HHsearch alignment for GI: 254780313 and conserved domain: COG0742
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair].
Probab=94.73 E-value=0.23 Score=28.99 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=60.4
Q ss_pred CCCCC----CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC------------CCCCCCCEEEECCCCHHHHH
Q ss_conf 58313----796788850455306899999706878832786411213------------33469817830112207999
Q gi|254780313|r 62 HQILQ----SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD------------MEPILGVKFFKFDFLDLDSW 125 (227)
Q Consensus 62 f~l~k----~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~------------~~~i~gv~~~~gDi~~~~~~ 125 (227)
T Consensus 34 FNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-----GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----- 103 (187)
T COG0742 34 FNILAPDEIEGARVLDLFAGSGALGLEALSR-----GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----- 103 (187)
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHH-----
T ss_conf 9873434457988999468764768999857-----885699996598999999999998487612599840089-----
Q ss_pred HHHHHHCCCC--CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHH--HHHCCCCCCEEEEEEECC
Q ss_conf 9999731388--748975320211022210157889899988987--641148774699993059
Q gi|254780313|r 126 EFIRQAIGGN--PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFF--ALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 126 ~~i~~~l~~~--~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~--A~~~Lk~gG~fV~K~F~G 186 (227)
T Consensus 104 -~~L~~~~~~~~FDlVflD--PPy~-------~~l~~~~-~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 104 -RALKQLGTREPFDLVFLD--PPYA-------KGLLDKE-LALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred -HHHHHCCCCCCCCEEEEC--CCCC-------CCHHHHH-HHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf -998722778851289968--9975-------3606689-9998887658778896899982787