HHsearch alignment for GI: 254780313 and conserved domain: pfam02384
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.00 E-value=0.0035 Score=40.39 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCC---CCCCEEEEEECCCCC-----------CCCC
Q ss_conf 4479999999998645831--37967888504553068999997068---788327864112133-----------3469
Q gi|254780313|r 47 WRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGS---NANNTRVVAIDILDM-----------EPIL 110 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~---~~~~~~VigVDl~~~-----------~~i~ 110 (227)
T Consensus 29 fTPr~Vv~lmv-----~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~ 103 (312)
T pfam02384 29 YTPREVSKLIV-----ELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE 103 (312)
T ss_pred CCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88789999999-----9828999998821687733789999999998437855655636889989999999999984798
Q ss_pred --CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH---------------HHHHHHHHHHHHHHCC
Q ss_conf --81783011220799999997313887489753202110222101578---------------8989998898764114
Q gi|254780313|r 111 --GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---------------TMSLCEAATFFALEML 173 (227)
Q Consensus 111 --gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~---------------~~~L~~~al~~A~~~L 173 (227)
T Consensus 104 ~~~~~i~~gdsl~~~~~-----~~~~kfD~IlsN--PPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~--~Fiqh~l~~L 174 (312)
T pfam02384 104 YNDFGIRHGDTLLSPKF-----EEDKKFDVVVAN--PPFNQKWDANDNLENDPRFRAYGVPPKSNADF--AFLQHIIYHL 174 (312)
T ss_pred CCCCCCCCCCCCCCCCC-----CCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHH--HHHHHHHHHC
T ss_conf 87455214776557676-----654551189837--86466766543210272110368788874429--9999999856
Q ss_pred CCCCEEEEEE-----ECCCCHHHHHHHHHHHCC
Q ss_conf 8774699993-----059998999999986258
Q gi|254780313|r 174 NIGGDFLVKT-----FQGGTTNDILCLLKKHFQ 201 (227)
Q Consensus 174 k~gG~fV~K~-----F~G~~~~~l~~~l~~~F~ 201 (227)
T Consensus 175 k~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~ 207 (312)
T pfam02384 175 SPNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL 207 (312)
T ss_pred CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 999769999558231046508899999997597