BLAST/PSIBLAST alignment of GI: 254780313 and GI: 116250616 at iteration 1
>gi|116250616|ref|YP_766454.1| ribosomal RNA methyltransferase/cell division FtsJ protein [Rhizobium leguminosarum bv. viciae 3841] Length = 239
>gi|143461320|sp|Q1ML15|RLME_RHIL3 RecName: Full=Ribosomal RNA large subunit methyltransferase E; AltName: Full=23S rRNA Um2552 methyltransferase; AltName: Full=rRNA (uridine-2'-O-)-methyltransferase Length = 239
>gi|115255264|emb|CAK06339.1| putative ribosomal RNA methyltransferase/cell division FtsJ protein [Rhizobium leguminosarum bv. viciae 3841] Length = 239
 Score =  301 bits (770), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 139/228 (60%), Positives = 179/228 (78%), Gaps = 2/228 (0%)

Query: 1   MVKPP--GSSSRRGLTQKVKNRSCQGSSRDWLNRHINDPYVQRAQLEGWRARSAYKLLQI 58
           M K P  G+ + R L Q+VKN+  + SSR WL RHINDPYVQRAQLEG+RAR+A+KLL+I
Sbjct: 1   MTKAPIAGNRTGRKLGQRVKNKKMKASSRQWLERHINDPYVQRAQLEGYRARAAFKLLEI 60

Query: 59  NEKHQILQSNRRIVDLGSSPGSWSQVAARITGSNANNTRVVAIDILDMEPILGVKFFKFD 118
           +EKH IL+  RRI+DLG++PGSWSQ+AA++TGS  ++ RV AID L+M  + GVK  + D
Sbjct: 61  DEKHHILRGARRIIDLGAAPGSWSQIAAKVTGSTDDDIRVAAIDFLEMTQLPGVKILQLD 120

Query: 119 FLDLDSWEFIRQAIGGNPDLVLSDMAYPTIGHRKIDHLRTMSLCEAATFFALEMLNIGGD 178
           FLD  + E + +A+GG PDLV+SDMA PT GH + DHLRTM LCE A  FA+E+L  GG 
Sbjct: 121 FLDPSAPEKLLEAVGGTPDLVISDMAAPTTGHHRTDHLRTMHLCEVAAHFAVEVLGEGGH 180

Query: 179 FLVKTFQGGTTNDILCLLKKHFQKVIHVKPVASRAESVEMFLLAKGFR 226
           FL KTFQGGT  ++L +LK++F++V+HVKP +SRAESVEMFLLAKGF+
Sbjct: 181 FLTKTFQGGTERELLAMLKQNFRQVVHVKPNSSRAESVEMFLLAKGFK 228