HHsearch alignment for GI: 254780313 and conserved domain: COG2813
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].
Probab=97.80 E-value=0.00053 Score=45.54 Aligned_cols=118 Identities=19% Similarity=0.283 Sum_probs=76.5
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCCCC
Q ss_conf 967888504553068999997068788327864112133-----------346981783011220799999997313887
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGGNP 136 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~ 136 (227)
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p----~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~---------v~~kf 225 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSP----QAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEP---------VEGKF 225 (300)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCC---------CCCCC
T ss_conf 99688707884299999998689----872899826699999988769973987637998124466---------54400
Q ss_pred CEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 48975320211022210157889899988987641148774699993059998999999986258469976
Q gi|254780313|r 137 DLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 137 DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
T Consensus 226 d~IisN--PPfh~G~~v~~----~~~~~ii~~A~~~L~~gGeL~iVan---~~l~y~~~L~~~Fg~v~~la 287 (300)
T COG2813 226 DLIISN--PPFHAGKAVVH----SLAQEIIAAAARHLKPGGELWIVAN---RHLPYEKKLKELFGNVEVLA 287 (300)
T ss_pred CEEEEC--CCCCCCCCHHH----HHHHHHHHHHHHHHCCCCEEEEEEC---CCCCHHHHHHHHCCCEEEEE
T ss_conf 689848--88467710167----8899999999976045977999975---88896899998628779998