HHsearch alignment for GI: 254780313 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=97.90 E-value=0.00015 Score=48.95 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCC---------C---CCCCCCEE
Q ss_conf 44799999999986458313796788850455306899999706878832786411213---------3---34698178
Q gi|254780313|r 47 WRARSAYKLLQINEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILD---------M---EPILGVKF 114 (227)
Q Consensus 47 yrsRaafKL~eId~kf~l~k~g~~VlDLGaaPGgWsQva~~~~~~~~~~~~VigVDl~~---------~---~~i~gv~~ 114 (227)
T Consensus 87 YpkD~s~I~~~l----di-~PG~~VlEaGtGSGsLT~~Laravgp~---G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~ 158 (309)
T pfam08704 87 YTPDISLIIMML----EL-KPGSVVCESGTGSGSLSHAIARTVAPT---GHLYTFEFHEQRADKAREEFREHGLDSLVTV 158 (309)
T ss_pred CCCCHHHHHHHH----CC-CCCCEEEEECCCCCHHHHHHHHHHCCC---CEEEEEECCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 560099999980----98-999999983678429999999974888---6599984478999999999987498750588
Q ss_pred EECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC-CCCEEEEEEECCCCHHH--
Q ss_conf 301122079999999731388748975320211022210157889899988987641148-77469999305999899--
Q gi|254780313|r 115 FKFDFLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLN-IGGDFLVKTFQGGTTND-- 191 (227)
Q Consensus 115 ~~gDi~~~~~~~~i~~~l~~~~DlVlSDmapn~SG~~~~D~~~~~~L~~~al~~A~~~Lk-~gG~fV~K~F~G~~~~~-- 191 (227)
T Consensus 159 ~~rDv~~~gf~----~~~~~~~D~VfLDl-p~P---------------W~ai~~~~~~Lk~~Gg~l~~--f-~P~ieQv~ 215 (309)
T pfam08704 159 THRDVCKSGFD----TEVSNKADAVFLDL-PAP---------------WEAIPHAAKALKVEGGRLCS--F-SPCIEQVQ 215 (309)
T ss_pred EECCHHCCCCC----CCCCCCCCEEEECC-CCH---------------HHHHHHHHHHHCCCCCEEEE--E-CCCHHHHH
T ss_conf 98520013666----44566435899758-997---------------99889999860689968999--9-19899999
Q ss_pred -HHHHHHH-HCCEEEEE
Q ss_conf -9999986-25846997
Q gi|254780313|r 192 -ILCLLKK-HFQKVIHV 206 (227)
Q Consensus 192 -l~~~l~~-~F~~V~~~ 206 (227)
T Consensus 216 r~~~aL~~~gF~~i~t~ 232 (309)
T pfam08704 216 RTCLALAALGFTEIETI 232 (309)
T ss_pred HHHHHHHHCCCCCEEEE
T ss_conf 99999997799740799