HHsearch alignment for GI: 254780313 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=97.55 E-value=0.00019 Score=48.36 Aligned_cols=115 Identities=17% Similarity=0.265 Sum_probs=77.4
Q ss_pred CCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------CCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 96788850455306899999706878832786411213---------334698178301122079999999731388748
Q gi|254780313|r 68 NRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------MEPILGVKFFKFDFLDLDSWEFIRQAIGGNPDL 138 (227)
Q Consensus 68 g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~~Dl 138 (227)
T Consensus 44 y~~alE~GCa~G~lT~~LA~RCd------rLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~--------wP~~~FDL 109 (201)
T pfam05401 44 IANALEVGCAAGAFTERLAPYCQ------RLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQF--------STNELFDL 109 (201)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHH------HHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCC--------CCCCCEEE
T ss_conf 30020435662487899999874------67321362999999999855799828982566665--------99888627
Q ss_pred EEEC-CCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-------C--CCHHHHHHHHHHHCCEEEE
Q ss_conf 9753-2021102221015788989998898764114877469999305-------9--9989999999862584699
Q gi|254780313|r 139 VLSD-MAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKTFQ-------G--GTTNDILCLLKKHFQKVIH 205 (227)
Q Consensus 139 VlSD-mapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~F~-------G--~~~~~l~~~l~~~F~~V~~ 205 (227)
T Consensus 110 IV~SEVl-----YYL~d~a~----lr~~~~~~v~~LaP~G~Lvfgsarda~crrwgh~~gaetv~~~~~e~l~eve~ 177 (201)
T pfam05401 110 IVVAEVL-----YYLGDVAE----MRGAVRNLVSMLAPDGQLVFGSARDANCRRWGHVAGAETVIALLNESLREVER 177 (201)
T ss_pred EEEEHHH-----HHHCCHHH----HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9751477-----86187999----99999999997189965997304510665510111189999999988778877