HHsearch alignment for GI: 254780313 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=98.84 E-value=5.6e-08 Score=70.47 Aligned_cols=119 Identities=20% Similarity=0.236 Sum_probs=84.3
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-----------CCCCCCEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 37967888504553068999997068788327864112133-----------3469817830112207999999973138
Q gi|254780313|r 66 QSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-----------EPILGVKFFKFDFLDLDSWEFIRQAIGG 134 (227)
Q Consensus 66 k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-----------~~i~gv~~~~gDi~~~~~~~~i~~~l~~ 134 (227)
T Consensus 30 ~~~g~vLDlGcG~G~i~~~la~~~p----~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~~--------~~~~ 97 (170)
T pfam05175 30 PLGGKVLDLGCGYGVLGAALAKRSP----DLEVTMVDINARALESARANLAANGLENGEVFWSDLYSA--------VEPG 97 (170)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--------CCCC
T ss_conf 7899499977648298999999789----867985154499999999999980998489997446665--------7788
Q ss_pred CCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE--EEEEECCCCHHHHHHHHHHHCCEEEEEC
Q ss_conf 874897532021102221015788989998898764114877469--9993059998999999986258469976
Q gi|254780313|r 135 NPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF--LVKTFQGGTTNDILCLLKKHFQKVIHVK 207 (227)
Q Consensus 135 ~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f--V~K~F~G~~~~~l~~~l~~~F~~V~~~K 207 (227)
T Consensus 98 ~fD~IvsNP-P~h~g~-~~----~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l~y-----~~~l~~~f~~v~~~~ 161 (170)
T pfam05175 98 KFDLIISNP-PFHAGK-AT----DYDVAQRFIAGAARHLKPGGELWIVANRHLGY-----PSLLEELFGNVEVLA 161 (170)
T ss_pred CEEEEEECC-CCCCCC-CC----CHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC-----HHHHHHHHCCEEEEE
T ss_conf 660899897-721142-03----28999999999999616497999999899994-----799998608889997