HHsearch alignment for GI: 254780313 and conserved domain: pfam02384

>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=97.00  E-value=0.0035  Score=40.39  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             CHHHHHHHHHHHHHHCCCC--CCCCEEEEEECCCCHHHHHHHHHHCC---CCCCEEEEEECCCCC-----------CCCC
Q ss_conf             4479999999998645831--37967888504553068999997068---788327864112133-----------3469
Q gi|254780313|r   47 WRARSAYKLLQINEKHQIL--QSNRRIVDLGSSPGSWSQVAARITGS---NANNTRVVAIDILDM-----------EPIL  110 (227)
Q Consensus        47 yrsRaafKL~eId~kf~l~--k~g~~VlDLGaaPGgWsQva~~~~~~---~~~~~~VigVDl~~~-----------~~i~  110 (227)
T Consensus        29 fTPr~Vv~lmv-----~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~  103 (312)
T pfam02384        29 YTPREVSKLIV-----ELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIE  103 (312)
T ss_pred             CCCHHHHHHHH-----HHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             88789999999-----9828999998821687733789999999998437855655636889989999999999984798


Q ss_pred             --CCEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHH---------------HHHHHHHHHHHHHHCC
Q ss_conf             --81783011220799999997313887489753202110222101578---------------8989998898764114
Q gi|254780313|r  111 --GVKFFKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLR---------------TMSLCEAATFFALEML  173 (227)
Q Consensus       111 --gv~~~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~---------------~~~L~~~al~~A~~~L  173 (227)
T Consensus       104 ~~~~~i~~gdsl~~~~~-----~~~~kfD~IlsN--PPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~--~Fiqh~l~~L  174 (312)
T pfam02384       104 YNDFGIRHGDTLLSPKF-----EEDKKFDVVVAN--PPFNQKWDANDNLENDPRFRAYGVPPKSNADF--AFLQHIIYHL  174 (312)
T ss_pred             CCCCCCCCCCCCCCCCC-----CCCCCCCEEEEC--CCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHH--HHHHHHHHHC
T ss_conf             87455214776557676-----654551189837--86466766543210272110368788874429--9999999856


Q ss_pred             CCCCEEEEEE-----ECCCCHHHHHHHHHHHCC
Q ss_conf             8774699993-----059998999999986258
Q gi|254780313|r  174 NIGGDFLVKT-----FQGGTTNDILCLLKKHFQ  201 (227)
Q Consensus       174 k~gG~fV~K~-----F~G~~~~~l~~~l~~~F~  201 (227)
T Consensus       175 k~~GraaiVlp~g~Lf~~~~e~~iR~~lle~~~  207 (312)
T pfam02384       175 SPNGRAAVVLPNGVLFRGGAEGDIRKALVEKDL  207 (312)
T ss_pred             CCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             999769999558231046508899999997597