BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] (122 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 122 Score = 247 bits (630), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 122/122 (100%), Positives = 122/122 (100%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD Sbjct: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI Sbjct: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120 Query: 121 KN 122 KN Sbjct: 121 KN 122 >gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid protein [Candidatus Liberibacter asiaticus str. psy62] Length = 803 Score = 73.6 bits (179), Expect = 1e-15, Method: Composition-based stats. Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%) Query: 5 ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61 +LL ED+D +RR + L GY V +G A KV E+ ++++D+VMPEMDG Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742 Query: 62 IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118 L R + P LK +FI+G+A A + N PK+AK LSKPF L+ L V+ LL Sbjct: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799 >gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 123 Score = 40.4 bits (93), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 1 MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60 M +K+++ ED++ + + +GY + NG A + R+ +++ DI + E+ Sbjct: 1 MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60 Query: 61 GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117 G+E+ ++ E D +L+ + + A A+ D + +SKP L + + + Sbjct: 61 GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119 Query: 118 L 118 + Sbjct: 120 I 120 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 26.9 bits (58), Expect = 0.10, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 11/16 (68%) Query: 82 GFAAVALNPDSNAPKN 97 GF V L+PDSN P N Sbjct: 26 GFCTVILDPDSNCPAN 41 >gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus str. psy62] Length = 236 Score = 26.6 bits (57), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/111 (19%), Positives = 45/111 (40%) Query: 4 KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63 +ILL EDD + + L + V + G + + F ++ D+ + ++ G E Sbjct: 2 RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61 Query: 64 LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114 + R V ++G +++ +SKPF+ +LV + Sbjct: 62 VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112 >gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 299 Score = 25.4 bits (54), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 35/117 (29%) Query: 20 KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-------IELARR----- 67 K LG A V C A + + + PF+LLL D++M ++G I+L + Sbjct: 112 KGLGHA----VWC-----ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI 162 Query: 68 --ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122 +E DP L + G V D FH+ D++ + + I N Sbjct: 163 LAVSECDPQLSCKY--GMVQVGKAIDHQV----------FHISDMIEKPDSSTFISN 207 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 24.3 bits (51), Expect = 0.71, Method: Compositional matrix adjust. Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Query: 60 DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103 DG++L RR +LD +++ ++ G PD K++ SK Sbjct: 516 DGVDLLRRTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSK 554 >gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 429 Score = 20.8 bits (42), Expect = 7.4, Method: Composition-based stats. Identities = 7/29 (24%), Positives = 18/29 (62%) Query: 16 RFLIKALGKAGYEVVSCNNGASAYDKVRE 44 + L++ K G++ ++C++ A +VR+ Sbjct: 370 KVLMQEAKKLGFQAMACSSMIEALSRVRK 398 >gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus str. psy62] Length = 294 Score = 20.8 bits (42), Expect = 8.7, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%) Query: 19 IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE------LARRATEL 71 IK G E+ G Y+ +R+E S+++ I + G++ +AR+ T L Sbjct: 106 IKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSL 164 >gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter asiaticus str. psy62] Length = 211 Score = 20.4 bits (41), Expect = 9.4, Method: Compositional matrix adjust. Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 18 LIKALGKAGYEVVSCNNGA 36 LI+AL K G+E+ NG Sbjct: 103 LIQALNKRGFEIAVETNGT 121 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.136 0.380 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,660 Number of Sequences: 1233 Number of extensions: 2491 Number of successful extensions: 18 Number of sequences better than 100.0: 15 Number of HSP's better than 100.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 2 Number of HSP's gapped (non-prelim): 15 length of query: 122 length of database: 328,796 effective HSP length: 64 effective length of query: 58 effective length of database: 249,884 effective search space: 14493272 effective search space used: 14493272 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 33 (17.3 bits)