HHsearch alignment for GI: 254780313 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=97.99 E-value=6.3e-05 Score=51.32 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC--------C-CCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 13796788850455306899999706878832786411213--------3-34698178301122079999999731388
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD--------M-EPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~--------~-~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 70 i~~gskVLYLGAasGTTVSHvsDiV~----~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~---v-~~ 141 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE----EGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHL---V-EK 141 (226)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHCC----CCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---C-CC
T ss_conf 58998799954777984888987517----9649999827077899999985089962575467884564420---5-65
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEE--EEEC--C-CC----HHHHHHHHH-HHCCEEEE
Q ss_conf 7489753202110222101578898999889876411487746999--9305--9-99----899999998-62584699
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLV--KTFQ--G-GT----TNDILCLLK-KHFQKVIH 205 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~--K~F~--G-~~----~~~l~~~l~-~~F~~V~~ 205 (227)
T Consensus 142 VD~i~qDvA-------Q~dQa~------I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf~~~~~~L~~~~~~~~e~ 208 (226)
T PRK04266 142 VDVIYQDVA-------QPNQAE------IAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIFKEEIKKLEEGGFEILEV 208 (226)
T ss_pred CCEEEEECC-------CHHHHH------HHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 658996067-------742899------9999999860159889999974235646898999999999998769966899
Q ss_pred E
Q ss_conf 7
Q gi|254780313|r 206 V 206 (227)
Q Consensus 206 ~ 206 (227)
T Consensus 209 i 209 (226)
T PRK04266 209 V 209 (226)
T ss_pred E
T ss_conf 8