVKPKGLLKMVQRW 780
Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 7/122 (5%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPE 58
+L+ +D+ R L K L G +G A + + + PF +L D MPE
Sbjct: 510 HVLIVDDNATNRTILNKTLVSFGCFPEEAESGGEAMELLAQRMAEGRPFDAVLLDHQMPE 569
Query: 59 MDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG + R + + +++ +T L+KP L++ +
Sbjct: 570 MDGEAVVRAIRSKPGNENTRILILTSVGERGDARRFKDLGCCAYLNKPVRQSLLLDALAE 629
Query: 117 LL 118
L
Sbjct: 630 TL 631
>gi|261366160|ref|ZP_05979043.1| transcriptional activator protein Irlr [Subdoligranulum variabile
DSM 15176]
gi|282572055|gb|EFB77590.1| transcriptional activator protein Irlr [Subdoligranulum variabile
DSM 15176]
Length = 226
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ + L + L AGY + A D++ + + L+L DI+MPE+DG +L
Sbjct: 4 ILIVDDEEPITALLCRTLTAAGYRCEGVTDSRLAADRIEQNRYELVLLDIMMPEVDGYDL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R V+F+T AA+ + KPF +L+ V +L
Sbjct: 64 LRFLRPTG--TPVIFLTAKAALEDRVQGLRQGADDYIVKPFAPAELLARVEAVLRR 117
>gi|220917498|ref|YP_002492802.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
gi|219955352|gb|ACL65736.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
Length = 469
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD
Sbjct: 1 MRYRVLIVDDETDSREALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R PD V+ +TG + + + KP + L + R L
Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTIQTAVQAIREGAFDFIEKPLEVPRLRLVLERALEK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|254429139|ref|ZP_05042846.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
gi|196195308|gb|EDX90267.1| response regulator receiver domain protein [Alcanivorax sp. DG881]
Length = 225
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + L+ AL + + V G A D V + L++ D+ +P+M+G ++
Sbjct: 4 VLIVEDEPRIAEPLMFALEREHFAVTHVTLGQQALDAVAGQAVDLVVLDVGLPDMNGFDV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + +L V+F+T ++KPF R++V + +L
Sbjct: 64 LKQLRQ-HSELPVLFLTARQDEVDRILGLELGGDDYVTKPFSPREVVARIRAILKR 118
>gi|254415604|ref|ZP_05029363.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196177554|gb|EDX72559.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 1156
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D + ++ L GY+ +NG+ A K++ + + ++ D MP +DG E
Sbjct: 819 KILLVDDHPINQTVIVNQLQMLGYQPECASNGSEALAKLQAQSYDIVFMDCQMPVLDGYE 878
Query: 64 LARRATEL---DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
R + V+ +T A + A LSKPF L + R
Sbjct: 879 ATRELRRQEGSNRHTIVIALTASALESDREKCLAVGMDDFLSKPFDQDTLQAMIERW 935
Score = 57.1 bits (138), Expect = 9e-07, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 11 DDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-----EPFSLLLTDIVMPEMDGIELA 65
+ R+ + L G ++ + S D +R P+ + + D+ +P G +
Sbjct: 679 NATTRQTVRSHLEAWGMQIDEATDSTSTMDALRNAVSRCHPYDVAILDLQLPGSQGESIV 738
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
K++ IT + + + + L+KP L
Sbjct: 739 PMIRCNPSLASTKLIVITTMHQLDTVQELESMEILGYLTKPMKASQL 785
>gi|17232680|ref|NP_489228.1| two-component response regulator [Nostoc sp. PCC 7120]
gi|17134327|dbj|BAB76887.1| two-component response regulator [Nostoc sp. PCC 7120]
Length = 222
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+AED+ + F+ K L G+ + SA + F L++ D+ +P D
Sbjct: 1 MN-RILIAEDEPRIAAFIEKGLRSQGFTTAVATDAYSATNMALSSGFDLMILDLGLPGKD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+++ ++ V+ +T + L+KPF +L+ V L
Sbjct: 60 GLDVLEELRGQGENIPVIILTARDDIQDKVAGFEAGADDYLTKPFRFEELLVRVKARLR 118
>gi|150389691|ref|YP_001319740.1| two component transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149949553|gb|ABR48081.1| two component transcriptional regulator, winged helix family
[Alkaliphilus metalliredigens QYMF]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/116 (21%), Positives = 53/116 (45%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + + + L + Y + +G A + + F L++ D++MP MDG +L
Sbjct: 4 ILIVEDDANTTKLICAVLKRGNYNCFTARDGLDALSMMERQYFDLIILDLMMPRMDGYQL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ + ++ IT + ++KPF ++++ + LL
Sbjct: 64 CKELRDVGENTPILMITAQQEIKDKHRGFLVGTDDYMTKPFDEQEMLFRIKALLRR 119
>gi|153212561|ref|ZP_01948308.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
gi|229521757|ref|ZP_04411175.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae TM 11079-80]
gi|254225418|ref|ZP_04919029.1| transcriptional regulator CpxR [Vibrio cholerae V51]
gi|297581527|ref|ZP_06943450.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
gi|124116432|gb|EAY35252.1| transcriptional regulator CpxR [Vibrio cholerae 1587]
gi|125622052|gb|EAZ50375.1| transcriptional regulator CpxR [Vibrio cholerae V51]
gi|229341351|gb|EEO06355.1| copper-sensing two-component system response regulator CpxR [Vibrio
cholerae TM 11079-80]
gi|297534365|gb|EFH73203.1| transcriptional regulator CpxR [Vibrio cholerae RC385]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|326793099|ref|YP_004310920.1| transcriptional regulator [Clostridium lentocellum DSM 5427]
gi|326543863|gb|ADZ85722.1| two component transcriptional regulator, winged helix family
[Clostridium lentocellum DSM 5427]
Length = 225
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD + + +LG+ GYEV C N A + E L L D+ +P+ G E
Sbjct: 2 KILVVEDDLSIAMGIEYSLGQEGYEVKVCGNVAEGKAYIENEVVDLCLLDLTLPDGSGYE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + A E + D+ V+F+T ++KPF +R+L++ + +L N
Sbjct: 62 LCKVAKE-NRDIPVIFLTACDDEVNVVMGLDMGADDYVTKPFRIRELISRIKSVLRRHN 119
>gi|258625652|ref|ZP_05720531.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
gi|258581890|gb|EEW06760.1| Transcriptional regulatory protein CpxR [Vibrio mimicus VM603]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V ++ L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVTDQ-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|257484069|ref|ZP_05638110.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331008186|gb|EGH88243.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ IT + KPF R++V V +L
Sbjct: 70 CRELRS-FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 124
>gi|225174332|ref|ZP_03728331.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
gi|225170117|gb|EEG78912.1| two component transcriptional regulator, winged helix family
[Dethiobacter alkaliphilus AHT 1]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++++ + L + GY V+ +G A + + L++ DI+MP MDG L
Sbjct: 4 ILVVEDDRNLQKLMKAVLRQNGYNVLCAEDGVQALELLDSAHVDLIICDIMMPNMDGYAL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +L V+ +T + KP + ++V V LL
Sbjct: 64 TDTLRKANNNLPVLMVTARETFDDKKKGFLVGTDDYMVKPVDMDEMVLRVAALLRR 119
>gi|167588685|ref|ZP_02381073.1| two component transcriptional regulator, winged helix family
protein [Burkholderia ubonensis Bu]
Length = 221
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD ++ + L + G+ V +GA+A +R E F L++ D+++P MDG
Sbjct: 2 RILVAEDDAEIGAAIRSRLTRLGHAVDLETDGATANSLLRVERFDLVVLDVMLPSMDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 ILRHLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|158336595|ref|YP_001517769.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158306836|gb|ABW28453.1| two-component transcriptional regulator [Acaryochloris marina
MBIC11017]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
++LL ED+ D+ + + L + Y V +G A+ + + ++L + D ++P + G
Sbjct: 2 RVLLVEDEPDLGAAIQRTLTQEAYIVDWAKDGREAWGYLESQWTQYTLAIFDWLLPGLSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I+L +R L V+ +T L KPF +L+ + L +
Sbjct: 62 IDLCQRLRAQQSPLPVLMLTAKDQPEDTATGLDAGADDYLVKPFRKIELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|149280656|ref|ZP_01886769.1| two-component system sensor histidine kinase/response regulator
hybrid [Pedobacter sp. BAL39]
gi|149228596|gb|EDM34002.1| two-component system sensor histidine kinase/response regulator
hybrid [Pedobacter sp. BAL39]
Length = 707
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q +L+ EDD + FL K+ GY + NG A ++ + L+++D++MP M G+
Sbjct: 447 QTVLVVEDDPSLLDFLSKSFTAEGYYTLRAKNGKDALKQLDKHQVDLVISDVMMPVMTGV 506
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL R L V+ +T ++KPF + L + LL +
Sbjct: 507 ELCRIIKNDIAYSHLPVVLLTAKTNTEAEIQGLESGADAYIAKPFKWKQLSLIIKNLLEL 566
Query: 121 K 121
+
Sbjct: 567 Q 567
>gi|119486032|ref|ZP_01620094.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
gi|119456807|gb|EAW37935.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
Length = 440
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D R L K + + GY V NG A V+ L+L DI MPEM+G +
Sbjct: 14 ILVVDDTPANLRLLSKMMTEHGYNVRQAINGKMALTAVKAVKPDLILLDINMPEMNGYTV 73
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E + ++F++ + ++KPF L +++ + LTI
Sbjct: 74 CETLKKNEETCSIPIIFLSALDDALDKVKAFQVGGVDYVTKPFQLEEILVRIQNQLTI 131
>gi|71736926|ref|YP_274577.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557479|gb|AAZ36690.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|330890080|gb|EGH22741.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv. mori
str. 301020]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ IT + KPF R++V V +L
Sbjct: 70 CRELRS-FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 124
>gi|77461924|ref|YP_351431.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77385927|gb|ABA77440.1| Two component Transcriptional regulator, Winged helix family
[Pseudomonas fluorescens Pf0-1]
Length = 246
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRSSKHRATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRR 123
>gi|53712177|ref|YP_098169.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides fragilis YCH46]
gi|52215042|dbj|BAD47635.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides fragilis YCH46]
Length = 1328
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G E L+++D++MP DG
Sbjct: 1079 KKTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDG 1137
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1138 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1196
>gi|329849017|ref|ZP_08264045.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
C19]
gi|328844080|gb|EGF93649.1| transcriptional regulatory protein ompR [Asticcacaulis biprosthecum
C19]
Length = 252
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + ++L+ +DD +MR L + L + ++V + + ++ Y + E F LL+ D++MP
Sbjct: 2 MTETKGRLLVLDDDAEMRALLQRYLSENHHQVRAVPDASALYRLLARESFDLLVLDLMMP 61
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ + R+ + ++ +T L+KPF R+L+ + +
Sbjct: 62 GEDGLAVCRKLRGEGQMIPIIMLTARGDPVDRVLGLEMGADDYLAKPFLPRELLARIEAV 121
Query: 118 LTIKN 122
++
Sbjct: 122 RRRQS 126
>gi|310822156|ref|YP_003954514.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
DW4/3-1]
gi|309395228|gb|ADO72687.1| DNA-binding response regulator PhoP2 [Stigmatella aurantiaca
DW4/3-1]
Length = 241
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++R L L GYEV + + A A +RE F LL+ D+++P DG
Sbjct: 14 ILIVEDDANLRLGLQDNLQDEGYEVATAASTAEADALLREREFELLILDVMLPGEDGYAF 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR V+ +T L+KP+ LR+L+ V L+
Sbjct: 74 CRRLRGAGLRSMVLMLTARTLEEDILRGFEAGAQDYLTKPYRLRELLARVRALVRR 129
>gi|295098097|emb|CBK87187.1| transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V N+G +A ++ E +++ + DI MP DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVNDGRAADHLLQGENYAVAILDIGMPGFDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + L V+F+T + VA L KPF L +L + LL
Sbjct: 62 VVHRLRKRGQTLPVLFLTARSNVADRVKGLNAGADDYLPKPFELEELDARLRALLRR 118
>gi|294667110|ref|ZP_06732335.1| two-component system regulatory protein, OmpR family [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
gi|292603120|gb|EFF46546.1| two-component system regulatory protein, OmpR family [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 10535]
Length = 259
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 87
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 88 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 143
>gi|284050134|ref|ZP_06380344.1| response regulator receiver Signal transduction histidine kinase
[Arthrospira platensis str. Paraca]
Length = 372
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL +D + + L GY V +G SA + E+P L+L D++MP +DG E
Sbjct: 14 HILAVDDSPENLFLIEAMLADEGYTVYCQPDGESALKTILEKPPQLVLLDVMMPGIDGYE 73
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR P + ++ IT + + + KP + +L+ V LL +K
Sbjct: 74 VTRRIRNNPNLPFIPILLITAH-DQSSVVEGLDAGADDFIRKPVEIDELLARVRSLLRLK 132
>gi|226357957|ref|YP_002787697.1| response regulator, OmpR [Deinococcus deserti VCD115]
gi|226320200|gb|ACO48193.1| putative response regulator, OmpR [Deinococcus deserti VCD115]
Length = 227
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ EDD D+ + L + AGY V++ N S R E L++ D+ +P+M
Sbjct: 1 MQQTILVIEDDPDIAQILTTEIEDAGYRVLTAPNRMSGLTCARSEAPDLVILDLGLPDMH 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ARR ++ +TG VA + L+KPFH +LV V L
Sbjct: 61 GTEVARRLR-RTSRTPIVVLTGMDTVASKVGLLEAGASDYLTKPFHPEELVARVRVQLR 118
>gi|160935360|ref|ZP_02082742.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC
BAA-613]
gi|158441718|gb|EDP19418.1| hypothetical protein CLOBOL_00255 [Clostridium bolteae ATCC
BAA-613]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 1 MNQK-----ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MN + IL+ ED+ + L +G AGY ++GA + + + ++ D++
Sbjct: 1 MNHRRDSMRILVIEDEKRLAFTLADMIGGAGYYTDVSHDGAEGLELAQTGIYDAIVLDVM 60
Query: 56 MPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+P MDG + + V+ +T + ++ L+KPF + + +
Sbjct: 61 LPGMDGYAVLKNLRSTRNMTPVLMLTARSELSDRVRGLDAGADYYLTKPFATEEFLACLR 120
Query: 116 RLLTI 120
+L
Sbjct: 121 TVLRR 125
>gi|254253753|ref|ZP_04947070.1| Response regulator [Burkholderia dolosa AUO158]
gi|124898398|gb|EAY70241.1| Response regulator [Burkholderia dolosa AUO158]
Length = 224
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L++AL AGY V +GA+ + + ++ +L D+ +P M G++
Sbjct: 2 RLLLVEDDLSIGQSLLRALSDAGYGVEWVRDGAAGHASIDAFEYTAVLLDLGLPGMSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R ++ ++ +T V ++KPF +R+L+ V ++ K
Sbjct: 62 VLRAVRASHKEVPILILTARDDVDTRVQGLDLGADDYIAKPFQVRELLARVRAVMRRK 119
>gi|119945114|ref|YP_942794.1| two component transcriptional regulator, winged helix family
protein [Psychromonas ingrahamii 37]
gi|119863718|gb|ABM03195.1| two component transcriptional regulator, winged helix family
protein [Psychromonas ingrahamii 37]
Length = 236
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D ++R L + + Y V +G + L++ D+++P DG+
Sbjct: 5 HLLIVDDHYEIRELLQRFFIQHNYRVTVAKDGKEMKRCLSLSKIDLIVLDLMLPGEDGLS 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R + ++ ++ +T + L+KPF+ R+L+ + +L N
Sbjct: 65 LCRGLR-VSSNIPIVMLTAMSDEMDTIIGLEMGADDYLAKPFNPRELLARIKAVLRRVN 122
>gi|146300629|ref|YP_001195220.1| two component transcriptional regulator [Flavobacterium johnsoniae
UW101]
gi|146155047|gb|ABQ05901.1| two component transcriptional regulator, winged helix family
[Flavobacterium johnsoniae UW101]
Length = 220
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 57/112 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + +FL + L + GY++ + N+G+ ++ + F L+L D ++P+++G++
Sbjct: 2 HILIVEDELGIVQFLEQGLREEGYQITTANDGSKGFELTQNHTFDLILLDWMLPKINGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
L + D ++F+T V + + KPF +LV V
Sbjct: 62 LCKAIRIKDKKTPIIFLTAKDTVQETIEGLRAGANDYIKKPFSFEELVERVK 113
>gi|66769754|ref|YP_244516.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992968|ref|YP_001904978.1| Two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. B100]
gi|66575086|gb|AAY50496.1| two-component system regulatory protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734728|emb|CAP52938.1| Two-component system regulatory protein [Xanthomonas campestris pv.
campestris]
Length = 248
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 22 VLVVEDNRNISEMIGEYLEGRGFEVDYAVDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 81
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 82 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 139
>gi|186687169|ref|YP_001870312.1| two component transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186469472|gb|ACC85271.1| two component transcriptional regulator, winged helix family
[Nostoc punctiforme PCC 73102]
Length = 228
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD+ + + L + L + V +G ++ + + L+L D+++P +DGI
Sbjct: 2 RILIIEDDERIAKPLAEDLKHQHHVVDIACDGIEGWEYAQAGNYDLILLDLMLPRLDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L +R + + ++ +T L KPF L +L + L+ ++
Sbjct: 62 LCKRLRASNYNAFILMLTARDTTPNKIIGLDAGADDYLVKPFDLEELAARIRA-LSRRS 119
>gi|302387482|ref|YP_003823304.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
gi|302198110|gb|ADL05681.1| two component transcriptional regulator, winged helix family
[Clostridium saccharolyticum WM1]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD ++ + +++ + C +G +++ + L+L D++MP +D
Sbjct: 1 MSYKILVIDDDKELCALIKQSVAVESIDADHCYSGTDGLAMLQKNDYQLILLDVMMPGLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + ++ +T L+KPF + +L+ V L+
Sbjct: 61 GFQTMEKIRQK-SSVPILMLTSKNDSTSKIRGLRSGADDYLTKPFDMDELIARVVSLIRR 119
>gi|284053606|ref|ZP_06383816.1| two component LuxR family transcriptional regulator [Arthrospira
platensis str. Paraca]
Length = 203
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 2/116 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
+L +DD ++ + L GY+V NG A +K+ EE L++ DI+MPEMDG L
Sbjct: 1 MLVDDDPNLVILVSDYLELRGYQVTIAENGQKALEKLEEEVPELIICDIMMPEMDGYTLV 60
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ E + V+F++ + KPF +L+ +V L
Sbjct: 61 KLIRENSQFGWIPVIFLSAKGQSEDRVKGLNTGADVYMVKPFDPEELMAQVESSLR 116
>gi|323343098|ref|ZP_08083329.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463162|gb|EFY08357.1| response regulator [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 231
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD ++R + + L GYEVV ++G A + +E L++ D++MPE+ G
Sbjct: 2 KKILIVDDDKEIRDLMKRYLEIDGYEVVVASDGHDAMRAL-DESIKLVILDVMMPEITGF 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E++ + ++ ++F++ A + LSKPF +L V LL
Sbjct: 61 EVSEAIRKHY-NVPILFVSAKATEQDKFVGFSVGGDDYLSKPFSFSELSLRVKSLLRR 117
>gi|239904983|ref|YP_002951722.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
gi|239794847|dbj|BAH73836.1| two-component hybrid sensor and regulator [Desulfovibrio magneticus
RS-1]
Length = 1055
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL ED+ R + L + G++V + NG A + EPF+L+L D+ MP MDG+E
Sbjct: 923 LLVEDEALARLAIQGMLRREGHDVRTVENGREALTLLAREPFALVLMDVQMPAMDGLEAT 982
Query: 66 RRATE-----LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR ++ +T +A A ++KP L +L+ ++++L+
Sbjct: 983 RRIRSGEAGLAAARTPIVAMTAYAMQGDKERFLAAGMDGYVTKPVELGELLAVIDQVLSH 1042
Query: 121 K 121
+
Sbjct: 1043 R 1043
>gi|256822513|ref|YP_003146476.1| two component heavy metal response transcriptional regulator,
winged helix family [Kangiella koreensis DSM 16069]
gi|256796052|gb|ACV26708.1| two component heavy metal response transcriptional regulator,
winged helix family [Kangiella koreensis DSM 16069]
Length = 230
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ +L + LG+AG+ VV NG + E F L++ D+++P++DG +
Sbjct: 2 KLLLVEDEPKTGDYLRQGLGEAGFVVVLVRNGLDGHHLAMTESFDLIILDVMLPDVDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+F+T +V L KPF +L+ V LL
Sbjct: 62 IVKALRQIGCRTPVLFLTARDSVDDRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118
>gi|224585815|ref|YP_002639614.1| nitrogen regulation protein NR(I) [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|224470343|gb|ACN48173.1| two-component system, response regulator [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
Length = 471
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + NG + + +LL+DI MP MDG+ L
Sbjct: 8 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 68 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 122
>gi|66045291|ref|YP_235132.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
gi|63255998|gb|AAY37094.1| Response regulator receiver:Transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae B728a]
Length = 230
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQATTILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + V LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|302340428|ref|YP_003805634.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301637613|gb|ADK83040.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 232
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN + IL+ +D+ + + L L GY+V + G +A + E F L++ D+ +P
Sbjct: 1 MNSDKHILVVDDEPHILQILHFLLTDEGYQVTTVETGEAAVETADSEDFDLVVLDLALPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R D + ++ ++ + KPF+ R+L+ V L+
Sbjct: 61 IDGFSVCRTLR--DKGIPILILSSHDEDDYVVSGLELGALDYVRKPFNHRELILRVANLI 118
Query: 119 TI 120
Sbjct: 119 GR 120
>gi|295108701|emb|CBL22654.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus obeum
A2-162]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD + L+K L K GY S +G A + ++ +L++ D+++P +
Sbjct: 1 MNYTILIVDDDMAINDMLVKYLRKNGYTTYSAYSGTEALLFLEKQKVNLIILDLMLPGLS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + ++ V+ ++ ++KPF + +L+ + +L
Sbjct: 61 GEQVLAEIKK-TKNVPVIGLSAKEDSKSKIFLLKNGADDYVTKPFDIEELLARIETILRR 119
>gi|218887083|ref|YP_002436404.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758037|gb|ACL08936.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 486
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 58/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R+ + L G++V + + G VREE L++ D+ MP MDG+
Sbjct: 3 KILIVDDELQLRQSFQRLLAGEGHDVRAASTGEQGIKLVREELPELVIMDVRMPGMDGLT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R E+D L V+ +T ++ ++ + KPF + D++ + + +
Sbjct: 63 ALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAVE 118
>gi|220906986|ref|YP_002482297.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7425]
gi|219863597|gb|ACL43936.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7425]
Length = 228
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 48/117 (41%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+IL+ ED+ + F+ K L G+ + A D F LL+ D+ +P DG+
Sbjct: 2 HRILIVEDEPRIAAFVEKGLRSHGFVTSVATDANEALDLALGGAFDLLILDLGLPGQDGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + L ++ +T + S L+KPF +L+ V L
Sbjct: 62 QVLGQLRGQGESLPIIILTARDDIRDKIASFEGGADDYLTKPFRFEELLLRVKARLR 118
>gi|197122715|ref|YP_002134666.1| Fis family transcriptional regulator [Anaeromyxobacter sp. K]
gi|196172564|gb|ACG73537.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter sp. K]
Length = 469
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD
Sbjct: 1 MRYRVLIVDDETDSREALAELTQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R PD V+ +TG + + + KP + L + R L
Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTIQTAVQAIREGAFDFIEKPLEVPRLRLVLERALEK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|89893206|ref|YP_516693.1| hypothetical protein DSY0460 [Desulfitobacterium hafniense Y51]
gi|219666479|ref|YP_002456914.1| signal transduction histidine kinase, LytS [Desulfitobacterium
hafniense DCB-2]
gi|89332654|dbj|BAE82249.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536739|gb|ACL18478.1| signal transduction histidine kinase, LytS [Desulfitobacterium
hafniense DCB-2]
Length = 1018
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ + L+ L Y V NG +A ++ + L + D++MP + G E
Sbjct: 692 ILVVDDEFSNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGYE 751
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R+ E +L ++ +T A + KPF +R+L V+ L+ +K
Sbjct: 752 VCRKIRETYSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQLK 811
Query: 122 N 122
N
Sbjct: 812 N 812
>gi|304385704|ref|ZP_07368048.1| response regulator [Pediococcus acidilactici DSM 20284]
gi|304328208|gb|EFL95430.1| response regulator [Pediococcus acidilactici DSM 20284]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYE VS NG A K+ +P L++ DI+MPEMDG+
Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + D +L ++ ++ ++KPF+ +++ V LL
Sbjct: 62 QVVREVRK-DSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118
>gi|258655134|ref|YP_003204290.1| winged helix family two component transcriptional regulator
[Nakamurella multipartita DSM 44233]
gi|258558359|gb|ACV81301.1| two component transcriptional regulator, winged helix family
[Nakamurella multipartita DSM 44233]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++LL +D+ + R L L ++VV+ +G+ A + P L++ D+ +P++D
Sbjct: 1 MS-RVLLVDDEPQLLRALRINLAARHFDVVTAEDGSGALEAAATHPPDLVVLDLGLPDLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ RR + + ++ ++G + + ++KPF L +L + +
Sbjct: 60 GVEVIRRLR-VWTAVPIIVLSGRVGSSDKVLALDAGADDYVTKPFSLDELFARIRAVTRR 118
>gi|167750125|ref|ZP_02422252.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
gi|167656868|gb|EDS00998.1| hypothetical protein EUBSIR_01094 [Eubacterium siraeum DSM 15702]
gi|291556575|emb|CBL33692.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium siraeum
V10Sc8a]
Length = 244
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
++IL+ ED+D +R F++ L ++GY+V+ +N A A D + L DI+MP MD
Sbjct: 2 KRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + + ++ ++ + ++KPF +LV V+ +
Sbjct: 62 GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRR 121
>gi|160940196|ref|ZP_02087541.1| hypothetical protein CLOBOL_05085 [Clostridium bolteae ATCC
BAA-613]
gi|158436776|gb|EDP14543.1| hypothetical protein CLOBOL_05085 [Clostridium bolteae ATCC
BAA-613]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ EDD+ + + L KAGYE V +NG A+D +E L++TD++MP ++G +
Sbjct: 5 KILIVEDDEKLSQLYKIVLNKAGYETVLASNGQEAWDIFDQEHIDLVITDVMMPVLNGYD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + +P + V+ IT ++KP + ++V V L+ N
Sbjct: 65 LVKILRNENPLIPVLMITAKDDYPSKSKGFTLGIDDYMTKPIDVNEMVLRVKALMRRAN 123
>gi|157373114|ref|YP_001481103.1| nitrogen regulation protein NR(I) [Serratia proteamaculans 568]
gi|157324878|gb|ABV43975.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Serratia proteamaculans 568]
Length = 470
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG V+ NG + + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGVSCVTFENGNAVLEALATQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|115523941|ref|YP_780852.1| two component transcriptional regulator [Rhodopseudomonas palustris
BisA53]
gi|115517888|gb|ABJ05872.1| two component transcriptional regulator, winged helix family
[Rhodopseudomonas palustris BisA53]
Length = 231
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLASALTDAGYVVDRAFDGEEGHFLGDTEPYDAVVLDIGLPKMDGIA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + +SKPFHL +++ + LL
Sbjct: 62 VLEAWRRNARAMPVLILTARDRWSDKVQGFDAGADDYVSKPFHLEEVLARIRALLRR 118
>gi|167569384|ref|ZP_02362258.1| DNA-binding response regulator KdpE [Burkholderia oklahomensis
C6786]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 4/125 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M++ ++L ED+ +RRF+ AL + G V G + L + D+ +P
Sbjct: 3 MSEPTVTVVLIEDEKQIRRFVRSALEEEGIAVFDAETGRQGLIEAATRKPDLAIVDLGLP 62
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ DG+++ R ++ V+ ++ + L+KPF + +L+ +
Sbjct: 63 DGDGLDVIRELRG-WSEMPVIVLSARTHEEEKVAALDAGADDYLTKPFGVSELLARIRAH 121
Query: 118 LTIKN 122
L +N
Sbjct: 122 LRRRN 126
>gi|163749261|ref|ZP_02156510.1| putaive two-component response regulator [Shewanella benthica KT99]
gi|161330980|gb|EDQ01906.1| putaive two-component response regulator [Shewanella benthica KT99]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 52/121 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ ED+ D+ L G EV NG + E F ++ D+++P+MD
Sbjct: 1 MRSKLLIVEDNQDIAGILADYFEVQGAEVDFATNGELGFKLALESDFDAIILDLMLPKMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ +A+ + ++ +T + L+KPF L L ++ L+
Sbjct: 61 GLSVAKELRKQGCTTPILMLTALDDKQDLLNGFESGADDYLAKPFDLDVLNARISALIKR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|114707398|ref|ZP_01440295.1| putative transcription regulator (with tandem n-terminal response
regulator domains) protein [Fulvimarina pelagi HTCC2506]
gi|114537279|gb|EAU40406.1| putative transcription regulator (with tandem n-terminal response
regulator domains) protein [Fulvimarina pelagi HTCC2506]
Length = 454
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ +D + L L ++VV +NG A R EP L+L+D++MPE+D
Sbjct: 1 MSGRILIVDDSAINLKLLEARLTAEYFDVVQASNGEEALAICRSEPLDLVLSDVMMPEVD 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL R L V+ IT + L+KP L + V L
Sbjct: 61 GFELCRALKSDPRTTHLPVVLITALDQPSDRVRGLEAGADDFLTKPVRDLPLFSRVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 64.4 bits (157), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 42/121 (34%), Gaps = 8/121 (6%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE- 63
I++ D ++ + ++L G V + +A+ V++ L + D+V +G +
Sbjct: 156 IVVVSDHARLQARIARSLQTIG-SVREFADYDTAFAAVQKRQVMLTVVDLV--GGNGTDP 212
Query: 64 --LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R E + ++ IT + + +P +LV L
Sbjct: 213 IRFLARCRASEKSRGMPIIAITAADDDRTAAKALEIGAYDYVQRPVDCNELVARSRTQLA 272
Query: 120 I 120
Sbjct: 273 R 273
>gi|77917975|ref|YP_355790.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
gi|77544058|gb|ABA87620.1| two component signal transduction response regulator [Pelobacter
carbinolicus DSM 2380]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN++IL+ ED+ + L L +A +E +G VR+ SL+L D+++P D
Sbjct: 1 MNERILIVEDESRLSSLLADYLRQANFEPHILADGLPVVSWVRDNHPSLILLDLMLPGRD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + D+ ++ +T + KPF R++V V +L
Sbjct: 61 GMEICKEIRG-FSDVPIIMVTARIEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRR 119
>gi|332096243|gb|EGJ01246.1| acetoacetate metabolism regulatory protein atoC domain protein
[Shigella dysenteriae 155-74]
Length = 133
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+D++RR L A G+E NNG +A + ++L DI MPEMDGI+
Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +A V ++ + KPF L +L V R L +++
Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQS 124
>gi|319408901|emb|CBI82558.1| transcriptional regulator OmpR [Bartonella schoenbuchensis R1]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L K G+ V N A ++ F LL+ D++MP +GI+
Sbjct: 14 HLLVIDDDTRIRSLLSQFLIKNGFRVSVSANADEARRQLASLDFDLLIVDVMMPGENGID 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ ++ +T + LSKPF+ R+L+ +N +L
Sbjct: 74 LTLSLRQ-TKNVPILMLTALSETDNRIHGLEAGADDYLSKPFNPRELLLRINAILRR 129
>gi|296283968|ref|ZP_06861966.1| phosphate regulon response regulator [Citromicrobium bathyomarinum
JL354]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ K++L EDD + L GY+V +G A E+ L++ D ++ G
Sbjct: 3 SAKLILVEDDPALAELLEFRFANEGYQVRVTADGDEALLMASEDVPDLIILDWMIEGTSG 62
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
IE+ RR + ++ +T A L+KPF R+L+ V ++
Sbjct: 63 IEVCRRLRRDKGTAHVPIIMLTAREAEDDRVRGLETGADDYLTKPFSPRELLARVAAVMR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|228960939|ref|ZP_04122572.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798835|gb|EEM45815.1| hypothetical protein bthur0005_43940 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 23/118 (19%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++ILL ED+ + L ++V ++G +E ++L++ DI++P+M+G
Sbjct: 2 KRILLIEDEVSIAELQRDYLEINDFQVDVEHSGEIGLQTALQEDYNLIILDIMLPKMNGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ ++ + D+ ++ ++ ++KPF +LV V +
Sbjct: 62 EICKQIRAV-KDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHIAR 118
>gi|171059251|ref|YP_001791600.1| two component transcriptional regulator [Leptothrix cholodnii SP-6]
gi|170776696|gb|ACB34835.1| two component transcriptional regulator, winged helix family
[Leptothrix cholodnii SP-6]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 59/118 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ M+ L +A + G +VV+C +GA A D+ + ++L D+ +P +DG+E
Sbjct: 2 KLLLIEDNLAMQTSLQRAFERRGMQVVTCADGARALDRWQASQPDVVLLDLSLPGVDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RA V+ +T AV L+KPF L +L V L+ +
Sbjct: 62 VLTRARAEGLRTPVIILTARGAVGDRVLGLNTGADDYLAKPFDLDELEARVKALVRRQ 119
>gi|302337766|ref|YP_003802972.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
gi|301634951|gb|ADK80378.1| two component transcriptional regulator, winged helix family
[Spirochaeta smaragdinae DSM 11293]
Length = 231
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 46/116 (39%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ ++ L L GYEV +G L++ DI++P DG +
Sbjct: 4 ILIIEDEPGLQMTLEDRLRVEGYEVTLAGDGLRGEAAALTGQHDLIILDIMLPGRDGFSV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + ++KPF + L+ V LL
Sbjct: 64 CSRLRKAGINTPVLMLTARGSDIDIVAGLRQGADDYMAKPFDMNVLLARVEALLRR 119
>gi|300923861|ref|ZP_07139879.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
gi|300419894|gb|EFK03205.1| transcriptional activator protein Irlr [Escherichia coli MS 182-1]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|294678357|ref|YP_003578972.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
gi|294477177|gb|ADE86565.1| transcriptional regulator ChvI [Rhodobacter capsulatus SB 1003]
Length = 233
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +I L +DD ++ + L GYEV + N+G +A D + + + DI MP MD
Sbjct: 1 MS-RIALVDDDRNILTSVSMTLEAEGYEVETYNDGQAALDAFSKRLPDMAVLDIKMPRMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL +R + + V+F+T + KPF R LV + LL
Sbjct: 60 GMELLQRLRQKT-TMPVIFLTSKDDEIDEVLGLRMGADDYVKKPFSQRLLVERIRALLRR 118
Query: 121 K 121
+
Sbjct: 119 Q 119
>gi|255319358|ref|ZP_05360575.1| transcriptional activator protein IrlR [Acinetobacter
radioresistens SK82]
gi|262379800|ref|ZP_06072956.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
gi|255303751|gb|EET82951.1| transcriptional activator protein IrlR [Acinetobacter
radioresistens SK82]
gi|262299257|gb|EEY87170.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ + R+L K L ++GY ++G + L++ D+++PE++
Sbjct: 1 MN--ILIIEDEQKIARYLAKGLTESGYRTWLAHDGREGLMLFEQHAIDLVILDVMLPELN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + ++ V+F+T +V L KPF +L+ V LL
Sbjct: 59 GWQVIQTLRQ-FSEVPVLFLTARDSVLDRVKGLELGADDYLVKPFSYIELLARVKTLLRR 117
Query: 121 KN 122
+
Sbjct: 118 SS 119
>gi|253563785|ref|ZP_04841242.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_2_5]
gi|251947561|gb|EES87843.1| two-component system sensor histidine kinase/response regulator
hybrid [Bacteroides sp. 3_2_5]
Length = 1361
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G E L+++D++MP DG
Sbjct: 1112 KKTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDG 1170
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229
>gi|254519614|ref|ZP_05131670.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
gi|226913363|gb|EEH98564.1| DNA-binding response regulator [Clostridium sp. 7_2_43FAA]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + L GY V NG + + +E L + DI+MP MDGI +
Sbjct: 6 VLVVEDEKEIADAIEIYLKNQGYNVFKGYNGIEGLEIISKEEIHLAIVDIMMPRMDGIAM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D V+ ++ + ++KPF +L+ VN L
Sbjct: 66 TMKLREKY-DFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFTPLELLARVNSQLRR 120
>gi|194440153|ref|ZP_03072201.1| heavy metal response regulator [Escherichia coli 101-1]
gi|256022375|ref|ZP_05436240.1| transcriptional regulatory protein YedW [Escherichia sp. 4_1_40B]
gi|293415278|ref|ZP_06657921.1| two-component system [Escherichia coli B185]
gi|194420916|gb|EDX36955.1| heavy metal response regulator [Escherichia coli 101-1]
gi|291432926|gb|EFF05905.1| two-component system [Escherichia coli B185]
gi|324018823|gb|EGB88042.1| transcriptional activator protein Irlr [Escherichia coli MS 117-3]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|146309575|ref|YP_001190040.1| two component, sigma54 specific, Fis family transcriptional
regulator [Pseudomonas mendocina ymp]
gi|145577776|gb|ABP87308.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Pseudomonas mendocina ymp]
Length = 446
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 63/121 (52%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++++ +D+ +R + + L +G+ V +C + A A V + ++++D+ MP D
Sbjct: 1 MSAQVIVVDDEAAIREAVQQWLELSGFTVRTCASAAEALAVVDRDFPGIVVSDVRMPGSD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G++L + ++D DL V+ +TG V + + + KPF L++ V R L
Sbjct: 61 GLQLLDKLLQVDADLPVILVTGHGDVPMAVQALRQGAYDFIEKPFTPERLLDSVRRALDK 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|330940315|gb|EGH43425.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. pisi str. 1704B]
Length = 230
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQSTTILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + + LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|330811228|ref|YP_004355690.1| response regulator, OmpR family [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327379336|gb|AEA70686.1| Putative response regulator, OmpR family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +R L L +G+ V + N A +VRE L + D+ +P + G+E
Sbjct: 2 KLLVVEDEALLRHHLQTRLTDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L RR D ++ +T + A + KPF +L +N LL +
Sbjct: 62 LIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120
>gi|308273138|emb|CBX29741.1| Acetoacetate metabolism regulatory protein atoC [uncultured
Desulfobacterium sp.]
Length = 450
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ + + L L G+EV++ +NG + EE L+L DI MP +DGIE
Sbjct: 5 ILIVDDNPSIIQSLKGLLTDEGFEVITASNGYEGLKLIDEESPDLVLLDIWMPGIDGIET 64
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
++ + +P ++V+ ITG + ++ ++ KP + ++ +N L +
Sbjct: 65 LKQIKKDNPYIQVIIITGHGNIETAVNAIKLGAYDLIGKPLSIDKIIVTINNALNFR 121
>gi|300818609|ref|ZP_07098817.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
gi|300528781|gb|EFK49843.1| transcriptional activator protein Irlr [Escherichia coli MS 107-1]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|253773085|ref|YP_003035916.1| transcriptional regulatory protein YedW [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253324129|gb|ACT28731.1| two component heavy metal response transcriptional regulator,
winged helix family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448922|gb|ACX39344.1| two component heavy metal response transcriptional regulator,
winged helix family [Escherichia coli DH1]
gi|315136606|dbj|BAJ43765.1| transcriptional regulatory protein YedW [Escherichia coli DH1]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|224539755|ref|ZP_03680294.1| hypothetical protein BACCELL_04664 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518626|gb|EEF87731.1| hypothetical protein BACCELL_04664 [Bacteroides cellulosilyticus
DSM 14838]
Length = 152
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ K+LL ED+ + + L + + + +G + +L+ D++MP M
Sbjct: 7 MDKIKVLLVEDEQTLAMIIKDTLEGQNFIIHTAADGEEGLRMFFDLRPDVLVADVMMPRM 66
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG E+ R + D V+F+T +++ + L KPF +++L+ + L
Sbjct: 67 DGFEMVRHIRQTDKRTPVLFLTARSSINDVVEGFELGANDYLKKPFGMQELIVRIKAL 124
>gi|172062381|ref|YP_001810032.1| two component heavy metal response transcriptional regulator
[Burkholderia ambifaria MC40-6]
gi|171994898|gb|ACB65816.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia ambifaria MC40-6]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M +L K L +A Y V NG E F L++ D+++PE+DG E
Sbjct: 2 RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T A+ L KPF + + + LL
Sbjct: 62 VLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRR 117
>gi|77460461|ref|YP_349968.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77384464|gb|ABA75977.1| two-component system, transcriptional regulatory protein PhoP
[Pseudomonas fluorescens Pf0-1]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +R L L ++G+ V S N A + + F L + D+ +P M G++
Sbjct: 2 KLLVVEDEALLRHHLQTRLTESGHVVESVANAEEALYQTGQFNFDLAVIDLGLPGMSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R+ ++ +T + A L KPF +L +N LL +
Sbjct: 62 LIRQLRSGGKTFPILILTARGNWQDKVEGLAAGADDYLVKPFQFEELEARLNALLRRSS 120
>gi|25026834|ref|NP_736888.1| sensory transduction protein [Corynebacterium efficiens YS-314]
gi|259506103|ref|ZP_05749005.1| phosphate regulon transcriptional regulatory protein PhoB
[Corynebacterium efficiens YS-314]
gi|23492113|dbj|BAC17088.1| sensory transduction protein [Corynebacterium efficiens YS-314]
gi|259166319|gb|EEW50873.1| phosphate regulon transcriptional regulatory protein PhoB
[Corynebacterium efficiens YS-314]
Length = 240
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + + + L +AG+E V + G A + R +++ D+ +PE+DG+E
Sbjct: 14 RVLIVDDEKPLAQMVETYLLRAGFETVQAHTGIDAVHEARRFSPDVVILDLGLPELDGLE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ D ++ +T + ++KPF +R+LV V ++
Sbjct: 74 VCRQVRA-FSDCYILMLTARGSEEDKITGLTMGADDYITKPFGIRELVTRVRAVMRR 129
>gi|119356708|ref|YP_911352.1| two component transcriptional regulator [Chlorobium
phaeobacteroides DSM 266]
gi|119354057|gb|ABL64928.1| two component transcriptional regulator, winged helix family
[Chlorobium phaeobacteroides DSM 266]
Length = 236
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD ++ + L L +AGY G A +++ + F L+L D+++P +DG ++
Sbjct: 7 LVVEDDQNLAKLLGYNLERAGYRHQLSPTGEDALEQLAKRRFDLVLLDLMLPGIDGFDVC 66
Query: 66 RRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + D+ ++ +T + KPF R+L + +L
Sbjct: 67 RKIRQNQLLRDIPIIMLTAKGEEIDKVLGFELGIDDYVVKPFSPRELTLRIRAILKR 123
>gi|329956909|ref|ZP_08297477.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
gi|328523666|gb|EGF50758.1| response regulator receiver domain protein [Bacteroides clarus YIT
12056]
Length = 1352
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 3/121 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL+ ED+D++R +L + L Y V C+NG SA V+E L+++DI+MPEM G
Sbjct: 1091 QKILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIVKEYFPDLIISDIMMPEMRGD 1149
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL + + ++ +T D + + KPF++ L + LL
Sbjct: 1150 ELCQIVKNDIDTSHIPIILLTALNTDKNIIDGLQTGADEYVVKPFNIGILRATIANLLAN 1209
Query: 121 K 121
+
Sbjct: 1210 R 1210
>gi|322834357|ref|YP_004214384.1| transcriptional regulator [Rahnella sp. Y9602]
gi|321169558|gb|ADW75257.1| two component transcriptional regulator, winged helix family
[Rahnella sp. Y9602]
Length = 228
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + L K G+ + +G + + P+ ++ D+ +P MDG++
Sbjct: 2 RILLIEDDKMIGDGIKAGLAKLGFTLDWFTDGLTGKAALDSAPYDAVILDLSLPGMDGMQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L R + D V+ +T A+ L KPF L ++ + L+ ++
Sbjct: 62 LLREWRKAGRDTPVLILTARDALEQRVGGLQAGADDYLCKPFALVEVAARLQALIRRRH 120
>gi|300856229|ref|YP_003781213.1| putative two-component response regulator [Clostridium ljungdahlii
DSM 13528]
gi|300436344|gb|ADK16111.1| predicted two-component response regulator [Clostridium ljungdahlii
DSM 13528]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ ++ L L Y V + +GA A + + +++ DI+MP+M+G+E
Sbjct: 2 RILLAEDEKELSNALAAILKHNNYSVDAVYDGADALKCGLYKSYDVIILDIMMPKMNGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ ++ +T A + LSKPF + +L+ V+ + K+
Sbjct: 62 ALGNLRKEGIHTPILMLTAKAEIEDRILGLNTGADDYLSKPFAMGELLARVHAMTRRKS 120
>gi|294142678|ref|YP_003558656.1| OmpR/PhoB family response regulator [Shewanella violacea DSS12]
gi|293329147|dbj|BAJ03878.1| response regulator, OmpR/PhoB family [Shewanella violacea DSS12]
Length = 246
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 50/121 (41%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+ + L Y V A + + + F L+L D ++P+ DG
Sbjct: 13 SHHILIVEDEPDLANLIKLNLNTLSYGVSHSTTLKHARETLEIKQFDLILIDRMLPDGDG 72
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I L ++ E + M +T + A L KPF + +L V LL
Sbjct: 73 IMLCQQLRESGQTVPCMMLTAKDSEADIVLGLEAGADDYLVKPFSVLELRARVKALLRRS 132
Query: 122 N 122
+
Sbjct: 133 H 133
>gi|295680605|ref|YP_003609179.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295440500|gb|ADG19668.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + + L++AL A Y V +G + + ++L+L D+ +P M GIE
Sbjct: 2 RVLIVEDDLQIGQSLLRALQDAEYSVDWVRDGNAGSAAIAAVEYTLVLLDLGLPGMGGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + A E + ++ +T + + KPFHL +L+ + +L +
Sbjct: 62 LLKAAREKGSKVPILILTARDDLDARVQGLDFGADDYVLKPFHLPELLARIRAVLRRR 119
>gi|258404681|ref|YP_003197423.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
gi|257796908|gb|ACV67845.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
Length = 452
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ D+R L L G+ V+ ++G + + + L+ DI +P MD
Sbjct: 1 MQARILVVDDELDIRVSLSGILEDEGHTVMEADSGEAGLTAMAGKEIDLVFLDIWLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ + R + PD+ V+ I+G + + + KP L +V N+ L
Sbjct: 61 GLAVLERLRQEWPDIPVIMISGHGTIETAVSAIKNGAHDFIEKPLSLEKVVITANKALE 119
>gi|218887570|ref|YP_002436891.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758524|gb|ACL09423.1| multi-sensor hybrid histidine kinase [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 1071
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD+ + L + GY +G A + + + + +L DI MP+MDG+E
Sbjct: 941 RILVVDDDEVNLITAQRLLTRLGYIADRAASGRQALEMLGRDHYDAVLMDIQMPDMDGME 1000
Query: 64 LARRATELD--------PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
R+ + P + V+ +T A + A L+KP + L +
Sbjct: 1001 ATRQIRMREAVLPGTTPPWVPVLALTAHAMLGDRERFLAAGMNDYLAKPIEIDQLDARLR 1060
Query: 116 RLLT 119
L
Sbjct: 1061 AHLN 1064
>gi|85859214|ref|YP_461416.1| response regulator [Syntrophus aciditrophicus SB]
gi|85722305|gb|ABC77248.1| response regulator with GAF and HD domains [Syntrophus
aciditrophicus SB]
Length = 494
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAG-YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +D +R + +AL + G YEV NG A ++ + ++++D++MP M G
Sbjct: 16 KRILIVDDYPQLRTVVKEALEREGNYEVNEAENGLEALKLLQNADYDMIISDVMMPGMGG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
I+L + E+ + + IT + AV + + KPF + +L+ +VN L K
Sbjct: 76 IDLLKSIKEVRSNAVTIMITAYPAVETTVSAIKKGAIDFIKKPFDIDELLFKVNLYLRKK 135
>gi|77460250|ref|YP_349757.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77384253|gb|ABA75766.1| two-component system, response regulator [Pseudomonas fluorescens
Pf0-1]
Length = 241
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQTATILVIDDEPQIRKFLRISLASQGYKVLEAGTGAEGLAQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E V+ ++ A+ + ++KPF +++ + V LL
Sbjct: 61 MDGQQVLREFRE-WATAPVLVLSVRASEGQKVQALDGGANDYVTKPFGIQEFLARVRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|51246573|ref|YP_066457.1| Ntr family protein two-component system response regulator
[Desulfotalea psychrophila LSv54]
gi|50877610|emb|CAG37450.1| related to two-component system response regulator (Ntr family)
[Desulfotalea psychrophila LSv54]
Length = 460
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 55/118 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ MR F L K GY+ + N A + +EP L++TDI MP G +L
Sbjct: 4 ILVVDDERSMREFFKILLHKEGYKAYTTANINEAREIFSQEPIDLIITDIRMPSGSGFDL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E +P + ++ IT F + +SKPF++ ++ + V L N
Sbjct: 64 LENIREENPHIPIILITAFTEPNDALRAMKNGAFDYISKPFNIEEIKSVVKSALQKSN 121
>gi|16331899|ref|NP_442627.1| OmpR subfamily [Synechocystis sp. PCC 6803]
gi|1001817|dbj|BAA10698.1| OmpR subfamily [Synechocystis sp. PCC 6803]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+ILL ED+ D+ + K L Y V +G+ A+D + + ++L + D ++P + G
Sbjct: 2 RILLVEDETDLGMAIKKVLVSEKYVVDWVTDGSQAWDYLENQWTEYTLAIVDWLLPGLSG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+EL ++ L V+ +T + L+KPF + +L+ + L +
Sbjct: 62 LELCQKLRTQGNSLPVLMLTALGEPENRVEGLDAGADDYLTKPFVMAELLARLRA-LQRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|326201907|ref|ZP_08191777.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
gi|325987702|gb|EGD48528.1| two component transcriptional regulator, winged helix family
[Clostridium papyrosolvens DSM 2782]
Length = 228
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +DD ++ + L Y V NGA A L++ DI+MP MD
Sbjct: 1 MN--ILVCDDDKEIVDAIEIYLKNEDYCVYKAYNGAEALLVFDNYEIHLVIIDIMMPVMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + E ++ V+ ++ + ++KPF+ +LV V LL
Sbjct: 59 GIRATMKIREKY-NIPVLMLSAKSEDTDKIIGLNMGADDYVTKPFNPLELVARVKSLLRR 117
>gi|322419014|ref|YP_004198237.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M18]
gi|320125401|gb|ADW12961.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M18]
Length = 396
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D+ + L GY+V + + + + E L+L D +MP MDG+
Sbjct: 11 RVLIIDDEKVILDLTGIILKNRGYQVFTALSALEGLETIEIERPELVLLDYMMPNMDGLT 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L PD V+ TG + + + + + KPF+ +DLV + +L ++
Sbjct: 71 ALKEIKRLYPDTYVIMFTGKGSEEIAVELMKAGASDYILKPFNNQDLVERIESVLKLR 128
>gi|237728165|ref|ZP_04558646.1| two component transcriptional regulator [Citrobacter sp. 30_2]
gi|226910176|gb|EEH96094.1| two component transcriptional regulator [Citrobacter sp. 30_2]
Length = 243
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEM 59
M IL+ +DD + L L + + V +C+ G A + +P +L+L D+++P++
Sbjct: 1 MKPAILVVDDDIAVCTLLQDVLSEHVFTVTACHTGQEALRCIETQPDIALVLLDMMLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+G+ + ++ ++ P L V+ +TG + + + KPF+ R LV V +L
Sbjct: 61 NGLMVLQQVQKMRPGLPVVMLTGLGSESDVVVGLEMGADDYIGKPFNARVLVARVKAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|157375725|ref|YP_001474325.1| two component transcriptional regulator [Shewanella sediminis
HAW-EB3]
gi|157318099|gb|ABV37197.1| two component transcriptional regulator, winged helix family
[Shewanella sediminis HAW-EB3]
Length = 230
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 1 MN----QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
MN ++IL+ ED+ + + L L + +E + G + P L+L D+++
Sbjct: 1 MNREAAKQILIVEDELKLAQLLADYLCDSSFEPHQLHRGDEVLGWLASHPCDLILLDLML 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P +DG+E+ ++ + ++ ++ IT + KPF R++V V
Sbjct: 61 PGLDGLEVCKQIRQ-HSNIPIIMITARVEEIDRLLGLELGADDYICKPFSPREVVARVKA 119
Query: 117 LLTI 120
++
Sbjct: 120 VIRR 123
>gi|153854777|ref|ZP_01996011.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
gi|149752684|gb|EDM62615.1| hypothetical protein DORLON_02009 [Dorea longicatena DSM 13814]
Length = 231
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L + GY+V+ +G A + + LL+ D++MP +DGI
Sbjct: 4 ILVCDDDKEIVEAIEIYLSQEGYKVLKAYDGEEALKLLDKHKVDLLIIDVMMPRLDGIRA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E ++ ++ ++ + A ++KPF+ +L V L
Sbjct: 64 TLKIREKQ-NMPIIILSAKSEDADKILGLNVGADDYMTKPFNPLELTARVKSQLRR 118
>gi|148284174|ref|YP_001248264.1| response regulator PleD [Orientia tsutsugamushi str. Boryong]
gi|146739613|emb|CAM79396.1| PleD-like response regulator, receivor domain/GGDEF domain
[Orientia tsutsugamushi str. Boryong]
Length = 489
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D + R+ L L Y V + NG A + ++L DIVMP MD
Sbjct: 1 MTAAILVVDDLEYNRKLLETKLLTEYYTVYTAANGQEAIKILEAIKIDVVLLDIVMPGMD 60
Query: 61 GIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL + + + V+ IT + + + L+KP L V L+
Sbjct: 61 GFELCKAIKSNQDTAHIPVIIITALSDIEDKVKGLECGADEFLTKPIEDISLFARVKSLV 120
Query: 119 TIK 121
+K
Sbjct: 121 RMK 123
>gi|170722646|ref|YP_001750334.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169760649|gb|ACA73965.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 231
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +L+ +D+ +R+FL +L GY+V+ G+ + L++ D+ +P+
Sbjct: 1 MSQSATLLVIDDEPQIRKFLRISLASQGYKVIEAATGSEGLAQAALAKPDLVVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ R E + VM ++ A D+ ++KPF +++ + + LL
Sbjct: 61 MDGQQVLRELRE-WSAVPVMVLSVRANELQKVDALDSGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|120434874|ref|YP_860560.1| two-component response transcriptional regulator [Gramella forsetii
KT0803]
gi|117577024|emb|CAL65493.1| two-component system response regulator containing sigma-54
interaction domain [Gramella forsetii KT0803]
Length = 388
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/120 (34%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKA--GYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KILL ED+ +RR L K L + YEV +G + V+ E F L+L DI MP+MDG
Sbjct: 3 KILLIEDEASIRRVLNKILTEESKNYEVTDAEDGLQGMELVKNEDFDLILCDIKMPKMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ ++ P++ V+ I+G + ++ +SKP L L+N V L K
Sbjct: 63 VEVLEAVKKIKPEIPVVMISGHGDLDTAVNTMKIGAFDYISKPPDLNRLLNTVRNALDRK 122
>gi|219670061|ref|YP_002460496.1| transcriptional regulator [Desulfitobacterium hafniense DCB-2]
gi|219540321|gb|ACL22060.1| two component transcriptional regulator, winged helix family
[Desulfitobacterium hafniense DCB-2]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D++ ++ L L K GY+V+ +G+ A + E+ L++ DI++P + G+E+
Sbjct: 4 ILVVDDEEPIQELLKFNLEKEGYQVLMAADGSEALRILEEKQPELVVLDIMLPGISGLEV 63
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ + +L V+ +T ++KPF R+
Sbjct: 64 LNQIRKTPKFVELPVIMLTAKGEEIDKVLGLEIGADDYITKPFSPRE 110
>gi|78063277|ref|YP_373185.1| two component heavy metal response transcriptional regulator
[Burkholderia sp. 383]
gi|77971162|gb|ABB12541.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia sp. 383]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +AGY V +G + + E + LL+ D+++P DG
Sbjct: 2 RILIVEDEPKTGAYLRKGLTEAGYVVDWVEDGITGQHQAETEEYDLLVLDVMLPGQDGWT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+F+T V L+KPF +L + +L
Sbjct: 62 LLQNLRRSKS-TPVLFLTARDDVGDRVKGLELGADDYLAKPFDFVELTARIKSILRR 117
>gi|77458313|ref|YP_347818.1| two component transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77382316|gb|ABA73829.1| putative two-component response regulator transcriptional
regulatory protein [Pseudomonas fluorescens Pf0-1]
Length = 246
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD ++R + L K G +G + L++ DI+MP DG+
Sbjct: 6 HILIVDDDREIRELVGNYLKKNGLRTTVVADGRQMRSFLEANTVDLIVLDIMMPGDDGLL 65
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R ++ +T L+KPF R+L+ +N +L
Sbjct: 66 LCRELRSGKHKATPILMLTARNDETDRILGLEMGADDYLTKPFAARELLARINAVLRR 123
>gi|148254647|ref|YP_001239232.1| two component transcriptional regulator [Bradyrhizobium sp. BTAi1]
gi|146406820|gb|ABQ35326.1| two component transcriptional regulator, winged helix family
[Bradyrhizobium sp. BTAi1]
Length = 241
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ EDD ++ R + + + G+E+ N A+ +R L++ D+++P DG
Sbjct: 5 SATLLMVEDDPEISRLVRDFMRREGFEIEVAENAAAMDAVLRRLRPDLIILDLMLPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + RR + D D+ ++ ++ + + KPF R+L+ V LL
Sbjct: 65 LSICRRLRQSD-DIPILMLSAKSDEIDRVVGLELGADDYMVKPFGPRELLARVRALLRR 122
>gi|299069565|emb|CBJ40837.1| Transcriptional regulatory protein, probable baeR protein, response
regulator for mdtABCD and acrD [Ralstonia solanacearum
CMR15]
Length = 233
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L A YE ++G A +VRE L+L D+++P DG+E+
Sbjct: 16 ILIVEDEPKLAALMADYLRAAHYETEWVDDGTRAVQRVRETSPELVLLDLMLPGKDGLEI 75
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R DL ++ +T + KPF R+LV + +L
Sbjct: 76 CREVRA-FSDLPIVMVTARVEEIDRLLGLELGADDYICKPFSPRELVARIKTILRR 130
>gi|253682540|ref|ZP_04863337.1| transcriptional regulatory protein ResD [Clostridium botulinum D
str. 1873]
gi|253562252|gb|EES91704.1| transcriptional regulatory protein ResD [Clostridium botulinum D
str. 1873]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED+ MR+ L K G+ V +G + + +++ DI++P +D
Sbjct: 1 MN--ILIIEDEHRMRKLLKDYFKKEGFCVFEGEDGIKGLEVFKNNNIDIVILDIMIPYLD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + +L + ++ +T ++KPF + LV +V LL
Sbjct: 59 GWKVCKSIRDL-SKVPIIMLTAKGEEEDKLFGYELGADDYVTKPFSPKVLVAKVKALLKR 117
>gi|114328564|ref|YP_745721.1| two-component response regulator [Granulibacter bethesdensis
CGDNIH1]
gi|114316738|gb|ABI62798.1| two-component response regulator [Granulibacter bethesdensis
CGDNIH1]
Length = 253
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD MR +++ L + G+ + +G + + + L+L D+++P G +L
Sbjct: 22 ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFDL 81
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ ++ ++KPF ++L+ V +L
Sbjct: 82 CKALRQ-SSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRR 136
>gi|31074967|gb|AAP42072.1| unknown [Xanthomonas euvesicatoria]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AGY NGA + + L++ D+++P ++G +
Sbjct: 2 KILVVEDEPKTGEYLRQGLTEAGYVSDLVPNGADGLHLALQGEYDLVILDVMLPGLNGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + ++ V+F+T V L KPF +L+ V +L
Sbjct: 62 VLQSLRDRGLEMPVLFLTARDQVEDRVKGLELGADDYLGKPFSFAELLARVRIILRR 118
>gi|309811868|ref|ZP_07705641.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
gi|308434157|gb|EFP58016.1| sensory transduction protein RegX3 [Dermacoccus sp. Ellin185]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D+ + + L +AG +C +G A D VR +++ D+ +P MDG+E+
Sbjct: 12 VLVVDDEPVLSGTVKNYLERAGMSAQTCGDGLVALDLVRATAPDVVVLDLGLPGMDGVEV 71
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D V+ +T A + ++KPF R+LV + LL
Sbjct: 72 CRQLR-TFSDCYVLMLTARADEVDKLIGLSVGADDYMTKPFSPRELVARIQVLLRR 126
>gi|309790025|ref|ZP_07684599.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
gi|308227880|gb|EFO81534.1| two component transcriptional regulator, winged helix family
[Oscillochloris trichoides DG6]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD + R + L +AGY V++ +G + R E LL+ D+++P+ DG
Sbjct: 2 QTILVTDDDRQIVRLVSSYLEQAGYRVLTAYDGEATLRLARTERPDLLVLDLMLPDRDGY 61
Query: 63 ELARRATELDPDL---KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ + DP L ++ +T + KPF+ R++V V +L
Sbjct: 62 SIVQTLRG-DPHLGGMPIIMLTARVEDTDRIVGLELGADDYIGKPFNPREVVARVRAVLR 120
Query: 120 I 120
Sbjct: 121 R 121
>gi|303325765|ref|ZP_07356208.1| transcriptional regulatory protein ZraR [Desulfovibrio sp.
3_1_syn3]
gi|302863681|gb|EFL86612.1| transcriptional regulatory protein ZraR [Desulfovibrio sp.
3_1_syn3]
Length = 466
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 54/114 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+A+DD R L L + GY V +G A R++PF L+L D+ MP+ G+E
Sbjct: 3 TILVADDDATHREVLRTLLEEWGYAVREAVDGEHAVALCRKQPFDLVLMDVRMPKKSGLE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ +P + V+ +T F+ VA ++ L+KP L + +
Sbjct: 63 ALKEIKVHNPAVPVLIMTAFSEVAAAVEAIKSGAYDYLTKPLDFEKLKVVLRNV 116
>gi|302342658|ref|YP_003807187.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
gi|301639271|gb|ADK84593.1| response regulator receiver protein [Desulfarculus baarsii DSM
2075]
Length = 288
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 65/117 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+A+D+D +R L + L G++VV +G A RE+PF L+L+D+ MP +DG++
Sbjct: 17 RILVADDEDALRELLKRFLETKGHQVVLAQDGREALKLFREQPFDLVLSDVRMPGLDGLQ 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L +++P V+ I+G+ + + L+KP + L V++ L++
Sbjct: 77 LLAAVKDINPRTPVVLISGYGDIETVVTALKAGAENFLAKPIRIDMLRRVVSQSLSL 133
>gi|294012877|ref|YP_003546337.1| two-component system phosphate regulon response regulator PhoB
[Sphingobium japonicum UT26S]
gi|292676207|dbj|BAI97725.1| two-component system phosphate regulon response regulator PhoB
[Sphingobium japonicum UT26S]
Length = 233
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++LL EDD + LI + +EVV +G A +E ++L D ++ +
Sbjct: 1 MARARMLLVEDDAALAELLIWHFKREDFEVVHTVDGEEALLLAQENMPDIVLLDWMVESL 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR ++ ++ ++ +T ++KPF R+LV V +
Sbjct: 61 SGIEVCRRLRRMNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|239989346|ref|ZP_04710010.1| putative two-component system response regulator [Streptomyces
roseosporus NRRL 11379]
Length = 256
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ EDD +RR + AL + GY V +G S + R LL+ D+++P +DGI L
Sbjct: 27 VLVVEDDATIRRAVQLALERYGYRVDVAADGLSGLEAFRAGAHDLLILDVMLPALDGIGL 86
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E P + V+ ++ + KP +V + LL
Sbjct: 87 CHRIREESP-VPVLMMSARGDALDVVAGLEAGADDYVIKPVDTAVMVARIRALLRR 141
>gi|255305488|ref|ZP_05349660.1| putative lantibiotic resistance two-component response regulator
[Clostridium difficile ATCC 43255]
Length = 230
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +D+ D+ L L G+EV+ +G + + + ++ L++ DI+MP+MD
Sbjct: 1 MS-KILIIDDEIDLVMLLEDELKAKGHEVLIAYDGQAGIE-LSKQEPDLIILDIMMPKMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + + D V+F++ + ++KPF LR+L+ + L
Sbjct: 59 GFEVCQAIRD-DVLCPVIFLSAKQSETDKIKGLTFGGDDYVTKPFGLRELMARIEANLRR 117
Query: 121 K 121
+
Sbjct: 118 E 118
>gi|171740938|gb|ACB54965.1| PhoP [Pseudomonas fluorescens]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ ED+ +R L L +G+ V + N A +VRE L + D+ +P + G+E
Sbjct: 2 KLLVVEDEALLRHHLQTRLSDSGHVVQAVANAEEALYQVREFNHDLAVIDLGLPGISGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L RR D ++ +T + A + KPF +L +N LL +
Sbjct: 62 LIRRLRSQDKTFPILILTARGNWQDKVEGLAAGADDYVVKPFQFEELEARLNALLRRSS 120
>gi|167577808|ref|ZP_02370682.1| response regulator [Burkholderia thailandensis TXDOH]
gi|167615936|ref|ZP_02384571.1| response regulator [Burkholderia thailandensis Bt4]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + L L AGYEV + NG + +P+ +L D+ +P MDG+
Sbjct: 2 RVLVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSLPGMDGLT 61
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E+ D V+ +T + L KPF L+++ + L+
Sbjct: 62 LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKR 119
>gi|89095495|ref|ZP_01168403.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
gi|89080242|gb|EAR59506.1| DNA-binding response regulator [Oceanospirillum sp. MED92]
Length = 241
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++ + + L K GY V NG + F L+L D ++PE+DG+E
Sbjct: 18 RILLIEDDREVSNSIAEILSKKGYHTVQSYNGREGLVTAINQQFHLILLDKMLPELDGLE 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + D V+ ++ A D + L KPF++ +L+ + LL
Sbjct: 78 LLHRLRK-YRDTPVVMLSACGAEQDRIDGFSSGADDYLPKPFNMTELLFRIEALLRR 133
>gi|329925042|ref|ZP_08279986.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
gi|328940161|gb|EGG36493.1| transcriptional regulatory protein WalR [Paenibacillus sp. HGF5]
Length = 243
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L K GYEV+ +G SA + + L+L D+++P D
Sbjct: 1 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + + ++ +T ++KPF R+++ V L
Sbjct: 61 GMDVCREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRR 120
Query: 121 K 121
+
Sbjct: 121 Q 121
>gi|325267975|ref|ZP_08134623.1| two component response regulator [Kingella denitrificans ATCC
33394]
gi|324980578|gb|EGC16242.1| two component response regulator [Kingella denitrificans ATCC
33394]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +ILL EDD + + ++ L A Y V +G +A + + + L+L D+ +P+ D
Sbjct: 11 MSMRILLVEDDGMIAQAVMMGLKHANYAVDWVQDGLAAQTALAGQNYDLVLLDLGLPKQD 70
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + R + V+ +T + + KPF + +L+ + +L
Sbjct: 71 GLSMLRHIRQNRNLTPVLIVTAQDDLDSRLSGLDGGADDYVVKPFDMAELLARIRAVLRR 130
Query: 121 KN 122
+
Sbjct: 131 HH 132
>gi|294501956|ref|YP_003565656.1| two-component response regulator [Bacillus megaterium QM B1551]
gi|294351893|gb|ADE72222.1| two-component response regulator [Bacillus megaterium QM B1551]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +D+ + +FL L G+++ + +G + +E + + D+++P MDG E
Sbjct: 8 KVLLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVMLPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ D+ V+ +T V + KPF +L+ + I+N
Sbjct: 68 VCRLLKKMG-DIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQA--RIRN 123
>gi|261880781|ref|ZP_06007208.1| two component system sensor histidine kinase/response regulator
[Prevotella bergensis DSM 17361]
gi|270332558|gb|EFA43344.1| two component system sensor histidine kinase/response regulator
[Prevotella bergensis DSM 17361]
Length = 1324
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED++D+ L K K V+ +G D VR+E L+++D++MP M G E
Sbjct: 1076 TILLVEDNEDLLMSLRKLFAKT-CRVLLARDGREGLDLVRKELPDLVVSDVMMPRMSGTE 1134
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+ +T +V + KPF + LV N L+ +
Sbjct: 1135 MCKHIKDDLAVSHIPVVLLTAMGSVENTIAGLKCGADDYIPKPFDSKLLVIRCNNLIRSR 1194
Query: 122 N 122
N
Sbjct: 1195 N 1195
>gi|146338495|ref|YP_001203543.1| OmpR family two-component response regulator [Bradyrhizobium sp.
ORS278]
gi|146191301|emb|CAL75306.1| two-component response transcriptional regulator (OmpR family)
[Bradyrhizobium sp. ORS278]
Length = 235
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEMDG 61
+L+ EDD ++R L L + G+ V +G +A D+ R L++ DI++P DG
Sbjct: 6 HLLIIEDDIEIRSLLRDHLAREGFRVD-VGDGGAALDRFRNTFGDPDLVVLDIMLPGEDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + RR + ++ +T L KPF R+LV + +L
Sbjct: 65 LSICRRLRAA-SRVPILMLTAKGDEIDRIVGLEMGADDYLPKPFSPRELVARIRAILRR 122
>gi|108758444|ref|YP_631647.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
1622]
gi|108462324|gb|ABF87509.1| DNA-binding heavy metal response regulator [Myxococcus xanthus DK
1622]
Length = 226
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED++ M L + LG+ G+ V +C A D+ E + ++ D +P MDG+
Sbjct: 2 RLLLVEDEERMANLLRRGLGEEGHLVDTCRTAEDALDQAGEVAYDAIILDWALPGMDGVA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR E V+ +T V L KPF +L+ + L
Sbjct: 62 LLRRWRERGLMTPVLMLTARGTVGERVTGLRAGADDYLVKPFAFEELLARLEALHRR 118
>gi|323700355|ref|ZP_08112267.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio sp. ND132]
gi|323460287|gb|EGB16152.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio desulfuricans ND132]
Length = 461
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +KIL+ +DD + L++AL GY V + + K F L+L DI +P M
Sbjct: 1 MAEKILVVDDDRAFQGMLVEALADKGYVVETAASAEEGIKKAGAGRFDLILHDIQLPGMS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E R E+ P + V+ +TG+ + + KPF LR++ V R +
Sbjct: 61 GLEALRHLAEVSPGVDVIVMTGYGSKETGVTAMQQGAYDYFEKPFSLREMEVVVGRAMER 120
Query: 121 K 121
+
Sbjct: 121 R 121
>gi|283851819|ref|ZP_06369096.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio sp. FW1012B]
gi|283572735|gb|EFC20718.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio sp. FW1012B]
Length = 453
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL +DD + L L AGY+VV+ +GA A + + + P L+++DI MP MDG+
Sbjct: 9 KTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRMPGMDGM 68
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
L L ++F+T ++ ++ L+KPF ++L+ V +
Sbjct: 69 RLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPFDGQELLTRVTEV 123
>gi|295676005|ref|YP_003604529.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
gi|295435848|gb|ADG15018.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1002]
Length = 232
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L ED+ +RRF+ AL G V G + L++ D+ +P+ DG
Sbjct: 5 SITVVLIEDEKQIRRFVRTALEGEGIAVYDAETGKQGLVEAATRKPDLVIVDLGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ R +L V+ ++ + + L+KPF + +L+ + L +
Sbjct: 65 LDVIRELRG-WSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRR 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|182419686|ref|ZP_02950927.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237665577|ref|ZP_04525565.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
gi|182376423|gb|EDT74004.1| transcriptional regulatory protein ResD [Clostridium butyricum
5521]
gi|237658524|gb|EEP56076.1| transcriptional regulatory protein ResD [Clostridium butyricum E4
str. BoNT E BL5262]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D++ + + L G +S +G A +K ++E L++ D++MP++ G
Sbjct: 2 KKILICDDNEAVHETIGTYLKNDGMIYISAFDGEEALEKFKKENVDLVILDLMMPKIFGT 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E+ + ++ ++ ++ +T + KPF R++V + + N
Sbjct: 62 EVCKEIRKI-SEVPIIMLTAKGEEIDKIIGLEIGADDYIVKPFSPREVVARIKTIFRRVN 120
>gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas
syringae pv. morsprunorum str. M302280PT]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D L AL +AGY V+ +G SA +++ L+L D +MP MDG E
Sbjct: 13 ILIVDDTPDNLALLSDALDEAGYMVMVALDGISALLRIQRRRPDLILLDAMMPGMDGFET 72
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
R+ + ++ V+F+T + ++KP +++ V L
Sbjct: 73 CRQIKQQPDASNIPVLFMTALTDSEHVVEGFEAGAIDYVTKPIQCNEMIARVASHLR 129
>gi|313895961|ref|ZP_07829515.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
oral taxon 137 str. F0430]
gi|312975386|gb|EFR40847.1| putative transcriptional regulatory protein ResD [Selenomonas sp.
oral taxon 137 str. F0430]
Length = 235
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL EDD D+ L +G+ V ++G + L+L D+++P D
Sbjct: 1 MT-KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGAD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + D+ ++ ++ + + KPF +L V +T
Sbjct: 60 GFAICRAVRKEL-DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITR 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|297192903|ref|ZP_06910301.1| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
gi|297151548|gb|EDY66528.2| two-component system response regulator [Streptomyces
pristinaespiralis ATCC 25486]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + +L EDDD +R AL + G+ V + +G + R + + L D+++P +
Sbjct: 1 MAETHVLFVEDDDVIREATQLALERDGFAVTAVPDGLLGLEAFRADRPDIALLDVMVPGL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 61 DGVSLCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|291531882|emb|CBK97467.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium siraeum
70/3]
Length = 244
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP--FSLLLTDIVMPEMD 60
++IL+ ED+D +R F++ L ++GY+V+ +N A A D + L DI+MP MD
Sbjct: 2 KRILVCEDEDAIRDFVVINLKRSGYDVIDVSNAAQAMDAYVHYGGLIDVALLDIMMPGMD 61
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL R + + ++ ++ + ++KPF +LV V+ +
Sbjct: 62 GSELCRWLRQKSDTMGIIMLSAKSQEVDKIRCLTQGADDYVTKPFSPSELVARVDAVYRR 121
>gi|291516107|emb|CBK65317.1| Signal transduction histidine kinase [Alistipes shahii WAL 8301]
Length = 1357
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M +++ +DD ++ FL+K L Y V+S ++G+ A + +R L+++DI+M +
Sbjct: 1099 MTVRHTVMVVDDDSNILDFLVKVL-GNDYFVISTDSGSQALNLLRNNDPDLVVSDIMMAD 1157
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+DGIEL RR + V+ +T ++ + + KPF L ++
Sbjct: 1158 IDGIELCRRIKNDISTSHIPVILLTARTGISSKIEGFECGADAYIEKPFSPDQLKAQIFS 1217
Query: 117 LLTIKN 122
LL ++
Sbjct: 1218 LLRTRD 1223
>gi|238764294|ref|ZP_04625245.1| Nitrogen regulation protein NR(I) [Yersinia kristensenii ATCC
33638]
gi|238697445|gb|EEP90211.1| Nitrogen regulation protein NR(I) [Yersinia kristensenii ATCC
33638]
Length = 470
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG V+ ++G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVTFDSGNQVLDALATQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|227499853|ref|ZP_03929946.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
gi|227217962|gb|EEI83235.1| DNA-binding response regulator [Anaerococcus tetradius ATCC 35098]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ KIL+ ED+ + + L K Y V +G A + +E L++ D+++P++
Sbjct: 1 MNEIKILIVEDEKTISDIVKNYLIKDNYVVFQAYDGKEALEIFDKEEIDLVILDLMLPKL 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G E+ + + V+ + + ++KPF ++LV V +L
Sbjct: 61 SGEEVLKNIRNK-SKVPVIITSAKVEEFDRINGLRLGADDYVTKPFSNKELVERVKAVLR 119
Query: 120 I 120
Sbjct: 120 R 120
>gi|291326185|ref|ZP_06123519.2| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
gi|291315319|gb|EFE55772.1| DNA-binding response regulator BaeS [Providencia rettgeri DSM 1131]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L L A Y+ G D V++ +L+L D+++P MDGI +
Sbjct: 11 ILVVEDEPKLGQLLFDYLQAANYQPALIARGDQVIDYVKQHQPALILLDLMLPGMDGISV 70
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + D+ ++ +T + KPF R++V V +L
Sbjct: 71 CRELRK-FSDVPIIMVTAKTEEIDRLLGLEIGADDYICKPFSPREVVARVKTILRR 125
>gi|209528024|ref|ZP_03276505.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
gi|209491543|gb|EDZ91917.1| two component transcriptional regulator, winged helix family
[Arthrospira maxima CS-328]
Length = 254
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +DD + + L AGYEV +G + L++ D+++P++DG
Sbjct: 3 RILVIDDDPAIAELVAINLEMAGYEVTLAPDGIVGQALALQLLPDLIILDLMLPKVDGFT 62
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E D+ V+ +T + L+KPF L +++ V LL
Sbjct: 63 VCQRLRRDERTGDIPVLMLTALGQTQDKVEGFNAGADDYLTKPFELEEMLARVRALLRR 121
>gi|222056251|ref|YP_002538613.1| two component heavy metal response transcriptional regulator,
winged helix family [Geobacter sp. FRC-32]
gi|221565540|gb|ACM21512.1| two component heavy metal response transcriptional regulator,
winged helix family [Geobacter sp. FRC-32]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ F+ K L ++GY N G D + +++ D+++P +DG +
Sbjct: 2 RILVIEDEVKTAAFIRKGLRESGYTADVANEGFEGLDLALTREYDIIILDVMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R +L D ++F+T A+ L KPF +L+ + +L
Sbjct: 62 IISRIRKLKKDTPIIFLTARDAIQDRIKGLELGADDYLVKPFAFSELLVRIRTILRR 118
>gi|328544619|ref|YP_004304728.1| chemotaxis protein CheY [polymorphum gilvum SL003B-26A1]
gi|326414361|gb|ADZ71424.1| CheY-like response regulator [Polymorphum gilvum SL003B-26A1]
Length = 241
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ IL+ +D D+R L + L K G + A A ++ L++ D++MP
Sbjct: 1 MNEPSPHILIVDDHRDIRETLARYLVKNGLRASVAESAAHARKALKAAVIDLVVLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+ L R + + V+ +T A ++KPF+ R+L+ + +
Sbjct: 61 GEDGLSLCRHLVDNGA-IPVILLTAMAEETDRIIGLEIGADDYVTKPFNPRELLARIKAV 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|309700427|emb|CBI99718.1| DNA-binding response regulator transcriptional regulator
[Escherichia coli ETEC H10407]
Length = 226
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G +
Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R V+ +T + L KPF +L+ V LL N
Sbjct: 62 IIRMLRTAGKGTPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120
>gi|288959268|ref|YP_003449609.1| two-component response regulator, modulated diguanylate cyclase
[Azospirillum sp. B510]
gi|288911576|dbj|BAI73065.1| two-component response regulator, modulated diguanylate cyclase
[Azospirillum sp. B510]
Length = 310
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D L + L Y++ +G A + V+ L+L DI+MP MDG E
Sbjct: 7 KILVVDDIPSNVHVLSRILKD-DYDIYFATDGERALELVQSRMPDLVLLDIMMPGMDGFE 65
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+ RR D+ V+FI+ V ++KP + V L
Sbjct: 66 VCRRIKADPATHDIPVIFISAKGEVEDETRGLEVGAIDFITKPISPPIVRARVRNHL 122
>gi|169836123|ref|ZP_02869311.1| two-component response regulator [candidate division TM7
single-cell isolate TM7a]
Length = 520
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D+ ++ ++ L GY+ + N A +E + D+++P+ +G E
Sbjct: 11 ILIVDDEQEILNMVVSILADGGYKNTRTARNVKEALKCAKEVEPDFAILDVMLPDGNGFE 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + + + D ++F+T + KPF ++L+ + +L
Sbjct: 71 LLEKLRK-NSDYPILFLTARGEDEDKFKGFGLGADDYIVKPFLPKELLFRITAILRR 126
>gi|93006920|ref|YP_581357.1| CheA signal transduction histidine kinases [Psychrobacter
cryohalolentis K5]
gi|92394598|gb|ABE75873.1| CheA signal transduction histidine kinases [Psychrobacter
cryohalolentis K5]
Length = 2301
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 2/122 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N IL+ +D +R+ + L + G+ VV +G A + ++E L+L DI MP MDG
Sbjct: 2173 NTTILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDG 2232
Query: 62 IELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+A + L ++ IT + + KPF L++++ LL
Sbjct: 2233 FEVATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQENQLLDKIQSLLD 2292
Query: 120 IK 121
K
Sbjct: 2293 EK 2294
>gi|134291674|ref|YP_001115443.1| two component transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|134134863|gb|ABO59188.1| two component transcriptional regulator, winged helix family
[Burkholderia vietnamiensis G4]
Length = 220
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + + L +AG V ++G A + P+ L++ D+ +P M G+E
Sbjct: 2 RVLLVEDDKLIGSGVEDGLSEAGMTVDWAHDGRHAQLALETTPYDLVVLDLGLPRMSGVE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+ +T VA + L KPF L +LV L+
Sbjct: 62 LLAWLRKRRDHTPVLVMTARDTVADRVSGLSAGADDYLGKPFDLTELVARCRALVRR 118
>gi|329924862|ref|ZP_08279811.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
HGF5]
gi|328940359|gb|EGG36686.1| subtilin biosynthesis regulatory protein SpaR [Paenibacillus sp.
HGF5]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ D+R+ L GY V++ N A KV + L+L DI MPE +G+
Sbjct: 2 HKILIVDDEADLRKLLTDYFEINGYFVMTAKNSREAMQKVEQG-PDLVLLDINMPEENGL 60
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R ++F+T A + KPF +R+L V L +
Sbjct: 61 EICERIRGFVS-CPILFLTARIEDADKIAGFRAGGDDYILKPFSIRELGARVEAHLRRE 118
>gi|317500294|ref|ZP_07958520.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
8_1_57FAA]
gi|316898302|gb|EFV20347.1| transcriptional regulatory protein CutR [Lachnospiraceae bacterium
8_1_57FAA]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ ED+ + + ++L + Y V C +G +A + ++ F L++ D+ +P+ DG+
Sbjct: 2 HILVVEDERILCETIARSLKRLAYSVDCCYDGITAMQMLADDNFDLVVLDLNLPDADGMT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ R + D D KV+ ++ + V+ D L+KPFHL +L + L
Sbjct: 62 VLRTLRKTDRDTKVLILSARSEVSDKVDGLDAGANDYLAKPFHLEELAARIRSL 115
>gi|288959451|ref|YP_003449792.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
gi|288911759|dbj|BAI73248.1| DNA-binding two-component response regulator [Azospirillum sp.
B510]
Length = 240
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++I + ED+ D+RR + L GYEV +G A +R + L L D+ +P+MDG
Sbjct: 4 KKRIYVIEDEADIRRLVADILEGYGYEVSGWASGREALAAIRRQAPDLCLVDLGLPDMDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ L R E D V+ ++G + + KPF R+LV VN + +
Sbjct: 64 LTLVRELWE-DVRFGVIILSGRGGTSDRVLGLELGADDYVVKPFEPRELVARVNSAIRRR 122
>gi|255318782|ref|ZP_05360008.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
gi|262378954|ref|ZP_06072111.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
gi|255304038|gb|EET83229.1| DNA-binding response regulator [Acinetobacter radioresistens SK82]
gi|262300239|gb|EEY88151.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter radioresistens SH164]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ EDD + I L + V NNG ++ + F ++L D+ +P MD
Sbjct: 1 MN-KILIIEDDFMIAESTITLLQYQQFAVQWVNNGIDGLKLLKTQEFDIVLLDLGLPLMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ ++ + P L V+ I+ + D L KP+ +L+ + LL
Sbjct: 60 GMQVLKQIRQQKPALPVLIISARDQLHNRVDGLNQGADDYLVKPYEFDELLARIQALLRR 119
>gi|222147052|ref|YP_002548009.1| two component response regulator [Agrobacterium vitis S4]
gi|221734042|gb|ACM35005.1| two component response regulator [Agrobacterium vitis S4]
Length = 240
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q I L +DD ++ + AL GY+V + +GASA D + P L + DI MP MDG+
Sbjct: 2 QTIALVDDDRNILTSVSIALEAEGYKVETYTDGASALDGLLARPPQLAIFDIKMPRMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
EL RR + D+ V+F+T ++KPF R LV V +L
Sbjct: 62 ELLRRLRQK-SDIPVIFLTSKDEEIDELFGLKMGADDFITKPFSQRLLVERVKAILRR 118
>gi|215433453|gb|ACJ66692.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
fulvus HW-1]
Length = 471
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ Q+IL+ +D+D+ RR + L + GYEV NGA A ++ E +++LTD+ MP+M
Sbjct: 1 MSPQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L + A E D + +T FA+V ++ L KP ++ + ++L
Sbjct: 61 DGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLIKPLDADQVLVTLGKVLE 120
Query: 120 IKN 122
++
Sbjct: 121 KRS 123
>gi|209885699|ref|YP_002289556.1| transcriptional regulatory protein QseB [Oligotropha
carboxidovorans OM5]
gi|209873895|gb|ACI93691.1| transcriptional regulatory protein QseB [Oligotropha
carboxidovorans OM5]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 2 RLLVVEDDPDLNRQLTTALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 62 VLESWRRNKRIMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 118
>gi|170016613|ref|YP_001727532.1| response regulator [Leuconostoc citreum KM20]
gi|169803470|gb|ACA82088.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Leuconostoc citreum
KM20]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE V +G A K+ P L++ D++MP M+G+
Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPVMAADGKEAISKLNTNPDIGLMILDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVVKIVRK-DSRVPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|167951072|ref|ZP_02538146.1| two-components system response regulator [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 220
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ D+ L L GY V + + V+E+ + ++ D+ +P+MDG+E+
Sbjct: 3 ILVIEDNPDLVANLYDFLEPRGYVVDAAGSARGGLHFVQEKVYDAIILDLTLPDMDGLEV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R + D V+ +T + + L KPF +++L + L+
Sbjct: 63 CKRLRDSGCDTPVLMLTARDTLDDKLEGFGSGADDYLVKPFAMQELDARLKALVRR 118
>gi|163751031|ref|ZP_02158262.1| DNA-binding response regulator [Shewanella benthica KT99]
gi|161329192|gb|EDQ00191.1| DNA-binding response regulator [Shewanella benthica KT99]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD +++ L + L A + + ++G + E + + DI +P+++GIE
Sbjct: 2 RILLVEDDIELQNNLKQHLLDANFTLDVASDGEDGLFQGSEYIYDAAIIDIGLPKLNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + E + D ++ +T + + L+KPFH +L+ +N L+
Sbjct: 62 LITKLREQEIDFPILILTARDSWQDKVEGLDAGADDYLTKPFHPEELIARLNALIRR 118
>gi|325285244|ref|YP_004261034.1| putative two component, sigma54 specific, transcriptional regulator
[Cellulophaga lytica DSM 7489]
gi|324320698|gb|ADY28163.1| putative two component, sigma54 specific, transcriptional regulator
[Cellulophaga lytica DSM 7489]
Length = 387
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ KIL+ ED+ +RR L+K L + Y V +G D +++ + L+L DI MP+
Sbjct: 1 MS-KILVIEDEAAIRRVLVKILSEESDTYNVEEAEDGLKGIDAIKKNDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ A +L P+L + I+G + ++ +SKP L L+ V L
Sbjct: 60 MDGVEVLEAARKLKPELAFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119
Query: 119 TIKN 122
KN
Sbjct: 120 DRKN 123
>gi|315651418|ref|ZP_07904443.1| response regulator [Eubacterium saburreum DSM 3986]
gi|315486377|gb|EFU76734.1| response regulator [Eubacterium saburreum DSM 3986]
Length = 235
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L GY V NN + +E L + DI+MP MDG+E+
Sbjct: 6 ILVVDDEKEIADLVEIYLVSDGYTVFKANNAEDGLAIIEKEDIHLAILDIMMPGMDGLEM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + ++ ++ +A ++KPF+ +L V L
Sbjct: 66 CKKIRESY-NFPIILLSAKSADIDKILGLGTGADDYVTKPFNTLELTARVKSQLRR 120
>gi|297155496|gb|ADI05208.1| two-component system response regulator [Streptomyces
bingchenggensis BCW-1]
Length = 235
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 50/107 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLAEDD +R L +AL GY V + +G A E +++ D++MP +DG++
Sbjct: 6 TVLLAEDDRAIRHALERALTLEGYRVTAVPDGIEAVAAAHRERPDVIVLDVMMPGLDGLQ 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
+ R ++ +T A + ++KPF + ++
Sbjct: 66 VCRVLRAEGDRTPILILTARVETADRIEGLDAGADDYVAKPFDVDEV 112
>gi|163791368|ref|ZP_02185779.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
gi|159873338|gb|EDP67431.1| hypothetical protein CAT7_10460 [Carnobacterium sp. AT7]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+AED+ ++ R + L GY V S ++G AY+ + ++ DI+MP++ G+E
Sbjct: 2 RLLIAEDEAELARAIQVILENEGYTVDSVHDGKDAYEYAVLAEYDGIILDIMMPKLSGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ +T +A+ D L+KPF + +L+ + + K
Sbjct: 62 VLEKLRSEGNQTPILLLTAKSAIENRIDGLDLGADDYLTKPFAMGELLARIRAMTRRK 119
>gi|86741974|ref|YP_482374.1| two component transcriptional regulator [Frankia sp. CcI3]
gi|86568836|gb|ABD12645.1| two component transcriptional regulator, winged helix family
[Frankia sp. CcI3]
Length = 272
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L ED+ + R + L G+EV + +G A + P L++ D+ +P+MD
Sbjct: 23 MT-RLLFVEDEPQLLRAMRITLRARGFEVRTALDGRHALSEAASCPPDLVILDLGLPDMD 81
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+ + + ++ ++G A+ + ++KPF + +L+ V +
Sbjct: 82 GVEVIQGLRA-WTGVPIIVLSGRASGHDKVAALDAGADDYVTKPFSIDELLARVRAVTRR 140
>gi|60680360|ref|YP_210504.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis NCTC 9343]
gi|60491794|emb|CAH06552.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis NCTC 9343]
Length = 1361
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G E L+++D++MP DG
Sbjct: 1112 KKTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDG 1170
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229
>gi|86136783|ref|ZP_01055361.1| response regulator [Roseobacter sp. MED193]
gi|85826107|gb|EAQ46304.1| response regulator [Roseobacter sp. MED193]
Length = 410
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 5/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D RR L+ +L K G++VV +G +A + R++P L+L+D +MP M+G+E
Sbjct: 7 RVLVVDDSRLQRRILVASLQKWGFDVVEAESGEAAMEICRKDPPDLILSDWMMPGMNGLE 66
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV---NRLL 118
+ E D + +T + + L+KP +L + R+L
Sbjct: 67 FCQAFREQSRDNYAYFILLTSKSEKNEVAEGLDAGADDFLTKPVSSDELRARISAGERIL 126
Query: 119 TIK 121
++
Sbjct: 127 KMQ 129
>gi|53718414|ref|YP_107400.1| response regulator transcription regulatory protein [Burkholderia
pseudomallei K96243]
gi|126452265|ref|YP_001065094.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|254261284|ref|ZP_04952338.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
gi|52208828|emb|CAH34767.1| response regulator transcription regulatory protein [Burkholderia
pseudomallei K96243]
gi|126225907|gb|ABN89447.1| DNA-binding response regulator [Burkholderia pseudomallei 1106a]
gi|254219973|gb|EET09357.1| DNA-binding response regulator [Burkholderia pseudomallei 1710a]
Length = 247
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E
Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 118
>gi|309791916|ref|ZP_07686398.1| PAS sensor protein [Oscillochloris trichoides DG6]
gi|308226034|gb|EFO79780.1| PAS sensor protein [Oscillochloris trichoides DG6]
Length = 484
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 46/120 (38%), Gaps = 3/120 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M++ ILL +D+ + + L Y++ + NG D + L+L D++MP M
Sbjct: 1 MDRSTILLIDDNPQIHSIISDLLRPLDYQIFAALNGQEGLDLAHQHRPDLVLLDVMMPGM 60
Query: 60 DGIELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG + + + V+ IT + KPF +L V +
Sbjct: 61 DGFAVCQALRSDAQLSKVPVIMITALDDRGSRLRGFESGADDFIGKPFDTIELRARVATV 120
>gi|260886778|ref|ZP_05898041.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC
35185]
gi|330839408|ref|YP_004413988.1| two component transcriptional regulator, winged helix family
[Selenomonas sputigena ATCC 35185]
gi|260863377|gb|EEX77877.1| DNA-binding response regulator DltR [Selenomonas sputigena ATCC
35185]
gi|329747172|gb|AEC00529.1| two component transcriptional regulator, winged helix family
[Selenomonas sputigena ATCC 35185]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLAED+ DM L+ L +GYEV + +G +A + ++ ++ D++MP MDG+
Sbjct: 2 KLLLAEDEKDMAAALVAVLEHSGYEVDAVRDGRAALALAHKGTYACMVFDVMMPVMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T A V + L KPF + +L+ + L
Sbjct: 62 ALKELRAAGDTTPVLLLTAKAEVGDRIEGLDAGADDYLPKPFAMGELLARLRSLTRR 118
>gi|255324934|ref|ZP_05366042.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
tuberculostearicum SK141]
gi|255297994|gb|EET77303.1| KDP operon transcriptional regulatory protein KdpE [Corynebacterium
tuberculostearicum SK141]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
I++ +DD + L GYEV S + GA V + +++ D+ +P+MDG
Sbjct: 5 KATIVIVDDDPRLLTTLSINFKARGYEVYSASTGAEGLQVVSQHQPDVVILDMGLPDMDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
E+ + V+ +T + + + ++KPF + +L+ V L
Sbjct: 65 REVLDGIRG-WSAIPVLILTARSDPLFSASALDRGADDYVTKPFSMEELLARVRVALR 121
>gi|258517410|ref|YP_003193632.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
gi|257781115|gb|ACV65009.1| two component transcriptional regulator, winged helix family
[Desulfotomaculum acetoxidans DSM 771]
Length = 384
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD + ++ L GY+V + G A + V++ ++ D ++P++ G++L
Sbjct: 166 ILIVDDDRLITDYISMGLIYEGYQVYTAYYGKDALELVKKVRIDAVILDWMLPDIQGLDL 225
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR EL + ++ +TG + + KPF+ +L+ + L +
Sbjct: 226 CRRLRELINPV-IIMVTGKDEFIDRVNGLRAGADDYMVKPFNFAELLARLEAQLRRQ 281
>gi|220927704|ref|YP_002504613.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219998032|gb|ACL74633.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ +R + K G+EV +G A RE+ F +++ D++MPE+DG
Sbjct: 3 KILIVDDEAGIRNIIKKYAVFEGHEVEEAADGMEAIQVCREKEFDIIVMDVMMPELDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ ++ + KPF ++L+ +N ++
Sbjct: 63 ACKEIKK-FSKAPVLMLSARGEEYDKIHGFELGIDDYVVKPFSPKELMMRINVIVKR 118
>gi|86140347|ref|ZP_01058906.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Leeuwenhoekiella blandensis MED217]
gi|85832289|gb|EAQ50738.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Leeuwenhoekiella blandensis MED217]
Length = 387
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ KIL+ ED+ +RR L+K L + Y+V +G + +K+++ + L+L DI MP+
Sbjct: 1 MS-KILIIEDEAAIRRVLVKILTEENKAYQVEEAEDGLAGMEKIKDNDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ ++ P++ ++ I+G + ++ +SKP L L+N V L
Sbjct: 60 MDGVEVLEATKKVKPEIPMVMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLNTVRNAL 119
Query: 119 TIKN 122
KN
Sbjct: 120 DRKN 123
>gi|238783827|ref|ZP_04627845.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
43970]
gi|238715214|gb|EEQ07208.1| Transcriptional regulatory protein baeR [Yersinia bercovieri ATCC
43970]
Length = 239
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + + L+ L AGY NGA VR+ P +++L D+++P DGI +
Sbjct: 14 VLIVEDEPKLGQLLVDYLQAAGYSTQWITNGAEVVAAVRQAPPAMILLDLMLPGSDGITI 73
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ +M +T + KP+ R++V V +L
Sbjct: 74 CREIR-RFSDVPIMMVTAKTEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 128
>gi|325279188|ref|YP_004251730.1| response regulator receiver sensor signal transduction histidine
kinase [Odoribacter splanchnicus DSM 20712]
gi|324310997|gb|ADY31550.1| response regulator receiver sensor signal transduction histidine
kinase [Odoribacter splanchnicus DSM 20712]
Length = 374
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +D L LGK GY ++ NNG A + +R E L+L D++MP MDG E
Sbjct: 9 KLLVVDDVQTNVLLLKALLGKEGYGILVANNGQEALEVIRNENPDLILLDVMMPGMDGFE 68
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+A R E ++ ++F+T + +SKPF +L+ + L++
Sbjct: 69 VAERLKSEEFRCEIPIIFLTALDDTQSIVNGFKLGVGDFISKPFRKEELMVRIKHQLSL 127
>gi|307300861|ref|ZP_07580636.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
gi|307320002|ref|ZP_07599424.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306894379|gb|EFN25143.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti AK83]
gi|306904395|gb|EFN34980.1| two component transcriptional regulator, winged helix family
[Sinorhizobium meliloti BL225C]
Length = 230
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++IL+ +D+ ++RFL AL AGYEV+ NGA A +++ D+ +P+M
Sbjct: 1 MTAERILVVDDEPQIQRFLRPALAAAGYEVIEAANGAQALKAAVTAAPDVVILDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG ++ + ++ ++ + + + KPF + +L + L
Sbjct: 61 DGKDVVANIRA-WSQVPIIILSARDRESEKIAALDLGADDYIEKPFGIGELTARIRAALR 119
Query: 120 IK 121
+
Sbjct: 120 HR 121
>gi|228995903|ref|ZP_04155561.1| Two-component response regulator [Bacillus mycoides Rock3-17]
gi|229003520|ref|ZP_04161338.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757758|gb|EEM06985.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228763875|gb|EEM12764.1| Two-component response regulator [Bacillus mycoides Rock3-17]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + + L +EV + NG + + ++L D+++P +DG E
Sbjct: 2 RLLVVEDNAPLLESITQILCDE-FEVDTAMNGEDGLFLALQNIYDVILLDVMLPVIDGFE 60
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + V+F+T ++ L KPF +L + LL
Sbjct: 61 VIQRIRNDKIETPVLFLTAKDSLEDRVKGLDFGGDDYLIKPFQAPELKARIRALLRR 117
>gi|229119055|ref|ZP_04248396.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228664407|gb|EEL19907.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
Length = 229
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ +R F+ + AG+ V+ + G A D + +++ D+++P +D
Sbjct: 1 MT-TILVLDDEITIRSFITLKMKHAGFNVLETDTGEKALDLLENHNVDIIILDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ ++ + + + ++ +T + KPF + +LV V LL
Sbjct: 60 GFQVCKQIRKNNEKIGIIMLTSRVQGKDQVHGLTIGADDYIKKPFSINELVARVQSLLRR 119
>gi|224535281|ref|ZP_03675820.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM
14838]
gi|224523089|gb|EEF92194.1| hypothetical protein BACCELL_00142 [Bacteroides cellulosilyticus DSM
14838]
Length = 1328
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 1 MNQK------ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDI 54
M ++ +LL ED++D+ +++ L Y ++ NG A + +E +L+++DI
Sbjct: 1069 MAEREPGSSSLLLVEDNEDLLSSMVRLLQGR-YHILQARNGVEALAVLEKEEVNLIVSDI 1127
Query: 55 VMPEMDGIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
+MPEMDGIEL RR E + V+ +T + KP L L+
Sbjct: 1128 MMPEMDGIELCRRIKEKFETCHIPVILLTAKITDEDQVMGYESGADGYICKPLRLSVLLA 1187
Query: 113 EVNRLLTIKN 122
+++ LL N
Sbjct: 1188 KIDNLLKKSN 1197
>gi|168752198|ref|ZP_02777220.1| heavy metal response regulator [Escherichia coli O157:H7 str.
EC4113]
gi|168757600|ref|ZP_02782607.1| heavy metal response regulator [Escherichia coli O157:H7 str.
EC4401]
gi|195940656|ref|ZP_03086038.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
str. EC4024]
gi|261227539|ref|ZP_05941820.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
str. FRIK2000]
gi|261254637|ref|ZP_05947170.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
str. FRIK966]
gi|291283144|ref|YP_003499962.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
CB9615]
gi|188013893|gb|EDU52015.1| heavy metal response regulator [Escherichia coli O157:H7 str.
EC4113]
gi|189355396|gb|EDU73815.1| heavy metal response regulator [Escherichia coli O157:H7 str.
EC4401]
gi|290763017|gb|ADD56978.1| Heavy metal response regulator [Escherichia coli O55:H7 str.
CB9615]
gi|320191940|gb|EFW66587.1| Putative two-component system response regulator YedW [Escherichia
coli O157:H7 str. EC1212]
gi|320641815|gb|EFX11203.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
str. G5101]
gi|320668529|gb|EFX35356.1| transcriptional regulatory protein YedW [Escherichia coli O157:H7
str. LSU-61]
gi|326344882|gb|EGD68629.1| Putative two-component system response regulator YedW [Escherichia
coli O157:H7 str. 1125]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|119493837|ref|ZP_01624404.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
gi|119452429|gb|EAW33618.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Lyngbya sp. PCC 8106]
Length = 374
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ D+R ++ L + V+ NG E L++ D++MPEMDG
Sbjct: 2 KRILVIEDESDVREIILDILEAEEFSVIGAENGKEGVRLALEHLPDLVICDVMMPEMDGY 61
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + E + +F+T A L+KPF +DL+ ++ +
Sbjct: 62 DVLKILREEKTTSTIPFVFLTAKATRENIRQGMNLGADDYLTKPFSRKDLLGAISSRIQK 121
Query: 121 K 121
K
Sbjct: 122 K 122
>gi|116251199|ref|YP_767037.1| two-component response regulator transcriptional regulatory protein
[Rhizobium leguminosarum bv. viciae 3841]
gi|115255847|emb|CAK06928.1| putative two-component response regulator transcriptional
regulatory protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L +AGY V +G + EP+ ++ DI +PE+DG+
Sbjct: 2 RILVVEDDVNLNRQLADTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPELDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRGVPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|15613383|ref|NP_241686.1| two-component response regulator [Bacillus halodurans C-125]
gi|10173434|dbj|BAB04539.1| two-component response regulator [Bacillus halodurans C-125]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KILL EDD + + + L GY V +G A + + L+L D+++P +GI
Sbjct: 4 HKILLIEDDVSISEMVKEHLQLEGYHVCCAFDGEEATRLFEQNTYDLVLLDLMLPRRNGI 63
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ ++ + ++KPF + +L V +
Sbjct: 64 DCLQWIR-TKSVVPVLIMSAKDSDVDKALGLGFGADDYITKPFSMIELTARVKAAIRR 120
>gi|332712276|ref|ZP_08432204.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
gi|332349082|gb|EGJ28694.1| signal transduction histidine kinase [Lyngbya majuscula 3L]
Length = 549
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 1 MNQ-----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIV 55
MNQ IL+ +D+ + FL K L AG++V +G ++V EP L+L D+
Sbjct: 1 MNQSPNTGTILIVDDNPNNLSFLYKTLESAGFQVRVEMDGEGTIEQVEYEPPDLILLDVN 60
Query: 56 MPEMDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNE 113
MP +DG E ++ + D+ ++F+T FA + + + KPF +++
Sbjct: 61 MPVIDGFETCKKLKNNPISKDIPIIFMTAFADINHKIKGLSLGAVDYIPKPFEQEEVLAR 120
Query: 114 VNRLLTI 120
V L +
Sbjct: 121 VRLHLKL 127
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ +D+ + R L+ L G+EVV+ NG D L+LTD+ MP
Sbjct: 425 RKLLVVDDNKENRLVLLNMLEPLGFEVVTAENGQQGLDVAIAIRPDLILTDLFMPVKTAF 484
Query: 63 ELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
+ E+ ++ ++ ++ + S L KP
Sbjct: 485 TMVPEMREIPDLKNVPIIALSARTFEIVQKQSQMLGCEGFLPKPIDQDR 533
>gi|329922877|ref|ZP_08278393.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
gi|328941650|gb|EGG37935.1| alkaline phosphatase synthesis transcriptional regulatory protein
PhoP [Paenibacillus sp. HGF5]
Length = 231
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 58/122 (47%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ +D+ + + AL + GY V + +G A ++V +++ D++MP +
Sbjct: 1 MT-KVLVVDDEISISSAVAYALRREGYTVETAGDGQEALERVESFDPDVMVLDVMMPRLS 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E ++ +T + ++KPF +R+++ V L+
Sbjct: 60 GYDVCRKL-EDRQRPAILLLTVKDDIVDKVLGLELGADDYMTKPFDMREIIARVKA-LSR 117
Query: 121 KN 122
++
Sbjct: 118 RS 119
>gi|326795631|ref|YP_004313451.1| transcriptional regulator [Marinomonas mediterranea MMB-1]
gi|326546395|gb|ADZ91615.1| two component transcriptional regulator, winged helix family
[Marinomonas mediterranea MMB-1]
Length = 259
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++L+ EDD ++ + + L K GYEV +NG A D + E L+L DI++P M G
Sbjct: 10 NTRLLVVEDDIELASLVQEFLSKNGYEVDVISNGLEAVDFILNEQPDLVLLDIMLPGMSG 69
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I++ + + ++ +T + KP R L++ + LL
Sbjct: 70 IDVCKTVRTQFNN-PILMLTSLDEDMDQMLGLELGADDYVIKPVKPRLLLSRIKALLRR 127
>gi|320324367|gb|EFW80446.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
glycinea str. B076]
gi|320328510|gb|EFW84512.1| DNA-binding response regulator BaeS [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+ + + L AGY +NG VR +P L+L DI++P DG+++
Sbjct: 10 ILIVEDEPKLASLMRDYLIAAGYSTHCLSNGLEVVPAVRAQPPQLILLDIMLPGRDGMDI 69
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + ++ IT + KPF R++V V +L
Sbjct: 70 CRELRS-FSAVPIVMITARVEEIDRLLGLDLGADDYICKPFSPREMVARVKAILRR 124
>gi|295707307|ref|YP_003600382.1| two-component response regulator [Bacillus megaterium DSM 319]
gi|294804966|gb|ADF42032.1| two-component response regulator [Bacillus megaterium DSM 319]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL +D+ + +FL L G+++ + +G + +E + + D+++P MDG E
Sbjct: 8 KVLLIDDEPTILQFLSLGLTNEGFDIKATQDGIEGINVAKEFKPHIAIVDVMLPGMDGFE 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R ++ ++ V+ +T V + KPF +L+ + I+N
Sbjct: 68 VCRLLKKMG-NIAVIMLTAKDQVDDRVKGLTIGADDYMVKPFSFEELLARIQA--RIRN 123
>gi|292493784|ref|YP_003529223.1| sigma-54 factor interaction domain-containing protein
[Nitrosococcus halophilus Nc4]
gi|291582379|gb|ADE16836.1| sigma-54 factor interaction domain-containing protein
[Nitrosococcus halophilus Nc4]
Length = 453
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M IL+ +D+ D+R + + L Y V NGA A + +P LLL DI MP++
Sbjct: 1 MTAPHILVVDDEPDIRILIHEILEDENYRVTVAENGAIARKVWQTDPPDLLLLDIWMPDI 60
Query: 60 DGIELARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGI L R T+ ++ V+ ++G V + + KP + L+ V + L
Sbjct: 61 DGISLLREWTQGPTKEVPVIMMSGHGTVETAVQATRLGAFDYIEKPLSMAKLLLTVEKAL 120
>gi|262195404|ref|YP_003266613.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
gi|262078751|gb|ACY14720.1| response regulator receiver sensor signal transduction histidine
kinase [Haliangium ochraceum DSM 14365]
Length = 395
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +D+ + FL + L + G++V+ +G A ++L D++MP +DG +
Sbjct: 22 TVLIVDDNPENLGFLFEYLEECGFKVLVALDGEEALSYATHALPDMILLDVMMPGIDGFD 81
Query: 64 LARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + D V+F++ + + ++KP + +++ +N ++++
Sbjct: 82 TCARLKTMPEARDTPVIFMSALSDPQDKLRAFELGGVDYVTKPINKEEVLARINAHVSLR 141
>gi|253572186|ref|ZP_04849590.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
gi|251838366|gb|EES66453.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. 1_1_6]
Length = 1366
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED D+MR +L K Y V+ NG + L+++DI+MP DG E +
Sbjct: 1116 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1174
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R E + ++F+T A A S + KPF+ L +V L+ ++
Sbjct: 1175 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQRD 1233
>gi|237710556|ref|ZP_04541037.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
gi|229455278|gb|EEO60999.1| two-component system response regulator [Bacteroides sp. 9_1_42FAA]
Length = 225
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD ++R ++L K Y V + +A K+ + + +L DI++P+ G++
Sbjct: 2 KILLVEDDANLREVTQRSLEKERYVVEIAADYRTALQKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ V+ ++ ++ L KPFHL +L + ++
Sbjct: 62 LLEKLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKSVIRR 118
>gi|307153686|ref|YP_003889070.1| winged helix family two component transcriptional regulator
[Cyanothece sp. PCC 7822]
gi|306983914|gb|ADN15795.1| two component transcriptional regulator, winged helix family
[Cyanothece sp. PCC 7822]
Length = 230
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE--PFSLLLTDIVMPEMDG 61
+ILL ED+ D+ L KAL + Y V +GA A+ + + ++L + D ++P + G
Sbjct: 2 RILLVEDEPDLGEALKKALNQKKYIVDWVQDGAEAWTCLESQWTEYNLAIVDWLLPGISG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ +R + L V+ +T + L KPF + +L+ + L +
Sbjct: 62 LDIIKRLRKQKNSLPVLMLTAKDQMEDKVIGLDAGADDYLIKPFGMAELLARLRA-LGRR 120
Query: 122 N 122
+
Sbjct: 121 S 121
>gi|182412191|ref|YP_001817257.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
PB90-1]
gi|177839405|gb|ACB73657.1| multi-sensor signal transduction histidine kinase [Opitutus terrae
PB90-1]
Length = 503
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+A+DD + L L + GYE+ +NG A ++ R L+L D++MPE++
Sbjct: 1 MNARILIADDDPLNQITLEAILQRDGYELHFAHNGLEACEQARRLRPDLMLLDVMMPEVN 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G E+ RR + ++ IT + LSKP +L V +
Sbjct: 61 GFEVCRRVRRDAEIGRMPIILITALLDEKSRLEGLRAGADDFLSKPCPSEELRARVRTV 119
>gi|170690127|ref|ZP_02881294.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170144562|gb|EDT12723.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 223
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LL ED+ ++ + + L A + V NG A + + + +++ D+ +P MDG E
Sbjct: 2 KLLLVEDNSELAHWTVNLLRLANFAVDCVPNGECADTMLTTQHYDVVVLDLRLPRMDGKE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T + D + KPF +R+LV + L+ ++
Sbjct: 62 VLARLRRRGDMVPVIMLTAHGSTDDKVDCFNAGADDYVVKPFDVRELVARIKALIRRQS 120
>gi|154499723|ref|ZP_02037761.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
29799]
gi|150271321|gb|EDM98578.1| hypothetical protein BACCAP_03380 [Bacteroides capillosus ATCC
29799]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
QKIL EDD + L L +GY V + A R + LLL D+ +P+ G
Sbjct: 2 QKILYVEDDLSLIDGLQYTLESSGYAVDNARTVKEALSLFRSNHYDLLLLDVTLPDGTGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++F+T ++KPF L +L++ + LL
Sbjct: 62 DVCKEVRS-SSTIPIIFLTASDQEISIVKGLDMGGDDYITKPFKLNELLSRIKALLRR 118
>gi|94312809|ref|YP_586018.1| winged helix family two component transcriptional regulator
[Cupriavidus metallidurans CH34]
gi|93356661|gb|ABF10749.1| two component transcriptional regulator, winged helix family
[Cupriavidus metallidurans CH34]
Length = 237
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +D+ ++R L + L G+ V + +G ++ EP+ LL+ D++M DG+
Sbjct: 6 RIIVLDDEAELRNMLQRFLTGHGFHVRAVADGKQLNRYLQREPYDLLVLDLMMEPEDGLS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ RR L ++ +T A L+KPF +LV + LL +
Sbjct: 66 VCRRLRAEGQTLPILMLTAKGDPADRVIGLDTGADDYLAKPFLPDELVARIRALLRRQ 123
>gi|330808379|ref|YP_004352841.1| histidine kinase, Hybrid [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327376487|gb|AEA67837.1| putative Histidine kinase, Hybrid [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 773
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L K G EV +G A D++ + F L+L D MP MDG E
Sbjct: 651 RVLLVEDNPVNQLVAKGMLVKLGCEVTVAAHGGEALDQLEQRVFDLVLMDCNMPVMDGYE 710
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+R+ + DL ++ +T A A LSKPF +L +++
Sbjct: 711 ASRQIRQSGRWSDLPIVALTANAMPEERERCRAAGMNDYLSKPFRREELAAVLDQW 766
>gi|323690863|ref|ZP_08105157.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum
WAL-14673]
gi|323505082|gb|EGB20850.1| hypothetical protein HMPREF9475_00018 [Clostridium symbiosum
WAL-14673]
Length = 214
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+A+DD ++R L L GY+VV+ ++G A + +E FSL++ D+ MP+ G
Sbjct: 8 HKILIADDDAEIREILSILLKGEGYQVVTASDG-DAVVALADEMFSLIILDVNMPKQSGF 66
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++F+T + + LSKPF + + V L+
Sbjct: 67 FACSEIRKKTM-VPILFLTARTQESDKAMGFSAGGDDYLSKPFSNAEFLMRVKALIRR 123
>gi|309795924|ref|ZP_07690337.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
gi|308120374|gb|EFO57636.1| transcriptional activator protein Irlr [Escherichia coli MS 145-7]
gi|320198658|gb|EFW73258.1| Putative two-component system response regulator YedW [Escherichia
coli EC4100B]
Length = 260
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|294852839|ref|ZP_06793512.1| two-component system protein [Brucella sp. NVSL 07-0026]
gi|294821428|gb|EFG38427.1| two-component system protein [Brucella sp. NVSL 07-0026]
Length = 241
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD +R L + L +G+ V + A K+ F LL+ D++MP G+
Sbjct: 21 HLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEVRRKLEGIDFDLLILDVMMPGETGVS 80
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R E ++ ++ +T + D A L KPF R+L +N +L
Sbjct: 81 LTRSLREQ-KNVPILILTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRR 136
>gi|228990402|ref|ZP_04150367.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
gi|228768928|gb|EEM17526.1| Two-component response regulator [Bacillus pseudomycoides DSM
12442]
Length = 210
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
MR+ + L GYE NG A + + + ++ DI+MP+MDGI + + +
Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK-TS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++F+T + + KPF +L+ + +L
Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106
>gi|226313242|ref|YP_002773136.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
gi|226096190|dbj|BAH44632.1| two-component response regulator [Brevibacillus brevis NBRC 100599]
Length = 234
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE--EPFSLLLTDIVMPEM 59
N I + EDD + + L K GY V +G K + F LLL D++MP++
Sbjct: 5 NHSIFIIEDDQAIVEMVETYLTKEGYAVTVAGDGDEGLRKFEQAQGRFDLLLVDLMMPKI 64
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ RR + ++ ++ + + KPF + +L + ++
Sbjct: 65 DGMEVIRRIRA-YSHVPILIMSAKDSDIDKALGLGFGADDYIEKPFSMIELSARLKAIIR 123
Query: 120 I 120
Sbjct: 124 R 124
>gi|224477348|ref|YP_002634954.1| hypothetical protein Sca_1863 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421955|emb|CAL28769.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 224
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD + ++ L K G++ V+ +N A + ++ + + DI+M MDG EL
Sbjct: 5 LIVDDDYQILHYVSSYLEKEGFKTVTYSNAEDALKYLDKQHVDIAIIDIMMNGMDGFELC 64
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + L V+ +T A++ ++ ++KPF +++L+ + +L
Sbjct: 65 QEIKDNY-TLPVIMLTARDALSDKEEAYLTGTDDYVTKPFEVQELIFRIKAVLRR 118
>gi|158338315|ref|YP_001519492.1| diguanylate cyclase/phosphodiesterase with response regulator
[Acaryochloris marina MBIC11017]
gi|158308556|gb|ABW30173.1| diguanylate cyclase/phosphodiesterase with response regulator,
putative [Acaryochloris marina MBIC11017]
Length = 636
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 54/118 (45%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L AL K GY+V NG+ A R L+L DI MPEMDG +
Sbjct: 23 ILIVDDTPHNLQILSTALTKQGYQVRGAANGSMALIGARNIMPDLILLDIKMPEMDGYTV 82
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R L D+ V+FI+ + ++KPF L +++ V LTI
Sbjct: 83 CERLKSEALTQDIPVIFISALDDALDKVKAFTVGGVDYITKPFQLAEILARVENQLTI 140
>gi|153816362|ref|ZP_01969030.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
gi|317501003|ref|ZP_07959211.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|331089043|ref|ZP_08337949.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846323|gb|EDK23241.1| hypothetical protein RUMTOR_02614 [Ruminococcus torques ATCC 27756]
gi|316897581|gb|EFV19644.1| regulatory protein VanR [Lachnospiraceae bacterium 8_1_57FAA]
gi|330406243|gb|EGG85762.1| hypothetical protein HMPREF1025_01532 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 232
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD ++ + L + GY ++ +G A + + E LLL D++MP++DGI
Sbjct: 4 ILVCDDDKEIVEAIEIYLTQEGYRILKAYDGTEALEMLEREEVHLLLLDVMMPKLDGIRA 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + A ++KPF +LV V L
Sbjct: 64 TLKIREKNS-IPIIILSAKSEDADKILGLNVGADDYVTKPFSPLELVARVKSQLRR 118
>gi|120555780|ref|YP_960131.1| two component transcriptional regulator [Marinobacter aquaeolei
VT8]
gi|120325629|gb|ABM19944.1| two component transcriptional regulator, winged helix family
[Marinobacter aquaeolei VT8]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 8 AEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARR 67
EDDD++R L + L G+ V NG + +++ DI++P+++G+++ R+
Sbjct: 2 IEDDDELRELLARYLASQGFSVREAANGRDGLALALGQDCDIVVLDIMLPDINGLDVLRQ 61
Query: 68 ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L V+ +T + KP + R+LV + LL
Sbjct: 62 LRGKT-HLPVILLTARGDETDRIVGFEVGADDYIPKPCNPRELVARLQALLRR 113
>gi|146313729|ref|YP_001178803.1| nitrogen regulation protein NR(I) [Enterobacter sp. 638]
gi|145320605|gb|ABP62752.1| nitrogen metabolism transcriptional regulator, NtrC, Fis Family
[Enterobacter sp. 638]
Length = 470
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G+ D + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALTGAGLNCTTFESGSEVLDALITKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|70731594|ref|YP_261335.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
Pf-5]
gi|68345893|gb|AAY93499.1| sensor histidine kinase/response regulator [Pseudomonas fluorescens
Pf-5]
Length = 773
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL ED+ + L K G V +GA A +++ F L+L D MP MDG E
Sbjct: 652 ILLVEDNPVNQLVAKGMLSKLGCAVTVAAHGAEALNQLELHRFDLVLMDCNMPVMDGYEA 711
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+R+ PDL ++ +T A A + L+KPF +L+ +
Sbjct: 712 SRQIRRSGRWPDLPIIALTANAMPEERERCRAAGMSDYLAKPFRREELIALL 763
>gi|301161893|emb|CBW21437.1| putative two-component system sensor histidine kinase/response
regulator fusion protein [Bacteroides fragilis 638R]
Length = 1361
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ ED+ D+R+++ Y V+ +G E L+++D++MP DG
Sbjct: 1112 KKTLLIVEDNVDVRQYIRSLFVTK-YTVLEAADGEEGVRIATNEIPDLIISDVMMPVKDG 1170
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R E + ++ +T A A + + KPF+ L +V L+
Sbjct: 1171 FACCREIRERQETAHIPILMLTAKAEDADVLQGSYSGADDYMMKPFNPEVLKAKVENLI 1229
>gi|58039171|ref|YP_191135.1| phosphate regulon response regulator PhoB [Gluconobacter oxydans
621H]
gi|58001585|gb|AAW60479.1| Phosphate regulon response regulator PhoB [Gluconobacter oxydans
621H]
Length = 240
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 47/118 (39%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL EDD + L + GY V + +G +A + ++ D ++P + G+++
Sbjct: 13 VLLVEDDPALLLMTCYNLEQRGYRVETAEDGEAALLVLETARPDAVVLDWMLPGLSGLDV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR D+ V+ +T +A L KP + L + LL
Sbjct: 73 CRRIRANPALRDVPVLLLTARSAEQDAIRGLDTGADDYLMKPCSIDTLDARLRALLRR 130
>gi|83945597|ref|ZP_00957943.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
HTCC2633]
gi|83850963|gb|EAP88822.1| hypothetical protein OA2633_14905 [Oceanicaulis alexandrii
HTCC2633]
Length = 228
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 51/115 (44%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD D+RR L L +GY V + +G EP+ ++ D+ +P++DG+ +
Sbjct: 4 LIVEDDPDLRRQLSDVLTHSGYAVDTAADGEDGLFLGETEPYDAIVLDLGLPKLDGVTVL 63
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + V+ +T + L+KPFH +L+ + L
Sbjct: 64 ERWRDAGMSAPVLILTARDRWSEKVAGFDAGADDYLTKPFHPEELLARLRALTRR 118
>gi|295815579|gb|ADG36299.1| SilR [Morganella sp. RP-42]
Length = 226
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G +
Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T + L KPF +L+ V LL N
Sbjct: 62 IIRMLRSAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120
>gi|320530934|ref|ZP_08031967.1| response regulator receiver domain protein [Selenomonas artemidis
F0399]
gi|320136799|gb|EFW28748.1| response regulator receiver domain protein [Selenomonas artemidis
F0399]
Length = 235
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M KILL EDD D+ L +G+ V ++G + L+L D+++P D
Sbjct: 1 MT-KILLVEDDTDIAELERDYLEASGFSVDISSDGDEGQRMALTGDYQLVLLDVMLPGAD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + R + D+ ++ ++ + + KPF +L V +T
Sbjct: 60 GFAICRAVRKEL-DIPILMVSARLEDIDKIRALGLGADDYIVKPFSPSELAARVKAHITR 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|297162476|gb|ADI12188.1| response regulator receiver protein [Streptomyces bingchenggensis
BCW-1]
Length = 258
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL EDD+ +R + L + G+ V + +G + + RE LLL D+++PE+DGI
Sbjct: 25 HLLLVEDDEVIRNTVRMLLERYGFTVSTAGDGLTGLELFRERRPDLLLLDVMLPELDGIG 84
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR EL ++ ++ + KP LV + LL
Sbjct: 85 LCRRVREL-SLAPILMMSARGDALDVVSGLEAGADDYVVKPCESAVLVARIRSLLRR 140
>gi|296137843|ref|YP_003645086.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
gi|296025977|gb|ADG76747.1| two component transcriptional regulator, winged helix family
[Tsukamurella paurometabola DSM 20162]
Length = 232
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN + +L+ ED+ + R + L + G++V +G RE ++++ DI +P +
Sbjct: 4 MNTESVLVIEDEPALGRLVRDYLTREGFDVTVAMDGERGLQLARELDPAVIILDIGLPRI 63
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R D V+ +T + L KPF R++V V +L
Sbjct: 64 DGLEVCRSLR-RFSDAYVLMLTARGDETDKIVGLSVGADDYLVKPFSPREVVARVRAMLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|264677348|ref|YP_003277254.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|299533046|ref|ZP_07046432.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
gi|262207860|gb|ACY31958.1| two component transcriptional regulator, winged [Comamonas
testosteroni CNB-2]
gi|298718931|gb|EFI59902.1| two component transcriptional regulator, winged [Comamonas
testosteroni S44]
Length = 233
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 49/115 (42%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL EDD MR L + L + G V +G SA + ++ D+ +P +DG+++
Sbjct: 8 LLVEDDSAMRTTLQRTLMRRGLHVDVAADGPSALAHWQTREPDAVVLDLSLPGLDGLQVL 67
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RA L V+ +T V L+KPF L +L + LL
Sbjct: 68 ERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRR 122
>gi|229004154|ref|ZP_04161955.1| Two-component response regulator [Bacillus mycoides Rock1-4]
gi|228757015|gb|EEM06259.1| Two-component response regulator [Bacillus mycoides Rock1-4]
Length = 210
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)
Query: 14 MRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELDP 73
MR+ + L GYE NG A + + + ++ DI+MP+MDGI + + +
Sbjct: 1 MRQLVGMYLDNFGYEWGEAENGKDALHMLDTDHYDFVILDIMMPQMDGISVCKEIRK-TS 59
Query: 74 DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
D+ ++F+T + + KPF +L+ + +L
Sbjct: 60 DVPIIFLTAKGEEWNRVNGLRMGADDYIVKPFSPGELIARMEAVLRR 106
>gi|168467335|ref|ZP_02701172.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195630133|gb|EDX48773.1| nitrogen regulation protein NR [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 469
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG ++ NG + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCITFENGNEVLAALASKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|164688358|ref|ZP_02212386.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
16795]
gi|164602771|gb|EDQ96236.1| hypothetical protein CLOBAR_02003 [Clostridium bartlettii DSM
16795]
Length = 222
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ EDD ++ L + L GY+V N+G ++ ++L+L DIVMP +D
Sbjct: 1 MEKYILVVEDDYKSQQLLQQFLTSNGYKVDCANDGLEGIQMYKDRNYNLILLDIVMPNLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + D+ ++F+T ++ + + KPF L+ + +L
Sbjct: 61 GFSMCKMIRKE-SDVPIIFVTALSSESDQIKGFDLLCDDYIVKPFSYNLLIKRIEAVLRR 119
>gi|158425598|ref|YP_001526890.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
gi|158332487|dbj|BAF89972.1| response regulator receiver [Azorhizobium caulinodans ORS 571]
Length = 239
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD+ +R L + L + GY V + + A A ++ F L++ D++MP GI+
Sbjct: 19 HLLVVDDDNRIRTLLSRFLSENGYRVTTAASAAEARGRMEGLEFDLIVLDVMMPGETGID 78
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR + ++ +T + ++KPF R+L+ + +L
Sbjct: 79 FARSLRA-TSSIPILMLTARSETMDRITGLEAGVDDYVAKPFEPRELLLRIGSILKR 134
>gi|154684868|ref|YP_001420029.1| YclJ [Bacillus amyloliquefaciens FZB42]
gi|154350719|gb|ABS72798.1| YclJ [Bacillus amyloliquefaciens FZB42]
Length = 227
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + K G+E ++G Y + EE + L++ DI++P MDG+
Sbjct: 2 KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T + ++KPF LV + ++
Sbjct: 62 ICRKIRE-TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>gi|108760941|ref|YP_632415.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
gi|34329419|gb|AAQ63912.1| mutant NtrC-like activator [Myxococcus xanthus]
gi|108464821|gb|ABF90006.1| sigma-54 dependent DNA-binding response regulator [Myxococcus
xanthus DK 1622]
Length = 471
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 67/123 (54%), Gaps = 1/123 (0%)
Query: 1 MN-QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M+ Q+IL+ +D+D+ RR + L + GYEV NGA A ++ E +++LTD+ MP+M
Sbjct: 1 MSPQRILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMPQM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L + A E D + +T FA+V ++ L KP ++ + ++L
Sbjct: 61 DGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPLDADQVLVTLGKVLE 120
Query: 120 IKN 122
++
Sbjct: 121 KRS 123
>gi|300724027|ref|YP_003713342.1| transcriptional regulatory protein tctD [Xenorhabdus nematophila
ATCC 19061]
gi|297630559|emb|CBJ91224.1| Transcriptional regulatory protein tctD [Xenorhabdus nematophila
ATCC 19061]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED D+ +L KAL +G+ V +G A ++ E ++LL+ D+ +P +DGI
Sbjct: 2 RLLLVEDHPDLSHWLQKALSTSGFVVDLAEDGIMADQLLQTESYALLILDVALPRLDGIS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + +L V+ +T + V L+KPF ++L + LL
Sbjct: 62 LLLRLRKRGQNLPVLLLTAKSGVTDRVKGLNSGADDYLTKPFDFQELEARIRALLRR 118
>gi|296111122|ref|YP_003621503.1| response regulator [Leuconostoc kimchii IMSNU 11154]
gi|295832653|gb|ADG40534.1| response regulator [Leuconostoc kimchii IMSNU 11154]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE + +G A K+ P +L++ D++MP M+G+
Sbjct: 2 KILVVDDDIEIAELLEIYLKNEGYEPIMAVDGKEALSKLNTNPDIALMILDVMMPNMNGL 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ + + D + ++ ++ + ++KPF+ +++ V LL
Sbjct: 62 EVVKVVRK-DSRIPILMLSAKSGDMDKIQGLITGADDYVTKPFNPLEVMARVRSLLRR 118
>gi|296120277|ref|YP_003628055.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
gi|296012617|gb|ADG65856.1| response regulator receiver [Planctomyces limnophilus DSM 3776]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED D+ L L GY V + +G S + + +++ D ++P + G +L
Sbjct: 4 LIVEDQPDLLFALRGMLEDEGYAVDTAADGESGLHRALVWEYDVIVLDWMLPRLSGFDLL 63
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ V+ +T VA L KPF +L+ + L+
Sbjct: 64 KQLR-TKKSTPVLMLTARDGVADRVQGLDQGADDYLVKPFDRGELLARLRALIRR 117
>gi|254422490|ref|ZP_05036208.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
gi|196189979|gb|EDX84943.1| response regulator receiver domain protein [Synechococcus sp. PCC
7335]
Length = 871
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 44/112 (39%)
Query: 9 EDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRA 68
EDD + + + L Y + +G P+ L+L D ++P++DG++L ++
Sbjct: 2 EDDRALAGAIEQLLLSHHYVMDLATDGIEGRGMAEVFPYDLILMDWMLPKLDGMQLCQQL 61
Query: 69 TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ +T A L KPF +L+ + LL
Sbjct: 62 RNEGNSTPIILLTARDASTDRVAGLDAGADDYLVKPFEFEELLARIRALLRR 113
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ +DD M L K L G+++ + + + + + LLL DI MP++ G
Sbjct: 568 TATLLVVDDDSSMLTLLQKLLQPWGFKIEILCDPSQFWQTLEKVEPDLLLLDIKMPQLSG 627
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L + +L ++F++ + + + KP +LV V L
Sbjct: 628 FDLCQVVRSDPRWHELPILFMSAHTDEKTIQEVFSVGADDYIRKPIVAPELVARVLGWLA 687
Query: 120 I 120
Sbjct: 688 R 688
Score = 40.1 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 21/62 (33%)
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
D +L L V+ + A+ +++L P +++ R+L
Sbjct: 503 DEFKLLAELRAAQSSLPVIVLAAEASFENRVRVARLGVSRLLQAPTSPAEILETAVRILQ 562
Query: 120 IK 121
+
Sbjct: 563 KR 564
>gi|261408286|ref|YP_003244527.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261284749|gb|ACX66720.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 239
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 23/121 (19%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYE-VVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
+ IL +D+ + + L L K + + + ++G A +V+E+ + ++L DI++P++
Sbjct: 3 SATILAVDDEIGILKLLEITLRKENFTHIDTVSSGKGALQRVKEKSYDMILLDIMLPDLS 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G EL + + ++FI+ + ++KPF+ +++ + +L
Sbjct: 63 GFELCTEIRKHT-NAPIIFISARSTDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRR 121
Query: 121 K 121
+
Sbjct: 122 Q 122
>gi|167893004|ref|ZP_02480406.1| DNA-binding response regulator [Burkholderia pseudomallei 7894]
Length = 237
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E
Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 118
>gi|157963163|ref|YP_001503197.1| DNA-binding transcriptional regulator TorR [Shewanella pealeana
ATCC 700345]
gi|157848163|gb|ABV88662.1| two component transcriptional regulator, winged helix family
[Shewanella pealeana ATCC 700345]
Length = 236
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ +R L K GYEV+ +G + + + L++ DI +P +D
Sbjct: 1 MGYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWQEFDRQHIDLVMLDINLPGVD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ LAR + ++ +TG ++KPF LR+L+ V LL
Sbjct: 61 GLSLARELRSR-SHVGIILVTGRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLL 117
>gi|121603068|ref|YP_980397.1| two component transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120592037|gb|ABM35476.1| two component transcriptional regulator, winged helix family
[Polaromonas naphthalenivorans CJ2]
Length = 241
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q++L+ EDD + + + L ++GY G + + ++ P L++ D+++P+MD
Sbjct: 1 MTQQLLMIEDDTRLASMVGEYLRQSGYGFAHAATGTAGLEALQATPPDLVILDLMLPDMD 60
Query: 61 GIELARRATELDPD---LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+E+ RR D V+ +T L KPF R+L+ + +
Sbjct: 61 GLEVCRRIKGRGGDAARTAVLMLTAKGDPMDRIVGLEIGADDYLPKPFEPRELLARIRAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|77406220|ref|ZP_00783289.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
gi|77175170|gb|EAO77970.1| DNA-binding response regulator [Streptococcus agalactiae H36B]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++ + L + GY+ ++ +NG A + + E L++TDI+MP MDG +
Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + ++ ++ +T + + + KP L++L + LL N
Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGXDDYMVKPVQLQELALRIKALLRRAN 121
>gi|332983367|ref|YP_004464808.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332701045|gb|AEE97986.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ +D+ +R F+ AL Y + NG +A +++ D+ +P++D
Sbjct: 1 MNPLILIVDDEKSIRHFIKVALETQSYRCMEAENGLTAISLAASYSPDIMILDLGLPDID 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI++ ++ E L ++ ++ ++ L+KPF + +L+ + L
Sbjct: 61 GIDVIKKIRE-WSALDIIVVSARGHERQKVEALDAGADDYLTKPFSVPELLARIRVALRR 119
Query: 121 KN 122
+N
Sbjct: 120 EN 121
>gi|317473767|ref|ZP_07933048.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
gi|316910024|gb|EFV31697.1| response regulator receiver domain-containing protein [Bacteroides
eggerthii 1_2_48FAA]
Length = 1359
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+D++R +L + L Y V C+NG SA ++E L+++DI+MPEM G E
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ +T D + + KPF++ L + LL +
Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214
>gi|297201439|ref|ZP_06918836.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
gi|197713846|gb|EDY57880.1| phosphate regulon transcriptional regulatory protein PhoB
[Streptomyces sviceus ATCC 29083]
Length = 234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRADRPDIALLDVMVPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|163745287|ref|ZP_02152647.1| DNA-binding response regulator PetR [Oceanibulbus indolifex HEL-45]
gi|161382105|gb|EDQ06514.1| DNA-binding response regulator PetR [Oceanibulbus indolifex HEL-45]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
MN+ +L+ +DD+ +R L K L + G+ V + + A A + F L++ D++MP
Sbjct: 1 MNELDAHLLVVDDDERIRSLLRKFLMRHGFLVSTARDAAHARRVLAGLEFDLIVLDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG+EL R E ++ +T + L KPF ++L+ +N +
Sbjct: 61 GEDGMELTRSLRETL-QTPILLLTAKGETDNRIEGLEAGADDYLPKPFEPKELLLRINAI 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|119944994|ref|YP_942674.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Psychromonas ingrahamii 37]
gi|119863598|gb|ABM03075.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Psychromonas ingrahamii 37]
Length = 472
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 61/115 (53%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD D+ L + + GY V ++G +A + +R ++LTD+ MP MDG E
Sbjct: 14 TVLIVDDDPDICSLLSYLMKREGYVVEIVHDGMAALELMRNRVPDIILTDLRMPRMDGFE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L ++ + DL V+ +T +A V +S L+KPF +V V+R+L
Sbjct: 74 LLKQVKLIKQDLPVVILTAYAGVHGAVESMKEGADDYLAKPFDNSKVVMLVHRIL 128
>gi|87311190|ref|ZP_01093313.1| sensory transduction histidine kinase [Blastopirellula marina DSM
3645]
gi|87286098|gb|EAQ78009.1| sensory transduction histidine kinase [Blastopirellula marina DSM
3645]
Length = 543
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV---REEPFSLLLTDIVMPEMD 60
+L+ ED ++ + + L AG V S +GA A + + +E PF L+L D+ MP M
Sbjct: 419 HVLIVEDAPSIQFLVRRILEGAGATVTSAGDGAEAIEMLLADQERPFDLVLMDMHMPIMS 478
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-LLT 119
G + A+ + ++ ++ +T A A L KP R L+ V + +L
Sbjct: 479 GYDAAQALRQKGCEIPIIALTASAMTGDRIKCLAAGCDDYLPKPIDQRKLLQMVAKYVLQ 538
Query: 120 IK 121
+
Sbjct: 539 NR 540
>gi|229118514|ref|ZP_04247867.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
gi|228664895|gb|EEL20384.1| Two component transcriptional regulator, winged helix [Bacillus
cereus Rock1-3]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ EDD +R F+ + +AG+ V+ + G A + + + +++ D+++P +D
Sbjct: 1 MT-TILVLEDDITIRSFITLNMQRAGFNVLETDTGEKALELLEQNNVDIVILDVMLPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + + D+ ++ +T + KPF + +LV V LL
Sbjct: 60 GFRVCKSIRKNNEDIGIIILTALVQEKDQVHGLTIGADDYIKKPFSIIELVARVQSLLRR 119
>gi|225619217|ref|YP_002720443.1| response regulatory protein AtoC [Brachyspira hyodysenteriae WA1]
gi|225214036|gb|ACN82770.1| response regulatory protein (atoC) [Brachyspira hyodysenteriae WA1]
Length = 449
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E
Sbjct: 3 KILVIDDEKNIRDGIKKSLEFEGYEVVTAENGEKGIEAVYKGGIDLVITDLKMPEKTGEE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + D + V+ +TG V + ++KPF+L ++ + R L KN
Sbjct: 63 FLKDILDFDKHIPVIVLTGHGNVETAVEMMRLGAYDFMTKPFNLDKMLLIIARALESKN 121
>gi|170697061|ref|ZP_02888157.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia ambifaria IOP40-10]
gi|170138235|gb|EDT06467.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia ambifaria IOP40-10]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M +L K L +A Y V NG E F L++ D+++PE+DG E
Sbjct: 2 RILIVEDEPKMASYLRKGLAEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPELDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T A+ L KPF + + + LL
Sbjct: 62 VLRRLRAQ-KQTPVLLLTARDAIEDKVTGLELGADDYLLKPFAYAEFLARIRSLLRR 117
>gi|37548744|gb|AAN07017.1| putative response regulator [Bacillus subtilis]
Length = 245
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 20/124 (16%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ K+L+ +D+ ++ + L + G V++ + + +E L++ DI++
Sbjct: 11 MSRLHSKVLIIDDEKEILELIKTVLIREGIDRVITASTARDGLAQFHQENSDLVILDIML 70
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P+ +G ++ ++ ++ + ++F++ A ++KPF +++ V
Sbjct: 71 PDGEGYDICKQIRDI-SHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKA 129
Query: 117 LLTI 120
L
Sbjct: 130 QLRR 133
>gi|71278719|ref|YP_268169.1| transcriptional regulatory protein RstA [Colwellia psychrerythraea
34H]
gi|71144459|gb|AAZ24932.1| transcriptional regulatory protein RstA [Colwellia psychrerythraea
34H]
Length = 248
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL EDD D+ ++ L ++V +C+ G A D ++ ++L D ++P MDG++
Sbjct: 8 HILLVEDDIDLAEWIADYLIGREFKVTTCHRGDDAVDLIQSLNPDIVLLDGMLPGMDGLD 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + ++ IT ++KP R L+ + LL ++
Sbjct: 68 VCKTVRATFDN-PIIMITARDEEIDEVLGLEMGADDYITKPVRARVLLARIRGLLRRED 125
>gi|22124591|ref|NP_668014.1| DNA-binding transcriptional regulator BasR [Yersinia pestis KIM 10]
gi|45440430|ref|NP_991969.1| DNA-binding transcriptional regulator BasR [Yersinia pestis biovar
Microtus str. 91001]
gi|51594821|ref|YP_069012.1| DNA-binding transcriptional regulator BasR [Yersinia
pseudotuberculosis IP 32953]
gi|108806055|ref|YP_649971.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
Antiqua]
gi|108813411|ref|YP_649178.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
Nepal516]
gi|145600803|ref|YP_001164879.1| DNA-binding transcriptional regulator BasR [Yersinia pestis
Pestoides F]
gi|153948791|ref|YP_001402561.1| BasR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|153997284|ref|ZP_02022384.1| two-component system response regulator [Yersinia pestis CA88-4125]
gi|162418181|ref|YP_001608275.1| DNA-binding transcriptional regulator BasR [Yersinia pestis Angola]
gi|165928165|ref|ZP_02223997.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165937403|ref|ZP_02225966.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. IP275]
gi|166011292|ref|ZP_02232190.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166214025|ref|ZP_02240060.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. B42003004]
gi|167401228|ref|ZP_02306728.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167420653|ref|ZP_02312406.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167423155|ref|ZP_02314908.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|167470191|ref|ZP_02334895.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis FV-1]
gi|170025956|ref|YP_001722461.1| DNA-binding transcriptional regulator BasR [Yersinia
pseudotuberculosis YPIII]
gi|186893830|ref|YP_001870942.1| DNA-binding transcriptional regulator BasR [Yersinia
pseudotuberculosis PB1/+]
gi|218930521|ref|YP_002348396.1| DNA-binding transcriptional regulator BasR [Yersinia pestis CO92]
gi|229839160|ref|ZP_04459319.1| two-component system response regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229896649|ref|ZP_04511816.1| two-component system response regulator [Yersinia pestis Pestoides
A]
gi|229899724|ref|ZP_04514865.1| two-component system response regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903886|ref|ZP_04518999.1| two-component system response regulator [Yersinia pestis Nepal516]
gi|270489125|ref|ZP_06206199.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294505362|ref|YP_003569424.1| two-component system response regulator [Yersinia pestis Z176003]
gi|21957394|gb|AAM84265.1|AE013670_2 transcriptional regulatory protein, member of 2-component
regulatory system [Yersinia pestis KIM 10]
gi|30314186|gb|AAP12460.1| BasR/PmrA-like two-component system response regulator [Yersinia
pseudotuberculosis (type O:1b)]
gi|45435287|gb|AAS60846.1| two-component system response regulator [Yersinia pestis biovar
Microtus str. 91001]
gi|51588103|emb|CAH19709.1| two-component system response regulator [Yersinia
pseudotuberculosis IP 32953]
gi|108777059|gb|ABG19578.1| two-component system response regulator [Yersinia pestis Nepal516]
gi|108777968|gb|ABG12026.1| two-component system response regulator [Yersinia pestis Antiqua]
gi|115349132|emb|CAL22095.1| two-component system response regulator [Yersinia pestis CO92]
gi|145212499|gb|ABP41906.1| two-component system response regulator [Yersinia pestis Pestoides
F]
gi|149288921|gb|EDM39001.1| two-component system response regulator [Yersinia pestis CA88-4125]
gi|152960286|gb|ABS47747.1| transcriptional regulatory protein BasR/PmrA [Yersinia
pseudotuberculosis IP 31758]
gi|162350996|gb|ABX84944.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
Angola]
gi|165914508|gb|EDR33122.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. IP275]
gi|165919852|gb|EDR37153.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. F1991016]
gi|165989676|gb|EDR41977.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. E1979001]
gi|166204820|gb|EDR49300.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. B42003004]
gi|166961459|gb|EDR57480.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Orientalis str. MG05-1020]
gi|167049253|gb|EDR60661.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Antiqua str. UG05-0454]
gi|167057325|gb|EDR67071.1| transcriptional regulatory protein BasR/PmrA [Yersinia pestis
biovar Mediaevalis str. K1973002]
gi|169752490|gb|ACA70008.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis YPIII]
gi|186696856|gb|ACC87485.1| two component transcriptional regulator, winged helix family
[Yersinia pseudotuberculosis PB1/+]
gi|229679656|gb|EEO75759.1| two-component system response regulator [Yersinia pestis Nepal516]
gi|229687216|gb|EEO79291.1| two-component system response regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695526|gb|EEO85573.1| two-component system response regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229700427|gb|EEO88459.1| two-component system response regulator [Yersinia pestis Pestoides
A]
gi|262363427|gb|ACY60148.1| two-component system response regulator [Yersinia pestis D106004]
gi|262367198|gb|ACY63755.1| two-component system response regulator [Yersinia pestis D182038]
gi|270337629|gb|EFA48406.1| response regulator receiver domain protein [Yersinia pestis KIM
D27]
gi|294355821|gb|ADE66162.1| two-component system response regulator [Yersinia pestis Z176003]
gi|320013711|gb|ADV97282.1| two-component system response regulator [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ EDD+ ++R + AL GY A A+ ++ +S+++ D+ +P+ DG
Sbjct: 2 KLLIVEDDELLQRGIAMALTSEGYVCDCAATAAEAHSLLQTSQYSMIILDLGLPDQDGTL 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ L V+ +T A+ D L KPF L +L+ V L+
Sbjct: 62 LLRQWRRQHVTLPVLILTARDALEDRVDGLDAGADDYLVKPFALAELLARVRALIRR 118
>gi|315646765|ref|ZP_07899880.1| two-component response regulator [Paenibacillus vortex V453]
gi|315277695|gb|EFU41019.1| two-component response regulator [Paenibacillus vortex V453]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV--REEPFSLLLTDIVMPE 58
M +IL+ +DD ++ + K + + E NG + +V + +SL++ D+++P
Sbjct: 1 MTNRILIIDDDVELCSLVKKCVSQVNLETDMAYNGQTGLLQVMNENDSYSLIILDVMLPN 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ + ++ V+ +T + + L+KPF + +L+ V L+
Sbjct: 61 MDGFQVLSEIRK-YSNVPVLMLTAKGSEPDKVTGLSLGADDYLTKPFSINELIARVQSLI 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|297571976|ref|YP_003697750.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
gi|296932323|gb|ADH93131.1| two component transcriptional regulator, winged helix family
[Arcanobacterium haemolyticum DSM 20595]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M K+L+ EDD + L++A + GY+V S G A D V L++ D+ +P+MD
Sbjct: 1 MT-KVLIVEDDSAISGPLVRAFTREGYDVTSVATGQEAIDLVSS-SIDLMVLDLGLPDMD 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++AR A ++ +T A ++KPF L +L+ V LL
Sbjct: 59 GLDVARAARTEGQSCPILILTARAEEVDMVVGLDAGADDYVTKPFRLAELLARVRALLRR 118
>gi|291529349|emb|CBK94935.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Eubacterium rectale
M104/1]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD+D+ + L GY+ +G DK+ + + LLL DI++PE++G EL
Sbjct: 4 ILIVEDDNDINNLICNTLKAEGYQCERAFDGKEGADKIEQNRYDLLLLDIMLPEINGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ D V+ I+ V + KPF + +L+ V +L
Sbjct: 64 LDYVRRIG-DTPVIIISAMGQVDERIRGLRMGADDYICKPFQIGELLARVETVLRR 118
>gi|218134349|ref|ZP_03463153.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
43243]
gi|217989734|gb|EEC55745.1| hypothetical protein BACPEC_02242 [Bacteroides pectinophilus ATCC
43243]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/116 (30%), Positives = 58/116 (50%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ + K L K GY+V S ++GA A + + +E L+++DI+MP MDG EL
Sbjct: 4 ILIVEDDKELSQLFQKVLEKNGYQVKSASDGALALEILDKEYIDLIISDIMMPVMDGYEL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ IT + + + KP ++ ++V V LL
Sbjct: 64 VSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPVNVNEMVLRVGALLRR 119
>gi|261408948|ref|YP_003245189.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
gi|261285411|gb|ACX67382.1| integral membrane sensor hybrid histidine kinase [Paenibacillus sp.
Y412MC10]
Length = 1049
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD + + L GY +V+ A + + + L+++D++MP+M G E
Sbjct: 720 RLLIVDDDPVNLKVIHHLLADEGYRIVTVTRAEEALQLLEQGEWDLIISDVMMPQMSGYE 779
Query: 64 LARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L+R + +L ++ +T L KP +L V LL +K
Sbjct: 780 LSRTIRQRYMLSELPILLLTARNRPEDIHMGFISGANDYLIKPVDHLELKTRVRALLELK 839
>gi|157155786|ref|YP_001463269.1| transcriptional regulatory protein YedW [Escherichia coli E24377A]
gi|157161437|ref|YP_001458755.1| transcriptional regulatory protein YedW [Escherichia coli HS]
gi|170019701|ref|YP_001724655.1| transcriptional regulatory protein YedW [Escherichia coli ATCC
8739]
gi|191169243|ref|ZP_03030996.1| heavy metal response regulator [Escherichia coli B7A]
gi|194430371|ref|ZP_03062859.1| heavy metal response regulator [Escherichia coli B171]
gi|297516682|ref|ZP_06935068.1| transcriptional regulatory protein YedW [Escherichia coli OP50]
gi|300920190|ref|ZP_07136638.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
gi|300951603|ref|ZP_07165432.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
gi|300956508|ref|ZP_07168794.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
gi|301327760|ref|ZP_07220962.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
gi|301644571|ref|ZP_07244563.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
gi|307312448|ref|ZP_07592082.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|331668658|ref|ZP_08369506.1| transcriptional activator protein CopR [Escherichia coli TA271]
gi|157067117|gb|ABV06372.1| heavy metal response regulator [Escherichia coli HS]
gi|157077816|gb|ABV17524.1| heavy metal response regulator [Escherichia coli E24377A]
gi|169754629|gb|ACA77328.1| two component heavy metal response transcriptional regulator,
winged helix family [Escherichia coli ATCC 8739]
gi|190900721|gb|EDV60517.1| heavy metal response regulator [Escherichia coli B7A]
gi|194411591|gb|EDX27925.1| heavy metal response regulator [Escherichia coli B171]
gi|300316692|gb|EFJ66476.1| transcriptional activator protein Irlr [Escherichia coli MS 175-1]
gi|300412786|gb|EFJ96096.1| transcriptional activator protein Irlr [Escherichia coli MS 115-1]
gi|300449146|gb|EFK12766.1| transcriptional activator protein Irlr [Escherichia coli MS 116-1]
gi|300845693|gb|EFK73453.1| transcriptional activator protein Irlr [Escherichia coli MS 78-1]
gi|301077107|gb|EFK91913.1| transcriptional activator protein Irlr [Escherichia coli MS 146-1]
gi|306907619|gb|EFN38122.1| two component transcriptional regulator, winged helix family
[Escherichia coli W]
gi|315061264|gb|ADT75591.1| predicted DNA-binding response regulator in two-component system
with YedV [Escherichia coli W]
gi|320174282|gb|EFW49439.1| putative two-component system response regulator YedW [Shigella
dysenteriae CDC 74-1112]
gi|320185520|gb|EFW60287.1| Putative two-component system response regulator YedW [Shigella
flexneri CDC 796-83]
gi|323378157|gb|ADX50425.1| two component heavy metal response transcriptional regulator,
winged helix family [Escherichia coli KO11]
gi|323940374|gb|EGB36565.1| heavy metal response regulator [Escherichia coli E482]
gi|331063852|gb|EGI35763.1| transcriptional activator protein CopR [Escherichia coli TA271]
Length = 260
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|94310594|ref|YP_583804.1| DNA-binding response regulator CreB [Cupriavidus metallidurans
CH34]
gi|93354446|gb|ABF08535.1| DNA-binding response regulator in two-component regulatory system
with CreC [Cupriavidus metallidurans CH34]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ + ++ AL G +V +C G+ A D+VR L++ D+ +P++ G E+
Sbjct: 6 VLVVEDESAIADTILYALRTEGMQVETCTLGSEALDRVRSRRPDLVILDVGLPDISGFEV 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R D+ V+F+T + KPF R+L V +L
Sbjct: 66 CRSMR-TFSDVPVIFLTARHEEIDRIVGLEIGADDYVVKPFSPRELAARVRVILRR 120
>gi|56459602|ref|YP_154883.1| response regulator [Idiomarina loihiensis L2TR]
gi|56178612|gb|AAV81334.1| Response regulator (CheY,wHTH domains) [Idiomarina loihiensis L2TR]
Length = 219
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +IL+ ED+ R+ L + + GYEV +G + +R+E +++ D+ +P +
Sbjct: 1 MNARILIVEDEVVTRQTLTRLFQQEGYEVFDAADGLQMENIMRQERVDVVIMDVNLPGKN 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ELA E D ++ ++F+TG + + L KP++ ++L V L
Sbjct: 61 GLELAESLRESD-NIGLIFLTGRDSEDDRLLALELGADDYLIKPYNPKELTIRVRNLCRR 119
>gi|121998122|ref|YP_001002909.1| Fis family two component sigma-54 specific transcriptional
regulator [Halorhodospira halophila SL1]
gi|121589527|gb|ABM62107.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Halorhodospira halophila SL1]
Length = 457
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+++ IL+ +DD + R + L +GY +C +G A ++ +P ++TD+ M
Sbjct: 1 MSERPRILVVDDDPSLCRLMEMRLEASGYAPTTCESGERALAELERQPADAVITDLRMEG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+ L E P L V+ +T ++ ++ + L+KPF +L+ ++ + L
Sbjct: 61 MDGLALFDAVRERWPALPVIILTAHGSIQDAVEATRRGVHEFLTKPFDPPELLEQLEKAL 120
Query: 119 TIK 121
T +
Sbjct: 121 TAR 123
>gi|332992601|gb|AEF02656.1| two component transcriptional regulator [Alteromonas sp. SN2]
Length = 237
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-KVREEPFSLLLTDIVMPEMD 60
KILL +DD ++ L + L G+ V + N+G +A ++ + F ++ DI+MP M
Sbjct: 5 KYKILLVDDDAELCALLSEFLQTDGFAVETLNSGDAAVARLLQSDEFDTVVLDIMMPGMS 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R ++ +TG L+KP + R+L + ++
Sbjct: 65 GLDVLRNVRAK-KQTPILMLTGRGDDIDRILGLEMGADDYLAKPCNPRELGARIRAIIRR 123
>gi|332883803|gb|EGK04083.1| hypothetical protein HMPREF9456_01111 [Dysgonomonas mossii DSM 22836]
Length = 1396
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D++D F+ Y V N+G Y V ++ ++L D++MP+MDG E
Sbjct: 1149 LIVDDNEDFCEFITSLFID-DYRTVIANDGEEGYSIVLDQLPDIILCDVMMPKMDGYEFC 1207
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + ++ +T ++ +SKPF++ L ++ +++ +
Sbjct: 1208 RHVKGDIRTSHIPIILLTAKSSEESKYSGIEAGADDYISKPFNIDMLKLKIAKIIERQ 1265
>gi|327542393|gb|EGF28876.1| multi-sensor hybrid histidine kinase [Rhodopirellula baltica WH47]
Length = 993
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMP 57
+++L+ +D + RR + L +AG V+S NG A D + E P+ L+L D+ MP
Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DG R E + V+ +TG A L+KP +L +L+ V++
Sbjct: 642 VLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVSQY 701
Query: 118 L 118
L
Sbjct: 702 L 702
>gi|309812003|ref|ZP_07705769.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
gi|308434061|gb|EFP57927.1| putative response regulator MprA [Dermacoccus sp. Ellin185]
Length = 242
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +D++ + L A G++V++ G+ A R E +++ DI +P+ DG +
Sbjct: 17 RVLIVDDEEGLLASLSAAFTFQGWQVLTATTGSQAVALARRESPDVVVLDIGLPDTDGFD 76
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + P+ V+F+T A+ L+KPF L +++ L+
Sbjct: 77 VLARIRSILPEAGVIFLTARDALEDRVSGIRQGADDYLTKPFSLEEVIVRAEALMRR 133
>gi|307330420|ref|ZP_07609564.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
gi|306883937|gb|EFN14979.1| two component transcriptional regulator, winged helix family
[Streptomyces violaceusniger Tu 4113]
Length = 230
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L EDDD +R AL + G+ V + +G + ++ R + + L D+++P +DG+ L
Sbjct: 2 LFVEDDDVIREATQLALERDGFLVTAAPDGLTGLERFRADRPDIALLDVMVPGLDGVSLC 61
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR + + V+ ++ A ++KPF LV + +L
Sbjct: 62 RRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 115
>gi|270157584|ref|ZP_06186241.1| response regulator TutC [Legionella longbeachae D-4968]
gi|289164037|ref|YP_003454175.1| sensor histidine kinase [Legionella longbeachae NSW150]
gi|269989609|gb|EEZ95863.1| response regulator TutC [Legionella longbeachae D-4968]
gi|288857210|emb|CBJ11031.1| putative sensor histidine kinase [Legionella longbeachae NSW150]
Length = 806
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 3/120 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ M FL + L K Y ++ ++G +K E ++++DI+MP+M+GIE+
Sbjct: 458 VLIVEDNPAMNEFLCEILSKE-YRIICAHDGKEGLEKAIEFLPHVIISDIMMPDMNGIEM 516
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ +M +T A L ++KPF ++L + L+ +KN
Sbjct: 517 VHAIRKHSSLLSTPIMIVTAKADDDLRVRILQEGAQDYMTKPFSAQELKARIANLVLVKN 576
>gi|255527946|ref|ZP_05394788.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
gi|255508373|gb|EET84771.1| two component transcriptional regulator, winged helix family
[Clostridium carboxidivorans P7]
Length = 217
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L A YE + NG A ++ + F L+L D+++P++DG
Sbjct: 3 KILVVEDELPISNLIKLNLNMANYECKTAFNGEEALKEIENDSFDLILLDVMLPKIDGFT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + L + V+F+T +V ++KPF +L+ ++ +L N
Sbjct: 63 LLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119
>gi|237654631|ref|YP_002890945.1| two component heavy metal response transcriptional regulator,
winged helix family [Thauera sp. MZ1T]
gi|237625878|gb|ACR02568.1| two component heavy metal response transcriptional regulator,
winged helix family [Thauera sp. MZ1T]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L + L +AG+ V +G + L++ D+++P +DG
Sbjct: 2 KILIVEDEVKTGDYLRQGLTEAGFVVDLARDGLDGLHLALNGDYDLIVLDVMLPSLDGWG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T + L KPF +L+ V LL
Sbjct: 62 ILQTLRRGGRETPVLFLTARDQIEDRVRGLELGADDYLVKPFAFSELLARVRTLLRR 118
>gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus
terrae PB90-1]
gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus
terrae PB90-1]
Length = 204
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ +D+ +RR + L G+ V NG + R E L++ DI MPEM+G
Sbjct: 2 KRILVIDDEAKLRRQFAELLNLEGFAVSEARNGREGVELARRERPDLVMCDITMPEMNGH 61
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +F+TG+ L KP DL+ V L
Sbjct: 62 RVLEALRAEPATSHVPFIFLTGWGEREDVRTGMNLGADDYLVKPVEPADLIAAVQARLRR 121
>gi|220917058|ref|YP_002492362.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
gi|219954912|gb|ACL65296.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-1]
Length = 464
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 66/118 (55%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D++ +R L L K GY V +G +A +K++ E +S+L+ D+ MP MDG++
Sbjct: 7 RILVVDDEEIVRESLGGWLEKDGYSVHVAADGFAAVEKLKGERWSILIVDLKMPGMDGLQ 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ A +L P+L V+ +T +A V + L KPF +L + ++++ +
Sbjct: 67 VLEEAKKLLPELAVVIMTAYATVDTAVAAMKLGAYDYLVKPFDPEELSLMMQKIVSQQ 124
>gi|160881990|ref|YP_001560958.1| two component transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160430656|gb|ABX44219.1| two component transcriptional regulator, winged helix family
[Clostridium phytofermentans ISDg]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + L +G+EV N G + L++ D+++P +DG E
Sbjct: 3 KILIVEDEAAIAELEKDYLELSGFEVDIENTGDKGLAAALTGDYKLIILDLMLPNVDGFE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R E ++ V+ ++ ++KPF +LV V L
Sbjct: 63 ICKRVREE-KNIPVIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|19704596|ref|NP_604158.1| two-component response regulator [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296327707|ref|ZP_06870248.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|19714890|gb|AAL95457.1| Two-component response regulator [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296155193|gb|EFG95969.1| response regulator [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN KIL+ EDD +++R L L Y V S +G + + + L+L D+++P+
Sbjct: 10 MN-KILIIEDDKNIQRLLTLELRHKNYSVDSAYDGEQGIEMFSKNSYDLVLLDLMLPKKS 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E+ + +L + ++ IT +V + + KPF + +L+ +
Sbjct: 69 GKEVCQELRKL-AETPIIIITAKDSVLDKVELLDLGANDYICKPFAMEELLARIRVATRN 127
Query: 121 K 121
K
Sbjct: 128 K 128
>gi|29347801|ref|NP_811304.1| two-component system sensor histidine kinase/response regulator
[Bacteroides thetaiotaomicron VPI-5482]
gi|29339702|gb|AAO77498.1| two-component system sensor histidine kinase/response regulator,
hybrid (one component system) [Bacteroides
thetaiotaomicron VPI-5482]
Length = 1377
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED D+MR +L K Y V+ NG + L+++DI+MP DG E +
Sbjct: 1127 LIIEDHDEMREYLCSLF-KEDYNVIEAENGEEGVAMADKYIPKLIISDIMMPVKDGFECS 1185
Query: 66 RRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R E + ++F+T A A S + KPF+ L +V L+ ++
Sbjct: 1186 REIRENKRTFHIPIIFLTAKAEDADRLKSLQIGVDDYIMKPFNPELLKEKVKALIEQRD 1244
>gi|84496580|ref|ZP_00995434.1| two-component regulatory protein [Janibacter sp. HTCC2649]
gi|84383348|gb|EAP99229.1| two-component regulatory protein [Janibacter sp. HTCC2649]
Length = 241
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + + L+ ED+ MR + AL + ++ + A+ + E+ L++ D+++P
Sbjct: 1 MTEAPWRALVVEDEPAMRDIITFALETQDFTTLTAGSAEEAWTIINEQQVDLVVLDVMLP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
M GIEL RR T P + V+ +T + + ++KPFH R+L L
Sbjct: 61 GMSGIELCRRVTSTKP-VPVILLTALGETSQRIAGLEAGASDYVTKPFHPRELALRAAGL 119
Query: 118 LTI 120
+
Sbjct: 120 VRR 122
>gi|94313390|ref|YP_586599.1| two component heavy metal response transcriptional regulator,
winged helix family [Cupriavidus metallidurans CH34]
gi|93357242|gb|ABF11330.1| two component heavy metal response transcriptional regulator,
winged helix family [Cupriavidus metallidurans CH34]
Length = 206
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L+K L ++G+ +G RE+ + L++ D+++P MDG +
Sbjct: 2 RILIVEDEPKAGDYLLKGLTESGFVADLARDGVDGLAHAREQHYDLIVLDVMLPGMDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D D V+ +T ++ + KPF +LV + +L
Sbjct: 62 VLRELR-RDKDTPVLCLTARDELSDRLKGLELGADDYMVKPFAFAELVARIRTILRR 117
>gi|186681435|ref|YP_001864631.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
gi|186463887|gb|ACC79688.1| response regulator receiver sensor signal transduction histidine
kinase [Nostoc punctiforme PCC 73102]
Length = 364
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL +D D L L GYE+ + A V E P ++L D++MPE+DG E
Sbjct: 11 KILAVDDVFDNLLVLEAVLEDEGYEISLVEDSKIALAMVEESPPDIILLDVMMPEIDGYE 70
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + P + ++ +T + + + KPF +L V LL +K
Sbjct: 71 FTRRIRQNPALPFIPILLLTAHYQ-SSVVEGLDAGADDFIRKPFDPDELHARVRSLLRLK 129
Query: 122 N 122
+
Sbjct: 130 H 130
>gi|325523766|gb|EGD02019.1| two component transcriptional regulator [Burkholderia sp. TJI49]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A +R E F L++ D+++P +DG
Sbjct: 2 RILVVEDDAEIGAAVRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDVMLPGLDGFA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRNLRASGSTTPVLLLTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|307138638|ref|ZP_07497994.1| transcriptional regulatory protein YedW [Escherichia coli H736]
gi|331642590|ref|ZP_08343725.1| transcriptional activator protein CopR [Escherichia coli H736]
gi|331039388|gb|EGI11608.1| transcriptional activator protein CopR [Escherichia coli H736]
Length = 260
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + +G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVTDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|196228357|ref|ZP_03127224.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
gi|196227760|gb|EDY22263.1| two component transcriptional regulator, winged helix family
[Chthoniobacter flavus Ellin428]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL ED++ + RF+ L + V + +G + P+ LL+ D+++PE++G E
Sbjct: 2 RILLVEDEEKVARFITVGLKAERFAVDTARDGKTGLQMASLNPYDLLIVDLMLPEINGTE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + D+ ++ +T A++ + L+KPF +L+ + LL
Sbjct: 62 LIRRVRKQNTDVPIVVLTARDALSDKVANFESGADDYLTKPFAFAELLVRIKALLRR 118
>gi|170693170|ref|ZP_02884331.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
gi|170142168|gb|EDT10335.1| two component transcriptional regulator, winged helix family
[Burkholderia graminis C4D1M]
Length = 237
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q +I++ +D+ ++R L + L G+ V +G ++ EP+ LL+ D++M
Sbjct: 1 MDQANRIIVLDDEAELRNMLQRFLTGHGFHVRVVADGKQLDRYLQREPYDLLVLDLMMEP 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DG+ + RR L ++ +T L+KPF +LV + LL
Sbjct: 61 EDGLTICRRLRAEGQTLPILMLTAKGDPVDRVVGLETGADDYLAKPFLPDELVARIRALL 120
Query: 119 TIK 121
+
Sbjct: 121 RRQ 123
>gi|160937479|ref|ZP_02084840.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
BAA-613]
gi|158439548|gb|EDP17298.1| hypothetical protein CLOBOL_02370 [Clostridium bolteae ATCC
BAA-613]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++I +A+D+ +R + L GYEV + +G S ++ L++ DI+MP MD
Sbjct: 1 MAKRIYVADDELHIRTLIQTFLVNEGYEVETFEDGKSLFEAFHASCPDLIILDIMMPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + ++ ++ A + + KPF +LV V L
Sbjct: 61 GFALCTAIRRE-SRVPIIIVSAKDAPMDRVTGITLGSDDYMVKPFLPLELVARVKALFRR 119
>gi|170722109|ref|YP_001749797.1| two component transcriptional regulator [Pseudomonas putida W619]
gi|169760112|gb|ACA73428.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida W619]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 49/118 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL EDD + + L + + V G + R++ L++ D+++P +DG+++
Sbjct: 4 ILLVEDDSALSELIASYLQRNDFHVRVIARGDHVLEAFRQDKPDLVILDLMLPGIDGLQV 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R + L ++ +T ++KP R L+ V LL +
Sbjct: 64 CRLLRQESQSLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRSS 121
>gi|52081787|ref|YP_080578.1| two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|52787173|ref|YP_093002.1| CssR [Bacillus licheniformis ATCC 14580]
gi|52004998|gb|AAU24940.1| two-component response regulator [Bacillus licheniformis ATCC
14580]
gi|52349675|gb|AAU42309.1| CssR [Bacillus licheniformis ATCC 14580]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ I L ED++++ L K L G+ V S NG SA K+ + L + DI++P++D
Sbjct: 1 MSYSIYLVEDEENLNELLTKYLESEGWHVTSFLNGESARQKI-GQSPHLWILDIMLPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + DP++ V+FI+ A ++ +SKPF R+L+ V +LL +
Sbjct: 60 GYTLIKEIKNQDPEVPVIFISARDADIDRVLGLELGSSDYISKPFLPRELIIRVQKLLKL 119
>gi|56965403|ref|YP_177135.1| two-component response regulator [Bacillus clausii KSM-K16]
gi|56911647|dbj|BAD66174.1| two-component response regulator [Bacillus clausii KSM-K16]
Length = 238
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
KIL+ +D+ + + L L K + + G A +E+ F+L+L DI++P++ G
Sbjct: 5 KILIVDDEIGIVKLLEITLEKENFIHIDKATTGKEALQLTKEKTFNLILLDIMLPDISGF 64
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL D ++F++ A ++KPF+ +++ + +L +
Sbjct: 65 ELCTEIRRNT-DTPIIFVSSRATDFDKLTGLGIGGDDYITKPFNPLEVIARIKAILRRQ 122
>gi|324997181|ref|ZP_08118293.1| response regulator with CheY-like receiver domain protein and
winged-helix DNA-binding domain protein [Pseudonocardia
sp. P1]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+AED+ + FL K L AG+ V +G +D F L++ DI +P MD
Sbjct: 1 MSSRILVAEDEPRIASFLKKGLVAAGFGVTVVADGTGVHDHALTGGFDLMVLDIGLPGMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ RR + V+ +T +V ++KPF +L+ V L
Sbjct: 61 GFDVLRRLRAAGSAIPVIILTARDSVHDTVAGLTGGADDYMAKPFQFEELLARVQLRLER 120
>gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus
sp. CB0101]
Length = 248
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ +R + L G++V + +G + K +E L+++D++MP +DG
Sbjct: 23 RLLLVDDEPGLRTAVQAYLEDEGFQVTTAVDGEDGWAKAQELLPDLVISDVMMPRLDGYG 82
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDL 110
L R+ E V+F+T A + + KPF +L
Sbjct: 83 LLRKLRDDERLGGTPVIFLTAKGMTADRIEGFQAGCDDYIPKPFDPDEL 131
>gi|311109256|ref|YP_003982109.1| transcriptional activator protein IrlR 6 [Achromobacter
xylosoxidans A8]
gi|310763945|gb|ADP19394.1| transcriptional activator protein IrlR 6 [Achromobacter
xylosoxidans A8]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + L G+ V +G+ E + ++ D+++P DG
Sbjct: 2 RLLVVEDEPKTASHIKRGLTGLGFTVDLSGDGSEGLFLAIEHDYDAIILDVMLPGQDGYA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R+ P V+ ++ +V L KPF +L + LL +
Sbjct: 62 LLRQLRARKP-TPVLMLSARGSVDERVKGLRQGADDYLGKPFSFIELAARIQALLRRR 118
>gi|307294613|ref|ZP_07574455.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
gi|306879087|gb|EFN10305.1| two component transcriptional regulator, winged helix family
[Sphingobium chlorophenolicum L-1]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++LL EDD + LI + +EV +G A +E ++L D ++ +
Sbjct: 1 MARARMLLVEDDAALAELLIWHFKREDFEVSHTVDGEEALLLAQETVPDIVLLDWMVESL 60
Query: 60 DGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
GIE+ RR L+ ++ ++ +T ++KPF R+LV V +
Sbjct: 61 SGIEVCRRLRRLNGTANVPIIMLTARGEEEDRVRGLETGADDYVTKPFSPRELVARVGAV 120
Query: 118 LTI 120
L
Sbjct: 121 LRR 123
>gi|254786893|ref|YP_003074322.1| response regulator receiver domain-containing protein
[Teredinibacter turnerae T7901]
gi|237684839|gb|ACR12103.1| response regulator receiver domain protein [Teredinibacter turnerae
T7901]
Length = 222
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 49/117 (41%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ D+ ++ L ++ G A + R+ + ++ DI+MP +DG+ L
Sbjct: 3 VLLVEDNRDLAASVLDYLELQDFDCDYAERGDHALELCRDNTYDAMILDIMMPGIDGLSL 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ +T + L KPF L +L + + K
Sbjct: 63 CKTLREHGNNAPVIMLTARDTLDDKLAGFDAGADDYLVKPFDLPELAARLRAITKRK 119
>gi|238750772|ref|ZP_04612270.1| Nitrogen regulation protein NR(I) [Yersinia rohdei ATCC 43380]
gi|238710916|gb|EEQ03136.1| Nitrogen regulation protein NR(I) [Yersinia rohdei ATCC 43380]
Length = 470
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG V+ ++G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGLNCVTFDSGNQVLDALATQTPDVLLSDIRMPGMDGLTL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|228472850|ref|ZP_04057607.1| transcriptional regulatory protein ZraR [Capnocytophaga gingivalis
ATCC 33624]
gi|228275432|gb|EEK14209.1| transcriptional regulatory protein ZraR [Capnocytophaga gingivalis
ATCC 33624]
Length = 392
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 41/117 (35%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KILL ED+ +RR L L + YEV +NG A +K+RE + L+L DI MP+ DG
Sbjct: 3 KILLVEDEASIRRVLGSILSEEDKSYEVTEASNGQEAMEKIRETAYDLVLCDIKMPKKDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+E+ A L P L+V+ I+G + + ++KP L L+ V L
Sbjct: 63 LEVLLEAKALYPTLRVVMISGHGDLETAVQAMKMGAFDYIAKPPDLNRLLTTVRNAL 119
>gi|255037759|ref|YP_003088380.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
gi|254950515|gb|ACT95215.1| two component transcriptional regulator, winged helix family
[Dyadobacter fermentans DSM 18053]
Length = 236
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 4/121 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+ +DD D+ L L K GY V++ +NG A D + L+L DI+MP++DGIE
Sbjct: 12 KVLVVDDDSDIVELLEYNLTKEGYSVLTASNGKKAIDIAKAFVPDLILLDIMMPQLDGIE 71
Query: 64 LARRATELDPDLK---VMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R +PD+K ++F+T + + ++KP R L++ +N L
Sbjct: 72 -TGRILRQNPDIKNTYILFLTARSEEYSEVAAFEVGADDYITKPIKPRALMSRINALFRR 130
Query: 121 K 121
+
Sbjct: 131 E 131
>gi|224368210|ref|YP_002602373.1| sigma-54 dependent transcriptional regulator [Desulfobacterium
autotrophicum HRM2]
gi|223690926|gb|ACN14209.1| sigma-54 dependent transcriptional regulator [Desulfobacterium
autotrophicum HRM2]
Length = 455
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 64/119 (53%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +D+ + L + L + GY V+ ++ A D + ++ L+L+D+ MP MDGI
Sbjct: 2 EKILIVDDEKNYPTILGEVLKEEGYTPVTASSALMALDILNDDCIDLVLSDVNMPGMDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
EL + E+ P+ V+ +T + +V D+ + KPF LV + + ++I+
Sbjct: 62 ELLEKIKEITPNTPVIVMTAYGSVEKAVDAMHKGAYTYILKPFENDTLVAHIAKAISIQ 120
>gi|218130279|ref|ZP_03459083.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
gi|217987563|gb|EEC53891.1| hypothetical protein BACEGG_01867 [Bacteroides eggerthii DSM 20697]
Length = 1359
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+D++R +L + L Y V C+NG SA ++E L+++DI+MPEM G E
Sbjct: 1096 KILVVEDNDELREYLRRTL-AENYHVQVCSNGKSALYIIKEYFPDLIISDIMMPEMRGDE 1154
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ +T D + + KPF++ L + LL +
Sbjct: 1155 LCQVVKNDIATSHIPIILLTALNTDKNIIDGLQTGADEYIVKPFNIGILRATIANLLANR 1214
>gi|212695008|ref|ZP_03303136.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855]
gi|237727052|ref|ZP_04557533.1| two-component system response regulator [Bacteroides sp. D4]
gi|265750332|ref|ZP_06086395.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
gi|212662324|gb|EEB22898.1| hypothetical protein BACDOR_04546 [Bacteroides dorei DSM 17855]
gi|229433908|gb|EEO43985.1| two-component system response regulator [Bacteroides dorei
5_1_36/D4]
gi|263237228|gb|EEZ22678.1| two-component system response regulator [Bacteroides sp. 3_1_33FAA]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD ++R ++L K Y V + +A K+ + + +L DI++P+ G++
Sbjct: 2 KILLVEDDANLREVTQRSLEKERYVVEIAADYRTALQKIEDYDYDCILLDIMLPDGSGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + ++ V+ ++ ++ L KPFHL +L + ++
Sbjct: 62 LLEKLKKMHKRENVIILSAKDSIEDKVLGLDLGADDYLPKPFHLVELNARIKSVIRR 118
>gi|223938484|ref|ZP_03630377.1| response regulator receiver protein [bacterium Ellin514]
gi|223892903|gb|EEF59371.1| response regulator receiver protein [bacterium Ellin514]
Length = 134
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D+ D+ + L GYEVV+ +NG A + L++ D+++PEMD
Sbjct: 2 MRPRILIVDDEPDIVELVSFNLRAEGYEVVTASNGLDAVTQANSLIPDLIVLDLMLPEMD 61
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+ + + ++ +T + + ++KPF R+LV V + L
Sbjct: 62 GLSVCELLHRFPTTARIPIIMLTAWTSELSRLIGLDYGAEDYMTKPFSPRELVLRVKKTL 121
>gi|221068464|ref|ZP_03544569.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
gi|220713487|gb|EED68855.1| two component transcriptional regulator, winged helix family
[Comamonas testosteroni KF-1]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 52/119 (43%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++LL EDD MR L + L + G V +G SA + ++ D+ +P +DG
Sbjct: 4 NMQLLLVEDDSAMRTTLQRTLMRRGLNVDVAADGPSALAHWQTREPDAVVLDLSLPGLDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ RA L V+ +T V L+KPF L +L + LL
Sbjct: 64 LQVLERARALGLRTPVLILTARGTVGDRVMGLNAGADDYLAKPFDLDELEARLRALLRR 122
>gi|329909981|ref|ZP_08275168.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
gi|327546346|gb|EGF31363.1| multi-sensor hybrid histidine kinase [Oxalobacteraceae bacterium
IMCC9480]
Length = 732
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + R+ + LGK G V NG A + + + + L+L D +MP MDG E
Sbjct: 610 RVLVVEDTEMNRQLVRILLGKRGCIVEEAVNGQLALEALALKRYDLVLMDCMMPVMDGYE 669
Query: 64 LARRATELDPD-----LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
RR E + + + V+ +T A L+KPF L + +
Sbjct: 670 ATRRLREREAESGAARMPVIALTASAIEGDRERCLEAGMDDYLAKPFSAAQLTAVIEKW 728
>gi|298480391|ref|ZP_06998589.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
gi|298273672|gb|EFI15235.1| two-component system sensor histidine kinase/response regulator,
hybrid (one-component system) [Bacteroides sp. D22]
Length = 1511
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 3/115 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
LL ED+ ++R FL Y VV +G +K + ++++D++MPE DGIE+
Sbjct: 1238 LLVEDNQELREFLRSIFSPM-YRVVEAADGREGANKALKYLPDIIISDVMMPEKDGIEMT 1296
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R + ++ +T + + ++KPF L V LL
Sbjct: 1297 RELRADMTTSHIPIILLTAKTTIESKLEGLEYGADDYITKPFSATYLQARVENLL 1351
>gi|253576274|ref|ZP_04853605.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844401|gb|EES72418.1| two component transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD + +R + L + GY NG A + + E F L++ D++MPEMDG +L
Sbjct: 4 ILVVEDDVNTQRLICAVLQRGGYNSHVAGNGIEALNLMEERHFDLVVLDLMMPEMDGYQL 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ ++ +T + + ++KPF ++L+ + LL
Sbjct: 64 CEDLRSAGDNIPILMVTAAHDIKFKHNGFLVGTDDYMTKPFDEQELLFRIKALLRR 119
>gi|262202521|ref|YP_003273729.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262204066|ref|YP_003275274.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262085868|gb|ACY21836.1| response regulator receiver [Gordonia bronchialis DSM 43247]
gi|262087413|gb|ACY23381.1| response regulator receiver [Gordonia bronchialis DSM 43247]
Length = 244
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ D+ + L ++G+ V +G R ++++ D+ +P +DG+E+
Sbjct: 13 LVIEDEPDIAEVVADYLQRSGFTVTVAPDGQEGVAAARTASPAVVILDLGLPSLDGVEVC 72
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ + ++ +T A + L+KPF R+L+ ++ +L
Sbjct: 73 RQLRTFT-NAYIVMVTARADEVDTVVGLSVGADDYLTKPFRPRELMARIDAMLRR 126
>gi|240144544|ref|ZP_04743145.1| regulatory protein VanR [Roseburia intestinalis L1-82]
gi|257203433|gb|EEV01718.1| regulatory protein VanR [Roseburia intestinalis L1-82]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++R + L Y V +G + + + L + DI+MP MDG+ +
Sbjct: 6 ILIVEDDKEIRDGIEIFLKSQNYNVYKAADGVEGLEIIESKEIHLAIVDIMMPRMDGVTM 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E D V+ ++ + ++KPF +L+ VN L
Sbjct: 66 TLKLREHH-DFPVIMLSAKSEETDKVIGLNIGADDYVTKPFTPLELMARVNSQLRR 120
>gi|212704463|ref|ZP_03312591.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098]
gi|212672184|gb|EEB32667.1| hypothetical protein DESPIG_02519 [Desulfovibrio piger ATCC 29098]
Length = 523
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD +R+ + L GYE + + A + +RE+ ++ D+ MP MD
Sbjct: 1 MAE-ILIVDDDHHLRQGFQRLLDAEGYETRTAASAEEALNLMREKMPQCVVMDVRMPGMD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL-- 118
G+E +R L+ V+ +T ++ ++ + KPF + ++ + R L
Sbjct: 60 GLEALKRMRALEGCPPVVIMTAYSTTETAIEATRLGAFDYMLKPFDIPQVLELLQRALAA 119
Query: 119 ---TIKN 122
++
Sbjct: 120 GESQRRH 126
>gi|189466788|ref|ZP_03015573.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
17393]
gi|189435052|gb|EDV04037.1| hypothetical protein BACINT_03164 [Bacteroides intestinalis DSM
17393]
Length = 1339
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+D++R +L L Y + C++G A D V+E +++++DI+MPEM G E
Sbjct: 1078 KILIVEDNDELREYLRNTLSD-DYTIQVCSDGKQALDIVKEYMPNMIISDIMMPEMRGDE 1136
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L + + ++ +T + + + KPF++ L + +LT +
Sbjct: 1137 LCHKLKNDIETSHIPIILLTALNNDRNIIEGLKTGADEYIVKPFNIGILRATIANILTNR 1196
Query: 122 N 122
+
Sbjct: 1197 S 1197
>gi|158321721|ref|YP_001514228.1| two component transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158141920|gb|ABW20232.1| two component transcriptional regulator, winged helix family
[Alkaliphilus oremlandii OhILAs]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D+ ++ + L Y V NG A + REE L+L DI+MP +DG +
Sbjct: 4 ILVVDDEKEITDAIEVYLKNQNYNVFKAYNGIEALEVFREEEIHLVLIDIMMPRLDGTKT 63
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++F++ + ++KPF+ +L+ VN L
Sbjct: 64 TIKIRE-TSSVPIIFLSAKSEDMDKILGLNIGADDYITKPFNPMELLARVNSNLRR 118
>gi|156743120|ref|YP_001433249.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors
[Roseiflexus castenholzii DSM 13941]
gi|156234448|gb|ABU59231.1| adenylate/guanylate cyclase with GAF and PAS/PAC sensors
[Roseiflexus castenholzii DSM 13941]
Length = 971
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 4/125 (3%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M + IL +DD +RR L L AGY V + G A + L+L D+ +P
Sbjct: 1 MTELAHILAVDDDASVRRMLQILLTNAGYRVSVASTGEEALAYLELVTPDLVLMDVSLPG 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
+ G + R P + V+ ITG+ + L KP L +L+ V
Sbjct: 61 LSGQHVMERVKSDPDRPFIPVILITGYGDPEAKVAALDAGADDFLVKPVDLTELLARVRA 120
Query: 117 LLTIK 121
+L ++
Sbjct: 121 MLRLQ 125
>gi|329848851|ref|ZP_08263879.1| sensory box protein [Asticcacaulis biprosthecum C19]
gi|328843914|gb|EGF93483.1| sensory box protein [Asticcacaulis biprosthecum C19]
Length = 1358
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 5/121 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++LLAED L GY+ +G +A + R F L++ D+ MP+MDG
Sbjct: 1235 RRVLLAEDHPANALVATTLLEDYGYDCEVVPDGGTAIARWRTSAFDLVMMDVQMPDMDGY 1294
Query: 63 ELARRATEL-----DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
E R+ + P ++ +T A ++KPF +L ++ L
Sbjct: 1295 EATRQIRRIEVQETRPRTPILAMTAHALKGDRETCLQAGMDDYIAKPFDAAELEQKLRAL 1354
Query: 118 L 118
L
Sbjct: 1355 L 1355
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++LA+D+ DMR ++ + L ++VV+ +G A+ +R++ L+LTD++MP++DG
Sbjct: 610 RVVLADDNADMRDYIHRLLND-DFDVVAVTDGEQAWQAIRDQLPELVLTDVMMPKLDGFG 668
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R + L V+ ++ A ++ L KPF+ R+L+ +V L I
Sbjct: 669 LLERLRGDDATRRLPVIMLSARAGEEARVEALDAGVDDYLVKPFNARELLAKVRSQLQIA 728
Query: 122 N 122
+
Sbjct: 729 H 729
>gi|291518383|emb|CBK73604.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Butyrivibrio
fibrisolvens 16/4]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE---EPFSLLLTDIVMP 57
MN IL+ +D+ D+ L L G V + +NG A D + + L+L D++MP
Sbjct: 1 MNN-ILICDDEKDIISALRIYLESEGMNVTAASNGREAVDIMAGPNGKDMQLILMDVMMP 59
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
EMDGI + ++ ++ +T + A ++KPF+ +L+ V
Sbjct: 60 EMDGIAAMAEIRK-TSNVPIIMLTAKSEDADKVIGLTVGADDYVTKPFNPVELMARVKSQ 118
Query: 118 LTI 120
L
Sbjct: 119 LRR 121
>gi|262166699|ref|ZP_06034436.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
gi|262170378|ref|ZP_06038056.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
gi|261891454|gb|EEY37440.1| transcriptional regulator CpxR [Vibrio mimicus MB-451]
gi|262026415|gb|EEY45083.1| transcriptional regulator CpxR [Vibrio mimicus VM223]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V ++ L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLTEVLQYEGFEISEANDGEAGLAAVTDQ-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|238027804|ref|YP_002912035.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia glumae BGR1]
gi|237876998|gb|ACR29331.1| Two component transcriptional regulator, winged helix family
protein [Burkholderia glumae BGR1]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A + E F L++ D+++P +DG
Sbjct: 2 RILVVEDDAEIGEAIGSRLTRLGHAVDLERDGAAASSLLGVESFDLVVLDVMLPSLDGFS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRRLRAAGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|229822838|ref|ZP_04448908.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
gi|229787651|gb|EEP23765.1| hypothetical protein GCWU000282_00127 [Catonella morbi ATCC 51271]
Length = 234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++L+ ED+ ++ RF+ L GYE C++G + + + ++L D+++PE++G
Sbjct: 6 KHRVLIIEDEKNLARFVDLELQHEGYETAICHDGRKGLETALNQEWDVILLDLMLPELNG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+E+ RR + D ++ +T +V + KPF + +L+ + L
Sbjct: 66 LEVCRRIRPI-KDTPIIIMTARDSVIDRVSGLDQGADDYIVKPFAIEELLARLRALFRR 123
>gi|284035955|ref|YP_003385885.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
gi|283815248|gb|ADB37086.1| GAF sensor hybrid histidine kinase [Spirosoma linguale DSM 74]
Length = 1201
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMD 60
N+ +L+A+DD L KAL + V++ +G A K+ E P ++L D++MP+MD
Sbjct: 1078 NKTVLVADDDVRNIFSLSKALEQFNMTVIAALDGKEALQKLDENPGIDVVLLDMMMPQMD 1137
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E AR+ E +L V+ +T A + ++KP + L++ + L
Sbjct: 1138 GYETARKIREHYQWKNLPVIAVTAKAMTGDREKCIQAGASDYITKPVDIDQLISLLRVWL 1197
Score = 89.0 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 8/124 (6%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ IL+ EDD + + L+ K GY+ + G +L DI +P M G
Sbjct: 809 DKTILIVEDDPNFAKSLLDYARKKGYKGIVAVQGDEGLKLASVYNPLGILLDIQLPVMSG 868
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN---EVNR 116
E+ + V ++ L +S + KP L ++
Sbjct: 869 WEVMDALKANPKTRPIPVHIMSSH---KLKNESLLKGAIDFVDKPVAFEQLQEVFKKIEY 925
Query: 117 LLTI 120
+L
Sbjct: 926 VLNR 929
Score = 58.2 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/104 (16%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+L+ ED+ + L L +N D ++ + ++ D+ +P+
Sbjct: 932 KKVLIVEDNPKHAKALAYFLETFNITSELKSNITEGIDALKRKEVDCVILDMGVPDSKAY 991
Query: 63 ELARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
E + DP +L ++ TG + ++ K
Sbjct: 992 ETL-EVAKKDPGLENLPIIIFTGKSLSMSEELKIKKYADSIIVK 1034
>gi|182419810|ref|ZP_02951050.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237666867|ref|ZP_04526852.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376358|gb|EDT73940.1| regulatory protein VanR [Clostridium butyricum 5521]
gi|237658066|gb|EEP55621.1| regulatory protein VanR [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 3/120 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+AED+ D+R + + K + V ++G A D E L+L DI+MP+++
Sbjct: 1 MN--ILIAEDEKDIRDLISLHMKKENHNVFEASDGKEALDIFECEKIDLILVDIMMPKIN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI + ++ E + ++ IT + + + L KP +L V+ L
Sbjct: 59 GIAVIQKVRE-SSTIPIICITAMGSDSDKVLALGIGADDYLVKPISPIELCARVSSHLRR 117
>gi|168185636|ref|ZP_02620271.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
gi|169296321|gb|EDS78454.1| alkaline phosphatase synthesis transcriptional regulatory
proteinphoP [Clostridium botulinum C str. Eklund]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D++ + + L YEV++ G A + + + L++ D+++P++DG +
Sbjct: 2 KILLVDDEESLLNLVKINLMFENYEVITAECGKDAVELFQTQSPDLVVLDLMLPDIDGFQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E++ ++ ++ ++ + ++KPF R+L+ + +
Sbjct: 62 VIHEIQEINSEIPIVVLSAKNQINDRLLGLQLGADDYITKPFDSRELILRIRAISRR 118
>gi|167760996|ref|ZP_02433123.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
gi|167661375|gb|EDS05505.1| hypothetical protein CLOSCI_03394 [Clostridium scindens ATCC 35704]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ EDD D++ L L GY+V++ NG R+ L+L DI++P+MDG
Sbjct: 2 KTILIIEDDLDIQEMLQFFLEDQGYQVLAAENGIDGVTAFRKGNPDLILLDIMLPKMDGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ I+ + + + KP L ++ ++ ++
Sbjct: 62 TVCEMIRQE-SEIPVIMISALGSEEDQLKGFELQIDDYIPKPISLPIMMKKIEAVIRR 118
>gi|149910246|ref|ZP_01898891.1| Heavy metal response regulator [Moritella sp. PE36]
gi|149806715|gb|EDM66680.1| Heavy metal response regulator [Moritella sp. PE36]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 57/116 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + ++L + L ++G+ V +NG + E + L+L D+++P M+G +
Sbjct: 2 KILIIEDEVKLGKYLKQGLDESGFNVDLVDNGIDGLHQTTEMDYDLVLLDVMLPGMNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ +R L V+ +T VA +SKPF +L+ ++ L
Sbjct: 62 ILKRLRLKPKYLPVIMLTARDDVADRVQGLELGADDYMSKPFSFCELLARIHNQLR 117
>gi|197119422|ref|YP_002139849.1| PAS/GAF domain-containing sensor histidine kinase response
regulator [Geobacter bemidjiensis Bem]
gi|197088782|gb|ACH40053.1| sensor histidine kinase response regulator, PAS and GAF
domain-containing protein [Geobacter bemidjiensis Bem]
Length = 947
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+AEDD +R+ L L + + V +GA + R+ + L+L D+ MP MDG +
Sbjct: 828 RLLIAEDDATIRQVLATMLQRLQFSVDFAEDGAKVVEMWRQGEYDLILMDVQMPRMDGFQ 887
Query: 64 LARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
R E + + ++ +T A +SKP + ++ + +V
Sbjct: 888 ATRAIREQEQGGRIPIIAMTAHAMKEDQRRCLDAGMDDYISKPINFKECIEKV 940
>gi|221067401|ref|ZP_03543506.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
gi|220712424|gb|EED67792.1| two component heavy metal response transcriptional regulator,
winged helix family [Comamonas testosteroni KF-1]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ +L K L +GY+V N+G + F LL+ D+++P +DG
Sbjct: 2 RILIIEDEIKSAEYLKKGLTSSGYQVEVSNDGVDGLFVAQSSEFDLLILDVMLPGIDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR E + V+F+T +V L KPF +L+ V LL
Sbjct: 62 FIRRFRER-SQVPVLFLTARDSVEDRVKGLELGADDYLIKPFSYAELLARVRTLLRR 117
>gi|94264861|ref|ZP_01288636.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93454682|gb|EAT04947.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 391
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 4/122 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVRE-EPFSLLLTDIVMPEMDGI 62
++L+ +D + L + L G++V GA A R +P L+L D+VMPEMDG
Sbjct: 11 RVLVVDDQPPNIQLLAEVLAD-GHQVFIATGGAEALAICRAPQPPDLVLLDVVMPEMDGY 69
Query: 63 ELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR E + V+F+T + A +SKP+ + V L +
Sbjct: 70 EVCRRLKADEATSAIPVIFVTARDSAEEEVVGFAAGAVDYISKPYSPAIVRARVRTQLEL 129
Query: 121 KN 122
++
Sbjct: 130 QS 131
>gi|308172233|ref|YP_003918938.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7]
gi|307605097|emb|CBI41468.1| two-component response regulator [YclK] [Bacillus amyloliquefaciens
DSM 7]
gi|328552043|gb|AEB22535.1| two-component response regulator (YclK) [Bacillus amyloliquefaciens
TA208]
gi|328910307|gb|AEB61903.1| two-component response regulator [Bacillus amyloliquefaciens LL3]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + K G+E ++G Y + EE + L++ DI++P MDG+
Sbjct: 2 KILMIEDNISVCTMTEMFFFKEGFEAEFVHDGVEGYQRFTEEDWDLVILDIMLPSMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R+ E + ++ +T + ++KPF LV + ++
Sbjct: 62 ICRKIRE-TSSVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRR 117
>gi|304404343|ref|ZP_07386005.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
gi|304347321|gb|EFM13153.1| two component transcriptional regulator, winged helix family
[Paenibacillus curdlanolyticus YK9]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ IL+ ED+ + L GY+ G + + + + L++ D+++P DG
Sbjct: 2 KTILIIEDERTIAELQRDYLESHGYKADIEGRGDTGLRRALDGQYDLIILDLMLPNTDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ RR + D+ ++ I+ ++KPF +LV V L
Sbjct: 62 EICRRIRQE-ADIPIIMISAKKEEIDKIRGLGLGADDYMTKPFSPSELVARVKAHLAR 118
>gi|291547625|emb|CBL20733.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED++ + L +G+EV N G + + +E F L++ D+++PE+D
Sbjct: 1 MS-RILIIEDEEAIADLEKDYLELSGFEVEIENRGDTGLVRAMKEEFDLIILDLMLPEVD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ R+ E + ++ ++ ++KPF +LV V +
Sbjct: 60 GFDICRQVREE-KNTPIIMVSAKKDDIDKIRGLGLGADDYMTKPFSPSELVARVKAHMER 118
Query: 121 KN 122
N
Sbjct: 119 YN 120
>gi|270295880|ref|ZP_06202080.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D20]
gi|270273284|gb|EFA19146.1| two-component system sensor histidine kinase/response regulator
[Bacteroides sp. D20]
Length = 1354
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ ED+ D+R ++ ++LG +++++ +G+ + +E +++++DI+MP MDGI+L
Sbjct: 1105 LVVEDNQDIREYIRQSLGD-DFDILTAEDGSRGWTLAQERIPNIIVSDIMMPVMDGIQLC 1163
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + + V+ +T ++ + L+KPF + L + +N LL +
Sbjct: 1164 RLVKDDIRTSHIPVILLTAKDSLHDKEEGYTAGADSYLTKPFSAKLLHSRINNLLEAR 1221
>gi|257093200|ref|YP_003166841.1| winged helix family two component transcriptional regulator
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257045724|gb|ACV34912.1| two component transcriptional regulator, winged helix family
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 250
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 51/118 (43%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KILL +DD ++R L LG+ G++ + + ++ LL+ D+++P DG+
Sbjct: 12 KKILLIDDDSELRPLLATYLGRHGFDTLLLPDTRQLDAFLQRYQPHLLVLDLMLPGEDGL 71
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR L V+ +T L KPF R+LV + +L
Sbjct: 72 AACRRLRARGETLPVIMLTARDEPVDRVIGLEMGADDYLGKPFDPRELVARIEAVLRR 129
>gi|256828552|ref|YP_003157280.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
gi|256577728|gb|ACU88864.1| PAS/PAC sensor hybrid histidine kinase [Desulfomicrobium baculatum
DSM 4028]
Length = 869
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N ++LLAEDD+ + + K L KAGY V NG A D + F +L DI MP M G
Sbjct: 740 NGRVLLAEDDEVTQFAVRKLLEKAGYTVSIARNGEEALDLLGAHDFDAVLMDIQMPVMGG 799
Query: 62 IELARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
IE R E + ++ +T +A ++KP + +L + R
Sbjct: 800 IEATRLIRSSATPEAKRSIPIIALTAYAMAGDREKFLDAGMNDYIAKPVQVVELKKALER 859
Query: 117 L 117
Sbjct: 860 A 860
>gi|257790923|ref|YP_003181529.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
gi|257474820|gb|ACV55140.1| two component transcriptional regulator, winged helix family
[Eggerthella lenta DSM 2243]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL +DD+ +R L + LGK G++V ++ + + L+L D++MP DG E
Sbjct: 3 RILAVDDDEAIRNLLGRVLGKDGHDVRCAACAEEVLA-LKLDRYDLVLLDVMMPGTDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L R D ++F+T ++ L KPF +L V L +
Sbjct: 62 LCRAIRG-SVDAPIVFLTARSSEDDAVYGLGLGADDYLRKPFGAAELRARVAAHLRRE 118
>gi|220918717|ref|YP_002494021.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter dehalogenans 2CP-1]
gi|219956571|gb|ACL66955.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter dehalogenans 2CP-1]
Length = 322
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M Q+ IL+ +D +L++ L + GY+V + +G A KVR EP L+L D+++P+
Sbjct: 1 MPQRAQILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEPPDLVLLDMILPD 60
Query: 59 MDGIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG+E+ R D + V+ ++ + + L+KPF +++
Sbjct: 61 MDGLEVLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAA 120
Query: 117 LLTIK 121
+L IK
Sbjct: 121 MLRIK 125
>gi|220924050|ref|YP_002499352.1| winged helix family two component transcriptional regulator
[Methylobacterium nodulans ORS 2060]
gi|219948657|gb|ACL59049.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R ++ AL +AGY V +G EP+ ++ D+ +P+ DG+
Sbjct: 2 RLLVVEDDRDLNRQVVTALEQAGYAVDKAFDGEEGAFLGETEPYDCIILDMGLPKQDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+ +T + + ++KPFH+ +L+ V +L
Sbjct: 62 VLSGWRRAQVKTPVIILTARDRWSDKVNGFDAGADDYVTKPFHMEELLARVRAILRR 118
>gi|254285882|ref|ZP_04960844.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
gi|150424064|gb|EDN16003.1| transcriptional regulator CpxR [Vibrio cholerae AM-19226]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|319647703|ref|ZP_08001921.1| CssR protein [Bacillus sp. BT1B_CT2]
gi|317390044|gb|EFV70853.1| CssR protein [Bacillus sp. BT1B_CT2]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ I L ED++++ L K L G+ V S NG SA K+ + L + DI++P++D
Sbjct: 1 MSYSIYLVEDEENLNELLTKYLESEGWHVTSFLNGESARQKI-GQSPHLWILDIMLPDID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + DP++ V+FI+ A ++ +SKPF R+L+ V +LL +
Sbjct: 60 GYTLIKEIKNQDPEVPVIFISARDADIDRVLGLELGSSDYISKPFLPRELIIRVQKLLKL 119
>gi|300871520|ref|YP_003786393.1| response regulatory protein AtoC [Brachyspira pilosicoli 95/1000]
gi|300689221|gb|ADK31892.1| response regulatory protein, AtoC [Brachyspira pilosicoli 95/1000]
Length = 446
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 60/119 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D+ ++R + K+L GYEVV+ NG + V + L++TD+ MPE G E
Sbjct: 3 KILVIDDEKNIRDGIKKSLEYEGYEVVTAENGEKGIETVYKGGIDLVITDLKMPEKTGEE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
E D + V+ +TG + D ++KPF++ ++ + R L KN
Sbjct: 63 FLHDILEFDKHIPVIILTGHGNIETAVDMMRLGAYDFMTKPFNIDKMLLIIARALENKN 121
>gi|268319166|ref|YP_003292822.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
gi|262397541|emb|CAX66555.1| two-component system response regulator [Lactobacillus johnsonii
FI9785]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 55/112 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED++ + R L+ A+ Y V NG A + R+ + +++ DI+MP MDGI
Sbjct: 2 KILIAEDEEQLSRVLVAAMQSVNYGVDPVFNGRDAVELARKNSYDVIILDIMMPVMDGIT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ + V+ +T A V L+KPF L++L+ +
Sbjct: 62 ALKEIRKSGDKTYVLMLTAKAEVDDRVTGLDSGADDYLTKPFSLKELLARLR 113
>gi|163788577|ref|ZP_02183022.1| two-component system, transcriptional regulatory protein
[Flavobacteriales bacterium ALC-1]
gi|159875814|gb|EDP69873.1| two-component system, transcriptional regulatory protein
[Flavobacteriales bacterium ALC-1]
Length = 150
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/114 (29%), Positives = 56/114 (49%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KILL EDD + L L Y+VV NG ++K +++ + L + D++MP DG
Sbjct: 5 NKKILLVEDDPNFGTVLKDYLMMNDYDVVHAKNGMEGFEKFKKDDYDLCILDVMMPYKDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
LA+ E + D+ ++F+T A L+KPF L+ ++
Sbjct: 65 FTLAKEIREKNTDVPIIFLTAKAMKEDVLKGYKVGADDYLNKPFDSEVLLMKIK 118
>gi|329939486|ref|ZP_08288822.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
gi|329301715|gb|EGG45609.1| two-component system response regulator [Streptomyces
griseoaurantiacus M045]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLESFRSRRPDIALLDVMVPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + ++ V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-SNVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|299534866|ref|ZP_07048195.1| response regulator [Lysinibacillus fusiformis ZC1]
gi|298729711|gb|EFI70257.1| response regulator [Lysinibacillus fusiformis ZC1]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AEDD+ +R+ ++ + K ++V + +NG A + + + + L++ D +MPE+ GI+
Sbjct: 2 KILIAEDDNRLRKNIVHIIQKEFHQVDAVDNGQHALEYILFQTYDLVILDWMMPELSGID 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + A + ++ +T + KPF + +L+ + +L KN
Sbjct: 62 VCKEARRNGYEGGILILTAKDDSNDIILGLDAGADDYVVKPFKMEELLARIRAILRRKN 120
>gi|296393679|ref|YP_003658563.1| transcriptional regulator [Segniliparus rotundus DSM 44985]
gi|296180826|gb|ADG97732.1| two component transcriptional regulator, winged helix family
[Segniliparus rotundus DSM 44985]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/105 (31%), Positives = 52/105 (49%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +DD +R L ++L GY V + NGA A +V E ++ D++MP +DG+E+
Sbjct: 3 ILVVDDDRAVRDSLRRSLLFNGYAVRTAENGAEALSQVLECRPDAMVLDVMMPGLDGLEV 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRD 109
RR DL ++ +T V+ L KPF L +
Sbjct: 63 CRRLRSAGDDLPILVLTARDTVSERVAGLDAGADDYLPKPFALEE 107
>gi|268611303|ref|ZP_06145030.1| two component transcriptional regulator, winged helix family
protein [Ruminococcus flavefaciens FD-1]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++IL+ +DD D+ + + L GYE + + A+D + + F L+L DI +P+ +G
Sbjct: 3 KKRILIVDDDTDLSFIISEMLEGCGYESLRAASAEEAFDILSHKSFHLILLDINLPDSEG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
E+ R+ ++ D+ V+F + A S L KP+ +++L++ VN L+
Sbjct: 63 FEICRQLRKV-SDVPVIFASARTAEDDRIRSFDIGGDDYLPKPYSMKELLSRVNALIRR 120
>gi|306823610|ref|ZP_07456985.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|309802985|ref|ZP_07697086.1| sensory transduction protein RegX3 [Bifidobacterium dentium
JCVIHMP022]
gi|304553317|gb|EFM41229.1| response regulator [Bifidobacterium dentium ATCC 27679]
gi|308220452|gb|EFO76763.1| sensory transduction protein RegX3 [Bifidobacterium dentium
JCVIHMP022]
Length = 234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ ED++ R L+ L + GY+V + G + + L+L D+++P +D
Sbjct: 1 MT-RILIVEDEESYREPLVYQLTREGYDVSAAATGEDGLELFTQGGVDLVLLDLMLPGLD 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L RR E + ++ +T +A ++KP+ R+L+ V +L
Sbjct: 60 GTALCRRIREQ-SRVPIIMLTAKSAEIDKVVGLEIGADDYVTKPYSFRELLARVRAVLRR 118
>gi|291546162|emb|CBL19270.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus sp. SR1/5]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AEDD ++R+ L K GY V ++G A D + ++ + L+++DI+MP MDG E
Sbjct: 3 KILIAEDDLELRQLFRHVLLKNGYTVKGVSDGQEALDALEKDYYDLIISDIMMPNMDGYE 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R + + V+ +T A + + KP ++ +LV V LL
Sbjct: 63 LVRSLRDAGDSIPVLMVTAKDAFDDMRMGFLSGSDDYMVKPVNINELVLRVGALLRR 119
>gi|258625182|ref|ZP_05720098.1| response regulator rpfG [Vibrio mimicus VM603]
gi|258582557|gb|EEW07390.1| response regulator rpfG [Vibrio mimicus VM603]
Length = 377
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 5/125 (4%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M++ IL+ +D+ + R L L Y ++ GA A ++ L+L DI+MPE
Sbjct: 2 MSELETILIVDDNPENRALLAGLLKPH-YRLLVATGGAQALTICHKQKPDLVLLDIMMPE 60
Query: 59 MDGIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
MDG E+ +R D+ V+F+T + + + KP L+
Sbjct: 61 MDGYEVCQRMRADPELQDIPVIFLTAKSQIEDEQRGFDVGAVDYIQKPISPPILLVRTRT 120
Query: 117 LLTIK 121
L ++
Sbjct: 121 HLRLR 125
>gi|300024440|ref|YP_003757051.1| two component transcriptional regulator, winged helix family
[Hyphomicrobium denitrificans ATCC 51888]
gi|299526261|gb|ADJ24730.1| two component transcriptional regulator, winged helix family
[Hyphomicrobium denitrificans ATCC 51888]
Length = 230
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D+ + RFL +L AGYEVV G A + ++L D+ +P+MDG +
Sbjct: 5 RILVVDDEPQILRFLKPSLTAAGYEVVVATTGKEALKAAATQSPDIILLDLGLPDMDGKD 64
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R ++ ++ + + ++KPF + +L + L
Sbjct: 65 VIRELRG-WSKTPILVLSARDRESEKIAAFDLGADDYVNKPFGIGELTARLRTALR 119
>gi|239626319|ref|ZP_04669350.1| response regulator receiver protein [Clostridiales bacterium
1_7_47_FAA]
gi|239516465|gb|EEQ56331.1| response regulator receiver protein [Clostridiales bacterium
1_7_47FAA]
Length = 234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/120 (26%), Positives = 55/120 (45%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN +ILL EDD ++ + L +AGYE C G A+ E P+ +++ D ++P+MD
Sbjct: 5 MNMRILLVEDDRELSGTIKLQLEQAGYETDCCGQGQEAFYYASEYPYDVIILDRMLPQMD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + + +D V+ T V D L KP+ +L+ + +
Sbjct: 65 GLSVLQGLRRMDITTPVIITTALDGVNDRIDGLDAGADDYLVKPYAAGELLARIRAVTRR 124
>gi|229826144|ref|ZP_04452213.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
49176]
gi|229789014|gb|EEP25128.1| hypothetical protein GCWU000182_01516 [Abiotrophia defectiva ATCC
49176]
Length = 257
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMD 60
KIL+ +DD ++ + L GYEV N+ + ++ EE SL + DI+MP MD
Sbjct: 24 KAKILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMD 83
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ + ++ E + V+ ++ + ++KPF+ +L V L
Sbjct: 84 GLSMVKKIRE-TSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRR 142
>gi|297196443|ref|ZP_06913841.1| two-component system sensor kinase [Streptomyces pristinaespiralis
ATCC 25486]
gi|197722270|gb|EDY66178.1| two-component system sensor kinase [Streptomyces pristinaespiralis
ATCC 25486]
Length = 1166
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDG 61
+ +L+ +DD L L G +V+ NG D + E P L+L D++MPEMDG
Sbjct: 1037 RTVLVVDDDARNLFALSGILELHGIQVLHAENGRKGIDALAEHPDIDLILMDVMMPEMDG 1096
Query: 62 IELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ DL ++ +T A S A + ++KP DL+ V R L
Sbjct: 1097 YAATAEIRRMPAHADLPIVTVTAKAMPGDREKSLAAGASDYVTKPVDADDLIACVRRWLN 1156
Query: 120 IKN 122
K+
Sbjct: 1157 PKS 1159
>gi|154483735|ref|ZP_02026183.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
27560]
gi|149735226|gb|EDM51112.1| hypothetical protein EUBVEN_01439 [Eubacterium ventriosum ATCC
27560]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N K+L+ +D+ + + Y++++ +G A KV L+L DI MP MDG
Sbjct: 4 NPKLLIVDDERGIVDMIQSYFQTQ-YDILTAYSGQEALKKV-ACKPDLILLDINMPGMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + ++ E ++F+T + + KPF L +L + L +
Sbjct: 62 LTVCQQIRE-HIACPILFLTARIESSDKIIGFQAGADDYIVKPFDLDELGARIAAHLRRE 120
>gi|77359900|ref|YP_339475.1| response regulator [Pseudoalteromonas haloplanktis TAC125]
gi|76874811|emb|CAI86032.1| putative response regulator [Pseudoalteromonas haloplanktis TAC125]
Length = 549
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D R L + L + GY V NG +A + + P ++L D+VMP MDG E
Sbjct: 3 HILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKILSQTPIDIVLLDVVMPIMDGFE 62
Query: 64 LARRATELDPDL--KVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
A+ + D+ ++FIT A A + KPF L ++ +
Sbjct: 63 TAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKVILHAKIKAHCRTR 122
>gi|126439551|ref|YP_001057860.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
gi|126219044|gb|ABN82550.1| DNA-binding response regulator [Burkholderia pseudomallei 668]
Length = 247
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P+M G+E
Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPKMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 118
>gi|331677849|ref|ZP_08378524.1| transcriptional activator protein CopR [Escherichia coli H591]
gi|331074309|gb|EGI45629.1| transcriptional activator protein CopR [Escherichia coli H591]
Length = 260
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|331091977|ref|ZP_08340809.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402876|gb|EGG82443.1| hypothetical protein HMPREF9477_01452 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 250
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KI++ +DD D+R+ L L YEV +NG A + + +E L++ DI+MPE DG+
Sbjct: 14 KIMVVDDDADIRQALRVLLETENYEVSEADNGEMALELL-DETVDLMILDIMMPEKDGLS 72
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R E ++F+T L+KPF +++ V+ +L +
Sbjct: 73 TCREVREKY-TFPILFLTAKTTENDKYVGFLSGGDDYLTKPFSKMEVLTRVSAMLRRYH 130
>gi|325272774|ref|ZP_08139118.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
gi|324102081|gb|EGB99583.1| two component transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD + + L G+EV +GA A ++ + L++ D+++P DG+
Sbjct: 7 RILIVEDDPRLAELTAEYLQANGFEVAVEGDGARAVRRIVDSQPDLVILDLMLPGEDGLS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RRA P ++ +T + + KP R L+ + LL
Sbjct: 67 ICRRARNQYPG-PILMLTARSDELDQIHGLDLGADDYVCKPVRPRLLLARIQALLRR 122
>gi|315647320|ref|ZP_07900433.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
gi|315277522|gb|EFU40851.1| two component transcriptional regulator, winged helix family
protein [Paenibacillus vortex V453]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN + IL+ ED+ D+ R + L G+ N + +VR ++ D+ +P+
Sbjct: 1 MNSPKTILIIEDEQDISRIVNDYLRVQGFSAFIAENASDGLREVRNRQPDFIILDLTLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
DGIE+ R+ L ++ ++ ++ + ++KPF L +LV V L
Sbjct: 61 ADGIEVCRKLRTLTA-APILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHL 119
Query: 119 TI 120
Sbjct: 120 RR 121
>gi|313204197|ref|YP_004042854.1| two component transcriptional regulator, winged helix family
[Paludibacter propionicigenes WB4]
gi|312443513|gb|ADQ79869.1| two component transcriptional regulator, winged helix family
[Paludibacter propionicigenes WB4]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL EDD+++ L + L GY+ +G + Y + + L + D++MP+ DG
Sbjct: 7 KILLCEDDENLGMLLREYLQTKGYDADLQPDGEAGYRAFSKNKYDLCVFDVMMPKKDGFA 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
LA L+ ++ ++F+T + LSKPF + +L+ + +L
Sbjct: 67 LAADVRSLNSEVPIIFLTAKSMKEDILQGFKLGADDYLSKPFSMEELLYRIESILRR 123
>gi|302187377|ref|ZP_07264050.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
syringae pv. syringae 642]
Length = 230
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQTATILVIDDEPQIRKFLRISLASQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + + LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|300022887|ref|YP_003755498.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
51888]
gi|299524708|gb|ADJ23177.1| GAF sensor hybrid histidine kinase [Hyphomicrobium denitrificans ATCC
51888]
Length = 1897
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+K+LL +DD L L + G V++ G A + + S++L DI+MPEMDG
Sbjct: 1778 RKVLLVDDDARNIFALSSLLERRGMNVLTATTGLEAIETLNSTDVSIVLMDIMMPEMDGY 1837
Query: 63 ELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R D L ++ +T A + L+KP L++ + L
Sbjct: 1838 QTMQRIRGSDKHQRLPIIALTAKAMKGDREKCLEAGASDYLAKPVDTEQLLSALRMWLHR 1897
Score = 87.1 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+++L+ +DD R + + L E+ + +GA A K++E P ++ D+ +P+M G
Sbjct: 1632 KRLLIVDDDSAERMSIAELLKNDDVEIFTAADGADALKKLKENPIDCVVLDLKLPDMSGF 1691
Query: 63 ELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPF-HLRDLVN 112
E+ + D+ V+ TG V+ K L++
Sbjct: 1692 EILEQMCGSPAMRDIPVVVFTGRELSNEEDHKIRQLARTVVVKGVESPERLLD 1744
Score = 84.4 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ EDD + LI A K G++ + C+ G A + + + DI +P++ G +
Sbjct: 1513 LIVEDDPRYAKILIDAARKTGFKGIVCHRGVDALSLATDYNPTAISLDIHLPDILGWSVL 1572
Query: 66 RRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ L + V +T A L+KP L + + R+
Sbjct: 1573 SQLKHNPLTRHIPVQVVT---LDDDRHHGLARGAFSYLTKPLETDALKSALRRI 1623
>gi|299133545|ref|ZP_07026739.1| two component transcriptional regulator, winged helix family
[Afipia sp. 1NLS2]
gi|298591381|gb|EFI51582.1| two component transcriptional regulator, winged helix family
[Afipia sp. 1NLS2]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 54/117 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R L AL AGY V +G + EP+ ++ DI +P+MDGI
Sbjct: 7 RLLVVEDDPDLNRQLTAALSDAGYVVDRAFDGEEGHFLGDNEPYDAVVLDIGLPKMDGIS 66
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + ++KPFHL +++ + LL
Sbjct: 67 VLESWRRNKRVMPVLILTARDRWSDKVQGFDAGADDYVAKPFHLEEVLARIRALLRR 123
>gi|291561767|emb|CBL40567.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [butyrate-producing
bacterium SS3/4]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +DD + + L G+ V+ +G A + + + +L++ D++MP +DGI
Sbjct: 3 TILVCDDDKQIVEAINIYLTGEGFNVIKAYDGYEALELLEKNEVNLMIVDVMMPGLDGIR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + ++ ++ + ++KPF+ +LV V L
Sbjct: 63 TTLKVRE-TSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118
>gi|323525403|ref|YP_004227556.1| winged helix family two component transcriptional regulator
[Burkholderia sp. CCGE1001]
gi|323382405|gb|ADX54496.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. CCGE1001]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 1/121 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++L ED+ +RRF+ AL G V G + L++ D+ +P+ DG
Sbjct: 5 SITVVLIEDEKQIRRFVRAALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLPDTDG 64
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+++ R ++ V+ ++ + + L+KPF + +L+ + L +
Sbjct: 65 LDVIRELRG-WSEMPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHLRRR 123
Query: 122 N 122
N
Sbjct: 124 N 124
>gi|297588714|ref|ZP_06947357.1| response regulator [Finegoldia magna ATCC 53516]
gi|297574087|gb|EFH92808.1| response regulator [Finegoldia magna ATCC 53516]
Length = 239
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N +IL+ EDD +R + L + NG+ A + ++ D+ +P++DG
Sbjct: 4 NTRILIIEDDRAVRNLISNTLKINRFNYDLAVNGSEALLLFTTNKYDIVFVDLGLPDIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
I+L ++ E ++ I+ + ++ L+KPF++ +L+ V +
Sbjct: 64 IDLIKKFRE-FSTTPIIVISARSNDEDKIEALDAGADDFLTKPFNVEELLARVRSTIRR 121
>gi|226303939|ref|YP_002763897.1| OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
gi|226183054|dbj|BAH31158.1| probable OmpR family two-component response regulator [Rhodococcus
erythropolis PR4]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/122 (22%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ ++IL+ +DD + L + L +G++ + +G SA V ++ + L+ D+ MP
Sbjct: 1 MSTRERILIVDDDAKVLNSLERGLRLSGFDTATAVDGRSALSSVNKQCPAALVLDVNMPG 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG+ + + ++ + ++ ++V L+KPF L +LV + LL
Sbjct: 61 LDGVGVVTALRAIGNEVPICVLSARSSVGDRIAGLEAGADDYLTKPFELAELVARLRALL 120
Query: 119 TI 120
Sbjct: 121 RR 122
>gi|187732444|ref|YP_001879602.1| transcriptional regulator YedW [Shigella boydii CDC 3083-94]
gi|187429436|gb|ACD08710.1| heavy metal response regulator [Shigella boydii CDC 3083-94]
Length = 260
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ + ++ + L +AGY + + ++G ++ ++L++ DI++P MDG +
Sbjct: 39 KILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQ 98
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + V+ +T +V L KPF +L+ V L +
Sbjct: 99 ILQTLRTA-KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHH 156
>gi|86157260|ref|YP_464045.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85773771|gb|ABC80608.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 466
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/116 (31%), Positives = 59/116 (50%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD +R L + L G EV +G +A +K+ +PF L+LTD+ MP +DG+
Sbjct: 12 RVLVVDDDPGVRYTLREILASEGLEVEEAADGEAALEKLGAQPFPLVLTDLRMPRLDGMA 71
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
L RR T P +V+ IT + ++ KPF +L+ V R +
Sbjct: 72 LLRRITAGHPATRVVVITAHGSERQAVEAVKAGAYDYFKKPFETEELLAVVRRAVE 127
>gi|305664862|ref|YP_003861149.1| C4-dicarboxylate transport transcriptional regulatory protein
[Maribacter sp. HTCC2170]
gi|88707984|gb|EAR00223.1| C4-dicarboxylate transport transcriptional regulatory protein
[Maribacter sp. HTCC2170]
Length = 387
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+ KIL+ ED+ +RR L+K L + Y+V +G + ++ + L+L DI MP+
Sbjct: 1 MS-KILVVEDESAIRRVLVKILSEESDSYQVEEAEDGLRGIEAIKNNDYDLVLCDIKMPK 59
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG+E+ A+++ P++ + I+G + ++ +SKP L L+ V L
Sbjct: 60 MDGVEVLEAASKIKPEIPFIMISGHGDLDTAVNTMRLGAFDYISKPPDLNRLLTTVRNAL 119
Query: 119 TIK 121
K
Sbjct: 120 DRK 122
>gi|254248175|ref|ZP_04941495.1| Response regulator [Burkholderia cenocepacia PC184]
gi|124874676|gb|EAY64666.1| Response regulator [Burkholderia cenocepacia PC184]
Length = 347
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + FL L GY V+ +G A ++ ++L D +MP+MDG E
Sbjct: 37 ILIVDDTPENLAFLSDTLQARGYVVIVALSGEDALKRLARVTPDVVLLDAMMPDMDGFET 96
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + L V+F+T ++KP +L + +
Sbjct: 97 CVRIKQDGRHEHLPVIFMTALTESEHVVRGFRVGGIDYVTKPVQPEELCARIGAHVRR 154
>gi|150016009|ref|YP_001308263.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149902474|gb|ABR33307.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
N+KIL+ +D++ + L L AGYEV+S NNG A + E SLLL D+++P MDG
Sbjct: 3 NEKILIVDDEEHIVELLHFNLVNAGYEVLSANNGIDAVKIAKAEKPSLLLLDLMLPGMDG 62
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + ++ +T ++KPF +R+L+ V +L
Sbjct: 63 FDVCKEIKRDSEMKKTSIIMLTAKGEELDKILGLELGADDYITKPFSVRELLARVKAVLR 122
Query: 120 I 120
Sbjct: 123 R 123
>gi|332289758|ref|YP_004420610.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
UMN179]
gi|330432654|gb|AEC17713.1| DNA-binding transcriptional regulator CpxR [Gallibacterium anatis
UMN179]
Length = 239
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +DD + L + L +EV +NG A + + + L+L DI+MP++ GIE
Sbjct: 3 KILLVDDDVEFTSLLAEVLAMESFEVEVVHNGEDALHTL-DLSYDLILLDIMMPKLGGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + V+ +T LSKPF+ R+LV + +L
Sbjct: 62 TLKQIRQKY-TTPVLMLTARGDDVDRILGLELGADDYLSKPFNDRELVARIKAILRR 117
>gi|315655993|ref|ZP_07908891.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
gi|315490057|gb|EFU79684.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333]
Length = 257
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KIL+ +DD + + L + YE C +GA A DK RE LLL D+++P MD
Sbjct: 31 MSAKILVVDDDQALSEMIGIILESSAYEPSFCADGAKAVDKFREVEPDLLLLDLMLPGMD 90
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
GIE+ RR E ++ ++ +T + + KPF ++L+ V L
Sbjct: 91 GIEICRRIRE-FSNVPIIMLTAKSDTTDVVAGLEAGADDYIPKPFKPKELLARVAARLR 148
>gi|294627682|ref|ZP_06706264.1| two-component system regulatory protein, OmpR family [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
gi|292598034|gb|EFF42189.1| two-component system regulatory protein, OmpR family [Xanthomonas
fuscans subsp. aurantifolii str. ICPB 11122]
Length = 259
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD D+R+ + + L GY+V N A + + L++ D++MP DG+
Sbjct: 28 VLVVDDDPDLRKLIGEFLSAHGYQVDMAGNVAEMRSVMAQRRPDLIVLDVMMPGEDGLSA 87
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
AR V+ ++ L+KP + R+L+ V LL
Sbjct: 88 ARALASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPRELLARVRALLRR 143
>gi|270290038|ref|ZP_06196264.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Pediococcus acidilactici 7_4]
gi|270281575|gb|EFA27407.1| two-component system, OmpR family, phosphate regulon response
regulator OmpR [Pediococcus acidilactici 7_4]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L + GYE VS NG A K+ +P L++ DI+MPEMDG+
Sbjct: 2 KILVVDDDKEIVELLDIYIKNEGYEPVSAYNGKEALTKLHTDPDIKLMILDIMMPEMDGM 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ R + D +L ++ ++ ++KPF+ +++ V LL
Sbjct: 62 QVVREVRK-DSELPILMLSAKTDDMDKIKGLLTGADDYVTKPFNPLEIMARVKSLLRR 118
>gi|261211256|ref|ZP_05925545.1| transcriptional regulator CpxR [Vibrio sp. RC341]
gi|260839757|gb|EEX66368.1| transcriptional regulator CpxR [Vibrio sp. RC341]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+++ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTSLLTEVLQYEGFDISEANDGEAGLAAVSDE-VDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|158336238|ref|YP_001517412.1| two component LuxR family transcriptional regulator [Acaryochloris
marina MBIC11017]
gi|158306479|gb|ABW28096.1| two component transcriptional regulator, LuxR family [Acaryochloris
marina MBIC11017]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +L+ +D+ +R + L GY V+S G A+ V++ LL+TDI MP+MD
Sbjct: 1 MPLTVLIVDDEPGIRLAVTDYLEAVGYTVISAATGKQAWQLVQQYRPHLLVTDIRMPQMD 60
Query: 61 GIELARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G EL + + L V+++T + L+KPF+L +L + LL
Sbjct: 61 GYELVKLVRQQPAFRLLPVIYLTECSQTQERIRGYKLGCDAYLAKPFNLEELAAVIRNLL 120
Query: 119 TI 120
Sbjct: 121 DR 122
>gi|94988366|ref|YP_596467.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
gi|94992248|ref|YP_600347.1| two-component response regulator [Streptococcus pyogenes MGAS2096]
gi|94541874|gb|ABF31923.1| two-component response regulator [Streptococcus pyogenes MGAS9429]
gi|94545756|gb|ABF35803.1| Two-component response regulator [Streptococcus pyogenes MGAS2096]
Length = 222
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILLAED+ M L A+ GY+V NG A DK ++ + +++ DI+MP GIE
Sbjct: 2 KILLAEDEWQMSNVLTTAMTHQGYDVDVVFNGQEAIDKAKDNAYDIMILDIMMPIKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ +T A + L+KPF L++L+ + + +
Sbjct: 62 ALKEIRASGNCSHIIMLTAMAEINDRVTGLDAGADDYLTKPFSLKELLARLRS-MERR 118
>gi|83594751|ref|YP_428503.1| two component transcriptional regulator [Rhodospirillum rubrum ATCC
11170]
gi|83577665|gb|ABC24216.1| two component transcriptional regulator, winged helix family
[Rhodospirillum rubrum ATCC 11170]
Length = 241
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M I L +DD ++ + L G+ VV+ +GA A + EP L + DI MP MD
Sbjct: 1 MTHSIALVDDDRNILTSVSMTLEAEGFRVVTYTDGAEALRGLSIEPVDLAVLDIKMPRMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+EL ++ E + V+F+T + KPF R L+ + +L
Sbjct: 61 GMELLQKLRERTA-MPVIFLTSKDDEVDELLGLRMGADDYIKKPFSQRLLIERIRAILRR 119
>gi|87119109|ref|ZP_01075007.1| putative two-component response regulator [Marinomonas sp. MED121]
gi|86165500|gb|EAQ66767.1| putative two-component response regulator [Marinomonas sp. MED121]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ L L + V NG +A + E F L++ DI+MP M+G+
Sbjct: 2 RILVVEDNHATAANLGDYLALFDHHVDFAYNGQAAIQLLDESRFDLIILDIMMPVMNGLT 61
Query: 64 LARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
D+ ++F+T + L KPF L++L V L +N
Sbjct: 62 ACHAIRAGYHADIPIIFLTARDTLEDKLAGFKAGADDYLVKPFELQELHARVQA-LEARN 120
>gi|303325918|ref|ZP_07356361.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
gi|302863834|gb|EFL86765.1| sensor histidine kinase/response regulator [Desulfovibrio sp.
3_1_syn3]
Length = 954
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D++ R+ + L +AG V NG A + VR +P SL+L D+ MP MDG+E
Sbjct: 600 VLVVDDNEINRQIAKELLEQAGLAVTVVGNGREAVEYVRRQPVSLVLMDVQMPVMDGLEA 659
Query: 65 ARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R EL +L ++ +T A D + L+KP + +L + L
Sbjct: 660 TCRIRELGRSPEELPILAMTAHADKGSRMDGKSVGMNDYLTKPVNPAELYAALEEWL 716
>gi|295097784|emb|CBK86874.1| heavy metal response regulator [Enterobacter cloacae subsp. cloacae
NCTC 9394]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ +L K L +AG+ V +NG + Y + L++ DI++P+++G +
Sbjct: 2 KILIVEDEIKTGEYLSKGLTEAGFVVDHADNGLTGYHLAMTAEYDLVILDIMLPDVNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R + V+ +T + L KPF +L+ V LL N
Sbjct: 62 IIRMLRTAGKGMPVLLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGN 120
>gi|262401977|ref|ZP_06078542.1| copper-sensing two-component system response regulator CpxR [Vibrio
sp. RC586]
gi|262351949|gb|EEZ01080.1| copper-sensing two-component system response regulator CpxR [Vibrio
sp. RC586]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +DD ++ L + L G+E+ N+G + V +E L+L D++MP+++G+E
Sbjct: 3 HILLIDDDTELTGLLTEVLQYEGFEISQANDGEAGLAAVSDE-IDLILLDVMMPKLNGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+R E V+ +T L KPF R+L+ + +L
Sbjct: 62 TLKRLREKWA-TPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|229827614|ref|ZP_04453683.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
49176]
gi|229788252|gb|EEP24366.1| hypothetical protein GCWU000182_03003 [Abiotrophia defectiva ATCC
49176]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ + + + L Y V + +G A D + + + ++ DI+MP+ DG+
Sbjct: 2 RLLLAEDEKSLSKAVKAILEAGKYSVDAVFDGEEALDYLETDTYDGVILDIMMPKKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + V+ +T + V + L+KPF ++L+ + + K
Sbjct: 62 VLKELRNKGNLIPVLLLTAKSEVDDKVEGLDLGANDYLTKPFEPKELLARIRAMTRSK 119
>gi|171914581|ref|ZP_02930051.1| putative two component system histidine kinase/response regulator
fusion protein [Verrucomicrobium spinosum DSM 4136]
Length = 380
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 2/112 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +D + + L G+EV++ + G A + + + L+L D++MPEMDG E+
Sbjct: 14 VLVVDDQVRNLQMVTNLLTHRGFEVITASGGREALNCLATKIPDLILLDVIMPEMDGFEV 73
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
R+ + V+F++G A + ++KPF+ +L+ V
Sbjct: 74 CRQIKSNRATSHVPVVFLSGSADQSSIVRGFETGGVDYIAKPFNKAELLARV 125
>gi|170736312|ref|YP_001777572.1| two component transcriptional regulator [Burkholderia cenocepacia
MC0-3]
gi|169818500|gb|ACA93082.1| two component transcriptional regulator, winged helix family
[Burkholderia cenocepacia MC0-3]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ + L + G+ V +GA+A +R E F L++ D +P MDG
Sbjct: 2 RILVVEDDAEIGAAIRSRLARLGHAVDLETDGATANGLLRVERFDLVVLDANLPGMDGFT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ +T +A+ L KPF R+L V LL
Sbjct: 62 VLRNLRASGSTTPVLLVTARSAIDDRVSGLGLGADDYLVKPFDYRELDARVQALLRR 118
>gi|90414946|ref|ZP_01222909.1| putative transcriptional regulator CpxR [Photobacterium profundum
3TCK]
gi|90323946|gb|EAS40544.1| putative transcriptional regulator CpxR [Photobacterium profundum
3TCK]
Length = 222
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ IL+ +DD + L + L + GY+V ++G SA ++ L+L D+++P +D
Sbjct: 1 MSN-ILVVDDDVMLCELLTEVLSEEGYDVHCLHDGESALTYMQAHSVDLVLLDVMLPNID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ARR + ++ +T A D + ++KPF + +L+ + +L
Sbjct: 60 GLQVARRICQRFA-TPILMLTALGDEASMLDGLQAGADQYVAKPFRVPELLARITSILRR 118
>gi|90961498|ref|YP_535414.1| two-component response regulator [Lactobacillus salivarius UCC118]
gi|90820692|gb|ABD99331.1| Two-component response regulator [Lactobacillus salivarius UCC118]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/120 (23%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ +IL+ ED+ ++ RF+ L YE C NG + +E + +L D+++PE++
Sbjct: 1 MS-RILIIEDEKNLSRFVELELQHEEYETEVCKNGRQGLELALDEDWDAILLDLMLPELN 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ RR ++ + ++ +T +V + KPF + +L+ + +L
Sbjct: 60 GLDICRRVRQV-KNTPIIMMTARDSVIDRVSGLDHGADDYIVKPFAIEELLARLRAVLRR 118
>gi|85860311|ref|YP_462513.1| response regulator receiver domain-containing protein [Syntrophus
aciditrophicus SB]
gi|85723402|gb|ABC78345.1| response regulator receiver domain with sensory domain [Syntrophus
aciditrophicus SB]
Length = 596
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ +D R L L YE+ NG A + ++ L+L D++MP MDG E
Sbjct: 19 RILIVDDLPQERWMLGALLKSYDYELSYATNGHEALELAKKINPDLILLDVMMPGMDGFE 78
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+ RR + L ++ +M +T + +SKPF +L V +
Sbjct: 79 VCRRIRKTPLIAEVPIMMVTALNEAEVRRKGVEIGADDFISKPFDRAELQARVRNI 134
>gi|54296742|ref|YP_123111.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
gi|296106303|ref|YP_003618003.1| two-component system, OmpR family, copper resistance phosphate
regulon response regulator CusR [Legionella pneumophila
2300/99 Alcoy]
gi|53750527|emb|CAH11929.1| hypothetical protein lpp0781 [Legionella pneumophila str. Paris]
gi|295648204|gb|ADG24051.1| two-component system, OmpR family, copper resistance phosphate
regulon response regulator CusR [Legionella pneumophila
2300/99 Alcoy]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED F+ K + ++ + +GA A ++ E + ++ D+++P MDG
Sbjct: 2 RLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + EL PDL V+ ++ V L KPF +L+ V LL K
Sbjct: 62 VLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRK 119
>gi|332981849|ref|YP_004463290.1| winged helix family two component transcriptional regulator
[Mahella australiensis 50-1 BON]
gi|332699527|gb|AEE96468.1| two component transcriptional regulator, winged helix family
[Mahella australiensis 50-1 BON]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M Q IL+ ED+ +R F+ ++GY +V G K RE+ +++ DI++P +D
Sbjct: 1 MKQ-ILIIEDEKPIREFIKIGFERSGYSIVEATTGEDGIRKAREQTPDMVILDIILPGID 59
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + + P + ++ +T + KPF+ +L+ +L
Sbjct: 60 GFNVCKTLRQEFPRMGIIMLTARNLEMDRIMGLEYGADDYVIKPFNPLELILRAEAILKR 119
>gi|320322881|gb|EFW78972.1| sensory box protein/response regulator [Pseudomonas syringae pv.
glycinea str. B076]
Length = 705
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M Q IL+ +DD +R L L GY ++ +G V + L+L DI+MP
Sbjct: 1 MTQSAATILIIDDDVHVRDLLEVLLQNQGYRTLTAESGELGLAMVELQAPDLILLDIMMP 60
Query: 58 EMDGIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
MDG E+A + ++ ++ ++ + + L+KP +L V
Sbjct: 61 GMDGYEVASQLKASKSTANIPIIMLSALDEQSARLSGLEAGTEEYLNKPVDSAELWLRVR 120
Query: 116 RLLTIK 121
LL +K
Sbjct: 121 NLLRLK 126
>gi|304439740|ref|ZP_07399638.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371727|gb|EFM25335.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 56/117 (47%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D++ +R + G+ VV +G A +K RE+ F +++ DI+MP +DG
Sbjct: 3 KILVVDDEEKIREVIKTYAEFEGHTVVEAVDGIDAVEKAREQDFDVIVMDIMMPRLDGFS 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V+ ++ + KPF ++L+ +N ++T
Sbjct: 63 AYKEIKK-TKNIPVLMLSARGEEYDKLFGFEIGIDDYVVKPFSPKELMARLNVIVTR 118
>gi|299135153|ref|ZP_07028344.1| response regulator receiver modulated diguanylate cyclase [Afipia
sp. 1NLS2]
gi|298590130|gb|EFI50334.1| response regulator receiver modulated diguanylate cyclase [Afipia
sp. 1NLS2]
Length = 458
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ ++L+ +D + L L ++VV+ N G A + + ++L D++MP++D
Sbjct: 1 MSARVLVVDDVPANVKLLEARLSAEYFDVVTANCGTQALEICQRAECDIVLLDVMMPDID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ RR + V+ +T + + L+KP L+ V L
Sbjct: 61 GFEVCRRLKSNPRTHFIPVVMVTALDSPSDRVRGLDAGADDFLTKPVSDVVLIARVRSLT 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 72.5 bits (178), Expect = 2e-11, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL +D L L + + V N + A E + LL+ + + DG+
Sbjct: 157 KILLVDDRPSSYERLAPVLAEE-HAVDVEPNPSEALFHAAENNYDLLIVSLNLENYDGLR 215
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVN 112
L + E + ++ ++ L +P +L+
Sbjct: 216 LCSQVRSLERTRSVPLLALSEADNNTQLLRGLEIGVNDYLLRPVDKNELLA 266
>gi|257126116|ref|YP_003164230.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
gi|257050055|gb|ACV39239.1| two component transcriptional regulator, winged helix family
[Leptotrichia buccalis C-1013-b]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ + + K L K Y V SC +G A V + ++ DI++P++DG E
Sbjct: 2 RLLVVEDEKKLNGLITKKLEKEYYGVDSCFDGEEAIRYVEGTEYDAIILDIMLPKLDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + ++ +T + L KPF +L+ + LL
Sbjct: 62 VIKRIRAKKNKVPILLLTARDNIDDKVKGLDYGADDYLVKPFIFEELMARIRVLLRR 118
>gi|257093278|ref|YP_003166919.1| winged helix family two component transcriptional regulator
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
gi|257045802|gb|ACV34990.1| two component transcriptional regulator, winged helix family
[Candidatus Accumulibacter phosphatis clade IIA str.
UW-1]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ ED+ ++RRF+ AL G++V ++ + L++ D+ +P+ DGI+
Sbjct: 8 IVVVEDEANIRRFIKLALESEGFQVFEADSVKRGLIEAGTRRADLVVLDLGLPDGDGIDF 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
R ++ V+ ++ + L+KPF +L+ V L ++
Sbjct: 68 IRDLRA-WSEIPVLVLSARTTEIDKVAALDAGADDYLTKPFGAAELLARVRAHLRRRS 124
>gi|291614947|ref|YP_003525104.1| transcriptional regulator [Sideroxydans lithotrophicus ES-1]
gi|291585059|gb|ADE12717.1| two component transcriptional regulator, winged helix family
[Sideroxydans lithotrophicus ES-1]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASA-YDKVREEPFSLLLTDIVMPEMDGI 62
+IL+AEDD+ + L ++ ++GY V +G SA E+PF L++ D+ +P++DG
Sbjct: 2 RILIAEDDEVLSDGLCHSMRQSGYAVDCVKDGHSANLILSGEQPFDLVILDLGLPKVDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R E + + V+ +T A + KPF L +L V L+
Sbjct: 62 SVLRSLREKNRQVPVIILTARDAEGDRVKGLDLGADDYMIKPFSLPELEARVRALIRR 119
>gi|227879192|ref|ZP_03997064.1| response regulator [Lactobacillus crispatus JV-V01]
gi|256844016|ref|ZP_05549503.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|256849420|ref|ZP_05554852.1| two-component system response regulator [Lactobacillus crispatus
MV-1A-US]
gi|262046087|ref|ZP_06019050.1| two-component system response regulator [Lactobacillus crispatus
MV-3A-US]
gi|293380700|ref|ZP_06626749.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
gi|312976908|ref|ZP_07788657.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
gi|227861195|gb|EEJ68842.1| response regulator [Lactobacillus crispatus JV-V01]
gi|256613921|gb|EEU19123.1| two-component system response regulator [Lactobacillus crispatus
125-2-CHN]
gi|256713536|gb|EEU28525.1| two-component system response regulator [Lactobacillus crispatus
MV-1A-US]
gi|260573417|gb|EEX29974.1| two-component system response regulator [Lactobacillus crispatus
MV-3A-US]
gi|290922740|gb|EFD99693.1| putative regulatory protein VanR [Lactobacillus crispatus 214-1]
gi|310896236|gb|EFQ45301.1| DNA-binding response regulator [Lactobacillus crispatus CTV-05]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE V+ +G A K+ P L++ D++MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPVAAYSGKEAITKLTTTPDIVLMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 DVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|163759328|ref|ZP_02166414.1| putative transcription regulator (with tandem n-terminal response
regulator domains) protein [Hoeflea phototrophica
DFL-43]
gi|162283732|gb|EDQ34017.1| putative transcription regulator (with tandem n-terminal response
regulator domains) protein [Hoeflea phototrophica
DFL-43]
Length = 457
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +D + L L +EV++ +G +A + L+L DI+MP +D
Sbjct: 1 MTARILVVDDIPANVKLLEARLMAEYFEVLTAADGMTALSICDQTQVDLILLDIMMPGID 60
Query: 61 GIELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E+ R + V+ +T + L+KP + L+ V L+
Sbjct: 61 GFEVCERLKRNPRTAHIPVVMVTALDQPSDRVRGLKAGADDFLTKPVNDLQLMTRVKSLV 120
Query: 119 TIK 121
K
Sbjct: 121 RFK 123
Score = 59.4 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL E+ + + + +AL E+ + +A + E+P+ L++ + + D + L
Sbjct: 158 VLLVENRANAQDRMGRALNGV-AEITVIGDPQAALFEAAEKPYELIIVSSALEDYDPLRL 216
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ E + V+ + L + L +P +LV + K
Sbjct: 217 CSQLRSLERTRFIPVLVVAEQGEENLVIRALELGVNDYLVRPLDPNELVARSVTQIRRK 275
>gi|152979029|ref|YP_001344658.1| two component transcriptional regulator [Actinobacillus
succinogenes 130Z]
gi|150840752|gb|ABR74723.1| two component transcriptional regulator, winged helix family
[Actinobacillus succinogenes 130Z]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 58/118 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + L L K+G+ V +G + + V+ P+ ++ D+ +P+MDG++
Sbjct: 2 RVLLIEDDPLIGNGLNIGLTKSGFSVDWFTDGKTGLEAVKSAPYDAVVLDLTLPKMDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+ +T + + L KPF L ++V + L+ +
Sbjct: 62 ILQQWRHDGFDVPVLILTARDTLDERVNGLQMGADDYLCKPFALAEVVARLQALIRRR 119
>gi|83717997|ref|YP_439386.1| response regulator [Burkholderia thailandensis E264]
gi|257142507|ref|ZP_05590769.1| response regulator [Burkholderia thailandensis E264]
gi|83651822|gb|ABC35886.1| response regulator [Burkholderia thailandensis E264]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + L L AGYEV + NG + +P+ +L D+ +P MDG+
Sbjct: 2 RVLVIEDDAGIAANLYDYLESAGYEVDAAANGPAGLQLAATQPWDAILLDLSLPGMDGLT 61
Query: 64 LARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L R+ E+ D V+ +T + L KPF L+++ + L+
Sbjct: 62 LCRKLREEIRRDTPVLMLTARDTLDDKLAGFVHGADDYLVKPFSLKEVAARLGALIKR 119
>gi|78221996|ref|YP_383743.1| two component, sigma54 specific, Fis family transcriptional
regulator [Geobacter metallireducens GS-15]
gi|78193251|gb|ABB31018.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Geobacter metallireducens GS-15]
Length = 454
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 54/116 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN+ IL+ +D+ ++R L L GY V +G A D ++E L+L DI MP +D
Sbjct: 1 MNETILVVDDEQNIRTALAGILEDEGYRPVFAKDGLEALDMAKKENPDLVLLDIWMPRLD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
G+E + E P L V+ ++G + S + KP L ++ V
Sbjct: 61 GLETLQALKEFHPLLTVVMMSGHGTIETAVKSTKLGAYDFIEKPLSLEKVLVTVKN 116
>gi|309972896|gb|ADO96097.1| Probable two-component regulator,transcriptional regulatory
component QseB [Haemophilus influenzae R2846]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD+ + L L K G+ V +G + + P+ ++ D+ +P++DG++
Sbjct: 2 RILLIEDDNLIGNGLQIGLTKLGFAVDWFTDGKTGMAALTSAPYDAVVLDLTLPKLDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ D+ V+ +T + L KPF L ++ + L+ +
Sbjct: 62 VLQQWRSNHQDVPVLILTARDTLDERVKGLQSGADDYLCKPFALAEVAARLQALIRRR 119
>gi|332880617|ref|ZP_08448291.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332681605|gb|EGJ54528.1| response regulator receiver domain protein [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 57/118 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED++++R + + L + + V + ASA +KV + + +L DI++P G+
Sbjct: 2 KILLIEDEEELRNTVREYLTREKFIVECAEDYASAMEKVNDYDYDCILLDIMLPGGSGLS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + V+ I+ ++ + L+KPFHL +L V LL K
Sbjct: 62 VLAHLKRMRKQESVIIISAKDSIEDKVEGLNLGADDYLAKPFHLAELNARVKSLLRRK 119
>gi|320540080|ref|ZP_08039735.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Serratia symbiotica str. Tucson]
gi|320029746|gb|EFW11770.1| fused DNA-binding response regulator in two-component regulatory
system with GlnL: response regulator/sigma54 interaction
protein [Serratia symbiotica str. Tucson]
Length = 444
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 1/120 (0%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + + + +DD +R L +AL AG +S NG + + + +LL+DI MP +
Sbjct: 1 MQRGTVWIVDDDSSIRWVLERALAGAGVNCISFGNGDDVLEALATQTPDVLLSDIRMPGI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+ L R+ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 61 DGLSLLRQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|260599978|ref|YP_003212549.1| nitrogen regulation protein NR(I) [Cronobacter turicensis z3032]
gi|260219155|emb|CBA34510.1| Nitrogen assimilation regulatory protein [Cronobacter turicensis
z3032]
Length = 488
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L
Sbjct: 25 VWIVDDDSSIRWVLERALTGAGLSCTTFESGNEVLDALSTKTPDVLLSDIRMPGMDGLTL 84
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 85 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 139
>gi|300022157|ref|YP_003754768.1| response regulator receiver modulated diguanylate cyclase
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523978|gb|ADJ22447.1| response regulator receiver modulated diguanylate cyclase
[Hyphomicrobium denitrificans ATCC 51888]
Length = 456
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D + L L +EV++ N+G A D + E ++L D++MP MD
Sbjct: 1 MTARVLVVDDILANVKLLEARLQAEYFEVLTANSGRQALDLLERESVDVVLLDVMMPGMD 60
Query: 61 GIELARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G E R + V+ +T + L+KP LV V L
Sbjct: 61 GFETCRHIKASHATHHIPVVMVTALDQPSDKVQGLESGADDFLTKPVDDIALVTRVKNLA 120
Query: 119 TIK 121
+K
Sbjct: 121 RLK 123
Score = 85.2 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ ++LL +D++ L++ L K G + + + +A K+ E F LL+ + + DG
Sbjct: 155 SGRVLLVDDNERSAARLLEFLSK-GNDAFAERDMHAALTKLTESNFDLLVVSLSLDAADG 213
Query: 62 IELARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ L + E L ++ + A L +P +L+ V +
Sbjct: 214 LRLCSQVRSLERTRHLPIIMLVEPGDEARLLRGLDMGVNDYLMRPIDRHELLARVKTQIK 273
Query: 120 IK 121
K
Sbjct: 274 RK 275
>gi|213971813|ref|ZP_03399916.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas syringae pv. tomato T1]
gi|301382522|ref|ZP_07230940.1| transcriptional activator CopR [Pseudomonas syringae pv. tomato
Max13]
gi|213923428|gb|EEB57020.1| two component heavy metal response transcriptional regulator,
winged helix family [Pseudomonas syringae pv. tomato T1]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+AED+ +L + L +AG+ V G A + E + LL+ D++MP +DG +
Sbjct: 2 KILVAEDEPKTGMYLQQGLLEAGFNVDRVLTGTEALHQALNESYDLLILDVMMPGIDGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+F+T V L KPF +L+ V LL
Sbjct: 62 VIQSVRAAGSLVPVLFLTARDGVDDRVRGLELGADDYLVKPFAFSELLARVRSLLRR 118
>gi|162139597|ref|YP_216033.2| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|322714084|gb|EFZ05655.1| transcriptional regulatory protein YedW [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 2 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + +T +V L KPF +L+ V L
Sbjct: 62 VLRALRTAHQS-PAICLTARDSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLR 116
>gi|148360632|ref|YP_001251839.1| two component response regulator [Legionella pneumophila str.
Corby]
gi|148282405|gb|ABQ56493.1| two component response regulator [Legionella pneumophila str.
Corby]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 54/118 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED F+ K + ++ + +GA A ++ E + ++ D+++P MDG
Sbjct: 2 RLLIVEDHKRTADFICKGFNEYQFQADAVYDGAEAIYRISEINYDAVVLDVMLPIMDGWA 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + EL PDL V+ ++ V L KPF +L+ V LL K
Sbjct: 62 VLEKIRELKPDLPVLMLSACDDVDSRVKGLEMGAYDYLVKPFSFNELLARVKSLLRRK 119
>gi|78063615|ref|YP_373523.1| two component heavy metal response transcriptional regulator
[Burkholderia sp. 383]
gi|77971500|gb|ABB12879.1| two component heavy metal response transcriptional regulator,
winged helix family [Burkholderia sp. 383]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ M +L K L +A Y V NG E F L++ D+++PEMDG E
Sbjct: 2 RILIVEDEPKMASYLRKGLMEASYTVDVAENGKDGLFLALHEDFDLVVLDVMLPEMDGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R V+ +T A+ L KPF + + + LL
Sbjct: 62 VLKRLRAQ-KQTPVLLLTAREAIEDKVAGLELGADDYLLKPFAYAEFLARIRSLLRR 117
>gi|85704134|ref|ZP_01035237.1| DNA-binding response regulator PetR [Roseovarius sp. 217]
gi|85671454|gb|EAQ26312.1| DNA-binding response regulator PetR [Roseovarius sp. 217]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 1 MNQ---KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMP 57
M + +L+ +DD+ +R L K L + G+ V + A + F L++ D++MP
Sbjct: 1 MTEPAPHLLIVDDDERIRGLLRKFLMRHGFLVSVARDAGHARRVLAGLDFDLIVMDVMMP 60
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
G+EL R E ++ +T + L KPF ++L+ +N +
Sbjct: 61 GESGVELTRALRETH-TTPILLLTAKGETPDRIEGLEAGADDYLPKPFEPKELLLRINAI 119
Query: 118 LTI 120
L
Sbjct: 120 LRR 122
>gi|269794181|ref|YP_003313636.1| CheY-like receiver domain/winged-helix DNA-binding
domain-containing response regulator [Sanguibacter
keddieii DSM 10542]
gi|269096366|gb|ACZ20802.1| response regulator with CheY-like receiver domain and winged-helix
DNA-binding domain [Sanguibacter keddieii DSM 10542]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +LLAEDD + L +AL + GY VV G A D L++ D+ +P+MD
Sbjct: 1 MT-HVLLAEDDPAIAEPLARALSREGYNVVVQGTGQGAID--NASVADLVVLDLGLPDMD 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+E+AR L V+ +T A ++KPF L +L+ V LL
Sbjct: 58 GLEVARAIRGLGLTTPVLVLTARADEVDLVVGLDAGADDYVTKPFRLAELLARVRALLRR 117
Query: 121 KN 122
+
Sbjct: 118 TH 119
>gi|256821572|ref|YP_003145535.1| winged helix family two component transcriptional regulator
[Kangiella koreensis DSM 16069]
gi|256795111|gb|ACV25767.1| two component transcriptional regulator, winged helix family
[Kangiella koreensis DSM 16069]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+LLA+DD ++ + L + L + G+EV ++GA+A + + F L++ D+++P ++G +
Sbjct: 3 KLLLADDDTELCQLLHEYLTQEGFEVALAHDGATAAKLILDHSFDLMVLDVMLPNLNGFD 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + + ++ +T ++KP + R+L + +L
Sbjct: 63 VLKTVRKE-SQVPILMLTARGDEIDRIVGLELGADDYIAKPCNPRELTARIRTILRR 118
>gi|258404235|ref|YP_003196977.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
gi|257796462|gb|ACV67399.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfohalobium retbaense DSM 5692]
Length = 448
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/119 (24%), Positives = 61/119 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++ILL +D+ + + L L K GYEV + +G S + ++E + +L+TD+ +P++ G
Sbjct: 4 KKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGRSGLNHLQEGGWDMLITDLKLPDITG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+++ + P L V+ IT + +++ + L+KP +L+ V +
Sbjct: 64 LDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDELLLLVQNVFER 122
>gi|149194607|ref|ZP_01871703.1| DNA-binding response regulator [Caminibacter mediatlanticus TB-2]
gi|149135351|gb|EDM23831.1| DNA-binding response regulator [Caminibacter mediatlanticus TB-2]
Length = 215
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 61/122 (50%), Gaps = 5/122 (4%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL EDD +M+ + + L G+EV +N A + + L++ D+++P+MD
Sbjct: 1 MS-KILLIEDDLEMQEEISEYLKNFGFEVDFTDNPIEALKIFK--NYELIILDLMLPKMD 57
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + + D+ V+ + + L+KP+ R+LV +N LL
Sbjct: 58 GFDVLKEIKK--SDIPVIISSARGDIGNKITGFELGADDYLAKPYEPRELVLRINALLKR 115
Query: 121 KN 122
KN
Sbjct: 116 KN 117
>gi|160900855|ref|YP_001566437.1| two component transcriptional regulator [Delftia acidovorans SPH-1]
gi|160366439|gb|ABX38052.1| two component transcriptional regulator, winged helix family
[Delftia acidovorans SPH-1]
Length = 239
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 51/117 (43%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + R + AL + G V C A A + + +P LL D+ +P+ +G++
Sbjct: 11 RVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLD 70
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + ++ ++ L+KPF R+LV LL
Sbjct: 71 WCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRR 127
>gi|39998037|ref|NP_953988.1| DNA-binding heavy metal response regulator [Geobacter
sulfurreducens PCA]
gi|39984982|gb|AAR36338.1| DNA-binding heavy metal response regulator [Geobacter
sulfurreducens PCA]
gi|298506979|gb|ADI85702.1| winged-helix heavy metal transcriptional response regulator
[Geobacter sulfurreducens KN400]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED+ +L K + G+ + +G R E + L++ DI++P DG E
Sbjct: 2 RVLIIEDEKKAAAYLQKGFAENGFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGWE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + ++ V++++ AV L KPF +L+ +L
Sbjct: 62 VLEELRKEGSEVPVIYLSARDAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
>gi|320546932|ref|ZP_08041234.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
gi|320448450|gb|EFW89191.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
K+L+AED+ M R L AL GY+V S +G +A D+ E + +++ DI+MP GIE
Sbjct: 2 KVLIAEDEVQMNRVLTTALTHEGYDVDSVYDGQAAIDQANENAYDVMVMDIMMPIKSGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++ +T + + L+KPF L++L+ + ++ +
Sbjct: 62 AVQEISQSGNQAHIIMLTAMSEIDDRVTGLDAGADDYLTKPFSLKELLARLRS-MSRR 118
>gi|261410066|ref|YP_003246307.1| winged helix family two component transcriptional regulator
[Paenibacillus sp. Y412MC10]
gi|261286529|gb|ACX68500.1| two component transcriptional regulator, winged helix family
[Paenibacillus sp. Y412MC10]
Length = 247
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 54/121 (44%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ +D+ + L L K GYEV+ +G SA + + L+L D+++P D
Sbjct: 5 MQGTILVVDDEQPIADILKFNLEKEGYEVICAFDGISAVEIALTQRPDLMLLDLMLPGKD 64
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+++ R + + ++ +T ++KPF R+++ V L
Sbjct: 65 GMDVCREVRAANLQIPIIMLTAKDGEIDKVLGLELGADDYVTKPFSTREILARVKAHLRR 124
Query: 121 K 121
+
Sbjct: 125 Q 125
>gi|224367691|ref|YP_002601854.1| sigma-54 dependent DNA-binding response regulator (NtrC-type
regulator) [Desulfobacterium autotrophicum HRM2]
gi|223690407|gb|ACN13690.1| sigma-54 dependent DNA-binding response regulator (NtrC-type
regulator) [Desulfobacterium autotrophicum HRM2]
Length = 451
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
IL+ EDD M + L+ L K GY V S ++G A +++R+ F L+++D+ +P MDG
Sbjct: 3 KYTILIVEDDQRMNQALLHILSKKGYAVESVDSGEKALERIRQTRFDLVVSDLKLPGMDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+E+ + + D + + IT + V + + KPF + +L V + L +
Sbjct: 63 MEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLEKR 122
>gi|218885926|ref|YP_002435247.1| Fis family transcriptional regulator [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218756880|gb|ACL07779.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 456
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 51/115 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ +DD R L L GY +G +A RE PF L+L D+ M M GI
Sbjct: 8 RLLVVDDDTTHRGMLQTLLADWGYRTECAGDGETAVTLCRETPFDLILMDLRMGVMSGIG 67
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
R +P + ++ +T ++ V D+ L+KP +L + R L
Sbjct: 68 ALREIRAYNPAIPILIMTAYSNVESAVDAIRSGAYDYLTKPLDFEELRLTLERAL 122
>gi|170724659|ref|YP_001758685.1| two component transcriptional regulator [Shewanella woodyi ATCC
51908]
gi|169810006|gb|ACA84590.1| two component transcriptional regulator, winged helix family
[Shewanella woodyi ATCC 51908]
Length = 243
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 50/119 (42%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
KILL ED+ D+ + L ++V+ C A + + F L+L D +P+ DG
Sbjct: 12 THKILLVEDEPDLANLVKLNLNTLNFDVIHCTTLKQANQNLELKSFDLILIDRTLPDGDG 71
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ L ++ + M +T + A L+KPF + +L V LL
Sbjct: 72 LMLCQQLRHAGKETPCMMLTAKDSEADIVLGLESGADDYLTKPFSVLELRARVKALLRR 130
>gi|120597472|ref|YP_962046.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|146294387|ref|YP_001184811.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|120557565|gb|ABM23492.1| multi-sensor hybrid histidine kinase [Shewanella sp. W3-18-1]
gi|145566077|gb|ABP77012.1| multi-sensor hybrid histidine kinase [Shewanella putrefaciens CN-32]
gi|319427741|gb|ADV55815.1| sensor histidine kinase for anaerobic respiratory control, ArcS
[Shewanella putrefaciens 200]
Length = 1234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 40/120 (33%), Positives = 58/120 (48%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+ ++ + L AGYEVV +NG A D + PF +L DI MP MDG+
Sbjct: 1112 VLLVEDNFINQQVATELLKSAGYEVVLADNGQVALDIIDSRPFDAVLMDIQMPVMDGLTA 1171
Query: 65 ARRATELDP--DLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
AR E +L ++ +T A S A ++KP L +L +N + KN
Sbjct: 1172 ARALRERYSPEELPIIAMTAHAMSGDREKSLAAGMNAHITKPIVLNELFETLNHWIQHKN 1231
Score = 99.8 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 6/115 (5%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + +EV + +GA A K+ +P LLL D +MPEMDG ++
Sbjct: 970 LVVDDNPTALQIYSAVMRDFHFEVDTAASGAEALYKLSRDPIDLLLLDWMMPEMDGSDVI 1029
Query: 66 RRA------TELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
LD ++ +T ++A L + + VL KPF L +E+
Sbjct: 1030 SAIDTMVAEGRLDKRPVIIMMTAYSAEPLQYEVESANVFAVLQKPFKASSLFDEI 1084
>gi|331268666|ref|YP_004395158.1| two-component response regulator [Clostridium botulinum BKT015925]
gi|329125216|gb|AEB75161.1| two-component response regulator [Clostridium botulinum BKT015925]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/120 (20%), Positives = 54/120 (45%), Gaps = 1/120 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ EDD ++ + K L + Y+V + G+ ++ + L++ DI++PEMD
Sbjct: 1 MKGRVLVIEDDIEIASIIRKHLTRENYDVNWSSTGSEGLKDFNKDKYDLVILDIMLPEMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G + + L ++ ++ ++ ++KPF L +L V +
Sbjct: 61 GFMVCKNIR-LISNVPILILSAKKQELDKVKGLKLGADDYITKPFSLIELEARVENNIKR 119
>gi|317475520|ref|ZP_07934783.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
gi|316908351|gb|EFV30042.1| hsp90-like protein [Bacteroides eggerthii 1_2_48FAA]
Length = 775
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ IL+ ED+ D+R++L + LGK Y ++ NG A V+E+ L+LTD++MP MDG
Sbjct: 528 KESILIVEDNPDIRQYLCEELGKT-YHILKAENGEEALSIVKEQEVGLILTDVMMPVMDG 586
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++L ++ + + V+ ++ + + + KPF + + ++ L
Sbjct: 587 LQLCKQIKQNLRTCHIPVIILSAKTDLKEQLEGLQVGADDYIPKPFSMIMIATKIKNLFR 646
Query: 120 IK 121
+
Sbjct: 647 TR 648
>gi|297539092|ref|YP_003674861.1| Fis family two component sigma54 specific transcriptional regulator
[Methylotenera sp. 301]
gi|297258439|gb|ADI30284.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Methylotenera sp. 301]
Length = 456
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 1 MN--QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
MN ++IL +D+ MRR L +L +AGY+ V NG A +R + L+++D+ MP
Sbjct: 1 MNQQKRILAVDDEPHMRRLLEISLRQAGYQPVVAENGKEALTILRNDNIDLVVSDLHMPV 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG++L + D V+ +T ++ + + + +PF L L ++R L
Sbjct: 61 MDGLKLLEALRAENIDTPVIIVTAQGEISSAVQAMKLGASDYILRPFDLETLEIAISRAL 120
Query: 119 TI 120
++
Sbjct: 121 SV 122
>gi|295693701|ref|YP_003602311.1| response regulator [Lactobacillus crispatus ST1]
gi|295031807|emb|CBL51286.1| Response regulator [Lactobacillus crispatus ST1]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/118 (25%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP-FSLLLTDIVMPEMDGI 62
KIL+ +DD ++ L L GYE ++ +G A K+ P L++ D++MP M GI
Sbjct: 2 KILVVDDDKEIVELLSIYLKNEGYEPIAAYSGKEAITKLSTTPDIVLMILDVMMPNMSGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + D D+ ++ ++ +SKPF+ +++ V LL
Sbjct: 62 DVIKEVRK-DSDIPIIIVSAKTGDMDKIQGLITGADDYVSKPFNPLEVMARVRSLLRR 118
>gi|289680029|ref|ZP_06500919.1| response regulator receiver:transcriptional regulatory protein,
C-terminal [Pseudomonas syringae pv. syringae FF5]
gi|330980778|gb|EGH78881.1| response regulator receiver:transcriptional regulatory protein
[Pseudomonas syringae pv. aptata str. DSM 50252]
Length = 230
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQATTILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + + LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|259417699|ref|ZP_05741618.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
gi|259346605|gb|EEW58419.1| multi-sensor hybrid histidine kinase [Silicibacter sp. TrichCH4B]
Length = 1136
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL +D+ + L L GY V + NG A V ++ L++ D++M + G+++
Sbjct: 699 ILAVDDEPINLQVLQNVLQPQGYRVTTARNGTEALRNVAQDRPDLIVLDVMMAGLSGLDV 758
Query: 65 ARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
AR +L ++ +T + + KPF +L++ + LL
Sbjct: 759 ARDLRRRHGLHELPIILLTARGRTSDMLAGFEAGANDYVVKPFVKDELLSRIRTLLE 815
>gi|297568710|ref|YP_003690054.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
gi|296924625|gb|ADH85435.1| response regulator receiver modulated metal dependent
phosphohydrolase [Desulfurivibrio alkaliphilus AHT2]
Length = 530
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D R L + L + GY V+ NG A + F L+L DI+MPE+DG E+
Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETGAFDLVLLDILMPELDGYEV 230
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR EL + V+ I+ + L+KPF+ L VN L
Sbjct: 231 LRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSVLLRARVNASL 286
>gi|256820277|ref|YP_003141556.1| two component transcriptional regulator, winged helix family
[Capnocytophaga ochracea DSM 7271]
gi|256581860|gb|ACU92995.1| two component transcriptional regulator, winged helix family
[Capnocytophaga ochracea DSM 7271]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++R L + L + + V + + S K+ + + +L DI++P G++
Sbjct: 2 KILIIEDEKELRLTLRQFLEQEHFLVETAKDYPSGLAKLADYDYDCILLDIMLPNGSGMQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + V+ I+ +V L+KPFHL +L+ V ++ KN
Sbjct: 62 LLDELRAMKKNHSVLIISAKDSVEDKVLGLEKGADDYLAKPFHLAELLARVKSIIRRKN 120
>gi|167761581|ref|ZP_02433708.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704]
gi|167660724|gb|EDS04854.1| hypothetical protein CLOSCI_03992 [Clostridium scindens ATCC 35704]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+K+L A+D+ + L Y+V+ NG +K+ + ++L D+ MP +DG
Sbjct: 4 KKKMLAADDEPGIIHLLKDYFEMQDYQVIEAENGMEVLEKI-SQNPDIILLDVNMPGLDG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
E+ R ++F+T A + KPF + +L V L +
Sbjct: 63 FEVCERIRA-HVSCPILFLTAKIEEADRIKGLMLGGDDYILKPFSIEELGARVEAHLRRE 121
>gi|161502167|ref|YP_001569279.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160863514|gb|ABX20137.1| hypothetical protein SARI_00190 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/117 (31%), Positives = 61/117 (52%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LLAED+ ++ +L KAL + G+ V +G +A + E ++L + DI MP +DG+E
Sbjct: 2 RLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSETYALAVLDINMPGIDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + L V+ +T +AVA L KPF L +L + LL
Sbjct: 62 VVQRLRKRGLTLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRR 118
>gi|197123948|ref|YP_002135899.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. K]
gi|196173797|gb|ACG74770.1| response regulator receiver modulated diguanylate cyclase
[Anaeromyxobacter sp. K]
Length = 322
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +D +L++ L + GY+V + +G A KVR EP L+L D+++P+MDG+E
Sbjct: 6 KILVVDDSRTQLDWLVRVLEREGYDVRTAADGKDAIRKVRGEPPDLVLLDMILPDMDGLE 65
Query: 64 LARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ R D + V+ ++ + + L+KPF +++ +L IK
Sbjct: 66 VLRIVKARPEDQFIPVIILSVKSDLDSKVAGLRIGADDFLAKPFAEAEILARCAAMLRIK 125
>gi|154506010|ref|ZP_02042748.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149]
gi|153793509|gb|EDN75929.1| hypothetical protein RUMGNA_03552 [Ruminococcus gnavus ATCC 29149]
Length = 140
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 1 MNQ-KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
M + ++LL EDD D+R + L Y V NG S + + +E L++ DI+MP M
Sbjct: 1 MKKEQVLLIEDDADIREGVRILLESENYCVEEAENGKSGLELLSDET-DLVILDIMMPGM 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
G+ ++ ++ V+F+T A + L+KPF +L+ V LL
Sbjct: 60 SGLRTCEEIRKV-SNVPVLFLTAKAQESDKLIGLMAGGDDYLAKPFSYAELLGRVKALLR 118
Query: 120 IKN 122
N
Sbjct: 119 RYN 121
>gi|83647950|ref|YP_436385.1| signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
gi|83635993|gb|ABC31960.1| Signal transduction histidine kinase [Hahella chejuensis KCTC 2396]
Length = 758
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ R K L K G V NG A ++ F L+ D MP MDG E
Sbjct: 634 RVLLVEDNTVNRNLARKMLEKCGCRVDFAENGEIAIQQMGSTHFDLIFMDCWMPVMDGYE 693
Query: 64 LARRATELD---PDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
RR E + ++ +T A L+KP +L V
Sbjct: 694 TTRRIRESGQSFSHIPIVALTANAFPGEKEKCMQCGMDDFLTKPIRFEELSAIVR 748
Score = 44.0 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 8/108 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREE-----PFSLLLTDIVMP 57
+IL+A+ ++ + + + V + P++ ++ D +P
Sbjct: 482 RILVADANELSLKATLDIFSEESLLHCDIAKTAEEVKALVNQAVDSKAPYNAMILDESLP 541
Query: 58 EMDGIELARRATELD--PDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
+ I+L + LD + ++ ++ + + LSK
Sbjct: 542 GDEFIDLIKFIKSLDLQKNAPILTLSSHPQREHVSELKGAGVSGYLSK 589
>gi|115352751|ref|YP_774590.1| two component transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115282739|gb|ABI88256.1| two component transcriptional regulator, winged helix family
[Burkholderia ambifaria AMMD]
Length = 282
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/117 (27%), Positives = 58/117 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V +G A + + F LL+ D+ +P+M G++
Sbjct: 42 RILIAEDDSILADGLTRSLRQSGYAVDHVKSGVDADTALSMQTFDLLILDLGLPKMSGLD 101
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ +R + +L V+ +T +V ++KPF L +L V L
Sbjct: 102 VLKRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 158
>gi|94311948|ref|YP_585158.1| two component transcriptional regulator [Cupriavidus metallidurans
CH34]
gi|93355800|gb|ABF09889.1| Two component heavy metal response transcriptional DNA binding
regulator, winged helix family precursor [Cupriavidus
metallidurans CH34]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 23/117 (19%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ ED + L ++L GY + +G SA + + ++ D+++P +DG
Sbjct: 2 RVLIVEDSQTLAEALSQSLQSEGYACDTAADGVSALKFLASYRYDAIILDLMLPRLDGFG 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R V+ ++ + + L+KPF L +L+ + L+
Sbjct: 62 VLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALVRR 118
>gi|329897279|ref|ZP_08272017.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC3088]
gi|328921275|gb|EGG28671.1| Phosphate regulon transcriptional regulatory protein PhoB [gamma
proteobacterium IMCC3088]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ +R L AL A + +N A+ + + ++L D ++P GIEL
Sbjct: 6 VLVVEDEVAIRDMLRMALEIADLRCIEADNIMDAHAIIIDRRPDIVLLDWMLPGGSGIEL 65
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR +L ++ V+ +T + ++KPF R+L+ + LL
Sbjct: 66 LRRLKRDKLTEEIPVIMLTAKTSEDNVIQGLDVGADDYITKPFAPRELIARIRALLRR 123
>gi|325300130|ref|YP_004260047.1| histidine kinase [Bacteroides salanitronis DSM 18170]
gi|324319683|gb|ADY37574.1| histidine kinase [Bacteroides salanitronis DSM 18170]
Length = 1442
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ ED+D++R L L Y V++ NG + +D R+E ++LTD++MP MDG+E+
Sbjct: 1181 ILIVEDNDELRTSLADILSVR-YRVLTAVNGEAGWDMARKELPDMILTDVMMPVMDGLEM 1239
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R+ + ++ ++ A++ + ++KPF L + ++ +
Sbjct: 1240 VRQLKNDAEVCHIPIIVLSAKASLDDRIQALDQGIDDYITKPFSAAYLEARIGQVFRQR 1298
>gi|320354633|ref|YP_004195972.1| winged helix family two component transcriptional regulator
[Desulfobulbus propionicus DSM 2032]
gi|320123135|gb|ADW18681.1| two component transcriptional regulator, winged helix family
[Desulfobulbus propionicus DSM 2032]
Length = 237
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 4/124 (3%)
Query: 1 MNQ----KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVM 56
M++ +LL EDD +R L G +VV+ +G A ++ +LL D+VM
Sbjct: 1 MSESLACTVLLFEDDPAIRAMLAAFFSTQGAKVVTAEDGREAMARIEAARPDVLLLDVVM 60
Query: 57 PEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR 116
P DG+ + +D +L V+ +T L+KPF R+L+ V
Sbjct: 61 PYRDGLSILAELRSVDVELPVILLTERNGEDDKVTGLDHGADDYLTKPFSPRELLARVRA 120
Query: 117 LLTI 120
LL
Sbjct: 121 LLRR 124
>gi|315446747|ref|YP_004079626.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. Spyr1]
gi|315265050|gb|ADU01792.1| two component transcriptional regulator, winged helix family
[Mycobacterium sp. Spyr1]
Length = 250
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 1/115 (0%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +D+ + + L + +EVV NG A R+ +++ DI +P +DG+E+
Sbjct: 20 LVVDDELPLAEVVASYLEREQFEVVVAANGVDAIAVARDLDPDVVILDIGLPSIDGLEVC 79
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R+ D ++ +T ++KPF R+LV + +L
Sbjct: 80 RQLR-TFSDAYIVMLTARDTEIDTVLGLTVGADDYITKPFSPRELVARIRAMLRR 133
>gi|313681777|ref|YP_004059515.1| two component transcriptional regulator, winged helix family
[Sulfuricurvum kujiense DSM 16994]
gi|313154637|gb|ADR33315.1| two component transcriptional regulator, winged helix family
[Sulfuricurvum kujiense DSM 16994]
Length = 227
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M + IL+ +DD +R+ L AL AGY V+ G ++ E +L+L D+ +P+MD
Sbjct: 1 MKETILIIDDDSAIRKLLEVALDAAGYHPVTIATGKEGLNRAAIEAPALVLLDLGLPDMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G E + E V+ ++ + A + L+KPF +L+ + L
Sbjct: 61 GKEFLSQFRE-WSQSPVIVLSARSGEAEKIAALEGGCDDYLTKPFGTGELLARIKASLRR 119
Query: 121 K 121
+
Sbjct: 120 R 120
>gi|296105438|ref|YP_003615584.1| nitrogen regulation protein NR(I) [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059897|gb|ADF64635.1| nitrogen regulation protein NR(I) [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 470
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G+ D + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALTGAGLSCTTFESGSEVLDALTTKTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|229189308|ref|ZP_04316329.1| Two-component response regulator [Bacillus cereus ATCC 10876]
gi|228594208|gb|EEK52006.1| Two-component response regulator [Bacillus cereus ATCC 10876]
Length = 234
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 2/117 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGY-EVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL +D+ + + L L K G+ + + + A ++ + L++ D+++P G +
Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTKQNHYDLIILDVMLPGQSGFD 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + D + F++ A+ + ++KPF+ ++V + L
Sbjct: 66 ICPIIRQQT-DCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRR 121
>gi|209520678|ref|ZP_03269429.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
gi|209498878|gb|EDZ98982.1| two component transcriptional regulator, winged helix family
[Burkholderia sp. H160]
Length = 220
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/119 (28%), Positives = 54/119 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD + + KAL G+ V +G +A + + L L D+ +P+ DG+E
Sbjct: 2 RILLVEDDRMIAEGVRKALRGEGFAVDWVEDGEAALRAAAAQLYDLALLDLGLPKRDGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ R L V+ +T AVA L KPF L +L + L+ ++
Sbjct: 62 VLRALRARGHALPVLIVTARDAVADRVKGLDAGADDYLVKPFDLDELGARMRALIRRQS 120
>gi|118471523|ref|YP_887235.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
smegmatis str. MC2 155]
gi|118172810|gb|ABK73706.1| DNA-binding response regulator, PhoP family protein [Mycobacterium
smegmatis str. MC2 155]
Length = 255
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL +D+ + + AL G+ + ++ A A +K R LL+ DI++P+ DG+
Sbjct: 31 RVLLVDDERALTNLVQMALQYEGWVIDVAHDAAQAVEKYRANLPDLLVLDIMLPDTDGLG 90
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + +F+T +VA + ++KPF L +LV + LL
Sbjct: 91 VLEQIRSFGTYTPTLFLTARDSVADRVEGLTAGGDDYMTKPFSLEELVARLRGLLRR 147
>gi|219850126|ref|YP_002464559.1| winged helix family two component transcriptional regulator
[Chloroflexus aggregans DSM 9485]
gi|219544385|gb|ACL26123.1| two component transcriptional regulator, winged helix family
[Chloroflexus aggregans DSM 9485]
Length = 245
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 50/117 (42%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+++ ED+ + L L G V + G SA V E+ L++ D+++P++DG+
Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR L ++ +T V + KPF +L+ VN +
Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRR 134
>gi|3511129|gb|AAC33719.1| regulatory protein CopR [Salmonella enterica subsp. enterica
serovar Dublin]
Length = 248
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 1/116 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KILL ED+ ++ + L +AGY V +G +E +SL++ DI++P +DG +
Sbjct: 24 KILLIEDNQKTIEWVRQGLTEAGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQ 83
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ R + +T +V L KPF +L+ V L
Sbjct: 84 VLRALRTAHQS-PFICLTARDSVEDRVKGLEAGANDYLVKPFSFGELLGRVRAQLR 138
>gi|50120277|ref|YP_049444.1| DNA-binding transcriptional activator KdpE [Pectobacterium
atrosepticum SCRI1043]
gi|49610803|emb|CAG74248.1| two-component response regulator of kdp operon [Pectobacterium
atrosepticum SCRI1043]
Length = 226
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M IL+ ED+ ++RRF+ +AL G V + L++ D+ +P+
Sbjct: 1 MQATILIVEDEKEIRRFVRQALEGEGCRVFDAETMQRGLLEAATRKPDLIILDLGLPDGS 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
GI+ R + L V+ ++ + L+KPF + +L+ + L
Sbjct: 61 GIDYIRDLRQ-WSSLPVIVLSARTDEQDKIGALDAGADDYLTKPFGIGELLARLRVALRR 119
Query: 121 KN 122
+
Sbjct: 120 HS 121
>gi|303247196|ref|ZP_07333470.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
gi|302491355|gb|EFL51243.1| multi-sensor hybrid histidine kinase [Desulfovibrio fructosovorans
JJ]
Length = 930
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LLAED+ R FL L +AG EV +G A +++ P L+L DI MPEMDG E
Sbjct: 689 TVLLAEDNQVNRLFLKHFLSEAGCEVRLAGSGGEALAQLQNGPVDLVLMDIQMPEMDGTE 748
Query: 64 LARRAT-----ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+R E + L V+ +T ++ + +SKP + +L + R+L
Sbjct: 749 ATKRIRAGEAGEANKGLPVVALTAYSMKGDRERFLSAGLDDYVSKPVDVDELFMVMRRVL 808
Query: 119 TIK 121
+
Sbjct: 809 DRR 811
>gi|224475844|ref|YP_002633450.1| response regulator saeR (fragment 1) [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420451|emb|CAL27265.1| truncated response regulator saeR (fragment 1) [Staphylococcus
carnosus subsp. carnosus TM300]
Length = 177
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN ILL +D+ D+ GY V + +NG A + ++ L++ DI+MPE++
Sbjct: 1 MN-HILLVDDEKDIVDICQTYFEYEGYTVTTASNGEEALQHL-DDSIDLIVLDIMMPELN 58
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G ++ + D+ ++++ + ++KPF R+LV N LL
Sbjct: 59 GYDVVKEMKLRQLDIPFIYLSAKTQEQDTIYALTLGADDYMTKPFSPRELVLRANNLLNR 118
>gi|218462225|ref|ZP_03502316.1| two-component response regulator protein [Rhizobium etli Kim 5]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD ++ R L L +AGY V +G + EP+ ++ DI +PEMDG+
Sbjct: 2 RILVIEDDVNLNRQLTDTLKEAGYVVDQAFDGEEGHFLGDTEPYDAIILDIGLPEMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRGAGRGMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|220922718|ref|YP_002498020.1| winged helix family two component transcriptional regulator
[Methylobacterium nodulans ORS 2060]
gi|219947325|gb|ACL57717.1| two component transcriptional regulator, winged helix family
[Methylobacterium nodulans ORS 2060]
Length = 221
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD + R L+ AL AG V +GA A EP+SL++ D+ +P + G E
Sbjct: 2 RVLVVEDDAALARGLVAALRLAGLAVDHEADGAEAARLALSEPYSLIVLDVGLPGLSGFE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + VM +T AV L KPF + V L+
Sbjct: 62 VLRRIRAAKSAVPVMILTARDAVTDRVRGLDLGADDYLLKPFAPAEFEARVRALIRR 118
>gi|260665127|ref|ZP_05865977.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
gi|260561181|gb|EEX27155.1| DNA-binding response regulator [Lactobacillus jensenii SJ-7A-US]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 55/112 (49%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILLAED+ + L A+ + GY+V S NG A + +++ + +++ DI+MP DG+
Sbjct: 2 RILLAEDEKQLNHVLTVAMTRQGYDVDSTFNGQEAVEMAQQKAYDVMIFDIMMPVKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
+ ++ +T + + L+KPF L++L+ +
Sbjct: 62 AVKEIRASGDKTYIVMLTAKSEIDDKVKGLDDGADDYLTKPFSLKELLARLR 113
>gi|254522018|ref|ZP_05134073.1| two-component system regulatory protein [Stenotrophomonas sp.
SKA14]
gi|219719609|gb|EED38134.1| two-component system regulatory protein [Stenotrophomonas sp.
SKA14]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ ED+ ++ + + L G+EV +G Y E + +++ D+++P +DGIE+
Sbjct: 2 VLVVEDNRNISEMIGEYLEGRGFEVDYAQDGLDGYRLAAENSYDVVVLDLMLPRLDGIEV 61
Query: 65 ARRAT-ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR + V+ +T + L+KPF +++L + L+ +
Sbjct: 62 CRRLRNDARKSTPVLMLTARDTLDDKLTGLGFGADDYLTKPFAIQELEARLRALIRRE 119
>gi|152991168|ref|YP_001356890.1| two-component response regulator [Nitratiruptor sp. SB155-2]
gi|151423029|dbj|BAF70533.1| two-component response regulator [Nitratiruptor sp. SB155-2]
Length = 218
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 51/120 (42%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M+ KILL EDD L + L + G+ V A D + LLL D+++P+ D
Sbjct: 1 MSNKILLVEDDRLFSETLQEFLEEEGFVVDVARTMQDAIDLHYNNRYDLLLLDVMLPDGD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G L + ++ +FIT + + L+KP L +L+ + +L
Sbjct: 61 GFTLLKELRSIEDMTPAIFITSKKQKSDIKEGFLLGGDDYLTKPIDLEELLLRIGAILRR 120
>gi|49082206|gb|AAT50503.1| PA5200 [synthetic construct]
Length = 248
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 57/119 (47%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ +DD +RR L + L + GY V + N + E F L++ D+++P DG+
Sbjct: 11 EKILVVDDDARLRRLLERFLDEQGYRVRAVENTEQMDRLLSRELFQLVVLDLMLPGEDGL 70
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
RR E + + ++ +T L+KPF+ R+L+ + +L +
Sbjct: 71 TACRRLREQNNQVPIIMLTAKGDEGSRIQGLELGADDYLAKPFNPRELLARIKAVLRRQ 129
>gi|325287243|ref|YP_004263033.1| winged helix family two component transcriptional regulator
[Cellulophaga lytica DSM 7489]
gi|324322697|gb|ADY30162.1| two component transcriptional regulator, winged helix family
[Cellulophaga lytica DSM 7489]
Length = 236
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKV-----REEPFSLLLTDI 54
M + +LLAEDD D L + L + V +G A D PF + + D+
Sbjct: 1 MQKTTVLLAEDDFDFGSILKQYLEIHNFAVTWAKDGKEALDIFMLEANNNTPFGICVFDV 60
Query: 55 VMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+MP+MDG LA + P+ +F+T + KPF LV +
Sbjct: 61 MMPKMDGFTLAEKIINNSPETPFVFLTAKKMKEDKIKGLKLGADDYIVKPFEADILVLRL 120
Query: 115 NRLLTI 120
+L
Sbjct: 121 KNILKR 126
>gi|291568365|dbj|BAI90637.1| two-component response regulator [Arthrospira platensis NIES-39]
Length = 598
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/119 (23%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D L + L K GY+V +G +A +V + L+L DI+MP++DG +
Sbjct: 14 ILIVDDTPGNLHLLSRILSKKGYKVREAIDGKTALQEVNNKLPDLILLDIMMPDIDGYAV 73
Query: 65 ARRATEL--DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ ++ ++F++ + + +SKPF ++++ V LT++
Sbjct: 74 CNQLKSEPYTAEVPIIFLSALDDIFDKVKAFEVGGVDYISKPFQFQEVLIRVKNQLTLR 132
>gi|167032955|ref|YP_001668186.1| two component transcriptional regulator [Pseudomonas putida GB-1]
gi|166859443|gb|ABY97850.1| two component transcriptional regulator, winged helix family
[Pseudomonas putida GB-1]
Length = 222
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 53/117 (45%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL ED+ + L L + GY V +G A + + EP+ L++ D+ +P + G+E
Sbjct: 2 RLLLVEDNVPLADELTAGLQRQGYAVDWLADGRDAVYQGQSEPYDLIILDLGLPGLPGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T + A + LSKPFH +L + LL
Sbjct: 62 VLAQWRAAGLATPVLILTARGSWAERIEGLKAGADDYLSKPFHPEELQLRIQALLRR 118
>gi|220928969|ref|YP_002505878.1| transcriptional regulator [Clostridium cellulolyticum H10]
gi|219999297|gb|ACL75898.1| two component transcriptional regulator, winged helix family
[Clostridium cellulolyticum H10]
Length = 237
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++KIL+ +D+ ++ + L K G++V++ NG++A + L++ D+++P+ +G
Sbjct: 3 SEKILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNG 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+EL + ++ ++F++ ++KPF +LV +N L
Sbjct: 63 LELCQNLRKITES-PILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRR 120
>gi|75906349|ref|YP_320645.1| response regulator receiver signal transduction histidine kinase
[Anabaena variabilis ATCC 29413]
gi|75700074|gb|ABA19750.1| Response Regulator Receiver Signal Transduction Histidine Kinase
[Anabaena variabilis ATCC 29413]
Length = 470
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D D R L L G+EV NG A + ++L D+ MPEMDG ++
Sbjct: 13 ILVVDDTPDNLRLLSAMLTAQGFEVRKALNGKMALTACQMLLPDVILLDVNMPEMDGYQV 72
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
++ E D+ V+FI+ V + ++KPFH +++ + +
Sbjct: 73 CQQLKDDEHTSDIPVIFISALDDVLDKVKAFDVGGVDYITKPFHGAEVILRIENQI 128
>gi|150016678|ref|YP_001308932.1| two component transcriptional regulator [Clostridium beijerinckii
NCIMB 8052]
gi|149903143|gb|ABR33976.1| two component transcriptional regulator, winged helix family
[Clostridium beijerinckii NCIMB 8052]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+KIL+ EDD+ + L G++ +G D E F L+L D+++P DG
Sbjct: 2 KKILIIEDDESIAELERDYLEITGFKTEIAQDGYKGLDLALNEEFDLILLDVMLPGKDGF 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ + + ++ ++ +T + KPF +LV VN ++
Sbjct: 62 KVCQEIRAV-KEIPILMVTAKKEDIYKIQGLGIGADDYIVKPFSPSELVARVNAHISR 118
>gi|329888730|ref|ZP_08267328.1| transcriptional regulatory protein chvI [Brevundimonas diminuta
ATCC 11568]
gi|328847286|gb|EGF96848.1| transcriptional regulatory protein chvI [Brevundimonas diminuta
ATCC 11568]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 7 LAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELAR 66
L +DD+++ + AL G+ V + ++GAS + + P L + D+ MP MDG+E+ R
Sbjct: 6 LVDDDENIVASVSLALESHGHTVTAYHDGASGLEALETTPPDLAILDVKMPRMDGMEVLR 65
Query: 67 RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R + + V+ +T + KPF R L+ V LL
Sbjct: 66 RLRQ-TSSIPVIMLTSKDEEIDEILGFNLGADDYIHKPFSQRLLIERVKALLRR 118
>gi|293393653|ref|ZP_06637963.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
odorifera DSM 4582]
gi|291423988|gb|EFE97207.1| UDP-N-acetylmuramoyl-L-alanine-D-glutamate ligase [Serratia
odorifera DSM 4582]
Length = 470
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/115 (26%), Positives = 56/115 (48%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + ++G + + + +LL+DI MP MDG+ L
Sbjct: 6 VWIVDDDSSIRWVLERALTGAGMSCATFDSGNDVLEALSTQTPDVLLSDIRMPGMDGLAL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|239929738|ref|ZP_04686691.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291438063|ref|ZP_06577453.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
gi|291340958|gb|EFE67914.1| two-component system response regulator [Streptomyces ghanaensis
ATCC 14672]
Length = 232
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L EDDD +R AL + G+ V + +G S + R + + L D+++P +DG+
Sbjct: 6 HVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRSDRPDIALLDVMVPGLDGVS 65
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L RR + + V+ ++ A ++KPF LV + +L
Sbjct: 66 LCRRIRDE-STVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRR 121
>gi|213961802|ref|ZP_03390068.1| putative DNA-binding response regulator/sensor histidine kinase
[Capnocytophaga sputigena Capno]
gi|213955591|gb|EEB66907.1| putative DNA-binding response regulator/sensor histidine kinase
[Capnocytophaga sputigena Capno]
Length = 903
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 60/122 (49%), Gaps = 3/122 (2%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+L+ ED++DMR+F+ L + Y ++ NG ++ ++ ++++D++MP+ DG
Sbjct: 653 KPTVLIVEDNEDMRQFIRYILSDS-YNLIEAENGEEGFEVAKKHLPDVVISDVMMPKTDG 711
Query: 62 IELARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+L + + V+ +T +A +SKPF+++ L V +L+
Sbjct: 712 FDLCQLLKTNVATNHIPVILLTAYALDEQKQVGFESGADAYISKPFNVKLLKTRVRKLIE 771
Query: 120 IK 121
+
Sbjct: 772 NR 773
>gi|169794308|ref|YP_001712101.1| positive response regulator for the pho regulon, autophosphorylates
and phosphorylates sensor PhoR [Acinetobacter baumannii
AYE]
gi|184159890|ref|YP_001848229.1| response regulator [Acinetobacter baumannii ACICU]
gi|213159117|ref|YP_002321115.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB0057]
gi|215481865|ref|YP_002324047.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB307-0294]
gi|239502828|ref|ZP_04662138.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB900]
gi|260553330|ref|ZP_05825944.1| response regulator [Acinetobacter sp. RUH2624]
gi|260557862|ref|ZP_05830075.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|293610528|ref|ZP_06692828.1| two component transcriptional regulator [Acinetobacter sp. SH024]
gi|299768353|ref|YP_003730379.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter sp. DR1]
gi|301345738|ref|ZP_07226479.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB056]
gi|301511640|ref|ZP_07236877.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB058]
gi|301596188|ref|ZP_07241196.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB059]
gi|332850113|ref|ZP_08432500.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6013150]
gi|332871439|ref|ZP_08439956.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6013113]
gi|332873325|ref|ZP_08441279.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6014059]
gi|169147235|emb|CAM85094.1| positive response regulator for the pho regulon, autophosphorylates
and phosphorylates sensor PhoR [Acinetobacter baumannii
AYE]
gi|183211484|gb|ACC58882.1| Response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Acinetobacter baumannii
ACICU]
gi|213058277|gb|ACJ43179.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB0057]
gi|213987672|gb|ACJ57971.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii AB307-0294]
gi|260405167|gb|EEW98665.1| response regulator [Acinetobacter sp. RUH2624]
gi|260408653|gb|EEX01958.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii ATCC 19606]
gi|292826872|gb|EFF85237.1| two component transcriptional regulator [Acinetobacter sp. SH024]
gi|298698441|gb|ADI89006.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter sp. DR1]
gi|322509805|gb|ADX05259.1| phoB [Acinetobacter baumannii 1656-2]
gi|323519817|gb|ADX94198.1| response regulator [Acinetobacter baumannii TCDC-AB0715]
gi|325123908|gb|ADY83431.1| positive response regulator for the pho regulon,autophosphorylates
and phosphorylates sensor PhoR [Acinetobacter
calcoaceticus PHEA-2]
gi|332730962|gb|EGJ62268.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6013150]
gi|332731476|gb|EGJ62766.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6013113]
gi|332738388|gb|EGJ69261.1| phosphate regulon transcriptional regulatory protein PhoB
[Acinetobacter baumannii 6014059]
Length = 236
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/121 (22%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM-DGIE 63
IL+ +D+ +R + +L AG++ + + A+ + ++ +L+L D ++P G++
Sbjct: 6 ILIVDDELPIREMIHTSLDMAGFQCLQAEDAKQAHQIIVDQRPALILLDWMLPGGVSGVD 65
Query: 64 LARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
L RR E ++ V+ +T ++KPF R+LV+ + +L
Sbjct: 66 LCRRLKRDENLAEIPVIMLTARGEEDHKVQGLDAGADDYMTKPFSTRELVSRIKAVLRRA 125
Query: 122 N 122
N
Sbjct: 126 N 126
>gi|154500840|ref|ZP_02038878.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
29799]
gi|150270340|gb|EDM97666.1| hypothetical protein BACCAP_04525 [Bacteroides capillosus ATCC
29799]
Length = 233
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD +R + L Y ++ NG SA + ++L D+ +P+M
Sbjct: 1 MNKPLILVVEDDTPVRNLITTTLKAHDYRFLTAANGESAVMEASSHNPEIILLDLGLPDM 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVN 115
DG+E+ + ++ ++ I+ + ++ L+KPF + +L+ +
Sbjct: 61 DGVEVIHKVRS-WSNMPIIVISARSEDTDKIEALDAGADDYLTKPFSVEELLARLR 115
>gi|86157980|ref|YP_464765.1| two component sigma54 specific Fis family transcriptional regulator
[Anaeromyxobacter dehalogenans 2CP-C]
gi|85774491|gb|ABC81328.1| two component, sigma54 specific, transcriptional regulator, Fis
family [Anaeromyxobacter dehalogenans 2CP-C]
Length = 467
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ D R L + + GY+V + ++G A + E ++LTD+VMP MD
Sbjct: 1 MRYRVLIVDDETDSREALAELSQRWGYDVQTASDGTEALRRAIEGHPDVILTDLVMPNMD 60
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
G+ L R PD V+ +TG + + + KP + L + R L
Sbjct: 61 GLWLLRALRAELPDCPVVLLTGRGTIQTAVQAIREGAFDFIEKPLEVPRLRLVLERALEK 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|83814442|ref|YP_446396.1| response regulator DrrA [Salinibacter ruber DSM 13855]
gi|294508333|ref|YP_003572391.1| response regulator DrrA [Salinibacter ruber M8]
gi|83755836|gb|ABC43949.1| response regulator DrrA [Salinibacter ruber DSM 13855]
gi|294344661|emb|CBH25439.1| response regulator DrrA [Salinibacter ruber M8]
Length = 236
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
IL+ +D++D+ + L + G+ V+ +G A ++ RE L++ DI+MP+MDGIE
Sbjct: 12 TILVVDDEEDLLSLVEYNLEQEGFGVLLARDGVEALEQAREHDPDLIILDIMMPKMDGIE 71
Query: 64 LARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+ ++ + + +M +T L KP + +V++ LL
Sbjct: 72 VCQKLRKDAHLRTIPIMMLTARNEEDDKVQGLDVGADIYLGKPVSVSVIVSQTKALLR 129
>gi|32470753|ref|NP_863746.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
gi|32442898|emb|CAD71417.1| sensory transduction histidine kinase [Rhodopirellula baltica SH 1]
Length = 993
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE-----PFSLLLTDIVMP 57
+++L+ +D + RR + L +AG V+S NG A D + E P+ L+L D+ MP
Sbjct: 582 KRVLVVDDGEANRRLIELVLKRAGATVMSAENGQEALDMIAEGNESGYPYELVLMDMQMP 641
Query: 58 EMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
+DG R E + V+ +TG A L+KP +L +L+ V++
Sbjct: 642 VLDGYSATRLLREREDTTPVIALTGNAMRGDREKCMDAGCDDFLTKPVNLDELLEMVSQY 701
Query: 118 L 118
L
Sbjct: 702 L 702
>gi|121605996|ref|YP_983325.1| two component transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120594965|gb|ABM38404.1| two component transcriptional regulator, winged helix family
[Polaromonas naphthalenivorans CJ2]
Length = 219
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 52/117 (44%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++LL EDD + +++ L Y V +G A +R E + L+L D+ +P+ DG++
Sbjct: 2 RLLLVEDDAMIGEAVLQVLRAEHYAVDWVRDGVMADAALRSEQYDLVLLDLGLPKRDGLD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R + V+ T AV + KP+ + +L+ + LL
Sbjct: 62 VLRALRARRASVPVLVATARDAVGDRIAGLDAGADDYVVKPYDIDELLARIRALLRR 118
>gi|325261323|ref|ZP_08128061.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
gi|324032777|gb|EGB94054.1| DNA-binding response regulator KdpE [Clostridium sp. D5]
Length = 244
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 1 MNQK--ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M K +L+ ED+ ++ F+ K L K Y+V+ + G A + + ++L D+ +P+
Sbjct: 1 MTHKFTVLIIEDEKNILTFVSKVLKKHEYKVLCADTGKEALSLIGSQCPDIILLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+DG + R ++ I+ +A + ++KPF +L+ + L
Sbjct: 61 IDGSSIIREVRA-WSSTPIIVISARSAEKEKVAALDLGADDYITKPFGTSELLARIRTSL 119
Query: 119 TIKN 122
N
Sbjct: 120 RHSN 123
>gi|315223364|ref|ZP_07865223.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
gi|314946695|gb|EFS98684.1| DNA-binding response regulator [Capnocytophaga ochracea F0287]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 57/119 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ ++R L + L + + V + + S K+ + + +L DI++P G++
Sbjct: 2 KILIIEDEKELRLTLRQFLEQEHFLVETAKDYPSGLAKLADYDYDCILLDIMLPNGSGMQ 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + + V+ I+ +V L+KPFHL +L+ V ++ KN
Sbjct: 62 LLDELRAMKKNHSVLIISAKDSVEDKVLGLEKGADDYLAKPFHLAELLARVKSIIRRKN 120
>gi|283834623|ref|ZP_06354364.1| nitrogen regulation protein NR [Citrobacter youngae ATCC 29220]
gi|291069533|gb|EFE07642.1| nitrogen regulation protein NR [Citrobacter youngae ATCC 29220]
Length = 469
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 55/115 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD +R L +AL AG + +G D + + +LL+DI MP MDG+ L
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLSCTAFESGKEVLDALASKTPDVLLSDIRMPGMDGLTL 65
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
++ + P L V+ +T + + + L KPF + + V V R ++
Sbjct: 66 LKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120
>gi|254415898|ref|ZP_05029655.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
gi|196177325|gb|EDX72332.1| response regulator receiver domain protein [Microcoleus
chthonoplastes PCC 7420]
Length = 364
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
MN IL+ ED++ +R + + L +EV+ NG + +++ L++ DI+MPE+D
Sbjct: 1 MN-TILIIEDEEGIRENIYELLSAEDFEVLLAENGKTGIQLAQQQRPDLIICDIMMPEVD 59
Query: 61 GIELARRATELDPD--LKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNR-- 116
G + + + + +F+T +A A LSKPF L+ +
Sbjct: 60 GYGVLTQLRQNLSTEAIPFIFLTAKSAKADLRQGMESGADDYLSKPFTREALLRAIAARF 119
Query: 117 ----LLTIKN 122
+L ++
Sbjct: 120 EKQGVLERQS 129
>gi|163759086|ref|ZP_02166172.1| probable transcription regulator protein [Hoeflea phototrophica
DFL-43]
gi|162283490|gb|EDQ33775.1| probable transcription regulator protein [Hoeflea phototrophica
DFL-43]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ EDD D+ R L +AL + Y V +G + EP+ ++ DI +PEMDG+
Sbjct: 2 RILIVEDDKDLNRQLAEALEEQSYVVDRAYDGEEGHFLGDTEPYDAVILDIGLPEMDGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + + V+ +T + ++KPFH+ +++ + L+
Sbjct: 62 VLEKWRADGRAMPVLILTARDRWSDKVAGIDAGADDYVTKPFHVEEVLARIRALIRR 118
>gi|160933606|ref|ZP_02080994.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
gi|156867483|gb|EDO60855.1| hypothetical protein CLOLEP_02460 [Clostridium leptum DSM 753]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ EDD ++ R + + GYE C +GA+A +V E + L+L D+++P MDG E+
Sbjct: 15 ILIVEDDPNIARTIEVTISLVGYECRICGDGAAAVQEVLEHDYDLVLLDVMLPGMDGFEV 74
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
++ V+F+T V + KPF +L+ + +L +
Sbjct: 75 IQKIQSKG--TPVIFLTALQDVTDKVKGLRLGAEDYIVKPFEAVELLARIEVVLRRSH 130
>gi|94263817|ref|ZP_01287623.1| Response regulator receiver [delta proteobacterium MLMS-1]
gi|93455828|gb|EAT05995.1| Response regulator receiver [delta proteobacterium MLMS-1]
Length = 476
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/118 (29%), Positives = 55/118 (46%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M ++L+ +D+ +R+ L G V +G ++ E F L+L D MP MD
Sbjct: 9 MEGRVLIIDDEASVRKGFASLLAAEGLTVTVAADGQEGLVLLQRESFDLVLLDFAMPGMD 68
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+E+ RR L+ V+ ITG+ V+L ++ L KP L+ V R L
Sbjct: 69 GLEVLRRIKVLEQAPMVIMITGYGEVSLVVEAIKEGAYDYLLKPPDPDHLLMTVQRAL 126
>gi|86147918|ref|ZP_01066223.1| transcriptional regulator CpxR [Vibrio sp. MED222]
gi|218710833|ref|YP_002418454.1| transcriptional regulator CpxR [Vibrio splendidus LGP32]
gi|85834345|gb|EAQ52498.1| transcriptional regulator CpxR [Vibrio sp. MED222]
gi|218323852|emb|CAV20213.1| Transcriptional regulatory protein cpxR [Vibrio splendidus LGP32]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 2/116 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD ++ L L G+ V N+G + + + +E L+L D++MP ++G+E
Sbjct: 4 ILLIDDDTELTGLLKDILSFEGFTVSEANDGYAGLEAINDE-IDLILLDVMMPRLNGMET 62
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
++ E + V+ +T L KPF R+L+ + +L
Sbjct: 63 LKKLRENW-ETPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRR 117
>gi|323357268|ref|YP_004223664.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
gi|323273639|dbj|BAJ73784.1| response regulator consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Microbacterium
testaceum StLB037]
Length = 238
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 33/116 (28%), Positives = 55/116 (47%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
ILL +DD+ +R L L ++GY VV +G A D + +L + D++MP +DG E
Sbjct: 8 ILLVDDDETIRAGLGAFLERSGYRVVVAADGQEALDALPVGDIALAVCDVIMPRVDGREF 67
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
RR L ++ +T + L+KPF ++L++ V +L
Sbjct: 68 VRRVRAEGRWLPIILLTQVGESYERSAALDEGADDYLNKPFDPQELLSRVRAVLRR 123
>gi|300855161|ref|YP_003780145.1| putative response regulator [Clostridium ljungdahlii DSM 13528]
gi|300435276|gb|ADK15043.1| predicted response regulator [Clostridium ljungdahlii DSM 13528]
Length = 217
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + L + YE + NG A +++ + F L+L D+++P++DG
Sbjct: 3 KILVVEDELPISNLIKLNLNMSNYECKTAFNGEDALEEIENDSFDLILLDVMLPKIDGFT 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
L + L + V+F+T +V ++KPF +L+ ++ +L N
Sbjct: 63 LLEKIKPLG--IPVIFLTAKTSVTDKVYGLRAGADDYITKPFEGIELLARIDNVLRHYN 119
>gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription
regulator protein [Herbaspirillum seropedicae SmR1]
gi|300072146|gb|ADJ61545.1| response regulator for cobalt/zinc/cadmium resistance transcription
regulator protein [Herbaspirillum seropedicae SmR1]
Length = 235
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
ILL ED+ +L + L ++G+ V G R + L++ D+++P M+G +
Sbjct: 2 HILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGWD 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ R D V+F+T V L KPF +L+ V LL
Sbjct: 62 ILRELRRTH-DTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRR 117
>gi|293609501|ref|ZP_06691803.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827953|gb|EFF86316.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+ ED+ + +L+K L ++GY+ + G + ++ + + LL+ D+++P++DG
Sbjct: 2 RILIIEDEIKIATYLVKGLKESGYQAECVHLGLQGLEMLKRDQYDLLILDVMLPDIDGWS 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
+ + + + V+F+T V L+KPF +L+ + LL +
Sbjct: 62 VLQVLRQ-FSKIPVIFLTAKDQVMDRVKGLELGADDYLAKPFSYIELLARIKSLLRRQ 118
>gi|225386953|ref|ZP_03756717.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
DSM 15981]
gi|225046965|gb|EEG57211.1| hypothetical protein CLOSTASPAR_00703 [Clostridium asparagiforme
DSM 15981]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
Q IL+ +DD + + L G+EV+ +G + + LL+ D++MP +DGI
Sbjct: 2 QTILVCDDDKQIVEAIDIYLTGEGFEVIKAYDGYEVLEYLESHDADLLIIDVMMPGLDGI 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + + ++ ++ + ++KPF+ +LV V L
Sbjct: 62 RTTLKVRE-NSSIPIIILSAKSEDTDKILGLNIGADDYITKPFNPLELVARVKSQLRR 118
>gi|253702327|ref|YP_003023516.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M21]
gi|251777177|gb|ACT19758.1| response regulator receiver sensor signal transduction histidine
kinase [Geobacter sp. M21]
Length = 379
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ +L+ +D+ +R + L Y+V+ +GA A + ++LTD++MPEMDG
Sbjct: 18 KKTVLIVDDEAVIRDLCKRVL--HDYDVIEAGDGAEALEIFLRGGIDVILTDVMMPEMDG 75
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+EL + E +P + V+ +TGFA L + ++KP +L L + V++ L
Sbjct: 76 LELLKNLKEREPTVVVIIMTGFADKELILKALKADADDFITKPLNLLQLKSAVDKAL 132
>gi|167901468|ref|ZP_02488673.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC
13177]
Length = 247
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/117 (29%), Positives = 57/117 (48%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+IL+AEDD + L ++L ++GY V NG A + + F LL+ D+ +P M G+E
Sbjct: 2 RILIAEDDSILADGLTRSLRQSGYAVDHVRNGVEADTALSMQTFDLLILDLGLPRMSGLE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ RR + +L V+ +T +V ++KPF L +L V L
Sbjct: 62 VLRRLRARNSNLPVLILTAADSVDERVKGLDLGADDYMAKPFALNELEARVRALTRR 118
>gi|119945448|ref|YP_943128.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Psychromonas ingrahamii 37]
gi|119864052|gb|ABM03529.1| two component, sigma54 specific, transcriptional regulator, Fis
family protein [Psychromonas ingrahamii 37]
Length = 468
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 59/115 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+L+ +DD D+ L + + GY V ++G +A D R ++LTD+ MP MDG E
Sbjct: 14 TVLIVDDDPDICSLLSYLMKREGYVVQIVHDGMAALDLTRNRAPDIILTDLRMPRMDGFE 73
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L ++ + DL V+ +T +A + +S L KPF +V V+R+L
Sbjct: 74 LLKQVKLIKQDLPVVILTAYAGINGAVESIKAGADDYLPKPFDNSKVVMLVHRIL 128
>gi|328953201|ref|YP_004370535.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
gi|328453525|gb|AEB09354.1| multi-sensor signal transduction histidine kinase [Desulfobacca
acetoxidans DSM 11109]
Length = 698
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+ KIL+ +D+ + + K L GY V +NG A + + + L+L+D+ MPE+DG
Sbjct: 4 SAKILVVDDESAVLEIIRKILVDRGYIVDVASNGLEALKFLEKSRYDLVLSDVKMPEIDG 63
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
+EL ++ L PDL + ++ FA + + ++KP + DL+ + R L
Sbjct: 64 LELLQQIGLLYPDLTTVMLSAFATIRDAVAAIKLGAFDYIAKPVYPEDLLYSIERALK 121
>gi|325849744|ref|ZP_08170891.1| putative transcriptional regulatory protein CutR [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325479973|gb|EGC83053.1| putative transcriptional regulatory protein CutR [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 224
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 1/119 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ ED+ + + K+L K+GYEV S +G +A + + E + L++ D+ +P MDG+E
Sbjct: 2 KILIVEDEQILNDTINKSLKKSGYEVESAFDGINAMEMIEIESYDLIILDLNLPHMDGME 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
+ + + D + KV+ ++ + + + L KPFHL +L V LT +N
Sbjct: 62 ILKNLRKEDEETKVLILSARSQIKDKVEGLDAGANDFLQKPFHLDELKARVRS-LTRRN 119
>gi|310827238|ref|YP_003959595.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
gi|308738972|gb|ADO36632.1| hypothetical protein ELI_1646 [Eubacterium limosum KIST612]
Length = 223
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
++IL+ ED+ + + L L + G+ V + A A + + F L+L D+++P+ +G
Sbjct: 2 RRILIVEDERQIVKHLRALLEEEGFSVDTAATRAEAESALEGDRFDLILLDLMLPDGNGY 61
Query: 63 ELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
L + V+F+T A ++KPF +LV V L
Sbjct: 62 ALCTEILHRG-NTPVIFLTALDDEASIVTGFNLGADDYITKPFKPMELVARVKNSLRR 118
>gi|255035362|ref|YP_003085983.1| histidine kinase [Dyadobacter fermentans DSM 18053]
gi|254948118|gb|ACT92818.1| histidine kinase [Dyadobacter fermentans DSM 18053]
Length = 1378
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+LL ED+D+ R +L + K Y ++ NG + E L+++D++MPEMDG EL
Sbjct: 1128 VLLVEDNDEFREYLKEVFQK-DYRIIEAANGKIGLEMALEHVPDLIVSDVMMPEMDGTEL 1186
Query: 65 ARRAT--ELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIK 121
R + V+ +T A ++KPF L L + L++ +
Sbjct: 1187 CRTIKTDRRISHIPVVLLTARAEEEQQLQGYQTGADAYVTKPFRLDILQVRIANLISQR 1245
>gi|160935144|ref|ZP_02082527.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC
BAA-613]
gi|158441875|gb|EDP19572.1| hypothetical protein CLOBOL_00039 [Clostridium bolteae ATCC
BAA-613]
Length = 229
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 2/123 (1%)
Query: 1 MNQK-ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
MN+ IL+ EDD ++ F+ +L GY + +NG S + L+L D+ +P++
Sbjct: 1 MNETTILVIEDDKSIQNFMKISLKTRGYAYILADNGLSGISLFYADHPDLILLDLGLPDI 60
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLT 119
DG+E+ R+ + D+ ++ ++ + ++KPF +L+ + L
Sbjct: 61 DGMEVLRQIRQK-SDVPIIVVSARGQEREKISALDQGADDYVTKPFSAEELLARIRVGLR 119
Query: 120 IKN 122
K+
Sbjct: 120 HKS 122
>gi|53803482|ref|YP_114746.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
gi|53757243|gb|AAU91534.1| DNA-binding response regulator [Methylococcus capsulatus str. Bath]
Length = 228
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 48/117 (41%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD L + LG+ G+ V + ++ K + L++ D +P DG+
Sbjct: 2 RILLVEDDRKAAGLLTRGLGEEGFRVDTAHSAEDTEQKNLHTGYGLIILDWNLPGKDGLT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ + V+ +T A+ L+KPF +L+ V LL
Sbjct: 62 FCEELRKREIRTPVLMLTARDALTDRVRGLDTGADDYLTKPFAFEELLARVRALLRR 118
>gi|186685129|ref|YP_001868325.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
gi|186467581|gb|ACC83382.1| multi-sensor signal transduction histidine kinase [Nostoc
punctiforme PCC 73102]
Length = 511
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
IL+ +D + L L + GY+V S G++ P L+L D+ MPEM+G E+
Sbjct: 13 ILVIDDTPENLNLLSAMLTEQGYKVRSVTKGSTGLRGANAVPPDLILLDVNMPEMNGYEV 72
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ V+FI+ V + A ++KPF L +++ + LTI
Sbjct: 73 CEHLKASDRTRKIPVIFISALGDVLDKVKAFAVGGVDYITKPFQLEEVLARIENHLTI 130
>gi|291551304|emb|CBL27566.1| Response regulators consisting of a CheY-like receiver domain and a
winged-helix DNA-binding domain [Ruminococcus torques
L2-14]
Length = 231
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
KIL+ +DD ++ + L + GY+++ +G A + + +E +LL+ D++MP +DGI
Sbjct: 3 KILVCDDDREIVEAIEIYLSQEGYQILKAYDGIEALEILEKEEVNLLIIDVMMPRLDGIR 62
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ E + L ++ ++ + ++KPF+ +LV V L
Sbjct: 63 ATLKIREKNS-LPIIILSAKSEDTDKILGLNIGADDYVTKPFNPLELVARVKSQLRR 118
>gi|289626997|ref|ZP_06459951.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289646795|ref|ZP_06478138.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
syringae pv. aesculi str. 2250]
gi|330867485|gb|EGH02194.1| KDP operon transcriptional regulatory protein kdpE [Pseudomonas
syringae pv. aesculi str. 0893_23]
Length = 230
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 1 MNQ--KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPE 58
M+Q IL+ +D+ +R+FL +L GY+V+ GA + LL+ D+ +P+
Sbjct: 1 MSQAATILVIDDEPQIRKFLRISLVSQGYKVLEAATGAEGLTQAALNKPDLLVLDLGLPD 60
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
MDG ++ E + V+ ++ A+ A + ++KPF +++ + + LL
Sbjct: 61 MDGQQVLSEFRE-WSAVPVLVLSVRASEAQKVQALDAGANDYVTKPFGIQEFLARIRALL 119
Query: 119 T 119
Sbjct: 120 R 120
>gi|254416266|ref|ZP_05030020.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
gi|196176948|gb|EDX71958.1| PAS fold family [Microcoleus chthonoplastes PCC 7420]
Length = 506
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
I++ +D L L +G++V+ +G SA KV L+L D++MP +DG E
Sbjct: 19 IVIVDDTPHNLGVLFDFLTDSGFKVLVAQDGQSALQKVEYAKPDLILLDVMMPGIDGFET 78
Query: 65 ARRATE--LDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
RR D+ V+F++ + ++KP ++ V L ++N
Sbjct: 79 CRRLKANPATRDIPVLFLSALSDAVDKVKGFNLGAVDFITKPVQQEEVKARVTTHLALRN 138
>gi|170751369|ref|YP_001757629.1| two component transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170657891|gb|ACB26946.1| two component transcriptional regulator, winged helix family
[Methylobacterium radiotolerans JCM 2831]
Length = 225
Score = 138 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 55/117 (47%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
++L+ EDD D+ R ++ AL +AGY +G EP+ ++ D+ +P+ DG+
Sbjct: 2 RLLVVEDDKDINRQVVAALEEAGYVADKAYDGEEGGYLGESEPYDAIILDMGLPKADGVT 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
+ ++ V+ +T + D ++KPFH+ +L+ V LL
Sbjct: 62 VLQKWRRAGVKTPVIILTARDRWSDKVDGFDAGADDYVTKPFHMEELMARVRALLRR 118
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.317 0.218 0.753
Lambda K H
0.267 0.0664 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,355,798,481
Number of Sequences: 14124377
Number of extensions: 159233116
Number of successful extensions: 793071
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 79213
Number of HSP's successfully gapped in prelim test: 5168
Number of HSP's that attempted gapping in prelim test: 604326
Number of HSP's gapped (non-prelim): 92607
length of query: 122
length of database: 4,842,793,630
effective HSP length: 89
effective length of query: 33
effective length of database: 3,585,724,077
effective search space: 118328894541
effective search space used: 118328894541
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 77 (33.6 bits)