HHsearch alignment for GI: 254780313 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=99.19 E-value=1.9e-10 Score=85.91 Aligned_cols=123 Identities=20% Similarity=0.208 Sum_probs=82.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCC-CCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 3796788850455306899999706878832786411213---------33469-8178301122079999999731388
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPIL-GVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~-gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 244 ~~g~~VLD~CAaPGGKt~~la~~-~~---~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~-----~~~~~~ 314 (428)
T PRK10901 244 QNGEHILDLCAAPGGKTTHILEV-AP---EAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQ-----WCGEQQ 314 (428)
T ss_pred CCCCEEEEECCCCCHHHHHHHHH-CC---CCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHH-----HCCCCC
T ss_conf 88987987168876689999996-45---8928999698889999999999759973999776557233-----134456
Q ss_pred CCEEEECCCHHHCCCCCC-------------HHHHHHHHHHHHHHHHHHCCCCCCEEE---EEEECCCCHHHHHHHHHHH
Q ss_conf 748975320211022210-------------157889899988987641148774699---9930599989999999862
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKI-------------DHLRTMSLCEAATFFALEMLNIGGDFL---VKTFQGGTTNDILCLLKKH 199 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~-------------D~~~~~~L~~~al~~A~~~Lk~gG~fV---~K~F~G~~~~~l~~~l~~~ 199 (227)
T Consensus 315 fD~ILlD-a-PCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~~ 392 (428)
T PRK10901 315 FDRILLD-A-PCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQRT 392 (428)
T ss_pred CCEEEEC-C-CCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 7879975-8-9888724446854211289999999999999999999986688988999989999577899999999859