RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780312|ref|YP_003064725.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(122 letters)
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 97.7 bits (243), Expect = 7e-22
Identities = 47/118 (39%), Positives = 65/118 (55%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
M +IL+ +DD D+R L +AL AGYEVV+ + A + + E PF L+L DI MP MD
Sbjct: 3 MMARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMD 62
Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
G+EL + DPDL V+ +TG + ++ L KPF L L+ V R L
Sbjct: 63 GLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120
>gnl|CDD|143854 pfam00072, Response_reg, Response regulator receiver domain. This
domain receives the signal from the sensor partner in
bacterial two-component systems. It is usually found
N-terminal to a DNA binding effector domain.
Length = 111
Score = 86.9 bits (216), Expect = 1e-18
Identities = 38/114 (33%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+L+ +DD +R L + L K GY V ++G A + ++E+ L+L DI MP MDG+EL
Sbjct: 1 VLIVDDDPLIRELLRQLLEKEGYVVAEADDGEEALELLKEKRPDLILLDIRMPGMDGLEL 60
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNA---KVLSKPFHLRDLVNEVN 115
RR P V+ +T D+ A LSKPF +LV +
Sbjct: 61 LRRIRRRPPTTPVIVLTAHGDE---EDAVEALKAGANDFLSKPFDPEELVAALR 111
>gnl|CDD|29071 cd00156, REC, Signal receiver domain; originally thought to be
unique to bacteria (CheY, OmpR, NtrC, and PhoB), now
recently identified in eukaroytes ETR1 Arabidopsis
thaliana; this domain receives the signal from the
sensor partner in a two-component systems; contains a
phosphoacceptor site that is phosphorylated by histidine
kinase homologs; usually found N-terminal to a DNA
binding effector domain; forms homodimers.
Length = 113
Score = 85.7 bits (212), Expect = 3e-18
Identities = 40/113 (35%), Positives = 60/113 (53%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELA 65
L+ +DD +R L + L K GYEVV +G A + EE L+L DI+MP MDG+EL
Sbjct: 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEEKPDLILLDIMMPGMDGLELL 60
Query: 66 RRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
RR + PD+ ++F+T ++ L+KPF +L+ + LL
Sbjct: 61 RRIRKRGPDIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRALL 113
>gnl|CDD|33243 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 74.2 bits (182), Expect = 8e-15
Identities = 40/125 (32%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+LL +D+ D L + L GY V+ NG A ++EEP L+L D+ MPEMDG E
Sbjct: 16 TVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEEPPDLVLLDVRMPEMDGAE 75
Query: 64 LARRATELDP---DLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117
+ + + P + V+ +T +A + D A LSKP ++LV V+
Sbjct: 76 VLNKLKAMSPSTRRIPVILLTAYAD---SEDRQRALEAGADDYLSKPISPKELVARVSSH 132
Query: 118 LTIKN 122
L +K
Sbjct: 133 LQLKR 137
>gnl|CDD|34367 COG4753, COG4753, Response regulator containing CheY-like
receiver domain and AraC-type DNA-binding domain
[Signal transduction mechanisms].
Length = 475
Score = 72.3 bits (177), Expect = 3e-14
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 3 QKILLAEDDDDMRRFLIKAL--GKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59
K+L+ +D+ +R L + G EVV + NG A + ++E +++TDI MP M
Sbjct: 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQETQPDIVITDINMPGM 61
Query: 60 DGIELARRATELDPDLKVMFITGF 83
DG++L + E PD + + ++G+
Sbjct: 62 DGLDLIKAIKEQSPDTEFIILSGY 85
>gnl|CDD|31127 COG0784, CheY, FOG: CheY-like receiver [Signal transduction
mechanisms].
Length = 130
Score = 69.5 bits (169), Expect = 2e-13
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNG-ASAYDKVREEP-FSLLLTDIVMPE 58
++L+ +D+ RR L + L GYEVV +G A + +RE P L+L DI MP
Sbjct: 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELPQPDLILLDINMPG 63
Query: 59 MDGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKP-FHLRDLVNEVNRL 117
MDGIEL RR P++ V+ +T +A A + A L+KP F +L+ + RL
Sbjct: 64 MDGIELLRRLRARGPNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRL 123
Query: 118 L 118
L
Sbjct: 124 L 124
>gnl|CDD|31088 COG0745, OmpR, Response regulators consisting of a CheY-like
receiver domain and a winged-helix DNA-binding domain
[Signal transduction mechanisms / Transcription].
Length = 229
Score = 67.3 bits (164), Expect = 9e-13
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+ILL EDD ++ L + L + GYEV +G A + RE+P L+L D+++P++DG+E
Sbjct: 2 RILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQP-DLVLLDLMLPDLDGLE 60
Query: 64 LARRATEL-DPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
L RR ++ +T L+KPF R+L+ + LL
Sbjct: 61 LCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALL 116
>gnl|CDD|33501 COG3706, PleD, Response regulator containing a CheY-like receiver
domain and a GGDEF domain [Signal transduction
mechanisms].
Length = 435
Score = 64.2 bits (156), Expect = 1e-11
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 12/124 (9%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +DD R L + L G+ VV +G A ++ E P L+L D MP+MDG
Sbjct: 132 PKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAELPPDLVLLDANMPDMDG 191
Query: 62 IELAR--RATELDPDLKVMFITG-----FAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
+EL R E D+ ++ ++ A N ++KP +L +
Sbjct: 192 LELCTRLRQLERTRDIPIILLSSKDDDELVVRAFELGVN-----DYITKPIEEGELRARL 246
Query: 115 NRLL 118
R L
Sbjct: 247 RRQL 250
Score = 33.4 bits (76), Expect = 0.016
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 15 RRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATELD 72
+ L L EV + G A + + L D++MP MDG EL RR
Sbjct: 1 VKLLEAKLPLEYKEVATAKKGLIALAILLDHKPDYKLLDVMMPGMDGFELCRRLKAEP 58
>gnl|CDD|34204 COG4566, TtrR, Response regulator [Signal transduction mechanisms].
Length = 202
Score = 61.0 bits (148), Expect = 7e-11
Identities = 33/116 (28%), Positives = 52/116 (44%)
Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+ + +DD+ +R L L AG++V + + LL D+ MP M G+EL
Sbjct: 7 VHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLEL 66
Query: 65 ARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
R E L V+F+TG + + + L KPF +DL++ V R L
Sbjct: 67 QDRLAERGIRLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122
>gnl|CDD|32379 COG2197, CitB, Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal
transduction mechanisms / Transcription].
Length = 211
Score = 59.2 bits (143), Expect = 3e-10
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 2/117 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG-YEVVS-CNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ +D +R L + L EVV +NG A D RE ++L D+ MP MDG
Sbjct: 2 KVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDG 61
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
+E ++ PD+KV+ +T A + L K +LV + +
Sbjct: 62 LEALKQLRARGPDIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVA 118
>gnl|CDD|33728 COG3947, COG3947, Response regulator containing CheY-like receiver
and SARP domains [Signal transduction mechanisms].
Length = 361
Score = 58.8 bits (142), Expect = 3e-10
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
+I++ +DD + + L L +AG+EV SC++ A D + L+ DIVMP M+GIE
Sbjct: 2 RIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVFKPDLIFLDIVMPYMNGIE 61
Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
A + +++ + ++FI+ A A DS L KP L ++R L
Sbjct: 62 FAEQVRDIESAVPIIFISSHAEYAD--DSFGMNLDDYLPKPVTPEKLNRAIDRRL 114
>gnl|CDD|34205 COG4567, COG4567, Response regulator consisting of a CheY-like
receiver domain and a Fis-type HTH domain [Signal
transduction mechanisms / Transcription].
Length = 182
Score = 53.0 bits (127), Expect = 2e-08
Identities = 21/85 (24%), Positives = 45/85 (52%)
Query: 3 QKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI 62
+ +LL +DD R L +A+ + G+ VV+ + A R P + + D+ + + G+
Sbjct: 10 KSLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVVDLKLGDGSGL 69
Query: 63 ELARRATELDPDLKVMFITGFAAVA 87
+ E D++++ +TG+A++A
Sbjct: 70 AVIEALRERRADMRIVVLTGYASIA 94
>gnl|CDD|33090 COG3279, LytT, Response regulator of the LytR/AlgR family
[Transcription / Signal transduction mechanisms].
Length = 244
Score = 52.7 bits (126), Expect = 3e-08
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
Query: 4 KILLAEDDDDMRRFL--IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
K+L+ +D+ R L I V NG A ++ L+ DI MP+++G
Sbjct: 3 KVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGLRPDLVFLDIAMPDING 62
Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
IELA R + DP ++F+T A+ + + L KP L + RL
Sbjct: 63 IELAARIRKGDPRPAIVFVTAHDEYAV--AAFEVEALDYLLKPISEERLAKTLERLR 117
>gnl|CDD|35739 KOG0519, KOG0519, KOG0519, Sensory transduction histidine kinase
[Signal transduction mechanisms].
Length = 786
Score = 52.4 bits (125), Expect = 3e-08
Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 12/122 (9%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVR-EEPFSLLLTDIVMPEMDGI 62
KILL +D+ R+ L K G EV N+G A DK++ + ++ D+ MPEMDG
Sbjct: 668 KILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKPPHSYDVIFMDLQMPEMDGY 727
Query: 63 ELARRATE-LDPDLKVMFITGFAAVALNPDSNAPKNAKV-----LSKPFHLRDLVNEVNR 116
E R + L ++ +T A S + +V LSKPF L LV +
Sbjct: 728 EATREIRKKERWHLPIVALTADAD-----PSTEEECLEVGMDGYLSKPFTLEKLVKILRE 782
Query: 117 LL 118
L
Sbjct: 783 FL 784
>gnl|CDD|164540 CHL00148, orf27, Ycf27; Reviewed.
Length = 240
Score = 50.1 bits (120), Expect = 2e-07
Identities = 24/86 (27%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 2 NQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
+KIL+ +D+ +R+ L L GYEV++ ++G A R+E L++ D++MP++DG
Sbjct: 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPKLDG 65
Query: 62 IELARRATELDPDLKVMFITGFAAVA 87
+ + + + D+ ++ +T V+
Sbjct: 66 YGVCQEIRK-ESDVPIIMLTALGDVS 90
>gnl|CDD|34203 COG4565, CitB, Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms].
Length = 224
Score = 47.9 bits (114), Expect = 6e-07
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 4 KILLAEDD---DDMRRFLIKALGKAGYEVV-SCNNGASAYDKVREEPFSLLLTDIVMPEM 59
+L+ EDD ++ R +K + G+ VV + A + E L+L DI MP+
Sbjct: 2 NVLIIEDDPMVAEIHRRYVKQI--PGFSVVGTAGTLEEAKMIIEEFKPDLILLDIYMPDG 59
Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV--LSKPFHLRDLVNEVNR 116
+GIEL + V+ IT AA + A + V L KPF L + R
Sbjct: 60 NGIELLPELRSQHYPVDVIVIT--AASDMETIKEALRYGVVDYLIKPFTFERLQQALTR 116
>gnl|CDD|32383 COG2201, CheB, Chemotaxis response regulator containing a
CheY-like receiver domain and a methylesterase domain
[Cell motility and secretion / Signal transduction
mechanisms].
Length = 350
Score = 39.5 bits (92), Expect = 2e-04
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 4 KILLAEDDDDMRRFLIKALGKAG--YEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG 61
++L+ +D MR+ + L V + NG A DKV++ ++ D+ MP MDG
Sbjct: 3 RVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKLKPDVITLDVEMPVMDG 62
Query: 62 IELARRATELDPDLKVMFIT 81
+E R+ L P L V+ ++
Sbjct: 63 LEALRKIMRLRP-LPVIMVS 81
>gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator
output domain [Signal transduction mechanisms].
Length = 194
Score = 30.6 bits (69), Expect = 0.10
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSC-NNGASAYDKVREEPFSLLLTDIVMPEM 59
M ++L+A+D+ R + + L +AGY+ V +G A + +++ DI MP
Sbjct: 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERLQPDVVILDIEMPRR 63
Query: 60 DGIELARRATELDPDLKVMFI 80
D IE A+E V
Sbjct: 64 DIIEALLLASENVARPIVALT 84
>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding
domain of ATP-binding cassette transporter-like systems
that belong to the type I periplasmic binding fold
protein superfamily. Periplasmic binding domain of
ATP-binding cassette transporter-like systems that
belong to the type I periplasmic binding fold protein
superfamily. They are mostly present in archaea and
eubacteria, and are primarily involved in scavenging
solutes from the environment. ABC-type transporters
couple ATP hydrolysis with the uptake and efflux of a
wide range of substrates across bacterial membranes,
including amino acids, peptides, lipids and sterols, and
various drugs. These systems are comprised of
transmembrane domains, nucleotide binding domains, and
in most bacterial uptake systems, periplasmic binding
proteins (PBPs) which transfer the ligand to the
extracellular gate of the transmembrane domains. These
PBPs bind their substrates selectively and with high
affinity. Members of this group include ABC-type
Leucine-Isoleucine-Valine-Binding Proteins (LIVBP),
which are homologous to the aliphatic amidase
transcriptional repressor, AmiC, of Pseudomonas
aeruginosa. The uncharacterized periplasmic components
of various ABC-type transport systems are included in
this group.
Length = 298
Score = 27.4 bits (61), Expect = 1.1
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 32/110 (29%)
Query: 6 LLAEDDD---DMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTD--------- 53
++ +D + +AL K G EVV+ EE + TD
Sbjct: 140 IIYDDYAYGRGLAAAFREALKKLGGEVVA------------EETYPPGATDFSPLIAKLK 187
Query: 54 --------IVMPEMDGIELARRATELDPDLKVMFITGFAAVALNPDSNAP 95
+ D ++A E + ++ G AA AL +
Sbjct: 188 AAGPDAVFLAGYGGDAALFLKQAREAGLKVPIVGGDGAAAPALLELAGDA 237
>gnl|CDD|30592 COG0243, BisC, Anaerobic dehydrogenases, typically
selenocysteine-containing [Energy production and
conversion].
Length = 765
Score = 27.0 bits (59), Expect = 1.2
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 1/82 (1%)
Query: 25 AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGI-ELARRATELDPDLKVMFITGF 83
+V VR + G+ R E +K +F+ G
Sbjct: 382 GARDVGGLVKPLPGLPVVRAKTAIPWGRPTDAAAKPGLSTADRALLEGPYPIKALFVYGG 441
Query: 84 AAVALNPDSNAPKNAKVLSKPF 105
V PD K A + F
Sbjct: 442 NPVVSAPDDRNVKKALLRDDEF 463
>gnl|CDD|39020 KOG3816, KOG3816, KOG3816, Cell differentiation regulator of the
Headcase family [Signal transduction mechanisms].
Length = 526
Score = 27.0 bits (59), Expect = 1.2
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 9 EDD-----DDMRRFLIKALGKAGYEVVSC 32
EDD D++R F++K+LG + V C
Sbjct: 355 EDDCPQGGDEVRLFILKSLGASNLRAVPC 383
>gnl|CDD|111722 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta
C-terminal domain. L-lactate dehydrogenases are
metabolic enzymes which catalyse the conversion of
L-lactate to pyruvate, the last step in anaerobic
glycolysis. L-2-hydroxyisocaproate dehydrogenases are
also members of the family. Malate dehydrogenases
catalyse the interconversion of malate to oxaloacetate.
The enzyme participates in the citric acid cycle.
L-lactate dehydrogenase is also found as a lens
crystallin in bird and crocodile eyes.
Length = 173
Score = 26.5 bits (59), Expect = 1.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAY 39
+D D LI+ + AGYEV+ G++ Y
Sbjct: 55 ENLKDTDWELEELIERVQNAGYEVIEAKAGSTTY 88
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases..
Length = 139
Score = 25.8 bits (57), Expect = 3.1
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 15 RRFLIKALGKAGYEV----VSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIELARRATE 70
RR +++ L + G + V +NGA+ Y DI P D + A +
Sbjct: 51 RREVLELLEELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG 110
Query: 71 LDPDLKVMFI 80
+DP+ +V+ +
Sbjct: 111 VDPE-EVLMV 119
>gnl|CDD|30494 COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 674
Score = 25.0 bits (54), Expect = 4.8
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 85 AVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLL 118
AV L+ D KVL+ P +VN RL
Sbjct: 16 AVLLDEDGGVLATIKVLTTPDLPSGIVNAGIRLA 49
>gnl|CDD|147269 pfam05002, SGS, SGS domain. This domain was thought to be unique
to the SGT1-like proteins, but is also found in
calcyclin binding proteins.
Length = 78
Score = 25.1 bits (55), Expect = 5.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEP 46
K + + DDD +R ++K+ ++ V+S N KV +P
Sbjct: 27 KKIYKDGDDDTKRAMMKSFVESNGTVLSTNWDEVGKKKVETKP 69
>gnl|CDD|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin
reductase-like proteins catalyze electron transfer
between an NAD(P)-binding sub-domain of the alpha/beta
class and a discrete (usually N-terminal) domain, which
varies in orientation with respect to the NAD(P)
binding domain. The N-terminal domain may contain a
flavin prosthetic group (as in flavoenzymes) or use
flavin as a substrate. Ferredoxin is reduced in the
final stage of photosystem I. The flavoprotein
Ferredoxin-NADP+ reductase transfers electrons from
reduced ferredoxin to FAD (forming FADH2 via a
semiquinone intermediate) which then transfers a
hydride ion to convert NADP+ to NADPH..
Length = 216
Score = 24.5 bits (54), Expect = 7.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 8 AEDDDDMRRFLIKALG 23
A D D RF IKALG
Sbjct: 49 APDPDGRLRFTIKALG 64
>gnl|CDD|153382 cd07370, HPCD, The Class III extradiol dioxygenase,
homoprotocatechuate 2,3-dioxygenase, catalyzes the key
ring cleavage step in the metabolism of
homoprotocatechuate. 3,4-dihydroxyphenylacetate
(homoprotocatechuate) 2,3-dioxygenase (HPCD) catalyzes
the key ring cleavage step in the metabolism of
homoprotocatechuate (hpca), a central intermediate in
the bacterial degradation of aromatic compounds. The
enzyme incorporates both atoms of molecular oxygen into
hpca, resulting in aromatic ring-opening to yield
alpha-hydroxy-delta-carboxymethyl cis-muconic
semialdehyde. HPCD is a member of the class III
extradiol dioxygenase family, a group of enzymes which
use a non-heme Fe(II) to cleave aromatic rings between
a hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 280
Score = 24.6 bits (54), Expect = 7.9
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 13/41 (31%)
Query: 54 IVMPEMDG-------------IELARRATELDPDLKVMFIT 81
+++ E G E+ RRA EL D V+F T
Sbjct: 14 MMLSEQPGPNKGCRQAAIDGLKEIGRRARELGVDTIVVFDT 54
>gnl|CDD|36775 KOG1562, KOG1562, KOG1562, Spermidine synthase [Amino acid
transport and metabolism].
Length = 337
Score = 24.1 bits (52), Expect = 8.9
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 34 NGASAYDKVREEPFSLLLTDIVMPEMDGIEL 64
+G + ++E PF +++TD P L
Sbjct: 183 DGFLFLEDLKENPFDVIITDSSDPVGPACAL 213
>gnl|CDD|144681 pfam01177, Asp_Glu_race, Asp/Glu/Hydantoin racemase. This family
contains aspartate racemase, glutamate racemase,
hydantoin racemase and arylmalonate decarboxylase.
Length = 212
Score = 24.3 bits (53), Expect = 9.2
Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 6 LLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYD-----KVREEPFSLLLTDIVMPEMD 60
+LA + + L +AG EVV+ + ++ E L + D
Sbjct: 111 VLATYGTIVSGLYQELLAEAGIEVVAPAIRLGIVEVLELGRIEEASVEALAAALERLAED 170
Query: 61 GIE-----------LARRATELDPDLKVMFITGFAAVA 87
G + L L+P+L V I A+A
Sbjct: 171 GADAVILGCTELPLLLELIEALEPELGVPVIDSNQALA 208
>gnl|CDD|147313 pfam05066, RNA_pol_delta, DNA-directed RNA polymerase delta
subunit. The delta protein is a dispensable subunit of
Bacillus subtilis RNA polymerase (RNAP) that has major
effects on the biochemical properties of the purified
enzyme. In the presence of delta, RNAP displays an
increased specificity of transcription, a decreased
affinity for nucleic acids, and an increased efficiency
of RNA synthesis because of enhanced recycling. The
delta protein, contains two distinct regions, an
N-terminal domain and a glutamate and aspartate
residue-rich carboxyl-terminal region.
Length = 94
Score = 24.1 bits (53), Expect = 9.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 103 KPFHLRDLVNEVNRLLTIKN 122
KP DLVNE+ +LL I +
Sbjct: 29 KPMTFDDLVNEIQKLLGISD 48
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.136 0.380
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,447,710
Number of extensions: 69071
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 51
Length of query: 122
Length of database: 6,263,737
Length adjustment: 82
Effective length of query: 40
Effective length of database: 4,491,799
Effective search space: 179671960
Effective search space used: 179671960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.4 bits)