HHsearch alignment for GI: 254780313 and conserved domain: pfam08242

Probab=97.70  E-value=5.1e-05  Score=51.91  Aligned_cols=87  Identities=20%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             EEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCCC-C----------CCCCCEEEECCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf             88504553068999997068788327864112133-3----------469817830112207999999973138874897
Q gi|254780313|r   72 VDLGSSPGSWSQVAARITGSNANNTRVVAIDILDM-E----------PILGVKFFKFDFLDLDSWEFIRQAIGGNPDLVL  140 (227)
Q Consensus        72 lDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~~-~----------~i~gv~~~~gDi~~~~~~~~i~~~l~~~~DlVl  140 (227)
T Consensus         1 LDvGcG~G~~~~~l~~~~~----~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~fD~I~   70 (98)
T pfam08242         1 LDIGCGTGTLLRALLEALP----GLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDA------IDLDPGSFDVVV   70 (98)
T ss_pred             CCCCCCCCHHHHHHHHHCC----CCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCH------HHCCCCCCCEEE
T ss_conf             9886337999999998789----988999859889999999999871345311100000002------220358988996


Q ss_pred             ECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf             532021102221015788989998898764114877469
Q gi|254780313|r  141 SDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGDF  179 (227)
Q Consensus       141 SDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk~gG~f  179 (227)
T Consensus        71 ~~~vl~~~----~~~-------~~~l~~~~r~LkpgG~l   98 (98)
T pfam08242        71 ASNVLHHL----ADP-------RAVLRNLRRLLKPGGVL   98 (98)
T ss_pred             ECCCHHHC----CCH-------HHHHHHHHHHCCCCCCC
T ss_conf             10417725----899-------99999999974999899