HHsearch alignment for GI: 254780313 and conserved domain: pfam06460

>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=98.52  E-value=1.9e-06  Score=60.85  Aligned_cols=145  Identities=23%  Similarity=0.246  Sum_probs=89.6

Q ss_pred             CCCCC-CCEEEEEE------CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf             83137-96788850------455306899999706878832786411213334698178301122079999999731388
Q gi|254780313|r   63 QILQS-NRRIVDLG------SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN  135 (227)
Q Consensus        63 ~l~k~-g~~VlDLG------aaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~  135 (227)
T Consensus        57 tlaVP~nmrVlHlGAgsdkGvaPGt--~VLrqwLP-~--~ailvDnDi~dyvSDa~~-s~~gDc~t~--------~~~~k  122 (300)
T pfam06460        57 TLCVPHNMRVLHLGAGSDKGVAPGS--AVLRQWLP-K--GTILVDNDIVDYVSDADA-SVLGDCHTL--------YTEDK  122 (300)
T ss_pred             EEEECCCCEEEEECCCCCCCCCCCH--HHHHHHCC-C--CCEEECCCHHHHHCCCCC-EEECCCEEE--------CCCCE
T ss_conf             1764356379973266556868855--89997588-9--878970751553034561-787132365--------47861


Q ss_pred             CCEEEECCCHHHCCCCCCHHH-HHHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf             748975320211022210157-8898-99988987641148774699993059998999999986258469976866575
Q gi|254780313|r  136 PDLVLSDMAYPTIGHRKIDHL-RTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA  213 (227)
Q Consensus       136 ~DlVlSDmapn~SG~~~~D~~-~~~~-L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~  213 (227)
T Consensus       123 ~DliiSDmYd~~~--k~~~~~n~sk~gfF~yl~~~i~~kLALGGSvaiKiTE~Sw~~~LY~l~-~~F~~wt~FCT-~VNa  198 (300)
T pfam06460       123 FDLIISDMYDGRT--KSIDGENNSKEGFFTYICGFIREKLALGGSIAIKITEFSWNAQLYELM-QYFSFWTMFCT-NVNT  198 (300)
T ss_pred             EEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHH-HHHHHEEEEEE-ECCC
T ss_conf             4089764337765--303664343201899999998765405765899987400689999998-54112057641-0267


Q ss_pred             CCCEEEEEECCC
Q ss_conf             582498983075
Q gi|254780313|r  214 ESVEMFLLAKGF  225 (227)
Q Consensus       214 ~S~E~Ylv~~gf  225 (227)
T Consensus       199 SSSEaFLigiNy  210 (300)
T pfam06460       199 SSSEAFLIGINY  210 (300)
T ss_pred             CCCCEEEEEEEE
T ss_conf             665325898870