HHsearch alignment for GI: 254780313 and conserved domain: pfam06016
>pfam06016 Reovirus_L2 Reovirus core-spike protein lambda-2 (L2). This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts.
Probab=97.13 E-value=0.0062 Score=38.86 Aligned_cols=142 Identities=23% Similarity=0.281 Sum_probs=95.3
Q ss_pred HCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCC----CCCCCC------CCEEEECCCCHHHHHHHHHH
Q ss_conf 45831379678885045530689999970687883278641121----333469------81783011220799999997
Q gi|254780313|r 61 KHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDIL----DMEPIL------GVKFFKFDFLDLDSWEFIRQ 130 (227)
Q Consensus 61 kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~----~~~~i~------gv~~~~gDi~~~~~~~~i~~ 130 (227)
T Consensus 501 ~~~~l~~~~SmaYlGAS~~Ha~----------adqP~Ii~-pl~~GsipGvp~Pssi~QfGydVa~Gsi~Dl~-----~p 564 (1289)
T pfam06016 501 DHRVLPDSFSMAYLGASSTHAD----------ADQPLIIE-PLLSGSIPGVPIPSSVKQFGYDVANGSICDLE-----LP 564 (1289)
T ss_pred CCCCCCCCCEEEEEECCCCCCC----------CCCCEEEH-HHHCCCCCCCCCCHHHHHCCCEECCCEEEEEE-----CC
T ss_conf 8702578741799603555678----------89871415-76659988876750465506010365666321-----26
Q ss_pred HCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE-ECCCCH-HHHHHHHHHHCCEEEEECC
Q ss_conf 31388748975320211022210157889899988987641148774699993-059998-9999999862584699768
Q gi|254780313|r 131 AIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDFLVKT-FQGGTT-NDILCLLKKHFQKVIHVKP 208 (227)
Q Consensus 131 ~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~fV~K~-F~G~~~-~~l~~~l~~~F~~V~~~KP 208 (227)
T Consensus 565 ~pTGtf~fVYsDvDQVedg~~D--l~assr~~~s~L~~~m~mTtaGGs~V~KvNFPT~~~W~~if~~~ap~~tslhl~KP 642 (1289)
T pfam06016 565 LPTGTFFFVYSDVDQVEDGGSD--LDASSRAACSQLDMAMKMTTAGGSLVVKVNFPTRAVWTQIFSTIAPYATSLHLMKP 642 (1289)
T ss_pred CCCCCEEEEEECHHHHHCCCCC--CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8876269998233566517877--40355789999877885403784489995588489999999763555114556420
Q ss_pred CCCCCCCCEEEEEE
Q ss_conf 66575582498983
Q gi|254780313|r 209 VASRAESVEMFLLA 222 (227)
Q Consensus 209 ~aSR~~S~E~Ylv~ 222 (227)
T Consensus 643 ~v~--Nn~Evf~vf 654 (1289)
T pfam06016 643 LVV--NNVELFLLF 654 (1289)
T ss_pred EEE--CCEEEEEEE
T ss_conf 344--553799998