HHsearch alignment for GI: 254780313 and conserved domain: cd00315
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.00 E-value=0.8 Score=25.61 Aligned_cols=138 Identities=20% Similarity=0.182 Sum_probs=76.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCCC------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEEEC
Q ss_conf 678885045530689999970687883278641121333------46981783011220799999997313887489753
Q gi|254780313|r 69 RRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDME------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSD 142 (227)
Q Consensus 69 ~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~~------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSD 142 (227)
T Consensus 1 l~v~dLFsG~GG~s~Gl-~~aG---~-~~~~a~e~d~~a~~t~~~N~~~-~~~~~Di~~~~~~~-----~~~~vDll~g- 68 (275)
T cd00315 1 LRVIDLFAGIGGFRLGL-EKAG---F-EIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKD-----FIPDIDLLTG- 68 (275)
T ss_pred CCEEEECCCCCHHHHHH-HHCC---C-EEEEEEECCHHHHHHHHHHCCC-CCCCCCHHHCCCCC-----CCCCCCEEEE-
T ss_conf 95999767807899999-9869---9-8999996899999999988799-95258864465321-----3788788986-
Q ss_pred CCHHHCCCC------CCHHHHHHHHHHHHHHHHHHCCCCCCEEEEE-------EECCCCHHHHHHHHHHHCCEEEEECCC
Q ss_conf 202110222------1015788989998898764114877469999-------305999899999998625846997686
Q gi|254780313|r 143 MAYPTIGHR------KIDHLRTMSLCEAATFFALEMLNIGGDFLVK-------TFQGGTTNDILCLLKKHFQKVIHVKPV 209 (227)
Q Consensus 143 mapn~SG~~------~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K-------~F~G~~~~~l~~~l~~~F~~V~~~KP~ 209 (227)
T Consensus 69 -gpPCQ~fS~ag~~~~~~d~r~-~L~~~~~~~i-~~~~P~-~~~~ENV~~~~~~~~~~~~~~i~~~l~~~GY~~~~~vl~ 144 (275)
T cd00315 69 -GFPCQPFSIAGKRKGFEDTRG-TLFFEIIRIL-KEKKPK-YFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLN 144 (275)
T ss_pred -CCCCCCCCCCCCCCCCCCCCC-HHHHHHHHHH-HHHCCC-EEEHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEEEEC
T ss_conf -899987354786388656401-6899999999-876885-882763766875235607899999998679820277867
Q ss_pred CCC---CCCCE-EEEEE
Q ss_conf 657---55824-98983
Q gi|254780313|r 210 ASR---AESVE-MFLLA 222 (227)
Q Consensus 210 aSR---~~S~E-~Ylv~ 222 (227)
T Consensus 145 a~~~GvPQ~R~R~fiva 161 (275)
T cd00315 145 ASDYGVPQNRERVFIIG 161 (275)
T ss_pred HHHCCCCCCCCEEEEEE
T ss_conf 99979997761899998