HHsearch alignment for GI: 254780313 and conserved domain: cd00315

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.00  E-value=0.8  Score=25.61  Aligned_cols=138  Identities=20%  Similarity=0.182  Sum_probs=76.6

Q ss_pred             CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf             678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r   69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD  142 (227)
Q Consensus        69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD  142 (227)
T Consensus         1 l~v~dLFsG~GG~s~Gl-~~aG---~-~~~~a~e~d~~a~~t~~~N~~~-~~~~~Di~~~~~~~-----~~~~vDll~g-   68 (275)
T cd00315           1 LRVIDLFAGIGGFRLGL-EKAG---F-EIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKD-----FIPDIDLLTG-   68 (275)
T ss_pred             CCEEEECCCCCHHHHHH-HHCC---C-EEEEEEECCHHHHHHHHHHCCC-CCCCCCHHHCCCCC-----CCCCCCEEEE-
T ss_conf             95999767807899999-9869---9-8999996899999999988799-95258864465321-----3788788986-


Q ss_pred             CCHHHCCCC------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-------EECCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf             202110222------1015788989998898764114877469999-------305999899999998625846997686
Q gi|254780313|r  143 MAYPTIGHR------KIDHLRTMSLCEAATFFALEMLNIGGDFLVK-------TFQGGTTNDILCLLKKHFQKVIHVKPV  209 (227)
Q Consensus       143 mapn~SG~~------~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-------~F~G~~~~~l~~~l~~~F~~V~~~KP~  209 (227)
T Consensus        69 -gpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~~~~~vl~  144 (275)
T cd00315          69 -GFPCQPFSIAGKRKGFEDTRG-TLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN  144 (275)
T ss_pred             -CCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             -899987354786388656401-6899999999-876885-882763766875235607899999998679820277867


Q ss_pred             CCC---CCCCE-EEEEE
Q ss_conf             657---55824-98983
Q gi|254780313|r  210 ASR---AESVE-MFLLA  222 (227)
Q Consensus       210 aSR---~~S~E-~Ylv~  222 (227)
T Consensus       145 a~~~GvPQ~R~R~fiva  161 (275)
T cd00315         145 ASDYGVPQNRERVFIIG  161 (275)
T ss_pred             HHHCCCCCCCCEEEEEE
T ss_conf             99979997761899998