HHsearch alignment for GI: 254780313 and conserved domain: COG0030
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].
Probab=95.85 E-value=0.041 Score=33.69 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=58.4
Q ss_pred HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHH
Q ss_conf 999986458313796788850455306899999706878832786411213---------33469817830112207999
Q gi|254780313|r 55 LLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 55 L~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~ 125 (227)
T Consensus 19 ~~kIv~~a~~-~~~d~VlEIGpG~GaLT~~Ll~~~~------~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANI-SPGDNVLEIGPGLGALTEPLLERAA------RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHCCC-CCCCEEEEECCCCCHHHHHHHHHCC------EEEEEEECHHHHHHHHHHHCCCCCEEEEECCHHCCCCH
T ss_conf 9999985578-9998699978987788999996069------57999968899999997506566559994724247513
Q ss_pred HHHHHHCCCCCCEEEECCCHHHCC
Q ss_conf 999973138874897532021102
Q gi|254780313|r 126 EFIRQAIGGNPDLVLSDMAYPTIG 149 (227)
Q Consensus 126 ~~i~~~l~~~~DlVlSDmapn~SG 149 (227)
T Consensus 92 ~l~------~~~~vVaNlPY~Iss 109 (259)
T COG0030 92 SLA------QPYKVVANLPYNISS 109 (259)
T ss_pred HHC------CCCEEEECCCCCCCH
T ss_conf 515------788899808976567