HHsearch alignment for GI: 254780313 and conserved domain: pfam06460
>pfam06460 NSP13 Coronavirus NSP13. This family covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase function.
Probab=98.52 E-value=1.9e-06 Score=60.85 Aligned_cols=145 Identities=23% Similarity=0.246 Sum_probs=89.6
Q ss_pred CCCCC-CCEEEEEE------CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCC
Q ss_conf 83137-96788850------455306899999706878832786411213334698178301122079999999731388
Q gi|254780313|r 63 QILQS-NRRIVDLG------SSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFDFLDLDSWEFIRQAIGGN 135 (227)
Q Consensus 63 ~l~k~-g~~VlDLG------aaPGgWsQva~~~~~~~~~~~~VigVDl~~~~~i~gv~~~~gDi~~~~~~~~i~~~l~~~ 135 (227)
T Consensus 57 tlaVP~nmrVlHlGAgsdkGvaPGt--~VLrqwLP-~--~ailvDnDi~dyvSDa~~-s~~gDc~t~--------~~~~k 122 (300)
T pfam06460 57 TLCVPHNMRVLHLGAGSDKGVAPGS--AVLRQWLP-K--GTILVDNDIVDYVSDADA-SVLGDCHTL--------YTEDK 122 (300)
T ss_pred EEEECCCCEEEEECCCCCCCCCCCH--HHHHHHCC-C--CCEEECCCHHHHHCCCCC-EEECCCEEE--------CCCCE
T ss_conf 1764356379973266556868855--89997588-9--878970751553034561-787132365--------47861
Q ss_pred CCEEEECCCHHHCCCCCCHHH-HHHH-HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCEEEEECCCCCCC
Q ss_conf 748975320211022210157-8898-99988987641148774699993059998999999986258469976866575
Q gi|254780313|r 136 PDLVLSDMAYPTIGHRKIDHL-RTMS-LCEAATFFALEMLNIGGDFLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRA 213 (227)
Q Consensus 136 ~DlVlSDmapn~SG~~~~D~~-~~~~-L~~~al~~A~~~Lk~gG~fV~K~F~G~~~~~l~~~l~~~F~~V~~~KP~aSR~ 213 (227)
T Consensus 123 ~DliiSDmYd~~~--k~~~~~n~sk~gfF~yl~~~i~~kLALGGSvaiKiTE~Sw~~~LY~l~-~~F~~wt~FCT-~VNa 198 (300)
T pfam06460 123 FDLIISDMYDGRT--KSIDGENNSKEGFFTYICGFIREKLALGGSIAIKITEFSWNAQLYELM-QYFSFWTMFCT-NVNT 198 (300)
T ss_pred EEEEEEECCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCHHHHHHH-HHHHHEEEEEE-ECCC
T ss_conf 4089764337765--303664343201899999998765405765899987400689999998-54112057641-0267
Q ss_pred CCCEEEEEECCC
Q ss_conf 582498983075
Q gi|254780313|r 214 ESVEMFLLAKGF 225 (227)
Q Consensus 214 ~S~E~Ylv~~gf 225 (227)
T Consensus 199 SSSEaFLigiNy 210 (300)
T pfam06460 199 SSSEAFLIGINY 210 (300)
T ss_pred CCCCEEEEEEEE
T ss_conf 665325898870