HHsearch alignment for GI: 254780313 and conserved domain: PRK11933
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed.
Probab=99.33 E-value=3.9e-11 Score=90.24 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCC--CCCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 13796788850455306899999706878832786411213---------334--6981783011220799999997313
Q gi|254780313|r 65 LQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEP--ILGVKFFKFDFLDLDSWEFIRQAIG 133 (227)
Q Consensus 65 ~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~--i~gv~~~~gDi~~~~~~~~i~~~l~ 133 (227)
T Consensus 111 p~pge~VLDlCAAPGGKtt~la~~m~~---~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~-----~-~~~~~~~ 181 (471)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNN---QGALVANEYSASRVKVLHANISRCGVSNVALTHFDG-----R-VFGAALP 181 (471)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCC---CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCH-----H-HHHHHCC
T ss_conf 899998999577854899999997589---966999838899999999999971998479993586-----6-7403230
Q ss_pred CCCCEEEECCCHHHCCCCCC----H---------HHHHHHHHHHHHHHHHHCCCCCCEEEEEE--ECCCCHHHHH-HHHH
Q ss_conf 88748975320211022210----1---------57889899988987641148774699993--0599989999-9998
Q gi|254780313|r 134 GNPDLVLSDMAYPTIGHRKI----D---------HLRTMSLCEAATFFALEMLNIGGDFLVKT--FQGGTTNDIL-CLLK 197 (227)
Q Consensus 134 ~~~DlVlSDmapn~SG~~~~----D---------~~~~~~L~~~al~~A~~~Lk~gG~fV~K~--F~G~~~~~l~-~~l~ 197 (227)
T Consensus 182 ~~FD~ILvDa--PCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYSTCT~~peENE~vv~~~l~ 259 (471)
T PRK11933 182 EMFDAILLDA--PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKE 259 (471)
T ss_pred CCCCEEEECC--CCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 1066799878--88887335559757641898799999999999999999873889689998179995667999999998
Q ss_pred HHCCEEEE
Q ss_conf 62584699
Q gi|254780313|r 198 KHFQKVIH 205 (227)
Q Consensus 198 ~~F~~V~~ 205 (227)
T Consensus 260 ~~p~~v~~ 267 (471)
T PRK11933 260 TYGDAVEF 267 (471)
T ss_pred HCCCCEEC
T ss_conf 68863310