BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780312|ref|YP_003064725.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
         (122 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780312|ref|YP_003064725.1| response regulator receiver protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 122

 Score =  247 bits (630), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 122/122 (100%), Positives = 122/122 (100%)

Query: 1   MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
           MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD
Sbjct: 1   MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60

Query: 61  GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120
           GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI
Sbjct: 61  GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTI 120

Query: 121 KN 122
           KN
Sbjct: 121 KN 122


>gi|254780450|ref|YP_003064863.1| two-component sensor histidine kinase/response regulator hybrid
           protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 803

 Score = 73.6 bits (179), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 68/119 (57%), Gaps = 8/119 (6%)

Query: 5   ILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREE---PFSLLLTDIVMPEMDG 61
           +LL ED+D +RR   + L   GY V    +G  A  KV E+      ++++D+VMPEMDG
Sbjct: 684 VLLVEDEDSVRRGSKRMLETRGYTVHEAFSGTDAL-KVMEKLQGRVDIVISDVVMPEMDG 742

Query: 62  IELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAK--VLSKPFHLRDLVNEVNRLL 118
             L R   +  P LK +FI+G+A  A +   N PK+AK   LSKPF L+ L   V+ LL
Sbjct: 743 PTLLRELRKTYPSLKFIFISGYAEDAFS--KNLPKDAKFSFLSKPFSLKQLATSVHELL 799


>gi|254780476|ref|YP_003064889.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 123

 Score = 40.4 bits (93), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 25/121 (20%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 1   MNQKILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMD 60
           M +K+++ ED++   +     +  +GY  +   NG  A +  R+    +++ DI + E+ 
Sbjct: 1   MLKKVMIVEDNELNMKLFRDLIETSGYIALQTRNGMEALELARQHKPDVIIMDIQLQEIS 60

Query: 61  GIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKV---LSKPFHLRDLVNEVNRL 117
           G+E+ ++  E D +L+ + +    A A+  D    +       +SKP  L   +  + + 
Sbjct: 61  GLEITKQIKE-DSELQEIPVIAVTAFAMKGDEERIRKGGCEAYISKPISLSIFMETIKKY 119

Query: 118 L 118
           +
Sbjct: 120 I 120


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
          [Candidatus Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 26.9 bits (58), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 82 GFAAVALNPDSNAPKN 97
          GF  V L+PDSN P N
Sbjct: 26 GFCTVILDPDSNCPAN 41


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 26.6 bits (57), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/111 (19%), Positives = 45/111 (40%)

Query: 4   KILLAEDDDDMRRFLIKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE 63
           +ILL EDD  +   +   L    + V   + G    +  +   F  ++ D+ + ++ G E
Sbjct: 2   RILLIEDDKALAHSIELMLKSENFNVYVTDLGEDGIELCKFYEFDAIILDLGLTDIPGFE 61

Query: 64  LARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEV 114
           + R          V  ++G +++              +SKPF+  +LV  +
Sbjct: 62  VLRALRVAKISTPVCILSGMSSIEDKVRGLQSGADDYISKPFNKEELVARI 112


>gi|254780365|ref|YP_003064778.1| UTP-glucose-1-phosphate uridylyltransferase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 299

 Score = 25.4 bits (54), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 35/117 (29%)

Query: 20  KALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDG-------IELARR----- 67
           K LG A    V C     A + + + PF+LLL D++M  ++G       I+L  +     
Sbjct: 112 KGLGHA----VWC-----ARNIIGDNPFALLLPDMIMSPLEGENCMANMIKLYEKEGANI 162

Query: 68  --ATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSKPFHLRDLVNEVNRLLTIKN 122
              +E DP L   +  G   V    D             FH+ D++ + +    I N
Sbjct: 163 LAVSECDPQLSCKY--GMVQVGKAIDHQV----------FHISDMIEKPDSSTFISN 207


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 24.3 bits (51), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 5/44 (11%)

Query: 60  DGIELARRATELDPDLKVMFITGFAAVALNPDSNAPKNAKVLSK 103
           DG++L RR  +LD  +++ ++ G       PD    K++   SK
Sbjct: 516 DGVDLLRRTVKLDKGIQLKYLGG-----EKPDFRGYKSSGFKSK 554


>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 429

 Score = 20.8 bits (42), Expect = 7.4,   Method: Composition-based stats.
 Identities = 7/29 (24%), Positives = 18/29 (62%)

Query: 16  RFLIKALGKAGYEVVSCNNGASAYDKVRE 44
           + L++   K G++ ++C++   A  +VR+
Sbjct: 370 KVLMQEAKKLGFQAMACSSMIEALSRVRK 398


>gi|254780616|ref|YP_003065029.1| F0F1 ATP synthase subunit gamma [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 294

 Score = 20.8 bits (42), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 19  IKALGKAGYEVVSCNNGASAYDKVREEPFSLLLTDIVMPEMDGIE------LARRATEL 71
           IK     G E+     G   Y+ +R+E  S+++  I +    G++      +AR+ T L
Sbjct: 106 IKEFIAEGKEIKLLIIGRKGYEGLRKEFSSMIIDSIELSSKKGVDFVQAHGIARQITSL 164


>gi|254780202|ref|YP_003064615.1| hypothetical protein CLIBASIA_00435 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 211

 Score = 20.4 bits (41), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 18  LIKALGKAGYEVVSCNNGA 36
           LI+AL K G+E+    NG 
Sbjct: 103 LIQALNKRGFEIAVETNGT 121


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.136    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,660
Number of Sequences: 1233
Number of extensions: 2491
Number of successful extensions: 18
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 15
length of query: 122
length of database: 328,796
effective HSP length: 64
effective length of query: 58
effective length of database: 249,884
effective search space: 14493272
effective search space used: 14493272
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)