HHsearch alignment for GI: 254780313 and conserved domain: TIGR02081
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=97.66 E-value=5.8e-05 Score=51.56 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=53.4
Q ss_pred CCCCCCCCEEEEEECCCCHHHHHHHHHHCCCC---CCEEEEEECCCC---CCC-CCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 58313796788850455306899999706878---832786411213---334-69817830112207999999973138
Q gi|254780313|r 62 HQILQSNRRIVDLGSSPGSWSQVAARITGSNA---NNTRVVAIDILD---MEP-ILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 62 f~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~---~~~~VigVDl~~---~~~-i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
T Consensus 8 ~~~Ip~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac~~RGv~VIq~Dld~G-----L~~F~D~ 82 (205)
T TIGR02081 8 LDLIPPGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLACVARGVSVIQGDLDEG-----LEAFPDK 82 (205)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEECCCCCCC-----CCCCCCC
T ss_conf 86168887364101688789999997437898887120001023454459999862520130060034-----0116788
Q ss_pred CCCEEEE
Q ss_conf 8748975
Q gi|254780313|r 135 NPDLVLS 141 (227)
Q Consensus 135 ~~DlVlS 141 (227)
T Consensus 83 ~FD~ViL 89 (205)
T TIGR02081 83 SFDYVIL 89 (205)
T ss_pred CCCEEEE
T ss_conf 7662542