HHsearch alignment for GI: 254780313 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=97.75 E-value=0.00049 Score=45.73 Aligned_cols=147 Identities=20% Similarity=0.207 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CC----------CCCCCEEEE
Q ss_conf 4799999999986458313796788850455306899999706878832786411213-33----------469817830
Q gi|254780313|r 48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-ME----------PILGVKFFK 116 (227)
Q Consensus 48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~----------~i~gv~~~~ 116 (227)
T Consensus 185 lAR~mVNLa~v-------~~G~~vlDPFcGTGgiL-iEagl~G-----~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~ 251 (347)
T COG1041 185 LARAMVNLARV-------KRGELVLDPFCGTGGIL-IEAGLMG-----ARVIGSDIDERMVRGAKINLEYYGIEDYPVLK 251 (347)
T ss_pred HHHHHHHHHCC-------CCCCEEECCCCCCCHHH-HHHHHCC-----CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99998777416-------46987645767834888-8366427-----56760323799985566415662767616887
Q ss_pred C-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf 1-12207999999973138-874897532021102221-01578898999889876411487746999930599989999
Q gi|254780313|r 117 F-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL 193 (227)
Q Consensus 117 g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~-~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~ 193 (227)
T Consensus 252 ~~Da~~lp--------l~~~~vdaIatDP-P--YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~ 316 (347)
T COG1041 252 VLDATNLP--------LRDNSVDAIATDP-P--YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRH 316 (347)
T ss_pred ECCCCCCC--------CCCCCCCEEEECC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHH
T ss_conf 30221277--------8877423588469-9--87100245552899999999999987304848999617----86055
Q ss_pred HHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf 99986258469976866575582498983
Q gi|254780313|r 194 CLLKKHFQKVIHVKPVASRAESVEMFLLA 222 (227)
Q Consensus 194 ~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~ 222 (227)
T Consensus 317 ~~~~~~f~v~~~~~~~~H~sLtR~i~v~~ 345 (347)
T COG1041 317 ELEELGFKVLGRFTMRVHGSLTRVIYVVR 345 (347)
T ss_pred HHHHCCCEEEEEEEEEECCCEEEEEEEEE
T ss_conf 67643965999997764174689999986