HHsearch alignment for GI: 254780313 and conserved domain: PRK11760
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional.
Probab=99.26 E-value=1.2e-11 Score=93.40 Aligned_cols=131 Identities=24% Similarity=0.248 Sum_probs=86.6
Q ss_pred HHHCCHHHHHHHHHHHHHHC-------CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCC----CCC
Q ss_conf 88184479999999998645-------8313796788850455306899999706878832786411213334----698
Q gi|254780313|r 43 QLEGWRARSAYKLLQINEKH-------QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEP----ILG 111 (227)
Q Consensus 43 k~~gyrsRaafKL~eId~kf-------~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~----i~g 111 (227)
T Consensus 179 ~P~~APSRStLKLEEA~~~Fip~~e~~~rl~~Gm~aVDLGAaPGGWT~qLv~r------g~~V~AVDnG~m~~~L~~~~~ 252 (356)
T PRK11760 179 FPADAPSRSTLKLEEAFHVFIPREEWDERLASGMRAVDLGACPGGWTYQLVRR------GMFVTAVDNGPMAESLMDTGQ 252 (356)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEECCCCCCHHHHHHHHC------CCEEEEECCCCCCHHHHCCCC
T ss_conf 89889846888799999986798676532169975875586997058999977------988998658767875752887
Q ss_pred CEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC----CEEEEEEECCC
Q ss_conf 17830112207999999973138874897532021102221015788989998898764114877----46999930599
Q gi|254780313|r 112 VKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIG----GDFLVKTFQGG 187 (227)
Q Consensus 112 v~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~g----G~fV~K~F~G~ 187 (227)
T Consensus 253 V~H~~~dgf~f~P-------~~~~vdwlVCDmve--------kP~rva~l-------m~~Wl~~gw~~~aifnLKLPMKk 310 (356)
T PRK11760 253 VEHLRADGFKFRP-------TRKNVDWLVCDMVE--------KPARVAEL-------MAQWLVNGWCREAIFNLKLPMKK 310 (356)
T ss_pred EEEEECCCEEECC-------CCCCEEEEEEECCC--------CHHHHHHH-------HHHHHHCCCCHHEEEEECCCCCC
T ss_conf 5788146705636-------99852089970536--------88999999-------99987556002057885167766
Q ss_pred C---HHHHHHHHHHHCC
Q ss_conf 9---8999999986258
Q gi|254780313|r 188 T---TNDILCLLKKHFQ 201 (227)
Q Consensus 188 ~---~~~l~~~l~~~F~ 201 (227)
T Consensus 311 R~~eV~~~l~~i~~~l~ 327 (356)
T PRK11760 311 RYEEVRQCLERIEEQLD 327 (356)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 39999999999999998