HHsearch alignment for GI: 254780313 and conserved domain: COG1889

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=97.06  E-value=0.0045  Score=39.70  Aligned_cols=120  Identities=18%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEC--------CCCC-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             13796788850455306899999706878832786411--------2133-34698178301122079999999731388
Q gi|254780313|r   65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAID--------ILDM-EPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVD--------l~~~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~----~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~----Ve~  145 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG----EGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL----VEK  145 (231)
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHCCC----CCCEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHH----CCC
T ss_conf             69998789950367985767776047----8708999964446999999987478740020136883776531----245


Q ss_pred             CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC--EEEEEEEC---CCCHHH-----HHHHHHHHCCEEEE
Q ss_conf             748975320211022210157889899988987641148774--69999305---999899-----99999862584699
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGG--DFLVKTFQ---GGTTND-----ILCLLKKHFQKVIH  205 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG--~fV~K~F~---G~~~~~-----l~~~l~~~F~~V~~  205 (227)
T Consensus       146 VDviy~DVAQ-------p~Qa~I------~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~f~i~e~  212 (231)
T COG1889         146 VDVIYQDVAQ-------PNQAEI------LADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGGFEILEV  212 (231)
T ss_pred             CCEEEEECCC-------CHHHHH------HHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             4389983688-------107899------998899732169739999985123045898999999999998569504677