HHsearch alignment for GI: 254780313 and conserved domain: PRK10909
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=94.55 E-value=0.28 Score=28.48 Aligned_cols=99 Identities=11% Similarity=0.017 Sum_probs=58.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CC--CCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 796788850455306899999706878832786411213---------33--4698178301122079999999731388
Q gi|254780313|r 67 SNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------ME--PILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 67 ~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~--~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 52 ~~~~vLDLFAGSGalGlEALSR-----GA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da-----~~~L-~~~~~~ 120 (198)
T PRK10909 52 VDARCLDCFAGSGALGLEALSR-----YAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNA-----LSFL-AQPGTP 120 (198)
T ss_pred CCCEEEECCCCCCHHHHHHHHC-----CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHH-----HHHH-HCCCCC
T ss_conf 9987998277746889999987-----9978999978999999999999984888679995569-----9986-255995
Q ss_pred CCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 748975320211022210157889899988987641148774699993059
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQG 186 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~G 186 (227)
T Consensus 121 fDlIF~D--PPY~~---~~~~---~~l~--~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 121 HNVVFVD--PPFRK---GLLE---ETIN--LLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred EEEEEEC--CCCCC---CHHH---HHHH--HHHHCCCCCCCCEEEEEECCC
T ss_conf 2189989--99765---5599---9999--999888918996999995488