HHsearch alignment for GI: 254780313 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=94.48 E-value=0.3 Score=28.31 Aligned_cols=103 Identities=19% Similarity=0.321 Sum_probs=65.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C--CCC--CCCEEEECCCCHHHHHHHHHHHC
Q ss_conf 3796788850455306899999706878832786411213---------3--346--98178301122079999999731
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M--EPI--LGVKFFKFDFLDLDSWEFIRQAI 132 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~--~~i--~gv~~~~gDi~~~~~~~~i~~~l 132 (227)
T Consensus 551 a~gk~fLNLF~YTgt~sv~Aa~-----gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~-----wl~~-~ 619 (716)
T PRK11783 551 AKGKRFLNLFAYTGTASVHAAL-----GGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLA-----WLKE-A 619 (716)
T ss_pred HCCCCEEEEEECCCCEEHHHHH-----CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHH-----HHHH-C
T ss_conf 0788464312225610213352-----796122786270879999999998549996347389640899-----9985-7
Q ss_pred CCCCCEEEECCCHHHCCCCCC--------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCC
Q ss_conf 388748975320211022210--------157889899988987641148774699993-0599
Q gi|254780313|r 133 GGNPDLVLSDMAYPTIGHRKI--------DHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGG 187 (227)
Q Consensus 133 ~~~~DlVlSDmapn~SG~~~~--------D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~ 187 (227)
T Consensus 620 ~~~fDli~~DP-PtFSnSk~m~~~~dvqrDh~~l-------i~~~~~~L~~~G~l~FS~N~r~F 675 (716)
T PRK11783 620 REQFDLIFIDP-PTFSNSKRMEDSFDVQRDHVAL-------IKLAMRLLRPGGTLYFSNNKRGF 675 (716)
T ss_pred CCCCCEEEECC-CCCCCCCCCCCCCCCCCCHHHH-------HHHHHHHCCCCCEEEEECCCCCC
T ss_conf 77667899889-9998766678863220309999-------99999860899689996288763