HHsearch alignment for GI: 254780313 and conserved domain: COG1041

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=97.75  E-value=0.00049  Score=45.73  Aligned_cols=147  Identities=20%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC-CC----------CCCCCEEEE
Q ss_conf             4799999999986458313796788850455306899999706878832786411213-33----------469817830
Q gi|254780313|r   48 RARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD-ME----------PILGVKFFK  116 (227)
Q Consensus        48 rsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~-~~----------~i~gv~~~~  116 (227)
T Consensus       185 lAR~mVNLa~v-------~~G~~vlDPFcGTGgiL-iEagl~G-----~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~  251 (347)
T COG1041         185 LARAMVNLARV-------KRGELVLDPFCGTGGIL-IEAGLMG-----ARVIGSDIDERMVRGAKINLEYYGIEDYPVLK  251 (347)
T ss_pred             HHHHHHHHHCC-------CCCCEEECCCCCCCHHH-HHHHHCC-----CEEEECCHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99998777416-------46987645767834888-8366427-----56760323799985566415662767616887


Q ss_pred             C-CCCHHHHHHHHHHHCCC-CCCEEEECCCHHHCCCCC-CHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHH
Q ss_conf             1-12207999999973138-874897532021102221-01578898999889876411487746999930599989999
Q gi|254780313|r  117 F-DFLDLDSWEFIRQAIGG-NPDLVLSDMAYPTIGHRK-IDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDIL  193 (227)
Q Consensus       117 g-Di~~~~~~~~i~~~l~~-~~DlVlSDmapn~SG~~~-~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~  193 (227)
T Consensus       252 ~~Da~~lp--------l~~~~vdaIatDP-P--YGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----~~~~~  316 (347)
T COG1041         252 VLDATNLP--------LRDNSVDAIATDP-P--YGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----RDPRH  316 (347)
T ss_pred             ECCCCCCC--------CCCCCCCEEEECC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----CCCHH
T ss_conf             30221277--------8877423588469-9--87100245552899999999999987304848999617----86055


Q ss_pred             HHHHHHCCEEEEECCCCCCCCCCEEEEEE
Q ss_conf             99986258469976866575582498983
Q gi|254780313|r  194 CLLKKHFQKVIHVKPVASRAESVEMFLLA  222 (227)
Q Consensus       194 ~~l~~~F~~V~~~KP~aSR~~S~E~Ylv~  222 (227)
T Consensus       317 ~~~~~~f~v~~~~~~~~H~sLtR~i~v~~  345 (347)
T COG1041         317 ELEELGFKVLGRFTMRVHGSLTRVIYVVR  345 (347)
T ss_pred             HHHHCCCEEEEEEEEEECCCEEEEEEEEE
T ss_conf             67643965999997764174689999986