HHsearch alignment for GI: 254780313 and conserved domain: TIGR00080
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=96.07 E-value=0.039 Score=33.83 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=60.2
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C-------CCCCCCEEEECCCCHHHHHH
Q ss_conf 8313796788850455306899999706878832786411213---------3-------34698178301122079999
Q gi|254780313|r 63 QILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M-------EPILGVKFFKFDFLDLDSWE 126 (227)
Q Consensus 63 ~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~-------~~i~gv~~~~gDi~~~~~~~ 126 (227)
T Consensus 78 nhL~~~~~vLeiG~GSGY~aavlA~~v~~---~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~~G-~~~ 153 (228)
T TIGR00080 78 NHLKPGAKVLEIGTGSGYQAAVLAEIVGR---DGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGRQG-WEE 153 (228)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHC---CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-HHH
T ss_conf 52140355665047855899999998713---97189985357889999987654314440688658997788657-102
Q ss_pred HHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99973138874897532021102221015788989998898764114877469999305
Q gi|254780313|r 127 FIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ 185 (227)
Q Consensus 127 ~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~ 185 (227)
T Consensus 154 ------~APYd~I~~~AA~-----k~iP~AL~~QL------------~eGG~L~~Pv~~ 189 (228)
T TIGR00080 154 ------KAPYDAILVTAAA-----KEIPKALIDQL------------EEGGILVLPVGE 189 (228)
T ss_pred ------CCCCCEEEEECCC-----CCCCHHHHHHH------------HHCCEEEECCEE
T ss_conf ------4883527752378-----98765789999------------728988620000