RPSBLAST alignment of GI: 254780312 and protein with PDBid: 3cnb

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structure initiative, PSI-2; 2.00A {Colwellia psychrerythraea 34H} Length = 143
 Score = 68.1 bits (166), Expect = 5e-13
 Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 4/121 (3%)

Query: 2   NQKILLAEDDDDMRRFLIKALGK--AGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEM 59
           +  IL+ EDD +    L + L       ++    N   A D +      +++ D++M  M
Sbjct: 8   DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGM 67

Query: 60  DGIELAR--RATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRL 117
           DG  +    ++T    ++ V+ +TG           A        KP +   L   + +L
Sbjct: 68  DGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQL 127

Query: 118 L 118
           +
Sbjct: 128 V 128