RPSBLAST alignment of GI: 254780312 and protein with PDBid: 3cnb
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143
Score = 68.1 bits (166), Expect = 5e-13
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 4/121 (3%)
Query: 2 NQKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
+ IL+ EDD + L + L ++ N A D + +++ D++M M
Sbjct: 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGM 67
Query: 60 DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
DG + ++T ++ V+ +TG A KP + L + +L
Sbjct: 68 DGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127
Query: 118 L 118
+
Sbjct: 128 V 128